Query 017777
Match_columns 366
No_of_seqs 183 out of 2186
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 04:46:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3reo_A (ISO)eugenol O-methyltr 100.0 3E-55 1E-59 415.3 36.5 366 1-366 1-368 (368)
2 3p9c_A Caffeic acid O-methyltr 100.0 6.7E-55 2.3E-59 412.1 35.4 359 1-364 5-364 (364)
3 4a6d_A Hydroxyindole O-methylt 100.0 7.2E-55 2.5E-59 410.2 30.5 332 17-365 5-346 (353)
4 3lst_A CALO1 methyltransferase 100.0 1.4E-48 4.6E-53 367.3 32.8 325 16-364 18-347 (348)
5 3gwz_A MMCR; methyltransferase 100.0 2.2E-48 7.6E-53 368.5 27.5 323 19-365 37-369 (369)
6 1zg3_A Isoflavanone 4'-O-methy 100.0 1.4E-47 4.7E-52 361.9 30.6 343 16-364 6-358 (358)
7 1fp1_D Isoliquiritigenin 2'-O- 100.0 1.8E-47 6.2E-52 362.8 30.5 357 4-364 7-372 (372)
8 3i53_A O-methyltransferase; CO 100.0 6.9E-48 2.4E-52 360.3 24.7 315 23-364 8-331 (332)
9 2ip2_A Probable phenazine-spec 100.0 6.7E-47 2.3E-51 353.9 31.2 322 16-364 4-333 (334)
10 1fp2_A Isoflavone O-methyltran 100.0 1.2E-46 4.1E-51 354.6 30.7 337 15-364 11-352 (352)
11 1qzz_A RDMB, aclacinomycin-10- 100.0 1.2E-44 4.1E-49 343.7 26.2 330 13-365 9-356 (374)
12 3dp7_A SAM-dependent methyltra 100.0 8.7E-45 3E-49 343.1 24.9 330 12-365 7-355 (363)
13 1tw3_A COMT, carminomycin 4-O- 100.0 2.9E-44 9.8E-49 339.5 25.2 327 17-366 16-357 (360)
14 2r3s_A Uncharacterized protein 100.0 4E-43 1.4E-47 328.3 28.0 317 22-365 8-335 (335)
15 1x19_A CRTF-related protein; m 100.0 1.3E-42 4.4E-47 328.0 28.9 312 18-365 28-359 (359)
16 3mcz_A O-methyltransferase; ad 100.0 8.9E-43 3E-47 328.2 25.5 327 7-366 10-350 (352)
17 4gek_A TRNA (CMO5U34)-methyltr 99.9 1.2E-21 4.3E-26 175.8 15.3 165 199-365 68-257 (261)
18 3dtn_A Putative methyltransfer 99.8 3.3E-19 1.1E-23 157.3 16.8 175 190-365 33-226 (234)
19 3hnr_A Probable methyltransfer 99.8 3.8E-18 1.3E-22 149.0 15.4 170 191-365 36-212 (220)
20 3dlc_A Putative S-adenosyl-L-m 99.8 4.3E-19 1.5E-23 154.5 7.6 169 189-362 33-212 (219)
21 3dh0_A SAM dependent methyltra 99.8 3.3E-18 1.1E-22 149.3 12.9 157 189-365 26-193 (219)
22 3ou2_A SAM-dependent methyltra 99.7 3.4E-17 1.2E-21 142.5 15.5 158 190-352 35-204 (218)
23 3pfg_A N-methyltransferase; N, 99.7 7.7E-18 2.6E-22 151.3 11.7 165 200-366 49-250 (263)
24 1ve3_A Hypothetical protein PH 99.7 3.4E-18 1.2E-22 149.9 8.4 170 189-365 29-227 (227)
25 3ujc_A Phosphoethanolamine N-m 99.7 2.9E-17 1E-21 147.4 14.2 156 189-354 44-207 (266)
26 1vl5_A Unknown conserved prote 99.7 1.8E-17 6.2E-22 148.6 12.7 155 188-353 25-190 (260)
27 3dli_A Methyltransferase; PSI- 99.7 8.5E-17 2.9E-21 142.5 15.4 151 189-354 29-185 (240)
28 1xtp_A LMAJ004091AAA; SGPP, st 99.7 2.4E-17 8.2E-22 147.0 10.7 149 190-354 83-239 (254)
29 1kpg_A CFA synthase;, cyclopro 99.7 1.8E-16 6.1E-21 144.2 15.5 162 189-353 53-228 (287)
30 3bus_A REBM, methyltransferase 99.7 1.3E-16 4.6E-21 143.9 14.4 157 189-354 50-217 (273)
31 1xxl_A YCGJ protein; structura 99.7 1.6E-16 5.6E-21 140.7 13.7 154 189-353 10-174 (239)
32 3ocj_A Putative exported prote 99.7 7E-17 2.4E-21 148.4 11.2 168 199-366 116-305 (305)
33 3hem_A Cyclopropane-fatty-acyl 99.7 2.8E-16 9.6E-21 144.1 15.2 163 189-354 61-244 (302)
34 2o57_A Putative sarcosine dime 99.7 2E-16 7E-21 144.5 14.2 154 189-353 67-234 (297)
35 3bxo_A N,N-dimethyltransferase 99.7 1.1E-16 3.6E-21 141.4 11.7 164 200-365 39-239 (239)
36 3h2b_A SAM-dependent methyltra 99.7 7.3E-17 2.5E-21 139.0 10.2 146 202-363 42-193 (203)
37 3i9f_A Putative type 11 methyl 99.7 4.6E-17 1.6E-21 136.3 8.4 148 192-365 9-160 (170)
38 3vc1_A Geranyl diphosphate 2-C 99.7 3.9E-16 1.3E-20 143.9 14.6 155 188-353 104-269 (312)
39 3e23_A Uncharacterized protein 99.7 1.6E-16 5.4E-21 137.9 11.3 138 199-353 41-182 (211)
40 1nkv_A Hypothetical protein YJ 99.7 2.2E-16 7.5E-21 141.0 12.2 153 189-353 25-187 (256)
41 3jwg_A HEN1, methyltransferase 99.7 4.3E-16 1.5E-20 135.9 13.8 159 200-366 28-211 (219)
42 1pjz_A Thiopurine S-methyltran 99.7 1.3E-16 4.3E-21 137.9 10.2 141 191-353 13-176 (203)
43 2fk8_A Methoxy mycolic acid sy 99.7 4.3E-16 1.5E-20 143.9 14.4 163 189-353 79-254 (318)
44 3mgg_A Methyltransferase; NYSG 99.7 9.9E-17 3.4E-21 145.0 9.9 152 199-353 35-198 (276)
45 3ege_A Putative methyltransfer 99.7 8.1E-16 2.8E-20 138.0 15.7 152 189-353 23-178 (261)
46 3f4k_A Putative methyltransfer 99.7 2.3E-16 7.8E-21 141.0 11.7 153 189-354 34-197 (257)
