Query 017777
Match_columns 366
No_of_seqs 183 out of 2186
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:20:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 2.1E-44 4.6E-49 323.3 27.2 338 16-364 2-342 (342)
2 TIGR02716 C20_methyl_CrtF C-20 100.0 3.6E-38 7.8E-43 291.8 25.5 290 33-351 3-305 (306)
3 PF00891 Methyltransf_2: O-met 100.0 1.2E-38 2.5E-43 285.4 19.1 236 104-341 3-241 (241)
4 COG2226 UbiE Methylase involve 99.8 1.7E-17 3.7E-22 145.1 16.7 163 192-358 43-230 (238)
5 PLN02233 ubiquinone biosynthes 99.8 7.3E-17 1.6E-21 145.7 19.0 156 199-358 71-254 (261)
6 TIGR00740 methyltransferase, p 99.8 2.4E-18 5.1E-23 153.8 9.1 157 200-361 52-236 (239)
7 PRK15451 tRNA cmo(5)U34 methyl 99.7 4.2E-18 9.2E-23 152.7 8.6 153 200-353 55-231 (247)
8 PF01209 Ubie_methyltran: ubiE 99.7 4E-18 8.6E-23 150.6 6.7 156 199-362 45-231 (233)
9 PTZ00098 phosphoethanolamine N 99.7 1.4E-16 3.1E-21 144.0 16.5 156 189-354 41-204 (263)
10 TIGR02752 MenG_heptapren 2-hep 99.7 3E-16 6.4E-21 139.6 15.3 168 191-364 36-231 (231)
11 PRK14103 trans-aconitate 2-met 99.7 7.8E-16 1.7E-20 138.9 17.2 154 190-348 19-180 (255)
12 PLN02244 tocopherol O-methyltr 99.7 1.2E-15 2.5E-20 143.0 16.9 151 200-354 117-280 (340)
13 PLN02490 MPBQ/MSBQ methyltrans 99.7 1.7E-15 3.6E-20 140.1 16.9 139 201-354 113-258 (340)
14 PRK00216 ubiE ubiquinone/menaq 99.6 1.1E-14 2.4E-19 129.9 17.7 168 191-365 42-239 (239)
15 KOG1540 Ubiquinone biosynthesi 99.6 5.7E-15 1.2E-19 126.9 14.5 151 192-349 92-278 (296)
16 PLN02336 phosphoethanolamine N 99.6 6E-15 1.3E-19 145.0 16.2 151 190-353 256-415 (475)
17 COG2230 Cfa Cyclopropane fatty 99.6 5.1E-15 1.1E-19 131.8 13.5 157 189-354 61-225 (283)
18 TIGR00452 methyltransferase, p 99.6 1.7E-14 3.8E-19 132.4 16.1 154 190-353 111-274 (314)
19 PF13489 Methyltransf_23: Meth 99.6 5.9E-15 1.3E-19 123.4 12.0 137 199-349 20-160 (161)
20 PF02353 CMAS: Mycolic acid cy 99.6 4.2E-15 9.2E-20 134.2 11.7 161 189-354 51-219 (273)
21 smart00828 PKS_MT Methyltransf 99.6 7.4E-15 1.6E-19 130.0 13.0 136 203-354 1-146 (224)
22 PRK11207 tellurite resistance 99.6 1.4E-14 3E-19 125.4 14.4 141 190-351 20-169 (197)
23 PRK15068 tRNA mo(5)U34 methylt 99.6 1.4E-14 2.9E-19 134.5 14.8 153 191-353 113-275 (322)
24 PLN02396 hexaprenyldihydroxybe 99.6 3.5E-15 7.5E-20 137.6 10.4 144 201-352 131-289 (322)
25 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 5.7E-14 1.2E-18 124.0 16.4 165 191-364 30-223 (223)
26 PRK01683 trans-aconitate 2-met 99.6 1.5E-13 3.3E-18 124.3 17.8 153 189-347 20-182 (258)
27 PF12847 Methyltransf_18: Meth 99.6 4.9E-15 1.1E-19 116.2 6.8 97 202-298 2-111 (112)
28 PRK11873 arsM arsenite S-adeno 99.6 7.7E-14 1.7E-18 127.2 14.9 145 199-352 75-230 (272)
29 PRK08317 hypothetical protein; 99.6 1.1E-13 2.5E-18 123.3 15.5 156 191-352 10-176 (241)
30 PRK11036 putative S-adenosyl-L 99.6 4.3E-14 9.2E-19 127.6 12.3 157 191-354 36-209 (255)
31 PRK06922 hypothetical protein; 99.5 4.5E-14 9.8E-19 138.4 12.1 141 162-303 378-542 (677)
32 COG4106 Tam Trans-aconitate me 99.5 8.3E-14 1.8E-18 116.9 11.8 184 177-365 8-204 (257)
33 TIGR00477 tehB tellurite resis 99.5 1.7E-13 3.8E-18 118.4 14.1 140 191-351 21-168 (195)
34 PF13847 Methyltransf_31: Meth 99.5 9.4E-15 2E-19 121.3 5.4 136 201-344 3-152 (152)
35 smart00138 MeTrc Methyltransfe 99.5 6E-13 1.3E-17 120.2 15.7 101 199-299 97-243 (264)
36 PF08241 Methyltransf_11: Meth 99.5 3.7E-14 8.1E-19 107.4 6.4 88 206-296 1-95 (95)
37 PRK10258 biotin biosynthesis p 99.5 1.1E-12 2.4E-17 118.1 16.8 147 189-347 31-182 (251)
38 PRK05785 hypothetical protein; 99.5 1.1E-12 2.3E-17 116.0 16.0 153 201-364 51-224 (226)
39 PRK06202 hypothetical protein; 99.5 1.3E-12 2.9E-17 116.1 16.5 144 200-353 59-223 (232)
40 TIGR02021 BchM-ChlM magnesium 99.5 8.1E-13 1.8E-17 116.5 14.3 146 200-355 54-209 (219)
41 TIGR02072 BioC biotin biosynth 99.5 1.2E-12 2.6E-17 116.8 14.4 136 201-351 34-175 (240)
42 PRK04266 fibrillarin; Provisio 99.5 4.2E-12 9.1E-17 111.7 17.0 145 195-365 67-226 (226)
43 PRK11705 cyclopropane fatty ac 99.5 1.3E-12 2.7E-17 124.1 14.6 155 189-354 156-314 (383)
44 KOG1270 Methyltransferases [Co 99.5 1.5E-13 3.3E-18 119.0 7.4 141 202-350 90-247 (282)
45 PLN02336 phosphoethanolamine N 99.4 1E-12 2.3E-17 129.2 14.1 144 189-349 26-179 (475)
46 PF08242 Methyltransf_12: Meth 99.4 3E-14 6.6E-19 109.2 2.3 87 206-294 1-99 (99)
47 TIGR03587 Pse_Me-ase pseudamin 99.4 1E-12 2.3E-17 114.0 12.1 103 199-303 41-147 (204)
48 KOG4300 Predicted methyltransf 99.4 9.5E-13 2.1E-17 109.8 11.1 178 174-359 50-239 (252)
49 PRK12335 tellurite resistance 99.4 1.7E-12 3.6E-17 119.1 14.0 131 201-351 120-258 (287)
50 PRK08287 cobalt-precorrin-6Y C 99.4 2.7E-12 5.9E-17 110.3 13.8 125 193-352 24-156 (187)
51 TIGR00537 hemK_rel_arch HemK-r 99.4 4.4E-12 9.6E-17 108.2 14.7 134 201-365 19-178 (179)
52 KOG2361 Predicted methyltransf 99.4 8.9E-13 1.9E-17 112.8 9.7 145 204-350 74-235 (264)
53 PF13649 Methyltransf_25: Meth 99.4 1.9E-13 4.2E-18 105.2 4.3 88 205-292 1-101 (101)
54 PF08003 Methyltransf_9: Prote 99.4 6.2E-12 1.4E-16 112.2 14.2 153 189-353 104-268 (315)
55 PF06080 DUF938: Protein of un 99.4 6.7E-12 1.4E-16 106.6 13.6 158 204-364 28-204 (204)
56 COG2227 UbiG 2-polyprenyl-3-me 99.4 3.7E-13 8.1E-18 115.9 5.8 141 201-352 59-215 (243)
57 PRK07580 Mg-protoporphyrin IX 99.4 8.3E-12 1.8E-16 110.8 14.0 147 200-355 62-217 (230)
58 TIGR03438 probable methyltrans 99.4 5.5E-12 1.2E-16 116.4 12.8 96 201-296 63-175 (301)
59 TIGR03840 TMPT_Se_Te thiopurin 99.4 4.9E-11 1.1E-15 104.1 16.7 132 200-352 33-187 (213)
60 PRK15001 SAM-dependent 23S rib 99.4 2E-11 4.3E-16 114.8 15.1 107 191-298 219-340 (378)
61 PF05891 Methyltransf_PK: AdoM 99.3 3.4E-12 7.4E-17 108.9 7.3 138 201-353 55-202 (218)
62 PRK00107 gidB 16S rRNA methylt 99.3 5.8E-11 1.3E-15 101.4 14.8 129 201-365 45-187 (187)
63 PLN02585 magnesium protoporphy 99.3 1.4E-11 3.1E-16 113.4 10.9 147 201-356 144-303 (315)
64 TIGR00138 gidB 16S rRNA methyl 99.3 3.2E-11 7E-16 102.7 12.3 91 202-298 43-142 (181)
65 PRK09489 rsmC 16S ribosomal RN 99.3 8.7E-11 1.9E-15 109.7 16.1 107 192-299 188-304 (342)
66 PLN03075 nicotianamine synthas 99.3 1.4E-11 3E-16 111.3 10.4 98 200-298 122-233 (296)
67 PRK05134 bifunctional 3-demeth 99.3 3.2E-11 6.9E-16 107.4 12.5 145 200-352 47-205 (233)
68 PF05401 NodS: Nodulation prot 99.3 5.9E-12 1.3E-16 105.6 6.8 134 195-352 38-179 (201)
69 PRK13255 thiopurine S-methyltr 99.2 2.3E-10 5E-15 100.3 15.1 133 199-352 35-190 (218)
70 PF03848 TehB: Tellurite resis 99.2 2.9E-11 6.3E-16 102.7 8.6 140 191-351 21-168 (192)
71 PF05148 Methyltransf_8: Hypot 99.2 2E-10 4.3E-15 97.1 13.5 159 166-365 33-198 (219)
72 TIGR01983 UbiG ubiquinone bios 99.2 7.8E-11 1.7E-15 104.2 10.1 142 201-352 45-203 (224)
73 TIGR02469 CbiT precorrin-6Y C5 99.2 1.3E-10 2.7E-15 92.6 10.3 100 192-297 11-121 (124)
74 TIGR03534 RF_mod_PrmC protein- 99.2 2.5E-10 5.4E-15 102.7 13.5 124 201-354 87-243 (251)
75 TIGR02081 metW methionine bios 99.2 2.7E-10 6E-15 98.4 13.0 145 201-353 13-168 (194)
76 PTZ00146 fibrillarin; Provisio 99.2 1.2E-09 2.7E-14 98.3 17.4 132 199-354 130-273 (293)
77 COG2813 RsmC 16S RNA G1207 met 99.2 7.5E-10 1.6E-14 99.2 15.8 142 190-365 148-300 (300)
78 PF05175 MTS: Methyltransferas 99.2 4.5E-11 9.8E-16 101.0 7.2 98 201-298 31-140 (170)
79 PRK11188 rrmJ 23S rRNA methylt 99.2 4.5E-10 9.8E-15 98.0 13.6 107 189-299 39-166 (209)
80 PRK00121 trmB tRNA (guanine-N( 99.2 5.9E-11 1.3E-15 103.1 7.2 98 201-298 40-156 (202)
81 PRK00517 prmA ribosomal protei 99.2 5.8E-10 1.3E-14 100.2 13.3 121 200-360 118-246 (250)
82 PRK09328 N5-glutamine S-adenos 99.1 1.6E-09 3.4E-14 98.9 15.3 135 199-363 106-274 (275)
83 PRK14968 putative methyltransf 99.1 1.9E-09 4.1E-14 92.5 14.9 123 200-353 22-174 (188)
84 PLN02232 ubiquinone biosynthes 99.1 2E-10 4.3E-15 96.0 8.6 127 229-357 1-152 (160)
85 KOG3045 Predicted RNA methylas 99.1 1.4E-09 3E-14 94.0 13.4 159 164-365 139-304 (325)
86 PF12147 Methyltransf_20: Puta 99.1 1.8E-09 3.9E-14 95.6 14.2 160 200-364 134-311 (311)
87 COG4123 Predicted O-methyltran 99.1 9.7E-10 2.1E-14 96.5 12.5 138 199-366 42-214 (248)
88 TIGR00091 tRNA (guanine-N(7)-) 99.1 1.6E-10 3.4E-15 99.8 7.1 99 201-299 16-133 (194)
89 TIGR00536 hemK_fam HemK family 99.1 3.4E-09 7.3E-14 97.1 15.6 132 203-364 116-282 (284)
90 TIGR03533 L3_gln_methyl protei 99.1 1.5E-09 3.3E-14 99.1 13.2 126 201-357 121-279 (284)
91 PRK11088 rrmA 23S rRNA methylt 99.1 7.3E-10 1.6E-14 100.9 11.0 90 201-299 85-182 (272)
92 PF07021 MetW: Methionine bios 99.1 2.6E-09 5.6E-14 89.7 12.9 143 200-355 12-170 (193)
93 COG2242 CobL Precorrin-6B meth 99.1 3.1E-09 6.8E-14 88.6 12.4 101 192-299 26-136 (187)
94 PRK13944 protein-L-isoaspartat 99.1 1E-09 2.3E-14 95.5 10.1 99 190-297 62-172 (205)
95 PRK14966 unknown domain/N5-glu 99.1 5.8E-09 1.3E-13 98.4 15.6 134 201-364 251-418 (423)
96 PHA03411 putative methyltransf 99.0 2.2E-09 4.7E-14 95.7 11.8 123 202-347 65-209 (279)
97 PRK14121 tRNA (guanine-N(7)-)- 99.0 1.8E-09 4E-14 101.2 10.1 107 191-299 113-236 (390)
98 PRK11805 N5-glutamine S-adenos 99.0 6.8E-09 1.5E-13 95.8 13.7 94 203-296 135-261 (307)
99 PRK13942 protein-L-isoaspartat 99.0 2.7E-09 5.8E-14 93.4 10.3 100 190-298 66-176 (212)
100 PRK00377 cbiT cobalt-precorrin 99.0 5.2E-09 1.1E-13 90.7 11.9 97 194-296 34-143 (198)
101 KOG1271 Methyltransferases [Ge 99.0 2.1E-09 4.6E-14 88.2 8.3 122 203-354 69-207 (227)
102 PRK14967 putative methyltransf 99.0 1.4E-08 3.1E-13 89.6 14.2 101 199-300 34-161 (223)
103 TIGR00080 pimt protein-L-isoas 99.0 3.7E-09 8E-14 92.9 10.3 99 190-297 67-176 (215)
104 TIGR00406 prmA ribosomal prote 99.0 7.3E-09 1.6E-13 95.0 12.2 118 201-354 159-285 (288)
105 PRK07402 precorrin-6B methylas 99.0 5.5E-09 1.2E-13 90.4 10.4 101 192-299 32-143 (196)
106 PRK01544 bifunctional N5-gluta 98.9 8.6E-09 1.9E-13 101.5 12.8 123 202-354 139-295 (506)
107 COG2264 PrmA Ribosomal protein 98.9 1.4E-08 3E-13 91.7 12.8 125 200-359 161-295 (300)
108 TIGR03704 PrmC_rel_meth putati 98.9 3.1E-08 6.6E-13 88.9 14.3 121 202-352 87-240 (251)
109 PRK13256 thiopurine S-methyltr 98.9 2.4E-08 5.3E-13 87.3 13.0 101 199-301 41-166 (226)
110 PF06325 PrmA: Ribosomal prote 98.9 5.7E-09 1.2E-13 95.0 9.2 125 200-364 160-294 (295)
111 PRK04457 spermidine synthase; 98.9 3.6E-09 7.9E-14 95.5 7.9 97 200-297 65-176 (262)
112 COG4976 Predicted methyltransf 98.9 5.1E-09 1.1E-13 89.1 8.1 146 189-353 114-266 (287)
113 TIGR00438 rrmJ cell division p 98.9 1.1E-08 2.3E-13 88.0 10.3 103 191-297 22-145 (188)
114 cd02440 AdoMet_MTases S-adenos 98.9 1.2E-08 2.6E-13 77.6 9.3 92 204-297 1-103 (107)
115 PF13659 Methyltransf_26: Meth 98.9 3E-09 6.6E-14 83.8 5.2 95 203-298 2-115 (117)
116 TIGR01177 conserved hypothetic 98.9 3.4E-08 7.3E-13 92.4 12.9 105 191-298 173-294 (329)
117 KOG2899 Predicted methyltransf 98.9 1.3E-08 2.7E-13 87.5 8.8 98 199-296 56-207 (288)
118 PF05724 TPMT: Thiopurine S-me 98.8 5.2E-08 1.1E-12 85.3 11.5 139 191-352 28-190 (218)
119 PF04672 Methyltransf_19: S-ad 98.8 2.6E-08 5.7E-13 88.3 9.4 153 189-349 56-233 (267)
120 PRK10611 chemotaxis methyltran 98.8 1.9E-07 4.1E-12 84.8 14.9 98 201-298 115-262 (287)
121 PF01739 CheR: CheR methyltran 98.8 8.4E-09 1.8E-13 88.5 5.7 99 201-299 31-176 (196)
122 PF08100 Dimerisation: Dimeris 98.8 8.6E-09 1.9E-13 67.5 4.2 51 35-86 1-51 (51)
123 PRK00811 spermidine synthase; 98.8 2.5E-08 5.5E-13 91.1 8.9 98 200-297 75-190 (283)
124 PRK00312 pcm protein-L-isoaspa 98.8 4.7E-08 1E-12 85.7 10.2 98 191-299 69-176 (212)
125 COG2890 HemK Methylase of poly 98.8 3E-07 6.5E-12 83.7 15.5 130 204-363 113-275 (280)
126 COG2519 GCD14 tRNA(1-methylade 98.8 8.3E-08 1.8E-12 83.7 11.1 105 190-302 84-199 (256)
127 KOG3010 Methyltransferase [Gen 98.7 5.3E-08 1.1E-12 83.8 7.8 92 203-299 35-138 (261)
128 PF05219 DREV: DREV methyltran 98.7 3.4E-07 7.5E-12 80.3 12.2 141 201-354 94-242 (265)
129 PRK03612 spermidine synthase; 98.7 2.1E-07 4.6E-12 92.2 12.3 98 200-298 296-415 (521)
130 PRK01581 speE spermidine synth 98.7 9.7E-08 2.1E-12 88.5 9.1 99 199-297 148-267 (374)
131 COG1352 CheR Methylase of chem 98.6 1.3E-06 2.9E-11 78.3 15.6 98 201-298 96-241 (268)
132 PLN02366 spermidine synthase 98.6 1.6E-07 3.5E-12 86.4 9.6 97 200-297 90-205 (308)
133 PRK13943 protein-L-isoaspartat 98.6 1.5E-07 3.2E-12 87.1 9.2 99 191-298 71-180 (322)
134 COG2518 Pcm Protein-L-isoaspar 98.6 3.2E-07 7E-12 78.3 10.2 100 189-299 61-170 (209)
135 TIGR00417 speE spermidine synt 98.6 1.3E-07 2.9E-12 85.9 8.1 98 200-297 71-185 (270)
136 KOG1541 Predicted protein carb 98.6 1.2E-07 2.7E-12 80.4 6.8 95 201-297 50-159 (270)
137 PLN02781 Probable caffeoyl-CoA 98.6 5.3E-07 1.2E-11 80.1 11.2 98 199-301 66-181 (234)
138 smart00650 rADc Ribosomal RNA 98.6 2.3E-07 5E-12 78.2 8.1 103 190-298 3-113 (169)
139 PF02390 Methyltransf_4: Putat 98.5 1.6E-07 3.4E-12 80.9 6.1 95 203-298 19-133 (195)
140 PHA03412 putative methyltransf 98.5 5.3E-07 1.2E-11 78.7 9.2 94 202-296 50-160 (241)
141 PLN02672 methionine S-methyltr 98.5 1.1E-06 2.4E-11 92.3 13.0 122 202-353 119-304 (1082)
142 PF11968 DUF3321: Putative met 98.5 3.8E-06 8.2E-11 71.9 13.8 120 202-354 52-183 (219)
143 PRK10901 16S rRNA methyltransf 98.5 1E-06 2.3E-11 85.3 11.3 108 192-300 236-374 (427)
144 PF01135 PCMT: Protein-L-isoas 98.5 1.7E-07 3.7E-12 81.4 5.2 102 189-299 61-173 (209)
145 PF08704 GCD14: tRNA methyltra 98.5 6.5E-07 1.4E-11 79.4 8.3 126 191-353 31-172 (247)
146 TIGR00563 rsmB ribosomal RNA s 98.4 9.9E-07 2.2E-11 85.5 10.2 110 192-302 230-372 (426)
147 PRK14902 16S rRNA methyltransf 98.4 1.1E-06 2.4E-11 85.6 10.5 106 194-300 244-381 (444)
148 PLN02476 O-methyltransferase 98.4 4.9E-06 1.1E-10 75.1 12.6 99 199-302 116-232 (278)
149 PRK14901 16S rRNA methyltransf 98.4 1.9E-06 4.2E-11 83.7 10.6 107 194-301 246-387 (434)
150 PRK14904 16S rRNA methyltransf 98.4 2.2E-06 4.7E-11 83.6 10.9 103 199-301 248-380 (445)
151 PF03291 Pox_MCEL: mRNA cappin 98.4 4.3E-07 9.2E-12 84.4 5.5 98 201-299 62-187 (331)
152 COG0220 Predicted S-adenosylme 98.3 3E-06 6.4E-11 74.4 8.3 95 203-298 50-164 (227)
153 PRK14903 16S rRNA methyltransf 98.3 4.8E-06 1E-10 80.6 10.3 104 199-302 235-370 (431)
154 TIGR00446 nop2p NOL1/NOP2/sun 98.3 6.1E-06 1.3E-10 74.8 10.0 103 199-301 69-202 (264)
155 COG4122 Predicted O-methyltran 98.3 3.8E-06 8.3E-11 72.8 8.2 99 199-302 57-170 (219)
156 PF08123 DOT1: Histone methyla 98.2 2.8E-06 6.1E-11 73.5 7.0 111 190-304 32-164 (205)
157 PRK11727 23S rRNA mA1618 methy 98.2 8.1E-06 1.8E-10 75.3 10.2 144 201-353 114-293 (321)
158 PF10294 Methyltransf_16: Puta 98.2 3.1E-06 6.7E-11 71.6 6.3 101 199-301 43-159 (173)
159 PF09243 Rsm22: Mitochondrial 98.2 9E-06 2E-10 73.9 9.6 112 189-303 22-144 (274)
160 TIGR00755 ksgA dimethyladenosi 98.2 7.8E-06 1.7E-10 73.6 9.1 91 189-286 18-116 (253)
161 PF01596 Methyltransf_3: O-met 98.2 1.6E-06 3.4E-11 75.1 4.2 97 200-301 44-158 (205)
162 PRK14896 ksgA 16S ribosomal RN 98.2 1E-05 2.2E-10 73.0 9.4 82 189-274 18-105 (258)
163 KOG1500 Protein arginine N-met 98.2 4.9E-06 1.1E-10 74.9 7.0 94 202-296 178-280 (517)
164 COG3963 Phospholipid N-methylt 98.2 2.7E-05 5.9E-10 63.5 10.5 112 188-300 36-158 (194)
165 PRK00274 ksgA 16S ribosomal RN 98.2 7.4E-06 1.6E-10 74.6 8.3 81 190-274 32-119 (272)
166 PF05185 PRMT5: PRMT5 arginine 98.1 3.7E-06 8.1E-11 81.3 6.2 126 163-295 152-294 (448)
167 PLN02823 spermine synthase 98.1 8.2E-06 1.8E-10 76.0 7.9 97 200-297 102-219 (336)
168 PRK13168 rumA 23S rRNA m(5)U19 98.1 2.2E-05 4.8E-10 76.6 11.2 100 189-297 286-399 (443)
169 PRK10909 rsmD 16S rRNA m(2)G96 98.1 1.1E-05 2.3E-10 69.6 7.8 94 201-298 53-159 (199)
170 KOG1975 mRNA cap methyltransfe 98.1 1.1E-05 2.4E-10 72.5 7.7 104 191-297 109-236 (389)
171 KOG3191 Predicted N6-DNA-methy 98.1 9.1E-05 2E-09 61.3 11.9 134 202-364 44-208 (209)
172 KOG1331 Predicted methyltransf 98.1 8.5E-06 1.8E-10 72.3 6.3 94 201-298 45-143 (293)
173 KOG2904 Predicted methyltransf 98.0 3.7E-05 8E-10 67.7 9.8 99 199-297 146-284 (328)
174 COG0421 SpeE Spermidine syntha 98.0 1.7E-05 3.7E-10 71.9 8.1 97 200-297 75-189 (282)
175 PTZ00338 dimethyladenosine tra 98.0 2.5E-05 5.5E-10 71.5 8.7 89 189-281 25-122 (294)
176 TIGR00478 tly hemolysin TlyA f 98.0 0.00015 3.2E-09 63.9 13.1 146 188-354 62-219 (228)
177 PLN02589 caffeoyl-CoA O-methyl 98.0 2.1E-05 4.5E-10 70.1 7.6 98 199-301 77-193 (247)
178 PRK00536 speE spermidine synth 98.0 3.4E-05 7.4E-10 69.1 8.7 90 199-298 70-171 (262)
179 TIGR03439 methyl_EasF probable 98.0 4.6E-05 1E-09 70.4 9.4 104 190-296 68-195 (319)
180 PRK15128 23S rRNA m(5)C1962 me 97.9 3.8E-05 8.3E-10 73.3 8.7 97 201-298 220-339 (396)
181 KOG2940 Predicted methyltransf 97.9 3E-05 6.6E-10 66.4 6.7 141 201-351 72-226 (325)
182 PRK11783 rlmL 23S rRNA m(2)G24 97.9 3.2E-05 6.8E-10 79.6 8.2 96 201-297 538-655 (702)
183 PRK04148 hypothetical protein; 97.9 0.00016 3.5E-09 57.7 10.3 100 191-301 7-112 (134)
184 PRK01544 bifunctional N5-gluta 97.9 2.7E-05 5.9E-10 76.9 7.2 97 201-298 347-462 (506)
185 PF03141 Methyltransf_29: Puta 97.9 1.7E-05 3.6E-10 75.8 5.3 98 201-302 117-223 (506)
186 KOG1499 Protein arginine N-met 97.9 2.2E-05 4.7E-10 71.8 5.5 94 201-295 60-164 (346)
187 COG2263 Predicted RNA methylas 97.8 4.9E-05 1.1E-09 63.6 6.7 86 201-287 45-136 (198)
188 COG0293 FtsJ 23S rRNA methylas 97.8 0.00022 4.7E-09 61.1 10.6 115 182-300 26-161 (205)
189 PRK03522 rumB 23S rRNA methylu 97.8 7.2E-05 1.6E-09 69.6 8.3 64 201-266 173-247 (315)
190 PF07942 N2227: N2227-like pro 97.8 0.00094 2E-08 60.0 14.8 136 201-352 56-242 (270)
191 PF01564 Spermine_synth: Sperm 97.8 2.3E-05 5E-10 70.1 4.3 99 200-298 75-191 (246)
192 KOG1661 Protein-L-isoaspartate 97.8 5.1E-05 1.1E-09 64.3 5.7 91 199-297 80-192 (237)
193 COG2521 Predicted archaeal met 97.7 0.00051 1.1E-08 59.3 10.9 129 199-355 132-280 (287)
194 PF04816 DUF633: Family of unk 97.7 0.00038 8.3E-09 60.2 10.2 126 205-365 1-140 (205)
195 COG0030 KsgA Dimethyladenosine 97.7 0.00034 7.4E-09 62.3 10.0 93 189-282 19-117 (259)
196 TIGR00479 rumA 23S rRNA (uraci 97.6 0.00025 5.4E-09 69.1 9.5 98 191-296 283-394 (431)
197 TIGR00095 RNA methyltransferas 97.6 0.00022 4.9E-09 61.1 7.7 94 201-299 49-159 (189)
198 KOG3115 Methyltransferase-like 97.6 8.8E-05 1.9E-09 62.4 4.3 100 201-300 60-185 (249)
199 PF01728 FtsJ: FtsJ-like methy 97.5 0.00015 3.2E-09 61.8 5.7 108 188-299 8-140 (181)
200 PRK11760 putative 23S rRNA C24 97.5 0.0073 1.6E-07 55.8 15.8 92 200-299 210-305 (357)
201 KOG0820 Ribosomal RNA adenine 97.5 0.00028 6.1E-09 62.2 6.3 75 189-265 47-129 (315)
202 TIGR02085 meth_trns_rumB 23S r 97.5 0.00041 8.9E-09 66.1 8.0 90 201-297 233-333 (374)
203 COG4798 Predicted methyltransf 97.4 0.0015 3.3E-08 54.8 10.0 139 198-351 45-204 (238)
204 COG0357 GidB Predicted S-adeno 97.4 0.0019 4E-08 56.1 10.6 119 202-353 68-196 (215)
205 KOG2798 Putative trehalase [Ca 97.3 0.0046 1E-07 55.8 12.6 138 201-353 150-338 (369)
206 PRK00050 16S rRNA m(4)C1402 me 97.3 0.00045 9.7E-09 63.1 6.4 66 189-255 8-79 (296)
207 PF02527 GidB: rRNA small subu 97.3 0.00014 3.1E-09 61.8 2.9 89 204-298 51-148 (184)
208 KOG3987 Uncharacterized conser 97.3 0.00013 2.7E-09 61.7 2.4 140 201-353 112-261 (288)
209 COG5459 Predicted rRNA methyla 97.3 0.00032 6.9E-09 63.9 4.5 110 191-301 104-228 (484)
210 TIGR00027 mthyl_TIGR00027 meth 97.2 0.0061 1.3E-07 55.0 11.8 148 200-350 80-248 (260)
211 KOG4589 Cell division protein 97.1 0.0028 6.1E-08 52.9 8.4 104 191-299 59-185 (232)
212 PRK04338 N(2),N(2)-dimethylgua 97.1 0.0014 3E-08 62.5 7.6 90 202-297 58-157 (382)
213 COG4301 Uncharacterized conser 97.1 0.0027 5.9E-08 55.3 8.1 97 201-297 78-192 (321)
214 KOG3201 Uncharacterized conser 97.0 0.00035 7.7E-09 56.7 2.2 96 202-299 30-141 (201)
215 COG0500 SmtA SAM-dependent met 97.0 0.0067 1.5E-07 49.3 9.5 95 205-303 52-160 (257)
216 COG1889 NOP1 Fibrillarin-like 97.0 0.049 1.1E-06 46.3 14.3 144 196-364 72-229 (231)
217 COG2384 Predicted SAM-dependen 96.9 0.03 6.6E-07 48.3 13.1 119 201-354 16-145 (226)
218 PF01170 UPF0020: Putative RNA 96.9 0.0034 7.3E-08 53.3 7.4 105 191-296 19-149 (179)
219 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.9 0.0016 3.5E-08 58.1 5.5 103 248-364 138-256 (256)
220 PF00398 RrnaAD: Ribosomal RNA 96.9 0.0032 7E-08 56.9 7.6 96 188-290 18-123 (262)
221 COG4262 Predicted spermidine s 96.9 0.005 1.1E-07 56.7 8.6 94 200-299 288-408 (508)
222 KOG3420 Predicted RNA methylas 96.9 0.001 2.3E-08 53.0 3.7 68 201-269 48-124 (185)
223 PF09339 HTH_IclR: IclR helix- 96.9 0.00031 6.7E-09 46.5 0.6 45 43-93 6-50 (52)
224 KOG2915 tRNA(1-methyladenosine 96.9 0.021 4.5E-07 50.7 11.9 116 177-300 78-212 (314)
225 PLN02668 indole-3-acetate carb 96.9 0.048 1E-06 51.7 15.1 102 201-302 63-241 (386)
226 PF13679 Methyltransf_32: Meth 96.8 0.0049 1.1E-07 50.1 7.4 94 199-299 23-132 (141)
227 KOG1709 Guanidinoacetate methy 96.8 0.01 2.2E-07 50.8 9.2 101 200-303 100-211 (271)
228 COG3315 O-Methyltransferase in 96.8 0.005 1.1E-07 56.5 8.0 149 201-350 92-262 (297)
229 COG4076 Predicted RNA methylas 96.8 0.0021 4.6E-08 53.6 4.9 95 203-299 34-136 (252)
230 KOG1269 SAM-dependent methyltr 96.8 0.0015 3.3E-08 61.4 4.5 100 201-303 110-220 (364)
231 PF11312 DUF3115: Protein of u 96.8 0.0066 1.4E-07 55.2 8.3 100 202-301 87-245 (315)
232 PRK11933 yebU rRNA (cytosine-C 96.8 0.0089 1.9E-07 58.4 9.8 102 199-300 111-244 (470)
233 COG1189 Predicted rRNA methyla 96.7 0.088 1.9E-06 46.0 14.3 150 189-353 67-225 (245)
234 PRK10141 DNA-binding transcrip 96.6 0.0018 3.9E-08 50.6 3.1 69 31-111 7-75 (117)
235 PF01269 Fibrillarin: Fibrilla 96.6 0.019 4.1E-07 49.7 9.5 141 199-363 71-226 (229)
236 PF12840 HTH_20: Helix-turn-he 96.5 0.0019 4.2E-08 44.2 2.3 55 33-94 3-57 (61)
237 smart00550 Zalpha Z-DNA-bindin 96.4 0.0052 1.1E-07 43.1 4.2 59 40-111 6-66 (68)
238 smart00346 HTH_ICLR helix_turn 96.4 0.0046 9.9E-08 46.0 4.1 59 42-113 7-65 (91)
239 PF03059 NAS: Nicotianamine sy 96.3 0.011 2.3E-07 53.4 6.6 96 201-297 120-229 (276)
240 PF01022 HTH_5: Bacterial regu 96.3 0.0021 4.6E-08 41.5 1.4 43 42-92 4-46 (47)
241 PF02475 Met_10: Met-10+ like- 96.3 0.0049 1.1E-07 53.1 4.1 90 199-294 99-198 (200)
242 COG3897 Predicted methyltransf 96.3 0.034 7.3E-07 47.0 8.8 107 192-302 70-183 (218)
243 TIGR01444 fkbM_fam methyltrans 96.1 0.0063 1.4E-07 49.4 3.9 52 204-255 1-59 (143)
244 PF02384 N6_Mtase: N-6 DNA Met 96.1 0.011 2.4E-07 54.8 5.8 101 199-299 44-184 (311)
245 PF13578 Methyltransf_24: Meth 96.1 0.002 4.3E-08 49.6 0.6 90 206-298 1-105 (106)
246 TIGR02987 met_A_Alw26 type II 96.1 0.019 4.2E-07 57.4 7.8 67 201-267 31-120 (524)
247 TIGR02143 trmA_only tRNA (urac 96.1 0.0077 1.7E-07 56.9 4.6 51 203-255 199-256 (353)
248 PHA00738 putative HTH transcri 96.1 0.0065 1.4E-07 46.0 3.3 61 40-112 12-72 (108)
249 PF09445 Methyltransf_15: RNA 96.0 0.0028 6.1E-08 52.6 1.3 62 204-267 2-77 (163)
250 PRK11783 rlmL 23S rRNA m(2)G24 96.0 0.045 9.8E-07 56.6 10.1 111 188-299 177-348 (702)
251 PF02082 Rrf2: Transcriptional 95.9 0.0066 1.4E-07 44.5 2.8 48 56-113 24-71 (83)
252 COG1041 Predicted DNA modifica 95.9 0.095 2.1E-06 48.6 10.8 106 192-299 188-311 (347)
253 PF13412 HTH_24: Winged helix- 95.9 0.0078 1.7E-07 38.9 2.8 45 41-92 4-48 (48)
254 COG1092 Predicted SAM-dependen 95.9 0.027 5.9E-07 53.5 7.3 97 201-299 217-337 (393)
255 COG1414 IclR Transcriptional r 95.9 0.0095 2.1E-07 53.3 4.1 60 43-115 7-66 (246)
256 KOG2918 Carboxymethyl transfer 95.8 0.13 2.8E-06 46.7 10.8 150 199-352 85-277 (335)
257 TIGR02431 pcaR_pcaU beta-ketoa 95.8 0.0093 2E-07 53.5 3.6 59 43-116 12-70 (248)
258 KOG1663 O-methyltransferase [S 95.8 0.063 1.4E-06 46.6 8.4 99 200-303 72-188 (237)
259 PF03141 Methyltransf_29: Puta 95.6 0.073 1.6E-06 51.5 9.2 133 199-364 363-506 (506)
260 COG4627 Uncharacterized protei 95.6 0.0042 9.2E-08 50.2 0.7 79 205-299 6-87 (185)
261 PRK05031 tRNA (uracil-5-)-meth 95.6 0.014 3E-07 55.4 4.3 51 203-255 208-265 (362)
262 PRK11569 transcriptional repre 95.6 0.014 3E-07 53.2 4.1 60 43-115 31-90 (274)
263 PF04989 CmcI: Cephalosporin h 95.6 0.069 1.5E-06 46.0 8.0 98 202-301 33-150 (206)
264 PRK10163 DNA-binding transcrip 95.3 0.019 4.1E-07 52.2 4.1 59 43-114 28-86 (271)
265 PRK15090 DNA-binding transcrip 95.3 0.018 3.8E-07 52.0 3.8 59 43-115 17-75 (257)
266 PF14947 HTH_45: Winged helix- 95.3 0.017 3.6E-07 41.6 2.9 57 45-118 11-67 (77)
267 PF03602 Cons_hypoth95: Conser 95.3 0.012 2.6E-07 50.1 2.4 94 201-297 42-152 (183)
268 PF13463 HTH_27: Winged helix 95.2 0.019 4.1E-07 40.0 3.0 62 42-112 5-67 (68)
269 PF04072 LCM: Leucine carboxyl 95.2 0.061 1.3E-06 45.8 6.5 84 201-284 78-182 (183)
270 PF03492 Methyltransf_7: SAM d 95.1 0.21 4.7E-06 46.8 10.6 105 199-303 14-188 (334)
271 PF07091 FmrO: Ribosomal RNA m 95.1 0.023 4.9E-07 50.2 3.8 99 200-300 104-210 (251)
272 TIGR00308 TRM1 tRNA(guanine-26 95.1 0.062 1.3E-06 51.1 7.0 91 202-298 45-147 (374)
273 PRK09834 DNA-binding transcrip 95.1 0.024 5.2E-07 51.3 4.0 63 42-117 13-75 (263)
274 PF07757 AdoMet_MTase: Predict 95.1 0.031 6.7E-07 42.4 3.8 32 200-233 57-88 (112)
275 PF09012 FeoC: FeoC like trans 95.1 0.022 4.7E-07 40.1 2.9 43 45-94 5-47 (69)
276 smart00419 HTH_CRP helix_turn_ 95.0 0.022 4.7E-07 36.5 2.6 33 57-93 8-40 (48)
277 PF13601 HTH_34: Winged helix 95.0 0.014 3.1E-07 42.3 1.7 69 41-117 1-69 (80)
278 PF01978 TrmB: Sugar-specific 94.9 0.01 2.3E-07 41.5 0.9 47 41-94 9-55 (68)
279 COG1959 Predicted transcriptio 94.7 0.045 9.7E-07 45.0 4.2 57 48-114 16-72 (150)
280 COG3355 Predicted transcriptio 94.7 0.044 9.5E-07 43.1 3.9 47 42-95 29-76 (126)
281 cd00092 HTH_CRP helix_turn_hel 94.6 0.037 8.1E-07 38.3 3.0 35 56-94 24-58 (67)
282 KOG1562 Spermidine synthase [A 94.5 0.078 1.7E-06 47.7 5.5 100 199-299 119-237 (337)
283 COG2265 TrmA SAM-dependent met 94.5 0.14 3E-06 49.6 7.7 98 191-297 284-395 (432)
284 PF04703 FaeA: FaeA-like prote 94.4 0.031 6.6E-07 38.3 2.1 45 44-94 4-48 (62)
285 PRK11512 DNA-binding transcrip 94.4 0.054 1.2E-06 44.1 4.1 68 41-117 41-108 (144)
286 PF12802 MarR_2: MarR family; 94.1 0.03 6.6E-07 38.2 1.7 47 41-94 6-54 (62)
287 TIGR00006 S-adenosyl-methyltra 94.1 0.13 2.8E-06 47.3 6.2 66 189-255 9-80 (305)
288 COG2520 Predicted methyltransf 94.1 0.32 7E-06 45.3 8.9 96 201-303 188-294 (341)
289 COG2345 Predicted transcriptio 94.0 0.058 1.3E-06 46.7 3.6 63 44-115 15-79 (218)
290 TIGR02337 HpaR homoprotocatech 94.0 0.089 1.9E-06 41.2 4.4 71 39-118 27-97 (118)
291 smart00347 HTH_MARR helix_turn 93.9 0.077 1.7E-06 39.8 3.8 68 41-117 11-78 (101)
292 TIGR00738 rrf2_super rrf2 fami 93.9 0.084 1.8E-06 42.2 4.2 48 56-113 24-71 (132)
293 COG4189 Predicted transcriptio 93.8 0.1 2.3E-06 45.0 4.7 56 31-93 14-69 (308)
294 TIGR02702 SufR_cyano iron-sulf 93.7 0.088 1.9E-06 45.6 4.3 68 43-117 4-71 (203)
295 PRK10857 DNA-binding transcrip 93.7 0.11 2.3E-06 43.4 4.5 47 56-112 24-70 (164)
296 PF10672 Methyltrans_SAM: S-ad 93.7 0.079 1.7E-06 48.3 4.0 98 201-299 123-239 (286)
297 KOG2793 Putative N2,N2-dimethy 93.7 0.43 9.3E-06 42.4 8.5 99 201-302 86-203 (248)
298 PF04967 HTH_10: HTH DNA bindi 93.7 0.072 1.6E-06 35.2 2.7 43 33-85 5-47 (53)
299 COG4190 Predicted transcriptio 93.7 0.098 2.1E-06 41.0 3.9 58 30-94 54-111 (144)
300 TIGR02010 IscR iron-sulfur clu 93.6 0.08 1.7E-06 42.7 3.6 48 56-113 24-71 (135)
301 COG0742 N6-adenine-specific me 93.6 0.39 8.5E-06 40.7 7.8 97 201-298 43-154 (187)
302 KOG0822 Protein kinase inhibit 93.5 0.43 9.4E-06 46.5 8.6 127 162-296 333-476 (649)
303 PF01047 MarR: MarR family; I 93.4 0.043 9.3E-07 37.0 1.4 46 42-94 5-50 (59)
304 COG0116 Predicted N6-adenine-s 93.3 0.64 1.4E-05 43.8 9.4 109 189-298 180-344 (381)
305 KOG2352 Predicted spermine/spe 93.3 0.35 7.5E-06 46.8 7.8 101 203-304 50-169 (482)
306 KOG2730 Methylase [General fun 93.2 0.071 1.5E-06 45.9 2.7 90 201-292 94-196 (263)
307 PF01795 Methyltransf_5: MraW 93.0 0.19 4.2E-06 46.2 5.4 65 189-254 9-79 (310)
308 PF06859 Bin3: Bicoid-interact 93.0 0.04 8.7E-07 42.1 0.9 85 261-353 3-93 (110)
309 KOG3924 Putative protein methy 92.8 0.27 5.9E-06 46.1 6.0 109 191-303 183-313 (419)
310 COG4742 Predicted transcriptio 92.8 0.16 3.4E-06 45.3 4.4 66 36-118 9-74 (260)
311 KOG4058 Uncharacterized conser 92.6 0.31 6.7E-06 39.3 5.3 107 190-303 62-177 (199)
312 PRK03902 manganese transport t 92.6 0.18 3.8E-06 41.0 4.2 50 56-117 21-70 (142)
313 PRK06266 transcription initiat 92.5 0.26 5.6E-06 41.7 5.1 45 42-93 24-68 (178)
314 PF08220 HTH_DeoR: DeoR-like h 92.5 0.15 3.2E-06 34.3 3.0 44 44-94 4-47 (57)
315 KOG1099 SAM-dependent methyltr 92.4 0.28 6E-06 42.6 5.2 101 192-296 32-161 (294)
316 smart00420 HTH_DEOR helix_turn 92.4 0.2 4.4E-06 32.5 3.6 42 45-93 5-46 (53)
317 PF03514 GRAS: GRAS domain fam 91.9 0.73 1.6E-05 43.9 8.1 43 190-233 100-149 (374)
318 smart00344 HTH_ASNC helix_turn 91.9 0.2 4.3E-06 38.4 3.5 46 41-93 4-49 (108)
319 PRK11014 transcriptional repre 91.8 0.15 3.3E-06 41.4 2.9 46 56-111 24-69 (141)
320 PRK11050 manganese transport r 91.7 0.94 2E-05 37.2 7.5 79 19-117 21-99 (152)
321 TIGR02944 suf_reg_Xantho FeS a 91.6 0.18 4E-06 40.2 3.2 46 56-111 24-69 (130)
322 PF01638 HxlR: HxlR-like helix 91.3 0.19 4.2E-06 37.2 2.8 64 45-118 10-74 (90)
323 PF08461 HTH_12: Ribonuclease 91.3 0.31 6.7E-06 33.9 3.6 60 45-114 3-63 (66)
324 COG1321 TroR Mn-dependent tran 91.1 0.32 6.9E-06 40.1 4.2 51 56-118 23-73 (154)
325 PRK11920 rirA iron-responsive 91.1 0.23 5E-06 40.9 3.3 48 56-113 23-70 (153)
326 KOG2187 tRNA uracil-5-methyltr 91.1 0.28 6E-06 47.6 4.2 55 199-255 381-442 (534)
327 PRK06474 hypothetical protein; 90.9 0.32 6.9E-06 41.2 4.1 75 34-114 5-80 (178)
328 PF05958 tRNA_U5-meth_tr: tRNA 90.7 0.21 4.6E-06 47.2 3.1 62 188-253 185-253 (352)
329 COG1064 AdhP Zn-dependent alco 90.6 2.1 4.6E-05 40.0 9.4 93 199-301 164-262 (339)
330 COG0144 Sun tRNA and rRNA cyto 90.6 2.3 5E-05 40.2 10.0 103 199-301 154-291 (355)
331 TIGR01889 Staph_reg_Sar staphy 90.6 0.4 8.6E-06 37.0 4.0 50 40-94 25-76 (109)
332 PF11899 DUF3419: Protein of u 90.3 0.5 1.1E-05 45.0 5.3 60 244-303 275-339 (380)
333 PF00325 Crp: Bacterial regula 90.2 0.18 4E-06 29.4 1.4 31 57-91 2-32 (32)
334 PRK03573 transcriptional regul 89.9 2.1 4.5E-05 34.6 8.0 66 44-117 35-100 (144)
335 TIGR01884 cas_HTH CRISPR locus 89.7 0.39 8.4E-06 41.6 3.7 59 41-112 144-202 (203)
336 PRK15431 ferrous iron transpor 89.6 0.47 1E-05 33.8 3.3 43 45-94 7-49 (78)
337 PF01325 Fe_dep_repress: Iron 89.5 0.33 7.3E-06 33.0 2.5 35 56-94 21-55 (60)
338 PF06962 rRNA_methylase: Putat 89.3 0.41 8.8E-06 38.6 3.2 72 227-300 1-94 (140)
339 PF01861 DUF43: Protein of unk 89.0 8.3 0.00018 34.1 11.3 92 201-296 44-146 (243)
340 TIGR00122 birA_repr_reg BirA b 88.9 0.5 1.1E-05 33.0 3.2 44 42-93 2-45 (69)
341 smart00418 HTH_ARSR helix_turn 88.7 0.64 1.4E-05 31.3 3.6 42 45-94 2-43 (66)
342 PF01726 LexA_DNA_bind: LexA D 88.7 0.44 9.5E-06 33.0 2.6 36 56-94 24-59 (65)
343 cd08283 FDH_like_1 Glutathione 88.5 3.3 7.1E-05 39.6 9.6 100 199-300 182-308 (386)
344 TIGR00373 conserved hypothetic 88.1 0.61 1.3E-05 38.6 3.6 45 43-94 17-61 (158)
345 PF06163 DUF977: Bacterial pro 87.9 0.82 1.8E-05 35.7 3.9 49 38-93 10-58 (127)
346 PF08279 HTH_11: HTH domain; 87.9 0.69 1.5E-05 30.5 3.2 40 44-89 4-43 (55)
347 PHA02943 hypothetical protein; 87.6 0.68 1.5E-05 37.4 3.4 43 44-94 15-57 (165)
348 cd00090 HTH_ARSR Arsenical Res 87.4 0.79 1.7E-05 31.9 3.5 45 42-94 9-53 (78)
349 COG0275 Predicted S-adenosylme 87.3 1.5 3.2E-05 40.0 5.8 66 188-254 11-83 (314)
350 TIGR01610 phage_O_Nterm phage 86.5 0.7 1.5E-05 34.6 2.9 44 56-110 46-89 (95)
351 PRK01747 mnmC bifunctional tRN 86.0 1.3 2.8E-05 45.7 5.5 97 201-297 57-205 (662)
352 PF10354 DUF2431: Domain of un 85.9 15 0.00033 30.6 10.8 120 208-354 3-154 (166)
353 cd07153 Fur_like Ferric uptake 85.9 0.94 2E-05 35.1 3.4 51 42-94 3-54 (116)
354 PRK14165 winged helix-turn-hel 85.8 0.92 2E-05 39.6 3.6 53 56-117 20-72 (217)
355 smart00345 HTH_GNTR helix_turn 85.8 0.92 2E-05 30.1 3.0 33 57-93 19-52 (60)
356 PRK11179 DNA-binding transcrip 85.7 0.97 2.1E-05 37.2 3.6 47 40-93 9-55 (153)
357 PRK11169 leucine-responsive tr 85.6 0.84 1.8E-05 38.0 3.2 47 40-93 14-60 (164)
358 COG1063 Tdh Threonine dehydrog 85.2 5.1 0.00011 37.9 8.7 93 203-303 170-274 (350)
359 smart00529 HTH_DTXR Helix-turn 85.1 0.96 2.1E-05 33.7 3.1 46 60-117 2-47 (96)
360 COG3432 Predicted transcriptio 84.9 0.68 1.5E-05 34.5 2.0 54 56-118 30-83 (95)
361 PRK10870 transcriptional repre 84.8 1.1 2.5E-05 37.7 3.7 70 42-118 57-126 (176)
362 PF07381 DUF1495: Winged helix 84.6 1.5 3.2E-05 32.5 3.7 68 39-117 8-87 (90)
363 COG1522 Lrp Transcriptional re 84.1 1.2 2.7E-05 36.3 3.6 48 40-94 8-55 (154)
364 PF02002 TFIIE_alpha: TFIIE al 83.4 0.98 2.1E-05 34.5 2.5 43 44-93 17-59 (105)
365 PRK04172 pheS phenylalanyl-tRN 83.1 1.1 2.3E-05 44.5 3.2 68 41-121 7-74 (489)
366 cd07377 WHTH_GntR Winged helix 83.0 2 4.3E-05 29.1 3.7 32 58-93 26-57 (66)
367 PF01189 Nol1_Nop2_Fmu: NOL1/N 82.9 2.6 5.7E-05 38.5 5.5 101 199-299 83-220 (283)
368 COG1378 Predicted transcriptio 82.8 1.9 4E-05 38.6 4.3 62 40-114 16-77 (247)
369 COG1733 Predicted transcriptio 82.7 2.1 4.6E-05 33.6 4.2 79 20-117 12-91 (120)
370 PF08784 RPA_C: Replication pr 82.6 1.1 2.5E-05 33.9 2.6 50 40-93 47-97 (102)
371 PF07789 DUF1627: Protein of u 82.3 1.7 3.6E-05 35.0 3.3 47 56-111 5-51 (155)
372 PF05971 Methyltransf_10: Prot 82.1 1.6 3.4E-05 40.1 3.6 69 202-271 103-189 (299)
373 PRK13777 transcriptional regul 81.8 2.3 5.1E-05 36.1 4.4 66 43-117 48-113 (185)
374 COG1846 MarR Transcriptional r 81.6 1.9 4.2E-05 33.2 3.7 72 38-118 20-91 (126)
375 COG4565 CitB Response regulato 81.4 1.4 3E-05 38.0 2.8 35 56-94 172-206 (224)
376 PF03444 HrcA_DNA-bdg: Winged 81.3 3.4 7.3E-05 29.6 4.3 34 56-93 22-55 (78)
377 COG3510 CmcI Cephalosporin hyd 81.3 17 0.00038 31.0 9.1 104 201-306 69-188 (237)
378 PRK05638 threonine synthase; V 81.1 1.9 4.1E-05 42.2 4.1 64 42-117 373-438 (442)
379 PF05430 Methyltransf_30: S-ad 81.0 2.9 6.2E-05 33.1 4.4 55 278-365 70-124 (124)
380 PF12793 SgrR_N: Sugar transpo 80.9 1.8 3.9E-05 33.7 3.1 35 56-94 18-52 (115)
381 PLN02853 Probable phenylalanyl 80.8 1.7 3.7E-05 42.5 3.6 70 40-122 3-73 (492)
382 KOG1596 Fibrillarin and relate 80.7 8 0.00017 34.2 7.2 97 199-299 154-262 (317)
383 COG2933 Predicted SAM-dependen 80.1 5.1 0.00011 35.8 5.9 84 200-291 210-296 (358)
384 PF13545 HTH_Crp_2: Crp-like h 79.8 1.1 2.5E-05 31.6 1.6 35 56-94 27-61 (76)
385 PRK10742 putative methyltransf 79.6 3.6 7.7E-05 36.6 4.9 40 191-233 77-118 (250)
386 COG1255 Uncharacterized protei 79.4 18 0.00039 28.1 7.9 89 200-300 12-104 (129)
387 PRK09424 pntA NAD(P) transhydr 79.3 14 0.00031 36.7 9.5 94 201-299 164-286 (509)
388 COG1565 Uncharacterized conser 79.2 4.3 9.3E-05 38.1 5.5 59 170-233 51-117 (370)
389 PF13730 HTH_36: Helix-turn-he 78.9 1.8 4E-05 28.4 2.3 31 57-91 25-55 (55)
390 COG3413 Predicted DNA binding 78.2 1.8 4E-05 37.7 2.7 43 32-84 159-201 (215)
391 PF10007 DUF2250: Uncharacteri 78.2 2.8 6E-05 31.2 3.2 47 41-94 8-54 (92)
392 PF05711 TylF: Macrocin-O-meth 78.1 4.1 9E-05 36.4 4.9 97 201-299 74-213 (248)
393 PRK13509 transcriptional repre 78.1 2.4 5.2E-05 38.0 3.5 46 42-94 7-52 (251)
394 TIGR00498 lexA SOS regulatory 77.7 3.7 8E-05 35.3 4.4 49 41-93 7-58 (199)
395 PF05206 TRM13: Methyltransfer 77.7 4.9 0.00011 36.2 5.3 35 199-233 16-55 (259)
396 PF02153 PDH: Prephenate dehyd 77.4 4.2 9E-05 36.6 4.9 77 215-297 1-78 (258)
397 PRK10906 DNA-binding transcrip 77.1 2.3 5E-05 38.2 3.0 47 41-94 6-52 (252)
398 PF13404 HTH_AsnC-type: AsnC-t 76.9 2.9 6.3E-05 26.0 2.6 37 41-84 4-40 (42)
399 PF13518 HTH_28: Helix-turn-he 76.7 3.5 7.6E-05 26.5 3.1 32 57-92 12-43 (52)
400 PTZ00326 phenylalanyl-tRNA syn 75.8 3.3 7.2E-05 40.7 3.9 71 40-122 6-76 (494)
401 PF04182 B-block_TFIIIC: B-blo 75.8 3 6.6E-05 29.6 2.8 50 40-94 2-51 (75)
402 PRK10434 srlR DNA-bindng trans 75.1 2.7 5.8E-05 37.8 2.9 47 41-94 6-52 (256)
403 PF14740 DUF4471: Domain of un 75.0 3.4 7.3E-05 37.7 3.5 78 245-349 201-286 (289)
404 PRK07502 cyclohexadienyl dehyd 74.8 17 0.00036 33.5 8.3 91 202-297 6-99 (307)
405 KOG2539 Mitochondrial/chloropl 74.5 8.3 0.00018 37.4 6.1 99 201-299 200-316 (491)
406 COG0287 TyrA Prephenate dehydr 74.5 16 0.00035 33.3 7.8 87 203-295 4-95 (279)
407 PF13384 HTH_23: Homeodomain-l 74.2 2.3 5E-05 27.3 1.7 41 41-90 6-46 (50)
408 PRK09954 putative kinase; Prov 74.0 3.6 7.9E-05 38.9 3.7 44 42-92 5-48 (362)
409 PRK13699 putative methylase; P 73.8 15 0.00032 32.4 7.3 76 246-351 2-95 (227)
410 PRK09775 putative DNA-binding 73.7 3.7 7.9E-05 40.1 3.7 55 45-114 5-59 (442)
411 PF05331 DUF742: Protein of un 73.0 4.4 9.5E-05 31.5 3.2 40 45-93 48-87 (114)
412 cd01842 SGNH_hydrolase_like_5 72.9 7.6 0.00017 32.6 4.8 41 261-301 52-102 (183)
413 PF08221 HTH_9: RNA polymerase 72.7 2.8 6.1E-05 28.6 1.9 42 45-93 18-59 (62)
414 COG2512 Predicted membrane-ass 72.2 3.5 7.6E-05 37.0 2.9 47 42-94 197-243 (258)
415 PF11599 AviRa: RRNA methyltra 72.1 19 0.00041 31.4 7.1 99 200-298 50-214 (246)
416 PF02636 Methyltransf_28: Puta 71.9 6.3 0.00014 35.3 4.6 33 201-233 18-58 (252)
417 PF14394 DUF4423: Domain of un 71.9 5.7 0.00012 33.3 4.0 46 58-115 40-87 (171)
418 COG1568 Predicted methyltransf 71.9 14 0.0003 33.4 6.4 204 59-297 36-259 (354)
419 TIGR01321 TrpR trp operon repr 71.7 5.3 0.00012 29.7 3.3 41 38-86 40-80 (94)
420 PRK09802 DNA-binding transcrip 71.6 3.8 8.3E-05 37.1 3.1 47 41-94 18-64 (269)
421 KOG0024 Sorbitol dehydrogenase 71.0 39 0.00085 31.4 9.2 95 199-302 167-277 (354)
422 PF00392 GntR: Bacterial regul 70.7 2.8 6.1E-05 28.6 1.6 35 56-94 22-57 (64)
423 COG1510 Predicted transcriptio 70.7 4.4 9.5E-05 33.6 2.9 35 56-94 40-74 (177)
424 TIGR01202 bchC 2-desacetyl-2-h 70.5 29 0.00063 31.8 8.9 85 202-299 145-232 (308)
425 PRK04214 rbn ribonuclease BN/u 70.4 4.5 9.7E-05 39.2 3.5 34 56-93 309-342 (412)
426 PRK12423 LexA repressor; Provi 70.4 4.7 0.0001 34.8 3.3 35 57-94 25-59 (202)
427 COG1497 Predicted transcriptio 70.0 6.8 0.00015 34.4 4.1 49 57-117 25-73 (260)
428 PF09824 ArsR: ArsR transcript 69.2 6.6 0.00014 32.0 3.5 51 32-93 9-59 (160)
429 PF07109 Mg-por_mtran_C: Magne 69.1 24 0.00053 26.4 6.3 78 268-357 4-87 (97)
430 PF03686 UPF0146: Uncharacteri 69.0 8.6 0.00019 30.4 4.1 88 201-300 13-104 (127)
431 PF12324 HTH_15: Helix-turn-he 68.9 4.2 9.1E-05 29.0 2.1 35 45-86 29-63 (77)
432 TIGR02787 codY_Gpos GTP-sensin 68.5 5.7 0.00012 35.0 3.3 44 44-93 187-230 (251)
433 KOG2651 rRNA adenine N-6-methy 68.2 8.6 0.00019 36.3 4.5 42 191-233 143-184 (476)
434 COG2524 Predicted transcriptio 68.1 11 0.00024 33.5 5.0 52 56-117 24-75 (294)
435 cd00315 Cyt_C5_DNA_methylase C 68.1 34 0.00075 31.0 8.6 120 204-349 2-140 (275)
436 PRK10411 DNA-binding transcrip 67.8 5.7 0.00012 35.3 3.4 45 42-93 6-50 (240)
437 PF03428 RP-C: Replication pro 67.3 5.7 0.00012 33.5 3.0 33 57-93 70-103 (177)
438 PHA02701 ORF020 dsRNA-binding 66.8 7.7 0.00017 32.6 3.6 48 41-94 5-52 (183)
439 COG5631 Predicted transcriptio 66.8 25 0.00055 28.8 6.4 76 30-115 66-148 (199)
440 PRK10046 dpiA two-component re 65.0 7.2 0.00016 34.0 3.4 45 44-94 166-210 (225)
441 PF02796 HTH_7: Helix-turn-hel 64.6 8.5 0.00018 24.2 2.8 30 45-83 14-43 (45)
442 PRK04424 fatty acid biosynthes 64.5 5 0.00011 34.1 2.2 45 42-93 9-53 (185)
443 smart00531 TFIIE Transcription 64.2 8 0.00017 31.5 3.3 43 43-92 4-46 (147)
444 PRK11886 bifunctional biotin-- 64.1 7.4 0.00016 36.2 3.5 44 42-92 6-49 (319)
445 PF05584 Sulfolobus_pRN: Sulfo 64.0 12 0.00027 26.3 3.6 42 44-93 9-50 (72)
446 TIGR03879 near_KaiC_dom probab 63.9 5.3 0.00011 28.3 1.8 33 57-93 32-64 (73)
447 KOG1098 Putative SAM-dependent 63.8 9.9 0.00022 38.2 4.3 66 186-255 29-95 (780)
448 PF12692 Methyltransf_17: S-ad 63.7 10 0.00023 30.8 3.7 111 189-301 18-137 (160)
449 KOG1501 Arginine N-methyltrans 63.4 7.1 0.00015 37.5 3.1 41 201-242 66-107 (636)
450 PF08280 HTH_Mga: M protein tr 63.3 7.7 0.00017 26.1 2.5 39 41-86 6-44 (59)
451 PF05732 RepL: Firmicute plasm 63.2 6.2 0.00013 32.9 2.5 45 58-114 76-120 (165)
452 PF01475 FUR: Ferric uptake re 62.9 5.2 0.00011 31.2 1.9 67 39-111 7-74 (120)
453 PRK05225 ketol-acid reductoiso 62.6 9.4 0.0002 37.2 3.8 90 202-299 36-132 (487)
454 COG1675 TFA1 Transcription ini 62.3 9.5 0.00021 32.0 3.4 45 43-94 21-65 (176)
455 PRK09334 30S ribosomal protein 61.7 6.8 0.00015 28.7 2.1 46 45-94 28-74 (86)
456 COG1349 GlpR Transcriptional r 61.6 7.1 0.00015 35.0 2.8 46 42-94 7-52 (253)
457 PRK11753 DNA-binding transcrip 61.1 7.6 0.00017 33.3 2.8 33 57-93 168-200 (211)
458 TIGR00561 pntA NAD(P) transhyd 61.1 27 0.00058 34.8 6.8 92 201-296 163-282 (511)
459 PF02254 TrkA_N: TrkA-N domain 60.7 13 0.00027 28.5 3.8 81 210-296 4-94 (116)
460 PRK01381 Trp operon repressor; 60.5 11 0.00025 28.3 3.2 39 39-85 41-79 (99)
461 PF00165 HTH_AraC: Bacterial r 60.1 5.7 0.00012 24.4 1.4 28 56-87 7-34 (42)
462 cd08237 ribitol-5-phosphate_DH 59.9 43 0.00092 31.3 7.9 93 200-299 162-257 (341)
463 KOG1197 Predicted quinone oxid 59.7 38 0.00083 30.4 6.7 99 192-300 138-247 (336)
464 TIGR03433 padR_acidobact trans 59.2 21 0.00046 26.8 4.6 70 45-118 9-82 (100)
465 TIGR03697 NtcA_cyano global ni 59.1 8.2 0.00018 32.5 2.6 33 57-93 143-175 (193)
466 PF06557 DUF1122: Protein of u 58.6 20 0.00043 29.6 4.5 63 275-354 63-125 (170)
467 PF08222 HTH_CodY: CodY helix- 58.5 3.5 7.5E-05 27.4 0.1 34 56-93 3-36 (61)
468 PHA02591 hypothetical protein; 58.0 14 0.0003 26.3 3.0 30 46-83 52-81 (83)
469 PRK11161 fumarate/nitrate redu 57.2 9.3 0.0002 33.5 2.7 33 57-93 184-216 (235)
470 COG0640 ArsR Predicted transcr 56.9 17 0.00038 26.4 3.9 54 34-94 19-72 (110)
471 COG0604 Qor NADPH:quinone redu 56.6 28 0.00062 32.5 6.0 94 199-301 140-244 (326)
472 PF10668 Phage_terminase: Phag 56.3 14 0.00029 25.1 2.7 22 56-81 21-42 (60)
473 COG3398 Uncharacterized protei 55.6 34 0.00073 29.8 5.6 48 40-94 101-148 (240)
474 TIGR02147 Fsuc_second hypothet 55.2 16 0.00034 33.2 3.8 46 57-114 137-184 (271)
475 PF09821 AAA_assoc_C: C-termin 54.8 10 0.00022 29.8 2.3 46 62-120 2-47 (120)
476 KOG2920 Predicted methyltransf 54.1 8.7 0.00019 34.8 2.0 36 201-237 116-152 (282)
477 PRK09273 hypothetical protein; 53.9 15 0.00033 31.7 3.3 50 202-251 63-112 (211)
478 COG4901 Ribosomal protein S25 53.6 19 0.0004 27.1 3.3 48 43-94 44-92 (107)
479 cd05213 NAD_bind_Glutamyl_tRNA 53.4 71 0.0015 29.5 8.1 122 201-342 177-302 (311)
480 PF03297 Ribosomal_S25: S25 ri 53.4 10 0.00022 29.0 1.9 46 45-94 46-92 (105)
481 PRK11524 putative methyltransf 53.4 27 0.00058 31.9 5.1 54 244-297 7-79 (284)
482 PRK13918 CRP/FNR family transc 53.4 12 0.00026 31.8 2.7 34 56-93 148-181 (202)
483 PRK00135 scpB segregation and 53.3 23 0.0005 30.2 4.4 41 43-93 93-133 (188)
484 PRK09880 L-idonate 5-dehydroge 53.0 88 0.0019 29.1 8.8 91 201-299 169-267 (343)
485 PRK11639 zinc uptake transcrip 53.0 15 0.00032 30.7 3.1 54 39-94 25-79 (169)
486 cd08254 hydroxyacyl_CoA_DH 6-h 52.4 1.3E+02 0.0028 27.5 9.8 91 199-299 163-264 (338)
487 COG5379 BtaA S-adenosylmethion 52.1 18 0.0004 32.9 3.6 68 234-301 296-369 (414)
488 TIGR03338 phnR_burk phosphonat 51.6 15 0.00033 31.6 3.2 35 56-94 33-67 (212)
489 PRK13239 alkylmercury lyase; P 51.4 16 0.00035 31.5 3.1 39 41-86 23-61 (206)
490 PF02319 E2F_TDP: E2F/DP famil 51.3 3.7 8E-05 28.9 -0.7 37 56-94 23-62 (71)
491 PRK09391 fixK transcriptional 51.1 13 0.00028 32.7 2.6 33 57-93 179-211 (230)
492 PF13936 HTH_38: Helix-turn-he 50.9 16 0.00035 22.8 2.3 23 57-83 20-42 (44)
493 COG0686 Ald Alanine dehydrogen 50.9 48 0.001 30.7 6.1 92 202-296 168-266 (371)
494 PTZ00357 methyltransferase; Pr 50.7 50 0.0011 34.1 6.7 128 162-290 640-823 (1072)
495 cd05188 MDR Medium chain reduc 50.6 1.6E+02 0.0035 25.5 9.9 92 199-301 132-235 (271)
496 smart00421 HTH_LUXR helix_turn 50.3 21 0.00045 22.9 3.0 25 57-85 18-42 (58)
497 TIGR00675 dcm DNA-methyltransf 50.2 71 0.0015 29.6 7.5 119 205-349 1-137 (315)
498 PF05344 DUF746: Domain of Unk 50.1 19 0.00041 24.7 2.6 26 57-86 13-38 (65)
499 PRK11642 exoribonuclease R; Pr 50.0 18 0.00039 38.3 3.8 48 45-94 24-71 (813)
500 KOG2352 Predicted spermine/spe 49.9 24 0.00052 34.5 4.3 101 201-302 295-420 (482)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=2.1e-44 Score=323.27 Aligned_cols=338 Identities=54% Similarity=0.903 Sum_probs=301.3
Q ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCC-CCCCCcchHHHHHHHHhcccccccc
Q 017777 16 SDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPT-KNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
++.++..+++++++++...+++++|+||||||.|.+.+ + ..|||..+.. ++|.++.+++|+||.|++.++++..