47 3l8d_A Methyltransferase; stru 99.7 9.5E-16 3.3E-20 135.6 15.2 142 200-353 52-200 (242)
48 3kkz_A Uncharacterized protein 99.7 1.8E-16 6.3E-21 142.6 10.6 151 191-354 36-197 (267)
49 2qe6_A Uncharacterized protein 99.7 1E-15 3.6E-20 138.2 14.7 140 201-349 77-238 (274)
50 2qm3_A Predicted methyltransfe 99.7 2.3E-15 7.9E-20 142.0 17.3 215 44-300 47-279 (373)
51 3g2m_A PCZA361.24; SAM-depende 99.7 2.2E-16 7.4E-21 144.6 10.0 174 187-364 70-291 (299)
52 2p7i_A Hypothetical protein; p 99.7 3.4E-16 1.2E-20 138.8 10.7 144 200-352 41-198 (250)
53 3gu3_A Methyltransferase; alph 99.7 5.2E-16 1.8E-20 141.0 11.7 161 191-353 12-190 (284)
54 2ex4_A Adrenal gland protein A 99.6 1.8E-16 6.2E-21 140.5 8.3 138 201-354 79-226 (241)
55 3lcc_A Putative methyl chlorid 99.6 5.7E-16 1.9E-20 136.7 10.7 132 202-354 67-208 (235)
56 3bkw_A MLL3908 protein, S-aden 99.6 1.5E-15 5E-20 134.4 13.2 160 190-353 33-214 (243)
57 4fsd_A Arsenic methyltransfera 99.6 1E-15 3.6E-20 145.0 12.6 144 200-352 82-250 (383)
58 3bkx_A SAM-dependent methyltra 99.6 2.1E-15 7.3E-20 136.1 13.4 161 190-353 33-219 (275)
59 3cgg_A SAM-dependent methyltra 99.6 3.1E-15 1E-19 127.4 13.7 143 191-364 38-194 (195)
60 3jwh_A HEN1; methyltransferase 99.6 1.8E-15 6.2E-20 131.7 11.8 143 199-349 27-188 (217)
61 3sm3_A SAM-dependent methyltra 99.6 3.4E-15 1.2E-19 131.2 13.1 148 200-352 29-206 (235)
62 3d2l_A SAM-dependent methyltra 99.6 4.7E-15 1.6E-19 131.1 13.6 162 201-365 33-243 (243)
63 3ccf_A Cyclopropane-fatty-acyl 99.6 2E-15 6.8E-20 136.8 11.3 153 191-353 48-210 (279)
64 4htf_A S-adenosylmethionine-de 99.6 1.3E-15 4.5E-20 138.4 10.1 156 190-354 59-233 (285)
65 2xvm_A Tellurite resistance pr 99.6 2.7E-15 9.1E-20 128.5 11.4 142 191-353 23-173 (199)
66 1y8c_A S-adenosylmethionine-de 99.6 2.5E-15 8.4E-20 133.1 11.3 163 201-365 37-245 (246)
67 1vlm_A SAM-dependent methyltra 99.6 6.1E-15 2.1E-19 128.7 13.6 137 202-353 48-188 (219)
68 2p35_A Trans-aconitate 2-methy 99.6 1.4E-15 4.7E-20 136.0 9.7 151 190-347 23-184 (259)
69 3g5l_A Putative S-adenosylmeth 99.6 1.1E-15 3.9E-20 136.2 7.8 159 190-353 34-216 (253)
70 2zfu_A Nucleomethylin, cerebra 99.6 8.7E-15 3E-19 127.2 13.1 133 190-365 56-191 (215)
71 2yqz_A Hypothetical protein TT 99.6 5.4E-15 1.9E-19 132.3 11.7 146 199-351 37-194 (263)
72 3g07_A 7SK snRNA methylphospha 99.6 9.3E-16 3.2E-20 140.0 6.7 145 201-353 46-269 (292)
73 3e8s_A Putative SAM dependent 99.6 1.9E-15 6.6E-20 132.0 8.3 153 191-352 43-208 (227)
74 3ggd_A SAM-dependent methyltra 99.6 3.6E-15 1.2E-19 132.3 8.4 147 199-352 54-218 (245)
75 4hg2_A Methyltransferase type 99.6 7.5E-15 2.6E-19 131.2 10.4 96 201-301 39-138 (257)
76 3cc8_A Putative methyltransfer 99.6 5.8E-15 2E-19 129.2 9.1 151 190-353 23-185 (230)
77 2p8j_A S-adenosylmethionine-de 99.6 2.3E-15 8E-20 130.0 6.3 151 199-350 21-180 (209)
78 2gb4_A Thiopurine S-methyltran 99.5 2.3E-14 8E-19 127.7 10.7 132 200-352 67-226 (252)
79 3g5t_A Trans-aconitate 3-methy 99.5 2.6E-14 8.9E-19 130.7 10.6 163 176-346 13-197 (299)
80 3thr_A Glycine N-methyltransfe 99.5 6.3E-15 2.1E-19 134.3 5.1 105 192-299 49-176 (293)
81 2i62_A Nicotinamide N-methyltr 99.5 1.6E-14 5.4E-19 129.4 7.6 152 200-366 55-262 (265)
82 2aot_A HMT, histamine N-methyl 99.5 2.8E-14 9.7E-19 130.1 9.2 141 201-350 52-218 (292)
83 1wzn_A SAM-dependent methyltra 99.5 4.4E-13 1.5E-17 119.2 16.5 172 190-365 31-250 (252)
84 3m70_A Tellurite resistance pr 99.5 7.8E-14 2.7E-18 126.6 11.6 132 200-351 119-258 (286)
85 2a14_A Indolethylamine N-methy 99.5 1.6E-14 5.3E-19 129.8 6.3 151 200-365 54-260 (263)
86 3giw_A Protein of unknown func 99.5 1.6E-13 5.6E-18 122.1 12.4 152 190-349 67-243 (277)
87 4e2x_A TCAB9; kijanose, tetron 99.5 6.6E-14 2.3E-18 134.1 10.0 151 188-354 95-254 (416)
88 1ri5_A MRNA capping enzyme; me 99.5 3.2E-14 1.1E-18 129.7 7.1 154 199-353 62-250 (298)
89 3q87_B N6 adenine specific DNA 99.5 5.3E-13 1.8E-17 111.7 13.6 118 201-354 23-150 (170)
90 1fbn_A MJ fibrillarin homologu 99.5 5.3E-13 1.8E-17 117.3 13.5 142 199-365 72-228 (230)
91 2kw5_A SLR1183 protein; struct 99.5 1.9E-13 6.4E-18 117.4 10.3 140 190-352 22-170 (202)
92 3grz_A L11 mtase, ribosomal pr 99.5 1.7E-13 5.7E-18 118.1 9.1 130 200-364 59-196 (205)
93 3ofk_A Nodulation protein S; N 99.4 2.9E-14 9.9E-19 123.9 4.0 99 199-299 49-155 (216)
94 2g72_A Phenylethanolamine N-me 99.4 4.8E-14 1.6E-18 128.3 5.3 137 201-352 71-255 (289)
95 3e05_A Precorrin-6Y C5,15-meth 99.4 1.1E-12 3.7E-17 113.0 13.3 122 190-346 30-161 (204)
96 3mq2_A 16S rRNA methyltransfer 99.4 2.6E-13 8.9E-18 118.1 9.5 142 199-353 25-184 (218)
97 1dus_A MJ0882; hypothetical pr 99.4 6.8E-13 2.3E-17 112.7 11.3 142 189-364 41-193 (194)
98 3uwp_A Histone-lysine N-methyl 99.4 3.6E-13 1.2E-17 125.8 10.2 113 189-305 162-295 (438)
99 4dzr_A Protein-(glutamine-N5) 99.4 1.1E-13 3.9E-18 119.6 6.5 148 189-365 18-205 (215)
100 2gs9_A Hypothetical protein TT 99.4 3.7E-13 1.3E-17 116.4 9.6 137 192-344 29-171 (211)
101 3p2e_A 16S rRNA methylase; met 99.4 8.9E-13 3E-17 115.4 12.0 146 200-354 23-186 (225)
102 2b3t_A Protein methyltransfera 99.4 1.6E-12 5.5E-17 117.4 12.7 144 189-364 99-275 (276)
103 3hm2_A Precorrin-6Y C5,15-meth 99.4 1.2E-12 4E-17 109.9 9.7 101 191-299 16-128 (178)
104 3orh_A Guanidinoacetate N-meth 99.4 8.3E-14 2.8E-18 123.0 2.4 107 188-299 49-171 (236)
105 3iv6_A Putative Zn-dependent a 99.4 1.3E-12 4.4E-17 116.4 9.0 107 189-299 34-149 (261)
106 3htx_A HEN1; HEN1, small RNA m 99.4 3.3E-12 1.1E-16 127.9 12.8 106 192-299 713-835 (950)
107 1af7_A Chemotaxis receptor met 99.3 9.3E-13 3.2E-17 118.3 6.7 97 201-297 105-251 (274)
108 1yb2_A Hypothetical protein TA 99.3 1.3E-12 4.5E-17 118.0 7.7 125 191-352 101-236 (275)
109 3bgv_A MRNA CAP guanine-N7 met 99.3 3.6E-12 1.2E-16 117.2 10.5 98 201-299 34-156 (313)
110 2vdw_A Vaccinia virus capping 99.3 1.5E-12 5.2E-17 119.0 7.9 98 201-299 48-170 (302)
111 3mti_A RRNA methylase; SAM-dep 99.3 3.3E-12 1.1E-16 108.1 9.1 144 199-365 20-184 (185)
112 1yzh_A TRNA (guanine-N(7)-)-me 99.3 6.4E-12 2.2E-16 109.0 11.1 98 201-298 41-156 (214)
113 1nt2_A Fibrillarin-like PRE-rR 99.3 1.4E-11 4.7E-16 106.7 12.9 137 199-364 55-209 (210)
114 1zx0_A Guanidinoacetate N-meth 99.3 1.5E-12 5.1E-17 114.8 6.3 100 200-300 59-172 (236)
115 4df3_A Fibrillarin-like rRNA/T 99.3 3.5E-12 1.2E-16 111.3 8.5 133 199-355 75-219 (233)
116 2pxx_A Uncharacterized protein 99.3 3E-12 1E-16 110.6 7.7 100 200-300 41-161 (215)
117 1g8a_A Fibrillarin-like PRE-rR 99.3 1.6E-11 5.6E-16 107.3 12.3 142 199-365 71-227 (227)
118 2nxc_A L11 mtase, ribosomal pr 99.3 3.7E-12 1.3E-16 113.6 8.1 124 200-359 119-250 (254)
119 3mb5_A SAM-dependent methyltra 99.3 4.5E-12 1.5E-16 112.9 8.6 127 189-352 82-221 (255)
120 3njr_A Precorrin-6Y methylase; 99.3 1.8E-11 6.2E-16 105.4 12.1 121 191-350 46-177 (204)
121 3evz_A Methyltransferase; NYSG 99.3 1.1E-11 3.6E-16 108.7 10.8 137 199-364 53-219 (230)
122 2fca_A TRNA (guanine-N(7)-)-me 99.3 7.5E-12 2.6E-16 108.6 9.1 98 201-298 38-153 (213)
123 3fzg_A 16S rRNA methylase; met 99.3 3.3E-12 1.1E-16 106.8 6.2 138 200-359 48-193 (200)
124 2ipx_A RRNA 2'-O-methyltransfe 99.3 8.1E-12 2.8E-16 109.8 8.8 143 199-365 75-232 (233)
125 3eey_A Putative rRNA methylase 99.3 6.3E-12 2.1E-16 107.4 7.6 102 199-300 20-141 (197)
126 3m33_A Uncharacterized protein 99.3 2.6E-12 9E-17 112.5 5.2 113 200-352 47-166 (226)
127 1xdz_A Methyltransferase GIDB; 99.3 5E-12 1.7E-16 111.7 6.9 133 200-365 69-219 (240)
128 3bwc_A Spermidine synthase; SA 99.3 1.1E-11 3.8E-16 113.5 9.3 129 200-353 94-240 (304)
129 2pwy_A TRNA (adenine-N(1)-)-me 99.3 9.9E-12 3.4E-16 110.7 8.7 126 190-352 86-223 (258)
130 1l3i_A Precorrin-6Y methyltran 99.3 7.1E-12 2.4E-16 106.1 7.3 120 191-347 24-154 (192)
131 3id6_C Fibrillarin-like rRNA/T 99.2 8.2E-11 2.8E-15 102.9 13.6 143 199-365 74-231 (232)
132 3lpm_A Putative methyltransfer 99.2 4.6E-11 1.6E-15 106.7 11.8 136 199-365 46-219 (259)
133 3fpf_A Mtnas, putative unchara 99.2 1.3E-11 4.3E-16 111.2 8.1 95 199-298 120-222 (298)
134 2avn_A Ubiquinone/menaquinone 99.2 1.9E-11 6.4E-16 109.3 8.7 97 201-300 54-154 (260)
135 3dxy_A TRNA (guanine-N(7)-)-me 99.2 6.6E-12 2.3E-16 109.3 5.3 98 201-298 34-150 (218)
136 4dcm_A Ribosomal RNA large sub 99.2 1.8E-11 6E-16 115.3 8.5 107 191-298 213-334 (375)
137 2ld4_A Anamorsin; methyltransf 99.2 1.5E-11 5E-16 103.2 7.1 109 199-345 10-128 (176)
138 2h00_A Methyltransferase 10 do 99.2 1.4E-12 4.6E-17 116.3 0.6 144 201-353 65-238 (254)
139 2plw_A Ribosomal RNA methyltra 99.2 7.7E-11 2.6E-15 100.9 11.2 106 189-298 10-154 (201)
140 1jsx_A Glucose-inhibited divis 99.2 1.4E-11 4.7E-16 106.1 6.4 90 202-297 66-164 (207)