T Consensus 2 ~e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~---~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~ 76 (342)
T KOG3178|consen 2 EENEASLRAMRLANGFALPMVLKAACELGVFDILANAG---S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCR 76 (342)
T ss_pred chhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC---C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceee
Confidence 34566678999999999999999999999999999953 3 8899999885 5777999999999999999999974
Q ss_pred cccCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHH
Q 017777 95 LRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFN 174 (366)
Q Consensus 95 ~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 174 (366)
. ..+ + .|.+++.++.++++.+..++..++...+....++.|.++.++++.+..++..++|..+++|...+....
T Consensus 77 ~---~~~--~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~ 150 (342)
T KOG3178|consen 77 L---VGG--E-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFS 150 (342)
T ss_pred e---ecc--e-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccH
Confidence 1 111 3 899999999888666666888888888888899999999999999999999999988899999888888
Q ss_pred HHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-CCceEEEccC
Q 017777 175 KIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-PGVEHVGGDM 253 (366)
Q Consensus 175 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~~v~~~~~D~ 253 (366)
..++++|........+.+++.+.++++....||||+|.|..+..++..+|+++++.+|+|.+++.+... ++|+.+.+|+
T Consensus 151 ~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdm 230 (342)
T KOG3178|consen 151 KDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDM 230 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccc
Confidence 999999999998888889998887888999999999999999999999999999999999999999887 8999999999
Q ss_pred CCCCCCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC-CCCCchhhhhhhhcchhhHhhCCCCccCC
Q 017777 254 FVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV-TPDTSLASKVVIHVDCIMLAHNPGGKERT 332 (366)
Q Consensus 254 ~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 332 (366)
|++.|.+|+|++.++||||+|++++++|++++..|+|||.|++.|.+.++ .............+|+.|+.+..+|++|+
T Consensus 231 fq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert 310 (342)
T KOG3178|consen 231 FQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERT 310 (342)
T ss_pred cccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceecc
Confidence 99999999999999999999999999999999999999999999998775 32222224455678888988877799999
Q ss_pred HHHHHHHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 333 EQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 333 ~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
.+|+..++.++||.+..+.-.+..+++||++|
T Consensus 311 ~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 311 LKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred HHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 99999999999999999999999999999986
No 2
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=3.6e-38 Score=291.85 Aligned_cols=290 Identities=17% Similarity=0.275 Sum_probs=212.5
Q ss_pred HHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 33 LPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 33 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
.+++|++|++|||||.|.+ +|.|++|||+++++ +++.++|||++|+++|+|++. +++|++|+.
T Consensus 3 ~~~~l~aa~~Lglfd~L~~----gp~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~~---------~~~y~~t~~ 65 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE---------DGKWSLTEF 65 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc----CCCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEec---------CCcEecchh
Confidence 4679999999999999988 59999999999999 999999999999999999963 589999999
Q ss_pred chhhhcCCCCC---ChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHHHHHHHhh-hcchhh
Q 017777 113 CKFLTKNEDGV---TLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMS-SHSTIT 188 (366)
Q Consensus 113 ~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~-~~~~~~ 188 (366)
+..++.+.++. ++.++..+. .......|.+|.+++|+ .++|...+ .+....++. ..|...|. ......
T Consensus 66 ~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~-~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~ 137 (306)
T TIGR02716 66 ADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRG-QKNFKGQV-----PYPPVTRED-NLYFEEIHRSNAKFA 137 (306)
T ss_pred HHhhccCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhcC-Cccccccc-----CCCCCCHHH-HHhHHHHHHhcchhH
Confidence 99777655432 122333332 11223578999999984 44443222 221222222 23334443 333334
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceEEEccCCC-CCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGDMFV-SVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~ 260 (366)
.+.+.+.+. +++..+|||||||+|.++..+++++|+++++++|+|.+++.++++ +|++++++|+++ ++|.+
T Consensus 138 ~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~ 216 (306)
T TIGR02716 138 IQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA 216 (306)
T ss_pred HHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCC
Confidence 555666666 778899999999999999999999999999999998888776542 579999999987 66667
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhh-hcchhhHhhCCCCccCCHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVI-HVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
|+|++++++|+|+++.+.++|++++++|+|||+++|.|.+.++.... ....... .....+... -...++.++|.++
T Consensus 217 D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~l 293 (306)
T TIGR02716 217 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENP-NFDYLSHYILGAGMPFS--VLGFKEQARYKEI 293 (306)
T ss_pred CEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc-hhhHHHHHHHHcccccc--cccCCCHHHHHHH
Confidence 99999999999999888999999999999999999999877654321 1111110 011111100 1123457999999
Q ss_pred HHHcCCceeEEE
Q 017777 340 AKAAGFQGFQVV 351 (366)
Q Consensus 340 l~~aGf~~~~~~ 351 (366)
|+++||+.++++
T Consensus 294 l~~aGf~~v~~~ 305 (306)
T TIGR02716 294 LESLGYKDVTMV 305 (306)
T ss_pred HHHcCCCeeEec
Confidence 999999988753
No 3
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=1.2e-38 Score=285.43 Aligned_cols=236 Identities=36% Similarity=0.636 Sum_probs=206.7
Q ss_pred ccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHHHHHHHhhh
Q 017777 104 ERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSS 183 (366)
Q Consensus 104 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 183 (366)
+++|++|+.++.|+.+.+..++..++.+...+.++.+|.+|.+++++|.++|+..+|.++|+++.++++..+.|+.+|..
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 82 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMAE 82 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHHh
Confidence 69999999999999887756788888876788899999999999999999999999988999999999999999999999
Q ss_pred cchhhH-HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCCCCCCCE
Q 017777 184 HSTITM-KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVPKGDA 262 (366)
Q Consensus 184 ~~~~~~-~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~~~D~ 262 (366)
.+.... +.+...++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++.+|+++++|.+|+
T Consensus 83 ~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D~ 161 (241)
T PF00891_consen 83 YSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVADV 161 (241)
T ss_dssp HHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSESE
T ss_pred hhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccccc
Confidence 887776 77788787 9999999999999999999999999999999999999998888789999999999998888999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCC--cEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVN--GKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pg--G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|+++++||+|+++++..+|++++++|+|| |+|+|+|.+.++....+........+|+.|+.++ +|++||.+||++||
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~ll 240 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEALL 240 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHHHH
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHHHh
Confidence 99999999999999999999999999999 9999999999887666543323357899999886 79999999999998
Q ss_pred H
Q 017777 341 K 341 (366)
Q Consensus 341 ~ 341 (366)
+
T Consensus 241 ~ 241 (241)
T PF00891_consen 241 K 241 (241)
T ss_dssp H
T ss_pred C
Confidence 5
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.77 E-value=1.7e-17 Score=145.09 Aligned_cols=163 Identities=21% Similarity=0.265 Sum_probs=122.0
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCCC--C
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPKG--D 261 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D 261 (366)
+..... ..++.+|||||||||..+..+++..+..+++++|. +.|++.+++. ..++|+.+|..+ |+|+. |
T Consensus 43 ~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD 121 (238)
T COG2226 43 LISLLG-IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFD 121 (238)
T ss_pred HHHhhC-CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccC
Confidence 344333 44689999999999999999999999999999998 9999988764 238999999998 99975 9
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcc-hhhH-h-hCC------------
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVD-CIML-A-HNP------------ 326 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~~------------ 326 (366)
+|.+++.|+++++.+ ++|++++|+|||||++++.|...+..+....... ...+. +.-. . ...
T Consensus 122 ~vt~~fglrnv~d~~--~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~-~~~~~~v~P~~g~~~~~~~~~y~yL~eS 198 (238)
T COG2226 122 AVTISFGLRNVTDID--KALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYI-LYYFKYVLPLIGKLVAKDAEAYEYLAES 198 (238)
T ss_pred EEEeeehhhcCCCHH--HHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHH-HHHHHhHhhhhceeeecChHHHHHHHHH
Confidence 999999999998765 7899999999999999999998776533211100 01111 0000 0 000
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEEECCCcee
Q 017777 327 GGKERTEQEFRALAKAAGFQGFQVVSSAFNTY 358 (366)
Q Consensus 327 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 358 (366)
.....+.+++.++++++||+.+.......+..
T Consensus 199 i~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~ 230 (238)
T COG2226 199 IRRFPDQEELKQMIEKAGFEEVRYENLTFGIV 230 (238)
T ss_pred HHhCCCHHHHHHHHHhcCceEEeeEeeeeeeE
Confidence 11234889999999999999988777655443
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.75 E-value=7.3e-17 Score=145.65 Aligned_cols=156 Identities=19% Similarity=0.170 Sum_probs=114.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC---------CCceEEEccCCC-CCCCC--CEEE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF---------PGVEHVGGDMFV-SVPKG--DAIF 264 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-~~~~~--D~i~ 264 (366)
..+..+|||||||+|.++..+++.+ |+.+++++|+ +.|++.+++. ++++++++|+.+ |++++ |+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 5567899999999999999888875 5679999998 8888877532 478999999987 77754 9999
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchh---hHhhCCC-----------Ccc
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCI---MLAHNPG-----------GKE 330 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----------~~~ 330 (366)
+.+++|++++. ..+|++++++|||||++++.|...++.+..... ....+... ....... ...
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f 226 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKSSINEY 226 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHHHHHhc
Confidence 99999999865 478999999999999999999876553211100 00000000 0000000 124
Q ss_pred CCHHHHHHHHHHcCCceeEEEECCCcee
Q 017777 331 RTEQEFRALAKAAGFQGFQVVSSAFNTY 358 (366)
Q Consensus 331 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 358 (366)
++.+++.++++++||+.++.....++..
T Consensus 227 ~s~~el~~ll~~aGF~~~~~~~~~~g~~ 254 (261)
T PLN02233 227 LTGEELEKLALEAGFSSAKHYEISGGLM 254 (261)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEcCCCee
Confidence 6899999999999999999888765544
No 6
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.75 E-value=2.4e-18 Score=153.84 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=116.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhC--CCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCCCCEEEeccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKY--PSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPKGDAIFIKWI 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~D~i~~~~~ 268 (366)
.+..+|||||||+|..+..+++.+ |+.+++++|+ +.+++.+++. .+++++++|+.+ +.+..|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 356799999999999999999874 7899999998 8888877542 468999999987 6666699999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHh-----------------hCCCCccC
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLA-----------------HNPGGKER 331 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 331 (366)
+|++++++...+|++++++|+|||.+++.|.+..++..... . ...+++.. ....-...
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~--~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH--L---LIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHH--H---HHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 99998888889999999999999999999987655422111 0 11111000 00012356
Q ss_pred CHHHHHHHHHHcCCceeEEEECCCceeEEE
Q 017777 332 TEQEFRALAKAAGFQGFQVVSSAFNTYIME 361 (366)
Q Consensus 332 t~~e~~~ll~~aGf~~~~~~~~~~~~~vie 361 (366)
|.+++.++++++||+.++.......+.++.
T Consensus 207 s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~ 236 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVELWFQCFNFGSLV 236 (239)
T ss_pred CHHHHHHHHHHcCCchHHHHHHHHhHhHHh
Confidence 999999999999999776544433333333
No 7
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.74 E-value=4.2e-18 Score=152.74 Aligned_cols=153 Identities=16% Similarity=0.177 Sum_probs=112.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHh--CCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCCCCEEEeccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISK--YPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPKGDAIFIKWI 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~D~i~~~~~ 268 (366)
.+..+|||||||+|..+..+++. .|+.+++++|+ +.+++.+++. .+++++++|+.+ +.+..|+|+++.+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 45689999999999999988884 58999999998 8998887642 379999999887 6666699999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchh-----------h-H-hhCCCCccCCHHH
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCI-----------M-L-AHNPGGKERTEQE 335 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~-----------~-~-~~~~~~~~~t~~e 335 (366)
+|++++++...++++++++|+|||.+++.|.+..++...... ......++. . . .....-...|.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999988777899999999999999999999766544222110 000000000 0 0 0000112348999
Q ss_pred HHHHHHHcCCceeEEEEC
Q 017777 336 FRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 336 ~~~ll~~aGf~~~~~~~~ 353 (366)
..++|++|||+.+..+-.
T Consensus 214 ~~~~L~~aGF~~v~~~~~ 231 (247)
T PRK15451 214 HKARLHKAGFEHSELWFQ 231 (247)
T ss_pred HHHHHHHcCchhHHHHHH
Confidence 999999999997665443
No 8
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.73 E-value=4e-18 Score=150.58 Aligned_cols=156 Identities=21% Similarity=0.304 Sum_probs=80.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCCC--CEEEecc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPKG--DAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D~i~~~~ 267 (366)
..++.+|||+|||+|..+..+++.. |+.+++++|+ +.|++.+++. .+|+++++|..+ |+++. |+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4567899999999999999998875 6789999998 9999888642 589999999988 88865 9999999
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhH--------hhCCC-----------C
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIML--------AHNPG-----------G 328 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-----------~ 328 (366)
.||++++.+ +.|++++|+|||||+++|+|...+..+. .. ..+.+++. ....+ .
T Consensus 125 glrn~~d~~--~~l~E~~RVLkPGG~l~ile~~~p~~~~---~~---~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~ 196 (233)
T PF01209_consen 125 GLRNFPDRE--RALREMYRVLKPGGRLVILEFSKPRNPL---LR---ALYKFYFKYILPLIGRLLSGDREAYRYLPESIR 196 (233)
T ss_dssp -GGG-SSHH--HHHHHHHHHEEEEEEEEEEEEEB-SSHH---HH---HHHHH----------------------------
T ss_pred hHHhhCCHH--HHHHHHHHHcCCCeEEEEeeccCCCCch---hh---ceeeeeecccccccccccccccccccccccccc
Confidence 999998764 6899999999999999999998776411 11 11111110 00000 1
Q ss_pred ccCCHHHHHHHHHHcCCceeEEEECCCce-eEEEE
Q 017777 329 KERTEQEFRALAKAAGFQGFQVVSSAFNT-YIMEF 362 (366)
Q Consensus 329 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-~vie~ 362 (366)
...+.+++.++++++||+.++..+...+. .+..+
T Consensus 197 ~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g 231 (233)
T PF01209_consen 197 RFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVG 231 (233)
T ss_dssp -----------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 22378999999999999999988875443 34433
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.73 E-value=1.4e-16 Score=143.95 Aligned_cols=156 Identities=20% Similarity=0.285 Sum_probs=118.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCCC--
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPKG-- 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~~-- 260 (366)
...++..+. +.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ ..++.++++|+.+ +++..
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 345676676 7788999999999999999888765 679999998 777776654 2579999999887 67643
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|+|++..+++|++.++...+|++++++|||||++++.+......... ... ... ... .......+.+++.++|
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~--~~~---~~~-~~~--~~~~~~~~~~~~~~~l 190 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENW--DEE---FKA-YIK--KRKYTLIPIQEYGDLI 190 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCc--HHH---HHH-HHH--hcCCCCCCHHHHHHHH
Confidence 99999999988886677899999999999999999999866442111 010 000 011 0122345889999999
Q ss_pred HHcCCceeEEEECC
Q 017777 341 KAAGFQGFQVVSSA 354 (366)
Q Consensus 341 ~~aGf~~~~~~~~~ 354 (366)
+++||+.+++....
T Consensus 191 ~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 191 KSCNFQNVVAKDIS 204 (263)
T ss_pred HHCCCCeeeEEeCc
Confidence 99999999987754
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.71 E-value=3e-16 Score=139.61 Aligned_cols=168 Identities=18% Similarity=0.220 Sum_probs=120.6
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC-CCCCC-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV-SVPKG- 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~~~~- 260 (366)
.++..+. .....+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++ .++++++.+|..+ +++..
T Consensus 36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 4455555 5667899999999999999999886 6789999998 777766653 2578999999877 55543
Q ss_pred -CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhh-hhcchhhHh---------------
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVV-IHVDCIMLA--------------- 323 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~-~~~~~~~~~--------------- 323 (366)
|+|++.+++|++++. .++|+++.++|+|||++++.+...+... ...... ..+...+-.
T Consensus 115 fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIP---GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWL 189 (231)
T ss_pred ccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCCh---HHHHHHHHHHcChhHHhhHHhcCCHHHHHHH
Confidence 999999999998765 4789999999999999999887544321 000000 000000000
Q ss_pred hCCCCccCCHHHHHHHHHHcCCceeEEEECC-CceeEEEEEe
Q 017777 324 HNPGGKERTEQEFRALAKAAGFQGFQVVSSA-FNTYIMEFLK 364 (366)
Q Consensus 324 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~k 364 (366)
.......++.+++.++|+++||+++++.... +..+++.++|
T Consensus 190 ~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 190 QESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0001123578999999999999999988886 6667777765
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.70 E-value=7.8e-16 Score=138.90 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=109.1
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCC--CCCEEEec
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVP--KGDAIFIK 266 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~--~~D~i~~~ 266 (366)
..++..++ .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++++++|+.+..+ ..|+|+++
T Consensus 19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEEe
Confidence 45666666 66779999999999999999999999999999998 888888865 478999999875323 23999999
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHh-----hCCCCccCCHHHHHHHHH
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLA-----HNPGGKERTEQEFRALAK 341 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~t~~e~~~ll~ 341 (366)
.++|++++. ..++++++++|||||++++................. .....+... ...+....+.+++.++|+
T Consensus 97 ~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 97 AALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRAL-ARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred hhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHH-hccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 999998865 478999999999999999864321111000000000 000000000 001223468999999999
Q ss_pred HcCCcee
Q 017777 342 AAGFQGF 348 (366)
Q Consensus 342 ~aGf~~~ 348 (366)
++||++.
T Consensus 174 ~aGf~v~ 180 (255)
T PRK14103 174 DAGCKVD 180 (255)
T ss_pred hCCCeEE
Confidence 9999854
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.68 E-value=1.2e-15 Score=143.03 Aligned_cols=151 Identities=21% Similarity=0.219 Sum_probs=108.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCCC--CEEEeccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPKG--DAIFIKWI 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~--D~i~~~~~ 268 (366)
....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456899999999999999999987 679999998 7777665431 479999999987 66644 99999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCC--chhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDT--SLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
+||+++. ..++++++++|||||+++|.+......... .........++-...... .-...+.++|.++++++||.
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHCCCC
Confidence 9999875 478999999999999999988654321111 000011111111111100 11234799999999999999
Q ss_pred eeEEEECC
Q 017777 347 GFQVVSSA 354 (366)
Q Consensus 347 ~~~~~~~~ 354 (366)
.+++....
T Consensus 273 ~v~~~d~s 280 (340)
T PLN02244 273 DIKTEDWS 280 (340)
T ss_pred eeEeeeCc
Confidence 99887654
No 13
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.68 E-value=1.7e-15 Score=140.15 Aligned_cols=139 Identities=24% Similarity=0.314 Sum_probs=108.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CCceEEEccCCC-CCCCC--CEEEeccccccCC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PGVEHVGGDMFV-SVPKG--DAIFIKWICHDWS 273 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~ 273 (366)
...+|||||||+|.++..+++.++..+++++|. +.+++.+++. .+++++.+|+.+ +++.. |+|++++++|+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 467999999999999999999888889999998 7888777653 578999999887 66543 9999999999998
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 274 DEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 274 ~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
+.+ .+|++++++|+|||++++.+...+... ... ...+.++ ...+.+|+.++|+++||+.+++...
T Consensus 193 d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~~----~~r--~~~~~~~-------~~~t~eEl~~lL~~aGF~~V~i~~i 257 (340)
T PLN02490 193 DPQ--RGIKEAYRVLKIGGKACLIGPVHPTFW----LSR--FFADVWM-------LFPKEEEYIEWFTKAGFKDVKLKRI 257 (340)
T ss_pred CHH--HHHHHHHHhcCCCcEEEEEEecCcchh----HHH--Hhhhhhc-------cCCCHHHHHHHHHHCCCeEEEEEEc
Confidence 775 689999999999999999876543210 000 0111111 1257899999999999999988776
Q ss_pred C
Q 017777 354 A 354 (366)
Q Consensus 354 ~ 354 (366)
.
T Consensus 258 ~ 258 (340)
T PLN02490 258 G 258 (340)
T ss_pred C
Confidence 4
No 14
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.64 E-value=1.1e-14 Score=129.93 Aligned_cols=168 Identities=19% Similarity=0.183 Sum_probs=120.6
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK- 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~- 259 (366)
.++..+. ..+..+|||||||+|.++..++..+| +.+++++|+ +.+++.+++. .++.++.+|+.+ +.+.
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 4455454 44568999999999999999999987 689999998 6666665442 468899999877 4443
Q ss_pred -CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhc--ch---hhHhhCCC------
Q 017777 260 -GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHV--DC---IMLAHNPG------ 327 (366)
Q Consensus 260 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~------ 327 (366)
.|+|++.+++|++++. ..+|+++.++|+|||++++.+...+..... ....... .. ...... +
T Consensus 121 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 194 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTNPPL---KKAYDFYLFKVLPLIGKLIS-KNAEAYS 194 (239)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCchHH---HHHHHHHHHhhhHHHHHHHc-CCcHHHH
Confidence 3999999999998765 478999999999999999998765543110 0000000 00 000000 1
Q ss_pred ------CccCCHHHHHHHHHHcCCceeEEEECC-CceeEEEEEec
Q 017777 328 ------GKERTEQEFRALAKAAGFQGFQVVSSA-FNTYIMEFLKS 365 (366)
Q Consensus 328 ------~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~k~ 365 (366)
...++.++|.++|+++||+.+++.... +...++.++|.
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 195 YLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 123578999999999999999988864 67788888874
No 15
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.64 E-value=5.7e-15 Score=126.90 Aligned_cols=151 Identities=22% Similarity=0.237 Sum_probs=113.2
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC------CeEEEecc-hhHHhhCCCC---------CCceEEEccCCC
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS------IKGINFDL-PHVIQDAPAF---------PGVEHVGGDMFV 255 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~ 255 (366)
++..+. .....++|||+||||..+..+++..+. .++++.|+ |++++.+++. .++.++++|..+
T Consensus 92 ~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 92 FVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred hhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 344444 445689999999999999999999877 78999998 9998876542 359999999998
Q ss_pred -CCCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhh--hhcch-----------
Q 017777 256 -SVPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVV--IHVDC----------- 319 (366)
Q Consensus 256 -~~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~--~~~~~----------- 319 (366)
|+|.+ |.+++.+-+.++++.+ +.|++++|+|||||++.+.|+..-+.+. ..++. .+++.
T Consensus 171 LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKpGGrf~cLeFskv~~~~---l~~fy~~ysf~VlpvlG~~iagd 245 (296)
T KOG1540|consen 171 LPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKPGGRFSCLEFSKVENEP---LKWFYDQYSFDVLPVLGEIIAGD 245 (296)
T ss_pred CCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCCCcEEEEEEccccccHH---HHHHHHhhhhhhhchhhHhhhhh
Confidence 99875 9999999999999876 7799999999999999999986544211 11111 11111
Q ss_pred ----hhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 320 ----IMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 320 ----~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
..+... =.+-.+.+++..+.++|||+.+.
T Consensus 246 ~~sYqYLveS-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 246 RKSYQYLVES-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhhHHhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence 001100 11334889999999999999887
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.63 E-value=6e-15 Score=145.01 Aligned_cols=151 Identities=20% Similarity=0.280 Sum_probs=114.9
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC--
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG-- 260 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-- 260 (366)
+.+++.+. +.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++. .+++++.+|+.. ++|..
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 44666665 6667899999999999999888876 679999998 7777766432 478999999987 66643
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|+|++..+++|+++.. .+|++++++|+|||++++.+........... ..... . ..+...++.+++.+++
T Consensus 334 D~I~s~~~l~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~------~~~~~-~--~~g~~~~~~~~~~~~l 402 (475)
T PLN02336 334 DVIYSRDTILHIQDKP--ALFRSFFKWLKPGGKVLISDYCRSPGTPSPE------FAEYI-K--QRGYDLHDVQAYGQML 402 (475)
T ss_pred EEEEECCcccccCCHH--HHHHHHHHHcCCCeEEEEEEeccCCCCCcHH------HHHHH-H--hcCCCCCCHHHHHHHH
Confidence 9999999999988754 7899999999999999999876543221111 11111 1 1234567899999999
Q ss_pred HHcCCceeEEEEC
Q 017777 341 KAAGFQGFQVVSS 353 (366)
Q Consensus 341 ~~aGf~~~~~~~~ 353 (366)
+++||+++.+...
T Consensus 403 ~~aGF~~i~~~d~ 415 (475)
T PLN02336 403 KDAGFDDVIAEDR 415 (475)
T ss_pred HHCCCeeeeeecc
Confidence 9999999877654
No 17
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=5.1e-15 Score=131.82 Aligned_cols=157 Identities=22% Similarity=0.199 Sum_probs=126.6
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~ 260 (366)
.+.+.+.+. +.++.+|||||||.|.++..+++.+ +++++++++ ++..+.+++. .++++...|+.+..+..
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 556778887 9999999999999999999999998 889999998 6666655541 47999999987633346
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|-|++..+++|+..+....+++++++.|+|||++++.....+..+.. ...++...-.+|+|..++.+++.+..
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i~~~~ 211 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEILELA 211 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHHHHHH
Confidence 99999999999999888999999999999999999999877664321 11112222224899999999999999
Q ss_pred HHcCCceeEEEECC
Q 017777 341 KAAGFQGFQVVSSA 354 (366)
Q Consensus 341 ~~aGf~~~~~~~~~ 354 (366)
+++||++......+
T Consensus 212 ~~~~~~v~~~~~~~ 225 (283)
T COG2230 212 SEAGFVVLDVESLR 225 (283)
T ss_pred HhcCcEEehHhhhc
Confidence 99999988766543
No 18
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.61 E-value=1.7e-14 Score=132.38 Aligned_cols=154 Identities=13% Similarity=0.109 Sum_probs=106.4
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhC-------CCCCCceEEEccCCC-CCC-C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDA-------PAFPGVEHVGGDMFV-SVP-K 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~~~~v~~~~~D~~~-~~~-~ 259 (366)
..++..+. ...+.+|||||||+|.++..++...+. .++++|. +.++..+ ....++.+...++.+ +.. .
T Consensus 111 ~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 111 DRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 34555554 344689999999999999999887654 7899997 5554332 123578888888765 333 3
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
.|+|++..+|||+++. ..+|++++++|+|||.|++.+...+.+......+. .....|. ..-..++..++.++
T Consensus 189 FD~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~---~ry~k~~---nv~flpS~~~L~~~ 260 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK---DRYAKMK---NVYFIPSVSALKNW 260 (314)
T ss_pred cCEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCch---HHHHhcc---ccccCCCHHHHHHH
Confidence 4999999999998766 47899999999999999998766543321110000 0000010 01123589999999
Q ss_pred HHHcCCceeEEEEC
Q 017777 340 AKAAGFQGFQVVSS 353 (366)
Q Consensus 340 l~~aGf~~~~~~~~ 353 (366)
|+++||+.+++...
T Consensus 261 L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 261 LEKVGFENFRILDV 274 (314)
T ss_pred HHHCCCeEEEEEec
Confidence 99999999987764
No 19
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.61 E-value=5.9e-15 Score=123.37 Aligned_cols=137 Identities=19% Similarity=0.190 Sum_probs=96.2
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCC--CCEEEeccccccCCh
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPK--GDAIFIKWICHDWSD 274 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~--~D~i~~~~~lh~~~~ 274 (366)
.....+|||||||.|.++..+.+... +++++|+ +.+++. ..+.....+... +.+. .|+|+++++|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 35678999999999999999966533 8999998 777766 233333332223 2332 399999999999986
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
...+|+++++.|||||++++.++..... ...... ........ ......++.++|.++++++||++++
T Consensus 94 --~~~~l~~l~~~LkpgG~l~~~~~~~~~~----~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 --PEEFLKELSRLLKPGGYLVISDPNRDDP----SPRSFL-KWRYDRPY-GGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp --HHHHHHHHHHCEEEEEEEEEEEEBTTSH----HHHHHH-HCCGTCHH-TTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEEcCCcch----hhhHHH-hcCCcCcc-CceeccCCHHHHHHHHHHCCCEEEE
Confidence 4589999999999999999999865431 000011 11111110 0134567999999999999999875
No 20
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.61 E-value=4.2e-15 Score=134.25 Aligned_cols=161 Identities=18% Similarity=0.126 Sum_probs=110.0
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCCCCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFVSVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~~~~ 260 (366)
++.+++.+. +.++.+|||||||.|.++..+++++ +++++++.+ ++..+.+++ .+++++...|+.+-.+..
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 456777776 8889999999999999999999998 789999987 555544432 257999999987522355
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|.|++..++.|++.+....+++++.++|+|||++++........... .......++...-.+|+|..++.+++...+
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~---~~~~~~~~~i~kyiFPgg~lps~~~~~~~~ 205 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYH---AERRSSSDFIRKYIFPGGYLPSLSEILRAA 205 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHH---HCTTCCCHHHHHHTSTTS---BHHHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccch---hhcCCCceEEEEeeCCCCCCCCHHHHHHHH
Confidence 99999999999998888899999999999999999987766543110 000000122222224789999999999999
Q ss_pred HHcCCceeEEEECC
Q 017777 341 KAAGFQGFQVVSSA 354 (366)
Q Consensus 341 ~~aGf~~~~~~~~~ 354 (366)
+++||++..+...+
T Consensus 206 ~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 206 EDAGLEVEDVENLG 219 (273)
T ss_dssp HHTT-EEEEEEE-H
T ss_pred hcCCEEEEEEEEcC
Confidence 99999998887653
No 21
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.61 E-value=7.4e-15 Score=129.97 Aligned_cols=136 Identities=17% Similarity=0.225 Sum_probs=105.5
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC-CCCC-CCEEEeccccccC
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV-SVPK-GDAIFIKWICHDW 272 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~~~-~D~i~~~~~lh~~ 272 (366)
.+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++++++..|+.+ +.+. .|+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999998 767666553 2578999999866 4544 3999999999998
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
++. ..+|++++++|+|||++++.+...+..... . .. .......+.++|.++++++||++++...
T Consensus 81 ~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~-------~~------~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KDK--MDLFSNISRHLKDGGHLVLADFIANLLSAI-E-------HE------ETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCH--HHHHHHHHHHcCCCCEEEEEEcccccCccc-c-------cc------ccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 764 589999999999999999998754321000 0 00 0012245789999999999999998877
Q ss_pred CC
Q 017777 353 SA 354 (366)
Q Consensus 353 ~~ 354 (366)
..
T Consensus 145 ~~ 146 (224)
T smart00828 145 AS 146 (224)
T ss_pred Cc
Confidence 64
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.61 E-value=1.4e-14 Score=125.41 Aligned_cols=141 Identities=14% Similarity=0.122 Sum_probs=105.0
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCC-C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPK-G 260 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~-~ 260 (366)
+.+++.++ .....+|||+|||+|..+..++++ +.+++++|+ +.+++.+++. .++++...|+.+ +++. .
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 34555555 445689999999999999999985 568999998 7777766532 458888899876 4444 3
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|+|++..++|++++++...++++++++|+|||++++.+....++.... .. -...++.+|+.+++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~--------~~--------~~~~~~~~el~~~~ 160 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT--------VG--------FPFAFKEGELRRYY 160 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC--------CC--------CCCccCHHHHHHHh
Confidence 999999999998888888999999999999999877765443321000 00 01225788999999
Q ss_pred HHcCCceeEEE
Q 017777 341 KAAGFQGFQVV 351 (366)
Q Consensus 341 ~~aGf~~~~~~ 351 (366)
+ ||+++...
T Consensus 161 ~--~~~~~~~~ 169 (197)
T PRK11207 161 E--GWEMVKYN 169 (197)
T ss_pred C--CCeEEEee
Confidence 7 89987763
No 23
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.61 E-value=1.4e-14 Score=134.51 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=106.8
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhC-------CCCCCceEEEccCCC-CCCCC-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDA-------PAFPGVEHVGGDMFV-SVPKG- 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~~~~v~~~~~D~~~-~~~~~- 260 (366)
.+...++ .-.+.+|||||||+|.++..++...+. .++++|. +.++..+ ....+++++.+|+.+ +.+..
T Consensus 113 ~l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 113 RVLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 3444454 234589999999999999999998765 5999997 4444321 113579999999876 55443
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|+|++..++||..+. ..+|+++++.|+|||.+++.+...+.+......+.. . + ..| ...-..+|.+++.++|
T Consensus 191 D~V~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~-~-y-~~~---~~~~~lps~~~l~~~L 262 (322)
T PRK15068 191 DTVFSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGD-R-Y-AKM---RNVYFIPSVPALKNWL 262 (322)
T ss_pred CEEEECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchh-H-H-hcC---ccceeCCCHHHHHHHH
Confidence 999999999998765 478999999999999999876655443221110000 0 0 000 0011246899999999
Q ss_pred HHcCCceeEEEEC
Q 017777 341 KAAGFQGFQVVSS 353 (366)
Q Consensus 341 ~~aGf~~~~~~~~ 353 (366)
+++||+.+++...
T Consensus 263 ~~aGF~~i~~~~~ 275 (322)
T PRK15068 263 ERAGFKDVRIVDV 275 (322)
T ss_pred HHcCCceEEEEeC
Confidence 9999999988765
No 24
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.60 E-value=3.5e-15 Score=137.61 Aligned_cols=144 Identities=15% Similarity=0.087 Sum_probs=103.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC--CCEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK--GDAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~--~D~i~~~~~l 269 (366)
...+|||||||+|.++..+++ ++.+++++|. +++++.++++ .+++++++|+.+ +.+. .|+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 456999999999999998886 5678999998 8888877632 378899999766 4443 3999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC----CccCCHHHHHHHHHHcCC
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG----GKERTEQEFRALAKAAGF 345 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~t~~e~~~ll~~aGf 345 (366)
||+++.+ .+|++++++|||||.+++.+...... ....... ...........+ .+.++.+|+.++|+++||
T Consensus 209 eHv~d~~--~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i~-~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf 282 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIPNGATVLSTINRTMR---AYASTIV-GAEYILRWLPKGTHQWSSFVTPEELSMILQRASV 282 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhhh-hHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCC
Confidence 9998765 78999999999999999987532210 0000000 000001000011 235799999999999999
Q ss_pred ceeEEEE
Q 017777 346 QGFQVVS 352 (366)
Q Consensus 346 ~~~~~~~ 352 (366)
+++++.-
T Consensus 283 ~i~~~~G 289 (322)
T PLN02396 283 DVKEMAG 289 (322)
T ss_pred eEEEEee
Confidence 9988743
No 25
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.59 E-value=5.7e-14 Score=124.00 Aligned_cols=165 Identities=19% Similarity=0.176 Sum_probs=117.5
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCC--CC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPK--GD 261 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~--~D 261 (366)
.++..+. ..+..+|||+|||+|..+..+++.+|. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++. .|
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 3444444 446789999999999999999999986 78999998 677666543 2578999999887 5543 39
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC----------CC----
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN----------PG---- 327 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~---- 327 (366)
+|++++++|++++. ..+|+++++.|+|||++++.+...+..... ....+..+..+. .+
T Consensus 109 ~i~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (223)
T TIGR01934 109 AVTIAFGLRNVTDI--QKALREMYRVLKPGGRLVILEFSKPANALL------KKFYKFYLKNVLPSIGGLISKNAEAYTY 180 (223)
T ss_pred EEEEeeeeCCcccH--HHHHHHHHHHcCCCcEEEEEEecCCCchhh------HHHHHHHHHHhhhhhhhhhcCCchhhHH
Confidence 99999999987764 578999999999999999988765432110 001111110000 00
Q ss_pred -----CccCCHHHHHHHHHHcCCceeEEEECCCce-eEEEEEe
Q 017777 328 -----GKERTEQEFRALAKAAGFQGFQVVSSAFNT-YIMEFLK 364 (366)
Q Consensus 328 -----~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-~vie~~k 364 (366)
....+.++|.++|+++||+.+.+.+...+. .+++++|
T Consensus 181 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 181 LPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 123478899999999999999988887664 4555543
No 26
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.57 E-value=1.5e-13 Score=124.28 Aligned_cols=153 Identities=17% Similarity=0.209 Sum_probs=107.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCCCCC--CCCEEE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFVSVP--KGDAIF 264 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~~--~~D~i~ 264 (366)
...++..++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. +++.++.+|+.+..+ ..|+|+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 445666666 66788999999999999999999999999999998 8888888754 679999999876222 339999
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhh--hhhcchhhHhhC-C---CCccCCHHHHHH
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKV--VIHVDCIMLAHN-P---GGKERTEQEFRA 338 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~---~~~~~t~~e~~~ 338 (366)
++.++|++++. ..+|++++++|+|||.+++.-. +....+..... .....-+..... . .....+..++.+
T Consensus 99 ~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~~~---~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 173 (258)
T PRK01683 99 ANASLQWLPDH--LELFPRLVSLLAPGGVLAVQMP---DNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYD 173 (258)
T ss_pred EccChhhCCCH--HHHHHHHHHhcCCCcEEEEECC---CCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHH
Confidence 99999998765 4789999999999999988632 11110000000 000000010000 0 123457889999
Q ss_pred HHHHcCCce
Q 017777 339 LAKAAGFQG 347 (366)
Q Consensus 339 ll~~aGf~~ 347 (366)
++.++|+.+
T Consensus 174 ~l~~~g~~v 182 (258)
T PRK01683 174 ALAPAACRV 182 (258)
T ss_pred HHHhCCCce
Confidence 999999874
No 27
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.57 E-value=4.9e-15 Score=116.24 Aligned_cols=97 Identities=19% Similarity=0.284 Sum_probs=81.3
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccC-CC-CCCC-CCEEEecc-cc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDM-FV-SVPK-GDAIFIKW-IC 269 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~-~~-~~~~-~D~i~~~~-~l 269 (366)
+.+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++ .++++++++|+ .. +.++ .|+|++.. .+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 57899999999999999999999999999998 888876654 27999999999 33 3333 49999999 66
Q ss_pred ccCCh-HHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 270 HDWSD-EHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 270 h~~~~-~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
|++.+ ++...+|+++++.|+|||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 64443 577899999999999999999865
No 28
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.56 E-value=7.7e-14 Score=127.17 Aligned_cols=145 Identities=21% Similarity=0.327 Sum_probs=108.0
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCCC--CEEEecc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPKG--DAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D~i~~~~ 267 (366)
+....+|||||||+|..+..+++.. +..+++++|. +.+++.+++. ++++++.+|+.+ +++.+ |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 5567899999999999888777654 5668999998 8888877642 588999999877 66543 9999999
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCce
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQG 347 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 347 (366)
++|++++. ..+++++.++|||||++++.+....... . ... ..+..+.. ...+...+.++|.++|+++||..
T Consensus 155 v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~---~~~--~~~~~~~~-~~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGEL-P---EEI--RNDAELYA-GCVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCC-C---HHH--HHhHHHHh-ccccCCCCHHHHHHHHHHCCCCc
Confidence 99988765 4789999999999999999987654321 1 011 11122221 11344568899999999999998
Q ss_pred eEEEE
Q 017777 348 FQVVS 352 (366)
Q Consensus 348 ~~~~~ 352 (366)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87644
No 29
>PRK08317 hypothetical protein; Provisional
Probab=99.56 E-value=1.1e-13 Score=123.34 Aligned_cols=156 Identities=19% Similarity=0.183 Sum_probs=109.4
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCC-----CCCceEEEccCCC-CCCC--C
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPA-----FPGVEHVGGDMFV-SVPK--G 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~-~~~~--~ 260 (366)
.+.+.+. +.+..+|||+|||+|.++..++..+ |..+++++|+ +.+++.+++ ..++++...|+.. +++. .
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 3455555 6678899999999999999999988 7889999998 666665543 2578899999876 5543 3
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCc-hhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTS-LASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
|+|++.+++|++++. ..++++++++|+|||++++.+.......... ...........+.. ......+..+|.++
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 163 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD---HFADPWLGRRLPGL 163 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh---cCCCCcHHHHHHHH
Confidence 999999999998875 4789999999999999999885322110000 00011111111111 12233456789999
Q ss_pred HHHcCCceeEEEE
Q 017777 340 AKAAGFQGFQVVS 352 (366)
Q Consensus 340 l~~aGf~~~~~~~ 352 (366)
|+++||+.+++..
T Consensus 164 l~~aGf~~~~~~~ 176 (241)
T PRK08317 164 FREAGLTDIEVEP 176 (241)
T ss_pred HHHcCCCceeEEE
Confidence 9999999876544
No 30
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.55 E-value=4.3e-14 Score=127.56 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=105.6
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--CCCC-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--SVPK- 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~~~- 259 (366)
.++..++ .++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++++|+.+ +.+.
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 4555543 45679999999999999999985 568999998 8888877642 468899998865 3332
Q ss_pred -CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCch-hhhhhhh-cchhh---HhhCCCCccCCH
Q 017777 260 -GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSL-ASKVVIH-VDCIM---LAHNPGGKERTE 333 (366)
Q Consensus 260 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~-~~~~~~~-~~~~~---~~~~~~~~~~t~ 333 (366)
.|+|++..++|+++++. .+|+++.++|||||++++............. ....... ..+.. .... -....+.
T Consensus 112 ~fD~V~~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~ 188 (255)
T PRK11036 112 PVDLILFHAVLEWVADPK--SVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLS-PDYPLDP 188 (255)
T ss_pred CCCEEEehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCC-CCCCCCH
Confidence 39999999999987664 7899999999999999987543211000000 0000000 00000 0000 1123578
Q ss_pred HHHHHHHHHcCCceeEEEECC
Q 017777 334 QEFRALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 334 ~e~~~ll~~aGf~~~~~~~~~ 354 (366)
+++.++|+++||+++...-+.
T Consensus 189 ~~l~~~l~~aGf~~~~~~gi~ 209 (255)
T PRK11036 189 EQVYQWLEEAGWQIMGKTGVR 209 (255)
T ss_pred HHHHHHHHHCCCeEeeeeeEE
Confidence 999999999999988665543
No 31
>PRK06922 hypothetical protein; Provisional
Probab=99.54 E-value=4.5e-14 Score=138.38 Aligned_cols=141 Identities=24% Similarity=0.310 Sum_probs=104.8
Q ss_pred CchhhcccCchHHHHHHHHhhhcchh--hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHh
Q 017777 162 NAFDYHGKDLRFNKIFNNGMSSHSTI--TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQ 238 (366)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~m~~~~~~--~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~ 238 (366)
.+|+++..+++....|...|...... ........++ +.++.+|||||||+|..+..+++.+|+.+++++|+ +.+++
T Consensus 378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe 456 (677)
T PRK06922 378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVID 456 (677)
T ss_pred HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 56777777777777676555432111 1111122233 55678999999999999999999999999999998 77787
Q ss_pred hCCCC-----CCceEEEccCCC-C--CCCC--CEEEeccccccC-----------ChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 239 DAPAF-----PGVEHVGGDMFV-S--VPKG--DAIFIKWICHDW-----------SDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 239 ~a~~~-----~~v~~~~~D~~~-~--~~~~--D~i~~~~~lh~~-----------~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
.+++. .+++++++|..+ + +++. |+|+++.++|+| ++++..++|++++++|||||++++.
T Consensus 457 ~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 457 TLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 76542 457888899876 3 4433 999999999976 2456789999999999999999999
Q ss_pred ccccCC
Q 017777 298 ESILPV 303 (366)
Q Consensus 298 e~~~~~ 303 (366)
|...++
T Consensus 537 D~v~~E 542 (677)
T PRK06922 537 DGIMTE 542 (677)
T ss_pred eCccCC
Confidence 876544
No 32
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.54 E-value=8.3e-14 Score=116.92 Aligned_cols=184 Identities=15% Similarity=0.166 Sum_probs=127.6
Q ss_pred HHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCC
Q 017777 177 FNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMF 254 (366)
Q Consensus 177 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~ 254 (366)
|.++-...+++.. .++..++ .....+|+|+|||+|..+..|++++|+..++++|. ++|++.|+.. ++++|..+|+.
T Consensus 8 Yl~F~~eRtRPa~-dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~ 85 (257)
T COG4106 8 YLQFEDERTRPAR-DLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLR 85 (257)
T ss_pred HHHHHHhccCcHH-HHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHh
Confidence 4444445555443 5666777 78889999999999999999999999999999997 9999888654 89999999998
Q ss_pred CCCC--CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC---CCCc
Q 017777 255 VSVP--KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN---PGGK 329 (366)
Q Consensus 255 ~~~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 329 (366)
+-.| +.|+++.+-+||.++|. ..+|.++-..|.|||.|.+.=+-.-+.+............-+...... ....
T Consensus 86 ~w~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~ 163 (257)
T COG4106 86 TWKPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAP 163 (257)
T ss_pred hcCCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCC
Confidence 7333 45999999999998875 588999999999999999864422222111111100000011111100 0234
Q ss_pred cCCHHHHHHHHHHcCCceeEEEE------CCCceeEEEEEec
Q 017777 330 ERTEQEFRALAKAAGFQGFQVVS------SAFNTYIMEFLKS 365 (366)
Q Consensus 330 ~~t~~e~~~ll~~aGf~~~~~~~------~~~~~~vie~~k~ 365 (366)
..+...|-++|...+=++ .++. +.+...|+|..|.
T Consensus 164 v~s~a~Yy~lLa~~~~rv-DiW~T~Y~h~l~~a~aIvdWvkg 204 (257)
T COG4106 164 LPSPAAYYELLAPLACRV-DIWHTTYYHQLPGADAIVDWVKG 204 (257)
T ss_pred CCCHHHHHHHhCccccee-eeeeeeccccCCCccchhhheec
Confidence 568899999999887543 3332 3466677777764
No 33
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.53 E-value=1.7e-13 Score=118.36 Aligned_cols=140 Identities=14% Similarity=0.110 Sum_probs=101.4
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCC-CCE
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPK-GDA 262 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~-~D~ 262 (366)
.+.+.+. ...+.+|||+|||+|..+..++++ +.+++++|+ +.+++.+++. -++++...|+.. +.+. .|+
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence 3444444 445689999999999999999984 568999998 7777765432 236677777754 4443 499
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHH
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKA 342 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 342 (366)
|+++.++|+++.++...++++++++|+|||++++++....+.... .. +.....+.+|+.++|+
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~--------~~--------~~~~~~~~~el~~~f~- 160 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC--------HM--------PFSFTFKEDELRQYYA- 160 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC--------CC--------CcCccCCHHHHHHHhC-
Confidence 999999999988788899999999999999988876543322100 00 0122367899999997
Q ss_pred cCCceeEEE
Q 017777 343 AGFQGFQVV 351 (366)
Q Consensus 343 aGf~~~~~~ 351 (366)
+|+++...
T Consensus 161 -~~~~~~~~ 168 (195)
T TIGR00477 161 -DWELLKYN 168 (195)
T ss_pred -CCeEEEee
Confidence 58877665
No 34
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.53 E-value=9.4e-15 Score=121.28 Aligned_cols=136 Identities=22% Similarity=0.300 Sum_probs=98.8
Q ss_pred CCCeEEEEeCCccHHHHHHH-HhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC-C--CC-CCCEEEeccc
Q 017777 201 GLNSVVDVGGGIGATLNMII-SKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV-S--VP-KGDAIFIKWI 268 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~--~~-~~D~i~~~~~ 268 (366)
+..+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.+++ .++++|.++|+.+ + ++ ..|+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 56899999999999999999 5578899999998 888888765 2689999999998 5 33 3499999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcch--hhHhhCCCCccCCHHHHHHHHHHcC
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDC--IMLAHNPGGKERTEQEFRALAKAAG 344 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~t~~e~~~ll~~aG 344 (366)
+|++++.+ .+|+++.++|+|+|.+++.+......-. ........+ ........+. ..++|..+|++||
T Consensus 83 l~~~~~~~--~~l~~~~~~lk~~G~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 83 LHHFPDPE--KVLKNIIRLLKPGGILIISDPNHNDELP----EQLEELMNLYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp GGGTSHHH--HHHHHHHHHEEEEEEEEEEEEEHSHHHH----HHHHHHHHHHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred hhhccCHH--HHHHHHHHHcCCCcEEEEEECChHHHHH----HHHHHHHHHHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 99988764 7899999999999999998876221100 000111111 1111111111 6789999999998
No 35
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.50 E-value=6e-13 Score=120.20 Aligned_cols=101 Identities=20% Similarity=0.238 Sum_probs=82.1
Q ss_pred CCCCCeEEEEeCCccH----HHHHHHHhCC-----CCeEEEecc-hhHHhhCCCC-------------------------
Q 017777 199 FEGLNSVVDVGGGIGA----TLNMIISKYP-----SIKGINFDL-PHVIQDAPAF------------------------- 243 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~------------------------- 243 (366)
..+..+|+|+|||+|. ++..+.+..+ +.++++.|+ +.+++.|++.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456899999999997 4555555554 578999998 8888877652
Q ss_pred --------CCceEEEccCCC-CCCC--CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 244 --------PGVEHVGGDMFV-SVPK--GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 244 --------~~v~~~~~D~~~-~~~~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+|+|..+|+.+ +.+. .|+|++.++||+++++...+++++++++|+|||+|++-..
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 268999999988 4433 3999999999999988888999999999999999999553
No 36
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.50 E-value=3.7e-14 Score=107.40 Aligned_cols=88 Identities=22% Similarity=0.388 Sum_probs=74.4
Q ss_pred EEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CCceEEEccCCC-CCCCC--CEEEeccccccCChHHHH
Q 017777 206 VDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEHCV 278 (366)
Q Consensus 206 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~~~ 278 (366)
||+|||+|..+..+.+. +..+++++|. +.+++.+++. .++.+..+|+.+ ++++. |+|++.+++|++ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 89999999999999998 8889999998 7777766542 567799999988 77755 999999999998 4456
Q ss_pred HHHHHHHHhCCCCcEEEE
Q 017777 279 KFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 279 ~~L~~~~~~L~pgG~lli 296 (366)
.++++++|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 899999999999999986
No 37
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.50 E-value=1.1e-12 Score=118.11 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=104.4
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCC-CCCCC--CEE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFV-SVPKG--DAI 263 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i 263 (366)
...+++.++ .....+|||+|||+|.++..+.+. +.+++++|+ +.+++.+++. ..+.++++|+.. ++++. |+|
T Consensus 31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 445556555 345689999999999999888763 578999998 8888888754 456788999877 66543 999
Q ss_pred EeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHc
Q 017777 264 FIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAA 343 (366)
Q Consensus 264 ~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 343 (366)
+++.++|+.++. ..+|+++.++|+|||.+++.......-. .........+. ........+.++|.+++...
T Consensus 108 ~s~~~l~~~~d~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---el~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~ 178 (251)
T PRK10258 108 WSNLAVQWCGNL--STALRELYRVVRPGGVVAFTTLVQGSLP---ELHQAWQAVDE----RPHANRFLPPDAIEQALNGW 178 (251)
T ss_pred EECchhhhcCCH--HHHHHHHHHHcCCCeEEEEEeCCCCchH---HHHHHHHHhcc----CCccccCCCHHHHHHHHHhC
Confidence 999999987665 4789999999999999999876543210 00000000000 00123345889999999988
Q ss_pred CCce
Q 017777 344 GFQG 347 (366)
Q Consensus 344 Gf~~ 347 (366)
|++.
T Consensus 179 ~~~~ 182 (251)
T PRK10258 179 RYQH 182 (251)
T ss_pred Ccee
Confidence 8764
No 38
>PRK05785 hypothetical protein; Provisional
Probab=99.49 E-value=1.1e-12 Score=115.97 Aligned_cols=153 Identities=12% Similarity=0.052 Sum_probs=105.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCC--CEEEeccccccCChHH
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEH 276 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~ 276 (366)
...+|||||||+|..+..+++.+ +.+++++|. ++|++.+++. ..++++|+.+ |+++. |+|++.+++|++++.+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~ 127 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIE 127 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCHH
Confidence 36799999999999999999887 568999998 9999988753 3567888877 77654 9999999999988764
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhh-hhcc----hhhHhhCCCC-----------ccCCHHHHHHHH
Q 017777 277 CVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVV-IHVD----CIMLAHNPGG-----------KERTEQEFRALA 340 (366)
Q Consensus 277 ~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~-----------~~~t~~e~~~ll 340 (366)
++|++++++|||. +.+++...++... ..... ..+. ......+... ...+.+++.+++
T Consensus 128 --~~l~e~~RvLkp~--~~ile~~~p~~~~---~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~ 200 (226)
T PRK05785 128 --KVIAEFTRVSRKQ--VGFIAMGKPDNVI---KRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIF 200 (226)
T ss_pred --HHHHHHHHHhcCc--eEEEEeCCCCcHH---HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7899999999993 4455554443211 01000 0000 0111111011 124889999999
Q ss_pred HHcCCceeEEEECCCce-eEEEEEe
Q 017777 341 KAAGFQGFQVVSSAFNT-YIMEFLK 364 (366)
Q Consensus 341 ~~aGf~~~~~~~~~~~~-~vie~~k 364 (366)
+++| ..++......+. .+..++|
T Consensus 201 ~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 201 EKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHh-CceEEEEccccEEEEEEEee
Confidence 9984 768888876544 4555555
No 39
>PRK06202 hypothetical protein; Provisional
Probab=99.49 E-value=1.3e-12 Score=116.12 Aligned_cols=144 Identities=17% Similarity=0.118 Sum_probs=101.0
Q ss_pred CCCCeEEEEeCCccHHHHHHHHh----CCCCeEEEecc-hhHHhhCCCC---CCceEEEccCCC-CCCC--CCEEEeccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISK----YPSIKGINFDL-PHVIQDAPAF---PGVEHVGGDMFV-SVPK--GDAIFIKWI 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~--~D~i~~~~~ 268 (366)
.+..+|||||||+|.++..|++. .++.+++++|+ +.+++.+++. .++++...+... +.+. .|+|+++++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45689999999999998888754 45679999998 8998887654 457776665443 3332 399999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhh-----CCC-----CccCCHHHHHH
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAH-----NPG-----GKERTEQEFRA 338 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~t~~e~~~ 338 (366)
|||+++++...+|++++++++ |.+++.+...+.. . +........... ..+ .+.++.+|+.+
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~--~-----~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ 209 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL--A-----YALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAA 209 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH--H-----HHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHH
Confidence 999998888899999999998 6777766554321 0 000000000000 001 23569999999
Q ss_pred HHHHcCCceeEEEEC
Q 017777 339 LAKAAGFQGFQVVSS 353 (366)
Q Consensus 339 ll~~aGf~~~~~~~~ 353 (366)
++++ ||++...++.
T Consensus 210 ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 210 LAPQ-GWRVERQWPF 223 (232)
T ss_pred HhhC-CCeEEeccce
Confidence 9999 9998777664
No 40
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.48 E-value=8.1e-13 Score=116.49 Aligned_cols=146 Identities=12% Similarity=0.034 Sum_probs=101.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCCCCEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPKGDAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~D~i~~~~~lh~ 271 (366)
....+|||||||+|.++..++.. +.+++++|+ +.+++.+++. .++.+..+|+.+..+..|+|++..++++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 45789999999999999999875 458999998 8888777542 3789999998763344599999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHh--hCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLA--HNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
++.++...+++++.+.+++++.+.+... . .... ....+.-.... ....-..++.+++.++++++||+++.
T Consensus 132 ~~~~~~~~~l~~i~~~~~~~~~i~~~~~----~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 203 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKERVIFTFAPK----T---AWLA-FLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVR 203 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCC----c---hHHH-HHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeee
Confidence 9887778999999999987655554211 1 0000 00010000000 00112345899999999999999988
Q ss_pred EEECCC
Q 017777 350 VVSSAF 355 (366)
Q Consensus 350 ~~~~~~ 355 (366)
......
T Consensus 204 ~~~~~~ 209 (219)
T TIGR02021 204 EGLVST 209 (219)
T ss_pred eecccc
Confidence 776543
No 41
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.46 E-value=1.2e-12 Score=116.78 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=102.0
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--CCceEEEccCCC-CCCCC--CEEEeccccccCCh
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--PGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSD 274 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~ 274 (366)
.+.+|||||||+|.++..+++..|..+++++|+ +.+++.+++. +++.++.+|+.+ +++.. |+|++.+++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 357899999999999999999999999999998 7777665543 578999999887 55433 99999999998766
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
. ..+|++++++|+|||.+++.+...... . ........ ......+.++|.++++++ |+.+...
T Consensus 114 ~--~~~l~~~~~~L~~~G~l~~~~~~~~~~------~---~~~~~~~~---~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 L--SQALSELARVLKPGGLLAFSTFGPGTL------H---ELRQSFGQ---HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred H--HHHHHHHHHHcCCCcEEEEEeCCccCH------H---HHHHHHHH---hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4 478999999999999999986543221 0 00111100 133446789999999998 8765543
No 42
>PRK04266 fibrillarin; Provisional
Probab=99.46 E-value=4.2e-12 Score=111.69 Aligned_cols=145 Identities=16% Similarity=0.116 Sum_probs=99.1
Q ss_pred hccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHh----hCCCCCCceEEEccCCCC-----CCCC-CEE
Q 017777 195 NYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQ----DAPAFPGVEHVGGDMFVS-----VPKG-DAI 263 (366)
Q Consensus 195 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~~v~~~~~D~~~~-----~~~~-D~i 263 (366)
.++ +.+..+|||+|||+|.++..+++..+..+++++|+ +.+++ .+++..++.++.+|...+ .++. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 355 66788999999999999999999887668999998 76555 445457899999998653 1233 888
Q ss_pred EeccccccCChH-HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHH
Q 017777 264 FIKWICHDWSDE-HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKA 342 (366)
Q Consensus 264 ~~~~~lh~~~~~-~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 342 (366)
++ +++++ ....+|+++++.|||||+++|.=...+-+... ... +..++..+++++
T Consensus 146 ~~-----d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~-------------------~~~-~~~~~~~~~l~~ 200 (226)
T PRK04266 146 YQ-----DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK-------------------DPK-EIFKEEIRKLEE 200 (226)
T ss_pred EE-----CCCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcC-------------------CHH-HHHHHHHHHHHH
Confidence 74 33333 33457899999999999999942111111000 000 112344599999
Q ss_pred cCCceeEEEECCCc---eeEEEEEec
Q 017777 343 AGFQGFQVVSSAFN---TYIMEFLKS 365 (366)
Q Consensus 343 aGf~~~~~~~~~~~---~~vie~~k~ 365 (366)
+||+.++....... +..+.++++
T Consensus 201 aGF~~i~~~~l~p~~~~h~~~v~~~~ 226 (226)
T PRK04266 201 GGFEILEVVDLEPYHKDHAAVVARKK 226 (226)
T ss_pred cCCeEEEEEcCCCCcCCeEEEEEEcC
Confidence 99999998887533 566666553
No 43
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.45 E-value=1.3e-12 Score=124.10 Aligned_cols=155 Identities=12% Similarity=0.050 Sum_probs=113.3
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CCceEEEccCCCCCCCCCEEE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PGVEHVGGDMFVSVPKGDAIF 264 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~~~~~~D~i~ 264 (366)
...+++.+. +.+..+|||||||+|.++..+++.+ +++++++|+ +++++.+++. ..+++...|+.+.....|+|+
T Consensus 156 ~~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 156 LDLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence 334556665 6677899999999999999998765 679999998 8888776643 347777888754322349999
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcC
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAG 344 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 344 (366)
+..++++.++.....++++++++|||||++++.+...+...... . ...+-. . ++++...+.+++.+.++ .|
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~--~---~~i~~y--i-fp~g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV--D---PWINKY--I-FPNGCLPSVRQIAQASE-GL 304 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC--C---CCceee--e-cCCCcCCCHHHHHHHHH-CC
Confidence 99999998877778999999999999999999876554321110 0 011111 1 25778889999888866 58
Q ss_pred CceeEEEECC
Q 017777 345 FQGFQVVSSA 354 (366)
Q Consensus 345 f~~~~~~~~~ 354 (366)
|.+..+...+
T Consensus 305 ~~v~d~~~~~ 314 (383)
T PRK11705 305 FVMEDWHNFG 314 (383)
T ss_pred cEEEEEecCh
Confidence 9988776654
No 44
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.45 E-value=1.5e-13 Score=119.02 Aligned_cols=141 Identities=18% Similarity=0.139 Sum_probs=101.6
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------C----CceEEEccCCCCCCCCCEEEeccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------P----GVEHVGGDMFVSVPKGDAIFIKWI 268 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~----~v~~~~~D~~~~~~~~D~i~~~~~ 268 (366)
+.+|||||||+|.++..|++.. ..++++|. +.+++.|+++ . ++++.+.|.....+.+|+|+++.+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 3779999999999999999954 68999998 8888888764 1 467777777665556799999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC----CccCCHHHHHHHHHHcC
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG----GKERTEQEFRALAKAAG 344 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~t~~e~~~ll~~aG 344 (366)
++|..++ ..+++.+.+.|||+|+|+|.+....-..... -....+........| .+-.+++|...++..+|
T Consensus 168 leHV~dp--~~~l~~l~~~lkP~G~lfittinrt~lS~~~----~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~ 241 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKPNGRLFITTINRTILSFAG----TIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANG 241 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCCCCceEeeehhhhHHHhhc----cccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcC
Confidence 9998665 4889999999999999999876443211100 000111111111111 23458999999999999
Q ss_pred CceeEE
Q 017777 345 FQGFQV 350 (366)
Q Consensus 345 f~~~~~ 350 (366)
+.+..+
T Consensus 242 ~~v~~v 247 (282)
T KOG1270|consen 242 AQVNDV 247 (282)
T ss_pred cchhhh
Confidence 886554
No 45
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.45 E-value=1e-12 Score=129.18 Aligned_cols=144 Identities=21% Similarity=0.264 Sum_probs=108.3
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC---CCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV---SVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~---~~~~~ 260 (366)
.+.+++.++ ..+..+|||||||+|.++..+++.. .+++++|. +.+++.+++ .++++++++|+.+ +++..