141 2yxd_A Probable cobalt-precorr 99.2 3.7E-11 1.3E-15 100.9 8.7 121 190-350 25-154 (183)
142 3hp7_A Hemolysin, putative; st 99.2 9.8E-11 3.3E-15 105.5 11.8 149 189-353 73-232 (291)
143 2pjd_A Ribosomal RNA small sub 99.2 1E-11 3.5E-16 115.8 5.5 109 190-299 186-304 (343)
144 1u2z_A Histone-lysine N-methyl 99.2 6.7E-11 2.3E-15 112.5 11.2 112 189-304 231-365 (433)
145 3kr9_A SAM-dependent methyltra 99.2 1.4E-10 4.8E-15 100.6 12.2 130 200-364 14-157 (225)
146 3g89_A Ribosomal RNA small sub 99.2 1.2E-11 4.2E-16 109.8 5.6 132 200-364 79-228 (249)
147 3lec_A NADB-rossmann superfami 99.2 1.4E-10 4.8E-15 100.9 11.5 130 200-364 20-163 (230)
148 2y1w_A Histone-arginine methyl 99.2 1.8E-11 6.2E-16 114.2 5.9 105 191-297 41-154 (348)
149 1ej0_A FTSJ; methyltransferase 99.2 8.3E-11 2.8E-15 98.0 9.3 106 190-299 11-137 (180)
150 3ckk_A TRNA (guanine-N(7)-)-me 99.2 5.1E-11 1.7E-15 104.9 8.4 99 200-298 45-168 (235)
151 3opn_A Putative hemolysin; str 99.2 3.5E-11 1.2E-15 105.6 7.3 148 189-353 25-184 (232)
152 1o9g_A RRNA methyltransferase; 99.2 6.6E-11 2.3E-15 105.1 9.0 108 191-299 42-215 (250)
153 1o54_A SAM-dependent O-methylt 99.2 5.6E-11 1.9E-15 107.3 8.3 127 189-352 101-238 (277)
154 3tfw_A Putative O-methyltransf 99.1 9.5E-11 3.2E-15 104.0 9.3 98 199-301 61-173 (248)
155 1jg1_A PIMT;, protein-L-isoasp 99.1 4.9E-11 1.7E-15 105.0 6.9 102 188-299 79-190 (235)
156 3duw_A OMT, O-methyltransferas 99.1 6.2E-11 2.1E-15 103.3 7.5 98 200-302 57-171 (223)
157 3p9n_A Possible methyltransfer 99.1 1.5E-10 5.1E-15 98.2 9.3 100 200-301 43-156 (189)
158 3b3j_A Histone-arginine methyl 99.1 4.5E-11 1.5E-15 115.9 6.3 106 189-296 147-261 (480)
159 3lbf_A Protein-L-isoaspartate 99.1 8E-11 2.7E-15 101.6 7.2 100 190-300 67-176 (210)
160 3gnl_A Uncharacterized protein 99.1 3.5E-10 1.2E-14 99.2 11.1 131 200-365 20-164 (244)
161 2yxe_A Protein-L-isoaspartate 99.1 9.1E-11 3.1E-15 101.6 7.2 101 190-299 67-178 (215)
162 2ozv_A Hypothetical protein AT 99.1 2.2E-10 7.7E-15 102.4 10.0 99 199-297 34-169 (260)
163 2fyt_A Protein arginine N-meth 99.1 1.6E-10 5.5E-15 107.4 9.3 103 191-295 55-168 (340)
164 3r3h_A O-methyltransferase, SA 99.1 7.7E-11 2.6E-15 104.2 6.7 98 201-303 60-175 (242)
165 2frn_A Hypothetical protein PH 99.1 2E-10 6.7E-15 103.8 9.4 120 200-349 124-253 (278)
166 2bm8_A Cephalosporin hydroxyla 99.1 2.8E-10 9.7E-15 100.2 8.6 93 202-299 82-188 (236)
167 3u81_A Catechol O-methyltransf 99.1 1.3E-10 4.4E-15 101.3 6.3 98 200-300 57-172 (221)
168 3ntv_A MW1564 protein; rossman 99.0 1.1E-10 3.6E-15 102.6 5.0 97 200-301 70-179 (232)
169 3sso_A Methyltransferase; macr 99.0 1.6E-10 5.4E-15 107.8 6.3 104 189-300 206-326 (419)
170 2vdv_E TRNA (guanine-N(7)-)-me 99.0 1.4E-10 4.7E-15 102.8 5.6 94 200-298 48-173 (246)
171 3r0q_C Probable protein argini 99.0 2E-10 6.7E-15 108.3 6.9 100 199-299 61-170 (376)
172 1p91_A Ribosomal RNA large sub 99.0 2.1E-10 7.1E-15 102.9 6.8 93 200-301 84-181 (269)
173 3lcv_B Sisomicin-gentamicin re 99.0 9.4E-11 3.2E-15 102.6 4.2 136 200-356 131-274 (281)
174 3q7e_A Protein arginine N-meth 99.0 1.5E-10 5.2E-15 107.9 6.0 96 200-296 65-171 (349)
175 3adn_A Spermidine synthase; am 99.0 2.6E-10 9E-15 103.6 7.3 99 200-298 82-198 (294)
176 1vbf_A 231AA long hypothetical 99.0 2.3E-10 7.8E-15 100.2 6.7 101 189-300 59-167 (231)
177 3dou_A Ribosomal RNA large sub 99.0 7.3E-10 2.5E-14 94.3 9.6 106 188-299 12-140 (191)
178 1dl5_A Protein-L-isoaspartate 99.0 2.5E-10 8.6E-15 105.1 7.1 102 189-299 64-176 (317)
179 3gjy_A Spermidine synthase; AP 99.0 1.5E-10 5E-15 105.6 5.4 98 202-299 90-201 (317)
180 3dmg_A Probable ribosomal RNA 99.0 2.9E-10 9.9E-15 107.1 7.5 96 201-298 233-340 (381)
181 3dr5_A Putative O-methyltransf 99.0 4.9E-10 1.7E-14 97.6 8.4 95 202-301 57-166 (221)
182 2esr_A Methyltransferase; stru 99.0 2E-10 6.7E-15 96.3 5.1 107 191-301 21-141 (177)
183 2gpy_A O-methyltransferase; st 99.0 2E-10 6.9E-15 100.8 5.3 97 200-301 53-163 (233)
184 3tr6_A O-methyltransferase; ce 99.0 2.5E-10 8.7E-15 99.5 5.6 97 201-302 64-178 (225)
185 2b25_A Hypothetical protein; s 99.0 2.2E-10 7.5E-15 106.4 5.4 102 190-299 95-220 (336)
186 2nyu_A Putative ribosomal RNA 99.0 1.6E-09 5.5E-14 92.1 10.3 105 191-299 12-146 (196)
187 2hnk_A SAM-dependent O-methylt 99.0 5.3E-10 1.8E-14 98.5 7.4 97 200-301 59-184 (239)
188 1nv8_A HEMK protein; class I a 99.0 6.9E-10 2.4E-14 100.5 8.3 94 201-296 123-247 (284)
189 3bzb_A Uncharacterized protein 99.0 2.2E-09 7.6E-14 97.0 11.4 96 199-297 77-204 (281)
190 3frh_A 16S rRNA methylase; met 99.0 1.6E-09 5.5E-14 93.9 9.7 96 199-298 103-206 (253)
191 1i9g_A Hypothetical protein RV 99.0 1.2E-09 4E-14 98.5 9.4 103 189-299 88-204 (280)
192 1g6q_1 HnRNP arginine N-methyl 99.0 5.5E-10 1.9E-14 103.3 6.7 96 200-296 37-143 (328)
193 2oxt_A Nucleoside-2'-O-methylt 99.0 1.3E-09 4.4E-14 97.5 8.7 107 189-300 63-187 (265)
194 2fhp_A Methylase, putative; al 99.0 3.3E-10 1.1E-14 95.6 4.4 106 191-300 34-156 (187)
195 3c3p_A Methyltransferase; NP_9 98.9 3.4E-10 1.2E-14 97.6 4.0 97 201-302 56-164 (210)
196 3tma_A Methyltransferase; thum 98.9 1.6E-09 5.5E-14 101.3 8.9 110 188-298 191-317 (354)
197 2p41_A Type II methyltransfera 98.9 2.3E-09 7.9E-14 97.8 9.5 103 191-297 73-190 (305)
198 2wa2_A Non-structural protein 98.9 1.4E-09 4.8E-14 97.8 7.8 106 189-299 71-194 (276)
199 1sui_A Caffeoyl-COA O-methyltr 98.9 7.9E-10 2.7E-14 98.0 5.7 97 200-301 78-193 (247)
200 1ixk_A Methyltransferase; open 98.9 2.7E-09 9.3E-14 98.0 9.5 102 199-300 116-248 (315)
201 1r18_A Protein-L-isoaspartate( 98.9 9.2E-10 3.2E-14 96.2 5.7 93 199-299 82-195 (227)
202 1ws6_A Methyltransferase; stru 98.9 3.7E-10 1.3E-14 93.7 2.8 95 201-301 41-150 (171)
203 2ift_A Putative methylase HI07 98.9 3.7E-10 1.3E-14 96.9 2.4 96 201-300 53-165 (201)
204 2yvl_A TRMI protein, hypotheti 98.9 5.8E-09 2E-13 92.1 9.9 100 190-299 81-191 (248)
205 2i7c_A Spermidine synthase; tr 98.9 8.1E-10 2.8E-14 100.0 4.2 99 200-298 77-192 (283)
206 2pbf_A Protein-L-isoaspartate 98.9 2E-09 6.8E-14 93.9 6.4 93 199-299 78-194 (227)
207 3gdh_A Trimethylguanosine synt 98.9 6.1E-11 2.1E-15 104.6 -3.6 141 201-362 78-228 (241)
208 2o07_A Spermidine synthase; st 98.9 1E-09 3.4E-14 100.3 4.3 99 200-298 94-209 (304)
209 1xj5_A Spermidine synthase 1; 98.9 9.2E-10 3.1E-14 101.7 4.0 98 200-297 119-234 (334)
210 1uir_A Polyamine aminopropyltr 98.9 9.8E-10 3.3E-14 100.9 4.1 99 200-298 76-195 (314)
211 1iy9_A Spermidine synthase; ro 98.9 9.9E-10 3.4E-14 98.9 3.7 98 201-298 75-189 (275)
212 1i1n_A Protein-L-isoaspartate 98.9 4.2E-09 1.4E-13 91.8 7.6 93 199-299 75-183 (226)
213 1mjf_A Spermidine synthase; sp 98.9 1.8E-09 6.2E-14 97.6 5.4 98 200-298 74-193 (281)
214 2pt6_A Spermidine synthase; tr 98.8 1.3E-09 4.3E-14 100.4 3.9 99 200-298 115-230 (321)
215 2avd_A Catechol-O-methyltransf 98.8 1.1E-09 3.8E-14 95.6 3.3 97 200-301 68-182 (229)
216 2b2c_A Spermidine synthase; be 98.8 1.1E-09 3.8E-14 100.3 3.4 99 200-298 107-222 (314)
217 2fpo_A Methylase YHHF; structu 98.8 1.5E-09 5.3E-14 93.1 4.1 96 201-300 54-162 (202)
218 3c3y_A Pfomt, O-methyltransfer 98.8 1.9E-09 6.7E-14 94.8 4.7 97 200-301 69-184 (237)
219 4hc4_A Protein arginine N-meth 98.8 3.3E-09 1.1E-13 99.1 5.7 95 201-296 83-187 (376)
220 3cbg_A O-methyltransferase; cy 98.8 1.3E-09 4.5E-14 95.6 2.7 96 201-301 72-185 (232)
221 1ne2_A Hypothetical protein TA 98.8 5.7E-09 2E-13 89.1 6.6 88 199-288 49-139 (200)
222 1inl_A Spermidine synthase; be 98.8 2.7E-09 9.4E-14 97.1 4.6 97 201-297 90-204 (296)
223 3a27_A TYW2, uncharacterized p 98.8 2.1E-09 7.3E-14 96.6 3.6 97 199-301 117-222 (272)
224 1zq9_A Probable dimethyladenos 98.8 8.1E-09 2.8E-13 93.4 7.4 102 189-294 17-143 (285)
225 2cmg_A Spermidine synthase; tr 98.8 9.1E-09 3.1E-13 91.8 6.7 89 200-297 71-170 (262)
226 2xyq_A Putative 2'-O-methyl tr 98.8 1.7E-08 5.7E-13 91.1 8.3 116 199-351 61-195 (290)
227 4azs_A Methyltransferase WBDD; 98.7 2E-09 6.7E-14 106.9 2.0 102 200-303 65-178 (569)
228 3tm4_A TRNA (guanine N2-)-meth 98.7 3.4E-08 1.2E-12 92.8 10.2 122 199-354 215-353 (373)
229 1wy7_A Hypothetical protein PH 98.7 6E-08 2.1E-12 83.1 10.9 88 200-288 48-141 (207)
230 2yxl_A PH0851 protein, 450AA l 98.7 2.7E-08 9.4E-13 95.8 9.3 103 199-301 257-392 (450)
231 1qam_A ERMC' methyltransferase 98.7 1.9E-08 6.6E-13 88.8 7.2 103 189-294 19-142 (244)
232 2ih2_A Modification methylase 98.7 3.4E-08 1.2E-12 94.2 9.3 106 190-299 29-165 (421)
233 2f8l_A Hypothetical protein LM 98.7 1.3E-08 4.3E-13 94.8 5.7 100 200-299 129-257 (344)
234 1yub_A Ermam, rRNA methyltrans 98.7 5.5E-09 1.9E-13 92.4 2.5 108 189-299 18-146 (245)
235 2h1r_A Dimethyladenosine trans 98.7 2.5E-08 8.5E-13 90.9 6.9 100 189-292 31-153 (299)