T Consensus 26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 345666665 4456799999999999999999875 37899997 777766542 2578999999864 44533
Q ss_pred --CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHH
Q 017777 261 --DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRA 338 (366)
Q Consensus 261 --D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 338 (366)
|+|++..++|++++++...+|++++++|+|||++++.|......... .... .....++..+|.+
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~------~~~~--------~~~~~~~~~~~~~ 168 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS------KRKN--------NPTHYREPRFYTK 168 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc------cccC--------CCCeecChHHHHH
Confidence 99999999999998888899999999999999999998765432100 0000 1122356789999
Q ss_pred HHHHcCCceeE
Q 017777 339 LAKAAGFQGFQ 349 (366)
Q Consensus 339 ll~~aGf~~~~ 349 (366)
++.++||....
T Consensus 169 ~f~~~~~~~~~ 179 (475)
T PLN02336 169 VFKECHTRDED 179 (475)
T ss_pred HHHHheeccCC
Confidence 99999998653
No 46
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.44 E-value=3e-14 Score=109.22 Aligned_cols=87 Identities=22% Similarity=0.356 Sum_probs=58.6
Q ss_pred EEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CC---ceEEEccCCCCCC--CCCEEEeccccccCC
Q 017777 206 VDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PG---VEHVGGDMFVSVP--KGDAIFIKWICHDWS 273 (366)
Q Consensus 206 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~---v~~~~~D~~~~~~--~~D~i~~~~~lh~~~ 273 (366)
||||||+|.++..+++.+|..+++++|+ +.+++.+++. .. +++...|.....+ ..|+|++.++||+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999998 8888777764 12 3333334333222 349999999999994
Q ss_pred hHHHHHHHHHHHHhCCCCcEE
Q 017777 274 DEHCVKFLKNCYEALPVNGKV 294 (366)
Q Consensus 274 ~~~~~~~L~~~~~~L~pgG~l 294 (366)
+...+|+++++.|+|||+|
T Consensus 81 --~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 --DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TSS-EE
T ss_pred --hHHHHHHHHHHHcCCCCCC
Confidence 4458999999999999986
No 47
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.44 E-value=1e-12 Score=114.03 Aligned_cols=103 Identities=17% Similarity=0.334 Sum_probs=88.2
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-CCCceEEEccCCCCCCCC--CEEEeccccccCCh
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-FPGVEHVGGDMFVSVPKG--DAIFIKWICHDWSD 274 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~~~~~--D~i~~~~~lh~~~~ 274 (366)
..+..+|||||||+|..+..+.+..|+.+++++|+ +.+++.+++ .+++.+..+|+.++++.. |+|++..+|||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34567899999999999999999888899999998 889998876 477899999988766543 99999999999987
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
++..++++++.+++ +++++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 78889999999997 5788888875544
No 48
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.44 E-value=9.5e-13 Score=109.75 Aligned_cols=178 Identities=19% Similarity=0.109 Sum_probs=117.7
Q ss_pred HHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCc
Q 017777 174 NKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGV 246 (366)
Q Consensus 174 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v 246 (366)
...|+..|.++.+.....+..-+. .+....||+||||+|..-.. ..--|..+++.+|. +.|-+.+.+ ..++
T Consensus 50 t~~yne~~~~ykrelFs~i~~~~g-k~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 50 TSIYNEIADSYKRELFSGIYYFLG-KSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhc-ccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcce
Confidence 445666666665544444442222 44567889999999987543 23337889999997 666554432 2566
Q ss_pred e-EEEccCCC-C-CCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhh
Q 017777 247 E-HVGGDMFV-S-VPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIM 321 (366)
Q Consensus 247 ~-~~~~D~~~-~-~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~ 321 (366)
. |+.++..+ + .+++ |+|++..+|+... +.++.|++++++|+|||+++++|....+... .........+-..
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve--~~~k~L~e~~rlLRpgG~iifiEHva~~y~~--~n~i~q~v~ep~~ 203 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLCSVE--DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGF--WNRILQQVAEPLW 203 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEeccC--CHHHHHHHHHHhcCCCcEEEEEecccccchH--HHHHHHHHhchhh
Confidence 6 88888776 4 4544 9999999998654 4578999999999999999999998765421 1111222223211
Q ss_pred HhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCceeE
Q 017777 322 LAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYI 359 (366)
Q Consensus 322 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~v 359 (366)
... ..|...|++.| +.|++|-|+..+......+..+
T Consensus 204 ~~~-~dGC~ltrd~~-e~Leda~f~~~~~kr~~~~ttw 239 (252)
T KOG4300|consen 204 HLE-SDGCVLTRDTG-ELLEDAEFSIDSCKRFNFGTTW 239 (252)
T ss_pred hee-ccceEEehhHH-HHhhhcccccchhhcccCCceE
Confidence 222 36777788777 5778899999887776544433
No 49
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.44 E-value=1.7e-12 Score=119.13 Aligned_cols=131 Identities=13% Similarity=0.081 Sum_probs=98.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCC-CCEEEeccccccC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPK-GDAIFIKWICHDW 272 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~-~D~i~~~~~lh~~ 272 (366)
.+.+|||||||+|..+..+++. +.+++++|. +.+++.+++. .++++...|+.. +.+. .|+|++..++|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 3569999999999999999884 578999998 7777765432 367888888876 3443 3999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
++++...+++++.++|+|||+++++.....+....+ .+....++.+|+.++++ +|+++...
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~----------------~p~~~~~~~~el~~~~~--~~~i~~~~ 258 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP----------------MPFSFTFKEGELKDYYQ--DWEIVKYN 258 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC----------------CCCCcccCHHHHHHHhC--CCEEEEEe
Confidence 888888999999999999999888765433321100 01122357899999997 48888764
No 50
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.43 E-value=2.7e-12 Score=110.28 Aligned_cols=125 Identities=18% Similarity=0.301 Sum_probs=95.1
Q ss_pred HHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC-CCEEE
Q 017777 193 LENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK-GDAIF 264 (366)
Q Consensus 193 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~-~D~i~ 264 (366)
+..+. ..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ .+++++.+|...+.+. .|+|+
T Consensus 24 ~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~ 102 (187)
T PRK08287 24 LSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIF 102 (187)
T ss_pred HHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEE
Confidence 34444 56778999999999999999999999999999998 7777766542 4688998887554444 49999
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcC
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAG 344 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 344 (366)
+....++ ...+++.+.+.|+|||++++..... .+.+++.+++++.|
T Consensus 103 ~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~-----------------------------~~~~~~~~~l~~~g 148 (187)
T PRK08287 103 IGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILL-----------------------------ENLHSALAHLEKCG 148 (187)
T ss_pred ECCCccC-----HHHHHHHHHHhcCCCeEEEEEEecH-----------------------------hhHHHHHHHHHHCC
Confidence 8776543 2467999999999999998853211 12456778999999
Q ss_pred CceeEEEE
Q 017777 345 FQGFQVVS 352 (366)
Q Consensus 345 f~~~~~~~ 352 (366)
|+.++++.
T Consensus 149 ~~~~~~~~ 156 (187)
T PRK08287 149 VSELDCVQ 156 (187)
T ss_pred CCcceEEE
Confidence 98766533
No 51
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.43 E-value=4.4e-12 Score=108.17 Aligned_cols=134 Identities=22% Similarity=0.223 Sum_probs=104.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCC-CCCEEEeccccccCC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVP-KGDAIFIKWICHDWS 273 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~-~~D~i~~~~~lh~~~ 273 (366)
+..+|||+|||+|.++..+.+..+ +++++|+ +.+++.++++ .+++++.+|..+..+ ..|+|+++..+|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 357899999999999999998776 8999997 8887766542 357888999876333 349999998887664
Q ss_pred hH-------------------HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHH
Q 017777 274 DE-------------------HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQ 334 (366)
Q Consensus 274 ~~-------------------~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 334 (366)
+. -...+|+.+.++|+|||++++++.... ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~~ 147 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GEP 147 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------ChH
Confidence 32 135789999999999999999764221 146
Q ss_pred HHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 335 EFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 335 e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
++.+++++.||....+..-+.++--++++|.
T Consensus 148 ~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~ 178 (179)
T TIGR00537 148 DTFDKLDERGFRYEIVAERGLFFEELFAIKA 178 (179)
T ss_pred HHHHHHHhCCCeEEEEEEeecCceEEEEEEe
Confidence 7788999999999888888778878888873
No 52
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.42 E-value=8.9e-13 Score=112.75 Aligned_cols=145 Identities=21% Similarity=0.248 Sum_probs=106.6
Q ss_pred eEEEEeCCccHHHHHHHHhCCC--CeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-----CCCCC--CEEEeccc
Q 017777 204 SVVDVGGGIGATLNMIISKYPS--IKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-----SVPKG--DAIFIKWI 268 (366)
Q Consensus 204 ~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-----~~~~~--D~i~~~~~ 268 (366)
+||+||||.|....-+++..|+ +++...|. |.+++..+++ .++...+.|+.. +.+.+ |+|++.++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999999999999988 89999997 8888877764 456666667654 22334 99999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCC--ccCCHHHHHHHHHHcCCc
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGG--KERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~t~~e~~~ll~~aGf~ 346 (366)
|.-.+.+....++++++++|||||.|++-|....+-...... ....++........|- --++.+++.+++.+|||.
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~--~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~ 231 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFK--KGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFE 231 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhcc--CCceeecceEEccCCceeeeccHHHHHHHHHhcccc
Confidence 999998988999999999999999999998755432111000 0111222222222222 235999999999999998
Q ss_pred eeEE
Q 017777 347 GFQV 350 (366)
Q Consensus 347 ~~~~ 350 (366)
.++.
T Consensus 232 ~~~~ 235 (264)
T KOG2361|consen 232 EVQL 235 (264)
T ss_pred hhcc
Confidence 7653
No 53
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.40 E-value=1.9e-13 Score=105.19 Aligned_cols=88 Identities=24% Similarity=0.354 Sum_probs=72.6
Q ss_pred EEEEeCCccHHHHHHHHhC---CCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCC--CCEEEec-ccccc
Q 017777 205 VVDVGGGIGATLNMIISKY---PSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPK--GDAIFIK-WICHD 271 (366)
Q Consensus 205 vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~--~D~i~~~-~~lh~ 271 (366)
|||+|||+|..+..+++.+ |..+++++|+ +.+++.+++. .++++++.|+.+ ++.. .|+|+++ .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5679999998 8888877643 489999999987 5443 3999995 55999
Q ss_pred CChHHHHHHHHHHHHhCCCCc
Q 017777 272 WSDEHCVKFLKNCYEALPVNG 292 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG 292 (366)
+++++...+|+++.+.|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998
No 54
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.40 E-value=6.2e-12 Score=112.22 Aligned_cols=153 Identities=14% Similarity=0.139 Sum_probs=102.4
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHH------hhCC-CCCCceEEEccCCC-CCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVI------QDAP-AFPGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~------~~a~-~~~~v~~~~~D~~~-~~~~ 259 (366)
+..+...++.+ .+++|||||||.|.++.+++.+.+. .++++|. +... +..- ....+..+..-+.+ +...
T Consensus 104 W~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 104 WDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred HHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 34455555323 3689999999999999999998765 6899994 2221 1111 11233333333333 3323
Q ss_pred -CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhh--hhhhhcchhhHhhCCCCccCCHHHH
Q 017777 260 -GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLAS--KVVIHVDCIMLAHNPGGKERTEQEF 336 (366)
Q Consensus 260 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~t~~e~ 336 (366)
.|+|++..||||..++ ...|+.+++.|+|||.|++-..+.+.+......+ ++..+-+. -...|...+
T Consensus 182 ~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv--------~FiPs~~~L 251 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNV--------WFIPSVAAL 251 (315)
T ss_pred CcCEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCce--------EEeCCHHHH
Confidence 3999999999998766 5789999999999999999777766553332111 11111111 234689999
Q ss_pred HHHHHHcCCceeEEEEC
Q 017777 337 RALAKAAGFQGFQVVSS 353 (366)
Q Consensus 337 ~~ll~~aGf~~~~~~~~ 353 (366)
..|++++||+.+++...
T Consensus 252 ~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 252 KNWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHHcCCceEEEecC
Confidence 99999999999998775
No 55
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.40 E-value=6.7e-12 Score=106.65 Aligned_cols=158 Identities=18% Similarity=0.148 Sum_probs=115.6
Q ss_pred eEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhH----HhhCCC--CCCce-EEEccCCCC---CC-------CC-CEEE
Q 017777 204 SVVDVGGGIGATLNMIISKYPSIKGINFDL-PHV----IQDAPA--FPGVE-HVGGDMFVS---VP-------KG-DAIF 264 (366)
Q Consensus 204 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~--~~~v~-~~~~D~~~~---~~-------~~-D~i~ 264 (366)
+|||||+|+|..+..+++.+|++...--|. +.. .....+ .+++. -+..|+.++ .+ .. |+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 599999999999999999999998865564 222 111111 23322 344565542 11 12 9999
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcC
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAG 344 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 344 (366)
+.+++|-.+-+....+++.+.++|+|||.|++.-+...+..-.+. ....+|-.....-+....|..+++.++.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~---SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE---SNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc---HHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 999999999999999999999999999999999987766432221 12234433333224567789999999999999
Q ss_pred CceeEEEECCCceeEEEEEe
Q 017777 345 FQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 345 f~~~~~~~~~~~~~vie~~k 364 (366)
|+.++.+..+...-+++++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 99999999998777777776
No 56
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.39 E-value=3.7e-13 Score=115.88 Aligned_cols=141 Identities=15% Similarity=0.129 Sum_probs=101.9
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CC--ceEEEccCCC-CC--CCCCEEEecccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PG--VEHVGGDMFV-SV--PKGDAIFIKWICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~--v~~~~~D~~~-~~--~~~D~i~~~~~lh~ 271 (366)
...+|||||||.|.++..+++. +.+++++|+ ++.++.|+.+ .. +++.+....+ .. ..+|+|+|..+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 3589999999999999999995 488999998 8889888854 22 4466666554 22 24499999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcc--hhhHhhCCCC-----ccCCHHHHHHHHHHcC
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVD--CIMLAHNPGG-----KERTEQEFRALAKAAG 344 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~t~~e~~~ll~~aG 344 (366)
.++++ .+++.+.+.+||||.+++........ ........ .... +.+.| +...++|+..++.++|
T Consensus 137 v~dp~--~~~~~c~~lvkP~G~lf~STinrt~k------a~~~~i~~ae~vl~-~vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 137 VPDPE--SFLRACAKLVKPGGILFLSTINRTLK------AYLLAIIGAEYVLR-IVPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred cCCHH--HHHHHHHHHcCCCcEEEEeccccCHH------HHHHHHHHHHHHHH-hcCCcchhHHHhcCHHHHHHhcccCC
Confidence 99886 58999999999999999987753221 11111111 1111 11232 3457899999999999
Q ss_pred CceeEEEE
Q 017777 345 FQGFQVVS 352 (366)
Q Consensus 345 f~~~~~~~ 352 (366)
+.+.....
T Consensus 208 ~~~~~~~g 215 (243)
T COG2227 208 LKIIDRKG 215 (243)
T ss_pred ceEEeecc
Confidence 98876544
No 57
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.38 E-value=8.3e-12 Score=110.85 Aligned_cols=147 Identities=14% Similarity=0.100 Sum_probs=98.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCCCCEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPKGDAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~D~i~~~~~lh~ 271 (366)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .++.+..+|+.......|+|++..++|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456799999999999999998864 46899997 7777766542 3789999994323233499999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhh-HhhCCCCccCCHHHHHHHHHHcCCceeEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIM-LAHNPGGKERTEQEFRALAKAAGFQGFQV 350 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 350 (366)
+++++...+++++.+.+++++. +.... .. ............+. ..........+.++|.++++++||++.+.
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~-i~~~~---~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 212 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLI-FTFAP---YT---PLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRT 212 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEE-EEECC---cc---HHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEee
Confidence 9988888999999998754443 33221 10 00000000000000 00001233458899999999999999988
Q ss_pred EECCC
Q 017777 351 VSSAF 355 (366)
Q Consensus 351 ~~~~~ 355 (366)
.+...
T Consensus 213 ~~~~~ 217 (230)
T PRK07580 213 ERISS 217 (230)
T ss_pred eeccc
Confidence 77653
No 58
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.38 E-value=5.5e-12 Score=116.37 Aligned_cols=96 Identities=17% Similarity=0.336 Sum_probs=77.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-----CC--ceEEEccCCCC--CCC-----C-CEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-----PG--VEHVGGDMFVS--VPK-----G-DAI 263 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-----~~--v~~~~~D~~~~--~~~-----~-D~i 263 (366)
...+|||+|||+|..+..|++..+ ..+++++|+ +++++.+++. ++ +.++++|+.+. .+. . .++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 457899999999999999999987 578999998 7777666432 33 56689999762 221 2 345
Q ss_pred EeccccccCChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 264 FIKWICHDWSDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 264 ~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
++..+++++++++...+|++++++|+|||.++|
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 556789999999999999999999999999987
No 59
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.35 E-value=4.9e-11 Score=104.10 Aligned_cols=132 Identities=13% Similarity=0.080 Sum_probs=98.1
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC------------------CCCCceEEEccCCC-CC--
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP------------------AFPGVEHVGGDMFV-SV-- 257 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~~v~~~~~D~~~-~~-- 257 (366)
....+|||+|||.|..+..|++ .+.+++++|+ +.+++.+. +..+|++.++|+++ +.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~--~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAE--QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 4567999999999999999998 5778999998 77777531 12468999999987 32
Q ss_pred -CCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHH
Q 017777 258 -PKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEF 336 (366)
Q Consensus 258 -~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 336 (366)
+..|+|+-..++|+++.+.....++.+.++|+|||++++.....++.... . --...+.+|+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-----------------g-pp~~~~~~eL 172 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-----------------G-PPFSVSPAEV 172 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-----------------C-cCCCCCHHHH
Confidence 22499999999999999888899999999999999988876654321100 0 0123578899
Q ss_pred HHHHHHcCCceeEEEE
Q 017777 337 RALAKAAGFQGFQVVS 352 (366)
Q Consensus 337 ~~ll~~aGf~~~~~~~ 352 (366)
.++|.. +|.+.....
T Consensus 173 ~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 173 EALYGG-HYEIELLES 187 (213)
T ss_pred HHHhcC-CceEEEEee
Confidence 998874 455544433
No 60
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.35 E-value=2e-11 Score=114.80 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=84.6
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---------CCceEEEccCCCCCCC-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---------PGVEHVGGDMFVSVPK- 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~~~~~- 259 (366)
-+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++++ .+++++..|.++..+.
T Consensus 219 llL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 219 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 3555555 33346999999999999999999999999999998 6777766542 2678899998875443
Q ss_pred -CCEEEecccccc---CChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 260 -GDAIFIKWICHD---WSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 260 -~D~i~~~~~lh~---~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.|+|+++-.+|. +++....++++.++++|+|||.++++-
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 499999866654 455556789999999999999999973
No 61
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.32 E-value=3.4e-12 Score=108.91 Aligned_cols=138 Identities=25% Similarity=0.333 Sum_probs=94.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----CCC-ceEEEccCCC--CCC-CCCEEEeccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----FPG-VEHVGGDMFV--SVP-KGDAIFIKWICH 270 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~-v~~~~~D~~~--~~~-~~D~i~~~~~lh 270 (366)
+..+.||+|+|.|+.+..++..+-+ ++-.+|. +..++.|++ ..+ .++.+.-+.+ |.+ .+|+|++.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~-~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFD-EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-S-EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcC-EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 4679999999999999987663311 3444454 666666652 234 3445444433 333 239999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEE
Q 017777 271 DWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQV 350 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 350 (366)
|++|++.+.+|++++.+|+|+|.|+|-|.+...+. ..+|- ..+...|+.+.|+++|++||++++..
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~-----~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE-----EDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET-----TTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC-----ccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 99999999999999999999999999999876531 02221 13566799999999999999999876
Q ss_pred EEC
Q 017777 351 VSS 353 (366)
Q Consensus 351 ~~~ 353 (366)
...
T Consensus 200 ~~Q 202 (218)
T PF05891_consen 200 EKQ 202 (218)
T ss_dssp EE-
T ss_pred ccc
Confidence 554
No 62
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.32 E-value=5.8e-11 Score=101.37 Aligned_cols=129 Identities=21% Similarity=0.171 Sum_probs=95.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCC-CCCEEEecccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVP-KGDAIFIKWICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~-~~D~i~~~~~lh~ 271 (366)
.+.+|||||||+|..+..++...|+.+++++|. +.+++.+++. ++++++.+|+.+ +.. ..|+|++... .
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-~- 122 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-A- 122 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-c-
Confidence 468999999999999999999999999999998 7777766542 459999999876 333 2399998652 2
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
....+++.+++.|+|||++++.+... ...++.++.+..|+.+.+++
T Consensus 123 ----~~~~~l~~~~~~LkpGG~lv~~~~~~------------------------------~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 123 ----SLSDLVELCLPLLKPGGRFLALKGRD------------------------------PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ----CHHHHHHHHHHhcCCCeEEEEEeCCC------------------------------hHHHHHHHHHhcCceEeeeE
Confidence 23578999999999999999875311 13445666777799877665
Q ss_pred EC-----CCceeEEEEEec
Q 017777 352 SS-----AFNTYIMEFLKS 365 (366)
Q Consensus 352 ~~-----~~~~~vie~~k~ 365 (366)
.. .+.......||+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 169 ELTLPGLDGERHLVIIRKK 187 (187)
T ss_pred EEecCCCCCcEEEEEEecC
Confidence 43 245556666664
No 63
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.30 E-value=1.4e-11 Score=113.40 Aligned_cols=147 Identities=12% Similarity=0.026 Sum_probs=94.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----------CCceEEEccCCCCCCCCCEEEeccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----------PGVEHVGGDMFVSVPKGDAIFIKWI 268 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~~~~~~D~i~~~~~ 268 (366)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .++++...|+.+.....|+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 3579999999999999999985 568999998 8888766542 2467888887532223499999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhh-CCCCccCCHHHHHHHHHHcCCce
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAH-NPGGKERTEQEFRALAKAAGFQG 347 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~e~~~ll~~aGf~~ 347 (366)
+||++++....+++.+.+. .+||. +|... +.. ............+.... ......++.++++++|+++||++
T Consensus 222 L~H~p~~~~~~ll~~l~~l-~~g~l-iIs~~--p~~---~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 222 LIHYPQDKADGMIAHLASL-AEKRL-IISFA--PKT---LYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred EEecCHHHHHHHHHHHHhh-cCCEE-EEEeC--Ccc---hHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence 9999887777788888764 55544 44221 111 00000000000000000 00012347999999999999998
Q ss_pred eEEEECCCc
Q 017777 348 FQVVSSAFN 356 (366)
Q Consensus 348 ~~~~~~~~~ 356 (366)
.........
T Consensus 295 ~~~~~~~~~ 303 (315)
T PLN02585 295 ARREMTATQ 303 (315)
T ss_pred EEEEEeecc
Confidence 866554433
No 64
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.30 E-value=3.2e-11 Score=102.68 Aligned_cols=91 Identities=19% Similarity=0.135 Sum_probs=72.0
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC-CCC-CCCEEEeccccccC
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV-SVP-KGDAIFIKWICHDW 272 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~~-~~D~i~~~~~lh~~ 272 (366)
+.+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++++|+.+ +.. ..|+|++.. +|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 67999999999999999998889999999998 666655432 2579999999876 322 349998865 5442
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
..+++.+++.|+|||++++..
T Consensus 122 -----~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 122 -----NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -----HHHHHHHHHhcCCCCEEEEEc
Confidence 357888999999999999863
No 65
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.30 E-value=8.7e-11 Score=109.73 Aligned_cols=107 Identities=19% Similarity=0.233 Sum_probs=82.9
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCCC-CCEEE
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVPK-GDAIF 264 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~-~D~i~ 264 (366)
++..++ .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. -..+++..|.+.+.+. .|+|+
T Consensus 188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIv 266 (342)
T PRK09489 188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMII 266 (342)
T ss_pred HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEE
Confidence 344444 23346899999999999999999999999999998 7777776542 2356778888764443 39999
Q ss_pred eccccccC---ChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 265 IKWICHDW---SDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 265 ~~~~lh~~---~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
++..+|.. .......+++++.+.|+|||.++|+-.
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 99999863 234567999999999999999998653
No 66
>PLN03075 nicotianamine synthase; Provisional
Probab=99.30 E-value=1.4e-11 Score=111.29 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=79.4
Q ss_pred CCCCeEEEEeCCccHHHHH--HHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCCCC---CCCCEEEe
Q 017777 200 EGLNSVVDVGGGIGATLNM--IISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFVSV---PKGDAIFI 265 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~---~~~D~i~~ 265 (366)
.++.+|+|||||.|.++.- +...+|+.+++++|. +++++.|++. ++++|+.+|..+.. .+.|+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3679999999998855444 334679999999998 7777766542 57999999998732 23499999
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
. ++|+|+.++..++|+++.+.|+|||.+++--
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 9999977777899999999999999999954
No 67
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.30 E-value=3.2e-11 Score=107.37 Aligned_cols=145 Identities=14% Similarity=0.086 Sum_probs=96.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-C-CC-C-CCEEEecccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-S-VP-K-GDAIFIKWIC 269 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~-~~-~-~D~i~~~~~l 269 (366)
.+..+|||||||+|.++..+++. ..+++++|. +.+++.+++. .++.++..|+.+ + .+ . .|+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35689999999999999988875 467899997 6666655431 356777777654 2 12 2 3999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhh----CCCCccCCHHHHHHHHHHcCC
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAH----NPGGKERTEQEFRALAKAAGF 345 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~t~~e~~~ll~~aGf 345 (366)
++.++.. .+|+.+.+.|+|||++++........ . ...... ......... .......+.++|.++++++||
T Consensus 125 ~~~~~~~--~~l~~~~~~L~~gG~l~v~~~~~~~~--~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 198 (233)
T PRK05134 125 EHVPDPA--SFVRACAKLVKPGGLVFFSTLNRNLK--S-YLLAIV-GAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGL 198 (233)
T ss_pred hccCCHH--HHHHHHHHHcCCCcEEEEEecCCChH--H-HHHHHh-hHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCC
Confidence 9987654 78999999999999999875421110 0 000000 000000000 001234588999999999999
Q ss_pred ceeEEEE
Q 017777 346 QGFQVVS 352 (366)
Q Consensus 346 ~~~~~~~ 352 (366)
++++...
T Consensus 199 ~~v~~~~ 205 (233)
T PRK05134 199 EVQDITG 205 (233)
T ss_pred eEeeeee
Confidence 9887753
No 68
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.29 E-value=5.9e-12 Score=105.63 Aligned_cols=134 Identities=17% Similarity=0.225 Sum_probs=94.7
Q ss_pred hccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCCCCCCC--CEEEecc
Q 017777 195 NYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFVSVPKG--DAIFIKW 267 (366)
Q Consensus 195 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~~~~~~--D~i~~~~ 267 (366)
.++ -....+++|+|||.|.++..|+.++. +++++|. +..++.+++ .++|+++..|+-+..|.+ |+|+++.
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 355 45668999999999999999999874 6888897 777777753 478999999998765654 9999999
Q ss_pred ccccCCh-HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 268 ICHDWSD-EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 268 ~lh~~~~-~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
++|++++ ++...+++++..+|+|||.|++..... -... .-|.....+.+.++|++. |.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-----------------~~c~---~wgh~~ga~tv~~~~~~~-~~ 173 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD-----------------ANCR---RWGHAAGAETVLEMLQEH-LT 173 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-----------------HHHH---HTT-S--HHHHHHHHHHH-SE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-----------------Cccc---ccCcccchHHHHHHHHHH-hh
Confidence 9999986 678899999999999999999976520 0011 123344678888999886 44
Q ss_pred eeEEEE
Q 017777 347 GFQVVS 352 (366)
Q Consensus 347 ~~~~~~ 352 (366)
.++...
T Consensus 174 ~~~~~~ 179 (201)
T PF05401_consen 174 EVERVE 179 (201)
T ss_dssp EEEEEE
T ss_pred heeEEE
Confidence 444433
No 69
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.25 E-value=2.3e-10 Score=100.26 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=97.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------------------CCCceEEEccCCCCCC-
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------------------FPGVEHVGGDMFVSVP- 258 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~D~~~~~~- 258 (366)
..+..+|||+|||.|..+..|++ .+.+++++|+ +..++.+.. ..+|++.++|+++..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~--~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHh--CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 34567999999999999999998 5789999998 676665311 2468899999997322
Q ss_pred ---CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHH
Q 017777 259 ---KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQE 335 (366)
Q Consensus 259 ---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 335 (366)
..|+|+-..++|+++.+....+++.+.++|+|||+++++....++.... ++ -...+.+|
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~-----------------gP-p~~~~~~e 174 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA-----------------GP-PFSVSDEE 174 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC-----------------CC-CCCCCHHH
Confidence 2399999999999999999999999999999999766654443322100 00 11357899
Q ss_pred HHHHHHHcCCceeEEEE
Q 017777 336 FRALAKAAGFQGFQVVS 352 (366)
Q Consensus 336 ~~~ll~~aGf~~~~~~~ 352 (366)
+.+++.. +|.+.....
T Consensus 175 l~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 175 VEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHhcC-CceEEEeee
Confidence 9999963 366655443
No 70
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.24 E-value=2.9e-11 Score=102.65 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=95.0
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----CCCceEEEccCCC-CCCCC-CE
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----FPGVEHVGGDMFV-SVPKG-DA 262 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~-~~~~~-D~ 262 (366)
.+...++ .-++.++||+|||.|+.+..|++ -+..++.+|. +..++.+++ .-.|+....|+.+ .++.. |+
T Consensus 21 ~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~--~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 21 EVLEAVP-LLKPGKALDLGCGEGRNALYLAS--QGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHHCT-TS-SSEEEEES-TTSHHHHHHHH--TT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHHh-hcCCCcEEEcCCCCcHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence 3555555 55678999999999999999999 5778999997 555544322 2358889999887 55544 99
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHH
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKA 342 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 342 (366)
|++..++++++.+....+++++.+.++|||++++...+..++.. .-.+ ....+...|+.+.+.
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p--------~~~~--------~~f~~~~~EL~~~y~- 160 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYP--------CPSP--------FPFLLKPGELREYYA- 160 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS----------SS----------S--B-TTHHHHHTT-
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCC--------CCCC--------CCcccCHHHHHHHhC-
Confidence 99999999999998899999999999999999997665432210 0011 112245678888887
Q ss_pred cCCceeEEE
Q 017777 343 AGFQGFQVV 351 (366)
Q Consensus 343 aGf~~~~~~ 351 (366)
|++++...
T Consensus 161 -dW~il~y~ 168 (192)
T PF03848_consen 161 -DWEILKYN 168 (192)
T ss_dssp -TSEEEEEE
T ss_pred -CCeEEEEE
Confidence 68876653
No 71
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.24 E-value=2e-10 Score=97.13 Aligned_cols=159 Identities=17% Similarity=0.127 Sum_probs=102.8
Q ss_pred hcccCchHHH----HHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCC
Q 017777 166 YHGKDLRFNK----IFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAP 241 (366)
Q Consensus 166 ~~~~~~~~~~----~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~ 241 (366)
.+.++|+... .|+..+..+....+..+++.+...++...|.|+|||.+.++..+. ...++.-+|+-..
T Consensus 33 lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~----- 104 (219)
T PF05148_consen 33 LFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP----- 104 (219)
T ss_dssp HHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH-----S---EEEEESS-S-----
T ss_pred HHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc---cCceEEEeeccCC-----
Confidence 3445555444 455555666666677788877645566899999999999997654 2357888997322
Q ss_pred CCCCceEEEccCCC-CCCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcc
Q 017777 242 AFPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVD 318 (366)
Q Consensus 242 ~~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~ 318 (366)
+-.+...|+.. |.+.. |+++++-.|.. .+...+|+++.|+|||||.|+|.|....-
T Consensus 105 ---n~~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf--------------- 163 (219)
T PF05148_consen 105 ---NPRVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKSRF--------------- 163 (219)
T ss_dssp ---STTEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGGG----------------
T ss_pred ---CCCEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEecccC---------------
Confidence 22467789976 87765 99999888865 34678999999999999999999864311
Q ss_pred hhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 319 CIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 319 ~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
-..+++.+.++..||+..........+.++++.|.
T Consensus 164 ------------~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~ 198 (219)
T PF05148_consen 164 ------------ENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKI 198 (219)
T ss_dssp ------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-
T ss_pred ------------cCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEc
Confidence 13567888999999999887777788899999875
No 72
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.21 E-value=7.8e-11 Score=104.19 Aligned_cols=142 Identities=18% Similarity=0.086 Sum_probs=96.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCC--C-CCEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVP--K-GDAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~--~-~D~i~~~~~l 269 (366)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.+++. .++++...|+.+ +.+ . .|+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 46799999999999999888754 45889997 6666655431 257888888765 222 2 3999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHh-hCC-----CCccCCHHHHHHHHHHc
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLA-HNP-----GGKERTEQEFRALAKAA 343 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~t~~e~~~ll~~a 343 (366)
|+..+.+ .+|+.++++|+|||.+++.....+.. . ......+..+.. ..+ .....+.++|.++++++
T Consensus 123 ~~~~~~~--~~l~~~~~~L~~gG~l~i~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDPQ--AFIRACAQLLKPGGILFFSTINRTPK---S---YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCHH--HHHHHHHHhcCCCcEEEEEecCCCch---H---HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 9987664 78999999999999999876422110 0 000000000000 000 11234788999999999
Q ss_pred CCceeEEEE
Q 017777 344 GFQGFQVVS 352 (366)
Q Consensus 344 Gf~~~~~~~ 352 (366)
||+++++..
T Consensus 195 G~~i~~~~~ 203 (224)
T TIGR01983 195 GLRVKDVKG 203 (224)
T ss_pred CCeeeeeee
Confidence 999987764
No 73
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.20 E-value=1.3e-10 Score=92.61 Aligned_cols=100 Identities=16% Similarity=0.220 Sum_probs=77.2
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC--C-CC-CC
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV--S-VP-KG 260 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~--~-~~-~~ 260 (366)
+...+. .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|... + .+ ..
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP 89 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence 444454 55567999999999999999999999999999997 777766543 2578888888653 1 22 33
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
|+|++....+ ....+++.+++.|+|||++++.
T Consensus 90 D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 90 DRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 9999876543 2348899999999999999884
No 74
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.20 E-value=2.5e-10 Score=102.73 Aligned_cols=124 Identities=22% Similarity=0.264 Sum_probs=93.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC--CCEEEecccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK--GDAIFIKWICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~--~D~i~~~~~lh~ 271 (366)
...+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++. ++++++.+|++++.+. .|+|+++..++.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 346899999999999999999999999999997 7777766532 4689999999875543 399998543322
Q ss_pred ------CChH------------------HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC
Q 017777 272 ------WSDE------------------HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG 327 (366)
Q Consensus 272 ------~~~~------------------~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
+..+ ....+++++.+.|+|||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------------------
Confidence 2211 124789999999999999987321
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEECC
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~~ 354 (366)
....+++.++|+++||+.+++...-
T Consensus 219 --~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 219 --YDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred --ccHHHHHHHHHHhCCCCceEEEeCC
Confidence 0124678899999999988876653
No 75
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.20 E-value=2.7e-10 Score=98.40 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=91.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC---CCCC--CCEEEeccccccCCh
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV---SVPK--GDAIFIKWICHDWSD 274 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~~~--~D~i~~~~~lh~~~~ 274 (366)
...+|||||||+|.++..+++. ....++++|+ +++++.++. .+++++.+|+.+ +++. .|+|++++++|++++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 4579999999999999888765 4567899998 777776653 468888888865 2433 399999999999876
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCch-h-h-hhh--hhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSL-A-S-KVV--IHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~-~-~-~~~--~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
.. .+|+++.+.++ .+++.-+.......... . . ... ..+...... .+....++.+++.++++++||+++.
T Consensus 91 ~~--~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ll~~~Gf~v~~ 164 (194)
T TIGR02081 91 PE--EILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYN-TPNIHFCTIADFEDLCGELNLRILD 164 (194)
T ss_pred HH--HHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccC-CCCcccCcHHHHHHHHHHCCCEEEE
Confidence 54 67888887655 33332111000000000 0 0 000 000000000 0123456899999999999999987
Q ss_pred EEEC
Q 017777 350 VVSS 353 (366)
Q Consensus 350 ~~~~ 353 (366)
....
T Consensus 165 ~~~~ 168 (194)
T TIGR02081 165 RAAF 168 (194)
T ss_pred EEEe
Confidence 6554
No 76
>PTZ00146 fibrillarin; Provisional
Probab=99.20 E-value=1.2e-09 Score=98.30 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=91.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hh----HHhhCCCCCCceEEEccCCCCC------CCCCEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PH----VIQDAPAFPGVEHVGGDMFVSV------PKGDAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~----~~~~a~~~~~v~~~~~D~~~~~------~~~D~i~~~ 266 (366)
+.+..+|||+|||+|.++..++.... .-+++.+|+ +. +++.+++.++|.++..|+..+. +..|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 56778999999999999999999873 457999997 43 5566665688999999986532 223999887
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
... ++ +...++.++.+.|||||+++|......-+... .-..+-.+|. ++|+++||+
T Consensus 210 va~---pd-q~~il~~na~r~LKpGG~~vI~ika~~id~g~-------------------~pe~~f~~ev-~~L~~~GF~ 265 (293)
T PTZ00146 210 VAQ---PD-QARIVALNAQYFLKNGGHFIISIKANCIDSTA-------------------KPEVVFASEV-QKLKKEGLK 265 (293)
T ss_pred CCC---cc-hHHHHHHHHHHhccCCCEEEEEEeccccccCC-------------------CHHHHHHHHH-HHHHHcCCc
Confidence 641 22 44566778999999999999942211111000 0000002445 889999999
Q ss_pred eeEEEECC
Q 017777 347 GFQVVSSA 354 (366)
Q Consensus 347 ~~~~~~~~ 354 (366)
.++...+.
T Consensus 266 ~~e~v~L~ 273 (293)
T PTZ00146 266 PKEQLTLE 273 (293)
T ss_pred eEEEEecC
Confidence 99888775
No 77
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=7.5e-10 Score=99.19 Aligned_cols=142 Identities=17% Similarity=0.189 Sum_probs=103.8
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC-CC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK-GD 261 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~-~D 261 (366)
+-+++.++ .....+|||+|||.|.++..+++.+|+.+++.+|. ...++.++++ .+..+...|.+++... .|
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd 226 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD 226 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence 34566666 44445999999999999999999999999999997 6677777764 2335677788875544 59
Q ss_pred EEEeccccccCC---hHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHH
Q 017777 262 AIFIKWICHDWS---DEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRA 338 (366)
Q Consensus 262 ~i~~~~~lh~~~---~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 338 (366)
.|+++--+|.=- ..-..++++...+.|++||.|.|+-. +.......+++
T Consensus 227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan----------------------------~~l~y~~~L~~ 278 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN----------------------------RHLPYEKKLKE 278 (300)
T ss_pred EEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc----------------------------CCCChHHHHHH
Confidence 999999998622 22234899999999999999998754 11111233333
Q ss_pred HHHHcCCceeEEEECCCceeEEEEEec
Q 017777 339 LAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 339 ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
+ |..+++....+++.|+.++|.
T Consensus 279 ~-----Fg~v~~la~~~gf~Vl~a~k~ 300 (300)
T COG2813 279 L-----FGNVEVLAKNGGFKVLRAKKA 300 (300)
T ss_pred h-----cCCEEEEEeCCCEEEEEEecC
Confidence 3 455677777889999988874
No 78
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.19 E-value=4.5e-11 Score=100.97 Aligned_cols=98 Identities=23% Similarity=0.310 Sum_probs=78.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC-CC-CEEEecccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP-KG-DAIFIKWICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~~-D~i~~~~~lh~ 271 (366)
...+|||+|||+|.++..+++..|+.+++.+|+ +.+++.++++ .+++++..|.++..+ .. |+|+++--+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 468999999999999999999999999999998 7777776542 338899999998665 33 99999988876
Q ss_pred CCh---HHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 272 WSD---EHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 272 ~~~---~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
-.+ .-..++++.+.+.|+|||.++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 543 235689999999999999997754
No 79
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.18 E-value=4.5e-10 Score=97.95 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=80.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecchhHHhhCCCCCCceEEEccCCCC---------CC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVS---------VP 258 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---------~~ 258 (366)
+.++.+.+.-+.+..+|||||||+|.++..+++.. +..+++++|+.++ ...++++++++|+.++ .+
T Consensus 39 l~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred hHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhC
Confidence 44555555534567899999999999999999986 4568999998553 2236799999998873 33
Q ss_pred C--CCEEEeccccccCChHH---------HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 259 K--GDAIFIKWICHDWSDEH---------CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 259 ~--~D~i~~~~~lh~~~~~~---------~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. .|+|++..+.|...... ...+|+.+.++|+|||++++...
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 3 29999987776654321 24689999999999999999653
No 80
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.17 E-value=5.9e-11 Score=103.10 Aligned_cols=98 Identities=20% Similarity=0.228 Sum_probs=76.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccC-CC-C--CCCC--CEEEecc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDM-FV-S--VPKG--DAIFIKW 267 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~-~~-~--~~~~--D~i~~~~ 267 (366)
...+|||||||+|..+..+++.+|+.+++++|. +.+++.+++ .++++++++|+ .. + ++.+ |+|++.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 567999999999999999999999999999998 778776653 25799999998 33 3 4433 9998865
Q ss_pred ccccCCh------HHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 268 ICHDWSD------EHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 268 ~lh~~~~------~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
....... .....+|++++++|+|||++++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 5432211 113578999999999999999864
No 81
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.16 E-value=5.8e-10 Score=100.24 Aligned_cols=121 Identities=21% Similarity=0.233 Sum_probs=85.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CC----ceEEEccCCCCCCCCCEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PG----VEHVGGDMFVSVPKGDAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~----v~~~~~D~~~~~~~~D~i~~~~~lh~ 271 (366)
....+|||||||+|.++..+++..+ .+++++|+ +.+++.++++ .+ +.+..+|. ..|+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~-- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA-- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH--
Confidence 3568999999999999987766544 36999998 7888777643 22 22222221 34999875332
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
+....+++++.+.|+|||++++...... ..+++.+.+++.||+++++.
T Consensus 190 ---~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 190 ---NPLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred ---HHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 3346789999999999999999754211 24577889999999999888
Q ss_pred ECCCceeEE
Q 017777 352 SSAFNTYIM 360 (366)
Q Consensus 352 ~~~~~~~vi 360 (366)
..+...+++
T Consensus 238 ~~~~W~~~~ 246 (250)
T PRK00517 238 ERGEWVALV 246 (250)
T ss_pred EeCCEEEEE
Confidence 876665553
No 82
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.13 E-value=1.6e-09 Score=98.95 Aligned_cols=135 Identities=21% Similarity=0.231 Sum_probs=96.6
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC--CCEEEecccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK--GDAIFIKWIC 269 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~--~D~i~~~~~l 269 (366)
..+..+|||+|||+|..+..++...|+.+++++|+ +.+++.++++ .++.++.+|++++.+. .|+|+++.-.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567999999999999999999999999999998 7777665532 5799999999875542 3999885322
Q ss_pred cc------CCh------------------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC
Q 017777 270 HD------WSD------------------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN 325 (366)
Q Consensus 270 h~------~~~------------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (366)
.. +.+ +....+++++.+.|+|||++++.-. .
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g---~---------------------- 240 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG---Y---------------------- 240 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC---c----------------------
Confidence 11 111 1235789999999999999988210 0
Q ss_pred CCCccCCHHHHHHHHHHcCCceeEEEEC-CCceeEEEEE
Q 017777 326 PGGKERTEQEFRALAKAAGFQGFQVVSS-AFNTYIMEFL 363 (366)
Q Consensus 326 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~~ 363 (366)
...+++.+++.+.||..+++... .+.-.++.++
T Consensus 241 -----~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 -----DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred -----hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 11356889999999997776543 3444454443
No 83
>PRK14968 putative methyltransferase; Provisional
Probab=99.13 E-value=1.9e-09 Score=92.50 Aligned_cols=123 Identities=22% Similarity=0.265 Sum_probs=89.4
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CC-ceEEEccCCCCCCC--CCEEEeccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PG-VEHVGGDMFVSVPK--GDAIFIKWI 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~-v~~~~~D~~~~~~~--~D~i~~~~~ 268 (366)
.+..+|||+|||+|.++..++.. +.+++++|+ +.+++.+++. .+ +.++.+|+.++.++ .|+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 35678999999999999999887 578999998 7777766432 12 88899998875543 399988654
Q ss_pred cccCC-------------------hHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCc
Q 017777 269 CHDWS-------------------DEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGK 329 (366)
Q Consensus 269 lh~~~-------------------~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (366)
++..+ ......+++++.++|+|||.+++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------------------
Confidence 43211 1224578999999999999988754210
Q ss_pred cCCHHHHHHHHHHcCCceeEEEEC
Q 017777 330 ERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 330 ~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
...+++.+++.++||++......
T Consensus 152 -~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 152 -TGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred -CCHHHHHHHHHHCCCeeeeeeec
Confidence 12356788999999998776544
No 84
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.13 E-value=2e-10 Score=95.99 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=84.8
Q ss_pred EEecc-hhHHhhCCCC---------CCceEEEccCCC-CCCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEE
Q 017777 229 INFDL-PHVIQDAPAF---------PGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVI 295 (366)
Q Consensus 229 ~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~ll 295 (366)
+++|. +.|++.+++. .+++++++|..+ |++.. |+|++.+++|++++. ..+|++++++|||||+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCcCeEEE
Confidence 36787 8888776421 368999999987 77653 999999999999765 488999999999999999
Q ss_pred EEccccCCCCCCchhhhhhhhcc-hhhHhhCCC-----------CccCCHHHHHHHHHHcCCceeEEEECCCce
Q 017777 296 VAESILPVTPDTSLASKVVIHVD-CIMLAHNPG-----------GKERTEQEFRALAKAAGFQGFQVVSSAFNT 357 (366)
Q Consensus 296 i~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 357 (366)
|.|...++.........+..... ......... ....+.+++.++|+++||+.++......+.
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~ 152 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGF 152 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchH
Confidence 99987644311100000000000 000000000 123489999999999999999888775443
No 85
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.12 E-value=1.4e-09 Score=94.03 Aligned_cols=159 Identities=19% Similarity=0.182 Sum_probs=112.6
Q ss_pred hhhcccCchHHHHHHHHhh----hcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhh
Q 017777 164 FDYHGKDLRFNKIFNNGMS----SHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQD 239 (366)
Q Consensus 164 ~~~~~~~~~~~~~~~~~m~----~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 239 (366)
+..+..+|.....|+...+ .|....+..+++.+...++...|.|+|||.+.++.. -...++.+|+..+
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a~--- 210 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASS-----ERHKVHSFDLVAV--- 210 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhc-----cccceeeeeeecC---
Confidence 3345566665555555544 333445666777665455778999999999998861 2236788886433
Q ss_pred CCCCCCceEEEccCCC-CCCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhh
Q 017777 240 APAFPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIH 316 (366)
Q Consensus 240 a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 316 (366)
+-+++..|+.. |.++. |+++++..|.. .+...++++++|+|+|||.++|.|....-
T Consensus 211 -----~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~SRf------------- 269 (325)
T KOG3045|consen 211 -----NERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKSRF------------- 269 (325)
T ss_pred -----CCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhhhc-------------
Confidence 34567789887 77654 99998877765 34678999999999999999998863211
Q ss_pred cchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 317 VDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 317 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
.+...+.+.|...||.+.........+.++++.|.
T Consensus 270 --------------~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~ 304 (325)
T KOG3045|consen 270 --------------SDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKT 304 (325)
T ss_pred --------------ccHHHHHHHHHHcCCeeeehhhhcceEEEEEEecC
Confidence 12345788899999998887777788888888763
No 86
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.12 E-value=1.8e-09 Score=95.62 Aligned_cols=160 Identities=16% Similarity=0.137 Sum_probs=110.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCC--CeEEEecc-hhHHhhCCC------CCCc-eEEEccCCCC--C----CCCCEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPS--IKGINFDL-PHVIQDAPA------FPGV-EHVGGDMFVS--V----PKGDAI 263 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~~~v-~~~~~D~~~~--~----~~~D~i 263 (366)
..+.+||||.||.|.+....+..+|. .++...|. +..++..++ ...+ +|.++|.|+. . |..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999997 67888886 555555443 2444 9999999972 2 233999
Q ss_pred EeccccccCChHHHH-HHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHH
Q 017777 264 FIKWICHDWSDEHCV-KFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKA 342 (366)
Q Consensus 264 ~~~~~lh~~~~~~~~-~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 342 (366)
+.+.++..|+|.+.+ ..|+.+.+++.|||+||....-.... .+.....+.-+.....=-.+.||..|+.+|+++
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ-----le~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~ 288 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ-----LEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEA 288 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc-----hHHHHHHHhcccCCCceEEEecCHHHHHHHHHH
Confidence 999999999998744 57999999999999999876433221 111111111100000001256899999999999
Q ss_pred cCCceeEEEEC-CCceeEEEEEe
Q 017777 343 AGFQGFQVVSS-AFNTYIMEFLK 364 (366)
Q Consensus 343 aGf~~~~~~~~-~~~~~vie~~k 364 (366)
|||+-+...-. .+=++|..++|
T Consensus 289 aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 289 AGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred cCCchhhheeccCCceEEEeecC
Confidence 99986654433 35556665553
No 87
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.12 E-value=9.7e-10 Score=96.49 Aligned_cols=138 Identities=13% Similarity=0.137 Sum_probs=106.0
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC---CCC--CCCEEEe
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV---SVP--KGDAIFI 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~~--~~D~i~~ 265 (366)
.....+|||+|||+|..+..++++.+.++++++++ +.+.+.|++. +||++++.|+.. ..+ ..|+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 44589999999999999999999999999999998 7777777653 799999999876 222 2399999
Q ss_pred ccccccCChH----------------HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCc
Q 017777 266 KWICHDWSDE----------------HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGK 329 (366)
Q Consensus 266 ~~~lh~~~~~----------------~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (366)
+--++.-+.. ...++++.+++.|||||++.++-..
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~----------------------------- 172 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP----------------------------- 172 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-----------------------------
Confidence 8766644332 1368899999999999999987431
Q ss_pred cCCHHHHHHHHHHcCCceeEEEECC------CceeEEEEEecC
Q 017777 330 ERTEQEFRALAKAAGFQGFQVVSSA------FNTYIMEFLKSA 366 (366)
Q Consensus 330 ~~t~~e~~~ll~~aGf~~~~~~~~~------~~~~vie~~k~~ 366 (366)
-...||.+++.+.+|...++..+. ...-+++++|++
T Consensus 173 -erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~ 214 (248)
T COG4123 173 -ERLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGG 214 (248)
T ss_pred -HHHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecCC
Confidence 014578889999999887765542 455677887763
No 88
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.11 E-value=1.6e-10 Score=99.83 Aligned_cols=99 Identities=17% Similarity=0.252 Sum_probs=75.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC-C---CCCC--CEEEecc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV-S---VPKG--DAIFIKW 267 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~---~~~~--D~i~~~~ 267 (366)
...+|||||||+|.++..+++++|+..++++|+ +.+++.+++ ..+++++.+|+.+ + .+.+ |.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 457999999999999999999999999999998 777766543 2589999999865 2 3432 8887765
Q ss_pred ccccCChHH------HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 268 ICHDWSDEH------CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 268 ~lh~~~~~~------~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
..+++.... ...+++.+.++|||||.|++...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 433222110 14689999999999999988653
No 89
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.09 E-value=3.4e-09 Score=97.09 Aligned_cols=132 Identities=14% Similarity=0.152 Sum_probs=94.8
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC--CCEEEec------
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK--GDAIFIK------ 266 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~------ 266 (366)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.++++ .+++++.+|++++.+. .|+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999998 7787766642 3599999999886654 4999885
Q ss_pred -------cccccCCh----------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCc
Q 017777 267 -------WICHDWSD----------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGK 329 (366)
Q Consensus 267 -------~~lh~~~~----------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (366)
.++++-|. .....+++.+.+.|+|||++++ |...
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~-e~g~---------------------------- 246 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC-EIGN---------------------------- 246 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE-EECc----------------------------
Confidence 22332221 1356889999999999998876 2210
Q ss_pred cCCHHHHHHHHH-HcCCceeEEEECC-CceeEEEEEe
Q 017777 330 ERTEQEFRALAK-AAGFQGFQVVSSA-FNTYIMEFLK 364 (366)
Q Consensus 330 ~~t~~e~~~ll~-~aGf~~~~~~~~~-~~~~vie~~k 364 (366)
...+.+.+++. +.||..+++...- +...++.+++
T Consensus 247 -~q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~~ 282 (284)
T TIGR00536 247 -WQQKSLKELLRIKFTWYDVENGRDLNGKERVVLGFY 282 (284)
T ss_pred -cHHHHHHHHHHhcCCCceeEEecCCCCCceEEEEEe
Confidence 01345666777 4689877776653 4445555554
No 90
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.09 E-value=1.5e-09 Score=99.15 Aligned_cols=126 Identities=17% Similarity=0.216 Sum_probs=91.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC--CCEEEeccc--
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK--GDAIFIKWI-- 268 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~~-- 268 (366)
+..+|||+|||+|.++..++..+|+.+++++|+ +.+++.++++ .+++++.+|++++.+. .|+|+++--
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457899999999999999999999999999998 8888776642 4689999999875553 399998511
Q ss_pred -----------cccCCh----------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC
Q 017777 269 -----------CHDWSD----------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG 327 (366)
Q Consensus 269 -----------lh~~~~----------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
+++.|. +....+++.+.+.|+|||++++ |.-
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~-e~g--------------------------- 252 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV-EVG--------------------------- 252 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE-EEC---------------------------
Confidence 111111 1236789999999999999876 210
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEECCCce
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSSAFNT 357 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 357 (366)
.+.+++.+++.+.||.-........++
T Consensus 253 ---~~~~~v~~~~~~~~~~~~~~~~~~~~~ 279 (284)
T TIGR03533 253 ---NSMEALEEAYPDVPFTWLEFENGGDGV 279 (284)
T ss_pred ---cCHHHHHHHHHhCCCceeeecCCCcEE
Confidence 013457778888888776655554443
No 91
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.09 E-value=7.3e-10 Score=100.92 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=72.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCC---CeEEEecc-hhHHhhCCC-CCCceEEEccCCC-CCCCC--CEEEeccccccC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPS---IKGINFDL-PHVIQDAPA-FPGVEHVGGDMFV-SVPKG--DAIFIKWICHDW 272 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~---~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~ 272 (366)
...+|||||||+|.++..+++.++. ..++++|+ +.+++.+++ .+++.+..+|..+ |++.+ |+|++...-
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~--- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP--- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC---
Confidence 4578999999999999999988774 36899998 888887764 3789999999887 76653 999875431
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
..+++++++|+|||+++++.+
T Consensus 162 ------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 162 ------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred ------CCHHHHHhhccCCCEEEEEeC
Confidence 236789999999999999754
No 92
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.08 E-value=2.6e-09 Score=89.67 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=97.0
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC---CCCCC--CEEEeccccccCC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV---SVPKG--DAIFIKWICHDWS 273 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~~~~--D~i~~~~~lh~~~ 273 (366)
+++.+|||+|||.|.++..|.+. .++++.++++ ++.+..+. ..++.++++|+.+ .+|+. |.|+++.+|..+.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 46799999999999999888875 6889999987 44343332 2578899999877 46654 9999999998876
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEEccccCC----------CCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHc
Q 017777 274 DEHCVKFLKNCYEALPVNGKVIVAESILPV----------TPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAA 343 (366)
Q Consensus 274 ~~~~~~~L~~~~~~L~pgG~lli~e~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 343 (366)
.++ .+|+++.|+ |.+.+|.=+-... .+.+........+++ +|+=+..|..+++++.++.
T Consensus 90 ~P~--~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd------TPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 90 RPD--EVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD------TPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred HHH--HHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC------CCCcccccHHHHHHHHHHC
Confidence 654 678887665 5555553221100 000000000011111 3555667999999999999
Q ss_pred CCceeEEEECCC
Q 017777 344 GFQGFQVVSSAF 355 (366)
Q Consensus 344 Gf~~~~~~~~~~ 355 (366)
|+++.+...+.+
T Consensus 159 ~i~I~~~~~~~~ 170 (193)
T PF07021_consen 159 GIRIEERVFLDG 170 (193)
T ss_pred CCEEEEEEEEcC
Confidence 999998877643
No 93
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.06 E-value=3.1e-09 Score=88.58 Aligned_cols=101 Identities=22% Similarity=0.255 Sum_probs=81.3
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC---CCCCCC
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV---SVPKGD 261 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~~~~D 261 (366)
.+..+. ..+..+++|||||+|..+.+++...|..+++.+|. +++++..++ .++++++.+|.-+ +.+..|
T Consensus 26 ~ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 26 TLSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 344555 77889999999999999999999899999999996 666665543 2899999999766 334459
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.||+...-. ...+|+.+...|||||+|++.-.
T Consensus 105 aiFIGGg~~------i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 105 AIFIGGGGN------IEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred EEEECCCCC------HHHHHHHHHHHcCcCCeEEEEee
Confidence 999987732 34889999999999999998543
No 94
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.06 E-value=1e-09 Score=95.55 Aligned_cols=99 Identities=16% Similarity=0.085 Sum_probs=75.1
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC--
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP-- 258 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~-- 258 (366)
..+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|. +.+++.++++ .+++++.+|..+..+
T Consensus 62 ~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 62 AMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 34555554 55678999999999999998888764 558999998 7777666532 358899999877333
Q ss_pred -CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 259 -KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 259 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
..|+|++...+++++ +++.+.|+|||+|++.
T Consensus 141 ~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 141 APFDAIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred CCccEEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 239999998887654 3567899999999884
No 95
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.05 E-value=5.8e-09 Score=98.45 Aligned_cols=134 Identities=19% Similarity=0.183 Sum_probs=96.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCC-C--CCEEEeccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVP-K--GDAIFIKWICH 270 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~-~--~D~i~~~~~lh 270 (366)
+..+|||+|||+|.++..++...|+.+++++|+ +.+++.++++ .+++++.+|+++ ..+ . .|+|+++--..
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 456999999999999999999999999999998 8888877653 478999999976 333 2 39999864321
Q ss_pred cCCh-----------------------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC
Q 017777 271 DWSD-----------------------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG 327 (366)
Q Consensus 271 ~~~~-----------------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
.-.+ +-...+++.+.+.|+|||.+++ |.-.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~-------------------------- 383 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF-------------------------- 383 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc--------------------------
Confidence 1000 1134778888899999998765 3211
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEECC-CceeEEEEEe
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSSA-FNTYIMEFLK 364 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~k 364 (366)
...+.+.+++++.||..+++...- +...++.+++
T Consensus 384 ---~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 384 ---DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred ---cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence 114578889999999988877654 4455555554
No 96
>PHA03411 putative methyltransferase; Provisional
Probab=99.05 E-value=2.2e-09 Score=95.70 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=91.8
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCC-CCCC-CCEEEeccccccCChHHH
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFV-SVPK-GDAIFIKWICHDWSDEHC 277 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~-~D~i~~~~~lh~~~~~~~ 277 (366)
..+|||+|||+|.++..++.+.+..+++++|+ +.+++.+++. ++++++.+|+.+ ..+. .|+|+++..+++.+..+.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 46899999999999999988887789999998 8888877753 689999999987 3233 499999888877654322
Q ss_pred ------------------HHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 278 ------------------VKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 278 ------------------~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
..+++.....|+|+|.++++=. .. + .+ ....+.++++.+
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ys---s~------~----~y----------~~sl~~~~y~~~ 201 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYS---GR------P----YY----------DGTMKSNKYLKW 201 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEe---cc------c----cc----------cccCCHHHHHHH
Confidence 3566777888889987766511 10 0 00 112368899999
Q ss_pred HHHcCCce
Q 017777 340 AKAAGFQG 347 (366)
Q Consensus 340 l~~aGf~~ 347 (366)
|+++||..
T Consensus 202 l~~~g~~~ 209 (279)
T PHA03411 202 SKQTGLVT 209 (279)
T ss_pred HHhcCcEe
Confidence 99999974
No 97
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.00 E-value=1.8e-09 Score=101.16 Aligned_cols=107 Identities=17% Similarity=0.311 Sum_probs=79.2
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC---CCCCC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV---SVPKG 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~~~~ 260 (366)
.+...+. -.....+||||||+|.++..++..+|+..++++|+ +.+++.+.+ ..++.++.+|... .++.+
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 4555554 33456899999999999999999999999999997 666655432 2689999999743 45544
Q ss_pred --CEEEeccccccCChH-H----HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 261 --DAIFIKWICHDWSDE-H----CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 261 --D~i~~~~~lh~~~~~-~----~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
|.|++.+... |+.. . ...+|+.++++|+|||.+.+..-
T Consensus 192 s~D~I~lnFPdP-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVP-WDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCC-ccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 8888754332 3221 1 14789999999999999999653
No 98
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.00 E-value=6.8e-09 Score=95.78 Aligned_cols=94 Identities=18% Similarity=0.263 Sum_probs=74.3
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC--CCEEEeccc----
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK--GDAIFIKWI---- 268 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~~---- 268 (366)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.++++ .+++++++|+++..+. .|+|+++--
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999998 8888777543 4699999998875543 399998621
Q ss_pred ---------cccCCh----------HHHHHHHHHHHHhCCCCcEEEE
Q 017777 269 ---------CHDWSD----------EHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 269 ---------lh~~~~----------~~~~~~L~~~~~~L~pgG~lli 296 (366)
+++.|. +....+++++.+.|+|||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 121121 2246889999999999999887
No 99
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.00 E-value=2.7e-09 Score=93.42 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=76.0
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCC-C--
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSV-P-- 258 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~-~-- 258 (366)
..++..+. +.+..+|||||||+|..+..+++.. ++.+++++|. +++++.+++. .+++++.+|..... +
T Consensus 66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 34555565 6778999999999999998888875 4568999997 7887776542 57999999987632 2
Q ss_pred CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 259 KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 259 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
..|+|++....+..+ +.+.+.|+|||+|++..
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 239999887765433 35667899999998853
No 100
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.99 E-value=5.2e-09 Score=90.69 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=73.7
Q ss_pred HhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--C-C-CCC
Q 017777 194 ENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--S-V-PKG 260 (366)
Q Consensus 194 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~-~~~ 260 (366)
..+. .....+|||+|||+|.++..++... +..+++++|. +.+++.++++ +++.++.+|..+ + . +..
T Consensus 34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 3444 6677899999999999999988764 5678999998 7787765432 478888888865 2 2 223
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
|+|++... ..+...+|+.+.+.|+|||++++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99987532 23345789999999999999986
No 101
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.98 E-value=2.1e-09 Score=88.19 Aligned_cols=122 Identities=17% Similarity=0.158 Sum_probs=90.8
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------C-CCceEEEccCCCC-CCC--CCEEEecccccc
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------F-PGVEHVGGDMFVS-VPK--GDAIFIKWICHD 271 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~D~~~~-~~~--~D~i~~~~~lh~ 271 (366)
.+|||+|||.|.++..|++.-=.-..+++|. +.+++.|+. . +.|+|.+.|+.+| +-. .|+|+=..++.-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 3999999999999999998754445788887 777666543 2 3499999999984 322 288766554432
Q ss_pred C------ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCC
Q 017777 272 W------SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGF 345 (366)
Q Consensus 272 ~------~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 345 (366)
+ +.......+..+.+.|+|||.++|..- .+|.+|+.+.++.-||
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------------N~T~dELv~~f~~~~f 198 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------------NFTKDELVEEFENFNF 198 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------------CccHHHHHHHHhcCCe
Confidence 2 222235788999999999999999531 2578999999999999
Q ss_pred ceeEEEECC
Q 017777 346 QGFQVVSSA 354 (366)
Q Consensus 346 ~~~~~~~~~ 354 (366)
+....+|.+
T Consensus 199 ~~~~tvp~p 207 (227)
T KOG1271|consen 199 EYLSTVPTP 207 (227)
T ss_pred EEEEeeccc
Confidence 998888765
No 102
>PRK14967 putative methyltransferase; Provisional
Probab=98.98 E-value=1.4e-08 Score=89.65 Aligned_cols=101 Identities=15% Similarity=0.054 Sum_probs=72.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCCC--CCEEEeccccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVPK--GDAIFIKWICH 270 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~--~D~i~~~~~lh 270 (366)
..+..+|||+|||+|.++..++.. +..+++++|+ +.+++.++++ .++.++.+|+.+..+. .|+|+++.-.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 455689999999999999988875 3348899998 7777655432 3578888998764443 39999874332
Q ss_pred cCCh-------------------HHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 271 DWSD-------------------EHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 271 ~~~~-------------------~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
.-+. .....+++++.+.|+|||+++++...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 1111 11346889999999999999986543
No 103
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.97 E-value=3.7e-09 Score=92.88 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=75.2
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC---
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP--- 258 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~--- 258 (366)
..++..+. ..+..+|||||||+|.++..+++..+ +.+++++|. +.+++.++++ ++++++.+|..+..+
T Consensus 67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 34555555 66788999999999999999998864 467899997 7777766542 579999999876322
Q ss_pred CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 259 KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 259 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
..|+|++.....+. .+.+.+.|+|||++++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 24999987665443 45577899999999885
No 104
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.96 E-value=7.3e-09 Score=95.00 Aligned_cols=118 Identities=15% Similarity=0.152 Sum_probs=82.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC-CCCEEEecccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP-KGDAIFIKWICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~-~~D~i~~~~~lh~ 271 (366)
+..+|||||||+|.++..+++. +..+++++|+ +.+++.++++ .++.+...+.....+ ..|+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 4589999999999999887764 4458999998 7777776542 345566655333222 33999986543
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
+....++.++.+.|+|||++++...... ..+++.+.+++. |+++++.
T Consensus 236 ---~~l~~ll~~~~~~LkpgG~li~sgi~~~-----------------------------~~~~v~~~~~~~-f~~~~~~ 282 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKPGGWLILSGILET-----------------------------QAQSVCDAYEQG-FTVVEIR 282 (288)
T ss_pred ---HHHHHHHHHHHHHcCCCcEEEEEeCcHh-----------------------------HHHHHHHHHHcc-CceeeEe
Confidence 2346789999999999999999754211 145666777765 8877765
Q ss_pred ECC
Q 017777 352 SSA 354 (366)
Q Consensus 352 ~~~ 354 (366)
..+
T Consensus 283 ~~~ 285 (288)
T TIGR00406 283 QRE 285 (288)
T ss_pred ccC
Confidence 543
No 105
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.95 E-value=5.5e-09 Score=90.42 Aligned_cols=101 Identities=17% Similarity=0.224 Sum_probs=76.2
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC---CCC-CC
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV---SVP-KG 260 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~---~~~-~~ 260 (366)
++..+. .....+|||+|||+|.++..++...|+.+++++|. +.+++.++++ .+++++.+|..+ ... ..
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 444454 56678999999999999999998888889999998 8887766542 578999998754 122 23
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
|.+++.. ......+++++.+.|+|||++++...
T Consensus 111 d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 6655421 12345889999999999999999754
No 106
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.94 E-value=8.6e-09 Score=101.46 Aligned_cols=123 Identities=18% Similarity=0.220 Sum_probs=91.1
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC--CCEEEeccc---
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK--GDAIFIKWI--- 268 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~~--- 268 (366)
..+|||+|||+|.++..++..+|+.+++++|+ +.+++.++++ ++++++.+|+++..+. .|+|+++--
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999998 7788777642 4789999998875443 399998421
Q ss_pred -----------cccCCh----------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC
Q 017777 269 -----------CHDWSD----------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG 327 (366)
Q Consensus 269 -----------lh~~~~----------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
..+.|. +....+++.+.+.|+|||.+++ |.-.
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~-------------------------- 271 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF-------------------------- 271 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC--------------------------
Confidence 111110 1235688899999999999876 3210
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEECC
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~~ 354 (366)
...+.+.+++.+.||..+++...-
T Consensus 272 ---~q~~~v~~~~~~~g~~~~~~~~D~ 295 (506)
T PRK01544 272 ---KQEEAVTQIFLDHGYNIESVYKDL 295 (506)
T ss_pred ---chHHHHHHHHHhcCCCceEEEecC
Confidence 014567888899999988777654
No 107
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=1.4e-08 Score=91.68 Aligned_cols=125 Identities=21% Similarity=0.205 Sum_probs=88.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CCce----EEEccCCC-CCC-CCCEEEecccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PGVE----HVGGDMFV-SVP-KGDAIFIKWIC 269 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~----~~~~D~~~-~~~-~~D~i~~~~~l 269 (366)
.++.+|||+|||+|.+++..++... .+++++|+ |..++.++++ .++. ....+..+ +.. ..|+|+++= |
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 4789999999999999998877543 37899998 7777777653 3333 22233322 222 349998753 4
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
.+-...+...+++.++|||++++.-.+.. ..+...+.+.++||++++
T Consensus 239 ----A~vl~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------q~~~V~~a~~~~gf~v~~ 285 (300)
T COG2264 239 ----AEVLVELAPDIKRLLKPGGRLILSGILED-----------------------------QAESVAEAYEQAGFEVVE 285 (300)
T ss_pred ----HHHHHHHHHHHHHHcCCCceEEEEeehHh-----------------------------HHHHHHHHHHhCCCeEeE
Confidence 23456899999999999999999754321 145677889999999999
Q ss_pred EEECCCceeE
Q 017777 350 VVSSAFNTYI 359 (366)
Q Consensus 350 ~~~~~~~~~v 359 (366)
+.......++
T Consensus 286 ~~~~~eW~~i 295 (300)
T COG2264 286 VLEREEWVAI 295 (300)
T ss_pred EEecCCEEEE
Confidence 8887555444
No 108
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.92 E-value=3.1e-08 Score=88.94 Aligned_cols=121 Identities=19% Similarity=0.118 Sum_probs=87.6
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CCceEEEccCCCCCC----C-CCEEEeccccc--
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PGVEHVGGDMFVSVP----K-GDAIFIKWICH-- 270 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~~~~----~-~D~i~~~~~lh-- 270 (366)
..+|||+|||+|.++..+++..|+.+++++|+ +.+++.++++ .+++++.+|+++..+ . .|+|+++--..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999999999999999999999998 8888877653 346889999876332 2 39998864321
Q ss_pred ----cCChH------------------HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCC
Q 017777 271 ----DWSDE------------------HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGG 328 (366)
Q Consensus 271 ----~~~~~------------------~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (366)
..+++ -...+++.+.+.|+|||++++.-.. +
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~--~------------------------- 219 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE--R------------------------- 219 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--c-------------------------
Confidence 11111 1347888899999999999874210 0
Q ss_pred ccCCHHHHHHHHHHcCCceeEEEE
Q 017777 329 KERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 329 ~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
...++.+++++.||+..-...
T Consensus 220 ---~~~~v~~~l~~~g~~~~~~~~ 240 (251)
T TIGR03704 220 ---QAPLAVEAFARAGLIARVASS 240 (251)
T ss_pred ---hHHHHHHHHHHCCCCceeeEc
Confidence 134677888999998654443
No 109
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.91 E-value=2.4e-08 Score=87.25 Aligned_cols=101 Identities=12% Similarity=0.071 Sum_probs=83.8
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------------------CCCceEEEccCCC-CC-
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------------------FPGVEHVGGDMFV-SV- 257 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~D~~~-~~- 257 (366)
..+..+||+.|||.|.-+..|+. -+.+++++|+ +..++.+.+ ..++++.++|+++ +.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~--~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLS--KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHh--CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 34568999999999999999988 5678999998 666766411 1479999999998 32
Q ss_pred C----CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 258 P----KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 258 ~----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
+ ..|+|+=..+|+.++++...+..+.+.++|+|||.++++....
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 1 2399999999999999999999999999999999999987643
No 110
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.91 E-value=5.7e-09 Score=94.98 Aligned_cols=125 Identities=18% Similarity=0.150 Sum_probs=85.4
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC--CCCEEEecccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP--KGDAIFIKWIC 269 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~--~~D~i~~~~~l 269 (366)
.+..+|||||||+|.+++..++... -+++++|+ |.+++.++++ .++.+. . ..+.+ .+|+|+.+-..
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVANILA 235 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEES-H
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEECCCH
Confidence 3557999999999999998777543 37899998 7777766653 344332 1 12222 33998865332
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
+-...++..+.+.|+|||++++.-.... ..+++.+.+++ ||++++
T Consensus 236 -----~vL~~l~~~~~~~l~~~G~lIlSGIl~~-----------------------------~~~~v~~a~~~-g~~~~~ 280 (295)
T PF06325_consen 236 -----DVLLELAPDIASLLKPGGYLILSGILEE-----------------------------QEDEVIEAYKQ-GFELVE 280 (295)
T ss_dssp -----HHHHHHHHHCHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHT-TEEEEE
T ss_pred -----HHHHHHHHHHHHhhCCCCEEEEccccHH-----------------------------HHHHHHHHHHC-CCEEEE
Confidence 3456888899999999999999655321 14567788877 999998
Q ss_pred EEECCCceeEEEEEe
Q 017777 350 VVSSAFNTYIMEFLK 364 (366)
Q Consensus 350 ~~~~~~~~~vie~~k 364 (366)
....++..++ .++|
T Consensus 281 ~~~~~~W~~l-~~~K 294 (295)
T PF06325_consen 281 EREEGEWVAL-VFKK 294 (295)
T ss_dssp EEEETTEEEE-EEEE
T ss_pred EEEECCEEEE-EEEe
Confidence 8887666555 4444
No 111
>PRK04457 spermidine synthase; Provisional
Probab=98.91 E-value=3.6e-09 Score=95.48 Aligned_cols=97 Identities=21% Similarity=0.319 Sum_probs=75.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC---CCCC-CCEEEecc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV---SVPK-GDAIFIKW 267 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~~~-~D~i~~~~ 267 (366)
+++.+|||||||+|.++..+++.+|+.+++++|+ |++++.++++ ++++++.+|..+ ..+. .|+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3567999999999999999999999999999998 8888877642 679999999865 2333 49998752
Q ss_pred cccc--CChH-HHHHHHHHHHHhCCCCcEEEEE
Q 017777 268 ICHD--WSDE-HCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 268 ~lh~--~~~~-~~~~~L~~~~~~L~pgG~lli~ 297 (366)
++. .+.. ....+++++++.|+|||.+++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 221 1211 1258999999999999999985
No 112
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.90 E-value=5.1e-09 Score=89.13 Aligned_cols=146 Identities=13% Similarity=0.116 Sum_probs=99.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceE-EE---ccCCCCC-C-CCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEH-VG---GDMFVSV-P-KGD 261 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~-~~---~D~~~~~-~-~~D 261 (366)
+.+++...+ .....++||+|||||..+..|..... +.+++|+ ..|++.+.++.-... .+ .+|.... + ..|
T Consensus 114 l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D 190 (287)
T COG4976 114 LAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD 190 (287)
T ss_pred HHHHHHhcc-CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence 334444444 44589999999999999988877544 5678898 889988876532211 11 1233322 2 339
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHH
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAK 341 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 341 (366)
+|+...||-++.+-+ .++-.+...|+|||.+.+.-...+.+... ...- ......+..-+.+++.
T Consensus 191 Li~AaDVl~YlG~Le--~~~~~aa~~L~~gGlfaFSvE~l~~~~~f--------~l~p------s~RyAH~~~YVr~~l~ 254 (287)
T COG4976 191 LIVAADVLPYLGALE--GLFAGAAGLLAPGGLFAFSVETLPDDGGF--------VLGP------SQRYAHSESYVRALLA 254 (287)
T ss_pred chhhhhHHHhhcchh--hHHHHHHHhcCCCceEEEEecccCCCCCe--------ecch------hhhhccchHHHHHHHH
Confidence 999999999887654 77999999999999999976655543211 0000 0111235677889999
Q ss_pred HcCCceeEEEEC
Q 017777 342 AAGFQGFQVVSS 353 (366)
Q Consensus 342 ~aGf~~~~~~~~ 353 (366)
..||+++++.++
T Consensus 255 ~~Gl~~i~~~~t 266 (287)
T COG4976 255 ASGLEVIAIEDT 266 (287)
T ss_pred hcCceEEEeecc
Confidence 999999988765
No 113
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.90 E-value=1.1e-08 Score=88.04 Aligned_cols=103 Identities=18% Similarity=0.247 Sum_probs=74.6
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecchhHHhhCCCCCCceEEEccCCCC---------CCC-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVS---------VPK- 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---------~~~- 259 (366)
.+...+....+..+|||+|||+|.++..+++.+ +..+++++|+.+.. ..++++++++|+.++ .+.
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 344445545678899999999999999998887 56789999984432 246788999998752 232
Q ss_pred -CCEEEeccccc---cCCh------HHHHHHHHHHHHhCCCCcEEEEE
Q 017777 260 -GDAIFIKWICH---DWSD------EHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 260 -~D~i~~~~~lh---~~~~------~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
.|+|++....| .|.. +....+|+.+.+.|+|||++++.
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 39999854322 1111 12357899999999999999985
No 114
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.89 E-value=1.2e-08 Score=77.57 Aligned_cols=92 Identities=25% Similarity=0.303 Sum_probs=73.6
Q ss_pred eEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC------CCCCceEEEccCCCCC---CCC-CEEEeccccccC
Q 017777 204 SVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP------AFPGVEHVGGDMFVSV---PKG-DAIFIKWICHDW 272 (366)
Q Consensus 204 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~D~~~~~---~~~-D~i~~~~~lh~~ 272 (366)
+|+|+|||.|..+..+++ .+..+++++|. +..++.++ ...++++...|+.+.. +.. |++++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67778999997 55555443 1267899999988732 233 999999999875
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
.+....+++.+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 455678999999999999999875
No 115
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.86 E-value=3e-09 Score=83.83 Aligned_cols=95 Identities=23% Similarity=0.284 Sum_probs=73.9
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC-C--CCCC--CEEEecccc
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV-S--VPKG--DAIFIKWIC 269 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~--~~~~--D~i~~~~~l 269 (366)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .++++++.+|+++ . .+.. |+|+++--+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999998 777766553 2579999999977 3 4433 999998776
Q ss_pred ccCCh------HHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 270 HDWSD------EHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 270 h~~~~------~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
+.... +....+++++.+.|+|||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 54321 124588999999999999998864
No 116
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.86 E-value=3.4e-08 Score=92.45 Aligned_cols=105 Identities=18% Similarity=0.053 Sum_probs=75.3
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCC--C
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPK--G 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~--~ 260 (366)
.+++... +.+..+|||+|||+|.++..++. .+.+++++|+ +.+++.++.+ .++.+..+|+.+ +.+. .
T Consensus 173 ~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 173 AMVNLAR-VTEGDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHHhC-CCCcCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCC
Confidence 3344333 66778999999999999888665 4678999998 7777655432 457889999987 5543 2
Q ss_pred CEEEecccccc-------CChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 261 DAIFIKWICHD-------WSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 261 D~i~~~~~lh~-------~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
|+|++..-+.. ...+-..++|+.+.+.|+|||++++.-
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 99998532211 111224689999999999999998864
No 117
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=1.3e-08 Score=87.46 Aligned_cols=98 Identities=20% Similarity=0.282 Sum_probs=73.8
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----------C----------------------
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----------P---------------------- 244 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~---------------------- 244 (366)
|-.+..+|||||..|.++..+++.+....++++|+ +..+..|+++ .
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 55778999999999999999999998888999998 6667766542 0
Q ss_pred --------C-------ceEEEccCCC-CCCCCCEEEeccc----cccCChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 245 --------G-------VEHVGGDMFV-SVPKGDAIFIKWI----CHDWSDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 245 --------~-------v~~~~~D~~~-~~~~~D~i~~~~~----lh~~~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
+ ..+...|+.+ ..++.|+|+|-.+ -=+|.|+-...+++++++.|.|||+|++
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 1 1122223333 3345588876433 2367899999999999999999999987
No 118
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.81 E-value=5.2e-08 Score=85.28 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=99.3
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC--C----------------CCCceEEEc
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP--A----------------FPGVEHVGG 251 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--~----------------~~~v~~~~~ 251 (366)
.+.+.+. .....+||..|||.|.-+..|++. +.+++++|+ +.+++.+. . ..+|++.++
T Consensus 28 ~~~~~l~-~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 28 EYLDSLA-LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHT-TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHhcC-CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 3444443 556789999999999999999984 679999998 77776651 1 146899999
Q ss_pred cCCC-CCCC---CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCC-CCchhhhhhhhcchhhHhhCC
Q 017777 252 DMFV-SVPK---GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTP-DTSLASKVVIHVDCIMLAHNP 326 (366)
Q Consensus 252 D~~~-~~~~---~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 326 (366)
|+|+ +... .|+|+=..+|+-++++.+.+..+.+.++|+|||+++++....+... .+++
T Consensus 105 DfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPP----------------- 167 (218)
T PF05724_consen 105 DFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPP----------------- 167 (218)
T ss_dssp -TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS-----------------
T ss_pred ccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcC-----------------
Confidence 9998 3222 3999999999999999999999999999999999655554333221 0110
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 327 GGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 327 ~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
...+.+|+.++|. .+|++.....
T Consensus 168 --f~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 168 --FSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp ------HHHHHHHHT-TTEEEEEEEE
T ss_pred --CCCCHHHHHHHhc-CCcEEEEEec
Confidence 1136889999999 7888766543
No 119
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.80 E-value=2.6e-08 Score=88.25 Aligned_cols=153 Identities=17% Similarity=0.260 Sum_probs=86.7
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCcc--HHHHHH-HHhCCCCeEEEecc-hhHHhhCCC----CCC--ceEEEccCCCC--
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIG--ATLNMI-ISKYPSIKGINFDL-PHVIQDAPA----FPG--VEHVGGDMFVS-- 256 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G--~~~~~l-~~~~p~~~~~~~D~-~~~~~~a~~----~~~--v~~~~~D~~~~-- 256 (366)
+...++.+..-.+..++||||||.- ....++ .+..|+.+++-+|. |-++..++. .++ ..++.+|+.+|
T Consensus 56 l~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~ 135 (267)
T PF04672_consen 56 LRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEA 135 (267)
T ss_dssp HHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHH
T ss_pred HHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHH
Confidence 3344554442237899999999943 234444 44479999999998 777776653 345 88999999873
Q ss_pred ---CCC-------C--CEEEeccccccCCh-HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHh
Q 017777 257 ---VPK-------G--DAIFIKWICHDWSD-EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLA 323 (366)
Q Consensus 257 ---~~~-------~--D~i~~~~~lh~~~~-~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (366)
.|+ . =.+++..+||+.+| ++...+++.++++|.||++|.|.....+..+.. .......+...
T Consensus 136 iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~-----~~~~~~~~~~~ 210 (267)
T PF04672_consen 136 ILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPER-----AEALEAVYAQA 210 (267)
T ss_dssp HHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHH-----HHHHHHHHHHC
T ss_pred HhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHH-----HHHHHHHHHcC
Confidence 111 1 46788999999987 577899999999999999999998876432111 11122222221
Q ss_pred hCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 324 HNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 324 ~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
......||.+|+.++|. ||+.++
T Consensus 211 -~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 211 -GSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp -CS----B-HHHHHHCCT--TSEE-T
T ss_pred -CCCceecCHHHHHHHcC--CCccCC
Confidence 23567899999999998 888653
No 120
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.79 E-value=1.9e-07 Score=84.77 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=75.4
Q ss_pred CCCeEEEEeCCccHHHHH----HHHhCC----CCeEEEecc-hhHHhhCCCC----------------------------
Q 017777 201 GLNSVVDVGGGIGATLNM----IISKYP----SIKGINFDL-PHVIQDAPAF---------------------------- 243 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~----l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 243 (366)
+..+|.-.||++|.-... +.+..+ ++++++.|+ +.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 347999999999973333 333222 467899998 7777665431
Q ss_pred ---------CCceEEEccCCC-CCC--CC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 244 ---------PGVEHVGGDMFV-SVP--KG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 244 ---------~~v~~~~~D~~~-~~~--~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.+|+|..+|..+ ++| .. |+|+|.++|.+++++...+++++++++|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 347899999987 444 23 99999999999999988999999999999999988854
No 121
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.78 E-value=8.4e-09 Score=88.54 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=68.8
Q ss_pred CCCeEEEEeCCccHHHHH----HHHh---CC--CCeEEEecc-hhHHhhCCCC---------------------------
Q 017777 201 GLNSVVDVGGGIGATLNM----IISK---YP--SIKGINFDL-PHVIQDAPAF--------------------------- 243 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~----l~~~---~p--~~~~~~~D~-~~~~~~a~~~--------------------------- 243 (366)
+..+|.-+||++|.-... +.+. .. ++++++.|+ +.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 568999999999973333 2331 12 467888898 7778776541
Q ss_pred -------CCceEEEccCCC-CCCC-C-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 244 -------PGVEHVGGDMFV-SVPK-G-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 244 -------~~v~~~~~D~~~-~~~~-~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+|.|...|..+ +.+. . |+|+|.|||-+|+++...++++++++.|+|||+|++-..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 469999999998 3332 3 999999999999999899999999999999999999553
No 122
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.78 E-value=8.6e-09 Score=67.46 Aligned_cols=51 Identities=51% Similarity=0.774 Sum_probs=43.1
Q ss_pred HHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHh
Q 017777 35 MVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLA 86 (366)
Q Consensus 35 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~ 86 (366)
++|++|++|||||.|.+.+ ++|+|..||+.++...+|..+..++|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g-~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAG-GGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHT-TS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcC-CCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 5899999999999999874 47999999999999446667889999999985
No 123
>PRK00811 spermidine synthase; Provisional
Probab=98.78 E-value=2.5e-08 Score=91.10 Aligned_cols=98 Identities=24% Similarity=0.269 Sum_probs=73.4
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----------CCCceEEEccCCC--CCC--CCCEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----------FPGVEHVGGDMFV--SVP--KGDAI 263 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~--~~~--~~D~i 263 (366)
+++.+||+||||.|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+ ..+ ..|+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4578999999999999999987645557899998 888877654 2579999999876 222 23999
Q ss_pred EeccccccCChHH--HHHHHHHHHHhCCCCcEEEEE
Q 017777 264 FIKWICHDWSDEH--CVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 264 ~~~~~lh~~~~~~--~~~~L~~~~~~L~pgG~lli~ 297 (366)
++...-+..+... ...+++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9854333222221 257899999999999998874
No 124
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.77 E-value=4.7e-08 Score=85.67 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=72.2
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC---CC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP---KG 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~---~~ 260 (366)
.++..+. ..+..+|||||||+|..+..+++... +++++|. +.+++.+++. .+++++.+|..+..+ ..
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 4444454 66778999999999999987777643 7888887 7777666532 468999999876433 24
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
|+|++...++++ .+.+.+.|+|||++++.-.
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 999998766543 3456789999999988543
No 125
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=3e-07 Score=83.71 Aligned_cols=130 Identities=20% Similarity=0.211 Sum_probs=92.2
Q ss_pred eEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC-CCEEEeccc--ccc--
Q 017777 204 SVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK-GDAIFIKWI--CHD-- 271 (366)
Q Consensus 204 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~-~D~i~~~~~--lh~-- 271 (366)
+|||+|||+|..+..++.++|+++++++|+ |.+++.|+++ .++.++.+|.+++.+. .|+|+++-- -..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999998 8888777653 4566777788886553 499988521 111
Q ss_pred -C-C-----------------hHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCC
Q 017777 272 -W-S-----------------DEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERT 332 (366)
Q Consensus 272 -~-~-----------------~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 332 (366)
. + -+-...+++.+.+.|+|||.+++-.. . -.
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g-~-----------------------------~q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG-L-----------------------------TQ 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC-C-----------------------------Cc
Confidence 0 0 01246788899999999887776211 0 01
Q ss_pred HHHHHHHHHHcC-CceeEEEECC-CceeEEEEE
Q 017777 333 EQEFRALAKAAG-FQGFQVVSSA-FNTYIMEFL 363 (366)
Q Consensus 333 ~~e~~~ll~~aG-f~~~~~~~~~-~~~~vie~~ 363 (366)
.+.+.+++.+.| |..+.+.... +...++.+.
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~ 275 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDLFGRDRVVLAK 275 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecCCCceEEEEEE
Confidence 567889999999 6766666654 333444433
No 126
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=8.3e-08 Score=83.73 Aligned_cols=105 Identities=21% Similarity=0.266 Sum_probs=83.9
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC-CCC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS-VPK 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~-~~~ 259 (366)
..++...+ +.+..+|+|.|.|+|.++..|+.. .|.-+++.+|. ++..+.|+++ +++.+..+|+.+. .++
T Consensus 84 ~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 84 GYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence 35666666 888999999999999999999974 57789999997 7777776653 5699999999873 333
Q ss_pred C-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 260 G-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 260 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
. |+|++ ++|++. ++|.+++++|+|||.+++.-+..+
T Consensus 163 ~vDav~L-----Dmp~PW--~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 163 DVDAVFL-----DLPDPW--NVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred ccCEEEE-----cCCChH--HHHHHHHHHhCCCcEEEEEcCCHH
Confidence 4 99987 566665 779999999999999999876554
No 127
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.70 E-value=5.3e-08 Score=83.85 Aligned_cols=92 Identities=25% Similarity=0.296 Sum_probs=67.1
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEc--cCCC----CC---CCC-CEEEecccccc
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGG--DMFV----SV---PKG-DAIFIKWICHD 271 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~--D~~~----~~---~~~-D~i~~~~~lh~ 271 (366)
..++|||||+|..+..++..+. ++++.|. +.+++.++++++++.... .|.+ ++ ++. |+|++..++|.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 4899999999976666666543 6889997 999999998765544321 1221 11 233 99999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCc-EEEEEcc
Q 017777 272 WSDEHCVKFLKNCYEALPVNG-KVIVAES 299 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG-~lli~e~ 299 (366)
|+-+ .+.+.++++||+.| .+.+...
T Consensus 113 Fdle---~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 113 FDLE---RFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hchH---HHHHHHHHHcCCCCCEEEEEEc
Confidence 8754 78999999998766 6665443
No 128
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.67 E-value=3.4e-07 Score=80.32 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=90.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCCCC-CCCEEEeccccccCChHHHHH
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVP-KGDAIFIKWICHDWSDEHCVK 279 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~-~~D~i~~~~~lh~~~~~~~~~ 279 (366)
+..++||||+|.|..+..++..+.++.++-.. +.|..+.++ .+++++..|-+...+ ..|+|.|.|+|....++ ..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S-~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~~ 169 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEAS-PPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--LT 169 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCC-HHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCH--HH
Confidence 45789999999999999999988874444444 556554443 456666554443333 34999999999665554 58
Q ss_pred HHHHHHHhCCCCcEEEEEcccc--C---CCC--CCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 280 FLKNCYEALPVNGKVIVAESIL--P---VTP--DTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 280 ~L~~~~~~L~pgG~lli~e~~~--~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
+|+.++++|+|+|++++.-... + ..+ ...+.+ .+++ ....-+-..+.+.+.|+.+||++++...
T Consensus 170 LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e----~l~~-----~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSE----LLPV-----KGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred HHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchh----hcCC-----CCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 9999999999999999854321 1 111 111111 1111 0111112234455899999999998877
Q ss_pred CC
Q 017777 353 SA 354 (366)
Q Consensus 353 ~~ 354 (366)
.+
T Consensus 241 ~P 242 (265)
T PF05219_consen 241 LP 242 (265)
T ss_pred cC
Confidence 64
No 129
>PRK03612 spermidine synthase; Provisional
Probab=98.67 E-value=2.1e-07 Score=92.18 Aligned_cols=98 Identities=24% Similarity=0.322 Sum_probs=73.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC-------------CCceEEEccCCC---CCCC-C
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF-------------PGVEHVGGDMFV---SVPK-G 260 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~D~~~---~~~~-~ 260 (366)
+++.+|||||||+|..+..+++ +|. .+++.+|+ +++++.++++ +|++++.+|..+ ..++ .
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4678999999999999999986 455 68999998 8888887761 589999999876 2233 4
Q ss_pred CEEEeccccccCChH---HHHHHHHHHHHhCCCCcEEEEEc
Q 017777 261 DAIFIKWICHDWSDE---HCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 261 D~i~~~~~lh~~~~~---~~~~~L~~~~~~L~pgG~lli~e 298 (366)
|+|++...-...+.. -..++++.+++.|+|||.+++..
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999987433221111 12468999999999999988853
No 130
>PRK01581 speE spermidine synthase; Validated
Probab=98.66 E-value=9.7e-08 Score=88.47 Aligned_cols=99 Identities=19% Similarity=0.091 Sum_probs=73.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------------CCCceEEEccCCC--CC-C-CC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------------FPGVEHVGGDMFV--SV-P-KG 260 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~D~~~--~~-~-~~ 260 (366)
..++.+||+||||+|..+..+++..+..+++.+|+ +.+++.|++ .+|++++.+|..+ .. + ..
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 34678999999999999988887655568999998 888887774 2689999999876 22 2 24
Q ss_pred CEEEeccccc---cCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 261 DAIFIKWICH---DWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 261 D~i~~~~~lh---~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
|+|++...-. ....-....+++.+++.|+|||.+++.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999863210 011122357899999999999999886
No 131
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.65 E-value=1.3e-06 Score=78.29 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=79.2
Q ss_pred CCCeEEEEeCCccH----HHHHHHHhCC-----CCeEEEecc-hhHHhhCCCC---------------------------
Q 017777 201 GLNSVVDVGGGIGA----TLNMIISKYP-----SIKGINFDL-PHVIQDAPAF--------------------------- 243 (366)
Q Consensus 201 ~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--------------------------- 243 (366)
+..+|.-+||++|. +++.+.+.+| .+++++.|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 57899999999996 4455566665 467888887 7777766541
Q ss_pred --------CCceEEEccCCC-C-CCCC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 244 --------PGVEHVGGDMFV-S-VPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 244 --------~~v~~~~~D~~~-~-~~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
..|.|..+|.++ + .+.. |+|+|.|||-+|+.+...+++++.+..|+|||+|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 248999999988 3 4444 99999999999998888899999999999999999954
No 132
>PLN02366 spermidine synthase
Probab=98.63 E-value=1.6e-07 Score=86.41 Aligned_cols=97 Identities=26% Similarity=0.236 Sum_probs=71.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC----------CCceEEEccCCC---CCC--CCCE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF----------PGVEHVGGDMFV---SVP--KGDA 262 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~---~~~--~~D~ 262 (366)
+++.+||+||||.|..+..+++. |. .+++.+|+ +.+++.++++ +|++++.+|... ..+ ..|+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 46789999999999999999865 54 46888887 7777776542 589999999754 232 3499
Q ss_pred EEeccccccCChH--HHHHHHHHHHHhCCCCcEEEEE
Q 017777 263 IFIKWICHDWSDE--HCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 263 i~~~~~lh~~~~~--~~~~~L~~~~~~L~pgG~lli~ 297 (366)
|++-..-+..+.. -...+++.+++.|+|||.+++.
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9985433222221 1357899999999999998764
No 133
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.63 E-value=1.5e-07 Score=87.12 Aligned_cols=99 Identities=21% Similarity=0.278 Sum_probs=72.8
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCC------CCCceEEEccCCCCCC---C
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPA------FPGVEHVGGDMFVSVP---K 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~~---~ 259 (366)
.+++.++ ..+..+|||||||+|.++..+++..+. ..++++|. +.+++.+++ .+++.++.+|..+..+ .
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 4555554 566789999999999999999988763 46889997 777766553 2578899999766322 2
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.|+|++...+++. ...+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 4999987665442 234667899999988854
No 134
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.2e-07 Score=78.32 Aligned_cols=100 Identities=14% Similarity=0.267 Sum_probs=76.6
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCCCCCC--
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFVSVPK-- 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~~~-- 259 (366)
...++..+. +++..+|||||||+|..+.-|++... +++.+++ ++..+.|++ +.+|.++++|-..-+++
T Consensus 61 vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 61 VARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 345666666 78889999999999999998888665 7888886 776776665 26799999999885443
Q ss_pred -CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 -GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+|.|+..-..-..|+ .+.+-|+|||++++..-
T Consensus 138 PyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 499998777655543 24558999999999665
No 135
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.60 E-value=1.3e-07 Score=85.91 Aligned_cols=98 Identities=21% Similarity=0.214 Sum_probs=72.2
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC--C-CC-CCCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV--S-VP-KGDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~-~~-~~D~i~ 264 (366)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ .++++++.+|.++ . .+ ..|+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 4567999999999999999988765667888887 777766554 2578888888765 1 12 349999
Q ss_pred eccccccCChHH--HHHHHHHHHHhCCCCcEEEEE
Q 017777 265 IKWICHDWSDEH--CVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 265 ~~~~lh~~~~~~--~~~~L~~~~~~L~pgG~lli~ 297 (366)
+......-+... ...+++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 865532222222 358899999999999999986
No 136
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.59 E-value=1.2e-07 Score=80.36 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=72.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCC--CCCCC--CEEEecccccc---
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFV--SVPKG--DAIFIKWICHD--- 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~--~~~~~--D~i~~~~~lh~--- 271 (366)
...-|||||||+|..+..|.. ++...+++|+ |.|++.+.+. -.-.++.+|+-+ |++.+ |.+++...+.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSD--SGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CCcEEEEeccCCCcchheecc--CCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecc
Confidence 378899999999999988877 6688999998 9999988752 124577888877 56555 88776555432
Q ss_pred ------CChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 272 ------WSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 272 ------~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
.|......++..++..|++|++-++.
T Consensus 128 A~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 128 ADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred cCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 23344567899999999999998874
No 137
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.58 E-value=5.3e-07 Score=80.06 Aligned_cols=98 Identities=14% Similarity=0.230 Sum_probs=74.6
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC------C---CCC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS------V---PKG 260 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~------~---~~~ 260 (366)
..+..+|||||||+|..+..++...+ +.+++.+|. ++.++.++++ ++++++.+|..+. . +..
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 44678999999999999999988765 678999997 7777766542 5799999998752 1 134
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
|+|++- -..+....++..+.+.|+|||.+++-+...
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 999873 223455688999999999999877755443
No 138
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.57 E-value=2.3e-07 Score=78.23 Aligned_cols=103 Identities=16% Similarity=0.247 Sum_probs=68.8
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCC--CC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPK--GD 261 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~--~D 261 (366)
..+++.++ +.+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+. .|
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 35566665 667789999999999999999987 457888887 666665543 3589999999987 5554 38
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.|+.+- .++...+....+++.. .+.++|.+++..
T Consensus 80 ~vi~n~-Py~~~~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 80 KVVGNL-PYNISTPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred EEEECC-CcccHHHHHHHHHhcC--CCcceEEEEEEH
Confidence 777654 4444433333333321 133666666644
No 139
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.53 E-value=1.6e-07 Score=80.94 Aligned_cols=95 Identities=24% Similarity=0.442 Sum_probs=66.3
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC------CCCCceEEEccCCC----CCCCC--CEEEecccc
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP------AFPGVEHVGGDMFV----SVPKG--DAIFIKWIC 269 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~D~~~----~~~~~--D~i~~~~~l 269 (366)
..+||||||.|.++..++..+|+..++|+|. ...+..+. ...++.++++|... -++++ |-|++.+-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP- 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP- 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-
Confidence 4899999999999999999999999999997 44444332 24899999999876 13323 55544211
Q ss_pred ccCChH-H------HHHHHHHHHHhCCCCcEEEEEc
Q 017777 270 HDWSDE-H------CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 270 h~~~~~-~------~~~~L~~~~~~L~pgG~lli~e 298 (366)
.-|+.. + ...+|+.+.+.|+|||.|.+..
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 112211 1 2589999999999999998865
No 140
>PHA03412 putative methyltransferase; Provisional
Probab=98.52 E-value=5.3e-07 Score=78.73 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=70.8
Q ss_pred CCeEEEEeCCccHHHHHHHHhC---CCCeEEEecc-hhHHhhCCCC-CCceEEEccCCC-CCCC-CCEEEeccccccCCh
Q 017777 202 LNSVVDVGGGIGATLNMIISKY---PSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFV-SVPK-GDAIFIKWICHDWSD 274 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~-~D~i~~~~~lh~~~~ 274 (366)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.+++. .++.++..|+.. +... .|+|+++--++....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999998875 3568999998 8888888754 679999999976 4433 499999866653321
Q ss_pred ----------HHHHHHHHHHHHhCCCCcEEEE
Q 017777 275 ----------EHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 275 ----------~~~~~~L~~~~~~L~pgG~lli 296 (366)
.-...+++++.++++||+. |+
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 1134688999997776664 44
No 141
>PLN02672 methionine S-methyltransferase
Probab=98.51 E-value=1.1e-06 Score=92.27 Aligned_cols=122 Identities=20% Similarity=0.147 Sum_probs=86.9
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----------------------CCceEEEccCCCCCC
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----------------------PGVEHVGGDMFVSVP 258 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------~~v~~~~~D~~~~~~ 258 (366)
..+|||+|||+|..+..+++.+|..+++++|+ +.+++.++++ +|++++++|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 36899999999999999999999889999998 7777666321 369999999988543
Q ss_pred ----CCCEEEeccc--cc----cCC--------------------------hH----HHHHHHHHHHHhCCCCcEEEEEc
Q 017777 259 ----KGDAIFIKWI--CH----DWS--------------------------DE----HCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 259 ----~~D~i~~~~~--lh----~~~--------------------------~~----~~~~~L~~~~~~L~pgG~lli~e 298 (366)
..|+|+++-- .. .++ ++ -.+.++..+.+.|+|||.+++ |
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-E 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-N 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-E
Confidence 2388887522 10 000 01 125778888889999998775 3
Q ss_pred cccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH-HHHHHcCCceeEEEEC
Q 017777 299 SILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR-ALAKAAGFQGFQVVSS 353 (366)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~-~ll~~aGf~~~~~~~~ 353 (366)
.-. ...+.+. +++++.||+.++++..
T Consensus 278 iG~-----------------------------~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 278 MGG-----------------------------RPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred ECc-----------------------------cHHHHHHHHHHHHCCCCeeEEeee
Confidence 211 1134566 5888899998877764
No 142
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.51 E-value=3.8e-06 Score=71.90 Aligned_cols=120 Identities=16% Similarity=0.148 Sum_probs=89.6
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCC-CCCC-----CCEEEeccccccCChH
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFV-SVPK-----GDAIFIKWICHDWSDE 275 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~~~-----~D~i~~~~~lh~~~~~ 275 (366)
..++|||||=+...... .++-+.++-+|+... .-.+...||++ |.|. .|+|.++.||.+.|++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~--------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ--------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC--------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999986654332 345567888887431 22345679988 7762 2999999999999866
Q ss_pred -HHHHHHHHHHHhCCCCcE-----EEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 276 -HCVKFLKNCYEALPVNGK-----VIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 276 -~~~~~L~~~~~~L~pgG~-----lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
++-+.|+++.+.|+|+|. |+|+-+.. + . .+.+-.+.+.|.++++..||..++
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~-------------C--------v-~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP-------------C--------V-TNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCch-------------H--------h-hcccccCHHHHHHHHHhCCcEEEE
Confidence 455999999999999999 77764321 1 1 266667889999999999999998
Q ss_pred EEECC
Q 017777 350 VVSSA 354 (366)
Q Consensus 350 ~~~~~ 354 (366)
.+...
T Consensus 179 ~~~~~ 183 (219)
T PF11968_consen 179 YKKSK 183 (219)
T ss_pred EEecC
Confidence 87653
No 143
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.49 E-value=1e-06 Score=85.33 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=77.3
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCC---CC-C-C
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVS---VP-K-G 260 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~---~~-~-~ 260 (366)
+...++ ..++.+|||+|||+|..+..+++..++.+++++|. +.+++.++++ .+++++++|..+. .+ . .
T Consensus 236 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 236 AATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred HHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCC
Confidence 333444 55678999999999999999999988788999998 7777766542 2478899998762 22 2 3
Q ss_pred CEEEecc------cccc-------CChHH-------HHHHHHHHHHhCCCCcEEEEEccc
Q 017777 261 DAIFIKW------ICHD-------WSDEH-------CVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 261 D~i~~~~------~lh~-------~~~~~-------~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
|.|++.- ++.. ...++ ..++|+++.+.|+|||++++....
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9998421 1211 11121 247899999999999999987743
No 144
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.48 E-value=1.7e-07 Score=81.39 Aligned_cols=102 Identities=19% Similarity=0.268 Sum_probs=72.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC-
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK- 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~- 259 (366)
...+++.+. +.+..+|||||||+|..+.-++..... .+++.+|. +...+.+++. .+|.++++|.....+.
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 446777776 888899999999999999988887643 46788886 7777777642 5899999998774442
Q ss_pred --CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 --GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 --~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+|.|++.......|. .+.+.|++||+|++.-.
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEEc
Confidence 399999887765432 25557899999999543
No 145
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.46 E-value=6.5e-07 Score=79.44 Aligned_cols=126 Identities=17% Similarity=0.240 Sum_probs=88.1
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCC--
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVP-- 258 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~-- 258 (366)
.++-.++ +.++.+|||.|.|+|.++..|+.. .|.-+++.+|. ++..+.|+++ +++++...|+.+ .++
T Consensus 31 ~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 31 YILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 4555565 888999999999999999999975 47889999997 6666665542 579999999964 342
Q ss_pred --CC-CEEEeccccccCChHHHHHHHHHHHHhC-CCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHH
Q 017777 259 --KG-DAIFIKWICHDWSDEHCVKFLKNCYEAL-PVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQ 334 (366)
Q Consensus 259 --~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L-~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 334 (366)
.. |.|++ ++|++. ..+..+.++| +|||++.+.-+..++ ..
T Consensus 110 ~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ieQ-----------------------------v~ 153 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCIEQ-----------------------------VQ 153 (247)
T ss_dssp -TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSHHH-----------------------------HH
T ss_pred ccCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCHHH-----------------------------HH
Confidence 22 98887 556664 6699999999 899999997654322 12
Q ss_pred HHHHHHHHcCCceeEEEEC
Q 017777 335 EFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 335 e~~~ll~~aGf~~~~~~~~ 353 (366)
...+.|++.||..+++..+
T Consensus 154 ~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 154 KTVEALREHGFTDIETVEV 172 (247)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHCCCeeeEEEEE
Confidence 3346678889988877664
No 146
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.45 E-value=9.9e-07 Score=85.50 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=78.0
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------C-CceEEEccCCC-CC--C-C
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------P-GVEHVGGDMFV-SV--P-K 259 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~-~~--~-~ 259 (366)
+...++ ..++.+|||+|||+|..+..+++..++.+++++|. +++++.++++ . ++.+..+|... +. + .
T Consensus 230 ~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~ 308 (426)
T TIGR00563 230 VATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308 (426)
T ss_pred HHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence 344444 55678999999999999999999888778999997 7777665432 1 23336667654 22 2 2
Q ss_pred -CCEEEe------ccccccCChH-------H-------HHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 260 -GDAIFI------KWICHDWSDE-------H-------CVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 260 -~D~i~~------~~~lh~~~~~-------~-------~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
.|.|++ ..+++..|+- + ..++|+.+.+.|||||+|+..+-...
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 399985 2456654431 1 25899999999999999999876553
No 147
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.45 E-value=1.1e-06 Score=85.64 Aligned_cols=106 Identities=15% Similarity=0.158 Sum_probs=75.6
Q ss_pred HhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCC---CCC-CC
Q 017777 194 ENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVS---VPK-GD 261 (366)
Q Consensus 194 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~~~-~D 261 (366)
..+. ..+..+|||+|||+|..+..+++.. ++.+++++|+ +.+++.++++ .+++++.+|+.+. ++. .|
T Consensus 244 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 244 PALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCC
Confidence 3443 5567899999999999999999886 6678999998 7776665432 4589999998762 333 49
Q ss_pred EEEecc------ccccCC-------hHH-------HHHHHHHHHHhCCCCcEEEEEccc
Q 017777 262 AIFIKW------ICHDWS-------DEH-------CVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 262 ~i~~~~------~lh~~~-------~~~-------~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
+|++.- ++.+.| ..+ ...+|+.+.+.|||||+|+.....
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 998732 121111 111 246899999999999999976543
No 148
>PLN02476 O-methyltransferase
Probab=98.40 E-value=4.9e-06 Score=75.05 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=75.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC---C------CCC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS---V------PKG 260 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~------~~~ 260 (366)
..+..+|||||+++|..+..++...| +.+++.+|. ++..+.|+++ ++|+++.+|..+. . +..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45689999999999999999998875 557888887 7666666542 6899999998651 1 123
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
|+|++- -+..+...+++.+.+.|+|||.|++-+....
T Consensus 196 D~VFID-----a~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 196 DFAFVD-----ADKRMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 988863 2345667899999999999999888655443
No 149
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.39 E-value=1.9e-06 Score=83.68 Aligned_cols=107 Identities=14% Similarity=0.076 Sum_probs=77.6
Q ss_pred HhccCCCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-C----CCC-
Q 017777 194 ENYKGFEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-S----VPK- 259 (366)
Q Consensus 194 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~----~~~- 259 (366)
..+. ..++.+|||+|||+|..+..+++... ..+++++|. +.+++.++++ .+|+++++|..+ + ...
T Consensus 246 ~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 246 PLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred HHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccc
Confidence 3344 55678999999999999999998764 458999997 7777665432 468999999875 3 212
Q ss_pred -CCEEEec------cccccCCh-------HH-------HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 260 -GDAIFIK------WICHDWSD-------EH-------CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 260 -~D~i~~~------~~lh~~~~-------~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.|.|++. .+++..++ ++ ..++|+++.+.|||||+|+..+-..
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3999862 35554443 11 2588999999999999999876443
No 150
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.39 E-value=2.2e-06 Score=83.60 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=74.2
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC-C-CCEEEec--
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP-K-GDAIFIK-- 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~-~D~i~~~-- 266 (366)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .+|+++++|..+..+ . .|+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44568999999999999988887654 458999998 7777666542 468899999876223 2 3999861
Q ss_pred ----cccc-------cCChHH-------HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 267 ----WICH-------DWSDEH-------CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 267 ----~~lh-------~~~~~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.++. .++.++ ...+|+++.+.|+|||+|+......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1221 222222 2368999999999999999987554
No 151
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.38 E-value=4.3e-07 Score=84.40 Aligned_cols=98 Identities=23% Similarity=0.266 Sum_probs=68.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----------------CCceEEEccCCCC-----CC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----------------PGVEHVGGDMFVS-----VP 258 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------~~v~~~~~D~~~~-----~~ 258 (366)
+..+|||+|||-|+-+..-..... ..++++|+ +..++.|++. -...++.+|.+.. ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 678999999998886666665433 26899997 5556555321 1245677877641 22
Q ss_pred -C--C-CEEEeccccccC--ChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 259 -K--G-DAIFIKWICHDW--SDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 259 -~--~-D~i~~~~~lh~~--~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. . |+|-+.+.||+. +.+.+..+|+++.+.|+|||++|..-+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 2 2 999999999985 555677899999999999999998654
No 152
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.29 E-value=3e-06 Score=74.36 Aligned_cols=95 Identities=24% Similarity=0.418 Sum_probs=68.4
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhC----CC--CCCceEEEccCCC---C-CCCC--CEEEecccc
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDA----PA--FPGVEHVGGDMFV---S-VPKG--DAIFIKWIC 269 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~--~~~v~~~~~D~~~---~-~~~~--D~i~~~~~l 269 (366)
..+||||||.|.++..+++.+|+..++|+++ ...+..+ .+ .+++.++++|... . .+.+ |-|++++-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP- 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP- 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-
Confidence 5899999999999999999999999999996 4443332 22 2489999999765 2 3342 55554321
Q ss_pred ccCChH-H------HHHHHHHHHHhCCCCcEEEEEc
Q 017777 270 HDWSDE-H------CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 270 h~~~~~-~------~~~~L~~~~~~L~pgG~lli~e 298 (366)
.-|+.. + ...+|+.+.+.|+|||.|.+..
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 122211 1 2479999999999999999865
No 153
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.28 E-value=4.8e-06 Score=80.62 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=74.8
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-C-C-CC-CCEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-S-V-PK-GDAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~-~-~~-~D~i~~~ 266 (366)
..++.+|||+|||+|..+..++... ++.+++.+|+ +.+++.++++ .+++++.+|... + . +. .|.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5567899999999999999999876 4568999998 7777666542 457889999865 2 2 22 3999861
Q ss_pred ------ccccc-------CChH-------HHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 267 ------WICHD-------WSDE-------HCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 267 ------~~lh~-------~~~~-------~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
.++.. ++.+ ...++|.++.+.|||||+|+...-...
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 22322 1211 125789999999999999888765543
No 154
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.26 E-value=6.1e-06 Score=74.76 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=72.8
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CC--CCCCEEEec-
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SV--PKGDAIFIK- 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~--~~~D~i~~~- 266 (366)
..++.+|||+|||+|..+..+++... ...++++|+ +..++.++++ .+++++..|... +. +..|+|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45668999999999999999988774 357899997 7776655432 468888888654 22 234999862
Q ss_pred -----cccc-------cCChHH-------HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 267 -----WICH-------DWSDEH-------CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 267 -----~~lh-------~~~~~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.++. .|..++ ..++|+.+.+.|||||+|+...-..
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1222 122222 2469999999999999998876544
No 155
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.26 E-value=3.8e-06 Score=72.84 Aligned_cols=99 Identities=16% Similarity=0.242 Sum_probs=78.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEE-ccCCC--C-C--CCCCEE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVG-GDMFV--S-V--PKGDAI 263 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~-~D~~~--~-~--~~~D~i 263 (366)
..+..+||+||.+.|..+..++...| +.+++.+|. ++..+.|+++ ++|+.+. +|..+ . . +..|+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56789999999999999999999999 888999998 8888877763 5688887 57665 2 1 233999
Q ss_pred EeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 264 FIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 264 ~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
|+- ....+...+|..+.+.|+|||.+++-+...+
T Consensus 137 FID-----adK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 137 FID-----ADKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEe-----CChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 863 2344567899999999999999988666554
No 156
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.24 E-value=2.8e-06 Score=73.48 Aligned_cols=111 Identities=19% Similarity=0.310 Sum_probs=67.7
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC---------------CCCceEEEccC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA---------------FPGVEHVGGDM 253 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~D~ 253 (366)
..+++.+. +.+...++|||||.|......+..++--+.+|+++ +...+.++. ..++++..+|+
T Consensus 32 ~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 32 SKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 34566665 77788999999999999888777665444888886 444333221 25688899999
Q ss_pred CC-CC-----CCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCC
Q 017777 254 FV-SV-----PKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVT 304 (366)
Q Consensus 254 ~~-~~-----~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 304 (366)
.+ +. .++|+|++++... + ++...-|.+....||||.+++-.....+..
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred cccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 87 32 3469999998864 3 455666788888999999998877666554
No 157
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.23 E-value=8.1e-06 Score=75.35 Aligned_cols=144 Identities=16% Similarity=0.136 Sum_probs=89.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEE----ccCCCCC--CC--CCEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVG----GDMFVSV--PK--GDAI 263 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~----~D~~~~~--~~--~D~i 263 (366)
...++||||||+|.....++.+.++.+++++|+ +.+++.|++. .+|++.. .+++... +. .|+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 467999999999988888888889999999998 7777776542 3566653 2333322 22 3999
Q ss_pred EeccccccCChHH---HHHHHHHHH----------------HhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhh
Q 017777 264 FIKWICHDWSDEH---CVKFLKNCY----------------EALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAH 324 (366)
Q Consensus 264 ~~~~~lh~~~~~~---~~~~L~~~~----------------~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (366)
+++--+|.-..+. ...-.+++. +.+.+||.+-++..+..+. ..+.... .++..+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS------~~~~~~~-gwftsm 266 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES------KAFAKQV-LWFTSL 266 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH------HHHHhhC-cEEEEE
Confidence 9998887633321 111222222 2334666665555544332 0011111 111111
Q ss_pred CCCCccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 325 NPGGKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 325 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
-++.-+...+.+.|++.|.+.+.+...
T Consensus 267 --v~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 267 --VSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred --eeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 255568999999999999987777665
No 158
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.20 E-value=3.1e-06 Score=71.57 Aligned_cols=101 Identities=19% Similarity=0.115 Sum_probs=65.1
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC---------CCCceEEEccCCCCC------C-CCCE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA---------FPGVEHVGGDMFVSV------P-KGDA 262 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~~------~-~~D~ 262 (366)
..++.+|||+|||+|..+..++...+..+++.-|.+++++..+. ..++.+...|..++. + ..|+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34578999999999999999888867778888897556553322 256788887764421 2 2399
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
|+.+.++|+ ++....+++.+.++|+|+|.+++....+
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999996 4566799999999999999977776554
No 159
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.19 E-value=9e-06 Score=73.92 Aligned_cols=112 Identities=15% Similarity=0.303 Sum_probs=77.0
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCC-eEEEecc-hhHHhhCCCC----CCceEE--EccCC---CCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSI-KGINFDL-PHVIQDAPAF----PGVEHV--GGDMF---VSV 257 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----~~v~~~--~~D~~---~~~ 257 (366)
+.++...++ --.+.+|||+|+|.|..+-++.+.++.. +++.+|. +.+.+.++.. ...... ..++. .++
T Consensus 22 l~El~~r~p-~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 100 (274)
T PF09243_consen 22 LSELRKRLP-DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF 100 (274)
T ss_pred HHHHHHhCc-CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC
Confidence 444555555 2346799999999999888888888744 4688896 7776655431 111110 11111 133
Q ss_pred CCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 258 PKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 258 ~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
+..|+|+++++|..+++.....+++++-+.+.+ .|+|+|+-.+.
T Consensus 101 ~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 445999999999999887788999999887765 99999975544
No 160
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.19 E-value=7.8e-06 Score=73.63 Aligned_cols=91 Identities=16% Similarity=0.282 Sum_probs=61.6
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCCCC-
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPKGD- 261 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~~D- 261 (366)
...+++.++ ..+..+|||||||+|.++..++++.+. ++++|. +.+++.+++ .++++++.+|+.+ +++..|
T Consensus 18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 445666665 667789999999999999999998865 777775 666655543 3689999999987 555334
Q ss_pred -EEEeccccccCChHHHHHHHHHHHH
Q 017777 262 -AIFIKWICHDWSDEHCVKFLKNCYE 286 (366)
Q Consensus 262 -~i~~~~~lh~~~~~~~~~~L~~~~~ 286 (366)
.+++++.-++++. .++.++..
T Consensus 95 ~~~vvsNlPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 95 QLKVVSNLPYNISS----PLIFKLLE 116 (253)
T ss_pred cceEEEcCChhhHH----HHHHHHhc
Confidence 3444444444443 44444443
No 161
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.18 E-value=1.6e-06 Score=75.15 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=74.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--C-----C--CCCC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--S-----V--PKGD 261 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-----~--~~~D 261 (366)
.++.+||+||+++|..+..+++..| +.+++.+|. ++..+.|++. ++|+++.+|..+ + . ...|
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 4679999999999999999999987 578999997 7676666542 689999999865 1 1 1239
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
+|++-. ...+....+..+.+.|+|||.|++-+...
T Consensus 124 ~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 124 FVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred EEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 998743 23456788999999999999999876654
No 162
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.16 E-value=1e-05 Score=73.01 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=60.4
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCCCCE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPKGDA 262 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~~D~ 262 (366)
...+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++++|+.+ +++..|.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 445666555 5667899999999999999999984 47888887 666665543 3679999999987 6665587
Q ss_pred EEeccccccCCh
Q 017777 263 IFIKWICHDWSD 274 (366)
Q Consensus 263 i~~~~~lh~~~~ 274 (366)
|+++-- |+.+.
T Consensus 95 Vv~NlP-y~i~s 105 (258)
T PRK14896 95 VVSNLP-YQISS 105 (258)
T ss_pred EEEcCC-cccCc
Confidence 776544 44443
No 163
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.16 E-value=4.9e-06 Score=74.94 Aligned_cols=94 Identities=19% Similarity=0.168 Sum_probs=68.9
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceEEEccCCC-CCCCC-CEEEeccccccC
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGDMFV-SVPKG-DAIFIKWICHDW 272 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~~lh~~ 272 (366)
.+.|||||||+|.++...+++.. .++..++..+|.+.|++. +||.++.|.+.+ +.|+. |+|+.--.=+.+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML 256 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCc-ceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence 57899999999999987777543 378888888887777642 799999999998 88876 999875333322
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
-.+...+---..++.|+|.|.++=
T Consensus 257 ~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhHHHHHHHHHHHhhcCCCCcccC
Confidence 233333333346799999998753
No 164
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.16 E-value=2.7e-05 Score=63.48 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=87.3
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhh-CCCCCCceEEEccCCC-C-----CC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQD-APAFPGVEHVGGDMFV-S-----VP 258 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~-a~~~~~v~~~~~D~~~-~-----~~ 258 (366)
.++.+...++ +..+.-||++|.|+|.++.+++.+. +.-..+.++. ++.... -+.++.++++.+|.+. . ++
T Consensus 36 lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 36 LARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred HHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcC
Confidence 3455666666 7788899999999999999988864 4555666664 544443 3456889999999886 2 22
Q ss_pred --CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 259 --KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 259 --~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
..|.|++.--+-++|.....++|+.+...|++||.++.....
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 239999998888889888899999999999999999987764
No 165
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.16 E-value=7.4e-06 Score=74.55 Aligned_cols=81 Identities=12% Similarity=0.184 Sum_probs=58.9
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CCceEEEccCCC-CCCCC--CE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PGVEHVGGDMFV-SVPKG--DA 262 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~ 262 (366)
..+++.+. .....+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |.
T Consensus 32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 108 (272)
T PRK00274 32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLK 108 (272)
T ss_pred HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcce
Confidence 45565555 56678999999999999999999876 6788887 7777776543 689999999987 55432 55
Q ss_pred EEeccccccCCh
Q 017777 263 IFIKWICHDWSD 274 (366)
Q Consensus 263 i~~~~~lh~~~~ 274 (366)
|+. +.-++.+.
T Consensus 109 vv~-NlPY~iss 119 (272)
T PRK00274 109 VVA-NLPYNITT 119 (272)
T ss_pred EEE-eCCccchH
Confidence 554 44455443
No 166
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.14 E-value=3.7e-06 Score=81.32 Aligned_cols=126 Identities=18% Similarity=0.212 Sum_probs=76.1
Q ss_pred chhhcccCchHHHHHHHHhhhcchhhHHHHHHhccCC---CCCCeEEEEeCCccHHHHHHHHhC----CCCeEEEecc-h
Q 017777 163 AFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGF---EGLNSVVDVGGGIGATLNMIISKY----PSIKGINFDL-P 234 (366)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~---~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~ 234 (366)
.|+.+++|+-....|.+++.. .+.+..... .+...|+|||||+|-++...+++. ...+++.++- +
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~ 224 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP 224 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred cHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence 466677887777777776532 233322211 135789999999999988776654 3568888885 4
Q ss_pred hHHhhC----CC---CCCceEEEccCCC-CCCCC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEE
Q 017777 235 HVIQDA----PA---FPGVEHVGGDMFV-SVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVI 295 (366)
Q Consensus 235 ~~~~~a----~~---~~~v~~~~~D~~~-~~~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~ll 295 (366)
.++... ++ .++|+++.+|+.+ ..|+. |+|++-..=.....+-....|....+.|||||.++
T Consensus 225 ~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 225 NAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 333221 11 2789999999998 66655 99987432211112233456888889999997654
No 167
>PLN02823 spermine synthase
Probab=98.12 E-value=8.2e-06 Score=76.00 Aligned_cols=97 Identities=18% Similarity=0.113 Sum_probs=70.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC--CC-C-CCCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV--SV-P-KGDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~-~-~~D~i~ 264 (366)
.++.+||.||+|.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|.+. .. + ..|+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3568999999999999999988666667888888 888887764 2689999999876 22 2 249999
Q ss_pred eccccccC---ChH--HHHHHHH-HHHHhCCCCcEEEEE
Q 017777 265 IKWICHDW---SDE--HCVKFLK-NCYEALPVNGKVIVA 297 (366)
Q Consensus 265 ~~~~lh~~---~~~--~~~~~L~-~~~~~L~pgG~lli~ 297 (366)
+-.. ..+ +.. -..++++ .+++.|+|||.+++.
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 7521 111 000 0246787 899999999998764
No 168
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.12 E-value=2.2e-05 Score=76.58 Aligned_cols=100 Identities=12% Similarity=0.061 Sum_probs=68.7
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCC-----
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVS----- 256 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~----- 256 (366)
...+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ .+++++++|+.+.
T Consensus 286 ~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 286 VARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 344455444 4556899999999999999999875 57899997 8888776642 4799999998652
Q ss_pred CCC--CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 257 VPK--GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 257 ~~~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
++. .|+|++.--- .....+++.+.+ ++|++.+++.
T Consensus 363 ~~~~~fD~Vi~dPPr-----~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 363 WALGGFDKVLLDPPR-----AGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hhcCCCCEEEECcCC-----cChHHHHHHHHh-cCCCeEEEEE
Confidence 222 3998874222 112344555555 6888877774
No 169
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.11 E-value=1.1e-05 Score=69.64 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=63.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCC--C--CCCEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSV--P--KGDAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~--~--~~D~i~~~~~l 269 (366)
...+|||+|||+|.++..++.+.. .+++++|. +.+++.++++ .+++++++|+++.. . ..|+|++.--+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457999999999999997666553 58899987 6666655432 47899999987622 2 24999987664
Q ss_pred ccCChHHHHHHHHHHHH--hCCCCcEEEEEc
Q 017777 270 HDWSDEHCVKFLKNCYE--ALPVNGKVIVAE 298 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~--~L~pgG~lli~e 298 (366)
+. . -...+++.+.. +|+|++.+++-.
T Consensus 132 ~~-g--~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 132 RK-G--LLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CC-C--hHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 32 1 12344555554 378887666643
No 170
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.09 E-value=1.1e-05 Score=72.53 Aligned_cols=104 Identities=22% Similarity=0.289 Sum_probs=74.0
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhH-HhhCCCC--------C----CceEEEccCCC--
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHV-IQDAPAF--------P----GVEHVGGDMFV-- 255 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~-~~~a~~~--------~----~v~~~~~D~~~-- 255 (366)
.++..+. ++...++|+|||-|+-+..--++.-+ .++++|++++ ++.+++. . .+.|+++|-+.
T Consensus 109 ~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kAgI~-~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~ 185 (389)
T KOG1975|consen 109 VLINLYT--KRGDDVLDLGCGKGGDLLKWDKAGIG-EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER 185 (389)
T ss_pred HHHHHHh--ccccccceeccCCcccHhHhhhhccc-ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence 3455553 56678999999999877665553222 5799998444 6666532 1 36788888654
Q ss_pred -----CC--CCCCEEEecccccc-C-ChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 256 -----SV--PKGDAIFIKWICHD-W-SDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 256 -----~~--~~~D~i~~~~~lh~-~-~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
+. |..|+|-|.+++|+ | +.+.++.+|+++.+.|+|||++|-.
T Consensus 186 l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 186 LMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred HHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 11 22499999999997 4 4456789999999999999999864
No 171
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=9.1e-05 Score=61.32 Aligned_cols=134 Identities=15% Similarity=0.211 Sum_probs=86.4
Q ss_pred CCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCC----C-CCceEEEccCCCCC-CCC-CEEEeccccccC
Q 017777 202 LNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPA----F-PGVEHVGGDMFVSV-PKG-DAIFIKWICHDW 272 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~-~~v~~~~~D~~~~~-~~~-D~i~~~~~lh~~ 272 (366)
+.-++|||||+|..+..|++.. |+......|+ |++++...+ + -++..+..|+.+.. ++. |+++++--.---
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 6789999999999999888875 6777788898 777765332 1 45778888988733 233 888876433221
Q ss_pred ChHH-------------------HHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCH
Q 017777 273 SDEH-------------------CVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTE 333 (366)
Q Consensus 273 ~~~~-------------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 333 (366)
++++ ..++|..+-..|.|.|.+++.-...+ .+
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N-----------------------------~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN-----------------------------KP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc-----------------------------CH
Confidence 2211 23555556666677777766433211 25
Q ss_pred HHHHHHHHHcCCceeEEEEC---CCceeEEEEEe
Q 017777 334 QEFRALAKAAGFQGFQVVSS---AFNTYIMEFLK 364 (366)
Q Consensus 334 ~e~~~ll~~aGf~~~~~~~~---~~~~~vie~~k 364 (366)
+|+..++++-||.......- +...+++.+.|
T Consensus 175 ~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~r 208 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAMQRKAGGETLSILKFTR 208 (209)
T ss_pred HHHHHHHhhcccceeEEEEEecCCceEEEEEEEe
Confidence 67778889999986554432 24556666554
No 172
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.06 E-value=8.5e-06 Score=72.26 Aligned_cols=94 Identities=22% Similarity=0.197 Sum_probs=73.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCC--CEEEeccccccCChHH
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEH 276 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~ 276 (366)
....++|+|||.|.++. .+|.+-.++.|+ ...+.-+++.........|+.. |+++. |.++...++|||....
T Consensus 45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred CcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 47889999999998764 238888999998 5555555554444677788887 66643 9999999999997654
Q ss_pred -HHHHHHHHHHhCCCCcEEEEEc
Q 017777 277 -CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 277 -~~~~L~~~~~~L~pgG~lli~e 298 (366)
...+++++.+.++|||..+|.-
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEEE
Confidence 4599999999999999977744
No 173
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.04 E-value=3.7e-05 Score=67.69 Aligned_cols=99 Identities=19% Similarity=0.233 Sum_probs=68.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEc----cCCCCCC--CC--CE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGG----DMFVSVP--KG--DA 262 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~----D~~~~~~--~~--D~ 262 (366)
+.....|||+|||+|..+..+++..|+++++.+|. +.++..+.++ +++.++.. |.+.+.+ .+ |+
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence 44566899999999999999999999999999997 6666555442 67777744 4444333 33 88
Q ss_pred EEec--ccccc-C---------------------ChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 263 IFIK--WICHD-W---------------------SDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 263 i~~~--~~lh~-~---------------------~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
++++ ++.+. + .-+....++.-+.+.|+|||.+.+-
T Consensus 226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 8775 22221 0 0012356777788999998888774
No 174
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.04 E-value=1.7e-05 Score=71.88 Aligned_cols=97 Identities=25% Similarity=0.353 Sum_probs=76.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----------CCceEEEccCCC---CCCC-CCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----------PGVEHVGGDMFV---SVPK-GDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~---~~~~-~D~i~ 264 (366)
+++++||-||+|.|..+..+++..+--+++.+|+ +.+++.++++ +|++++..|..+ ..+. .|+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 4457999999999999999999887778999998 9999888763 789999999876 3443 49998
Q ss_pred eccccccCCh-H--HHHHHHHHHHHhCCCCcEEEEE
Q 017777 265 IKWICHDWSD-E--HCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 265 ~~~~lh~~~~-~--~~~~~L~~~~~~L~pgG~lli~ 297 (366)
+-..=.. .. + --..+++.++++|+|+|.++..