236 3ajd_A Putative methyltransfer 98.7 1E-08 3.5E-13 92.3 4.2 103 199-301 81-214 (274)
237 2igt_A SAM dependent methyltra 98.6 6.4E-08 2.2E-12 89.4 9.0 95 201-299 153-273 (332)
238 3b5i_A S-adenosyl-L-methionine 98.6 7.8E-07 2.7E-11 82.9 16.0 163 188-351 35-296 (374)
239 3k6r_A Putative transferase PH 98.6 6.9E-08 2.4E-12 86.5 7.2 120 199-348 123-252 (278)
240 1sqg_A SUN protein, FMU protei 98.6 5.9E-08 2E-12 92.9 6.9 103 199-301 244-377 (429)
241 2frx_A Hypothetical protein YE 98.5 3.2E-07 1.1E-11 88.8 9.4 101 201-301 117-249 (479)
242 3m6w_A RRNA methylase; rRNA me 98.5 6.8E-08 2.3E-12 92.7 4.5 101 199-300 99-231 (464)
243 1m6e_X S-adenosyl-L-methionnin 98.5 1.9E-06 6.4E-11 79.8 13.4 151 200-350 50-277 (359)
244 2efj_A 3,7-dimethylxanthine me 98.4 3.6E-06 1.2E-10 78.5 13.0 150 202-351 53-290 (384)
245 3ftd_A Dimethyladenosine trans 98.4 1.1E-06 3.6E-11 77.8 9.0 85 189-275 20-110 (249)
246 3m4x_A NOL1/NOP2/SUN family pr 98.4 2.9E-07 1E-11 88.2 5.7 103 199-301 103-237 (456)
247 3k0b_A Predicted N6-adenine-sp 98.4 5.7E-07 1.9E-11 84.8 7.5 111 188-299 189-351 (393)
248 2okc_A Type I restriction enzy 98.4 2E-07 6.8E-12 89.7 4.3 110 189-299 160-308 (445)
249 1wxx_A TT1595, hypothetical pr 98.4 1.6E-07 5.4E-12 88.6 3.4 97 201-299 209-326 (382)
250 3ldg_A Putative uncharacterize 98.3 1.6E-06 5.6E-11 81.4 9.7 111 188-299 182-344 (384)
251 2as0_A Hypothetical protein PH 98.3 2E-07 6.7E-12 88.4 3.5 98 201-299 217-336 (396)
252 1rjd_A PPM1P, carboxy methyl t 98.3 1.7E-06 5.9E-11 79.6 9.7 143 201-346 97-281 (334)
253 3gru_A Dimethyladenosine trans 98.3 9.5E-07 3.3E-11 79.9 7.8 79 189-270 39-125 (295)
254 2yx1_A Hypothetical protein MJ 98.3 2.8E-07 9.7E-12 85.3 3.9 92 200-300 194-293 (336)
255 3ldu_A Putative methylase; str 98.3 1.2E-06 4E-11 82.5 7.5 111 188-299 183-345 (385)
256 4dmg_A Putative uncharacterize 98.3 6.2E-07 2.1E-11 84.6 5.6 97 201-299 214-327 (393)
257 3fut_A Dimethyladenosine trans 98.3 1.6E-06 5.5E-11 77.4 7.9 90 189-283 36-133 (271)
258 4gqb_A Protein arginine N-meth 98.3 5.2E-07 1.8E-11 89.3 4.8 125 164-295 324-464 (637)
259 3evf_A RNA-directed RNA polyme 98.3 2.9E-06 9.8E-11 74.8 8.9 109 187-296 61-182 (277)
260 2b78_A Hypothetical protein SM 98.2 3.2E-07 1.1E-11 86.5 2.6 99 200-299 211-332 (385)
261 2qfm_A Spermine synthase; sper 98.2 6.8E-07 2.3E-11 82.5 4.6 98 200-298 187-314 (364)
262 3c0k_A UPF0064 protein YCCW; P 98.2 6.5E-07 2.2E-11 84.8 4.0 98 201-299 220-340 (396)
263 1qyr_A KSGA, high level kasuga 98.2 2.2E-06 7.6E-11 75.8 6.5 90 189-281 10-111 (252)
264 3uzu_A Ribosomal RNA small sub 98.2 7E-07 2.4E-11 80.2 3.2 84 189-273 31-127 (279)
265 3v97_A Ribosomal RNA large sub 98.2 1.1E-06 3.8E-11 88.9 4.7 98 201-299 539-658 (703)
266 1uwv_A 23S rRNA (uracil-5-)-me 98.1 4E-06 1.4E-10 80.3 8.1 99 190-297 276-388 (433)
267 2jjq_A Uncharacterized RNA met 98.1 6.2E-06 2.1E-10 78.5 9.2 91 200-298 289-387 (425)
268 3ua3_A Protein arginine N-meth 98.1 2.2E-06 7.5E-11 84.9 6.0 125 164-295 379-531 (745)
269 3o4f_A Spermidine synthase; am 98.1 2.4E-06 8.3E-11 76.6 5.5 99 200-298 82-198 (294)
270 3tqs_A Ribosomal RNA small sub 98.1 2.5E-06 8.4E-11 75.6 5.3 83 189-274 18-110 (255)
271 2qy6_A UPF0209 protein YFCK; s 98.1 4.3E-06 1.5E-10 74.0 5.9 131 201-364 60-246 (257)
272 3gcz_A Polyprotein; flavivirus 97.9 1E-05 3.5E-10 71.4 6.1 112 185-298 75-201 (282)
273 3iei_A Leucine carboxyl methyl 97.9 0.0002 6.9E-09 65.6 14.3 145 201-353 90-281 (334)
274 1m6y_A S-adenosyl-methyltransf 97.8 1.1E-05 3.9E-10 73.0 4.7 78 189-267 15-106 (301)
275 3bt7_A TRNA (uracil-5-)-methyl 97.8 5.2E-06 1.8E-10 77.8 2.1 87 202-298 214-326 (369)
276 3v97_A Ribosomal RNA large sub 97.8 3.9E-05 1.3E-09 77.7 8.1 111 188-299 178-348 (703)
277 2dul_A N(2),N(2)-dimethylguano 97.8 2.5E-05 8.5E-10 73.2 5.6 91 202-298 48-164 (378)
278 2b9e_A NOL1/NOP2/SUN domain fa 97.7 5.9E-05 2E-09 68.6 7.5 100 199-299 100-235 (309)
279 2ar0_A M.ecoki, type I restric 97.7 2.2E-05 7.5E-10 77.1 4.8 109 190-299 159-313 (541)
280 2r6z_A UPF0341 protein in RSP 97.7 3.8E-05 1.3E-09 68.1 5.7 98 199-300 81-218 (258)
281 4auk_A Ribosomal RNA large sub 97.7 0.00016 5.5E-09 66.7 9.2 96 199-299 209-307 (375)
282 3eld_A Methyltransferase; flav 97.6 0.00025 8.6E-09 62.9 9.5 112 185-298 66-191 (300)
283 3axs_A Probable N(2),N(2)-dime 97.5 3.2E-05 1.1E-09 72.6 2.9 92 201-298 52-158 (392)