T Consensus 155 ~D~tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDPV-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EcCCCCC-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 8544321 11 0 0248999999999999999987
No 175
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.01 E-value=2.5e-05 Score=71.55 Aligned_cols=89 Identities=20% Similarity=0.326 Sum_probs=63.5
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC-CCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~~~ 259 (366)
...+++... .....+|||||||+|.++..+++... +++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 25 LDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 445666555 66778999999999999999998753 5777776 666665543 3679999999987 5555
Q ss_pred CCEEEeccccccCChHHHHHHH
Q 017777 260 GDAIFIKWICHDWSDEHCVKFL 281 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L 281 (366)
.|+|+. +.-++++.+....+|
T Consensus 102 ~d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEe-cCCcccCcHHHHHHH
Confidence 587664 555666655544444
No 176
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.01 E-value=0.00015 Score=63.87 Aligned_cols=146 Identities=15% Similarity=0.106 Sum_probs=82.2
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHh-hCCCCCCceE-EEccCCC----CCC--
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQ-DAPAFPGVEH-VGGDMFV----SVP-- 258 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~~v~~-~~~D~~~----~~~-- 258 (366)
.+..+++.++......++||+|||+|.++..+++. +-.+++++|. +.++. ..++.+++.. ...|+.. +.+
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d 140 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPD 140 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCC
Confidence 35566666652235678999999999999999986 3457999998 43444 4555566542 3334432 111
Q ss_pred --CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEE-EccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHH
Q 017777 259 --KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIV-AESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQE 335 (366)
Q Consensus 259 --~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 335 (366)
..|+.+++.. .+|..+.++|+| |.+++ +.+-..-.+... ...-...|-. .......+
T Consensus 141 ~~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~--~~~giv~~~~-------~~~~~~~~ 200 (228)
T TIGR00478 141 FATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREKK--NKKGVVRDKE-------AIALALHK 200 (228)
T ss_pred ceeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhc--CcCCeecCHH-------HHHHHHHH
Confidence 1266655433 358889999999 65554 332221111000 0000000100 01123566
Q ss_pred HHHHHHHcCCceeEEEECC
Q 017777 336 FRALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 336 ~~~ll~~aGf~~~~~~~~~ 354 (366)
+...+.+.||++....+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 201 VIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHcCCCeEeeEEECC
Confidence 7778888899988776643
No 177
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.99 E-value=2.1e-05 Score=70.10 Aligned_cols=98 Identities=13% Similarity=0.174 Sum_probs=73.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC--CC--------CC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV--SV--------PK 259 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~--~~--------~~ 259 (366)
..+..+||+||+++|..+..++...| +.+++.+|. ++..+.|++ .++|+++.+|..+ +. ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 34578999999999999999998874 678899987 666666543 2789999998765 21 12
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.|+|++-. ........++.+.+.|+|||.|++-+...
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 39998742 23456788999999999999977744443
No 178
>PRK00536 speE spermidine synthase; Provisional
Probab=97.97 E-value=3.4e-05 Score=69.09 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=67.8
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----------CCceEEEccCCCCC-CCCCEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----------PGVEHVGGDMFVSV-PKGDAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~~~-~~~D~i~~~ 266 (366)
.+++.+||=||||.|..+.++++. |. +++.+|+ +++++.++++ +|++++. .+.+.. ...|+|+.-
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~~~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLDLDIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhhccCCcCCEEEEc
Confidence 457899999999999999999985 54 8888887 8888877762 6777775 222222 234999976
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.. ++ ..+.+.++++|+|||.++..-
T Consensus 147 s~----~~---~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE----PD---IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC----CC---hHHHHHHHHhcCCCcEEEECC
Confidence 43 12 367899999999999998853
No 179
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.95 E-value=4.6e-05 Score=70.37 Aligned_cols=104 Identities=16% Similarity=0.259 Sum_probs=74.9
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC----CCCeEEEecc-hhHHhhC----C--CCCCceE--EEccCCCC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKY----PSIKGINFDL-PHVIQDA----P--AFPGVEH--VGGDMFVS 256 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a----~--~~~~v~~--~~~D~~~~ 256 (366)
..+...++ ....|+|+|||.|.=+..|++.+ ..++++.+|+ .+.++.+ + .++.+.+ +++|+.++
T Consensus 68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 34555443 45689999999998777666665 3467899997 4454433 2 2356665 78888652
Q ss_pred ---CC-----C-CCEE-EeccccccCChHHHHHHHHHHHH-hCCCCcEEEE
Q 017777 257 ---VP-----K-GDAI-FIKWICHDWSDEHCVKFLKNCYE-ALPVNGKVIV 296 (366)
Q Consensus 257 ---~~-----~-~D~i-~~~~~lh~~~~~~~~~~L~~~~~-~L~pgG~lli 296 (366)
.+ . ..++ ++-+++.+++++++..+|+++++ .|+||+.|+|
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 11 1 2555 44579999999999999999999 9999999888
No 180
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.93 E-value=3.8e-05 Score=73.34 Aligned_cols=97 Identities=13% Similarity=0.006 Sum_probs=68.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCCC---C---C-CCCEEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFVS---V---P-KGDAIF 264 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~---~---~-~~D~i~ 264 (366)
+..+|||+|||+|.++...+.. +..+++.+|+ +.+++.++++ .+++++.+|+++. . . ..|+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4689999999999998876643 3448999997 7777766542 2688999998862 1 2 249999
Q ss_pred eccccccCCh-------HHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 265 IKWICHDWSD-------EHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 265 ~~~~lh~~~~-------~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
+.--...-+. .....+++.+.+.|+|||.|+.+.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 8633211111 123456677889999999999865
No 181
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.91 E-value=3e-05 Score=66.38 Aligned_cols=141 Identities=21% Similarity=0.197 Sum_probs=92.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--CCc--eEEEccCCC-CCCCC--CEEEeccccccC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--PGV--EHVGGDMFV-SVPKG--DAIFIKWICHDW 272 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v--~~~~~D~~~-~~~~~--D~i~~~~~lh~~ 272 (366)
.+..++|||||.|.....+....-+ +.+..|. -.|++.++.. +.+ ....+|-.. ++.+. |+|+.+..+|+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~ve-kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVE-KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchh-heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 4568999999999999999886522 5778886 7777777654 443 445666544 66655 999999999986
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccC------CHHHHHHHHHHcCCc
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKER------TEQEFRALAKAAGFQ 346 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------t~~e~~~ll~~aGf~ 346 (366)
++ ...-+.+++.+|||+|.++-.=. ..+. ....-+...+.-+-. .+|... ...++-.+|..|||.
T Consensus 151 Nd--LPg~m~~ck~~lKPDg~Fiasml-ggdT-----LyELR~slqLAelER-~GGiSphiSPf~qvrDiG~LL~rAGF~ 221 (325)
T KOG2940|consen 151 ND--LPGSMIQCKLALKPDGLFIASML-GGDT-----LYELRCSLQLAELER-EGGISPHISPFTQVRDIGNLLTRAGFS 221 (325)
T ss_pred cc--CchHHHHHHHhcCCCccchhHHh-cccc-----HHHHHHHhhHHHHHh-ccCCCCCcChhhhhhhhhhHHhhcCcc
Confidence 54 45778999999999998765322 1111 011112222222211 233222 346788999999998
Q ss_pred eeEEE
Q 017777 347 GFQVV 351 (366)
Q Consensus 347 ~~~~~ 351 (366)
...+.
T Consensus 222 m~tvD 226 (325)
T KOG2940|consen 222 MLTVD 226 (325)
T ss_pred cceec
Confidence 76553
No 182
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.90 E-value=3.2e-05 Score=79.60 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=70.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCCC---CC-CCCEEEecc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFVS---VP-KGDAIFIKW 267 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~---~~-~~D~i~~~~ 267 (366)
++.+|||+|||+|.++..++.. ...+++.+|+ +.+++.++++ .+++++.+|+++. .+ ..|+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4689999999999999999985 3336999998 7777776642 3789999998762 22 349999842
Q ss_pred ccc--------cC-ChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 268 ICH--------DW-SDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 268 ~lh--------~~-~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
--. .+ .......+++.+.+.|+|||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 110 00 0123457889999999999988775
No 183
>PRK04148 hypothetical protein; Provisional
Probab=97.90 E-value=0.00016 Score=57.67 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=69.4
Q ss_pred HHHHhccCCCCCCeEEEEeCCccH-HHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCC---C-CCEEE
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGA-TLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVP---K-GDAIF 264 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~---~-~D~i~ 264 (366)
.+.+.++ -.+..+|||||||.|. ++..|.+ .+.+++++|+ +..++.+++ ..++++..|++++-+ . .|+|.
T Consensus 7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~--~G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKE--SGFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHHhcc-cccCCEEEEEEecCCHHHHHHHHH--CCCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEE
Confidence 4555555 3345789999999996 7777775 4679999998 777777754 368999999998543 2 39988
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
... |.++...-+-++.+.+ |.-++|.....
T Consensus 83 sir-----pp~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 83 SIR-----PPRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred EeC-----CCHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 754 3456666666677654 46666655433
No 184
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.89 E-value=2.7e-05 Score=76.89 Aligned_cols=97 Identities=18% Similarity=0.264 Sum_probs=68.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhh----CC--CCCCceEEEccCCC---CCCCC--CEEEeccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQD----AP--AFPGVEHVGGDMFV---SVPKG--DAIFIKWI 268 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~--~~~~v~~~~~D~~~---~~~~~--D~i~~~~~ 268 (366)
....+||||||.|.++..++..+|+..++++|. ...+.. +. ...++.+++.|+.. .++.+ |.|++.+-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 457899999999999999999999999999996 332222 11 13678888887632 35544 66665322
Q ss_pred cccCChH-------HHHHHHHHHHHhCCCCcEEEEEc
Q 017777 269 CHDWSDE-------HCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 269 lh~~~~~-------~~~~~L~~~~~~L~pgG~lli~e 298 (366)
= -|+.. -...+|+.+.+.|+|||.|.+..
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 1 22211 12489999999999999998864
No 185
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.88 E-value=1.7e-05 Score=75.83 Aligned_cols=98 Identities=18% Similarity=0.290 Sum_probs=67.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEe---cc-hhHHhhCCCCCCceEEEccC---CCCCCCC--CEEEecccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINF---DL-PHVIQDAPAFPGVEHVGGDM---FVSVPKG--DAIFIKWICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~v~~~~~D~---~~~~~~~--D~i~~~~~lh~ 271 (366)
....+||||||+|.++..|+++ ++..+.+ |. +..++.|.+. +|..+-+-+ .-|+|.. |+|.|+.++..
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc-CcchhhhhhccccccCCccchhhhhccccccc
Confidence 4578899999999999999985 3333222 22 2333333322 233222222 1278865 99999999998
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
|...+ ..+|-++.|+|+|||++++..+-..
T Consensus 194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred chhcc-cceeehhhhhhccCceEEecCCccc
Confidence 87665 3689999999999999999776444
No 186
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.86 E-value=2.2e-05 Score=71.79 Aligned_cols=94 Identities=18% Similarity=0.122 Sum_probs=66.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC-------CCCceEEEccCCC-CCC-CC-CEEEeccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA-------FPGVEHVGGDMFV-SVP-KG-DAIFIKWICH 270 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~~-~~-D~i~~~~~lh 270 (366)
+...|||||||+|.++...+++. -.+++++|..++.+.+.+ .+.|+++.+.+.+ ..| +. |+|++-+.=|
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 46899999999999999888776 458899997666655543 1458899998887 666 44 9998855443
Q ss_pred cCChH-HHHHHHHHHHHhCCCCcEEE
Q 017777 271 DWSDE-HCVKFLKNCYEALPVNGKVI 295 (366)
Q Consensus 271 ~~~~~-~~~~~L~~~~~~L~pgG~ll 295 (366)
.+--+ =...+|-.=-++|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 32212 12244555567899999865
No 187
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=4.9e-05 Score=63.58 Aligned_cols=86 Identities=22% Similarity=0.141 Sum_probs=59.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCCCCCEEEeccccccCCh
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVPKGDAIFIKWICHDWSD 274 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~D~i~~~~~lh~~~~ 274 (366)
...+|+|+|||||.++...+-..+. +++++|+ |++++.++++ .++.|++.|+.+.....|.++++--+--+-.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r 123 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR 123 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence 4578999999999999987776554 8889988 8888877754 5799999998764444477777655433211
Q ss_pred HHHHHHHHHHHHh
Q 017777 275 EHCVKFLKNCYEA 287 (366)
Q Consensus 275 ~~~~~~L~~~~~~ 287 (366)
..-..+|.+..+.
T Consensus 124 haDr~Fl~~Ale~ 136 (198)
T COG2263 124 HADRPFLLKALEI 136 (198)
T ss_pred cCCHHHHHHHHHh
Confidence 1113455555544
No 188
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.00022 Score=61.07 Aligned_cols=115 Identities=21% Similarity=0.209 Sum_probs=80.2
Q ss_pred hhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecchhHHhhCCCCCCceEEEccCCCC-C--
Q 017777 182 SSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDLPHVIQDAPAFPGVEHVGGDMFVS-V-- 257 (366)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~-~-- 257 (366)
.+.+.+-+.++.+.+.-+.+..+|+|+|+..|.++..+.+... +.+++++|+.++- ..++|.++++|+..+ .
T Consensus 26 RSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----~~~~V~~iq~d~~~~~~~~ 101 (205)
T COG0293 26 RSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----PIPGVIFLQGDITDEDTLE 101 (205)
T ss_pred cchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----cCCCceEEeeeccCccHHH
Confidence 3444445667888876567889999999999999998888764 4468999985552 246799999999873 1
Q ss_pred ------CC-C-CEEEecccc---ccCC------hHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 258 ------PK-G-DAIFIKWIC---HDWS------DEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 258 ------~~-~-D~i~~~~~l---h~~~------~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
+. . |+|++-..- -++. -.-+..++.-+...|+|||.+++-.+-
T Consensus 102 ~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 102 KLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 22 2 888752221 1111 122456778888899999999997653
No 189
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.81 E-value=7.2e-05 Score=69.61 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=50.0
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-C--CC-CCCEEEec
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-S--VP-KGDAIFIK 266 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~-~~D~i~~~ 266 (366)
.+.+|||+|||+|.++..++. +..+++++|. +.+++.+++. .+++++++|+.+ . .. ..|+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 357999999999999999998 4468999998 8888776542 579999999865 2 11 23998876
No 190
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.80 E-value=0.00094 Score=59.98 Aligned_cols=136 Identities=16% Similarity=0.176 Sum_probs=88.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecch------hHHhhCC---C-----------------------------
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLP------HVIQDAP---A----------------------------- 242 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~------~~~~~a~---~----------------------------- 242 (366)
...+||-=|||.|+++..++...-.+.+.-++.- -++.... .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 4689999999999999999997433333322210 1111100 0
Q ss_pred -------CCCceEEEccCCC--CCC---CC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCch
Q 017777 243 -------FPGVEHVGGDMFV--SVP---KG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSL 309 (366)
Q Consensus 243 -------~~~v~~~~~D~~~--~~~---~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~ 309 (366)
..++....||+.+ +.+ .. |+|+.++.+. +.+...+.|+.|.++|||||..|=.-+..-...
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~---- 209 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKPGGYWINFGPLLYHFE---- 209 (270)
T ss_pred cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhccCCEEEecCCccccCC----
Confidence 0257788899887 222 12 9999887775 356688999999999999996655544432210
Q ss_pred hhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 310 ASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
+.. .......+.+.+|+.++.++.||+++....
T Consensus 210 --------~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 --------PMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred --------CCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000 000124677999999999999999876544
No 191
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.78 E-value=2.3e-05 Score=70.07 Aligned_cols=99 Identities=21% Similarity=0.318 Sum_probs=72.2
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----------CCceEEEccCCC---CCCC--CCEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----------PGVEHVGGDMFV---SVPK--GDAI 263 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~---~~~~--~D~i 263 (366)
+++.+||-||+|.|..+..+++..+-.+++.+|+ |.+++.++++ +|++++.+|... ...+ .|+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4689999999999999999987655667888888 8888877652 689999999765 3334 4999
Q ss_pred EeccccccCChHH--HHHHHHHHHHhCCCCcEEEEEc
Q 017777 264 FIKWICHDWSDEH--CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 264 ~~~~~lh~~~~~~--~~~~L~~~~~~L~pgG~lli~e 298 (366)
+.-..--..+... ...+++.+++.|+|||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8732211111111 2478999999999999999865
No 192
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=5.1e-05 Score=64.29 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=66.8
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC--CCCeEEEecc-hhHHhhCCCC----------------CCceEEEccCCCCCC-
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY--PSIKGINFDL-PHVIQDAPAF----------------PGVEHVGGDMFVSVP- 258 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~----------------~~v~~~~~D~~~~~~- 258 (366)
+.+..+.||||.|+|.++..++... ++...+++|. |+.++.++++ .++.++.+|-..-.+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 4567899999999999998877443 3444488886 8888776542 468889999887332
Q ss_pred --CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 259 --KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 259 --~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
.+|.|.+-- .+.++.+++-+-|+|||+|+|-
T Consensus 160 ~a~YDaIhvGA--------aa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 160 QAPYDAIHVGA--------AASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cCCcceEEEcc--------CccccHHHHHHhhccCCeEEEe
Confidence 349998752 2236677888899999999983
No 193
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.70 E-value=0.00051 Score=59.26 Aligned_cols=129 Identities=20% Similarity=0.253 Sum_probs=89.1
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCC---CCCCC--CEEE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFV---SVPKG--DAIF 264 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~---~~~~~--D~i~ 264 (366)
.++..+|||.-.|-|..++..+++.. ..++.++- |.+++.++-+ .+++++.||..+ .+++. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 45678999999999999999888643 25655554 8888877654 358999999876 45543 8875
Q ss_pred eccccccCC------hHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHH
Q 017777 265 IKWICHDWS------DEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRA 338 (366)
Q Consensus 265 ~~~~lh~~~------~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 338 (366)
|+-| .--...+-++++++|+|||+++-..-..... . .|+. -.....+
T Consensus 211 -----HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r---------y------------rG~d-~~~gVa~ 263 (287)
T COG2521 211 -----HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR---------Y------------RGLD-LPKGVAE 263 (287)
T ss_pred -----eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---------c------------ccCC-hhHHHHH
Confidence 3322 1124578999999999999998654321110 1 1111 2456788
Q ss_pred HHHHcCCceeEEEECCC
Q 017777 339 LAKAAGFQGFQVVSSAF 355 (366)
Q Consensus 339 ll~~aGf~~~~~~~~~~ 355 (366)
.|+++||.+++......
T Consensus 264 RLr~vGF~~v~~~~~~~ 280 (287)
T COG2521 264 RLRRVGFEVVKKVREAL 280 (287)
T ss_pred HHHhcCceeeeeehhcc
Confidence 99999999888766543
No 194
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.69 E-value=0.00038 Score=60.24 Aligned_cols=126 Identities=20% Similarity=0.186 Sum_probs=86.0
Q ss_pred EEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCCCCCC---CCEEEeccccccCC
Q 017777 205 VVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFVSVPK---GDAIFIKWICHDWS 273 (366)
Q Consensus 205 vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~~~---~D~i~~~~~lh~~~ 273 (366)
|.||||-.|.+...|++...--+++..|+ +..++.|++ .+++++..+|-++..+. .|+|+++.+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999887778999997 666665543 26899999998885543 378887654 4
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 274 DEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 274 ~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
-.-..++|.+....++...++++.-. .....++++|.+.||.++.-.-+
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILqP~-------------------------------~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQPN-------------------------------THAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEEES-------------------------------S-HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEEeCC-------------------------------CChHHHHHHHHHCCCEEEEeEEE
Confidence 45677888888877766666666321 12567899999999998764333
Q ss_pred ---CCceeEEEEEec
Q 017777 354 ---AFNTYIMEFLKS 365 (366)
Q Consensus 354 ---~~~~~vie~~k~ 365 (366)
+-.+-||.+.+.
T Consensus 126 ~e~~~~YeIi~~~~~ 140 (205)
T PF04816_consen 126 EENGRFYEIIVAERG 140 (205)
T ss_dssp EETTEEEEEEEEEES
T ss_pred eECCEEEEEEEEEeC
Confidence 345566666553
No 195
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00034 Score=62.28 Aligned_cols=93 Identities=18% Similarity=0.341 Sum_probs=64.8
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc--hhHHh-hCCCCCCceEEEccCCC-CCCC--CCE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL--PHVIQ-DAPAFPGVEHVGGDMFV-SVPK--GDA 262 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~-~a~~~~~v~~~~~D~~~-~~~~--~D~ 262 (366)
...+++... ..+...|||||+|.|.++..|+++...+.++-+|. .+.+. .....++++++.+|+.+ +++. .-.
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~ 97 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPY 97 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCC
Confidence 556777666 56688999999999999999999988777777772 22222 22235889999999998 7774 323
Q ss_pred EEeccccccCChHHHHHHHH
Q 017777 263 IFIKWICHDWSDEHCVKFLK 282 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~ 282 (366)
.+..|.-|+.+.+-..++|+
T Consensus 98 ~vVaNlPY~Isspii~kll~ 117 (259)
T COG0030 98 KVVANLPYNISSPILFKLLE 117 (259)
T ss_pred EEEEcCCCcccHHHHHHHHh
Confidence 34456667766654334433
No 196
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.64 E-value=0.00025 Score=69.06 Aligned_cols=98 Identities=19% Similarity=0.266 Sum_probs=65.9
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCC-----CC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVS-----VP 258 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~-----~~ 258 (366)
.+...+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ .+++++.+|+.+. ..
T Consensus 283 ~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 283 RALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred HHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhc
Confidence 3444443 4566899999999999999998864 37899997 8888777642 5799999998641 11
Q ss_pred -C-CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 259 -K-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 259 -~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
. .|+|++.--=-.+ ...+++.+.+ ++|++.+++
T Consensus 360 ~~~~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 360 GQIPDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred CCCCCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEE
Confidence 2 3888863221110 1355665554 788876666
No 197
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.61 E-value=0.00022 Score=61.10 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=59.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--C-C--C-C-CCEEEe
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--S-V--P-K-GDAIFI 265 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~--~-~-~D~i~~ 265 (366)
...+|||++||+|.++..++.+... +++.+|. +.+++.++++ .+++++.+|+++ . . . . .|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 3578999999999999999998654 7888887 6666555432 468899999855 1 1 1 2 266666
Q ss_pred ccccccCChHHHHHHHHHHH--HhCCCCcEEEEEcc
Q 017777 266 KWICHDWSDEHCVKFLKNCY--EALPVNGKVIVAES 299 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~--~~L~pgG~lli~e~ 299 (366)
---+.. .....++..+. .+|+++|.++ +|.
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv-~E~ 159 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILEDTVLIV-VEE 159 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCCCeEEE-EEe
Confidence 433322 11223444443 3577777554 444
No 198
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.56 E-value=8.8e-05 Score=62.44 Aligned_cols=100 Identities=15% Similarity=0.251 Sum_probs=65.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------------CCCceEEEccCCCCCCCC-CEEEe
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------------FPGVEHVGGDMFVSVPKG-DAIFI 265 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~D~~~~~~~~-D~i~~ 265 (366)
....+.|||||-|.++..|...+|+.-+.|.++ ..+.+..++ ..++.+...+.+.-.|.. .--.+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 346689999999999999999999999999886 445443321 245666666655433321 11112
Q ss_pred ccccccCChHH-----------HHHHHHHHHHhCCCCcEEEEEccc
Q 017777 266 KWICHDWSDEH-----------CVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 266 ~~~lh~~~~~~-----------~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
+-.++.+||+. ...++.+..-+|++||.++.+.-+
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 22222333332 246788888999999999987654
No 199
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.55 E-value=0.00015 Score=61.75 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=65.4
Q ss_pred hHHHHHHhccCCC--CCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecchhHHhhCCCCCCceEEEccCCCC--------
Q 017777 188 TMKKILENYKGFE--GLNSVVDVGGGIGATLNMIISKY-PSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVS-------- 256 (366)
Q Consensus 188 ~~~~~~~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~-------- 256 (366)
-+.++.+.++-++ +..++||+||++|.++..++++. +..+++++|+.... ....+.++.+|+.++
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~ 83 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRK 83 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGG
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc----cccceeeeecccchhhHHHhhhh
Confidence 3556777776333 45899999999999999999987 66789999984441 113445555555431
Q ss_pred -CC---CC-CEEEeccccccCC---------hHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 257 -VP---KG-DAIFIKWICHDWS---------DEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 257 -~~---~~-D~i~~~~~lh~~~---------~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+ .. |+|++-.....-. .+-+...|.-+...|+|||.+++--.
T Consensus 84 ~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 84 LLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp SHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred hccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 11 23 8888755222111 11233455566677899999888544
No 200
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.47 E-value=0.0073 Score=55.82 Aligned_cols=92 Identities=16% Similarity=0.101 Sum_probs=68.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCCCC--CC-CEEEeccccccCChHH
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVP--KG-DAIFIKWICHDWSDEH 276 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~--~~-D~i~~~~~lh~~~~~~ 276 (366)
..+.++|||||++|.++..++++ +.+++.+|...+.......++|.+...|.+...| .. |.+++-.+-+ +
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~----P- 282 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK----P- 282 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC----H-
Confidence 46789999999999999999996 4599999986666666667999999999887333 23 9998876643 2
Q ss_pred HHHHHHHHHHhCCCC-cEEEEEcc
Q 017777 277 CVKFLKNCYEALPVN-GKVIVAES 299 (366)
Q Consensus 277 ~~~~L~~~~~~L~pg-G~lli~e~ 299 (366)
..+++-+.++|..| -+-.|...
T Consensus 283 -~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 283 -ARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred -HHHHHHHHHHHhcCcccEEEEEE
Confidence 35677788888776 23444443
No 201
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.46 E-value=0.00028 Score=62.20 Aligned_cols=75 Identities=17% Similarity=0.374 Sum_probs=55.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhC----CCC---CCceEEEccCCC-CCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA----PAF---PGVEHVGGDMFV-SVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a----~~~---~~v~~~~~D~~~-~~~~~ 260 (366)
..+++..-+ ......||+||.|||.++..|++.-..+-.+-.| |.++... +.. ..++++.+|++. +.|..
T Consensus 47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~D-prmvael~krv~gtp~~~kLqV~~gD~lK~d~P~f 124 (315)
T KOG0820|consen 47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEID-PRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRF 124 (315)
T ss_pred HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecC-cHHHHHHHHHhcCCCccceeeEEecccccCCCccc
Confidence 556777776 7888999999999999999999976544444445 5554433 322 579999999998 77877
Q ss_pred CEEEe
Q 017777 261 DAIFI 265 (366)
Q Consensus 261 D~i~~ 265 (366)
|.++.
T Consensus 125 d~cVs 129 (315)
T KOG0820|consen 125 DGCVS 129 (315)
T ss_pred ceeec
Confidence 77765
No 202
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.46 E-value=0.00041 Score=66.11 Aligned_cols=90 Identities=7% Similarity=-0.044 Sum_probs=61.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCC---C-CCCCEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVS---V-PKGDAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~-~~~D~i~~~~~l 269 (366)
...+|||+|||+|.++..++.. ..+++++|. +.+++.++++ ++++++.+|+.+. . ...|+|++.---
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3478999999999999999864 468999997 7777766542 4789999998651 1 224988875332
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
-.+ ...+++.+. .++|++.+++.
T Consensus 311 ~G~----~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 311 RGI----GKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCC----cHHHHHHHH-hcCCCeEEEEE
Confidence 111 124455554 36888777664
No 203
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.44 E-value=0.0015 Score=54.78 Aligned_cols=139 Identities=19% Similarity=0.167 Sum_probs=84.6
Q ss_pred CCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecchhHHh-----------hCCC--CCCceEEEccCCC-CCCCC-C
Q 017777 198 GFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDLPHVIQ-----------DAPA--FPGVEHVGGDMFV-SVPKG-D 261 (366)
Q Consensus 198 ~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~-----------~a~~--~~~v~~~~~D~~~-~~~~~-D 261 (366)
+++...+|+|+=.|.|.++.-+.... |.-.++.+--.+... .+++ +.+++.+..+... ..|+. |
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 37788999999999999998776654 333333332111111 1111 1455555555544 43444 7
Q ss_pred EEEeccccccC-----ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHH
Q 017777 262 AIFIKWICHDW-----SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEF 336 (366)
Q Consensus 262 ~i~~~~~lh~~-----~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 336 (366)
+++....-|.+ ....+.++-+.++++|||||.+++.|............. + .++ ....-.
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~-------------~-~~r-i~~a~V 189 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTI-------------T-LHR-IDPAVV 189 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhh-------------h-hcc-cChHHH
Confidence 77775444433 234566889999999999999999998765432221100 0 111 345667
Q ss_pred HHHHHHcCCceeEEE
Q 017777 337 RALAKAAGFQGFQVV 351 (366)
Q Consensus 337 ~~ll~~aGf~~~~~~ 351 (366)
.+..+++||+...-.
T Consensus 190 ~a~veaaGFkl~aeS 204 (238)
T COG4798 190 IAEVEAAGFKLEAES 204 (238)
T ss_pred HHHHHhhcceeeeee
Confidence 788899999976443
No 204
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.41 E-value=0.0019 Score=56.08 Aligned_cols=119 Identities=21% Similarity=0.239 Sum_probs=83.0
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hh---HHhhCCC---CCCceEEEccCCC--CCCC-CCEEEecccccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PH---VIQDAPA---FPGVEHVGGDMFV--SVPK-GDAIFIKWICHD 271 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~---~~~~a~~---~~~v~~~~~D~~~--~~~~-~D~i~~~~~lh~ 271 (366)
..+++|||.|.|.-+.-++-.+|+.+++.+|. .. .++.+.. .++++++++-+.+ +.+. +|+|++.-+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 68999999999999999998899999999994 22 2333322 3679999888766 2234 79998875532
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
...++.-+...+++||.++..-... ++. -..+.+......|+.+..+.
T Consensus 147 -----L~~l~e~~~pllk~~g~~~~~k~~~--------------------------~~~-e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 147 -----LNVLLELCLPLLKVGGGFLAYKGLA--------------------------GKD-ELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred -----hHHHHHHHHHhcccCCcchhhhHHh--------------------------hhh-hHHHHHHHHHhhcCcEEEEE
Confidence 2466778888999999886532211 000 13455666777788888776
Q ss_pred EC
Q 017777 352 SS 353 (366)
Q Consensus 352 ~~ 353 (366)
..
T Consensus 195 ~~ 196 (215)
T COG0357 195 SL 196 (215)
T ss_pred Ee
Confidence 65
No 205
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.35 E-value=0.0046 Score=55.79 Aligned_cols=138 Identities=14% Similarity=0.179 Sum_probs=88.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc------hhHHhhCCC--------------------------------
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL------PHVIQDAPA-------------------------------- 242 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~------~~~~~~a~~-------------------------------- 242 (366)
...+||-=|||.|+++..|+...+.+.+--+.. .-++...+.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 467899999999999999998877766532220 111111100
Q ss_pred -------CCCceEEEccCCC--CCCC----CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCch
Q 017777 243 -------FPGVEHVGGDMFV--SVPK----GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSL 309 (366)
Q Consensus 243 -------~~~v~~~~~D~~~--~~~~----~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~ 309 (366)
......-.||+.+ +.+. .|+|+.++.+. +.....+.|+.|+..|+|||..+=.-+..-.-.....
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g 307 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHG 307 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCC
Confidence 0123445588877 3333 29998886664 3456779999999999999998876654322110000
Q ss_pred hhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 310 ASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
. . ...+.+.+.+++..+.+.-||++++-..+
T Consensus 308 ------~-~------~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 308 ------V-E------NEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred ------C-c------ccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 0 0 01255678999999999999998765443
No 206
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.34 E-value=0.00045 Score=63.11 Aligned_cols=66 Identities=18% Similarity=0.166 Sum_probs=54.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC----CCceEEEccCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF----PGVEHVGGDMFV 255 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~ 255 (366)
+.++++.+. ..+...+||.+||.|..+..+++.+| +.+++++|. |.+++.+++. .+++++.+|+.+
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 556777776 55667999999999999999999986 789999998 8888877642 478888888765
No 207
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.33 E-value=0.00014 Score=61.77 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=66.4
Q ss_pred eEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhH---HhhCCC---CCCceEEEccCCC-CCCC-CCEEEeccccccCCh
Q 017777 204 SVVDVGGGIGATLNMIISKYPSIKGINFDL-PHV---IQDAPA---FPGVEHVGGDMFV-SVPK-GDAIFIKWICHDWSD 274 (366)
Q Consensus 204 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~---~~~v~~~~~D~~~-~~~~-~D~i~~~~~lh~~~~ 274 (366)
+++|||+|.|.-+.-++-.+|+.+++.+|. ..- ++.+.. .++++++++.+.+ ..+. .|+|++.-+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999995 222 222221 3689999988876 3333 39999876642
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
...++.-+...++|||+++..-
T Consensus 127 --l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEEEEEEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEc
Confidence 3477888999999999999864
No 208
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.33 E-value=0.00013 Score=61.69 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=78.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCC-CCCEEEeccccccCChHHHH
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVP-KGDAIFIKWICHDWSDEHCV 278 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~-~~D~i~~~~~lh~~~~~~~~ 278 (366)
.+.++||+|+|.|..+..+...+.. +..-++ ..|+.+.++ .+.+++...-+.... +.|+|.|.++|....++ -
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k-k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p--~ 186 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK-KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP--F 186 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh-cCCceeeehhhhhcCceeehHHHHHHHHhhcCh--H
Confidence 4689999999999999988765543 222233 444444432 233332221111111 23999999999554443 4
Q ss_pred HHHHHHHHhCCC-CcEEEEEcccc-----CCCCCCchhhhhhhhcchhhHhhCCCCccC--CHHHHHHHHHHcCCceeEE
Q 017777 279 KFLKNCYEALPV-NGKVIVAESIL-----PVTPDTSLASKVVIHVDCIMLAHNPGGKER--TEQEFRALAKAAGFQGFQV 350 (366)
Q Consensus 279 ~~L~~~~~~L~p-gG~lli~e~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~e~~~ll~~aGf~~~~~ 350 (366)
++|+.+..+|+| .|++++.=... .-+..+.+.. ....++ -+|+.+ ....+.++|+++||++...
T Consensus 187 kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~r-Pdn~Le-------~~Gr~~ee~v~~~~e~lr~~g~~veaw 258 (288)
T KOG3987|consen 187 KLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLR-PDNLLE-------NNGRSFEEEVARFMELLRNCGYRVEAW 258 (288)
T ss_pred HHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCC-chHHHH-------hcCccHHHHHHHHHHHHHhcCchhhhh
Confidence 899999999999 78877742211 1011111100 001111 134433 2345678999999998765
Q ss_pred EEC
Q 017777 351 VSS 353 (366)
Q Consensus 351 ~~~ 353 (366)
...
T Consensus 259 Trl 261 (288)
T KOG3987|consen 259 TRL 261 (288)
T ss_pred hcC
Confidence 554
No 209
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.00032 Score=63.93 Aligned_cols=110 Identities=15% Similarity=0.264 Sum_probs=68.4
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCe-EEEecchhH----HhhCCCC---CCceEEEccCCC---CCCC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIK-GINFDLPHV----IQDAPAF---PGVEHVGGDMFV---SVPK 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~----~~~a~~~---~~v~~~~~D~~~---~~~~ 259 (366)
.+....+++. +.+|||||.|.|.-+-++-..+|+++ ++++..... +....++ ........|+.. ++|.
T Consensus 104 ~L~~~~~dfa-pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ 182 (484)
T COG5459 104 ELQKRVPDFA-PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA 182 (484)
T ss_pred HHHHhCCCcC-cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc
Confidence 3333334333 46799999999999988888899885 455554222 2222211 122222333332 5666
Q ss_pred CCEEEeccccccCC----hHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 260 GDAIFIKWICHDWS----DEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 260 ~D~i~~~~~lh~~~----~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.|.|.+..++|.+- ..+....++.+-..+.|||.|+|+|.-.
T Consensus 183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 67776666665442 2234458999999999999999999743
No 210
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.18 E-value=0.0061 Score=55.00 Aligned_cols=148 Identities=12% Similarity=0.075 Sum_probs=94.6
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC---------CCCceEEEccCCCC---------C-CCC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA---------FPGVEHVGGDMFVS---------V-PKG 260 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~---------~-~~~ 260 (366)
.+...|+.+|||--....++... ++++++-+|.|++++.-++ ..+.+++..|+... + +..
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34568999999998888877432 3688899999988764322 25788899998631 1 111
Q ss_pred -CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhh-HhhCCCCccCCHHHHHH
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIM-LAHNPGGKERTEQEFRA 338 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~~~ 338 (366)
-++++-.++++++.++..++|+.+.+...||+.|++ |.+.+-..... ............ ....+--...+.+++.+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRPLDGEWR-AGMRAPVYHAARGVDGSGLVFGIDRADVAE 236 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-EeccccchhHH-HHHHHHHHHhhhcccccccccCCChhhHHH
Confidence 577788999999999999999999999888887775 44333111000 000000000000 00000011246899999
Q ss_pred HHHHcCCceeEE
Q 017777 339 LAKAAGFQGFQV 350 (366)
Q Consensus 339 ll~~aGf~~~~~ 350 (366)
+|.+.||+....
T Consensus 237 ~l~~~Gw~~~~~ 248 (260)
T TIGR00027 237 WLAERGWRASEH 248 (260)
T ss_pred HHHHCCCeeecC
Confidence 999999998665
No 211
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=0.0028 Score=52.89 Aligned_cols=104 Identities=21% Similarity=0.280 Sum_probs=68.2
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecchhHHhhCCCCCCceEEEc-cCCCC---------CCC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDLPHVIQDAPAFPGVEHVGG-DMFVS---------VPK 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~-D~~~~---------~~~ 259 (366)
++-++|.-+.+..+|||+||..|.++.-..++. |+-.+.++|+.+.. .-.++.++++ |+.+| .|.
T Consensus 59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----PPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred eehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----CCCCcccccccccCCHHHHHHHHHhCCC
Confidence 455666656778999999999999999988887 99899999974432 1245666666 66553 232
Q ss_pred C--CEEEeccccccC----------ChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 G--DAIFIKWICHDW----------SDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 ~--D~i~~~~~lh~~----------~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. |+|++-+. ++- .-+-|..+|.-....++|+|.+++--.
T Consensus 135 r~VdvVlSDMa-pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w 185 (232)
T KOG4589|consen 135 RPVDVVLSDMA-PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW 185 (232)
T ss_pred CcccEEEeccC-CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence 2 77765332 221 112244455555666789999888543
No 212
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.14 E-value=0.0014 Score=62.47 Aligned_cols=90 Identities=17% Similarity=0.056 Sum_probs=67.4
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC--C-CCCCCEEEecccccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV--S-VPKGDAIFIKWICHD 271 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~-~~~~D~i~~~~~lh~ 271 (366)
..+|||++||+|..+..++...+..+++++|+ +..++.++++ .++++..+|... . .+..|+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999999999998877567899998 7777766542 456688888755 2 22349998843 1
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
... ..+|..+.+.++|||.+.+.
T Consensus 135 -Gs~--~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GSP--APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCc--HHHHHHHHHHhcCCCEEEEE
Confidence 222 36788877788999999997
No 213
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.0027 Score=55.29 Aligned_cols=97 Identities=18% Similarity=0.442 Sum_probs=72.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCC----CeEEEecc-hhHHhh-----CCCCCCc--eEEEccCCC---CCCCC--C-E
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPS----IKGINFDL-PHVIQD-----APAFPGV--EHVGGDMFV---SVPKG--D-A 262 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~-----a~~~~~v--~~~~~D~~~---~~~~~--D-~ 262 (366)
+...++|+|.|+..=+..|+..+.. ++.+-+|+ ..+++. .++++.+ .-+++|+.. ..|.+ . .
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 4688999999999888887777755 67888887 333322 2335554 456788765 23433 3 4
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
+++-..|-+++++++..+|..++.+|+||-++++-
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 46678999999999999999999999999988883
No 214
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.00035 Score=56.71 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=66.2
Q ss_pred CCeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC---------CCCceEEEccCCCC--C-CC--CCEEEe
Q 017777 202 LNSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPA---------FPGVEHVGGDMFVS--V-PK--GDAIFI 265 (366)
Q Consensus 202 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~~--~-~~--~D~i~~ 265 (366)
..+||++|+| +|..+..++...|...+..-|- .+.++..++ ..++.++..+.... + .+ .|+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 4789999999 5666666666677777877784 444443332 14455555555442 1 12 399999
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
..++.. ++....+.+.|+..|+|.|+-++..+
T Consensus 110 ADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 110 ADCLFF--DEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred ccchhH--HHHHHHHHHHHHHHhCcccceeEecC
Confidence 988865 56677899999999999999777544
No 215
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.97 E-value=0.0067 Score=49.26 Aligned_cols=95 Identities=21% Similarity=0.293 Sum_probs=62.4
Q ss_pred EEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC---CC---ceEEEccCCC---CCCC--C-CEEEeccccc
Q 017777 205 VVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF---PG---VEHVGGDMFV---SVPK--G-DAIFIKWICH 270 (366)
Q Consensus 205 vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~---~~---v~~~~~D~~~---~~~~--~-D~i~~~~~lh 270 (366)
++|+|||+|... .+....+. ..++++|. +.++...+.. .. +.+...|... ++.. . |++.....+|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 33333333 36777886 5555443221 11 5777777653 4443 3 8884444444
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 271 DWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
+.. ....++.+.+.++|+|.+++.......
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 444 468899999999999999998876543
No 216
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.049 Score=46.31 Aligned_cols=144 Identities=13% Similarity=0.136 Sum_probs=96.2
Q ss_pred ccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-----hhHHhhCCCCCCceEEEccCCCCCC-----CC-CEEE
Q 017777 196 YKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-----PHVIQDAPAFPGVEHVGGDMFVSVP-----KG-DAIF 264 (366)
Q Consensus 196 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~D~~~~~~-----~~-D~i~ 264 (366)
++ ++++.+||=+|..+|.....+..-.++-.+.++.. .+.+..+++.+++--+-+|...|.. +. |+|+
T Consensus 72 ~p-i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 72 FP-IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CC-cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEE
Confidence 44 67899999999999999999998888666677764 3445667777899889999877643 23 8876
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcC
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAG 344 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 344 (366)
.- +- -+.++.-+..++..-||+||++++.=-...-+.+.++.. . + .+|. +-|++.|
T Consensus 151 ~D-VA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~----v--------f-------~~ev-~kL~~~~ 206 (231)
T COG1889 151 QD-VA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEE----V--------F-------KDEV-EKLEEGG 206 (231)
T ss_pred Ee-cC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHH----H--------H-------HHHH-HHHHhcC
Confidence 52 21 134566788899999999998777544333222111100 0 0 2233 4567889
Q ss_pred CceeEEEECC---CceeEEEEEe
Q 017777 345 FQGFQVVSSA---FNTYIMEFLK 364 (366)
Q Consensus 345 f~~~~~~~~~---~~~~vie~~k 364 (366)
|++.++..+. ..+.++.+.+
T Consensus 207 f~i~e~~~LePye~DH~~i~~~~ 229 (231)
T COG1889 207 FEILEVVDLEPYEKDHALIVAKY 229 (231)
T ss_pred ceeeEEeccCCcccceEEEEEee
Confidence 9999888774 3445555443
No 217
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.94 E-value=0.03 Score=48.26 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=84.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhC----CCC---CCceEEEccCCCCCC-C-C-CEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDA----PAF---PGVEHVGGDMFVSVP-K-G-DAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~---~~v~~~~~D~~~~~~-~-~-D~i~~~~~l 269 (366)
...++.||||-.|.+...|++.++...++..|. +..++.+ +++ ++++...+|.+.++. + . |+++...+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 344599999999999999999999989998886 4333333 322 789999999987543 3 2 88876543
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
.-.-...+|..-.+-|+.--++++. |+. ...++++||.+.+|.++.
T Consensus 95 ---GG~lI~~ILee~~~~l~~~~rlILQ----------------------------Pn~---~~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 95 ---GGTLIREILEEGKEKLKGVERLILQ----------------------------PNI---HTYELREWLSANSYEIKA 140 (226)
T ss_pred ---cHHHHHHHHHHhhhhhcCcceEEEC----------------------------CCC---CHHHHHHHHHhCCceeee
Confidence 4456678888888877644455552 111 246788899999999875
Q ss_pred EEECC
Q 017777 350 VVSSA 354 (366)
Q Consensus 350 ~~~~~ 354 (366)
-.-+.
T Consensus 141 E~ile 145 (226)
T COG2384 141 ETILE 145 (226)
T ss_pred eeeec
Confidence 44443
No 218
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.93 E-value=0.0034 Score=53.35 Aligned_cols=105 Identities=18% Similarity=0.159 Sum_probs=67.3
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCe---------EEEecc-hhHHhhCCCC-------CCceEEEccC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIK---------GINFDL-PHVIQDAPAF-------PGVEHVGGDM 253 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~~-------~~v~~~~~D~ 253 (366)
.++.... +.+...|+|-=||+|.+..+.+...+++. +++.|+ +.+++.++++ ..+.+...|+
T Consensus 19 ~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 19 ALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 3444333 77788999999999999999887777766 889997 7777666542 4588999999
Q ss_pred CC-CCCC-C-CEEEecccccc-CChH-H----HHHHHHHHHHhCCCCcEEEE
Q 017777 254 FV-SVPK-G-DAIFIKWICHD-WSDE-H----CVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 254 ~~-~~~~-~-D~i~~~~~lh~-~~~~-~----~~~~L~~~~~~L~pgG~lli 296 (366)
.+ +.+. . |+|++.--.-. .+.. + ...+++.++++|+|...+++
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 87 6433 3 99998654432 1221 1 24678999999998444444
No 219
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.92 E-value=0.0016 Score=58.12 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=65.1
Q ss_pred EEEccCCC--CC------CC-CCEEEeccccccC--ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhh
Q 017777 248 HVGGDMFV--SV------PK-GDAIFIKWICHDW--SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIH 316 (366)
Q Consensus 248 ~~~~D~~~--~~------~~-~D~i~~~~~lh~~--~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 316 (366)
++..|+.+ |. |+ .|++++..+|... +.++-...++++.++|||||.|++........ +.
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~----------Y~ 207 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY----------YM 207 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE----------EE
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee----------EE
Confidence 66788887 22 23 4999999998654 34567899999999999999999988754321 00
Q ss_pred cchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECC-----CceeEEEEEe
Q 017777 317 VDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSA-----FNTYIMEFLK 364 (366)
Q Consensus 317 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-----~~~~vie~~k 364 (366)
..-.. ......+.+.+++.|+++||.+.+..... .++-.+.++|
T Consensus 208 vG~~~----F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 208 VGGHK----FPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp ETTEE----EE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred ECCEe----cccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 00000 01123478999999999999988876411 3444555554
No 220
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.92 E-value=0.0032 Score=56.95 Aligned_cols=96 Identities=18% Similarity=0.321 Sum_probs=63.6
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhC----CCCCCceEEEccCCC-CCCC--
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDA----PAFPGVEHVGGDMFV-SVPK-- 259 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~D~~~-~~~~-- 259 (366)
....+++.+. ..+...|||||+|.|.++..|++.. .++++++. +..++.. ...++++++.+|+++ +.+.
T Consensus 18 ~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 18 IADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence 3556777776 6678999999999999999999988 45666654 4444333 335899999999998 5444
Q ss_pred --CCEEEeccccccCChHHHHHHHHHHHHhCCC
Q 017777 260 --GDAIFIKWICHDWSDEHCVKFLKNCYEALPV 290 (366)
Q Consensus 260 --~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p 290 (366)
..+.+..+.-++.+. .++.++...-+.
T Consensus 95 ~~~~~~vv~NlPy~is~----~il~~ll~~~~~ 123 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNISS----PILRKLLELYRF 123 (262)
T ss_dssp SSSEEEEEEEETGTGHH----HHHHHHHHHGGG
T ss_pred cCCceEEEEEecccchH----HHHHHHhhcccc
Confidence 344455555555443 456666554344
No 221
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.91 E-value=0.005 Score=56.67 Aligned_cols=94 Identities=30% Similarity=0.467 Sum_probs=70.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCC-eEEEecc-hhHHhhCCCC-------------CCceEEEccCCCC-C--CCC-
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSI-KGINFDL-PHVIQDAPAF-------------PGVEHVGGDMFVS-V--PKG- 260 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-------------~~v~~~~~D~~~~-~--~~~- 260 (366)
++..++|-+|||.|..+.++++ +|+. +++.+|+ |.|++.++.. +|++++..|.++- . .+.
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4668999999999999998876 6865 5778888 9999988731 7899999998872 1 222
Q ss_pred CEEEeccccccCChHH--------HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 261 DAIFIKWICHDWSDEH--------CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~--------~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
|+++. +++|+. ..++-.-+++.|+++|.+++.-.
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 77765 223221 24677888899999999998653
No 222
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.001 Score=53.03 Aligned_cols=68 Identities=18% Similarity=0.158 Sum_probs=49.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCCCC---CEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVPKG---DAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~---D~i~~~~~l 269 (366)
.+.+++|+|||.|.++.+... +..-.++|+|+ |+.++.+.++ -++.+++.|+.++.+.+ |..+.+.-+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 368899999999999944333 23335799999 9999888765 36788999998854432 777776554
No 223
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=96.90 E-value=0.00031 Score=46.53 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=39.1
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+.|++.|.+.+ ++.|+.|||+++|+ +..-+.|+|..|+..||+++
T Consensus 6 l~iL~~l~~~~--~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~ 50 (52)
T PF09339_consen 6 LRILEALAESG--GPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVER 50 (52)
T ss_dssp HHHHHCHHCTB--SCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeec
Confidence 45778888764 57899999999999 99999999999999999996
No 224
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.021 Score=50.69 Aligned_cols=116 Identities=16% Similarity=0.245 Sum_probs=76.2
Q ss_pred HHHHhhhcchh----hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-----hhHHhhCCCC---
Q 017777 177 FNNGMSSHSTI----TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-----PHVIQDAPAF--- 243 (366)
Q Consensus 177 ~~~~m~~~~~~----~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-----~~~~~~a~~~--- 243 (366)
|...|...+.. ....++..+. .....+|++-|.|+|.++..+++.. |.-+++.+|. ..+.+..+++
T Consensus 78 WTl~LphRTQI~Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~ 156 (314)
T KOG2915|consen 78 WTLALPHRTQILYTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG 156 (314)
T ss_pred hhhhccCcceEEecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC
Confidence 33445444432 2345666666 7888999999999999999999886 6667888885 3344444443
Q ss_pred CCceEEEccCCC-CCC--C--CCEEEeccccccCChHHHHHHHHHHHHhCCCCc-EEEEEccc
Q 017777 244 PGVEHVGGDMFV-SVP--K--GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNG-KVIVAESI 300 (366)
Q Consensus 244 ~~v~~~~~D~~~-~~~--~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG-~lli~e~~ 300 (366)
+++++...|+-. -+. + +|+|++ ++|.+. ..+--+.++||.+| +++...++
T Consensus 157 ~~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 157 DNVTVTHRDVCGSGFLIKSLKADAVFL-----DLPAPW--EAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred cceEEEEeecccCCccccccccceEEE-----cCCChh--hhhhhhHHHhhhcCceEEeccHH
Confidence 678898888876 343 2 288887 344443 33555555777665 66665544
No 225
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.86 E-value=0.048 Score=51.68 Aligned_cols=102 Identities=20% Similarity=0.173 Sum_probs=62.8
Q ss_pred CCCeEEEEeCCccHHHHHHH--------Hh-------CCCCeEEEecchhH--HhhCCC------------------CCC
Q 017777 201 GLNSVVDVGGGIGATLNMII--------SK-------YPSIKGINFDLPHV--IQDAPA------------------FPG 245 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~--------~~-------~p~~~~~~~D~~~~--~~~a~~------------------~~~ 245 (366)
+..+|+|+|||+|..+..+. ++ .|.+.+..-|+|.- -..++. ..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 46789999999997654432 22 24566766676411 111110 011
Q ss_pred ---ceEEEccCCC-CCCCC--CEEEeccccccCCh--H----------------------------------HHHHHHHH
Q 017777 246 ---VEHVGGDMFV-SVPKG--DAIFIKWICHDWSD--E----------------------------------HCVKFLKN 283 (366)
Q Consensus 246 ---v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~--~----------------------------------~~~~~L~~ 283 (366)
+.-+++.+.. -+|.. +++++++.||+++. + +...+|+-
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2234577777 57765 99999999998762 0 12234555
Q ss_pred HHHhCCCCcEEEEEccccC
Q 017777 284 CYEALPVNGKVIVAESILP 302 (366)
Q Consensus 284 ~~~~L~pgG~lli~e~~~~ 302 (366)
=++=|.|||++++.-.-++
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHHhccCcEEEEEEecCC
Confidence 5567899999999876554
No 226
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.84 E-value=0.0049 Score=50.15 Aligned_cols=94 Identities=20% Similarity=0.272 Sum_probs=58.6
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHh----CCCCeEEEecc-hhHHhhCCCC---------CCceEEEccCCC-CCCCC-CE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISK----YPSIKGINFDL-PHVIQDAPAF---------PGVEHVGGDMFV-SVPKG-DA 262 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-~~~~~-D~ 262 (366)
..+..+|+|+|||.|.++..|+.. .++++++++|. +..++.+.+. .++++..+++.. ..... ++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 356789999999999999998882 28889999996 5554444321 356666665544 22222 66
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
++--|.--.++ ..+|+...+ |+-..++.-+
T Consensus 103 ~vgLHaCG~Ls----~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 103 LVGLHACGDLS----DRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred EEEeecccchH----HHHHHHHHH---cCCCEEEEcC
Confidence 66544443333 245555544 5655555433
No 227
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.83 E-value=0.01 Score=50.81 Aligned_cols=101 Identities=20% Similarity=0.188 Sum_probs=71.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC-----CCCceEEEc---cCCCCCCCC--CEEEeccc-
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA-----FPGVEHVGG---DMFVSVPKG--DAIFIKWI- 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~~---D~~~~~~~~--D~i~~~~~- 268 (366)
.+..+||.||-|-|.....+-++-|..+.++---|.+.+..+. ..+|....+ |.....+++ |-|+.--.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 5689999999999999988888877755554434777776654 356776665 444445543 77765322
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
=|+ ++...+-+.+.++|||+|++=......-+
T Consensus 180 e~y---Edl~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 180 ELY---EDLRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred hHH---HHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence 222 67788999999999999998877665433
No 228
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.80 E-value=0.005 Score=56.52 Aligned_cols=149 Identities=13% Similarity=0.043 Sum_probs=96.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC----CC-----CceEEEccCCC-CCC---------C-C
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA----FP-----GVEHVGGDMFV-SVP---------K-G 260 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~-----~v~~~~~D~~~-~~~---------~-~ 260 (366)
+...|+-+|||--.-+.++-.. +++++..+|.|++++.-++ .. ++++++.|+++ +.+ . .
T Consensus 92 g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~ 170 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSR 170 (297)
T ss_pred cccEEEEeccccccceeecCCC-CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCC
Confidence 3689999999977766666442 2578899999999875443 22 78999999995 432 1 1
Q ss_pred -CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCch-hhhhhhhcchhhHhhCCCCccCCHHHHHH
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSL-ASKVVIHVDCIMLAHNPGGKERTEQEFRA 338 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 338 (366)
-++++-.++.+++.++..++|..|.....||..++.............. ..................-......++..
T Consensus 171 pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~ 250 (297)
T COG3315 171 PTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIET 250 (297)
T ss_pred CeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHHH
Confidence 5778889999999999999999999999999888886541111100000 00000000000000000011234789999
Q ss_pred HHHHcCCceeEE
Q 017777 339 LAKAAGFQGFQV 350 (366)
Q Consensus 339 ll~~aGf~~~~~ 350 (366)
++.+.||.....
T Consensus 251 ~l~~~g~~~~~~ 262 (297)
T COG3315 251 WLAERGWRSTLN 262 (297)
T ss_pred HHHhcCEEEEec
Confidence 999999997765
No 229
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.80 E-value=0.0021 Score=53.62 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=70.6
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCCCCEEEeccccccCCh
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPKGDAIFIKWICHDWSD 274 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~D~i~~~~~lh~~~~ 274 (366)
..+.|+|.|+|.++.-.+++ .-+++.+.. |...+.+.++ .+++++.+|..+ ++..+|+|+|-..=--+=+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 57899999999999876665 336777776 7777666654 579999999988 7866699987543222234
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
++.+.+++.+..-||-++.++=.+.
T Consensus 112 E~qVpV~n~vleFLr~d~tiiPq~v 136 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTIIPQEV 136 (252)
T ss_pred ccccHHHHHHHHHhhcCCccccHHH
Confidence 5567889999999999988876554
No 230
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.79 E-value=0.0015 Score=61.41 Aligned_cols=100 Identities=21% Similarity=0.182 Sum_probs=75.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC-CCCCC--CEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV-SVPKG--DAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~~~~--D~i~~~~~l 269 (366)
....++|+|||.|.....+. .+.....+++|. +.-+.+... .....++.+|+.. |+++. |.+.+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~-~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIA-VFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHH-HhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 34578999999999987554 466778888886 333332222 1445568889888 77764 999999888
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
.|.++.. .++++++++++|||+.++.+.+...
T Consensus 189 ~~~~~~~--~~y~Ei~rv~kpGG~~i~~e~i~~~ 220 (364)
T KOG1269|consen 189 CHAPDLE--KVYAEIYRVLKPGGLFIVKEWIKTA 220 (364)
T ss_pred ccCCcHH--HHHHHHhcccCCCceEEeHHHHHhh
Confidence 8877664 7799999999999999998886643
No 231
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.78 E-value=0.0066 Score=55.19 Aligned_cols=100 Identities=23% Similarity=0.284 Sum_probs=71.7
Q ss_pred CCeEEEEeCCccHHHHHHHHhC--------------------CCCeEEEecc---hhHHhhCCC----C-----------
Q 017777 202 LNSVVDVGGGIGATLNMIISKY--------------------PSIKGINFDL---PHVIQDAPA----F----------- 243 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~----~----------- 243 (366)
..+||-||||.|.-..+++..+ +.+.++.+|+ ..+++.... .
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3799999999998777766665 2357888886 444433211 0
Q ss_pred --------CCceEEEccCCC-CCC---------CCCEEEeccccccC---ChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 244 --------PGVEHVGGDMFV-SVP---------KGDAIFIKWICHDW---SDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 244 --------~~v~~~~~D~~~-~~~---------~~D~i~~~~~lh~~---~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
-++.|.+.|++. ..+ ..++|.+.++++.+ +-.+-.++|.++...++||..|+|+|...
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 247899999987 221 12888887777653 34456799999999999999999999643
No 232
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.77 E-value=0.0089 Score=58.42 Aligned_cols=102 Identities=18% Similarity=0.241 Sum_probs=68.8
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCC------CCCceEEEccCCC---CCCCC-CEEEe-
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV---SVPKG-DAIFI- 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~~~~-D~i~~- 265 (366)
...+.+|||+++|.|.=+..++....+ -.++..|+ +.-++..++ ..++.+...|... .++.. |.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 456789999999999999999988754 46788886 444433322 2567777777653 23333 88874
Q ss_pred ---c--cccc-------cCChHHH-------HHHHHHHHHhCCCCcEEEEEccc
Q 017777 266 ---K--WICH-------DWSDEHC-------VKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 266 ---~--~~lh-------~~~~~~~-------~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
+ .++. .|+.++. .++|..+.+.|||||+|+-..-.
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 3 2222 3333222 68999999999999999765543
No 233
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.088 Score=46.04 Aligned_cols=150 Identities=17% Similarity=0.157 Sum_probs=90.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc--hhHHhhCCCCCCceEEEc-cCCC----CCCCC-
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL--PHVIQDAPAFPGVEHVGG-DMFV----SVPKG- 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~v~~~~~-D~~~----~~~~~- 260 (366)
+...++.+.-..++..+||||..||.++.-++++-.. .++++|. .+.....+..+|+..+.. |+.. .+.+.
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk-~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAK-HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCc-EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence 4556666662236789999999999999999986433 6788884 344444455577666554 4432 12222
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE-ccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA-ESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
|++++--.+ .....+|-.+...++|++-++.. -+-....+.... .--...+ +.....-..++.++
T Consensus 146 d~~v~DvSF-----ISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~--kkGvv~d-------~~~~~~v~~~i~~~ 211 (245)
T COG1189 146 DLIVIDVSF-----ISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVG--KKGVVRD-------PKLHAEVLSKIENF 211 (245)
T ss_pred CeEEEEeeh-----hhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcC--cCceecC-------cchHHHHHHHHHHH
Confidence 777764333 23458899999999999866653 222211110000 0000001 11223346788999
Q ss_pred HHHcCCceeEEEEC
Q 017777 340 AKAAGFQGFQVVSS 353 (366)
Q Consensus 340 l~~aGf~~~~~~~~ 353 (366)
+.+.||.+..+...
T Consensus 212 ~~~~g~~~~gl~~S 225 (245)
T COG1189 212 AKELGFQVKGLIKS 225 (245)
T ss_pred HhhcCcEEeeeEcc
Confidence 99999999877664
No 234
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=96.62 E-value=0.0018 Score=50.57 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccc
Q 017777 31 SVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLA 110 (366)
Q Consensus 31 ~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t 110 (366)
.-.+.+|.-..++.|+..|.+. ++.++.||++.+++ .++.+.+.|+.|...|+|+.. ..|+ .-.|+++
T Consensus 7 ~~~fkaLadptRl~IL~~L~~~---~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~----r~Gr-~~~Y~l~ 74 (117)
T PRK10141 7 LQLFKILSDETRLGIVLLLRES---GELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDR----KQGK-WVHYRLS 74 (117)
T ss_pred HHHHHHhCCHHHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE----EEcC-EEEEEEC
Confidence 4567788888999999999864 48999999999999 999999999999999999864 3332 3457776
Q ss_pred h
Q 017777 111 P 111 (366)
Q Consensus 111 ~ 111 (366)
+
T Consensus 75 ~ 75 (117)
T PRK10141 75 P 75 (117)
T ss_pred c
Confidence 4
No 235
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.60 E-value=0.019 Score=49.71 Aligned_cols=141 Identities=13% Similarity=0.107 Sum_probs=88.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-h----hHHhhCCCCCCceEEEccCCCCCC-----CC-CEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-P----HVIQDAPAFPGVEHVGGDMFVSVP-----KG-DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~----~~~~~a~~~~~v~~~~~D~~~~~~-----~~-D~i~~~ 266 (366)
+.++.+||-+|.++|.....+..-.. +-.+..++. | +.+..+++.++|--+-.|...|.. +. |+|+.-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 66789999999999999998887764 667777775 3 446667777899989999877532 22 877764
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
-. + + ++..-++.++..-||+||.+++.=-...-+...++.. ...+=.+.|++.||+
T Consensus 151 Va-Q--p-~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~--------------------vf~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 151 VA-Q--P-DQARIAALNARHFLKPGGHLIISIKARSIDSTADPEE--------------------VFAEEVKKLKEEGFK 206 (229)
T ss_dssp -S-S--T-THHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHH--------------------HHHHHHHHHHCTTCE
T ss_pred CC-C--h-HHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHH--------------------HHHHHHHHHHHcCCC
Confidence 22 2 2 4567788999999999999988643211111100000 012223566888999
Q ss_pred eeEEEECC---CceeEEEEE
Q 017777 347 GFQVVSSA---FNTYIMEFL 363 (366)
Q Consensus 347 ~~~~~~~~---~~~~vie~~ 363 (366)
+.+...+. ..+.++.++
T Consensus 207 ~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 207 PLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp EEEEEE-TTTSTTEEEEEEE
T ss_pred hheEeccCCCCCCcEEEEEE
Confidence 99888874 344444443
No 236
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=96.49 E-value=0.0019 Score=44.25 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 33 LPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 33 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.+.+|.--.++.|+..|... +|.|+.|||+.+++ ++.-+.+.|+.|...|+|+..
T Consensus 3 i~~aL~~p~R~~Il~~L~~~---~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~~ 57 (61)
T PF12840_consen 3 IFKALSDPTRLRILRLLASN---GPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEVE 57 (61)
T ss_dssp HHHHHTSHHHHHHHHHHHHC---STBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhCCHHHHHHHHHHhcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 34566677888999999443 59999999999999 999999999999999999964
No 237
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=96.42 E-value=0.0052 Score=43.12 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=47.6
Q ss_pred HHhhChHHHHhhcCCCCC--CCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 40 AIELDLLEIIAKAGPDAF--MSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~--~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
..+-.|+..|.+.+ + +|+.|||+.+|+ +...+++.|..|...|+|.... .. ...|.++.
T Consensus 6 ~~~~~IL~~L~~~g---~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~---~~---~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSG---DETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQG---GT---PPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCC---CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC---CC---CCceEeec
Confidence 45567888898864 5 999999999999 9999999999999999999641 10 36777664
No 238
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=96.40 E-value=0.0046 Score=46.02 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=47.6
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
-+.|++.|.+.+ ++.|+.|||+.+++ +..-+.|.|+.|+..|++..+ +. ++.|++++..
T Consensus 7 ~~~Il~~l~~~~--~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~---~~----~~~y~l~~~~ 65 (91)
T smart00346 7 GLAVLRALAEEP--GGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQD---GQ----NGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHHhCC--CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeec---CC----CCceeecHHH
Confidence 356788887752 48999999999999 999999999999999999963 11 4678887643
No 239
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.32 E-value=0.011 Score=53.44 Aligned_cols=96 Identities=15% Similarity=0.194 Sum_probs=56.0
Q ss_pred CCCeEEEEeCCccHHH-HHHHHh-CCCCeEEEecc-hhHHhhCCC--------CCCceEEEccCCC-C--CCCCCEEEec
Q 017777 201 GLNSVVDVGGGIGATL-NMIISK-YPSIKGINFDL-PHVIQDAPA--------FPGVEHVGGDMFV-S--VPKGDAIFIK 266 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~-~~l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~-~--~~~~D~i~~~ 266 (366)
.+.+|+=||+|.==++ ..+++. .++..++++|+ |+.++.+++ ..++.|+++|..+ + ..+.|+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 3579999999965444 445444 36778899997 777766643 2689999999876 2 3345999887
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
-..-. +.++..++|+++.+.|+||..|++-
T Consensus 200 alVg~-~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVGM-DAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhccc-ccchHHHHHHHHHhhCCCCcEEEEe
Confidence 66542 3445579999999999999998885
No 240
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=96.27 E-value=0.0021 Score=41.47 Aligned_cols=43 Identities=14% Similarity=0.355 Sum_probs=38.5
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLN 92 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 92 (366)
++.|...|.+ +|.++.||++.+++ ++..+.+.|+.|...|+++
T Consensus 4 R~~Il~~L~~----~~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 4 RLRILKLLSE----GPLTVSELAEELGL----SQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHHHHHTT----SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHh----CCCchhhHHHhccc----cchHHHHHHHHHHHCcCee
Confidence 5677888888 59999999999999 9999999999999999986
No 241
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.27 E-value=0.0049 Score=53.11 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=61.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCCCCCC--CCEEEeccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFVSVPK--GDAIFIKWI 268 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~~~--~D~i~~~~~ 268 (366)
..++..|+|.-||.|.++..+++..+...++.+|+ |..++..++ ..++....+|..+-.+. .|-|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l- 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL- 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC-
Confidence 34678999999999999999998777778999998 777765543 26788999998763223 27766643
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEE
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKV 294 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~l 294 (366)
|. ....+|..+.+.+++||.+
T Consensus 178 ----p~-~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 178 ----PE-SSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp ----TS-SGGGGHHHHHHHEEEEEEE
T ss_pred ----hH-HHHHHHHHHHHHhcCCcEE
Confidence 21 2246788899999988876
No 242
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.27 E-value=0.034 Score=47.03 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=66.8
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCCCCCEEEe
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVPKGDAIFI 265 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~D~i~~ 265 (366)
.+..-++.=..++|||+|.|+|..++..++... ..++..|+ |.....++-+ -.|.+...|..-+-+..|+++.
T Consensus 70 ~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~La 148 (218)
T COG3897 70 YIDDHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLA 148 (218)
T ss_pred HHhcCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEe
Confidence 333344344679999999999999887666432 24555555 4444443322 3467777776653334499999
Q ss_pred ccccccCChHHHHHHHHHHHHhCC-CCcEEEEEccccC
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALP-VNGKVIVAESILP 302 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~-pgG~lli~e~~~~ 302 (366)
..++++.+ ....++. +.+.|+ .|-.+++-++-++
T Consensus 149 gDlfy~~~--~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 149 GDLFYNHT--EADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred eceecCch--HHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 99998754 3446677 555554 5556666665443
No 243
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.14 E-value=0.0063 Score=49.37 Aligned_cols=52 Identities=25% Similarity=0.247 Sum_probs=40.7
Q ss_pred eEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC
Q 017777 204 SVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV 255 (366)
Q Consensus 204 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 255 (366)
.++|||||.|.++..+++.+|+.+++.+|. |.+.+.+++. +++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999989999997 6666655432 457777666553
No 244
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.09 E-value=0.011 Score=54.84 Aligned_cols=101 Identities=19% Similarity=0.239 Sum_probs=64.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHh-------CCCCeEEEecc-hhHHhhCCC--------CCCceEEEccCCC-C-CC--
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISK-------YPSIKGINFDL-PHVIQDAPA--------FPGVEHVGGDMFV-S-VP-- 258 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~-~-~~-- 258 (366)
.....+|+|-.||+|.++.++.+. .+...++++|+ +.++..++- .....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 455678999999999999988874 37778999997 555544331 1335688889876 2 22
Q ss_pred -CCCEEEecccc--ccCCh-----------------HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 259 -KGDAIFIKWIC--HDWSD-----------------EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 259 -~~D~i~~~~~l--h~~~~-----------------~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
..|+|+++--+ ..|.+ ..-..++..+.+.|++||++.++-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 23999886333 21111 0112588999999999999877543
No 245
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.07 E-value=0.002 Score=49.55 Aligned_cols=90 Identities=23% Similarity=0.253 Sum_probs=38.6
Q ss_pred EEEeCCccHHHHHHHHhCCCC---eEEEecc-h---hHHhhCCC---CCCceEEEccCCCC---CC-CC-CEEEeccccc
Q 017777 206 VDVGGGIGATLNMIISKYPSI---KGINFDL-P---HVIQDAPA---FPGVEHVGGDMFVS---VP-KG-DAIFIKWICH 270 (366)
Q Consensus 206 LDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~~v~~~~~D~~~~---~~-~~-D~i~~~~~lh 270 (366)
||||+..|..+..+++..+.. +++.+|. + ...+..++ ..+++++.++..+- .+ .. |++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999988877654 5799997 4 23333332 26799999998652 22 22 8887643 23
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 271 DWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
. .+....-++.+.+.|+|||.+++-|
T Consensus 80 ~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 S--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 2455678999999999999998865
No 246
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.07 E-value=0.019 Score=57.37 Aligned_cols=67 Identities=10% Similarity=0.110 Sum_probs=44.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCC--------CeEEEecc-hhHHhhCCCC----C--CceEEEccCCCC-------C-
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPS--------IKGINFDL-PHVIQDAPAF----P--GVEHVGGDMFVS-------V- 257 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~~----~--~v~~~~~D~~~~-------~- 257 (366)
...+|||.+||+|.++..++...+. ..++++|+ +..+..++.. . .+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999887642 45688887 6666554321 2 345555554431 1
Q ss_pred CCCCEEEecc
Q 017777 258 PKGDAIFIKW 267 (366)
Q Consensus 258 ~~~D~i~~~~ 267 (366)
+..|+|+.+-
T Consensus 111 ~~fD~IIgNP 120 (524)
T TIGR02987 111 DLFDIVITNP 120 (524)
T ss_pred CcccEEEeCC
Confidence 1239998863
No 247
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.07 E-value=0.0077 Score=56.95 Aligned_cols=51 Identities=8% Similarity=0.070 Sum_probs=41.5
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV 255 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 255 (366)
.+|||++||+|.++..+++... +++++|. +++++.++++ .+++++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4699999999999998888763 7899997 7787777653 468899988765
No 248
>PHA00738 putative HTH transcription regulator
Probab=96.07 E-value=0.0065 Score=46.01 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=50.1
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
..++.|++.|... ++.++.+|++.+++ .++.+.+.|++|...|+|... +.|+ .-.|++++.
T Consensus 12 ptRr~IL~lL~~~---e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~sr----K~Gr-~vyY~Ln~~ 72 (108)
T PHA00738 12 ILRRKILELIAEN---YILSASLISHTLLL----SYTTVLRHLKILNEQGYIELY----KEGR-TLYAKIREN 72 (108)
T ss_pred HHHHHHHHHHHHc---CCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEE----EECC-EEEEEECCC
Confidence 4678899999884 37999999999999 999999999999999999974 4443 456777643
No 249
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.03 E-value=0.0028 Score=52.56 Aligned_cols=62 Identities=23% Similarity=0.389 Sum_probs=42.8
Q ss_pred eEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC---CC--C-CCEEEecc
Q 017777 204 SVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS---VP--K-GDAIFIKW 267 (366)
Q Consensus 204 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~~--~-~D~i~~~~ 267 (366)
.|+|+-||.|..+..+++.+. +++.+|+ |..++.++.+ ++|.++++|+++. .. . .|+|+++-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 689999999999999999875 4777776 6666665542 5899999999872 22 2 38888753
No 250
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.98 E-value=0.045 Score=56.63 Aligned_cols=111 Identities=15% Similarity=0.022 Sum_probs=71.3
Q ss_pred hHHHHHHhccCC-CCCCeEEEEeCCccHHHHHHHHhC------------------------------------------C
Q 017777 188 TMKKILENYKGF-EGLNSVVDVGGGIGATLNMIISKY------------------------------------------P 224 (366)
Q Consensus 188 ~~~~~~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~------------------------------------------p 224 (366)
.+..++.... | .+...++|-.||+|.++++.+... .
T Consensus 177 lAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 4455565444 6 557899999999999998876531 1
Q ss_pred CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCC-C---CCEEEeccccc-cCCh-HHHHHHHHHHHHhCC
Q 017777 225 SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVP-K---GDAIFIKWICH-DWSD-EHCVKFLKNCYEALP 289 (366)
Q Consensus 225 ~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~-~---~D~i~~~~~lh-~~~~-~~~~~~L~~~~~~L~ 289 (366)
..+++++|+ +.+++.++++ +++.+..+|+.+ +.+ . .|+|+++--.- .+.+ .+...+.+.+.+.++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 236899998 8888777653 468899999877 333 1 39998874431 2222 333344444444443
Q ss_pred ---CCcEEEEEcc
Q 017777 290 ---VNGKVIVAES 299 (366)
Q Consensus 290 ---pgG~lli~e~ 299 (366)
||+++.++..
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 8888777554
No 251
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=95.93 E-value=0.0066 Score=44.48 Aligned_cols=48 Identities=29% Similarity=0.348 Sum_probs=38.3
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
++.|.++||+.+++ ++..++++++.|...|+++.. .|+ ++.|.++...
T Consensus 24 ~~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~-----~G~-~GGy~L~~~~ 71 (83)
T PF02082_consen 24 KPVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESS-----RGR-GGGYRLARPP 71 (83)
T ss_dssp C-BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE-----TST-TSEEEESS-C
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEec-----CCC-CCceeecCCH
Confidence 57999999999999 999999999999999999863 232 4778887543
No 252
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.92 E-value=0.095 Score=48.61 Aligned_cols=106 Identities=19% Similarity=0.116 Sum_probs=73.9
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEc-cCCC-CCCCC--
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGG-DMFV-SVPKG-- 260 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~-D~~~-~~~~~-- 260 (366)
++-++.+..++..|||==||||.++.+..- -+++++|.|+ ..+++-++.+ ....+... |+.. |+++.
T Consensus 188 ~mVNLa~v~~G~~vlDPFcGTGgiLiEagl--~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~v 265 (347)
T COG1041 188 AMVNLARVKRGELVLDPFCGTGGILIEAGL--MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSV 265 (347)
T ss_pred HHHHHhccccCCEeecCcCCccHHHHhhhh--cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCcc
Confidence 333344456678999999999999988765 6788999998 7777766653 23434444 8777 77764
Q ss_pred CEEEeccc------cccCC-hHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 261 DAIFIKWI------CHDWS-DEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 261 D~i~~~~~------lh~~~-~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
|.|++-.- ..-.. ++=..++|+.+.++|++||++++.-+
T Consensus 266 daIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 266 DAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 88877321 11111 23356899999999999999998654
No 253
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=95.90 E-value=0.0078 Score=38.93 Aligned_cols=45 Identities=16% Similarity=0.363 Sum_probs=38.4
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLN 92 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 92 (366)
.+..|+..|.+. ++.|..|||+.+|+ +...+.+.|+-|...|+++
T Consensus 4 ~~~~Il~~l~~~---~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLREN---PRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHC---TTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence 456788999986 47999999999999 9999999999999999974
No 254
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.87 E-value=0.027 Score=53.51 Aligned_cols=97 Identities=14% Similarity=0.096 Sum_probs=72.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCC-eEEEecc-hhHHhhCCCC--------CCceEEEccCCCC----CC---CCCEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSI-KGINFDL-PHVIQDAPAF--------PGVEHVGGDMFVS----VP---KGDAI 263 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~----~~---~~D~i 263 (366)
.+.+|||+=|=||.++...+. .+. +++.+|+ ..+++.++++ .++.++++|.|+- .. ..|+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 478999999999999988877 455 8999997 7777777653 5689999999872 12 23999
Q ss_pred Eec-ccc-----ccCC-hHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 264 FIK-WIC-----HDWS-DEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 264 ~~~-~~l-----h~~~-~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
++- -.+ .-|+ ..+...++..+.+.|+|||.++++..
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 872 111 1121 12456889999999999999999765
No 255
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=95.87 E-value=0.0095 Score=53.30 Aligned_cols=60 Identities=22% Similarity=0.387 Sum_probs=48.9
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKF 115 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~ 115 (366)
+.|++.|...+ .++++.|||+++|+ +..-+.|+|..|+..||++++ .+ +++|++++..-.
T Consensus 7 l~iL~~l~~~~--~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d----~~---~g~Y~Lg~~~~~ 66 (246)
T COG1414 7 LAILDLLAEGP--GGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQD----PE---DGRYRLGPRLLE 66 (246)
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEc----CC---CCcEeehHHHHH
Confidence 56788888743 34679999999999 999999999999999999975 11 468999986543
No 256
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.13 Score=46.66 Aligned_cols=150 Identities=16% Similarity=0.166 Sum_probs=98.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC--CCCeEEEecchhHHhhCC---CC-------------------------CCceE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY--PSIKGINFDLPHVIQDAP---AF-------------------------PGVEH 248 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~---~~-------------------------~~v~~ 248 (366)
.++...|+.+|||.-.+..+|...+ +.+.++-+|.|++++.-- .. ++...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4577899999999999999999988 778889999877764311 00 34555
Q ss_pred EEccCCC--CC----CC----C---CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhh
Q 017777 249 VGGDMFV--SV----PK----G---DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVI 315 (366)
Q Consensus 249 ~~~D~~~--~~----~~----~---D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~ 315 (366)
...|..+ .. .. . -+++.-.+|-++++++...+++-+.+.. |.+.+++.|.+.+.++-+.-......
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F-~~a~fv~YEQi~~~D~Fg~vM~~nlk 243 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKF-ENAHFVNYEQINPNDRFGKVMLANLK 243 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhC-CcccEEEEeccCCCChHHHHHHHHHH
Confidence 6666653 11 00 1 3445567888899999889999988877 57788889998876632211000000
Q ss_pred hcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 316 HVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 316 ~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
..+..+. .-....|.+..++.+.++||+-+.+..
T Consensus 244 ~r~~~L~---gle~y~s~Esq~~Rf~~~Gw~~v~a~D 277 (335)
T KOG2918|consen 244 RRGCPLH---GLETYNSIESQRSRFLKAGWEYVIAVD 277 (335)
T ss_pred hcCCCCc---hhhhcccHHHHHHHHHhcCCceeehhh
Confidence 0000000 001234888899999999999887654
No 257
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=95.77 E-value=0.0093 Score=53.49 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=48.9
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFL 116 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l 116 (366)
+.|++.|...+ .|+|+.|||+.+|+ +..-+.|+|..|+..|||+++ ++.|++.+....+
T Consensus 12 l~IL~~l~~~~--~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~~---------~~~Y~lG~~~~~l 70 (248)
T TIGR02431 12 LAVIEAFGAER--PRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTSD---------GRLFWLTPRVLRL 70 (248)
T ss_pred HHHHHHHhcCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC---------CCEEEecHHHHHH
Confidence 56778887643 58999999999999 999999999999999999962 4789998765433
No 258
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.76 E-value=0.063 Score=46.63 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=71.6
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhh-------CCCCCCceEEEccCCCCC----C---C--CC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQD-------APAFPGVEHVGGDMFVSV----P---K--GD 261 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~-------a~~~~~v~~~~~D~~~~~----~---~--~D 261 (366)
-+++++||||.=+|..+...+.+.|. -+++.+|. +...+. +.-...|+++.++..+.. + . .|
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 35799999999999999999998875 46788886 333333 333478999998876521 1 1 28
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
.+|. .+|.+. ......++-+.+|+||.|++-....+.
T Consensus 152 faFv----DadK~n-Y~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 152 FAFV----DADKDN-YSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred EEEE----ccchHH-HHHHHHHHHhhcccccEEEEeccccCC
Confidence 7774 444443 458999999999999999987655544
No 259
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.63 E-value=0.073 Score=51.53 Aligned_cols=133 Identities=17% Similarity=0.172 Sum_probs=81.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeE-EEe--cchhHHhhCCCCCCceEEEccCCCC---CCCC-CEEEecccccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKG-INF--DLPHVIQDAPAFPGVEHVGGDMFVS---VPKG-DAIFIKWICHD 271 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~-~~~--D~~~~~~~a~~~~~v~~~~~D~~~~---~~~~-D~i~~~~~lh~ 271 (366)
....+.|+|..+|.|.++.+|.+. | +-+ .++ +-+..+...-+. ++--+-+|.-++ +|.. |+|...++|..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~-VWVMNVVP~~~~ntL~vIydR-GLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P-VWVMNVVPVSGPNTLPVIYDR-GLIGVYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C-ceEEEecccCCCCcchhhhhc-ccchhccchhhccCCCCcchhheehhhhhhh
Confidence 456789999999999999999763 3 222 111 112222211111 112222344333 4543 99999998877
Q ss_pred CChH-HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEE
Q 017777 272 WSDE-HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQV 350 (366)
Q Consensus 272 ~~~~-~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 350 (366)
+.+. +...+|-++-|.|+|||.++|-|... ...+++.++..-.++....
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~~~------------------------------vl~~v~~i~~~lrW~~~~~ 489 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDTVD------------------------------VLEKVKKIAKSLRWEVRIH 489 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEeccHH------------------------------HHHHHHHHHHhCcceEEEE
Confidence 6543 56689999999999999999966421 1345667777777775443
Q ss_pred EECC---CceeEEEEEe
Q 017777 351 VSSA---FNTYIMEFLK 364 (366)
Q Consensus 351 ~~~~---~~~~vie~~k 364 (366)
.... ....++.++|
T Consensus 490 d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 490 DTEDGPDGPEKILICQK 506 (506)
T ss_pred ecCCCCCCCceEEEEEC
Confidence 3333 2456777776
No 260
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.60 E-value=0.0042 Score=50.20 Aligned_cols=79 Identities=22% Similarity=0.260 Sum_probs=54.3
Q ss_pred EEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCC-CCCCC--CEEEeccccccCChHHHHHHH
Q 017777 205 VVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEHCVKFL 281 (366)
Q Consensus 205 vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~~~~~L 281 (366)
.+-||||.=.+ +|+...+-+. +.+.+.+++.-.++ ++... |+|.+.+++.|+.-++-..++
T Consensus 6 kv~ig~G~~r~-------npgWi~~d~e---------d~~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~al 69 (185)
T COG4627 6 KVKIGAGGKRV-------NPGWIITDVE---------DRPEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSAL 69 (185)
T ss_pred EEEEecccccc-------CCCceeeehh---------cccccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHH
Confidence 46788886433 3555443321 01223334433333 55543 999999999999989999999
Q ss_pred HHHHHhCCCCcEEEEEcc
Q 017777 282 KNCYEALPVNGKVIVAES 299 (366)
Q Consensus 282 ~~~~~~L~pgG~lli~e~ 299 (366)
+.+++.|||||+|-|.-+
T Consensus 70 kechr~Lrp~G~LriAvP 87 (185)
T COG4627 70 KECHRFLRPGGKLRIAVP 87 (185)
T ss_pred HHHHHHhCcCcEEEEEcC
Confidence 999999999999988654
No 261
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.60 E-value=0.014 Score=55.40 Aligned_cols=51 Identities=8% Similarity=0.067 Sum_probs=41.0
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV 255 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 255 (366)
.+|||++||+|.++..+++... +++++|. +.+++.++++ .+++++.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999998888754 7889987 7777766542 478899988754
No 262
>PRK11569 transcriptional repressor IclR; Provisional
Probab=95.58 E-value=0.014 Score=53.21 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=47.8
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKF 115 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~ 115 (366)
+.|++.|.+.+ .|+|+.|||+.+|+ +..-+.|+|..|+..|||+++ .+ .+.|++.+....
T Consensus 31 l~IL~~l~~~~--~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~----~~---~~~Y~lG~~l~~ 90 (274)
T PRK11569 31 LKLLEWIAESN--GSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQV----GE---LGHWAIGAHAFI 90 (274)
T ss_pred HHHHHHHHhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc----CC---CCeEecCHHHHH
Confidence 34566666532 58999999999999 999999999999999999864 11 578999876543
No 263
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.56 E-value=0.069 Score=45.95 Aligned_cols=98 Identities=19% Similarity=0.242 Sum_probs=55.2
Q ss_pred CCeEEEEeCCccHHHHH---HHHhC-CCCeEEEecc--hhHHhhCCCC----CCceEEEccCCCC-----CC----CC-C
Q 017777 202 LNSVVDVGGGIGATLNM---IISKY-PSIKGINFDL--PHVIQDAPAF----PGVEHVGGDMFVS-----VP----KG-D 261 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~---l~~~~-p~~~~~~~D~--~~~~~~a~~~----~~v~~~~~D~~~~-----~~----~~-D 261 (366)
+..|+++|.-.|+.+.- +++.+ ++.+++++|+ ...-..+.+. +||+++.||-.++ .. .. -
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 78999999888876654 44555 7789999997 2222222222 7999999997652 10 12 3
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
++++-..=|.+ +...+.|+.....++||++++|-|...
T Consensus 113 vlVilDs~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 113 VLVILDSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp EEEEESS------SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred eEEEECCCccH--HHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 44444444443 345678999999999999999987754
No 264
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=95.33 E-value=0.019 Score=52.19 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=47.5
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
+.|++.|.+.+ .++|+.|||+.+|+ +..-+.|+|..|+..|||.++ .. .+.|+++....
T Consensus 28 l~IL~~~~~~~--~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~----~~---~~~Y~lG~~l~ 86 (271)
T PRK10163 28 IAILQYLEKSG--GSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQD----SQ---LGWWHIGLGVF 86 (271)
T ss_pred HHHHHHHHhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc----CC---CCeEEecHHHH
Confidence 45666776543 47999999999999 999999999999999999874 11 57899887554
No 265
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=95.31 E-value=0.018 Score=51.97 Aligned_cols=59 Identities=8% Similarity=0.147 Sum_probs=47.8
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKF 115 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~ 115 (366)
+.|++.|... +++|+.|||+.+|+ +..-+.|+|+.|+..|||+++ ++ .++|++.+....
T Consensus 17 l~IL~~l~~~---~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~---~~----~~~Y~lG~~~~~ 75 (257)
T PRK15090 17 FGILQALGEE---REIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQE---GE----SEKYSLTLKLFE 75 (257)
T ss_pred HHHHHHhhcC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc---CC----CCcEEecHHHHH
Confidence 4566666654 48999999999999 999999999999999999974 11 578999976543
No 266
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=95.30 E-value=0.017 Score=41.64 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=43.4
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
|+..+.. ++.+..+|+..+++ +...+.+.|+.|...|+++.. ++.|.+|+.+..++.
T Consensus 11 IL~~l~~----~~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~~~---------~~~Y~lTekG~~~l~ 67 (77)
T PF14947_consen 11 ILKILSK----GGAKKTEIMYKANL----NYSTLKKYLKELEEKGLIKKK---------DGKYRLTEKGKEFLE 67 (77)
T ss_dssp HHHHH-T----T-B-HHHHHTTST------HHHHHHHHHHHHHTTSEEEE---------TTEEEE-HHHHHHHH
T ss_pred HHHHHHc----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCeeCC---------CCEEEECccHHHHHH
Confidence 4555544 58999999999999 999999999999999999752 689999999987663
No 267
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.25 E-value=0.012 Score=50.11 Aligned_cols=94 Identities=18% Similarity=0.124 Sum_probs=60.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC------CCCC-CEEEe
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS------VPKG-DAIFI 265 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~------~~~~-D~i~~ 265 (366)
.+.++||+=||+|.++.+.+.+... +++.+|. +..+...+++ .+++++..|.+.. .... |+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~-~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAK-SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCC-eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 4689999999999999998887543 6888886 6665555432 4688889887641 1223 99988
Q ss_pred ccccccCChHHHHHHHHHHH--HhCCCCcEEEEE
Q 017777 266 KWICHDWSDEHCVKFLKNCY--EALPVNGKVIVA 297 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~--~~L~pgG~lli~ 297 (366)
---... .. ....+|..+. .+|+++|.+++-
T Consensus 121 DPPY~~-~~-~~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 121 DPPYAK-GL-YYEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp --STTS-CH-HHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred CCCccc-ch-HHHHHHHHHHHCCCCCCCEEEEEE
Confidence 644433 21 1356777776 788888766653
No 268
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=95.25 E-value=0.019 Score=40.02 Aligned_cols=62 Identities=21% Similarity=0.393 Sum_probs=41.4
Q ss_pred hhChHHHHh-hcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 42 ELDLLEIIA-KAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 42 ~lglf~~L~-~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
++-++..|. .. ++.+..+||+.+++ +...+.+.++-|...|+|++.. .+.|+. ...|++|+.
T Consensus 5 q~~vL~~l~~~~---~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~-~~~d~R-~~~~~LT~~ 67 (68)
T PF13463_consen 5 QWQVLRALAHSD---GPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKER-DPHDKR-SKRYRLTPA 67 (68)
T ss_dssp HHHHHHHHT--T---S-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEE-ESSCTT-SEEEEE-HH
T ss_pred HHHHHHHHHccC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCcCC-eeEEEeCCC
Confidence 334455555 32 59999999999999 9999999999999999997642 122321 245777765
No 269
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=95.18 E-value=0.061 Score=45.79 Aligned_cols=84 Identities=20% Similarity=0.257 Sum_probs=60.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC---------CCceEEEccCCC-C---------C-CCC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF---------PGVEHVGGDMFV-S---------V-PKG 260 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---------~~v~~~~~D~~~-~---------~-~~~ 260 (366)
+...|+.+|||--....++....++++++.+|+|++++.-++. .+.+++..|+.+ . + +..
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 4459999999999999999998788999999999987654431 236789999986 2 1 112
Q ss_pred -CEEEeccccccCChHHHHHHHHHH
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNC 284 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~ 284 (366)
-++++-.++++++.++...+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 577778899999999988888875
No 270
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.15 E-value=0.21 Score=46.75 Aligned_cols=105 Identities=20% Similarity=0.187 Sum_probs=59.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHh--------C--------CCCeEEEecchhH--HhhCCC----------CCC--ceE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISK--------Y--------PSIKGINFDLPHV--IQDAPA----------FPG--VEH 248 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~--------~--------p~~~~~~~D~~~~--~~~a~~----------~~~--v~~ 248 (366)
..+.-+|+|+||.+|..+..+... + |.+.++.-|+|.- -...+. ... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 456789999999999877764433 1 2345566676321 111111 123 344
Q ss_pred EEccCCC-CCCCC--CEEEeccccccCCh-------------------------------------HHHHHHHHHHHHhC
Q 017777 249 VGGDMFV-SVPKG--DAIFIKWICHDWSD-------------------------------------EHCVKFLKNCYEAL 288 (366)
Q Consensus 249 ~~~D~~~-~~~~~--D~i~~~~~lh~~~~-------------------------------------~~~~~~L~~~~~~L 288 (366)
+++.+.. -+|.. |++++++.||+++. .+...+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 6788887 57766 99999999997742 11223444445567
Q ss_pred CCCcEEEEEccccCC
Q 017777 289 PVNGKVIVAESILPV 303 (366)
Q Consensus 289 ~pgG~lli~e~~~~~ 303 (366)
+|||++++.-...++
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 899999998876655
No 271
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.15 E-value=0.023 Score=50.21 Aligned_cols=99 Identities=17% Similarity=0.158 Sum_probs=62.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----CCCceEEEccCCCCCCC--CCEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----FPGVEHVGGDMFVSVPK--GDAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~~~~~--~D~i~~~~~lh~ 271 (366)
..+.+|+|||||.-=++.-.....|+..++++|+ ...++.... ..+.++...|.....|. .|+.++.-++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 3589999999999999888788888899999998 656555443 25777888899885443 399999999987
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
+..+.. ..--++-+.++ .-.++|..++
T Consensus 184 le~q~~-g~g~~ll~~~~-~~~~vVSfPt 210 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALR-SPHVVVSFPT 210 (251)
T ss_dssp HHHHST-THHHHHHHHSC-ESEEEEEEES
T ss_pred HHHHhc-chHHHHHHHhC-CCeEEEeccc
Confidence 654432 33233344443 2355555544
No 272
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.14 E-value=0.062 Score=51.05 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=67.9
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCC-eEEEecc-hhHHhhCCCC------CCceEEEccCCCC--C--CCCCEEEecccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSI-KGINFDL-PHVIQDAPAF------PGVEHVGGDMFVS--V--PKGDAIFIKWIC 269 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~--~--~~~D~i~~~~~l 269 (366)
..+|||.-||+|..+.+++.+.++. +++..|+ |..++.++++ .++++...|...- . ...|+|.+-- +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 3589999999999999999986544 6888897 7777766542 3577888887752 1 2249998754 3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
..+ ..+|..+.+.+++||.|.+.-
T Consensus 124 -Gs~----~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 -GTP----APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -CCc----HHHHHHHHHhcccCCEEEEEe
Confidence 212 267889999999999999973
No 273
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=95.11 E-value=0.024 Score=51.33 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=50.2
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
-+.|++.|...+ .++|..|||+.+++ +..-+.|+|+.|+..|||+++ .+ ++.|++++....+.
T Consensus 13 al~iL~~l~~~~--~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~----~~---~~~Y~Lg~~~~~l~ 75 (263)
T PRK09834 13 GLMVLRALNRLD--GGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRS----AS---DDSFRLTLKVRQLS 75 (263)
T ss_pred HHHHHHHHHhcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe----cC---CCcEEEcHHHHHHH
Confidence 355677776643 46999999999999 999999999999999999974 11 47899997665444
No 274
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.08 E-value=0.031 Score=42.44 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=27.0
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL 233 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~ 233 (366)
......+|||||.|.+..-|.+ .+.++.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~--EGy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNS--EGYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHh--CCCCcccccc
Confidence 4567899999999999988877 5678899994
No 275
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=95.07 E-value=0.022 Score=40.07 Aligned_cols=43 Identities=9% Similarity=0.170 Sum_probs=36.5
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
|.+.|.+. +..|..|||..+++ ++..++.+|+.|+..|+|.+.
T Consensus 5 i~~~l~~~---~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~~ 47 (69)
T PF09012_consen 5 IRDYLRER---GRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRKV 47 (69)
T ss_dssp HHHHHHHS----SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEEE
T ss_pred HHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 56777776 58999999999999 999999999999999999974
No 276
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=95.02 E-value=0.022 Score=36.53 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=31.7
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
|.|..+||+.+++ +...+.+.|+.|...|+++.
T Consensus 8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~ 40 (48)
T smart00419 8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISR 40 (48)
T ss_pred ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 7899999999999 99999999999999999986
No 277
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=94.97 E-value=0.014 Score=42.33 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=49.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++++|...|... +..+..+|.+.+++ +...+...|+.|...|+|+...+. .++.-...|++|+.++...
T Consensus 1 vRl~Il~~L~~~---~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~~-~~~~p~t~~~lT~~Gr~~~ 69 (80)
T PF13601_consen 1 VRLAILALLYAN---EEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKEF-EGRRPRTWYSLTDKGREAF 69 (80)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE--SSS--EEEEEE-HHHHHHH
T ss_pred CHHHHHHHHhhc---CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEec-cCCCCeEEEEECHHHHHHH
Confidence 467888888875 48999999999999 999999999999999999875221 1110023588888877443
No 278
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=94.90 E-value=0.01 Score=41.52 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=41.0
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.+..++..|-.. ++.|+.|||+.+++ +...+.+.|+-|...|++++.
T Consensus 9 ~E~~vy~~Ll~~---~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~ 55 (68)
T PF01978_consen 9 NEAKVYLALLKN---GPATAEEIAEELGI----SRSTVYRALKSLEEKGLVERE 55 (68)
T ss_dssp HHHHHHHHHHHH---CHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 456677777654 59999999999999 999999999999999999974
No 279
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=94.69 E-value=0.045 Score=44.97 Aligned_cols=57 Identities=23% Similarity=0.225 Sum_probs=44.5
Q ss_pred HHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 48 IIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 48 ~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
.|+..+.+++.|+++||+..++ ++..+++++..|...|+|+-. -|+ +|.|++.+..+
T Consensus 16 ~LA~~~~~~~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~-----rG~-~GGy~Lar~~~ 72 (150)
T COG1959 16 YLALLPGGGPVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSV-----RGK-GGGYRLARPPE 72 (150)
T ss_pred HHHhCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEee-----cCC-CCCccCCCChH
Confidence 3444332348999999999999 999999999999999999853 343 58898885443
No 280
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=94.68 E-value=0.044 Score=43.06 Aligned_cols=47 Identities=11% Similarity=0.214 Sum_probs=39.8
Q ss_pred hhChHHHHh-hcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccccc
Q 017777 42 ELDLLEIIA-KAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSL 95 (366)
Q Consensus 42 ~lglf~~L~-~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 95 (366)
+..+|-.|- .+ +|.|+++||+.++. +..-+.+-|+-|...|++.+.+
T Consensus 29 Dv~v~~~LL~~~---~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Rek 76 (126)
T COG3355 29 DVEVYKALLEEN---GPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVEREK 76 (126)
T ss_pred HHHHHHHHHhhc---CCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeeee
Confidence 445566665 33 69999999999999 9999999999999999999853
No 281
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=94.56 E-value=0.037 Score=38.29 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=33.0
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.++|..+||+.+++ ++..+.+.|+.|...|+|...
T Consensus 24 ~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~ 58 (67)
T cd00092 24 LPLTRQEIADYLGL----TRETVSRTLKELEEEGLISRR 58 (67)
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 58999999999999 999999999999999999963
No 282
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.52 E-value=0.078 Score=47.73 Aligned_cols=100 Identities=21% Similarity=0.246 Sum_probs=67.2
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCe-EEEecc-hhHHhhCCCC----------CCceEEEccCCC---CCCC--CC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIK-GINFDL-PHVIQDAPAF----------PGVEHVGGDMFV---SVPK--GD 261 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~---~~~~--~D 261 (366)
..++.++|-||+|.|.+....++. +.+. +..+|+ ..+++..+++ ++|..+.||-+. ..++ .|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999887765 5553 455565 5555554442 689999998765 3333 38
Q ss_pred EEEeccccccCChHH--HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 262 AIFIKWICHDWSDEH--CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~--~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+|+.-..=-..|... ...+...+.++|||||++++...
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 887632211111111 23677788999999999998763
No 283
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.49 E-value=0.14 Score=49.64 Aligned_cols=98 Identities=20% Similarity=0.208 Sum_probs=65.1
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC--CCC---
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV--SVP--- 258 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~~~--- 258 (366)
...+.+. ..+..+++|+=||.|.++..++++ ..+++++++ +++++.|+++ .+++|+.+|..+ +..
T Consensus 284 ~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~ 360 (432)
T COG2265 284 TALEWLE-LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEG 360 (432)
T ss_pred HHHHHHh-hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcccc
Confidence 4444443 456789999999999999999964 346888887 7777776643 579999999876 222
Q ss_pred CC-CEEEeccccccCChHHHH-HHHHHHHHhCCCCcEEEEE
Q 017777 259 KG-DAIFIKWICHDWSDEHCV-KFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 259 ~~-D~i~~~~~lh~~~~~~~~-~~L~~~~~~L~pgG~lli~ 297 (366)
.. |+|+.- -|..-+. .+++.+.+ ++|...++|.
T Consensus 361 ~~~d~VvvD-----PPR~G~~~~~lk~l~~-~~p~~IvYVS 395 (432)
T COG2265 361 YKPDVVVVD-----PPRAGADREVLKQLAK-LKPKRIVYVS 395 (432)
T ss_pred CCCCEEEEC-----CCCCCCCHHHHHHHHh-cCCCcEEEEe
Confidence 12 888862 2222222 44555444 5677777774
No 284
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=94.40 E-value=0.031 Score=38.26 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=37.0
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.|.+.|.... +|.+..|||+.+|+ +....+++|..|+..|.++..
T Consensus 4 ~Il~~i~~~~--~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~~ 48 (62)
T PF04703_consen 4 KILEYIKEQN--GPLKTREIADALGL----SIYQARYYLEKLEKEGKVERS 48 (62)
T ss_dssp CHHHHHHHHT--S-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEEE
T ss_pred HHHHHHHHcC--CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 4666777621 59999999999999 999999999999999999864
No 285
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=94.39 E-value=0.054 Score=44.11 Aligned_cols=68 Identities=21% Similarity=0.196 Sum_probs=48.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.+..++..|... ++.|..+||+.+++ ++..+.+.++-|+..|+|.+.. .+.|+. .-...+|+.+..+.
T Consensus 41 ~q~~vL~~l~~~---~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~-~~~DrR-~~~l~LT~~G~~~~ 108 (144)
T PRK11512 41 AQFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP-NPNDKR-GVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc-CcccCC-eeEeEEChhHHHHH
Confidence 344557777654 48999999999999 9999999999999999999752 112211 12356666665544
No 286
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=94.12 E-value=0.03 Score=38.17 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=39.4
Q ss_pred HhhChHHHHhhcCCCCC--CCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAF--MSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~--~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.++.++..|...+ + .|..|||+.+++ ++..+.+.++.|+..|+|++.
T Consensus 6 ~q~~vL~~l~~~~---~~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~ 54 (62)
T PF12802_consen 6 SQFRVLMALARHP---GEELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERE 54 (62)
T ss_dssp HHHHHHHHHHHST---TSGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCC---CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 3556677777753 4 899999999999 999999999999999999975
No 287
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=94.11 E-value=0.13 Score=47.29 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=52.3
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV 255 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~ 255 (366)
++++++.+. ..++..++|.=+|.|..+..+++..|+.+++++|. |.+++.+++. .|+.++.+++.+
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 456777765 55667999999999999999999988789999998 8887776542 467777777653
No 288
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.08 E-value=0.32 Score=45.33 Aligned_cols=96 Identities=22% Similarity=0.156 Sum_probs=73.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--CC-CCCCEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--SV-PKGDAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~-~~~D~i~~~~~l 269 (366)
.+.+|||.=+|.|.++..++....- +++.+|+ |..++..+++ .++..+.+|..+ +. +.+|-|++...-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 4789999999999999998886433 4999998 8887766542 458899999887 23 345888876543
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
...+++..+.+.+++||.+...+....+
T Consensus 267 ------~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 267 ------SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ------cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 1236788888889999999998887654
No 289
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=94.00 E-value=0.058 Score=46.75 Aligned_cols=63 Identities=21% Similarity=0.330 Sum_probs=48.2
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCC--ccccccccchhchh
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDG--KVERLYGLAPVCKF 115 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g--~~~~~y~~t~~~~~ 115 (366)
.|...|.+. +|+|+.|||+++|+ ++..+++.|+.|++.|+++.. ....| .-.-.|++|..+..
T Consensus 15 ~il~lL~~~---g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~--~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 15 RILELLKKS---GPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVE--RQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHHhcc---CCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeee--eccCCCCCCceeeeecccchh
Confidence 466677766 69999999999999 999999999999999999864 11211 11235888877665
No 290
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=93.97 E-value=0.089 Score=41.20 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=53.7
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
+..+..++..|... ++.|..+||+.+++ +...+.+.++-|+..|+|++.. .+.|.. .-.+.+|+.+..+..
T Consensus 27 t~~q~~iL~~l~~~---~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~-~~~D~R-~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 27 TEQQWRILRILAEQ---GSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLK-ASNDQR-RVYISLTPKGQALYA 97 (118)
T ss_pred CHHHHHHHHHHHHc---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHhHHHHHH
Confidence 34455688888775 48999999999999 9999999999999999999742 112211 136888888876664
No 291
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=93.92 E-value=0.077 Score=39.81 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=49.4
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++-|+..|+|+... ...++ ....|.+|+.+..+.
T Consensus 11 ~~~~il~~l~~~---~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~-~~~~~-r~~~~~lT~~g~~~~ 78 (101)
T smart00347 11 TQFLVLRILYEE---GPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLP-SPEDR-RSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecC-CCCCC-CeEEEEECHhHHHHH
Confidence 356677888765 47999999999999 9999999999999999998641 00111 123566676665444
No 292
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=93.88 E-value=0.084 Score=42.22 Aligned_cols=48 Identities=27% Similarity=0.305 Sum_probs=39.2
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
+|.|.++||+.+++ ++..++++|+.|...|+|... .|. ++.|.++...
T Consensus 24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~-----~g~-~ggy~l~~~~ 71 (132)
T TIGR00738 24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESV-----RGP-GGGYRLARPP 71 (132)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEec-----cCC-CCCccCCCCH
Confidence 48999999999999 999999999999999999852 121 3567776443
No 293
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=93.84 E-value=0.1 Score=45.04 Aligned_cols=56 Identities=13% Similarity=0.274 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 31 SVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 31 ~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+-+..++...++..|++.|... +|+.+.|||+++++ ++.-+..-+..|+..|++..
T Consensus 14 ~dv~kalaS~vRv~Il~lL~~k---~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT 69 (308)
T COG4189 14 LDVLKALASKVRVAILQLLHRK---GPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRT 69 (308)
T ss_pred chHHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceee
Confidence 3456788899999999999987 59999999999999 99999999999999999975
No 294
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=93.71 E-value=0.088 Score=45.63 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=49.5
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..|+..|... ++.|..+||+.+++ ++..+++.|+.|...|+|+........|.-.-.|.+|+.+....
T Consensus 4 ~~IL~~L~~~---~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 4 EDILSYLLKQ---GQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence 4577777765 58999999999999 99999999999999999986410011121123478887776544
No 295
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=93.69 E-value=0.11 Score=43.39 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=39.4
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
+|.|+++||+++++ ++..++++|..|...|+|... -|. ++.|.+..-
T Consensus 24 ~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~-----rG~-~GGy~Lar~ 70 (164)
T PRK10857 24 GPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSV-----RGP-GGGYLLGKD 70 (164)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC-----CCC-CCCeeccCC
Confidence 48999999999999 999999999999999999952 122 467888743
No 296
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=93.67 E-value=0.079 Score=48.31 Aligned_cols=98 Identities=13% Similarity=0.162 Sum_probs=66.9
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCCCC------CCCCEEEe
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFVSV------PKGDAIFI 265 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~------~~~D~i~~ 265 (366)
...+|||+=|=+|.++...+.. .-.+++.+|. ..+++.++++ .++++++.|+++.. ...|+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999977653 3337899997 6667666542 57899999998621 22399987
Q ss_pred c---cccccCC-hHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 266 K---WICHDWS-DEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 266 ~---~~lh~~~-~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
- +.=..+. ..+...+++.+.++|+|||.|+++..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 2 1111121 12456889999999999999887653
No 297
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=93.67 E-value=0.43 Score=42.41 Aligned_cols=99 Identities=16% Similarity=0.105 Sum_probs=62.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC------------CCceEEEccCCCC------CCC-CC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF------------PGVEHVGGDMFVS------VPK-GD 261 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------------~~v~~~~~D~~~~------~~~-~D 261 (366)
...+||++|+|+|..+... ......+++.-|.+..++..+.. ..+.+...+-..+ .+. .|
T Consensus 86 ~~~~vlELGsGtglvG~~a-a~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILA-ALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHH-HHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 4678999999999665544 34466788888876665443221 1344433332221 233 59
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
+|+.+.+++.-. ....+++.++..|..++.+++.-...+
T Consensus 165 lilasDvvy~~~--~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 165 LILASDVVYEEE--SFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEEeeeeecCC--cchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 999999998633 234678888888988886666555444
No 298
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=93.66 E-value=0.072 Score=35.17 Aligned_cols=43 Identities=21% Similarity=0.321 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHH
Q 017777 33 LPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLL 85 (366)
Q Consensus 33 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L 85 (366)
.-.+|.+|++.|-||.=. ..|..|||+.+|+ ++..+...||-.
T Consensus 5 Q~e~L~~A~~~GYfd~PR------~~tl~elA~~lgi----s~st~~~~LRra 47 (53)
T PF04967_consen 5 QREILKAAYELGYFDVPR------RITLEELAEELGI----SKSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHHcCCCCCCC------cCCHHHHHHHhCC----CHHHHHHHHHHH
Confidence 346899999999999843 5799999999999 777777766643
No 299
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=93.66 E-value=0.098 Score=40.97 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 30 ASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 30 ~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
++-..+.+-+--.+.|++.|... +|.|+.|+|+..|- +...+.|-|+.|+-.|++...
T Consensus 54 Sye~la~vLsp~nleLl~~Ia~~---~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe 111 (144)
T COG4190 54 SYEDLARVLSPRNLELLELIAQE---EPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE 111 (144)
T ss_pred cHHHHHHHhChhHHHHHHHHHhc---CcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence 34445566677788899999987 59999999999999 999999999999999999973
No 300
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=93.64 E-value=0.08 Score=42.65 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=39.5
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
++.|+++||+.+++ ++..++++|+.|...|+|... .|+ .|.|.++...
T Consensus 24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~-----~G~-~Ggy~l~~~~ 71 (135)
T TIGR02010 24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSV-----RGP-GGGYQLGRPA 71 (135)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE-----eCC-CCCEeccCCH
Confidence 48999999999999 999999999999999999842 122 4668877543
No 301
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=93.62 E-value=0.39 Score=40.69 Aligned_cols=97 Identities=13% Similarity=0.044 Sum_probs=62.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC--CC----CCCCEEEec
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV--SV----PKGDAIFIK 266 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~--~~----~~~D~i~~~ 266 (366)
.+.++||+=+|+|.++.+.+.+... +++.+|. ..++...++ ..+++++..|... .. +..|+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~-~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAA-RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCc-eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 4689999999999999999987654 6777775 444433332 3678888888763 11 124999987
Q ss_pred ccccc-CChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 267 WICHD-WSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 267 ~~lh~-~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
--++. +-+.+...++-.-..+|+|+|.+++-.
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 66652 111122222222457799999887743
No 302
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.48 E-value=0.43 Score=46.48 Aligned_cols=127 Identities=17% Similarity=0.240 Sum_probs=82.1
Q ss_pred CchhhcccCchHHHHHHHHhhhcchhhHHHHHHhccCCCC--CCeEEEEeCCccHHHHHHHHh----CCCCeEEEecc-h
Q 017777 162 NAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEG--LNSVVDVGGGIGATLNMIISK----YPSIKGINFDL-P 234 (366)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~ 234 (366)
..|+.+++|+-....|.++. ...+.+..++.+. ...|+-+|+|.|-+..+.++. ...++++.++- |
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 34666777876666666644 3356666553333 568899999999877665544 34567777774 6
Q ss_pred hHHhhCCC------CCCceEEEccCCC-CCC--CCCEEEeccccccCChHH-HHHHHHHHHHhCCCCcEEEE
Q 017777 235 HVIQDAPA------FPGVEHVGGDMFV-SVP--KGDAIFIKWICHDWSDEH-CVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 235 ~~~~~a~~------~~~v~~~~~D~~~-~~~--~~D~i~~~~~lh~~~~~~-~~~~L~~~~~~L~pgG~lli 296 (366)
.++-..+. ..+|+++..||.+ ..| +.|++++ ..|--|.|.+ ..+-|..+-+.|||+|.-|=
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 55443332 1689999999988 444 2387764 3444444433 23558888899999976554
No 303
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=93.36 E-value=0.043 Score=37.03 Aligned_cols=46 Identities=15% Similarity=0.361 Sum_probs=39.2
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
++.++..|.+. ++.+..+||+.+++ ++..+.++++-|+..|++++.
T Consensus 5 q~~iL~~l~~~---~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~ 50 (59)
T PF01047_consen 5 QFRILRILYEN---GGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERE 50 (59)
T ss_dssp HHHHHHHHHHH---SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEec
Confidence 45566667776 48999999999999 999999999999999999974
No 304
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.32 E-value=0.64 Score=43.84 Aligned_cols=109 Identities=17% Similarity=0.094 Sum_probs=73.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCC---------------------------------------eEE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSI---------------------------------------KGI 229 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~---------------------------------------~~~ 229 (366)
+..++. +.+|.+...++|==||+|.++++.+...+++ .++
T Consensus 180 AaAil~-lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 180 AAAILL-LAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHH-HcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 334444 3347777899999999999999988777532 166
Q ss_pred Eecc-hhHHhhCCCC-------CCceEEEccCCC-CCC--CCCEEEeccccc-cCChHHH-----HHHHHHHHHhCCCCc
Q 017777 230 NFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVP--KGDAIFIKWICH-DWSDEHC-----VKFLKNCYEALPVNG 292 (366)
Q Consensus 230 ~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~--~~D~i~~~~~lh-~~~~~~~-----~~~L~~~~~~L~pgG 292 (366)
++|+ +.+++.|+.+ +.|+|.++|+.. ..+ +.|+|+++--.- -+.++.. ..+.+.+++.++--+
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 8998 8888877653 569999999876 333 448888864331 1222221 245566667777666
Q ss_pred EEEEEc
Q 017777 293 KVIVAE 298 (366)
Q Consensus 293 ~lli~e 298 (366)
+.+++.
T Consensus 339 ~~v~tt 344 (381)
T COG0116 339 RYVFTT 344 (381)
T ss_pred eEEEEc
Confidence 777654
No 305
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.32 E-value=0.35 Score=46.77 Aligned_cols=101 Identities=21% Similarity=0.179 Sum_probs=71.8
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhh-----CCCCCCceEEEccCCC-CCCC--CCEEEeccccccCC
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQD-----APAFPGVEHVGGDMFV-SVPK--GDAIFIKWICHDWS 273 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-----a~~~~~v~~~~~D~~~-~~~~--~D~i~~~~~lh~~~ 273 (366)
-+++-+|||.-.+...+-+.. --.++-+|. +.+++. ++..+...+...|+.. .++. .|+++....++.+-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 389999999999888877653 224566665 333332 2334678888999887 6764 39999999998752
Q ss_pred -hH-------HHHHHHHHHHHhCCCCcEEEEEccc--cCCC
Q 017777 274 -DE-------HCVKFLKNCYEALPVNGKVIVAESI--LPVT 304 (366)
Q Consensus 274 -~~-------~~~~~L~~~~~~L~pgG~lli~e~~--~~~~ 304 (366)
++ .....+..+.++|+|||+.+.+... .+..
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~ 169 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQG 169 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCC
Confidence 22 2335689999999999998888773 4444
No 306
>KOG2730 consensus Methylase [General function prediction only]
Probab=93.22 E-value=0.071 Score=45.93 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=56.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC---CCCC-CEEEeccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS---VPKG-DAIFIKWI 268 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~~~~-D~i~~~~~ 268 (366)
....|+|.-||.|+.+..++..+|. ++.+|+ |.-+..|+.+ +||.|++||+++- +.-. |.+.+...
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 4678999999999999999998875 566665 6666666653 6999999999872 2111 33333222
Q ss_pred cccCC-hHHHHHHHHHHHHhCCCCc
Q 017777 269 CHDWS-DEHCVKFLKNCYEALPVNG 292 (366)
Q Consensus 269 lh~~~-~~~~~~~L~~~~~~L~pgG 292 (366)
--.|+ +...+.-+-.+...+.|.|
T Consensus 172 sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 172 SPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCCCCcchhhhhhhhhhhhcchhH
Confidence 22232 2233344455555566654
No 307
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=93.01 E-value=0.19 Score=46.17 Aligned_cols=65 Identities=23% Similarity=0.269 Sum_probs=47.0
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMF 254 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~ 254 (366)
+.++++.+. ..+...++|.=-|.|+.+..+++.+|+.+++++|. |.+++.+++. +|+.++..+|.
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 556777776 66778999999999999999999999999999998 8888766542 56777666654
No 308
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.01 E-value=0.04 Score=42.12 Aligned_cols=85 Identities=16% Similarity=0.301 Sum_probs=42.9
Q ss_pred CEEEecccc---c-cCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHH
Q 017777 261 DAIFIKWIC---H-DWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEF 336 (366)
Q Consensus 261 D~i~~~~~l---h-~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 336 (366)
|+|+|..|- | +|.|+-...+++++++.|+|||.+++=-.-........ .......-.+ ......++++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~---~~~~~~~~n~-----~~i~lrP~~F 74 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAK---RLSEEIRENY-----KSIKLRPDQF 74 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTT---TS-HHHHHHH-----HH----GGGH
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHh---hhhHHHHhHH-----hceEEChHHH
Confidence 788776554 2 45788889999999999999999988321111100000 0000000001 1112335567
Q ss_pred HHHHHH--cCCceeEEEEC
Q 017777 337 RALAKA--AGFQGFQVVSS 353 (366)
Q Consensus 337 ~~ll~~--aGf~~~~~~~~ 353 (366)
.+.|.+ .||+.++....
T Consensus 75 ~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 75 EDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp HHHHTSTTT---EEEEE--
T ss_pred HHHHHhcccceEEEEEccc
Confidence 887777 69998875554
No 309
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.77 E-value=0.27 Score=46.13 Aligned_cols=109 Identities=16% Similarity=0.319 Sum_probs=73.6
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc---hhHHhhCC-------------CCCCceEEEccCC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL---PHVIQDAP-------------AFPGVEHVGGDMF 254 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~-------------~~~~v~~~~~D~~ 254 (366)
.+.+.+. ........|+|+|.|.+...++.....-.-+|+.+ |.-+.... +...++++.+++.
T Consensus 183 si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 183 SIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 3444444 56778899999999999887766544434455553 32222211 1245888899988
Q ss_pred CC------CCCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 255 VS------VPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 255 ~~------~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
.+ .+++++|+.+++... ++...=++++..-+++|-+++-.+++.+.
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~Fd---p~L~lr~~eil~~ck~gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAFD---PELKLRSKEILQKCKDGTRIISSKPLVPR 313 (419)
T ss_pred CHHHHHHHhhcceEEEEecccCC---HHHHHhhHHHHhhCCCcceEecccccccc
Confidence 73 245699999988864 33333455888889999999999987763
No 310
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=92.75 E-value=0.16 Score=45.30 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=58.5
Q ss_pred HHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchh
Q 017777 36 VLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKF 115 (366)
Q Consensus 36 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~ 115 (366)
++....+.+|+=.|.+ ||.|.+||-..+++ ++..+..-++-|...|++.++ ++.|++|.++..
T Consensus 9 if~SekRk~lLllL~e----gPkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~~---------~~~Y~LS~~G~i 71 (260)
T COG4742 9 LFLSEKRKDLLLLLKE----GPKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQE---------GDRYSLSSLGKI 71 (260)
T ss_pred HHccHHHHHHHHHHHh----CCCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEec---------CCEEEecchHHH
Confidence 4556778889999998 59999999999999 999999999999999999973 699999999887
Q ss_pred hhc
Q 017777 116 LTK 118 (366)
Q Consensus 116 l~~ 118 (366)
++.
T Consensus 72 iv~ 74 (260)
T COG4742 72 IVE 74 (260)
T ss_pred HHH
Confidence 774
No 311
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.59 E-value=0.31 Score=39.31 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=67.4
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC-CCCCC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV-SVPKG 260 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~~~~ 260 (366)
++++..+. -.+..+.+|+|.|.|....+.++.. -...+++++ |..+..++- ..+.+|...|+++ +..++
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 34555444 3445799999999999887666543 345677877 555544432 1678899999998 77665
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
..++.+.+=.. ...+-.+++.-|+.+.+++-.-+-.|.
T Consensus 140 ~~vviFgaes~-----m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 140 RNVVIFGAESV-----MPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred ceEEEeehHHH-----HhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 22222222111 124456677778888888887665544
No 312
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=92.57 E-value=0.18 Score=40.99 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=43.0
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.++.+||+.+++ +++.+.+.++.|...|+|... . ...|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~~----~----~~~i~LT~~G~~~a 70 (142)
T PRK03902 21 GYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIYE----K----YRGLVLTPKGKKIG 70 (142)
T ss_pred CCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEEe----c----CceEEECHHHHHHH
Confidence 58899999999999 999999999999999999853 1 36789998887544
No 313
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=92.46 E-value=0.26 Score=41.67 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=40.8
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
...|++.|... |++|.++||..+|+ +...+++.|..|...|++..
T Consensus 24 ~~~Vl~~L~~~---g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~ 68 (178)
T PRK06266 24 GFEVLKALIKK---GEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADY 68 (178)
T ss_pred HhHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 34589999886 59999999999999 99999999999999999985
No 314
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=92.46 E-value=0.15 Score=34.31 Aligned_cols=44 Identities=18% Similarity=0.334 Sum_probs=39.4
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.|++.|.+. +..|++|||+.+++ ++.-++|=|..|+..|++.+.
T Consensus 4 ~Il~~l~~~---~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r~ 47 (57)
T PF08220_consen 4 QILELLKEK---GKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKRT 47 (57)
T ss_pred HHHHHHHHc---CCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 367778876 59999999999999 999999999999999999874
No 315
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.38 E-value=0.28 Score=42.64 Aligned_cols=101 Identities=26% Similarity=0.337 Sum_probs=69.4
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhC----C-C-C---eEEEecchhHHhhCCCCCCceEEEccCCCC------
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKY----P-S-I---KGINFDLPHVIQDAPAFPGVEHVGGDMFVS------ 256 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p-~-~---~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~------ 256 (366)
+-+.+.-+.+..+++|+-...|.++.-|.++. + . - .++.+|+..|.. .++|..+++|+..+
T Consensus 32 ideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 32 IDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHH
Confidence 33344435567899999999999988877764 2 1 1 278889866532 46788889998762
Q ss_pred ---CC--CCCEEEec-----cccccCCh----HHHHHHHHHHHHhCCCCcEEEE
Q 017777 257 ---VP--KGDAIFIK-----WICHDWSD----EHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 257 ---~~--~~D~i~~~-----~~lh~~~~----~~~~~~L~~~~~~L~pgG~lli 296 (366)
+. .+|+|++- --+|.++. +-....|.-...+|+|||.++-
T Consensus 108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 22 23999984 45677642 1234567777889999999875
No 316
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=92.36 E-value=0.2 Score=32.48 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=36.9
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+++.|.+. ++.+..+||+.+++ ++.-+.+.|..|...|++..
T Consensus 5 il~~l~~~---~~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~ 46 (53)
T smart00420 5 ILELLAQQ---GKVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTR 46 (53)
T ss_pred HHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 55666654 48999999999999 99999999999999999986
No 317
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=91.90 E-value=0.73 Score=43.93 Aligned_cols=43 Identities=26% Similarity=0.403 Sum_probs=30.9
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-------CCCeEEEecc
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-------PSIKGINFDL 233 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~ 233 (366)
..|++.+. -.+..+|+|+|.|.|.--..|.+.+ |.+++|+++.
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~ 149 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGP 149 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccC
Confidence 35677666 4467899999999997444444442 7788999986
No 318
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=91.85 E-value=0.2 Score=38.44 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=41.6
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|+..|... ++.|..+||+.+|+ ++..+++.++.|...|++..
T Consensus 4 ~D~~il~~L~~~---~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~~ 49 (108)
T smart00344 4 IDRKILEELQKD---ARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIKG 49 (108)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeec
Confidence 467788888886 58999999999999 99999999999999999984
No 319
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=91.84 E-value=0.15 Score=41.36 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=38.7
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
.+.+.++||+.+++ ++..+++.|..|...|+|+.. .|+ ++.|.+..
T Consensus 24 ~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~-----~G~-~GG~~l~~ 69 (141)
T PRK11014 24 RMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAV-----RGK-NGGIRLGK 69 (141)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEe-----cCC-CCCeeecC
Confidence 47899999999999 999999999999999999863 332 46777764
No 320
>PRK11050 manganese transport regulator MntR; Provisional
Probab=91.66 E-value=0.94 Score=37.24 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccC
Q 017777 19 EANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNL 98 (366)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 98 (366)
+.++.+...-.....-.++. -|+..+... ++.+..+||+.+++ ++..+.++++.|...|+|...
T Consensus 21 ~~~~~~~~~~~~~~~e~~l~-----~I~~~l~~~---~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~---- 84 (152)
T PRK11050 21 EGFRQVREAHRRELIEDYVE-----LIADLIAEV---GEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMR---- 84 (152)
T ss_pred HHHHHHHHHHhHHHHHHHHH-----HHHHHHHhc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe----
Confidence 35555555554444333332 355566554 48999999999999 999999999999999999863
Q ss_pred CCCccccccccchhchhhh
Q 017777 99 PDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 99 ~~g~~~~~y~~t~~~~~l~ 117 (366)
+ ...+.+|+.+..+.
T Consensus 85 -~---~~~v~LT~~G~~l~ 99 (152)
T PRK11050 85 -P---YRGVFLTPEGEKLA 99 (152)
T ss_pred -c---CCceEECchHHHHH
Confidence 1 24567777665544
No 321
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=91.60 E-value=0.18 Score=40.18 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=37.9
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
++.++.|||+.+++ ++..+.+.|+.|...|++... .|. .+.|.+.+
T Consensus 24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~-----~g~-~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSK-----RGV-EGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEec-----CCC-CCChhhcC
Confidence 58999999999999 999999999999999999852 121 35677754
No 322
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=91.33 E-value=0.19 Score=37.25 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=47.0
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
|+..|.. ||.+..||.+.+ ++ ++..|.+-|+.|...|+|++... +. ....-.|++|+.+..+..
T Consensus 10 IL~~l~~----g~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~-~~-~p~~v~Y~LT~~G~~l~~ 74 (90)
T PF01638_consen 10 ILRALFQ----GPMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVY-PE-VPPRVEYSLTEKGKELLP 74 (90)
T ss_dssp HHHHHTT----SSEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEE-SS-SSSEEEEEE-HHHHHHHH
T ss_pred HHHHHHh----CCCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhcccc-cC-CCCCCccCCCcCHHHHHH
Confidence 4555666 599999999999 89 99999999999999999987521 11 001246999998887663
No 323
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=91.31 E-value=0.31 Score=33.87 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=43.4
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCC-CCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNP-DAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~-~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
|++.|.+.+ +|++..+|++.+..+-- ..+..+++.|++|...|++.+. | ...+.+|..+.
T Consensus 3 IL~~L~~~~--~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~------g--~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESD--KPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKV------G--RQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCcccc------C--CcccccCHHHH
Confidence 566777654 79999999999987321 1468899999999999977742 1 23456776554
No 324
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=91.13 E-value=0.32 Score=40.06 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=44.7
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
++.+..+||+.+++ .++-+..+++-|...|+++.. . .+.+.+|+.+...+.
T Consensus 23 ~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~~----~----y~gi~LT~~G~~~a~ 73 (154)
T COG1321 23 GFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEYE----P----YGGVTLTEKGREKAK 73 (154)
T ss_pred CcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEEe----c----CCCeEEChhhHHHHH
Confidence 69999999999999 999999999999999999984 1 477999988876553
No 325
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=91.07 E-value=0.23 Score=40.93 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=40.6
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
.+.|+++||+..++ ++..++++|..|...|+|+-. -|+ .|.|.++...
T Consensus 23 ~~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~-----rG~-~GGy~La~~p 70 (153)
T PRK11920 23 KLSRIPEIARAYGV----SELFLFKILQPLVEAGLVETV-----RGR-NGGVRLGRPA 70 (153)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee-----cCC-CCCeeecCCH
Confidence 47899999999999 999999999999999999853 243 5788887543
No 326
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=91.07 E-value=0.28 Score=47.64 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=43.0
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV 255 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 255 (366)
++....+||+=||||.++..+++.. .+++++.+ |+.++.|+.+ .+.+|+++-..+
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 6677999999999999999999854 46777765 7777777653 678999984333
No 327
>PRK06474 hypothetical protein; Provisional
Probab=90.90 E-value=0.32 Score=41.19 Aligned_cols=75 Identities=12% Similarity=0.246 Sum_probs=54.2
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
..+|.-..++.|++.|...+ .+.|+.+|++.+ ++ +..-+.|.|+.|+..|+|....+...-|..+..|+++..
T Consensus 5 ~~~La~p~R~~Il~~L~~~~--~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~ 78 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNK--EGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEE 78 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCC--CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccc
Confidence 34666678889999998753 249999999999 67 788899999999999999975211001111346777775
Q ss_pred ch
Q 017777 113 CK 114 (366)
Q Consensus 113 ~~ 114 (366)
+-
T Consensus 79 ~~ 80 (178)
T PRK06474 79 DA 80 (178)
T ss_pred ee
Confidence 53
No 328
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=90.67 E-value=0.21 Score=47.19 Aligned_cols=62 Identities=24% Similarity=0.295 Sum_probs=42.1
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDM 253 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~ 253 (366)
.++.+.+.++ ..+. .|||+=||.|.++..|+.... ++++++. +++++.|+++ .+++|+.++.