284 2uyo_A Hypothetical protein ML 97.5 0.00029 1E-08 64.0 9.1 144 201-348 102-274 (310)
285 3s1s_A Restriction endonucleas 97.4 0.00035 1.2E-08 70.5 9.0 100 200-299 320-466 (878)
286 2px2_A Genome polyprotein [con 97.4 0.00058 2E-08 59.3 9.1 111 185-299 58-184 (269)
287 3p8z_A Mtase, non-structural p 97.4 0.00094 3.2E-08 57.1 9.7 108 187-296 65-184 (267)
288 3khk_A Type I restriction-modi 97.3 7.7E-05 2.6E-09 73.2 3.0 109 188-298 233-395 (544)
289 2oyr_A UPF0341 protein YHIQ; a 97.3 7.7E-05 2.6E-09 65.9 2.1 77 192-271 78-176 (258)
290 3c6k_A Spermine synthase; sper 97.2 0.00022 7.4E-09 66.0 4.4 96 201-297 205-330 (381)
291 3lkz_A Non-structural protein 97.2 0.0018 6.1E-08 57.3 9.4 108 187-296 81-202 (321)
292 2k4m_A TR8_protein, UPF0146 pr 97.2 0.00048 1.6E-08 54.6 5.2 84 201-301 35-124 (153)
293 2vz8_A Fatty acid synthase; tr 97.2 0.00014 4.8E-09 83.1 2.9 142 201-352 1240-1394(2512)
294 3cvo_A Methyltransferase-like 97.1 0.0014 4.9E-08 55.3 8.0 90 201-300 30-156 (202)
295 3lkd_A Type I restriction-modi 97.0 0.0015 5.1E-08 64.0 8.0 99 201-299 221-359 (542)
296 2wk1_A NOVP; transferase, O-me 96.9 0.0023 7.7E-08 57.2 8.0 96 200-299 105-245 (282)
297 2zwa_A Leucine carboxyl methyl 96.9 0.008 2.7E-07 60.8 12.7 148 201-352 107-308 (695)
298 3b73_A PHIH1 repressor-like pr 96.8 0.00096 3.3E-08 50.7 3.8 64 41-119 14-79 (111)
299 3ll7_A Putative methyltransfer 96.7 0.00046 1.6E-08 65.0 2.0 64 201-266 93-170 (410)
300 1wg8_A Predicted S-adenosylmet 96.7 0.0019 6.5E-08 57.2 5.2 65 188-255 10-77 (285)
301 3pqk_A Biofilm growth-associat 96.6 0.0016 5.4E-08 48.6 3.6 65 34-111 17-81 (102)
302 1y0u_A Arsenical resistance op 96.5 0.0013 4.6E-08 48.5 2.8 63 34-114 25-87 (96)
303 1xmk_A Double-stranded RNA-spe 96.5 0.0013 4.4E-08 46.5 2.5 61 41-114 12-73 (79)
304 2heo_A Z-DNA binding protein 1 96.5 0.0011 3.7E-08 45.5 2.0 55 42-110 12-66 (67)
305 3jth_A Transcription activator 96.4 0.0012 4.2E-08 48.8 1.9 64 35-111 18-81 (98)
306 3f6o_A Probable transcriptiona 96.3 0.0014 4.8E-08 50.4 2.0 67 34-113 12-78 (118)
307 1qbj_A Protein (double-strande 96.2 0.0032 1.1E-07 44.8 3.1 67 40-116 10-76 (81)
308 3vyw_A MNMC2; tRNA wobble urid 96.2 0.011 3.9E-07 53.0 7.4 132 201-365 96-260 (308)
309 1u2w_A CADC repressor, cadmium 96.1 0.0026 9E-08 49.2 2.7 67 33-111 35-101 (122)
310 3f6v_A Possible transcriptiona 95.9 0.0028 9.7E-08 51.0 2.1 70 32-114 50-119 (151)
311 2jsc_A Transcriptional regulat 95.9 0.0029 1E-07 48.6 1.9 66 34-112 15-80 (118)
312 3cuo_A Uncharacterized HTH-typ 95.8 0.0029 9.9E-08 46.6 1.6 65 36-112 20-84 (99)
313 1qgp_A Protein (double strande 95.8 0.0041 1.4E-07 43.8 2.1 61 41-111 15-75 (77)
314 3tka_A Ribosomal RNA small sub 95.7 0.017 5.7E-07 52.4 6.6 67 188-255 45-115 (347)
315 1r1u_A CZRA, repressor protein 95.7 0.0032 1.1E-07 47.3 1.4 49 38-94 24-72 (106)
316 1ub9_A Hypothetical protein PH 95.6 0.005 1.7E-07 45.4 2.3 72 35-115 11-82 (100)
317 2kko_A Possible transcriptiona 95.6 0.0018 6.3E-08 48.9 -0.3 48 39-94 24-71 (108)
318 2oqg_A Possible transcriptiona 95.6 0.0052 1.8E-07 46.6 2.2 65 37-114 18-82 (114)
319 1xn7_A Hypothetical protein YH 95.6 0.01 3.5E-07 41.8 3.5 43 45-94 7-49 (78)
320 2k02_A Ferrous iron transport 95.5 0.0092 3.2E-07 42.9 3.3 43 45-94 7-49 (87)
321 1oyi_A Double-stranded RNA-bin 95.5 0.0083 2.8E-07 42.5 2.8 60 40-113 17-76 (82)
322 3mq0_A Transcriptional repress 95.5 0.0057 1.9E-07 54.5 2.5 59 43-115 33-91 (275)
323 2hzt_A Putative HTH-type trans 95.5 0.012 3.9E-07 44.3 3.8 77 22-117 5-82 (107)
324 2jt1_A PEFI protein; solution 95.4 0.0072 2.5E-07 42.5 2.2 35 56-94 23-57 (77)
325 2fsw_A PG_0823 protein; alpha- 95.3 0.02 6.9E-07 42.9 4.8 84 15-117 9-93 (107)
326 3df8_A Possible HXLR family tr 95.3 0.0098 3.4E-07 45.1 3.0 72 23-117 19-93 (111)
327 1r1t_A Transcriptional repress 95.3 0.0061 2.1E-07 47.1 1.7 50 37-94 43-92 (122)
328 2y75_A HTH-type transcriptiona 95.2 0.021 7.3E-07 44.3 4.8 46 56-111 25-70 (129)
329 4fzv_A Putative methyltransfer 95.1 0.017 5.9E-07 53.3 4.6 103 199-301 146-287 (359)
330 1i4w_A Mitochondrial replicati 95.1 0.027 9.3E-07 51.8 5.7 94 189-283 41-165 (353)
331 3ech_A MEXR, multidrug resista 95.1 0.05 1.7E-06 42.6 6.6 70 39-117 36-105 (142)
332 1r7j_A Conserved hypothetical 95.0 0.014 4.9E-07 42.8 3.0 48 58-118 21-68 (95)
333 2htj_A P fimbrial regulatory p 94.9 0.014 4.9E-07 41.3 2.7 44 43-93 3-46 (81)