T Consensus 185 l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 185 LYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 3445555555 3433 799999999999999988654 6888886 7777777642 6789987654
No 329
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=90.63 E-value=2.1 Score=39.96 Aligned_cols=93 Identities=16% Similarity=0.098 Sum_probs=64.3
Q ss_pred CCCCCeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEcc---CCCCCCC-CCEEEeccccccC
Q 017777 199 FEGLNSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGD---MFVSVPK-GDAIFIKWICHDW 272 (366)
Q Consensus 199 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D---~~~~~~~-~D~i~~~~~lh~~ 272 (366)
..+..+|+=+|+| .|..+.++++... .+++.+|. ++-.+.+++...-.++... ..+...+ .|+|+..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 4457788888876 6678888999876 89999998 6667777766555555533 2222222 477765433 1
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
..+....+.|++||+++++-...
T Consensus 240 ------~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhcCCEEEEECCCC
Confidence 34777788999999999988763
No 330
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=90.60 E-value=2.3 Score=40.23 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=68.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCC--CeEEEecc-hhHHhhC----CCC--CCceEEEccCCC---CCCC---CCEE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPS--IKGINFDL-PHVIQDA----PAF--PGVEHVGGDMFV---SVPK---GDAI 263 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a----~~~--~~v~~~~~D~~~---~~~~---~D~i 263 (366)
...+.+|||.-++.|.=+..+++..++ ..++.+|. +.-++.. ++. .++..+..|... ..+. .|.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 566799999999999999999998876 44578886 3333332 221 446677766542 1221 3777
Q ss_pred Ee------ccccc-------cCChHH-------HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 264 FI------KWICH-------DWSDEH-------CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 264 ~~------~~~lh-------~~~~~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
++ ..+++ .++..+ -.++|+.+.+.|||||.|+-..-..
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 65 34443 333222 2589999999999999999877544
No 331
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=90.55 E-value=0.4 Score=36.97 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=40.6
Q ss_pred HHhhChHHHHh--hcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 40 AIELDLLEIIA--KAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 40 a~~lglf~~L~--~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..++.++..|. .. ..++.|..+||+.+++ ++..+.+.++.|+..|+|.+.
T Consensus 25 ~~q~~vL~~l~~~~~-~~~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~ 76 (109)
T TIGR01889 25 LEELLILYYLGKLEN-NEGKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKE 76 (109)
T ss_pred HHHHHHHHHHHhhhc-cCCcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecc
Confidence 44556666666 21 1158999999999999 999999999999999999975
No 332
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.30 E-value=0.5 Score=44.98 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=51.8
Q ss_pred CCceEEEccCCC---CCCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 244 PGVEHVGGDMFV---SVPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 244 ~~v~~~~~D~~~---~~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
++|+++.+++.+ ..|.+ |.+++...+.++++++..+.++.+.+.++|||+++.-....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 789999998876 34443 9999999999999999999999999999999999998776543
No 333
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=90.18 E-value=0.18 Score=29.39 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=26.0
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVL 91 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l 91 (366)
|+|-+|||+.+|+ .+.-+.|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence 6789999999999 999999999999998875
No 334
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=89.89 E-value=2.1 Score=34.64 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=46.9
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
-++..|...+ ++.|..+||+.+++ ++..+.+.++-|+..|+|++.. .+.|.. .-...+|+.+..+.
T Consensus 35 ~vL~~l~~~~--~~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~~~ 100 (144)
T PRK03573 35 VTLHNIHQLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQT-CASDRR-AKRIKLTEKAEPLI 100 (144)
T ss_pred HHHHHHHHcC--CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeec-CCCCcC-eeeeEEChHHHHHH
Confidence 3566666532 36899999999999 9999999999999999999752 112211 12466776666555
No 335
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=89.74 E-value=0.39 Score=41.60 Aligned_cols=59 Identities=27% Similarity=0.340 Sum_probs=46.7
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
.++.++..|.+. ++.+..+||+.+++ ++.-+.+.|+.|...|++.+.. . . ...|.+|+.
T Consensus 144 ~~~~IL~~l~~~---g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~---~--r-~~~~~lT~~ 202 (203)
T TIGR01884 144 EELKVLEVLKAE---GEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKG---R--K-GKRYSLTKL 202 (203)
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc---C--C-ccEEEeCCC
Confidence 355677788775 48899999999999 9999999999999999999741 0 0 356777654
No 336
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=89.59 E-value=0.47 Score=33.84 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=38.1
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
|=|.|... |..+..+||..+++ +++.++.+|..++..|-+++.
T Consensus 7 lRd~l~~~---gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkverv 49 (78)
T PRK15431 7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_pred HHHHHHHc---CcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 34667765 59999999999999 999999999999999999974
No 337
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=89.51 E-value=0.33 Score=32.97 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=32.2
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
++.+..+||+.+++ .++-+..+++-|...|+++..
T Consensus 21 ~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~ 55 (60)
T PF01325_consen 21 GPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE 55 (60)
T ss_dssp SSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence 69999999999999 999999999999999999963
No 338
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=89.33 E-value=0.41 Score=38.61 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=46.2
Q ss_pred eEEEecc-hhHHhhCCCC-------CCceEEEccCCC---CCCC-C-CEEEeccccccCC---------hHHHHHHHHHH
Q 017777 227 KGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV---SVPK-G-DAIFIKWICHDWS---------DEHCVKFLKNC 284 (366)
Q Consensus 227 ~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~~~-~-D~i~~~~~lh~~~---------~~~~~~~L~~~ 284 (366)
++++||+ +++++..++. .+++++..+-.. -.++ . |+++++ |-++| .+.-...|+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 4788998 7777766542 578888765443 2444 3 888776 33333 12346889999
Q ss_pred HHhCCCCcEEEEEccc
Q 017777 285 YEALPVNGKVIVAESI 300 (366)
Q Consensus 285 ~~~L~pgG~lli~e~~ 300 (366)
.+.|+|||.+.|+-..
T Consensus 79 l~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 79 LELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHEEEEEEEEEEE--
T ss_pred HHhhccCCEEEEEEeC
Confidence 9999999999997553
No 339
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=88.96 E-value=8.3 Score=34.11 Aligned_cols=92 Identities=18% Similarity=0.105 Sum_probs=49.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----CCCceEEEccCCCCCCC---C--CEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----FPGVEHVGGDMFVSVPK---G--DAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~~~~~---~--D~i~~~~~l 269 (366)
.+++||=||=. -..+.+++...+..+++++|+ ...++..++ .-.|+.+..|+..++|+ + |+++.--.
T Consensus 44 ~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 35889999844 334444555556668999987 555554432 13489999999998774 2 99987432
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
++.+-..-++.+...+||.-|....
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g~~gy 146 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEGCAGY 146 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEE
T ss_pred --CCHHHHHHHHHHHHHHhCCCCceEE
Confidence 2335567899999999986663333
No 340
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=88.89 E-value=0.5 Score=32.98 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=38.5
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
++.++..|.+ ++.+..+||+.+++ +...+++-++.|.+.|+...
T Consensus 2 ~~~il~~L~~----~~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~ 45 (69)
T TIGR00122 2 PLRLLALLAD----NPFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVL 45 (69)
T ss_pred hHHHHHHHHc----CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 4567788887 48999999999999 99999999999999999654
No 341
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=88.69 E-value=0.64 Score=31.26 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=36.1
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
|+..|.. ++.|..+|++.+++ +..-+.+.|+.|...|++...
T Consensus 2 il~~l~~----~~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~ 43 (66)
T smart00418 2 ILKLLAE----GELCVCELAEILGL----SQSTVSHHLKKLREAGLVESR 43 (66)
T ss_pred HHHHhhc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence 4555553 48999999999999 999999999999999999963
No 342
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=88.69 E-value=0.44 Score=33.00 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=29.5
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
-|-|+.|||+.+|++ ++..+.+.|+.|+..|+|++.
T Consensus 24 ~~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r~ 59 (65)
T PF01726_consen 24 YPPTVREIAEALGLK---STSTVQRHLKALERKGYIRRD 59 (65)
T ss_dssp S---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEEG
T ss_pred CCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccCC
Confidence 477999999999992 388999999999999999973
No 343
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=88.54 E-value=3.3 Score=39.57 Aligned_cols=100 Identities=17% Similarity=0.144 Sum_probs=62.2
Q ss_pred CCCCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEcc----CCC---CC-CC-C-CEEEec
Q 017777 199 FEGLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGD----MFV---SV-PK-G-DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D----~~~---~~-~~-~-D~i~~~ 266 (366)
.....+||.+|||. |..+..+++...-.++++++. ++..+.+++...+.++... +.+ .. +. + |+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 55678899999987 889999999876445777775 6666666544233332211 111 11 11 3 777553
Q ss_pred c---------------ccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 267 W---------------ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 267 ~---------------~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
- +|+..++. ...++.+.+.|+|+|++++....
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~G~iv~~g~~ 308 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRKGGTVSIIGVY 308 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhccCCEEEEEcCC
Confidence 1 11222222 35688899999999999998643
No 344
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=88.12 E-value=0.61 Score=38.63 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=39.7
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..|++.|... +.+|-+|||..+|+ +..-+++.|..|...|++...
T Consensus 17 v~Vl~aL~~~---~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~~ 61 (158)
T TIGR00373 17 GLVLFSLGIK---GEFTDEEISLELGI----KLNEVRKALYALYDAGLADYK 61 (158)
T ss_pred HHHHHHHhcc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceee
Confidence 4578888755 59999999999999 999999999999999999753
No 345
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=87.90 E-value=0.82 Score=35.74 Aligned_cols=49 Identities=14% Similarity=0.280 Sum_probs=44.3
Q ss_pred HHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 38 KSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 38 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+..+...|.+.+.+. |.+|..+++..+|+ +...++++++.|++.|-|..
T Consensus 10 r~eLk~rIvElVRe~---GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~ 58 (127)
T PF06163_consen 10 REELKARIVELVREH---GRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYR 58 (127)
T ss_pred HHHHHHHHHHHHHHc---CCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEe
Confidence 456677888999987 69999999999999 99999999999999999985
No 346
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=87.90 E-value=0.69 Score=30.54 Aligned_cols=40 Identities=15% Similarity=0.385 Sum_probs=33.0
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccc
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYS 89 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g 89 (366)
.|+..|.+.+ +++|.++||+.+++ +.+-+++-+..|...|
T Consensus 4 ~il~~L~~~~--~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 4 QILKLLLESK--EPITAKELAEELGV----SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHTT--TSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCC
Confidence 4566674432 57999999999999 9999999999999999
No 347
>PHA02943 hypothetical protein; Provisional
Probab=87.62 E-value=0.68 Score=37.41 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=37.9
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.+++.|.. |..|..|||+++|+ +....+-.|..|+..|.+.+.
T Consensus 15 eILE~Lk~----G~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV 57 (165)
T PHA02943 15 KTLRLLAD----GCKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKV 57 (165)
T ss_pred HHHHHHhc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEE
Confidence 46677744 68999999999999 999999999999999999975
No 348
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=87.36 E-value=0.79 Score=31.89 Aligned_cols=45 Identities=16% Similarity=0.349 Sum_probs=38.5
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+..|+..+... +.+..||++.+++ +..-+.+.|+.|...|++...
T Consensus 9 ~~~il~~l~~~----~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~ 53 (78)
T cd00090 9 RLRILRLLLEG----PLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESR 53 (78)
T ss_pred HHHHHHHHHHC----CcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEE
Confidence 44567777763 5999999999999 999999999999999999864
No 349
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=87.34 E-value=1.5 Score=40.02 Aligned_cols=66 Identities=23% Similarity=0.239 Sum_probs=52.8
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCe-EEEecc-hhHHhhCCCC-----CCceEEEccCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIK-GINFDL-PHVIQDAPAF-----PGVEHVGGDMF 254 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~ 254 (366)
.+.++++.+. ..+...++|.-=|.|+.+..+++.+|... ++++|. |.+++.+++. +|+.++..+|.
T Consensus 11 Ll~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~ 83 (314)
T COG0275 11 LLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA 83 (314)
T ss_pred HHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence 3556777776 66779999999999999999999998665 999997 8888877652 47777776654
No 350
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=86.53 E-value=0.7 Score=34.65 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=37.9
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLA 110 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t 110 (366)
.++|..|||+.+++ ++.-+.|.|+.|+..|+|... .| .+.|..+
T Consensus 46 ~~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r~-----~~--~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL----SRTHVSDAIKSLARRRIIFRQ-----GM--MGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeee-----cC--CceeecC
Confidence 48999999999999 999999999999999999963 22 4777776
No 351
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=85.96 E-value=1.3 Score=45.73 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=55.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhC-------C-----CCeEEEecc-h---hHHhhCC----------------------C
Q 017777 201 GLNSVVDVGGGIGATLNMIISKY-------P-----SIKGINFDL-P---HVIQDAP----------------------A 242 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~----------------------~ 242 (366)
..-+|+|+|=|+|.......+.+ | .++++.++. | +.+..+. .
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34799999999999777766544 3 356677763 2 1111110 0
Q ss_pred C-------C--CceEEEccCCCC---CCC-CCEEEecc-ccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 243 F-------P--GVEHVGGDMFVS---VPK-GDAIFIKW-ICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 243 ~-------~--~v~~~~~D~~~~---~~~-~D~i~~~~-~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
. . ++++..+|+.+- ... .|++++-. .-..-|+--...+|+.+++.++|||++.-.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 0 1 233455676541 222 38887632 111112222347899999999999988753
No 352
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=85.89 E-value=15 Score=30.61 Aligned_cols=120 Identities=19% Similarity=0.166 Sum_probs=70.5
Q ss_pred EeCCccHHHHHHHHhCC---CCeEEEecc-hhHHhhCCC---------CCCceEE-EccCCC--C-C--CC--CCEEEec
Q 017777 208 VGGGIGATLNMIISKYP---SIKGINFDL-PHVIQDAPA---------FPGVEHV-GGDMFV--S-V--PK--GDAIFIK 266 (366)
Q Consensus 208 vG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~---------~~~v~~~-~~D~~~--~-~--~~--~D~i~~~ 266 (366)
||=|.=.++..|++.++ ++.++.+|. .+..+.... ..++.++ ..|..+ . . .. .|.|+++
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 56666678888888877 344566675 333322221 1344433 335544 1 2 11 2999886
Q ss_pred cccccCC----h-------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHH
Q 017777 267 WICHDWS----D-------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQE 335 (366)
Q Consensus 267 ~~lh~~~----~-------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 335 (366)
+-.-... . +=...+++.++..|+++|.+.|.-.... .++.=.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~---------------------------py~~W~ 135 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ---------------------------PYDSWN 135 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC---------------------------CCcccc
Confidence 5433210 1 1235788999999999999998543211 112223
Q ss_pred HHHHHHHcCCceeEEEECC
Q 017777 336 FRALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 336 ~~~ll~~aGf~~~~~~~~~ 354 (366)
+.++.+++||..++..+..
T Consensus 136 i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 136 IEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHHHHhcCCEEEEEecCC
Confidence 5578888999998887764
No 353
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=85.86 E-value=0.94 Score=35.13 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=39.8
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCC-CCcchHHHHHHHHhcccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNP-DAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~-~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+.-|++.|...+ .+.|++||.+.+.-..+ .+..-+-|.|+.|+..|++.+.
T Consensus 3 R~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~ 54 (116)
T cd07153 3 RLAILEVLLESD--GHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREI 54 (116)
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 455788887643 68999999999843211 2777889999999999999974
No 354
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=85.84 E-value=0.92 Score=39.59 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=42.9
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..+|..+||+.+++ ++..+.+.|+.|...|++++.. ++ ....+.+|+.+..++
T Consensus 20 ~~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~----~~-r~~~v~LTekG~~ll 72 (217)
T PRK14165 20 VKISSSEFANHTGT----SSKTAARILKQLEDEGYITRTI----VP-RGQLITITEKGLDVL 72 (217)
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEE----cC-CceEEEECHHHHHHH
Confidence 46899999999999 9999999999999999998741 11 146688887776555
No 355
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=85.79 E-value=0.92 Score=30.14 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=31.0
Q ss_pred CC-CHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 57 FM-SPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 57 ~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+ |..+||+.+++ +...+++.|+.|...|++..
T Consensus 19 ~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~ 52 (60)
T smart00345 19 KLPSERELAAQLGV----SRTTVREALSRLEAEGLVQR 52 (60)
T ss_pred cCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 45 89999999999 99999999999999999985
No 356
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=85.74 E-value=0.97 Score=37.17 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=42.6
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
..+..|++.|..+ +..+..+||+++|+ ++..+.+=++-|...|++..
T Consensus 9 ~~D~~Il~~Lq~d---~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~~ 55 (153)
T PRK11179 9 NLDRGILEALMEN---ARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIITG 55 (153)
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 3577889999886 69999999999999 99999999999999999984
No 357
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=85.58 E-value=0.84 Score=38.02 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=42.8
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
..+..|+..|.+. +..|..+||+++|+ ++..+.+=++-|...|++..
T Consensus 14 ~~D~~IL~~Lq~d---~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 14 RIDRNILNELQKD---GRISNVELSKRVGL----SPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHhccC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 4678899999886 69999999999999 99999999999999999984
No 358
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.18 E-value=5.1 Score=37.85 Aligned_cols=93 Identities=24% Similarity=0.172 Sum_probs=64.0
Q ss_pred CeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCC--------C-CCCCC-CEEEeccccc
Q 017777 203 NSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMF--------V-SVPKG-DAIFIKWICH 270 (366)
Q Consensus 203 ~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~--------~-~~~~~-D~i~~~~~lh 270 (366)
.+|+=+||| .|.++..+++.+.-.++++.|. +.-++.|++........-.-. + ....+ |+++=..-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 389999999 5777788888888888999997 888888876322222211111 1 11223 88875544
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 271 DWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
....+..+.++++|||++.+.-....+
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 124688899999999999998776544
No 359
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=85.13 E-value=0.96 Score=33.68 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=38.4
Q ss_pred HHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 60 PKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 60 ~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+.+||+.+++ ++..+.+.++.|...|+|.+. + +..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~-----~---~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYE-----P---YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEc-----C---CCceEechhHHHHH
Confidence 5789999999 999999999999999999974 1 34688887776554
No 360
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=84.85 E-value=0.68 Score=34.48 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=43.6
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
++....-|.-.+++ +-...+..++.|+..|++... ++|. ...|.+|+.+..|+.
T Consensus 30 ~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~~----~~~~-~~~y~lT~KG~~fle 83 (95)
T COG3432 30 GGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIKQ----DNGR-RKVYELTEKGKRFLE 83 (95)
T ss_pred CCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEec----cCCc-cceEEEChhHHHHHH
Confidence 58888899999999 999999999999999966652 2221 247999999987764
No 361
>PRK10870 transcriptional repressor MprA; Provisional
Probab=84.83 E-value=1.1 Score=37.71 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=49.1
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
++.++-.|... ..++.|..|||+.+++ +...+.++++-|+..|+|++.. .++|+. .-...+|+.+..++.
T Consensus 57 q~~iL~~L~~~-~~~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~-~~~DrR-~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 57 LFMALITLESQ-ENHSIQPSELSCALGS----SRTNATRIADELEKRGWIERRE-SDNDRR-CLHLQLTEKGHEFLR 126 (176)
T ss_pred HHHHHHHHhcC-CCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHHH
Confidence 34556666532 1257899999999999 9999999999999999999752 122211 124667777766553
No 362
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=84.58 E-value=1.5 Score=32.46 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=51.0
Q ss_pred HHHhhChHHHHhhc-CCCCCCCHHHHHhhCCCCCCCCcchHHHHHH----------HHhccccc-ccccccCCCCccccc
Q 017777 39 SAIELDLLEIIAKA-GPDAFMSPKDIASQLPTKNPDAHTVLDRILR----------LLASYSVL-NCSLRNLPDGKVERL 106 (366)
Q Consensus 39 ~a~~lglf~~L~~~-~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~----------~L~~~g~l-~~~~~~~~~g~~~~~ 106 (366)
.=++..||..|... | .+.++.|||..+++ ++..+..-|+ .|+.+|++ .+. ...| ...
T Consensus 8 S~~R~~vl~~L~~~yp--~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~---~~~g--~k~ 76 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYP--EPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEE---EKGG--FKY 76 (90)
T ss_pred HHHHHHHHHHHHHcCC--CcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEee---ecCC--eeE
Confidence 45677888888886 4 68999999999999 8888777765 48899999 332 1233 458
Q ss_pred cccchhchhhh
Q 017777 107 YGLAPVCKFLT 117 (366)
Q Consensus 107 y~~t~~~~~l~ 117 (366)
|++|+.+..++
T Consensus 77 Y~lT~~G~~~~ 87 (90)
T PF07381_consen 77 YRLTEKGKRIA 87 (90)
T ss_pred EEeChhhhhHH
Confidence 99998776544
No 363
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=84.11 E-value=1.2 Score=36.32 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=42.9
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..+..|+..|.+. ++.+..+||+++|+ ++..+.+-++-|...|++...
T Consensus 8 ~~D~~IL~~L~~d---~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~~ 55 (154)
T COG1522 8 DIDRRILRLLQED---ARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKGY 55 (154)
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceeeE
Confidence 3567788999986 69999999999999 999999999999999999853
No 364
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=83.43 E-value=0.98 Score=34.49 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=33.3
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.|++.|... |.++-++||+.+++ ++.-++++|..|...|++..
T Consensus 17 ~Il~~L~~~---~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~ 59 (105)
T PF02002_consen 17 RILDALLRK---GELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSY 59 (105)
T ss_dssp HHHHHHHHH-----B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EE
T ss_pred HHHHHHHHc---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEE
Confidence 467888865 58999999999999 99999999999999999975
No 365
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=83.05 E-value=1.1 Score=44.46 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=55.1
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhcCC
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~~~ 120 (366)
.+..|+..|... ++.|..+||+.+++ ++..+.+.++-|.+.|+|+... . ....|.+|+.++.++...
T Consensus 7 ~e~~vL~~L~~~---~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~---~---~~~~i~LTeeG~~~~~~g 73 (489)
T PRK04172 7 NEKKVLKALKEL---KEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEE---R---VEEVYVLTEEGKKYAEEG 73 (489)
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEe---e---eEEEEEECHHHHHHHHhc
Confidence 456677777765 48999999999999 9999999999999999999741 1 136799999999777654
Q ss_pred C
Q 017777 121 D 121 (366)
Q Consensus 121 ~ 121 (366)
.
T Consensus 74 ~ 74 (489)
T PRK04172 74 L 74 (489)
T ss_pred C
Confidence 4
No 366
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=82.97 E-value=2 Score=29.13 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=29.9
Q ss_pred CCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 58 MSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 58 ~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.|..+||+.+++ +...+++.|..|...|+|+.
T Consensus 26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~ 57 (66)
T cd07377 26 PSERELAEELGV----SRTTVREALRELEAEGLVER 57 (66)
T ss_pred CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 359999999999 99999999999999999985
No 367
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=82.90 E-value=2.6 Score=38.49 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=66.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCC----CC--CCceEEEccCCCC----CCC-CCEEEe
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAP----AF--PGVEHVGGDMFVS----VPK-GDAIFI 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~----~~--~~v~~~~~D~~~~----~~~-~D~i~~ 265 (366)
..+..+|||..++.|.=+..+++... ...++..|. +.-+...+ +. ..+.....|.... .+. .|.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45678899999999999999999887 557888886 44433332 22 4566666665432 122 377765
Q ss_pred ------ccccccCChH-------H-------HHHHHHHHHHhC----CCCcEEEEEcc
Q 017777 266 ------KWICHDWSDE-------H-------CVKFLKNCYEAL----PVNGKVIVAES 299 (366)
Q Consensus 266 ------~~~lh~~~~~-------~-------~~~~L~~~~~~L----~pgG~lli~e~ 299 (366)
..++..-++- + -.++|+++.+.+ ||||+|+-..-
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 2233322221 1 258999999999 99999988664
No 368
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=82.80 E-value=1.9 Score=38.59 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=49.7
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
..|..++-.|-.. |+.|+.||++..|+ +.+.+-.+|+-|..-|+++.. +|+ ...|+.-+...
T Consensus 16 ~yEa~vY~aLl~~---g~~tA~eis~~sgv----P~~kvY~vl~sLe~kG~v~~~-----~g~-P~~y~av~p~~ 77 (247)
T COG1378 16 EYEAKVYLALLCL---GEATAKEISEASGV----PRPKVYDVLRSLEKKGLVEVI-----EGR-PKKYRAVPPEE 77 (247)
T ss_pred HHHHHHHHHHHHh---CCccHHHHHHHcCC----CchhHHHHHHHHHHCCCEEee-----CCC-CceEEeCCHHH
Confidence 4566667777775 59999999999999 999999999999999999963 332 56777765554
No 369
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=82.73 E-value=2.1 Score=33.58 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCC-CCCCCCcchHHHHHHHHhcccccccccccC
Q 017777 20 ANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLP-TKNPDAHTVLDRILRLLASYSVLNCSLRNL 98 (366)
Q Consensus 20 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 98 (366)
.+...++.+.+-|..-+|+... . |+....||.+.++ + ++.-|.+-|+.|+..|++++.. .+
T Consensus 12 ~~~~~l~~ig~kW~~lIl~~L~---------~----g~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R~~-~~ 73 (120)
T COG1733 12 PVEEALEVIGGKWTLLILRDLF---------D----GPKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVERVV-YP 73 (120)
T ss_pred CHHHHHHHHcCccHHHHHHHHh---------c----CCCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEeee-cC
Confidence 3666777777777777665443 3 3889999999998 9 9999999999999999999751 11
Q ss_pred CCCccccccccchhchhhh
Q 017777 99 PDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 99 ~~g~~~~~y~~t~~~~~l~ 117 (366)
.- +..-.|++|+.+..+.
T Consensus 74 ~~-PprveY~LT~~G~~L~ 91 (120)
T COG1733 74 EE-PPRVEYRLTEKGRDLL 91 (120)
T ss_pred CC-CceeEEEEhhhHHHHH
Confidence 10 0135688888776555
No 370
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=82.57 E-value=1.1 Score=33.90 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=38.8
Q ss_pred HHhhChHHHHhh-cCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 40 AIELDLLEIIAK-AGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 40 a~~lglf~~L~~-~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+.-.||+.|.. ...+-.+++++|++++++ ++.-++..|+.|...|++--
T Consensus 47 ~~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~----~~~~v~~al~~L~~eG~IYs 97 (102)
T PF08784_consen 47 PLQDKVLNFIKQQPNSEEGVHVDEIAQQLGM----SENEVRKALDFLSNEGHIYS 97 (102)
T ss_dssp HHHHHHHHHHHC----TTTEEHHHHHHHSTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHhCCeEec
Confidence 445567777776 223457999999999999 99999999999999999864
No 371
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=82.30 E-value=1.7 Score=35.01 Aligned_cols=47 Identities=11% Similarity=0.158 Sum_probs=40.1
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
|++|++|||-..|+ ..+.+...|.++.+-|-|.+. ..+| +=+|+++.
T Consensus 5 Ga~T~eELA~~FGv----ttRkvaStLa~~ta~Grl~Rv---~q~g--kfRy~iPg 51 (155)
T PF07789_consen 5 GAKTAEELAGKFGV----TTRKVASTLAMVTATGRLIRV---NQNG--KFRYCIPG 51 (155)
T ss_pred CcccHHHHHHHhCc----chhhhHHHHHHHHhcceeEEe---cCCC--ceEEeCCC
Confidence 79999999999999 999999999999999999975 3444 45777763
No 372
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=82.09 E-value=1.6 Score=40.10 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=37.1
Q ss_pred CCeEEEEeCCccH-HHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEc----cCCCCC--C-CC-CEE
Q 017777 202 LNSVVDVGGGIGA-TLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGG----DMFVSV--P-KG-DAI 263 (366)
Q Consensus 202 ~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~----D~~~~~--~-~~-D~i 263 (366)
..++||||+|... +..--++ ..+.++++.|+ +..++.|++. .+|+++.. +++... + +. |+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~-~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAK-LYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHH-HH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhh-hcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 5789999999764 4443333 34899999997 7777766542 56777654 344422 1 22 888
Q ss_pred Eecccccc
Q 017777 264 FIKWICHD 271 (366)
Q Consensus 264 ~~~~~lh~ 271 (366)
+|+--+|.
T Consensus 182 mCNPPFy~ 189 (299)
T PF05971_consen 182 MCNPPFYS 189 (299)
T ss_dssp EE-----S
T ss_pred ecCCcccc
Confidence 99888886
No 373
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=81.82 E-value=2.3 Score=36.14 Aligned_cols=66 Identities=17% Similarity=-0.017 Sum_probs=48.4
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++..|... ++.|..+||+.+.+ +..-+.++++-|+..|+|.+.. .+.|.. .-...+|+.+..+.
T Consensus 48 ~~iL~~L~~~---~~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~-~~~DrR-~~~I~LTekG~~l~ 113 (185)
T PRK13777 48 HHILWIAYHL---KGASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSK-KEDDKR-NTYIELTEKGEELL 113 (185)
T ss_pred HHHHHHHHhC---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence 4567777765 48999999999999 8889999999999999999742 122211 12356776666555
No 374
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=81.58 E-value=1.9 Score=33.25 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=51.0
Q ss_pred HHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 38 KSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 38 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
-+..++.++..|...+ +.+..+||+.+++ ++..+.++++-|+..|+|.+.. .+.|+. .-.+.+|+.+..+.
T Consensus 20 lt~~q~~~L~~l~~~~---~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~-~~~DrR-~~~l~lT~~G~~~~ 90 (126)
T COG1846 20 LTPPQYQVLLALYEAG---GITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLR-DPEDRR-AVLVRLTEKGRELL 90 (126)
T ss_pred CCHHHHHHHHHHHHhC---CCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecC-Cccccc-eeeEEECccHHHHH
Confidence 3456677777777752 4444999999999 9999999999999999999752 111111 12567777776555
Q ss_pred c
Q 017777 118 K 118 (366)
Q Consensus 118 ~ 118 (366)
.
T Consensus 91 ~ 91 (126)
T COG1846 91 E 91 (126)
T ss_pred H
Confidence 3
No 375
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=81.38 E-value=1.4 Score=37.98 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=32.9
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.+.|++|+|+++|+ +..-.||.|.+|++.|+++..
T Consensus 172 ~~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 172 QELTAEELAQALGI----SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred CccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeEE
Confidence 59999999999999 999999999999999999864
No 376
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=81.31 E-value=3.4 Score=29.58 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=32.0
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.|+..++||+.++. ++--++.-|..|.++|+|+.
T Consensus 22 ~PVgSk~ia~~l~~----s~aTIRN~M~~Le~lGlve~ 55 (78)
T PF03444_consen 22 EPVGSKTIAEELGR----SPATIRNEMADLEELGLVES 55 (78)
T ss_pred CCcCHHHHHHHHCC----ChHHHHHHHHHHHHCCCccC
Confidence 59999999999999 88899999999999999984
No 377
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=81.28 E-value=17 Score=30.96 Aligned_cols=104 Identities=18% Similarity=0.160 Sum_probs=71.3
Q ss_pred CCCeEEEEeCCccHHHHHHH----HhCCCCeEEEecc--hhHHhhCCCCCCceEEEccCCCCC--------CC-C-CEEE
Q 017777 201 GLNSVVDVGGGIGATLNMII----SKYPSIKGINFDL--PHVIQDAPAFPGVEHVGGDMFVSV--------PK-G-DAIF 264 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~----~~~p~~~~~~~D~--~~~~~~a~~~~~v~~~~~D~~~~~--------~~-~-D~i~ 264 (366)
++..|.++|.-.|..+...+ ......+++++|+ -..-..+++.++|.|+.++-.+|. .. . -+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 47899999988887555433 3334467777775 211123444689999999977631 11 2 5666
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCC
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPD 306 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~ 306 (366)
+-..-|++ +.....|+-...+|.-|-++++-|...++-+.
T Consensus 149 ilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~ 188 (237)
T COG3510 149 ILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLPG 188 (237)
T ss_pred EecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCCC
Confidence 66666653 45567788888999999999999988876543
No 378
>PRK05638 threonine synthase; Validated
Probab=81.06 E-value=1.9 Score=42.18 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=49.5
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCC--CCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLP--TKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~--~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.|+..|.+ ++++..||++.++ + ++..+.+.|+.|...|+|+... +.|+ .-.|++|+.+..++
T Consensus 373 r~~IL~~L~~----~~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~---~~g~-~~~Y~Lt~~g~~~l 438 (442)
T PRK05638 373 KLEILKILSE----REMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAY---RKGR-RVYYKLTEKGRRLL 438 (442)
T ss_pred HHHHHHHHhh----CCccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEee---cCCC-cEEEEECcHHHHHH
Confidence 4557777876 4899999999998 7 8889999999999999998521 2232 34688988776544
No 379
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=81.02 E-value=2.9 Score=33.07 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCce
Q 017777 278 VKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNT 357 (366)
Q Consensus 278 ~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 357 (366)
..+++++++.++|||.+..... ...+++.|.++||.+.+....+...
T Consensus 70 ~e~~~~l~~~~~~~~~l~Tys~---------------------------------a~~Vr~~L~~aGF~v~~~~g~g~Kr 116 (124)
T PF05430_consen 70 EELFKKLARLSKPGGTLATYSS---------------------------------AGAVRRALQQAGFEVEKVPGFGRKR 116 (124)
T ss_dssp HHHHHHHHHHEEEEEEEEES-----------------------------------BHHHHHHHHHCTEEEEEEE-STTSS
T ss_pred HHHHHHHHHHhCCCcEEEEeec---------------------------------hHHHHHHHHHcCCEEEEcCCCCCcc
Confidence 3689999999999998865211 2346788999999988777777777
Q ss_pred eEEEEEec
Q 017777 358 YIMEFLKS 365 (366)
Q Consensus 358 ~vie~~k~ 365 (366)
-++.+.|+
T Consensus 117 ~~~~a~~~ 124 (124)
T PF05430_consen 117 EMLRAVKP 124 (124)
T ss_dssp EEEEEEC-
T ss_pred hheEEEcC
Confidence 77777764
No 380
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=80.87 E-value=1.8 Score=33.74 Aligned_cols=35 Identities=9% Similarity=0.089 Sum_probs=33.3
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.++|++|||+.+.+ +++.++.+|+-|...|+|+..
T Consensus 18 ~~vtl~elA~~l~c----S~Rn~r~lLkkm~~~gWi~W~ 52 (115)
T PF12793_consen 18 VEVTLDELAELLFC----SRRNARTLLKKMQEEGWITWQ 52 (115)
T ss_pred cceeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeee
Confidence 57899999999999 999999999999999999984
No 381
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=80.83 E-value=1.7 Score=42.50 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=57.7
Q ss_pred HHhhChHHHHhhcCCCCC-CCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 40 AIELDLLEIIAKAGPDAF-MSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~-~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
+.+..|+..|... ++ .+.++||+.+|+ ++..+-+.+..|.+.|+++...+ +...|.+|..+..++.
T Consensus 3 ~~e~~iL~~l~~~---~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~~------~~~~~~LT~eG~~~l~ 69 (492)
T PLN02853 3 MAEEALLGALSNN---EEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQDI------KRETWVLTEEGKKYAA 69 (492)
T ss_pred hHHHHHHHHHHhc---CCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE------EEEEEEECHHHHHHHH
Confidence 4677788888874 34 799999999999 99999999999999999986421 1588999999998887
Q ss_pred CCCC
Q 017777 119 NEDG 122 (366)
Q Consensus 119 ~~~~ 122 (366)
..+|
T Consensus 70 ~G~P 73 (492)
T PLN02853 70 EGSP 73 (492)
T ss_pred cCCH
Confidence 6554
No 382
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=80.69 E-value=8 Score=34.16 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=64.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-----hhHHhhCCCCCCceEEEccCCCCCCC----C--CEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-----PHVIQDAPAFPGVEHVGGDMFVSVPK----G--DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~D~~~~~~~----~--D~i~~~ 266 (366)
+....+||-+|+++|.....+.... |.--++.++. -+.+..|++.++|.-+.-|..-|..- + |+||.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 5678999999999999877765543 4444455542 34566777778888777787655431 2 66654
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+-+ | ++.+-+.-++..-||+||.++|.-.
T Consensus 233 Dvaq--p-dq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 233 DVAQ--P-DQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred cCCC--c-hhhhhhhhhhhhhhccCCeEEEEEe
Confidence 2222 2 3445555678889999999888543
No 383
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=80.11 E-value=5.1 Score=35.80 Aligned_cols=84 Identities=15% Similarity=0.058 Sum_probs=60.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCCCC--CC-CEEEeccccccCChHH
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVP--KG-DAIFIKWICHDWSDEH 276 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~--~~-D~i~~~~~lh~~~~~~ 276 (366)
.++..-+|+|...|+++-.|.+ .+..++.+|...|.+..-..++|+....|-|+-.| .. |-.+|-.|= +
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVk--r~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmVE------k 281 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVK--RNMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMVE------K 281 (358)
T ss_pred cCCceeeecccCCCccchhhhh--cceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehhc------C
Confidence 4567889999999999999998 56789999987776666667899999999988444 33 666665442 2
Q ss_pred HHHHHHHHHHhCCCC
Q 017777 277 CVKFLKNCYEALPVN 291 (366)
Q Consensus 277 ~~~~L~~~~~~L~pg 291 (366)
...+-..+..+|..|
T Consensus 282 P~rv~~li~~Wl~nG 296 (358)
T COG2933 282 PARVAALIAKWLVNG 296 (358)
T ss_pred cHHHHHHHHHHHHcc
Confidence 234455556666544
No 384
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=79.77 E-value=1.1 Score=31.60 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=32.6
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
-+.|-++||+.+|+ +...+.+.|+.|...|+++..
T Consensus 27 ~~lt~~~iA~~~g~----sr~tv~r~l~~l~~~g~I~~~ 61 (76)
T PF13545_consen 27 LPLTQEEIADMLGV----SRETVSRILKRLKDEGIIEVK 61 (76)
T ss_dssp EESSHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred ecCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEc
Confidence 38899999999999 999999999999999999963
No 385
>PRK10742 putative methyltransferase; Provisional
Probab=79.61 E-value=3.6 Score=36.64 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=32.1
Q ss_pred HHHHhccCCCCCC--eEEEEeCCccHHHHHHHHhCCCCeEEEecc
Q 017777 191 KILENYKGFEGLN--SVVDVGGGIGATLNMIISKYPSIKGINFDL 233 (366)
Q Consensus 191 ~~~~~~~~~~~~~--~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~ 233 (366)
.+++.+. ++++. +|||.=+|.|..+..++.+ +++++.++.
T Consensus 77 ~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr 118 (250)
T PRK10742 77 AVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLER 118 (250)
T ss_pred HHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEEC
Confidence 4566665 55555 9999999999999999986 667888886
No 386
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.45 E-value=18 Score=28.05 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=56.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCCCC---CC-CEEEeccccccCChH
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVP---KG-DAIFIKWICHDWSDE 275 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~---~~-D~i~~~~~lh~~~~~ 275 (366)
....+|++||-|.=......+.++ ++.++..|+.+. .++ ..+++...|+++|.- ++ |+|.+.. |.+
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR-----ppp 81 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYSIR-----PPP 81 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceeecC-----CCH
Confidence 345699999988665444444433 378888897443 233 689999999998532 33 8887632 345
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 276 HCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 276 ~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
+....+-++++++ |..++|.-..
T Consensus 82 El~~~ildva~aV--ga~l~I~pL~ 104 (129)
T COG1255 82 ELQSAILDVAKAV--GAPLYIKPLT 104 (129)
T ss_pred HHHHHHHHHHHhh--CCCEEEEecC
Confidence 5566666677765 4566665443
No 387
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=79.32 E-value=14 Score=36.68 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=59.2
Q ss_pred CCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC--------------C--------
Q 017777 201 GLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV--------------S-------- 256 (366)
Q Consensus 201 ~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~--------------~-------- 256 (366)
.+.+|+-+|||. |..+...++... .+++++|. ++..+.+++. +.++...|..+ +
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 478999999995 556666666654 58999997 7777777653 33332211110 1
Q ss_pred ---C-CCCCEEEeccccccCChHHHHHH-HHHHHHhCCCCcEEEEEcc
Q 017777 257 ---V-PKGDAIFIKWICHDWSDEHCVKF-LKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 257 ---~-~~~D~i~~~~~lh~~~~~~~~~~-L~~~~~~L~pgG~lli~e~ 299 (366)
. ...|+++-.-..-. .....+ .+...+.|||||+++.+-.
T Consensus 242 ~~~~~~gaDVVIetag~pg---~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPG---KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCc---ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 12388876544321 111234 5999999999999888754
No 388
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=79.22 E-value=4.3 Score=38.05 Aligned_cols=59 Identities=12% Similarity=0.250 Sum_probs=39.4
Q ss_pred CchHHHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC----C----CCeEEEecc
Q 017777 170 DLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY----P----SIKGINFDL 233 (366)
Q Consensus 170 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p----~~~~~~~D~ 233 (366)
-|++...|......+.. +....+. .+.+..++++|+|+|.++..+++.. | .+++..+..
T Consensus 51 Apels~lFGella~~~~----~~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~ 117 (370)
T COG1565 51 APELSQLFGELLAEQFL----QLWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEP 117 (370)
T ss_pred chhHHHHHHHHHHHHHH----HHHHHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEec
Confidence 46676777776554322 2222333 4456789999999999999888764 3 567777775
No 389
>PF13730 HTH_36: Helix-turn-helix domain
Probab=78.86 E-value=1.8 Score=28.41 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=28.5
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVL 91 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l 91 (366)
..|.+.||+.+|+ ..+-+.+.++.|+..|+|
T Consensus 25 ~pS~~~la~~~g~----s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 25 FPSQETLAKDLGV----SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCcCC
Confidence 3489999999999 999999999999999986
No 390
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=78.22 E-value=1.8 Score=37.74 Aligned_cols=43 Identities=26% Similarity=0.266 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHH
Q 017777 32 VLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRL 84 (366)
Q Consensus 32 ~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~ 84 (366)
..-.+|+.|++.|-||.=. ..+.+|||+.+|+ .+.-+...||-
T Consensus 159 rQ~~vL~~A~~~GYFd~PR------~~~l~dLA~~lGI----Skst~~ehLRr 201 (215)
T COG3413 159 RQLEVLRLAYKMGYFDYPR------RVSLKDLAKELGI----SKSTLSEHLRR 201 (215)
T ss_pred HHHHHHHHHHHcCCCCCCc------cCCHHHHHHHhCC----CHHHHHHHHHH
Confidence 3457899999999999943 5899999999999 66666555554
No 391
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=78.22 E-value=2.8 Score=31.17 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=40.9
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..+.|+..|... ||-.+.-||..+++ +...++..|+-|..+|+|++.
T Consensus 8 l~~~IL~hl~~~---~~Dy~k~ia~~l~~----~~~~v~~~l~~Le~~GLler~ 54 (92)
T PF10007_consen 8 LDLKILQHLKKA---GPDYAKSIARRLKI----PLEEVREALEKLEEMGLLERV 54 (92)
T ss_pred hHHHHHHHHHHH---CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 345677777776 58899999999999 999999999999999999975
No 392
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=78.12 E-value=4.1 Score=36.35 Aligned_cols=97 Identities=20% Similarity=0.273 Sum_probs=52.8
Q ss_pred CCCeEEEEeCCccHHHHHH---HHhC--CCCeEEEecc----hhHHh---------------------------hCCCC-
Q 017777 201 GLNSVVDVGGGIGATLNMI---ISKY--PSIKGINFDL----PHVIQ---------------------------DAPAF- 243 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l---~~~~--p~~~~~~~D~----~~~~~---------------------------~a~~~- 243 (366)
-+..|+|+||-.|..+..+ ++.+ ++-++.++|. |+.-. ...++
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 3589999999999866543 3333 4556888883 32211 11111
Q ss_pred ---CCceEEEccCCCCCCCC---CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 244 ---PGVEHVGGDMFVSVPKG---DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 244 ---~~v~~~~~D~~~~~~~~---D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
++++++.|.+.+..|.. .+.++. +=.++= +.....|..++..|.|||.|++-|.
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~-lD~DlY-esT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLH-LDCDLY-ESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEE-E---SH-HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEE-Eeccch-HHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 46889999986644422 222221 101111 2346889999999999999999554
No 393
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=78.05 E-value=2.4 Score=38.00 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=40.5
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+..|.+.|.+. +..++.|||+.+++ ++.-++|-|+.|...|++.+.
T Consensus 7 ~~~Il~~l~~~---~~~~~~ela~~l~v----S~~TirRdL~~Le~~g~i~r~ 52 (251)
T PRK13509 7 HQILLELLAQL---GFVTVEKVIERLGI----SPATARRDINKLDESGKLKKV 52 (251)
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 34477888886 58999999999999 999999999999999999863
No 394
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=77.74 E-value=3.7 Score=35.28 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=37.6
Q ss_pred HhhChHHHHhhcC--CCCCCCHHHHHhhCCCCCCCC-cchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAG--PDAFMSPKDIASQLPTKNPDA-HTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~--~~~~~t~~ela~~~~~~~~~~-~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|++.|.+.. ..-|.|+.|||+.+++ + +.-+.+.|+.|...|+++.
T Consensus 7 ~q~~iL~~l~~~~~~~~~~~~~~ela~~~~~----~s~~tv~~~l~~L~~~g~i~~ 58 (199)
T TIGR00498 7 RQQEVLDLIRAHIESTGYPPSIREIARAVGL----RSPSAAEEHLKALERKGYIER 58 (199)
T ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHhCC----CChHHHHHHHHHHHHCCCEec
Confidence 3445555555310 0136899999999999 7 8899999999999999996
No 395
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=77.74 E-value=4.9 Score=36.19 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=30.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-----CCCeEEEecc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-----PSIKGINFDL 233 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~ 233 (366)
+.+...++|+|||.|.++..+.... +...++.+|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 5677899999999999999999988 5678899996
No 396
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=77.42 E-value=4.2 Score=36.61 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=47.0
Q ss_pred HHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCCCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcE
Q 017777 215 TLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGK 293 (366)
Q Consensus 215 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~ 293 (366)
++..|.+..+..+++++|. +..++.+.+..-+.-...+ .+...+.|+|+++- |......+|+++...+++|+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCCCcE
Confidence 3567888888999999997 7677766544333333332 12233458888753 335566888888888888766
Q ss_pred EEEE
Q 017777 294 VIVA 297 (366)
Q Consensus 294 lli~ 297 (366)
+.=+
T Consensus 75 v~Dv 78 (258)
T PF02153_consen 75 VTDV 78 (258)
T ss_dssp EEE-
T ss_pred EEEe
Confidence 5543
No 397
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=77.05 E-value=2.3 Score=38.17 Aligned_cols=47 Identities=13% Similarity=0.250 Sum_probs=41.2
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
-+..|.+.|.+. +..++.|||+.+++ ++.=++|-|..|...|++.+.
T Consensus 6 R~~~Il~~l~~~---~~~~~~ela~~l~v----S~~TiRRdL~~Le~~g~l~r~ 52 (252)
T PRK10906 6 RHDAIIELVKQQ---GYVSTEELVEHFSV----SPQTIRRDLNDLAEQNKILRH 52 (252)
T ss_pred HHHHHHHHHHHc---CCEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 345577888876 58999999999999 999999999999999999863
No 398
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=76.92 E-value=2.9 Score=26.04 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=26.5
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHH
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRL 84 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~ 84 (366)
++..|+..|.+. +..+..+||+.+|+ ++..+.+=++.
T Consensus 4 ~D~~Il~~Lq~d---~r~s~~~la~~lgl----S~~~v~~Ri~r 40 (42)
T PF13404_consen 4 LDRKILRLLQED---GRRSYAELAEELGL----SESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHH----TTS-HHHHHHHHTS-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCccHHHHHHHHCc----CHHHHHHHHHH
Confidence 456788888886 69999999999999 77766554443
No 399
>PF13518 HTH_28: Helix-turn-helix domain
Probab=76.67 E-value=3.5 Score=26.52 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=28.4
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLN 92 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 92 (366)
..|..++|+.+|+ ++.-+.+|++.....|+-.
T Consensus 12 g~s~~~~a~~~gi----s~~tv~~w~~~y~~~G~~~ 43 (52)
T PF13518_consen 12 GESVREIAREFGI----SRSTVYRWIKRYREGGIEG 43 (52)
T ss_pred CCCHHHHHHHHCC----CHhHHHHHHHHHHhcCHHH
Confidence 3499999999999 9999999999999988643
No 400
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=75.76 E-value=3.3 Score=40.70 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=57.2
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhcC
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKN 119 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~~ 119 (366)
..+..|+..|...+ +..+..+||+.+++ ++..+-+.+..|.+.|+++...+ +...|.+|..++.++..
T Consensus 6 ~~e~~iL~~l~~~~--~~~~~~~la~~~~~----~~~~v~~~~~~L~~kg~v~~~~~------~~~~~~LT~eG~~~~~~ 73 (494)
T PTZ00326 6 LEENTILSKLESEN--EIVNSLALAESLNI----DHQKVVGAIKSLESANYITTEMK------KSNTWTLTEEGEDYLKN 73 (494)
T ss_pred HHHHHHHHHHHhcC--CCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE------EEEEEEECHHHHHHHHc
Confidence 45666778887621 37899999999999 99999999999999999987421 15889999999988876
Q ss_pred CCC
Q 017777 120 EDG 122 (366)
Q Consensus 120 ~~~ 122 (366)
.+|
T Consensus 74 G~P 76 (494)
T PTZ00326 74 GSP 76 (494)
T ss_pred CCH
Confidence 654
No 401
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=75.75 E-value=3 Score=29.63 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=42.1
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..+..+++.++.. ...+.+..+|+..++. +++.+-..++.|...|++.+.
T Consensus 2 ~~~~~~Le~I~rs-R~~Gi~q~~L~~~~~~----D~r~i~~~~k~L~~~gLI~k~ 51 (75)
T PF04182_consen 2 DIQYCLLERIARS-RYNGITQSDLSKLLGI----DPRSIFYRLKKLEKKGLIVKQ 51 (75)
T ss_pred chHHHHHHHHHhc-CCCCEehhHHHHHhCC----CchHHHHHHHHHHHCCCEEEE
Confidence 3566778888864 2357899999999999 999999999999999999963
No 402
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=75.06 E-value=2.7 Score=37.83 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=41.5
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
-+..|.+.|.+. +.+++.|||+.+++ ++.-+||=|+.|+..|++.+.
T Consensus 6 R~~~Il~~L~~~---~~v~v~eLa~~l~V----S~~TIRRDL~~Le~~g~l~r~ 52 (256)
T PRK10434 6 RQAAILEYLQKQ---GKTSVEELAQYFDT----TGTTIRKDLVILEHAGTVIRT 52 (256)
T ss_pred HHHHHHHHHHHc---CCEEHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 345678888886 58999999999999 999999999999999999863
No 403
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=75.05 E-value=3.4 Score=37.72 Aligned_cols=78 Identities=27% Similarity=0.341 Sum_probs=45.1
Q ss_pred CceEEEccCCCCCC------C-CCEEEec-cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhh
Q 017777 245 GVEHVGGDMFVSVP------K-GDAIFIK-WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIH 316 (366)
Q Consensus 245 ~v~~~~~D~~~~~~------~-~D~i~~~-~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 316 (366)
+|+|++.|....++ . .|+|+++ +..|.++++ +.++++|+|.|++ |... .+
T Consensus 201 kVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~~A~Lvv-EtaK-------------fm 258 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAPDAVLVV-ETAK-------------FM 258 (289)
T ss_pred EEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCCCCEEEE-Ecch-------------hh
Confidence 57777777655322 1 2888665 455666543 6668899988777 3210 01
Q ss_pred cchhhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 317 VDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 317 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
.++.- ....--.+.+.+++++|||+.+.
T Consensus 259 vdLrK-----Eq~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 259 VDLRK-----EQLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred eeCCH-----HHHHHHHHHHHHHHHHCCCcccc
Confidence 11100 00011256789999999998754
No 404
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=74.82 E-value=17 Score=33.53 Aligned_cols=91 Identities=13% Similarity=-0.005 Sum_probs=48.7
Q ss_pred CCeEEEEeCCc-cH-HHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCCCCCEEEeccccccCChHHHH
Q 017777 202 LNSVVDVGGGI-GA-TLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCV 278 (366)
Q Consensus 202 ~~~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~~lh~~~~~~~~ 278 (366)
..+|.=||+|. |. ++..+.+.....+++++|. ++..+.+++..-......+..+.....|+|++.-- .....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-----~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-----VGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-----HHHHH
Confidence 35788899885 33 3333443322247888887 55555544322111111121112233488877543 23345
Q ss_pred HHHHHHHHhCCCCcEEEEE
Q 017777 279 KFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 279 ~~L~~~~~~L~pgG~lli~ 297 (366)
.+++.+...++||..++.+
T Consensus 81 ~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 81 AVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred HHHHHHHhhCCCCCEEEeC
Confidence 6778888888888765543
No 405
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=74.54 E-value=8.3 Score=37.36 Aligned_cols=99 Identities=8% Similarity=0.014 Sum_probs=55.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCC--CeEEEecc-hhHHhhCCC-------CCCceEEE---ccCCCCCC--C-CCEEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPS--IKGINFDL-PHVIQDAPA-------FPGVEHVG---GDMFVSVP--K-GDAIF 264 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-------~~~v~~~~---~D~~~~~~--~-~D~i~ 264 (366)
.+..+.|+|.|.|.-.-.+....++ -.++.+|. ..+...... ...+.... .+-+-|.+ . .|+++
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 3567788888766544444444444 34677886 333332211 11121111 11122333 3 39999
Q ss_pred eccccccCChHH-HHHHHHH-HHHhCCCCcEEEEEcc
Q 017777 265 IKWICHDWSDEH-CVKFLKN-CYEALPVNGKVIVAES 299 (366)
Q Consensus 265 ~~~~lh~~~~~~-~~~~L~~-~~~~L~pgG~lli~e~ 299 (366)
+.+.+|+++... ...+.++ .++..++|++++++|.
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 999999986543 2233443 4556789999999886
No 406
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=74.54 E-value=16 Score=33.32 Aligned_cols=87 Identities=18% Similarity=0.063 Sum_probs=53.2
Q ss_pred CeEEEEeCC--ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEE-ccC-CCCCCCCCEEEeccccccCChHHH
Q 017777 203 NSVVDVGGG--IGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVG-GDM-FVSVPKGDAIFIKWICHDWSDEHC 277 (366)
Q Consensus 203 ~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-~D~-~~~~~~~D~i~~~~~lh~~~~~~~ 277 (366)
.+|+=+|.| .|.++..+.+......+++.|. ...++.+... .+.... .+. .......|+|+++--+ ...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~d~~~~~~~~~~~~~aD~VivavPi-----~~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVIDELTVAGLAEAAAEADLVIVAVPI-----EAT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-CcccccccchhhhhcccCCEEEEeccH-----HHH
Confidence 467777877 4556666777777777888886 4444444322 222222 222 1234445999876443 445
Q ss_pred HHHHHHHHHhCCCCcEEE
Q 017777 278 VKFLKNCYEALPVNGKVI 295 (366)
Q Consensus 278 ~~~L~~~~~~L~pgG~ll 295 (366)
..+++++...|+||..+.
T Consensus 78 ~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 78 EEVLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHHHhcccCCCCCEEE
Confidence 688899888888886554
No 407
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=74.21 E-value=2.3 Score=27.27 Aligned_cols=41 Identities=12% Similarity=0.218 Sum_probs=23.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSV 90 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~ 90 (366)
.++.+...+.+ ..|..+||+.+|+ ++.-+.+|++.....|+
T Consensus 6 ~R~~ii~l~~~-----G~s~~~ia~~lgv----s~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 6 RRAQIIRLLRE-----GWSIREIAKRLGV----SRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ----HHHHHHH-----T--HHHHHHHHTS-----HHHHHHHHT-------
T ss_pred HHHHHHHHHHC-----CCCHHHHHHHHCc----CHHHHHHHHHHcccccc
Confidence 34556666666 6899999999999 99999999988776663
No 408
>PRK09954 putative kinase; Provisional
Probab=73.96 E-value=3.6 Score=38.92 Aligned_cols=44 Identities=16% Similarity=0.275 Sum_probs=39.7
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLN 92 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 92 (366)
+..|+..|.+. +++|..|||+.+++ .+..+.+.++-|...|++.
T Consensus 5 ~~~il~~l~~~---~~~s~~~la~~l~~----s~~~v~~~i~~L~~~g~i~ 48 (362)
T PRK09954 5 EKEILAILRRN---PLIQQNEIADILQI----SRSRVAAHIMDLMRKGRIK 48 (362)
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCcC
Confidence 44588888886 49999999999999 9999999999999999997
No 409
>PRK13699 putative methylase; Provisional
Probab=73.79 E-value=15 Score=32.35 Aligned_cols=76 Identities=20% Similarity=0.141 Sum_probs=0.0
Q ss_pred ceEEEccCCC---CCCCC--CEEEecccc-------------ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCC
Q 017777 246 VEHVGGDMFV---SVPKG--DAIFIKWIC-------------HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDT 307 (366)
Q Consensus 246 v~~~~~D~~~---~~~~~--D~i~~~~~l-------------h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~ 307 (366)
+++..+|..+ .+|.. |+|+..--. .....+-....+++++++|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i----------- 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS----------- 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE-----------
Q ss_pred chhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 308 SLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
-........+..+++++||.+....
T Consensus 71 -------------------f~~~~~~~~~~~al~~~GF~l~~~I 95 (227)
T PRK13699 71 -------------------FYGWNRVDRFMAAWKNAGFSVVGHL 95 (227)
T ss_pred -------------------EeccccHHHHHHHHHHCCCEEeeEE
No 410
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=73.71 E-value=3.7 Score=40.07 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=42.8
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
|...|.+ ||.|+.|||+.+++ +...+.+.|..| .|+|... ..|+ ..+|++....+
T Consensus 5 ~~~~L~~----g~~~~~eL~~~l~~----sq~~~s~~L~~L--~~~V~~~----~~gr-~~~Y~l~~~~~ 59 (442)
T PRK09775 5 LTTLLLQ----GPLSAAELAARLGV----SQATLSRLLAAL--GDQVVRF----GKAR-ATRYALLRPLR 59 (442)
T ss_pred HHHHHhc----CCCCHHHHHHHhCC----CHHHHHHHHHHh--hcceeEe----ccCc-eEEEEeccccc
Confidence 4556666 69999999999999 999999999999 8888763 3443 35677766543
No 411
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=73.04 E-value=4.4 Score=31.45 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=35.5
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
|++.+.. |.|+.|||..+++ +...++-++--|...|+|..
T Consensus 48 Il~lC~~-----~~SVAEiAA~L~l----PlgVvrVLvsDL~~~G~v~v 87 (114)
T PF05331_consen 48 ILELCRR-----PLSVAEIAARLGL----PLGVVRVLVSDLADAGLVRV 87 (114)
T ss_pred HHHHHCC-----CccHHHHHHhhCC----CchhhhhhHHHHHhCCCEEE
Confidence 4555554 9999999999999 99999999999999999986
No 412
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=72.88 E-value=7.6 Score=32.63 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=31.9
Q ss_pred CEEEeccccccCCh----------HHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 261 DAIFIKWICHDWSD----------EHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 261 D~i~~~~~lh~~~~----------~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
|+|+++++||++.. +...+++++++.+|+|+..+|....+.
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 99999999998864 345678888888888887777766544
No 413
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=72.74 E-value=2.8 Score=28.62 Aligned_cols=42 Identities=10% Similarity=0.189 Sum_probs=34.6
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
|++.|-.. |+.|..+|.+.+++ +++.++.-|-.|...|++..
T Consensus 18 V~~~Ll~~---G~ltl~~i~~~t~l----~~~~Vk~~L~~LiQh~~v~y 59 (62)
T PF08221_consen 18 VGEVLLSR---GRLTLREIVRRTGL----SPKQVKKALVVLIQHNLVQY 59 (62)
T ss_dssp HHHHHHHC----SEEHHHHHHHHT------HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHc---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCeee
Confidence 56666665 59999999999999 99999999999999999985
No 414
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=72.19 E-value=3.5 Score=37.04 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=41.8
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+..+.+.|.+.| |-.+=+||.+++|+ +..-+.|.|+-|+..|++++.
T Consensus 197 e~~il~~i~~~G--Gri~Q~eL~r~lgl----sktTvsR~L~~LEk~GlIe~~ 243 (258)
T COG2512 197 EKEILDLIRERG--GRITQAELRRALGL----SKTTVSRILRRLEKRGLIEKE 243 (258)
T ss_pred HHHHHHHHHHhC--CEEeHHHHHHhhCC----ChHHHHHHHHHHHhCCceEEE
Confidence 456788888875 67999999999999 999999999999999999974
No 415
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=72.10 E-value=19 Score=31.37 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=58.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCC--eEEEecc-hhHHhhCCCC---------------------------------
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSI--KGINFDL-PHVIQDAPAF--------------------------------- 243 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~--~~~~~D~-~~~~~~a~~~--------------------------------- 243 (366)
+++.++-|=-||.|.++.-+.--+++. .+++-|+ +++++.|+++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 567899999999999888766655442 3566676 7777665441
Q ss_pred ---------------CCceEEEccCCCCC-------CCC-CEEEecc---ccccCC----hHHHHHHHHHHHHhCCCCcE
Q 017777 244 ---------------PGVEHVGGDMFVSV-------PKG-DAIFIKW---ICHDWS----DEHCVKFLKNCYEALPVNGK 293 (366)
Q Consensus 244 ---------------~~v~~~~~D~~~~~-------~~~-D~i~~~~---~lh~~~----~~~~~~~L~~~~~~L~pgG~ 293 (366)
......+.|+|++. +.+ |+|+.-- -+-.|. .+-..++|..++.+|.+++.
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 12457788998732 222 8887632 223442 34467999999999966666
Q ss_pred EEEEc
Q 017777 294 VIVAE 298 (366)
Q Consensus 294 lli~e 298 (366)
+.+.+
T Consensus 210 V~v~~ 214 (246)
T PF11599_consen 210 VAVSD 214 (246)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66644
No 416
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=71.89 E-value=6.3 Score=35.27 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=24.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCC--------CCeEEEecc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYP--------SIKGINFDL 233 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~ 233 (366)
.+.+|+|+|+|+|.++..++.... .++++.++.
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~ 58 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEI 58 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-T
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcC
Confidence 357999999999999999888753 357888885
No 417
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=71.89 E-value=5.7 Score=33.32 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=39.1
Q ss_pred CCHHHHHhhC--CCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchh
Q 017777 58 MSPKDIASQL--PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKF 115 (366)
Q Consensus 58 ~t~~ela~~~--~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~ 115 (366)
.++.+||+++ ++ +..-++.-|+.|...|+++++ . ++.|.-|..+-.
T Consensus 40 ~d~~~iak~l~p~i----s~~ev~~sL~~L~~~gli~k~----~----~g~y~~t~~~l~ 87 (171)
T PF14394_consen 40 PDPEWIAKRLRPKI----SAEEVRDSLEFLEKLGLIKKD----G----DGKYVQTDKSLT 87 (171)
T ss_pred CCHHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEC----C----CCcEEEecceee
Confidence 3999999999 99 999999999999999999974 2 468888875544
No 418
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=71.88 E-value=14 Score=33.44 Aligned_cols=204 Identities=13% Similarity=0.094 Sum_probs=103.6
Q ss_pred CHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhcCCCCCChhHHH-HhhcC-hh
Q 017777 59 SPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLC-LMNQD-KV 136 (366)
Q Consensus 59 t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~-~~~~~-~~ 136 (366)
+.-.|+...++ +-+.+..+++.|...|++..+ ++...+|..+..++..-.-.+..+.- ....+ ..
T Consensus 36 d~wkIvd~s~~----plp~v~~i~~~l~~egiv~~~---------~g~v~~TekG~E~~e~~gi~~~~~~~C~~CeGrgi 102 (354)
T COG1568 36 DFWKIVDYSDL----PLPLVASILEILEDEGIVKIE---------EGGVELTEKGEELAEELGIKKKYDYTCECCEGRGI 102 (354)
T ss_pred chHhhhhhccC----CchHHHHHHHHHHhcCcEEEe---------cCcEeehhhhHHHHHHhCCCccccccccCcCCccc
Confidence 88889999888 899999999999999999974 35589999988777532211111100 00000 00
Q ss_pred HHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHHHHHHHhhhcchhhHHH--HHHhccCCCCCCeEEEEeCCccH
Q 017777 137 LMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKK--ILENYKGFEGLNSVVDVGGGIGA 214 (366)
Q Consensus 137 ~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~--~~~~~~~~~~~~~vLDvG~G~G~ 214 (366)
....+..|.+.++. +....|+-...|.+....-.- .... ++..-+++ .+..|+-+| -.-.
T Consensus 103 ~l~~f~dll~kf~e---------------iaK~RP~p~~~yDQgfvTpEt-tv~Rv~lm~~RGDL-~gK~I~vvG-DDDL 164 (354)
T COG1568 103 SLQAFKDLLEKFRE---------------IAKDRPEPLHQYDQGFVTPET-TVSRVALMYSRGDL-EGKEIFVVG-DDDL 164 (354)
T ss_pred cchhHHHHHHHHHH---------------HHhcCCCcchhcccccccccc-eeeeeeeeccccCc-CCCeEEEEc-Cchh
Confidence 11122233222221 111122222222221111000 0000 11111101 356788898 4334
Q ss_pred HHHHHH-HhCCCCeEEEecc-hhHHhhC----CC--CCCceEEEccCCCCCCCC-----CEEEeccccccCChHHHHHHH
Q 017777 215 TLNMII-SKYPSIKGINFDL-PHVIQDA----PA--FPGVEHVGGDMFVSVPKG-----DAIFIKWICHDWSDEHCVKFL 281 (366)
Q Consensus 215 ~~~~l~-~~~p~~~~~~~D~-~~~~~~a----~~--~~~v~~~~~D~~~~~~~~-----D~i~~~~~lh~~~~~~~~~~L 281 (366)
.+.+++ ...|. ++.++|+ ...++.. ++ ..+++.+..|...|+|+. |+++.--.- +-.....+|
T Consensus 165 tsia~aLt~mpk-~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpe---Ti~alk~Fl 240 (354)
T COG1568 165 TSIALALTGMPK-RIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPE---TIKALKLFL 240 (354)
T ss_pred hHHHHHhcCCCc-eEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCchh---hHHHHHHHH
Confidence 444333 33344 6777776 3333322 22 367999999999998852 887752110 001234556
Q ss_pred HHHHHhCCCC---cEEEEE
Q 017777 282 KNCYEALPVN---GKVIVA 297 (366)
Q Consensus 282 ~~~~~~L~pg---G~lli~ 297 (366)
.+=...||.- |++-|.
T Consensus 241 gRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 241 GRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred hccHHHhcCCCccceEeee
Confidence 6666677654 666664
No 419
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=71.68 E-value=5.3 Score=29.74 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=33.3
Q ss_pred HHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHh
Q 017777 38 KSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLA 86 (366)
Q Consensus 38 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~ 86 (366)
..+.++||+..|-+ +++|-.|||+.+|+ +...+.|+=+.|.
T Consensus 40 ~l~~R~~i~~~Ll~----~~~tQrEIa~~lGi----S~atIsR~sn~lk 80 (94)
T TIGR01321 40 DLGDRIRIVNELLN----GNMSQREIASKLGV----SIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHHh----CCCCHHHHHHHhCC----ChhhhhHHHhhcc
Confidence 35678999998877 48999999999999 7777777666654
No 420
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=71.61 E-value=3.8 Score=37.12 Aligned_cols=47 Identities=6% Similarity=0.116 Sum_probs=41.5
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
-...|++.|.+. +..++.|||+.+++ ++.=++|=|..|...|++.+.
T Consensus 18 R~~~Il~~L~~~---~~vtv~eLa~~l~V----S~~TIRRDL~~Le~~G~l~r~ 64 (269)
T PRK09802 18 RREQIIQRLRQQ---GSVQVNDLSALYGV----STVTIRNDLAFLEKQGIAVRA 64 (269)
T ss_pred HHHHHHHHHHHc---CCEeHHHHHHHHCC----CHHHHHHHHHHHHhCCCeEEE
Confidence 455678888886 48999999999999 999999999999999999974
No 421
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.96 E-value=39 Score=31.39 Aligned_cols=95 Identities=17% Similarity=0.179 Sum_probs=64.4
Q ss_pred CCCCCeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEE---Ec-----cCCC----CCC-C-CCE
Q 017777 199 FEGLNSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHV---GG-----DMFV----SVP-K-GDA 262 (366)
Q Consensus 199 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~---~~-----D~~~----~~~-~-~D~ 262 (366)
+....+||-+|+| .|.++...++.+.-.++++.|+ +..++.|++. +.+.. .. ++.+ -.. . .|+
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~-Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF-GATVTDPSSHKSSPQELAELVEKALGKKQPDV 245 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh-CCeEEeeccccccHHHHHHHHHhhccccCCCe
Confidence 6678999999999 6778888888888889999998 8888888863 11111 11 1111 011 1 277
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
.+-...++ ..++....++++||.+++...-.+
T Consensus 246 ~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 246 TFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred EEEccCch--------HHHHHHHHHhccCCEEEEeccCCC
Confidence 76665553 346667789999999888775443
No 422
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=70.71 E-value=2.8 Score=28.64 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=30.4
Q ss_pred CCC-CHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFM-SPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..+ |..+||+.+++ +..-+++-|+.|++.|+++..
T Consensus 22 ~~lps~~~la~~~~v----sr~tvr~al~~L~~~g~i~~~ 57 (64)
T PF00392_consen 22 DRLPSERELAERYGV----SRTTVREALRRLEAEGLIERR 57 (64)
T ss_dssp SBE--HHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CEeCCHHHHHHHhcc----CCcHHHHHHHHHHHCCcEEEE
Confidence 467 99999999999 999999999999999999963
No 423
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=70.69 E-value=4.4 Score=33.64 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=33.2
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.|+|++||++++|+ +.+.+..-|+.|...|++.+.
T Consensus 40 ~Pmtl~Ei~E~lg~----Sks~vS~~lkkL~~~~lV~~~ 74 (177)
T COG1510 40 KPLTLDEIAEALGM----SKSNVSMGLKKLQDWNLVKKV 74 (177)
T ss_pred CCccHHHHHHHHCC----CcchHHHHHHHHHhcchHHhh
Confidence 59999999999999 999999999999999999875
No 424
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=70.51 E-value=29 Score=31.84 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=50.3
Q ss_pred CCeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCCCC-CEEEeccccccCChHHHH
Q 017777 202 LNSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVPKG-DAIFIKWICHDWSDEHCV 278 (366)
Q Consensus 202 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~-D~i~~~~~lh~~~~~~~~ 278 (366)
..++|=+||| .|.++..+++...-..++++|. ++.++.+.... + .|..+..+.+ |+|+-.-- . .
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~---~--i~~~~~~~~g~Dvvid~~G-----~---~ 211 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE---V--LDPEKDPRRDYRAIYDASG-----D---P 211 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc---c--cChhhccCCCCCEEEECCC-----C---H
Confidence 4567878865 6778888888765434666675 44454444321 1 1111112223 77764311 1 2
Q ss_pred HHHHHHHHhCCCCcEEEEEcc
Q 017777 279 KFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 279 ~~L~~~~~~L~pgG~lli~e~ 299 (366)
..+..+.+.|+|+|+++++-.
T Consensus 212 ~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 212 SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred HHHHHHHHhhhcCcEEEEEee
Confidence 457788889999999998764
No 425
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=70.42 E-value=4.5 Score=39.19 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=32.5
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.|.|.++|++++++ +++.++++|+.|...|++.+
T Consensus 309 ~~~t~~~La~~l~~----~~~~v~~iL~~L~~agLI~~ 342 (412)
T PRK04214 309 KALDVDEIRRLEPM----GYDELGELLCELARIGLLRR 342 (412)
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCeEe
Confidence 58999999999999 99999999999999999986
No 426
>PRK12423 LexA repressor; Provisional
Probab=70.42 E-value=4.7 Score=34.81 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=30.3
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+-|..|||+.+|+. .+..++..|+.|+..|+|+..
T Consensus 25 ~Ps~~eia~~~g~~---s~~~v~~~l~~L~~~G~l~~~ 59 (202)
T PRK12423 25 PPSLAEIAQAFGFA---SRSVARKHVQALAEAGLIEVV 59 (202)
T ss_pred CCCHHHHHHHhCCC---ChHHHHHHHHHHHHCCCEEec
Confidence 56999999999941 677889999999999999963
No 427
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=70.00 E-value=6.8 Score=34.40 Aligned_cols=49 Identities=14% Similarity=0.164 Sum_probs=42.9
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
-..-.|||+.+|+ .+.++...++-|+..|+++.. | .++|.+|+.+..++
T Consensus 25 ~v~q~eIA~~lgi----T~QaVsehiK~Lv~eG~i~~~------g--R~~Y~iTkkG~e~l 73 (260)
T COG1497 25 RVKQKEIAKKLGI----TLQAVSEHIKELVKEGLIEKE------G--RGEYEITKKGAEWL 73 (260)
T ss_pred CCCHHHHHHHcCC----CHHHHHHHHHHHHhccceeec------C--CeeEEEehhHHHHH
Confidence 6799999999999 999999999999999999962 2 57999999987444
No 428
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=69.16 E-value=6.6 Score=32.03 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 32 VLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 32 ~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
-.+++......-.||+.|.+ +++|.+||.+..|- +. ++-|.+|-..|+++.
T Consensus 9 Pll~~f~s~~~kkV~~~Ls~----~W~T~~El~e~~G~----d~---~~~L~~LkK~gLiE~ 59 (160)
T PF09824_consen 9 PLLQTFNSEVYKKVYDELSK----GWMTEEELEEKYGK----DV---RESLLILKKGGLIES 59 (160)
T ss_pred HHHHHhCCHHHHHHHHHHHh----ccCCHHHHHHHHCc----CH---HHHHHHHHHcCchhh
Confidence 34566677788899999999 59999999999997 54 789999999999984
No 429
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=69.10 E-value=24 Score=26.44 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=46.8
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCc------cCCHHHHHHHHH
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGK------ERTEQEFRALAK 341 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~t~~e~~~ll~ 341 (366)
+|=|++.++..++|+.+...-+ |.+++.=. |.. .....+...-. .+|++. ...++++.+.+.
T Consensus 4 vLIHYp~~d~~~~l~~La~~t~--~~~ifTfA--P~T-------~~L~~m~~iG~-lFP~~dRsp~i~~~~e~~l~~~l~ 71 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLASRTR--GSLIFTFA--PRT-------PLLALMHAIGK-LFPRPDRSPRIYPHREEDLRRALA 71 (97)
T ss_pred eEeccCHHHHHHHHHHHHHhcc--CcEEEEEC--CCC-------HHHHHHHHHhc-cCCCCCCCCcEEEeCHHHHHHHHH
Confidence 3435588889999999988643 66666321 111 11111111111 123322 237899999999
Q ss_pred HcCCceeEEEECCCce
Q 017777 342 AAGFQGFQVVSSAFNT 357 (366)
Q Consensus 342 ~aGf~~~~~~~~~~~~ 357 (366)
++||++.+...+..++
T Consensus 72 ~~g~~~~r~~ris~gF 87 (97)
T PF07109_consen 72 AAGWRIGRTERISSGF 87 (97)
T ss_pred hCCCeeeecccccCcC
Confidence 9999998887776544
No 430
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=69.04 E-value=8.6 Score=30.37 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=44.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCCCC---CC-CEEEeccccccCChHH
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVP---KG-DAIFIKWICHDWSDEH 276 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~---~~-D~i~~~~~lh~~~~~~ 276 (366)
...+|++||-|.=.-....++... +.++..|..+. .+. .++.++.-|+++|-. .+ |+|.+... ..+
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G-~dV~~tDi~~~--~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiRP-----P~E 82 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG-FDVIATDINPR--KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIRP-----PPE 82 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEEES-------TT
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC-CcEEEEECccc--ccc--cCcceeeecccCCCHHHhcCCcEEEEeCC-----ChH
Confidence 356999999997654444444433 78999997332 222 789999999998643 34 88887543 233
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccc
Q 017777 277 CVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 277 ~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
....+-++.+.. |.-++|....
T Consensus 83 l~~~il~lA~~v--~adlii~pL~ 104 (127)
T PF03686_consen 83 LQPPILELAKKV--GADLIIRPLG 104 (127)
T ss_dssp SHHHHHHHHHHH--T-EEEEE-BT
T ss_pred HhHHHHHHHHHh--CCCEEEECCC
Confidence 444455555543 5667765543
No 431
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=68.87 E-value=4.2 Score=28.99 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=23.9
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHh
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLA 86 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~ 86 (366)
|+..|..+ .|+|+.+||.++|. ....++..|..+-
T Consensus 29 LLr~LA~G---~PVt~~~LA~a~g~----~~e~v~~~L~~~p 63 (77)
T PF12324_consen 29 LLRLLAKG---QPVTVEQLAAALGW----PVEEVRAALAAMP 63 (77)
T ss_dssp HHHHHTTT---S-B-HHHHHHHHT------HHHHHHHHHH-T
T ss_pred HHHHHHcC---CCcCHHHHHHHHCC----CHHHHHHHHHhCC
Confidence 78888885 69999999999999 7766666665554
No 432
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=68.45 E-value=5.7 Score=35.02 Aligned_cols=44 Identities=20% Similarity=0.356 Sum_probs=38.9
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.||+.|... +|-++..+||+++|+ ++..+++=++.|++.|+++.
T Consensus 187 ~IL~~L~~~--egrlse~eLAerlGV----SRs~ireAlrkLE~aGvIe~ 230 (251)
T TIGR02787 187 HIFEELDGN--EGLLVASKIADRVGI----TRSVIVNALRKLESAGVIES 230 (251)
T ss_pred HHHHHhccc--cccccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 477888762 268999999999999 99999999999999999995
No 433
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=68.15 E-value=8.6 Score=36.30 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=31.7
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL 233 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~ 233 (366)
.++..+.++.+...++|||.|.|+++..+.-. -++.+.++|-
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~-y~lsV~aIeg 184 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLG-YGLSVKAIEG 184 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhc-cCceEEEecc
Confidence 34444444667899999999999999866654 4678999985
No 434
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=68.15 E-value=11 Score=33.52 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=44.1
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.+...+|||+.++- +|--+|..+..|-++|+++- .+|+ .+.|.-|..+-..+
T Consensus 24 r~IKgeeIA~~l~r----npGTVRNqmq~LkaLgLVeg-----vpGP-kGGY~PT~kAYe~L 75 (294)
T COG2524 24 RPIKGEEIAEVLNR----NPGTVRNQMQSLKALGLVEG-----VPGP-KGGYKPTSKAYEAL 75 (294)
T ss_pred CCcchHHHHHHHcc----CcchHHHHHHHHHhcCcccc-----ccCC-CCCccccHHHHHHh
Confidence 69999999999999 99999999999999999995 4565 58888887665433
No 435
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=68.09 E-value=34 Score=31.01 Aligned_cols=120 Identities=14% Similarity=0.147 Sum_probs=67.5
Q ss_pred eEEEEeCCccHHHHHHHHhCCCCe-EEEecc-hhHHhhCCCC-CCceEEEccCCC-C----CCCCCEEEeccccccCCh-
Q 017777 204 SVVDVGGGIGATLNMIISKYPSIK-GINFDL-PHVIQDAPAF-PGVEHVGGDMFV-S----VPKGDAIFIKWICHDWSD- 274 (366)
Q Consensus 204 ~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~----~~~~D~i~~~~~lh~~~~- 274 (366)
+++|+-||.|.+...+.+.. .+ +..+|. +.+++..+.+ +.. +..+|+.+ . .+..|+++...-...++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 68999999999998888753 44 456776 6666554433 332 56677765 2 122399887554333321
Q ss_pred -------HHHHHHHHHHHH---hCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcC
Q 017777 275 -------EHCVKFLKNCYE---ALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAG 344 (366)
Q Consensus 275 -------~~~~~~L~~~~~---~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 344 (366)
+....++..+.+ .++| .++++|.+..-. . ........+|.+.|++.|
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~~~P--~~~v~ENV~g~~--------------------~-~~~~~~~~~i~~~l~~~G 135 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKEKKP--KYFLLENVKGLL--------------------T-HDNGNTLKVILNTLEELG 135 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHhcCC--CEEEEEcCcchh--------------------c-cCchHHHHHHHHHHHhCC
Confidence 111223333333 3344 366666553210 0 011124677888899999
Q ss_pred CceeE
Q 017777 345 FQGFQ 349 (366)
Q Consensus 345 f~~~~ 349 (366)
|.+..
T Consensus 136 Y~~~~ 140 (275)
T cd00315 136 YNVYW 140 (275)
T ss_pred cEEEE
Confidence 98643
No 436
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=67.83 E-value=5.7 Score=35.32 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=39.7
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+..|.+.|.+. +..+++|||+.+++ ++.-++|-|..|...|.+.+
T Consensus 6 ~~~Il~~l~~~---~~~~~~eLa~~l~V----S~~TiRRdL~~L~~~~~l~r 50 (240)
T PRK10411 6 QQAIVDLLLNH---TSLTTEALAEQLNV----SKETIRRDLNELQTQGKILR 50 (240)
T ss_pred HHHHHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 34577888875 59999999999999 99999999999999999985
No 437
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=67.28 E-value=5.7 Score=33.51 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=30.9
Q ss_pred CCCHHHHHhhC-CCCCCCCcchHHHHHHHHhccccccc
Q 017777 57 FMSPKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 57 ~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
..+-.+||..+ |+ ++.-++|.+..|+..|+|..
T Consensus 70 fpSN~~La~r~~G~----s~~tlrR~l~~LveaGLI~r 103 (177)
T PF03428_consen 70 FPSNAQLAERLNGM----SERTLRRHLARLVEAGLIVR 103 (177)
T ss_pred ecCHHHHHHHHcCC----CHHHHHHHHHHHHHCCCeee
Confidence 45889999999 99 99999999999999999997
No 438
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=66.84 E-value=7.7 Score=32.65 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=41.1
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
++..|+|.|...+ ...|+.+||+++|+ +.+-+.|-|.-|...|.|...
T Consensus 5 ~~~~i~~~l~~~~--~~~~a~~i~k~l~i----~k~~vNr~LY~L~~~~~v~~~ 52 (183)
T PHA02701 5 CASLILTLLSSSG--DKLPAKRIAKELGI----SKHEANRCLYRLLESDAVSCE 52 (183)
T ss_pred HHHHHHHHHHhcC--CCCcHHHHHHHhCc----cHHHHHHHHHHHhhcCcEecC
Confidence 4567889999863 25999999999999 888899999999999999763
No 439
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=66.82 E-value=25 Score=28.84 Aligned_cols=76 Identities=24% Similarity=0.217 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHhhCh-------HHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCc
Q 017777 30 ASVLPMVLKSAIELDL-------LEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGK 102 (366)
Q Consensus 30 ~~~~~~~l~~a~~lgl-------f~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~ 102 (366)
+-|...|+.++.+.++ +..+.-. |-|+++.+|+..++.. +-+.+.--|+-|...|+++.. ..|+
T Consensus 66 ~rW~vrCmAaag~~~ls~~e~l~lH~irhr--dR~K~laDic~~ln~e---Dth~itYslrKL~k~gLit~t----~~gk 136 (199)
T COG5631 66 GRWQVRCMAAAGEFSLSGPENLLLHIIRHR--DRPKSLADICQMLNRE---DTHNITYSLRKLLKGGLITRT----GSGK 136 (199)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHhhc--CchhhHHHHHHHhccc---cchhHHHHHHHHHhccceecC----CCCc
Confidence 4577778887766653 3334332 3699999999999982 667778889999999999974 4554
Q ss_pred cccccccchhchh
Q 017777 103 VERLYGLAPVCKF 115 (366)
Q Consensus 103 ~~~~y~~t~~~~~ 115 (366)
+-+|..|+.+..
T Consensus 137 -evTy~vTa~G~~ 148 (199)
T COG5631 137 -EVTYEVTALGHR 148 (199)
T ss_pred -eEEEEEecchHH
Confidence 467888877653
No 440
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=65.00 E-value=7.2 Score=34.00 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=37.8
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.|++.+.++. ++.|.+|||+++++ ++.-++..+..|+..|++..+
T Consensus 166 ~Vl~~~~~g~--~g~s~~eIa~~l~i----S~~Tv~~~~~~~~~~~~~~~~ 210 (225)
T PRK10046 166 AVRKLFKEPG--VQHTAETVAQALTI----SRTTARRYLEYCASRHLIIAE 210 (225)
T ss_pred HHHHHHHcCC--CCcCHHHHHHHhCc----cHHHHHHHHHHHHhCCeEEEE
Confidence 4667776621 25899999999999 999999999999999999864
No 441
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=64.64 E-value=8.5 Score=24.20 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=19.6
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHH
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILR 83 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~ 83 (366)
++..+.+ +.|+.+||+.+|+ +..-+.|+|+
T Consensus 14 i~~l~~~-----G~si~~IA~~~gv----sr~TvyR~l~ 43 (45)
T PF02796_consen 14 IKELYAE-----GMSIAEIAKQFGV----SRSTVYRYLN 43 (45)
T ss_dssp HHHHHHT-----T--HHHHHHHTTS-----HHHHHHHHC
T ss_pred HHHHHHC-----CCCHHHHHHHHCc----CHHHHHHHHh
Confidence 3445554 5999999999999 7776666653
No 442
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=64.52 E-value=5 Score=34.12 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=40.2
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+-.|.+.|.+. +..++.+||+.+++ ++.=+||=|..|+..|.+.+
T Consensus 9 ~~~Il~~l~~~---~~~~~~~La~~~~v----S~~TiRRDl~~L~~~g~~~r 53 (185)
T PRK04424 9 QKALQELIEEN---PFITDEELAEKFGV----SIQTIRLDRMELGIPELRER 53 (185)
T ss_pred HHHHHHHHHHC---CCEEHHHHHHHHCc----CHHHHHHHHHHHhcchHHHH
Confidence 44567888886 58999999999999 99999999999999999996
No 443
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=64.18 E-value=8 Score=31.53 Aligned_cols=43 Identities=21% Similarity=0.351 Sum_probs=36.5
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccc
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLN 92 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 92 (366)
.-|++.|-.. +.+|-++||+.+|+ +..-++++|..|...+++.
T Consensus 4 ~~v~d~L~~~---~~~~dedLa~~l~i----~~n~vRkiL~~L~ed~~~~ 46 (147)
T smart00531 4 FLVLDALMRN---GCVTEEDLAELLGI----KQKQLRKILYLLYDEKLIK 46 (147)
T ss_pred EeehHHHHhc---CCcCHHHHHHHhCC----CHHHHHHHHHHHHhhhcch
Confidence 3577877765 58999999999999 9999999999999966653
No 444
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=64.14 E-value=7.4 Score=36.18 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=37.8
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLN 92 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 92 (366)
...|++.|.+. .+.+..+||+.+++ +...+.+.++.|...|++-
T Consensus 6 ~~~il~~L~~~---~~~s~~~LA~~lgv----sr~tV~~~l~~L~~~G~~i 49 (319)
T PRK11886 6 MLQLLSLLADG---DFHSGEQLGEELGI----SRAAIWKHIQTLEEWGLDI 49 (319)
T ss_pred HHHHHHHHHcC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCce
Confidence 34677777764 47899999999999 9999999999999999944
No 445
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=64.05 E-value=12 Score=26.28 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=37.0
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.|...++. +..|.+||-+.+|+ +..-+...|.-|+..|++++
T Consensus 9 ~IL~~ls~----~c~TLeeL~ekTgi----~k~~LlV~LsrL~k~GiI~R 50 (72)
T PF05584_consen 9 KILIILSK----RCCTLEELEEKTGI----SKNTLLVYLSRLAKRGIIER 50 (72)
T ss_pred HHHHHHHh----ccCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeee
Confidence 35566666 48999999999999 99999999999999999996
No 446
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=63.93 E-value=5.3 Score=28.27 Aligned_cols=33 Identities=15% Similarity=0.035 Sum_probs=30.3
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
..|..|||+.+++ ++..++.++..+...|.+.+
T Consensus 32 GlS~kEIAe~LGI----S~~TVk~~l~~~~~~~~~~~ 64 (73)
T TIGR03879 32 GKTASEIAEELGR----TEQTVRNHLKGETKAGGLVK 64 (73)
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHhcCcccchHHH
Confidence 7899999999999 99999999999998888863
No 447
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=63.84 E-value=9.9 Score=38.15 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=45.2
Q ss_pred hhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCe-EEEecchhHHhhCCCCCCceEEEccCCC
Q 017777 186 TITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIK-GINFDLPHVIQDAPAFPGVEHVGGDMFV 255 (366)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~D~~~ 255 (366)
.+-+-++-..|.-+.....|||++|..|.++.-.++..|--. ++++|+.++. ..+++..++.|+..
T Consensus 29 aFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik----p~~~c~t~v~dItt 95 (780)
T KOG1098|consen 29 AFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK----PIPNCDTLVEDITT 95 (780)
T ss_pred HHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc----cCCccchhhhhhhH
Confidence 334446777776456778999999999999999999988443 6889974332 12445555555543
No 448
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=63.66 E-value=10 Score=30.77 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=51.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCCCCC----C-CEE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVPK----G-DAI 263 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~~----~-D~i 263 (366)
+.+....+.+ -..-|||+|=|.|..=..|.+.+|+-+++++|..-.+.-.---+.=.++.||+.+..+. + .+.
T Consensus 18 L~~a~~~v~~--~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~ 95 (160)
T PF12692_consen 18 LNWAAAQVAG--LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAA 95 (160)
T ss_dssp HHHHHHHTTT----S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EE
T ss_pred HHHHHHHhcC--CCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceE
Confidence 3344444442 23789999999999999999999999999999521111000013346777887662211 1 233
Q ss_pred EeccccccCChHHHHHHH----HHHHHhCCCCcEEEEEcccc
Q 017777 264 FIKWICHDWSDEHCVKFL----KNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 264 ~~~~~lh~~~~~~~~~~L----~~~~~~L~pgG~lli~e~~~ 301 (366)
+...=+-.-..++-.... .-+..+|.|||.++-...+.
T Consensus 96 laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 96 LAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp EEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred EEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 322222111122222233 33456778999888765544
No 449
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=63.36 E-value=7.1 Score=37.50 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=30.0
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA 242 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 242 (366)
+...|||||.|||.++...+.+..+ .++.++. -+|.+.+++
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~ark 107 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARK 107 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHH
Confidence 4568999999999999988877644 4677764 555555543
No 450
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=63.34 E-value=7.7 Score=26.06 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=31.1
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLA 86 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~ 86 (366)
-++.|++.|-+. +..|.++||+.+++ .++-++.-+..|-
T Consensus 6 rq~~Ll~~L~~~---~~~~~~ela~~l~~----S~rti~~~i~~L~ 44 (59)
T PF08280_consen 6 RQLKLLELLLKN---KWITLKELAKKLNI----SERTIKNDINELN 44 (59)
T ss_dssp HHHHHHHHHHHH---TSBBHHHHHHHCTS-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCcHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 456778888775 59999999999999 8888887777765
No 451
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=63.21 E-value=6.2 Score=32.89 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=38.5
Q ss_pred CCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 58 MSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 58 ~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
.|.++||+.+++ +.+-+.|.+..|...+||.+. . .+.|.++|...
T Consensus 76 ~t~~~ia~~l~i----S~~Tv~r~ik~L~e~~iI~k~----~----~G~Y~iNP~~~ 120 (165)
T PF05732_consen 76 ATQKEIAEKLGI----SKPTVSRAIKELEEKNIIKKI----R----NGAYMINPNFF 120 (165)
T ss_pred eeHHHHHHHhCC----CHHHHHHHHHHHHhCCcEEEc----c----CCeEEECcHHh
Confidence 488999999999 999999999999999999973 2 47888887543
No 452
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=62.95 E-value=5.2 Score=31.19 Aligned_cols=67 Identities=24% Similarity=0.367 Sum_probs=47.3
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCC-CCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNP-DAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~-~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
+..+.-|++.|.+.+ .+.|++||.+.+.-+.+ .+..-+-|.|+.|+..|++.+... .+| ...|....
T Consensus 7 T~~R~~Il~~l~~~~--~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~--~~~--~~~Y~~~~ 74 (120)
T PF01475_consen 7 TPQRLAILELLKESP--EHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEF--GDG--ESRYELST 74 (120)
T ss_dssp HHHHHHHHHHHHHHS--SSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEE--TTS--EEEEEESS
T ss_pred CHHHHHHHHHHHcCC--CCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEc--CCC--cceEeecC
Confidence 456777889998864 59999999999864221 255568999999999999997521 122 35666654
No 453
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=62.60 E-value=9.4 Score=37.19 Aligned_cols=90 Identities=11% Similarity=0.074 Sum_probs=52.3
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEE------Eecc-hhHHhhCCCCCCceEEEccCCCCCCCCCEEEeccccccCCh
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGI------NFDL-PHVIQDAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSD 274 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~------~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~~lh~~~~ 274 (366)
..+|+-||||+=..+.++--+-.+++++ ++|. ....+.+.+ +.+. ..+..+-.+.+|+|++. .||
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~-dGF~--v~~~~Ea~~~ADvVviL-----lPD 107 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE-NGFK--VGTYEELIPQADLVINL-----TPD 107 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh-cCCc--cCCHHHHHHhCCEEEEc-----CCh
Confidence 5899999999755554444333444444 2222 122222221 2222 12222234556988763 355
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.....+.+++...||||..|.+..-
T Consensus 108 t~q~~v~~~i~p~LK~Ga~L~fsHG 132 (487)
T PRK05225 108 KQHSDVVRAVQPLMKQGAALGYSHG 132 (487)
T ss_pred HHHHHHHHHHHhhCCCCCEEEecCC
Confidence 5556777999999999999988664
No 454
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=62.33 E-value=9.5 Score=32.04 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=39.4
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..|++.|.+. |-+|-++||..+++ ...-++++|..|...|++...
T Consensus 21 ~~v~~~l~~k---ge~tDeela~~l~i----~~~~vrriL~~L~e~~li~~~ 65 (176)
T COG1675 21 VLVVDALLEK---GELTDEELAELLGI----KKNEVRRILYALYEDGLISYR 65 (176)
T ss_pred hHHHHHHHhc---CCcChHHHHHHhCc----cHHHHHHHHHHHHhCCceEEE
Confidence 4577888775 47999999999999 999999999999999999853
No 455
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=61.69 E-value=6.8 Score=28.67 Aligned_cols=46 Identities=28% Similarity=0.365 Sum_probs=36.4
Q ss_pred hHHHHhhc-CCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 45 LLEIIAKA-GPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 45 lf~~L~~~-~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.||.|... +.-.-+|+..||+++++ .-.+.++.|+-|+..|++...
T Consensus 28 t~dkl~kEV~~~K~ITps~lserlkI----~~SlAr~~Lr~L~~kG~Ik~V 74 (86)
T PRK09334 28 LLKRVAKEVKKEKIVTPYTLASKYGI----KISVAKKVLRELEKRGVLVLY 74 (86)
T ss_pred HHHHHHHHhccCcEEcHHHHHHHhcc----hHHHHHHHHHHHHHCCCEEEE
Confidence 44544432 22246799999999999 999999999999999999754
No 456
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=61.57 E-value=7.1 Score=35.02 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=41.2
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+-.|++.|.+. |.++++|||+.+++ ++.=+||=|+.|+..|+|.+.
T Consensus 7 ~~~Il~~l~~~---g~v~v~eLa~~~~V----S~~TIRRDL~~Le~~g~l~R~ 52 (253)
T COG1349 7 HQKILELLKEK---GKVSVEELAELFGV----SEMTIRRDLNELEEQGLLLRV 52 (253)
T ss_pred HHHHHHHHHHc---CcEEHHHHHHHhCC----CHHHHHHhHHHHHHCCcEEEE
Confidence 34578888886 59999999999999 999999999999999999973
No 457
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=61.08 E-value=7.6 Score=33.30 Aligned_cols=33 Identities=12% Similarity=0.382 Sum_probs=31.7
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
++|-++||+.+|+ .+.-+.|.|+.|...|++..
T Consensus 168 ~~t~~~lA~~lG~----tr~tvsR~l~~l~~~gii~~ 200 (211)
T PRK11753 168 KITRQEIGRIVGC----SREMVGRVLKMLEDQGLISA 200 (211)
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEe
Confidence 7899999999999 99999999999999999986
No 458
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=61.07 E-value=27 Score=34.77 Aligned_cols=92 Identities=13% Similarity=0.139 Sum_probs=55.6
Q ss_pred CCCeEEEEeCCcc-HHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC--------------C--------
Q 017777 201 GLNSVVDVGGGIG-ATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV--------------S-------- 256 (366)
Q Consensus 201 ~~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~--------------~-------- 256 (366)
++.+++-+|+|.= ..+..+++.. +..++++|. +...+.++.. ..+++..|..+ +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 3589999999954 5666666664 456888886 6666666542 23333333210 0
Q ss_pred C----CCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 257 V----PKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 257 ~----~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
+ .+.|+++..-.+..-+.+ .-+.++..+.||||+.++-
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCEEEE
Confidence 1 123998665544332222 2467888899999998654
No 459
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=60.74 E-value=13 Score=28.47 Aligned_cols=81 Identities=23% Similarity=0.231 Sum_probs=44.7
Q ss_pred CCccHHHHHHHHhC--CCCeEEEecc-hhHHhhCCCCCCceEEEccCCCC--C---C--CCCEEEeccccccCChHHHHH
Q 017777 210 GGIGATLNMIISKY--PSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVS--V---P--KGDAIFIKWICHDWSDEHCVK 279 (366)
Q Consensus 210 ~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~--~---~--~~D~i~~~~~lh~~~~~~~~~ 279 (366)
||.|.++..+++.+ .+.+++++|. ++.++.+++ ..+.++.+|..++ . . ..|.+++..- +++....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-EGVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-TTSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-cccccccccchhhhHHhhcCccccCEEEEccC----CHHHHHH
Confidence 45556666555543 3457888886 666666553 3488999998873 1 1 2366655321 2333333
Q ss_pred HHHHHHHhCCCCcEEEE
Q 017777 280 FLKNCYEALPVNGKVIV 296 (366)
Q Consensus 280 ~L~~~~~~L~pgG~lli 296 (366)
+. ...+.+.|..+++.
T Consensus 79 ~~-~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 79 IA-LLARELNPDIRIIA 94 (116)
T ss_dssp HH-HHHHHHTTTSEEEE
T ss_pred HH-HHHHHHCCCCeEEE
Confidence 33 34455567767665
No 460
>PRK01381 Trp operon repressor; Provisional
Probab=60.48 E-value=11 Score=28.26 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=29.6
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHH
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLL 85 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L 85 (366)
.+.+++|+..|-. |.+|-.|||+.+|+ +..-+.|--++|
T Consensus 41 l~~R~~I~~~L~~----g~~sQREIa~~lGv----SiaTITRgsn~L 79 (99)
T PRK01381 41 LGTRVRIVEELLR----GELSQREIKQELGV----GIATITRGSNSL 79 (99)
T ss_pred HHHHHHHHHHHHc----CCcCHHHHHHHhCC----ceeeehhhHHHh
Confidence 4678999999988 58999999999999 444444444433
No 461
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=60.14 E-value=5.7 Score=24.42 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=21.4
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLAS 87 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~ 87 (366)
.+.++++||+.+|+ ++..+.|..+....
T Consensus 7 ~~~~l~~iA~~~g~----S~~~f~r~Fk~~~g 34 (42)
T PF00165_consen 7 QKLTLEDIAEQAGF----SPSYFSRLFKKETG 34 (42)
T ss_dssp SS--HHHHHHHHTS-----HHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHCC----CHHHHHHHHHHHHC
Confidence 48999999999999 99999998876543
No 462
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=59.90 E-value=43 Score=31.28 Aligned_cols=93 Identities=13% Similarity=0.092 Sum_probs=52.4
Q ss_pred CCCCeEEEEeCC-ccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCCCCCEEEeccccccCChHH
Q 017777 200 EGLNSVVDVGGG-IGATLNMIISK-YPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEH 276 (366)
Q Consensus 200 ~~~~~vLDvG~G-~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~~lh~~~~~~ 276 (366)
....+||-+||| .|.++..++++ ....+++++|. ++-++.+++.... ....+. ......|+|+=.-- . ..
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~-~~~~~~-~~~~g~d~viD~~G-~----~~ 234 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET-YLIDDI-PEDLAVDHAFECVG-G----RG 234 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce-eehhhh-hhccCCcEEEECCC-C----Cc
Confidence 456788989976 45556667765 45567888886 5555555432111 111111 11101276663211 0 00
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 277 CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 277 ~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
....++...+.|+|||+++++-.
T Consensus 235 ~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 235 SQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred cHHHHHHHHHhCcCCcEEEEEee
Confidence 12468888889999999998764
No 463
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=59.73 E-value=38 Score=30.41 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=62.3
Q ss_pred HHHhccCCCCCCeEEE--EeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC---CCceEEEccCCC---CC--CCC-
Q 017777 192 ILENYKGFEGLNSVVD--VGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF---PGVEHVGGDMFV---SV--PKG- 260 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLD--vG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---~~v~~~~~D~~~---~~--~~~- 260 (366)
+.+.++ ......||- -.+|.|.++.++++......+-+....+-.+.++++ .-|.+..-|+.+ .+ +.+
T Consensus 138 l~e~y~-vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKGV 216 (336)
T KOG1197|consen 138 LFEAYN-VKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKGV 216 (336)
T ss_pred HHHhcC-CCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCCc
Confidence 344555 666666654 457788899999988766555444445555555554 234555556544 23 344
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
|+++=+- -...++.-..+|||+|+++-.-..
T Consensus 217 d~vyDsv---------G~dt~~~sl~~Lk~~G~mVSfG~a 247 (336)
T KOG1197|consen 217 DAVYDSV---------GKDTFAKSLAALKPMGKMVSFGNA 247 (336)
T ss_pred eeeeccc---------cchhhHHHHHHhccCceEEEeccc
Confidence 7776321 235588889999999999986654
No 464
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=59.16 E-value=21 Score=26.78 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=46.0
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCC----CCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTK----NPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~----~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
|+-.|.+ +|.+--||.+.++-. -..++.-+-+.|+-|+..|+|+........|+..-.|.+|+.++.++.
T Consensus 9 iL~~L~~----~~~~GYei~~~l~~~~~~~~~i~~gtlY~~L~rLe~~GlI~~~~~~~~~~~~rk~y~iT~~Gr~~l~ 82 (100)
T TIGR03433 9 ILKTLSL----GPLHGYGIAQRIQQISEDVLQVEEGSLYPALHRLERRGWIAAEWGESENNRRAKFYRLTAAGRKQLA 82 (100)
T ss_pred HHHHHhc----CCCCHHHHHHHHHHHcCCccccCCCcHHHHHHHHHHCCCeEEEeeecCCCCCceEEEECHHHHHHHH
Confidence 4555665 488888888875321 112788899999999999999963111111211356999988886663
No 465
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=59.13 E-value=8.2 Score=32.53 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=31.8
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
|+|-+|||+.+|+ .+.-+.|.|+.|...|+++.
T Consensus 143 ~~t~~~iA~~lG~----tretvsR~l~~l~~~g~I~~ 175 (193)
T TIGR03697 143 RLSHQAIAEAIGS----TRVTITRLLGDLRKKKLISI 175 (193)
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEe
Confidence 7899999999999 99999999999999999996
No 466
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=58.61 E-value=20 Score=29.58 Aligned_cols=63 Identities=19% Similarity=0.099 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECC
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 354 (366)
+--..+++-+++.|.|||+|.| |.+.+.. .. .++. .|......-+-..|.++||+.++-+-.+
T Consensus 63 ~~E~~l~~~~~~~l~pg~~lfV-eY~~D~e----------T~---~~L~---~G~pp~~TrLG~~Ll~~GFtwfKdWYfP 125 (170)
T PF06557_consen 63 PLEDELYKLFSRYLEPGGRLFV-EYVEDRE----------TR---RQLQ---RGVPPAETRLGFSLLKAGFTWFKDWYFP 125 (170)
T ss_dssp HHHHHHHHHHHTT----SEEEE-E-TT-HH----------HH---HHHH---TT--GGGSHHHHHHHTTT--EEEEEE--
T ss_pred hHHHHHHHHHHHHhhhcCeEEE-EEecCHH----------HH---HHHH---cCCCcccchhHHHHHhCCcEEEeeeecc
Confidence 3336899999999999999988 3322110 00 1111 2333334457788999999998876654
No 467
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=58.52 E-value=3.5 Score=27.40 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=28.5
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
|-++...||++.|+ ..+-+-.-||-|.+.|+++.
T Consensus 3 g~lvas~iAd~~Gi----TRSvIVNALRKleSaGvIes 36 (61)
T PF08222_consen 3 GRLVASKIADRVGI----TRSVIVNALRKLESAGVIES 36 (61)
T ss_dssp EEE-HHHHHHHHT------HHHHHHHHHHHHHTTSEEE
T ss_pred ceehHHHHHHHhCc----cHHHHHHHHHHHHhcCceee
Confidence 46789999999999 99999999999999999995
No 468
>PHA02591 hypothetical protein; Provisional
Probab=58.00 E-value=14 Score=26.29 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=24.5
Q ss_pred HHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHH
Q 017777 46 LEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILR 83 (366)
Q Consensus 46 f~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~ 83 (366)
-..|.+. +.|.++||+.||+ +.+.+++.|+
T Consensus 52 A~eL~eq----GlSqeqIA~~LGV----sqetVrKYL~ 81 (83)
T PHA02591 52 THELARK----GFTVEKIASLLGV----SVRKVRRYLE 81 (83)
T ss_pred HHHHHHc----CCCHHHHHHHhCC----CHHHHHHHHh
Confidence 3455663 7999999999999 9998888776
No 469
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=57.19 E-value=9.3 Score=33.50 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=31.7
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
|+|-++||+.+|+ .+..+.|.|+.|...|+++.
T Consensus 184 ~lt~~~iA~~lG~----sr~tvsR~l~~l~~~g~I~~ 216 (235)
T PRK11161 184 TMTRGDIGNYLGL----TVETISRLLGRFQKSGMLAV 216 (235)
T ss_pred cccHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEe
Confidence 7899999999999 99999999999999999996
No 470
>COG0640 ArsR Predicted transcriptional regulators [Transcription]
Probab=56.86 E-value=17 Score=26.44 Aligned_cols=54 Identities=15% Similarity=0.301 Sum_probs=45.2
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..++....+..++..|.+. .+.++.+|+..+++ +...+.+.|..|...|++...
T Consensus 19 ~~~l~~~~r~~il~~l~~~---~~~~~~~l~~~~~~----~~~~v~~hL~~L~~~glv~~~ 72 (110)
T COG0640 19 LKALADPTRLEILSLLAEG---GELTVGELAEALGL----SQSTVSHHLKVLREAGLVELR 72 (110)
T ss_pred HHHhCCHHHHHHHHHHHhc---CCccHHHHHHHHCC----ChhHHHHHHHHHHHCCCeEEE
Confidence 3455555778888888773 27899999999999 999999999999999999973
No 471
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=56.60 E-value=28 Score=32.45 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=58.5
Q ss_pred CCCCCeEEEEe--CCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCC---CceEEEccCCCC---C-C-CC-CEEEecc
Q 017777 199 FEGLNSVVDVG--GGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFP---GVEHVGGDMFVS---V-P-KG-DAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~---~v~~~~~D~~~~---~-~-~~-D~i~~~~ 267 (366)
+....+||=.| +|.|.++.+|++......++....++-.+.+++.. -+.+...|+.+. . + .+ |+|+-.-
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 66678899888 45678999999998754444444443333444331 233334443331 1 1 23 8887431
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
-...+.+..+.|+++|+++.+-...
T Consensus 220 ---------G~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 220 ---------GGDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred ---------CHHHHHHHHHHhccCCEEEEEecCC
Confidence 1256777888999999999988765
No 472
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=56.28 E-value=14 Score=25.09 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.7
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHH
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRI 81 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~ 81 (366)
|.++..+||+.+|+ ++.-++.|
T Consensus 21 g~i~lkdIA~~Lgv----s~~tIr~W 42 (60)
T PF10668_consen 21 GKIKLKDIAEKLGV----SESTIRKW 42 (60)
T ss_pred CCccHHHHHHHHCC----CHHHHHHH
Confidence 68999999999999 88877776
No 473
>COG3398 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.58 E-value=34 Score=29.81 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=42.4
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
-.+.+++..+.+.| ..+..|+.+.+++ +..-++-.||.|.+.+.++-.
T Consensus 101 s~R~~Iy~~i~~nP---G~~lsEl~~nl~i----~R~TlRyhlriLe~~~li~a~ 148 (240)
T COG3398 101 SKRDGIYNYIKPNP---GFSLSELRANLYI----NRSTLRYHLRILESNPLIEAG 148 (240)
T ss_pred hhHHHHHHHhccCC---CccHHHHHHhcCC----ChHHHHHHHHHHHhCcchhhh
Confidence 34677889998875 8999999999999 999999999999999999853
No 474
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=55.24 E-value=16 Score=33.18 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=37.6
Q ss_pred CCCHHHHHhhCC--CCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 57 FMSPKDIASQLP--TKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 57 ~~t~~ela~~~~--~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
..++++||+.++ + +..-++.-|+.|...|+++++ . ++.|.-|..+-
T Consensus 137 ~~~~~~ia~~l~p~i----s~~ev~~sL~~L~~~glikk~----~----~g~y~~t~~~l 184 (271)
T TIGR02147 137 ADDPEELAKRCFPKI----SAEQVKESLDLLERLGLIKKN----E----DGFYKQTDKAV 184 (271)
T ss_pred CCCHHHHHHHhCCCC----CHHHHHHHHHHHHHCCCeeEC----C----CCcEEeeccee
Confidence 447899999998 6 788899999999999999973 2 57788886543
No 475
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=54.78 E-value=10 Score=29.76 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=39.9
Q ss_pred HHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhcCC
Q 017777 62 DIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120 (366)
Q Consensus 62 ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~~~ 120 (366)
+||+.+++ +-+-|-.+++++..+|+++.. +|-..+|+.++.++..+
T Consensus 2 ~La~~l~~----eiDdL~p~~eAaelLgf~~~~---------~Gdi~LT~~G~~f~~a~ 47 (120)
T PF09821_consen 2 QLADELHL----EIDDLLPIVEAAELLGFAEVE---------EGDIRLTPLGRRFAEAD 47 (120)
T ss_pred chHHHhCC----cHHHHHHHHHHHHHcCCeeec---------CCcEEeccchHHHHHCC
Confidence 57889999 888899999999999999973 58899999999888544
No 476
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=54.13 E-value=8.7 Score=34.75 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=26.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHH
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVI 237 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~ 237 (366)
...+|||+|||.|......+.... .++..+|. .+++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl 152 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVL 152 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc-ceeeeEecchhhe
Confidence 468999999999998887776542 56666665 4444
No 477
>PRK09273 hypothetical protein; Provisional
Probab=53.94 E-value=15 Score=31.70 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=35.3
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGG 251 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~ 251 (366)
.....=++||||.-..-.+.++|+++.-.+--+.....++++.+..+++.
T Consensus 63 ~~d~GIliCGTGiG~siAANK~pGIraalc~d~~sA~lar~hNnaNVL~L 112 (211)
T PRK09273 63 AVDFVVTGCGTGQGAMLALNSFPGVVCGYCIDPTDAYLFAQINNGNALSL 112 (211)
T ss_pred CCCEEEEEcCcHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcEEEE
Confidence 34456789999999999999999998755533666666666555444443
No 478
>COG4901 Ribosomal protein S25 [Translation, ribosomal structure and biogenesis]
Probab=53.60 E-value=19 Score=27.14 Aligned_cols=48 Identities=25% Similarity=0.291 Sum_probs=38.4
Q ss_pred hChHHHHhhc-CCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 43 LDLLEIIAKA-GPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 43 lglf~~L~~~-~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
-.+|+.+.+. +...-+|+-.||.+.|+ +-...+..||-|...|+|...
T Consensus 44 ee~~~ki~KEV~~~r~VTpy~la~r~gI----~~SvAr~vLR~LeeeGvv~lv 92 (107)
T COG4901 44 EELLDKIRKEVPRERVVTPYVLASRYGI----NGSVARIVLRHLEEEGVVQLV 92 (107)
T ss_pred HHHHHHHHHhcccceeecHHHHHHHhcc----chHHHHHHHHHHHhCCceeee
Confidence 3455555543 22357899999999999 999999999999999999875
No 479
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=53.43 E-value=71 Score=29.52 Aligned_cols=122 Identities=11% Similarity=0.081 Sum_probs=60.3
Q ss_pred CCCeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hh-HHhhCCCCCCceEEEcc-CCCCCCCCCEEEeccccccCChHH
Q 017777 201 GLNSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PH-VIQDAPAFPGVEHVGGD-MFVSVPKGDAIFIKWICHDWSDEH 276 (366)
Q Consensus 201 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~-~~~~a~~~~~v~~~~~D-~~~~~~~~D~i~~~~~lh~~~~~~ 276 (366)
...+|+-||+| .|......+......+++++|. ++ ..+.+++... .....+ ..+.....|+|+..-.--+ .
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~-~~~~~~~~~~~l~~aDvVi~at~~~~---~- 251 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG-NAVPLDELLELLNEADVVISATGAPH---Y- 251 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC-eEEeHHHHHHHHhcCCEEEECCCCCc---h-
Confidence 46889999987 3444444444433346777776 33 3344443322 232222 1112334599987644322 1
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHH
Q 017777 277 CVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKA 342 (366)
Q Consensus 277 ~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 342 (366)
..+++.+.+.. +++..+++|...|.+-.+. ..+ .++-..+..++|+++.++
T Consensus 252 -~~~~~~~~~~~-~~~~~~viDlavPrdi~~~-------v~~------l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 252 -AKIVERAMKKR-SGKPRLIVDLAVPRDIEPE-------VGE------LEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred -HHHHHHHHhhC-CCCCeEEEEeCCCCCCchh-------hcc------CCCcEEEEHHHhHHHHHH
Confidence 23344433332 3455667777665431110 000 134556677778776654
No 480
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=53.42 E-value=10 Score=28.98 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=36.6
Q ss_pred hHHHHhhc-CCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 45 LLEIIAKA-GPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 45 lf~~L~~~-~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.||.|..+ +.-.-+|+..||+++++ .-.+.++.|+.|++.|++...
T Consensus 46 ~~~kl~kEV~~~K~ITp~~lserlkI----~~SlAr~~Lr~L~~kG~Ik~V 92 (105)
T PF03297_consen 46 TYDKLLKEVPKMKLITPSVLSERLKI----NGSLARKALRELESKGLIKPV 92 (105)
T ss_dssp HHHHHHHHCTTSSCECHHHHHHHHCC----SCHHHHHHHHHHHHCCSSEEE
T ss_pred HHHHHHHHhccCcEeeHHHHHHhHhh----HHHHHHHHHHHHHHCCCEEEE
Confidence 45555432 11235799999999999 999999999999999999864
No 481
>PRK11524 putative methyltransferase; Provisional
Probab=53.42 E-value=27 Score=31.89 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=0.0
Q ss_pred CCceEEEccCCC---CCCCC--CEEEeccccccCCh--------------HHHHHHHHHHHHhCCCCcEEEEE
Q 017777 244 PGVEHVGGDMFV---SVPKG--DAIFIKWICHDWSD--------------EHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 244 ~~v~~~~~D~~~---~~~~~--D~i~~~~~lh~~~~--------------~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
...+++++|..+ .++.. |+|++.--...-.+ +-....|+.++++|||||.+++.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
No 482
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=53.39 E-value=12 Score=31.84 Aligned_cols=34 Identities=6% Similarity=0.265 Sum_probs=32.1
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
-|+|-++||+.+|+ .+.-+.|.|.-|...|+++.
T Consensus 148 ~~~t~~~iA~~lG~----tretvsR~l~~l~~~g~I~~ 181 (202)
T PRK13918 148 IYATHDELAAAVGS----VRETVTKVIGELSREGYIRS 181 (202)
T ss_pred ecCCHHHHHHHhCc----cHHHHHHHHHHHHHCCCEEc
Confidence 37899999999999 99999999999999999995
No 483
>PRK00135 scpB segregation and condensation protein B; Reviewed
Probab=53.29 E-value=23 Score=30.17 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=35.1
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+.++..+... +|+|..+|++..|+ +. ..+++.|...|++..
T Consensus 93 LEtLaiIay~---qPiTr~eI~~irGv----~~---~~ii~~L~~~gLI~e 133 (188)
T PRK00135 93 LEVLAIIAYK---QPITRIEIDEIRGV----NS---DGALQTLLAKGLIKE 133 (188)
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHCC----CH---HHHHHHHHHCCCeEE
Confidence 4567778776 59999999999999 64 689999999999985
No 484
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=53.02 E-value=88 Score=29.08 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=51.7
Q ss_pred CCCeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEE---ccCCC--CCCC-CCEEEeccccccC
Q 017777 201 GLNSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVG---GDMFV--SVPK-GDAIFIKWICHDW 272 (366)
Q Consensus 201 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~---~D~~~--~~~~-~D~i~~~~~lh~~ 272 (366)
...+||-+||| .|.++..+++...-.++++.|. ++-.+.+++..--.++. .++.+ .... .|+++-.-
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~----- 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS----- 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC-----
Confidence 45678878876 5666777777654335777775 66666665432111111 11111 0111 27765431
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.. ...+..+.+.|+|||+++++..
T Consensus 244 G~---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 GH---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CC---HHHHHHHHHHhhcCCEEEEEcc
Confidence 11 1357778889999999999864
No 485
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=52.98 E-value=15 Score=30.71 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=42.5
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCC-CCcchHHHHHHHHhcccccccc
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNP-DAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~-~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+..+.-|++.|...+ +++|+++|.+.+.-..+ .+..-+.|.|+.|+..|+|.+.
T Consensus 25 T~qR~~IL~~l~~~~--~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 25 TPQRLEVLRLMSLQP--GAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred CHHHHHHHHHHHhcC--CCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 556777888888653 69999999999875222 2566688999999999999874
No 486
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=52.38 E-value=1.3e+02 Score=27.53 Aligned_cols=91 Identities=20% Similarity=0.201 Sum_probs=53.0
Q ss_pred CCCCCeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCC-------CC-CC-CEEEecc
Q 017777 199 FEGLNSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVS-------VP-KG-DAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~-------~~-~~-D~i~~~~ 267 (366)
+....+||..|+| .|..+..+++... .+++..+. ++..+.+++. .+..+..+-... .+ .+ |+++-+.
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~ 240 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKEL-GADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV 240 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHh-CCCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence 5566788888876 4788888888764 56777764 5554444332 122221111100 11 22 7765321
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.. ...++.+.+.|+++|+++....
T Consensus 241 g~--------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 241 GT--------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CC--------HHHHHHHHHHhhcCCEEEEECC
Confidence 11 1457788899999999998754
No 487
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=52.13 E-value=18 Score=32.91 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=52.8
Q ss_pred hhHHhhCCCC-CCceEEEccCCC-C--CCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 234 PHVIQDAPAF-PGVEHVGGDMFV-S--VPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 234 ~~~~~~a~~~-~~v~~~~~D~~~-~--~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
+.+.+.++.. .||.++.+|+.+ - -|.+ |-+++..+-.++++.+...++..+++-+.||.++|+-....
T Consensus 296 ~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRtaae 369 (414)
T COG5379 296 EGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTAAE 369 (414)
T ss_pred hhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEecccc
Confidence 3344444332 689999999876 1 2333 99999999999999999999999999999999999976544
No 488
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=51.58 E-value=15 Score=31.59 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=32.4
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..++-.+||+.+|+ +..-++.-|+.|+..|+|+..
T Consensus 33 ~~L~e~~La~~lgV----SRtpVReAL~~L~~eGlv~~~ 67 (212)
T TIGR03338 33 AKLNESDIAARLGV----SRGPVREAFRALEEAGLVRNE 67 (212)
T ss_pred CEecHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEe
Confidence 57899999999999 999999999999999999963
No 489
>PRK13239 alkylmercury lyase; Provisional
Probab=51.44 E-value=16 Score=31.54 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=31.1
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLA 86 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~ 86 (366)
+..-|+..|.++ .|.|+.+||+.+|. +...++..|+.|.
T Consensus 23 ~~~~llr~la~G---~pvt~~~lA~~~~~----~~~~v~~~L~~l~ 61 (206)
T PRK13239 23 LLVPLLRLLAKG---RPVSVTTLAAALGW----PVEEVEAVLEAMP 61 (206)
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHhCC----CHHHHHHHHHhCC
Confidence 344567778865 69999999999999 8888887777765
No 490
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=51.32 E-value=3.7 Score=28.89 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=31.2
Q ss_pred CCCCHHHHHhhC---CCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQL---PTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~---~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
++.+..++|+.+ +.+. ..+++-.++.+|+++|++++.
T Consensus 23 ~~i~l~~ia~~l~~~~~k~--~~RRlYDI~NVLealgli~K~ 62 (71)
T PF02319_consen 23 KSISLNEIADKLISENVKT--QRRRLYDIINVLEALGLIEKQ 62 (71)
T ss_dssp TEEEHHHHHHHCHHHCCHH--HCHHHHHHHHHHHHCTSEEEE
T ss_pred CcccHHHHHHHHccccccc--ccchhhHHHHHHHHhCceeec
Confidence 589999999999 6521 567889999999999999973
No 491
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=51.12 E-value=13 Score=32.67 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=31.5
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
|+|-++||+.+|+ .+.-+.|.|+.|...|+++.
T Consensus 179 ~lt~~~IA~~lGi----sretlsR~L~~L~~~GlI~~ 211 (230)
T PRK09391 179 PMSRRDIADYLGL----TIETVSRALSQLQDRGLIGL 211 (230)
T ss_pred cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEe
Confidence 6899999999999 99999999999999999985
No 492
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=50.93 E-value=16 Score=22.84 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=15.7
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHH
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILR 83 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~ 83 (366)
..|..+||+.+|. ++.-+.+.|+
T Consensus 20 G~s~~~IA~~lg~----s~sTV~relk 42 (44)
T PF13936_consen 20 GMSIREIAKRLGR----SRSTVSRELK 42 (44)
T ss_dssp ---HHHHHHHTT------HHHHHHHHH
T ss_pred CCCHHHHHHHHCc----CcHHHHHHHh
Confidence 7999999999999 8888877765
No 493
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=50.90 E-value=48 Score=30.72 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=57.1
Q ss_pred CCeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--CCceEEEccCCC---CCCCCCEEEeccccccCCh
Q 017777 202 LNSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--PGVEHVGGDMFV---SVPKGDAIFIKWICHDWSD 274 (366)
Q Consensus 202 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~---~~~~~D~i~~~~~lh~~~~ 274 (366)
+.+|.-||+| .|..+..++.- -+.+++++|+ .+-+...... .|+.+.--+... .....|+++-.-.+---.+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 4678889999 46666666654 3568888887 4444443322 455555444332 3445588876544433222
Q ss_pred HHHHHHHHHHHHhCCCCcEEEE
Q 017777 275 EHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli 296 (366)
+ .-+.++..+.||||+.|+=
T Consensus 247 P--kLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 247 P--KLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred c--eehhHHHHHhcCCCcEEEE
Confidence 3 3567888999999998864
No 494
>PTZ00357 methyltransferase; Provisional
Probab=50.68 E-value=50 Score=34.07 Aligned_cols=128 Identities=11% Similarity=0.049 Sum_probs=71.7
Q ss_pred CchhhcccCchHHHHHHHHhhhcchhhHH------------HH------HHhccCC---CCCCeEEEEeCCccHHHHHHH
Q 017777 162 NAFDYHGKDLRFNKIFNNGMSSHSTITMK------------KI------LENYKGF---EGLNSVVDVGGGIGATLNMII 220 (366)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~------------~~------~~~~~~~---~~~~~vLDvG~G~G~~~~~l~ 220 (366)
..|+.+++|+-....|.+++...-..+.+ .+ +.+.+.- .....|+-+|+|.|-+....+
T Consensus 640 ~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraL 719 (1072)
T PTZ00357 640 GVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECL 719 (1072)
T ss_pred hhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHH
Confidence 35777888888777888777543211110 00 0111100 112468999999999888766
Q ss_pred HhCC----CCeEEEecc-hhHH---hhCC-C-C----------CCceEEEccCCC-CCC-------------CCCEEEec
Q 017777 221 SKYP----SIKGINFDL-PHVI---QDAP-A-F----------PGVEHVGGDMFV-SVP-------------KGDAIFIK 266 (366)
Q Consensus 221 ~~~p----~~~~~~~D~-~~~~---~~a~-~-~----------~~v~~~~~D~~~-~~~-------------~~D~i~~~ 266 (366)
+... .++++.++- |..+ .... . . .+|+++..|+.. ..+ ..|++|+
T Consensus 720 rAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVS- 798 (1072)
T PTZ00357 720 HAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVS- 798 (1072)
T ss_pred HHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehH-
Confidence 6643 456677763 3321 1111 1 1 248999999987 322 1377765
Q ss_pred cccccCChHH-HHHHHHHHHHhCCC
Q 017777 267 WICHDWSDEH-CVKFLKNCYEALPV 290 (366)
Q Consensus 267 ~~lh~~~~~~-~~~~L~~~~~~L~p 290 (366)
..|--|.|.| ..+-|..+.+.||+
T Consensus 799 ELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 799 ELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred hhhcccccccCCHHHHHHHHHhhhh
Confidence 4455555443 23556666777765
No 495
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=50.55 E-value=1.6e+02 Score=25.55 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=53.2
Q ss_pred CCCCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CC--------CCC-CEEEec
Q 017777 199 FEGLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SV--------PKG-DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~--------~~~-D~i~~~ 266 (366)
.....+||..|+|. |..+..+++... .++++++. +...+.+++...-.++ |... .. ... |+++-.
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADHVI--DYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCceec--cCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 35678999999985 777777777655 67777775 4444443322111111 1111 00 122 777643
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
- +.. ..+..+.+.|+++|+++......
T Consensus 209 ~-----~~~---~~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 209 V-----GGP---ETLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred C-----CCH---HHHHHHHHhcccCCEEEEEccCC
Confidence 1 111 34677778899999999876543
No 496
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=50.27 E-value=21 Score=22.87 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.1
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHH
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLL 85 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L 85 (366)
..+..+||+.+++ ++..+++.++-+
T Consensus 18 g~s~~eia~~l~i----s~~tv~~~~~~~ 42 (58)
T smart00421 18 GLTNKEIAERLGI----SEKTVKTHLSNI 42 (58)
T ss_pred CCCHHHHHHHHCC----CHHHHHHHHHHH
Confidence 6899999999999 888887777654
No 497
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.21 E-value=71 Score=29.62 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=65.1
Q ss_pred EEEEeCCccHHHHHHHHhCCCCeE-EEecc-hhHHhhCCC-CCCceEEEccCCC-C---CCCCCEEEeccccccCC----
Q 017777 205 VVDVGGGIGATLNMIISKYPSIKG-INFDL-PHVIQDAPA-FPGVEHVGGDMFV-S---VPKGDAIFIKWICHDWS---- 273 (366)
Q Consensus 205 vLDvG~G~G~~~~~l~~~~p~~~~-~~~D~-~~~~~~a~~-~~~v~~~~~D~~~-~---~~~~D~i~~~~~lh~~~---- 273 (366)
|+|+=||.|.+...+.+. +.++ ..+|+ +..++..+. ++. .+..+|+.+ . .++.|+++...-...|+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 589999999999988774 4555 34676 444444332 233 445667765 2 33448886643333222
Q ss_pred ----hHHHHHHHHHHHHh---CCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 274 ----DEHCVKFLKNCYEA---LPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 274 ----~~~~~~~L~~~~~~---L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
++....++....++ ++| .++++|.+..- +. ...+ ....+|.+.|++.||.
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~~P--~~~v~ENV~~l-------------~~------~~~~--~~~~~i~~~l~~~GY~ 134 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEKKP--KFFLLENVKGL-------------VS------HDKG--RTFKVIIETLEELGYK 134 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhcCC--CEEEeeccHHH-------------Hh------cccc--hHHHHHHHHHHhCCCE
Confidence 11122333333333 355 46666654311 00 0011 2356788888999998
Q ss_pred eeE
Q 017777 347 GFQ 349 (366)
Q Consensus 347 ~~~ 349 (366)
+..
T Consensus 135 v~~ 137 (315)
T TIGR00675 135 VYY 137 (315)
T ss_pred EEE
Confidence 643
No 498
>PF05344 DUF746: Domain of Unknown Function (DUF746); InterPro: IPR008008 This is a short conserved region found in some transposons.
Probab=50.06 E-value=19 Score=24.75 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.0
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHh
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLA 86 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~ 86 (366)
++++.+.|+.+|+ ++..+.+|++.--
T Consensus 13 ~~s~~~Aa~~lG~----~~~~v~~wv~~fR 38 (65)
T PF05344_consen 13 QISVAQAADRLGT----DPGTVRRWVRMFR 38 (65)
T ss_pred cccHHHHHHHHCc----CHHHHHHHHHHHH
Confidence 9999999999999 9999888887654
No 499
>PRK11642 exoribonuclease R; Provisional
Probab=50.02 E-value=18 Score=38.27 Aligned_cols=48 Identities=23% Similarity=0.269 Sum_probs=37.3
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
|++.|.+.+ .|++..+|++.++++.......+++.|+.|...|.|.+.
T Consensus 24 Il~~l~~~~--~~~~~~~L~~~l~l~~~~~~~~l~~~L~~L~~~g~l~~~ 71 (813)
T PRK11642 24 ILEHLTKRE--KPASREELAVELNIEGEEQLEALRRRLRAMERDGQLVFT 71 (813)
T ss_pred HHHHHHhcC--CCCCHHHHHHHhCCCChHHHHHHHHHHHHHHHCCCEEEc
Confidence 566665432 699999999999993333346699999999999999863
No 500
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=49.95 E-value=24 Score=34.50 Aligned_cols=101 Identities=16% Similarity=0.139 Sum_probs=66.2
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC----C---CC---CCCEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV----S---VP---KGDAI 263 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~----~---~~---~~D~i 263 (366)
....+|-||-|.|.+...+...+|....+++.+ |++++.++.+ .|.+++-.|-.+ . .+ ..|++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 356788888888999998888889888877776 9999888764 233333333221 1 11 12777
Q ss_pred Ee----ccccccC--ChH--HHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 264 FI----KWICHDW--SDE--HCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 264 ~~----~~~lh~~--~~~--~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
+. .. -|.+ |.. -+..+|..++..|+|.|.++|.=...+
T Consensus 375 ~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 375 MVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 65 12 3332 222 245889999999999999976544443
Done!