334 2xrn_A HTH-type transcriptiona 94.9 0.014 4.7E-07 50.8 3.1 62 43-117 9-70 (241)
335 4a5n_A Uncharacterized HTH-typ 94.8 0.023 7.9E-07 44.4 3.9 80 20-118 15-95 (131)
336 3k0l_A Repressor protein; heli 94.7 0.078 2.7E-06 42.6 7.0 70 40-118 46-115 (162)
337 1yyv_A Putative transcriptiona 94.6 0.022 7.6E-07 44.5 3.4 79 20-117 24-103 (131)
338 1z7u_A Hypothetical protein EF 94.6 0.024 8.3E-07 42.9 3.4 80 19-117 10-90 (112)
339 3t8r_A Staphylococcus aureus C 94.6 0.034 1.2E-06 44.1 4.4 47 56-112 27-73 (143)
340 1mkm_A ICLR transcriptional re 94.5 0.024 8.3E-07 49.5 3.7 58 43-114 11-68 (249)
341 2g7u_A Transcriptional regulat 94.5 0.013 4.3E-07 51.6 1.8 60 43-117 17-76 (257)
342 3ufb_A Type I restriction-modi 94.4 0.11 3.6E-06 50.7 8.4 110 189-299 206-363 (530)
343 3s2w_A Transcriptional regulat 94.4 0.034 1.2E-06 44.6 4.2 66 43-117 53-118 (159)
344 1tbx_A ORF F-93, hypothetical 94.4 0.025 8.6E-07 41.6 3.1 65 42-118 10-78 (99)
345 3deu_A Transcriptional regulat 94.4 0.027 9.1E-07 45.8 3.5 70 40-117 53-122 (166)
346 3kp7_A Transcriptional regulat 94.4 0.11 3.7E-06 41.2 7.1 67 42-117 40-107 (151)
347 2zkz_A Transcriptional repress 94.4 0.012 4.1E-07 43.5 1.2 63 37-112 24-86 (99)
348 3r24_A NSP16, 2'-O-methyl tran 94.3 0.068 2.3E-06 47.3 6.0 92 199-297 107-216 (344)
349 3bdd_A Regulatory protein MARR 94.3 0.046 1.6E-06 42.7 4.6 69 40-117 31-99 (142)
350 3r4k_A Transcriptional regulat 94.2 0.0078 2.7E-07 53.1 -0.1 61 43-116 9-69 (260)
351 3lwf_A LIN1550 protein, putati 94.2 0.051 1.7E-06 43.9 4.8 46 56-111 43-88 (159)
352 2pex_A Transcriptional regulat 94.2 0.049 1.7E-06 43.3 4.6 69 41-118 48-116 (153)
353 2fa5_A Transcriptional regulat 94.1 0.11 3.7E-06 41.6 6.6 68 41-117 50-117 (162)
354 2ia2_A Putative transcriptiona 94.1 0.012 4.2E-07 51.9 0.9 57 43-114 24-80 (265)
355 1on2_A Transcriptional regulat 94.1 0.032 1.1E-06 43.9 3.3 50 56-117 21-70 (142)
356 3cdh_A Transcriptional regulat 94.0 0.12 4.3E-06 40.9 6.8 68 41-117 44-111 (155)
357 2nyx_A Probable transcriptiona 93.9 0.13 4.6E-06 41.5 6.8 69 40-117 45-113 (168)
358 3bja_A Transcriptional regulat 93.8 0.045 1.6E-06 42.5 3.7 69 40-117 33-101 (139)
359 2hr3_A Probable transcriptiona 93.8 0.051 1.8E-06 42.8 4.1 70 39-117 34-104 (147)
360 3nrv_A Putative transcriptiona 93.8 0.034 1.2E-06 43.9 2.9 69 40-117 40-108 (148)
361 2wte_A CSA3; antiviral protein 93.7 0.032 1.1E-06 48.6 2.8 64 41-118 153-216 (244)
362 3g3z_A NMB1585, transcriptiona 93.6 0.04 1.4E-06 43.4 3.0 69 40-117 31-99 (145)
363 3u2r_A Regulatory protein MARR 93.6 0.083 2.8E-06 42.8 5.0 72 40-118 46-117 (168)
364 3e6m_A MARR family transcripti 93.6 0.14 4.9E-06 41.0 6.4 68 41-117 54-121 (161)
365 4g6q_A Putative uncharacterize 93.6 0.016 5.4E-07 48.1 0.6 74 33-114 16-90 (182)
366 3jw4_A Transcriptional regulat 93.5 0.15 5E-06 40.2 6.3 70 41-117 42-111 (148)
367 2zig_A TTHA0409, putative modi 93.5 0.067 2.3E-06 48.0 4.7 51 188-242 224-275 (297)
368 2o0y_A Transcriptional regulat 93.5 0.02 6.9E-07 50.4 1.1 58 43-114 26-83 (260)
369 2f2e_A PA1607; transcription f 93.5 0.044 1.5E-06 43.6 3.0 76 22-117 15-90 (146)
370 3k69_A Putative transcription 93.3 0.078 2.7E-06 43.0 4.4 48 56-113 27-74 (162)
371 3oop_A LIN2960 protein; protei 93.3 0.032 1.1E-06 43.9 2.0 69 40-117 37-105 (143)
372 2gxg_A 146AA long hypothetical 93.2 0.068 2.3E-06 41.9 3.8 68 40-117 37-104 (146)
373 3r0a_A Putative transcriptiona 93.1 0.039 1.3E-06 42.5 2.2 48 41-94 27-75 (123)
374 2vn2_A DNAD, chromosome replic 93.0 0.069 2.4E-06 41.4 3.5 34 57-94 51-84 (128)
375 2lkp_A Transcriptional regulat 93.0 0.16 5.6E-06 38.5 5.6 71 10-94 8-78 (119)
376 2eth_A Transcriptional regulat 93.0 0.072 2.5E-06 42.4 3.7 69 40-117 44-112 (154)
377 3boq_A Transcriptional regulat 93.0 0.092 3.1E-06 42.0 4.3 68 41-117 48-116 (160)
378 3fm5_A Transcriptional regulat 92.9 0.055 1.9E-06 42.8 2.9 70 40-117 39-108 (150)
379 2rdp_A Putative transcriptiona 92.9 0.2 6.9E-06 39.4 6.3 68 41-117 43-110 (150)
380 1jgs_A Multiple antibiotic res 92.9 0.06 2E-06 41.9 3.0 68 41-117 35-102 (138)
381 2pg4_A Uncharacterized protein 92.8 0.065 2.2E-06 39.0 2.9 63 45-117 20-83 (95)
382 2nnn_A Probable transcriptiona 92.7 0.063 2.2E-06 41.7 2.9 69 40-117 38-106 (140)
383 1sfx_A Conserved hypothetical 92.7 0.056 1.9E-06 40.0 2.5 48 40-94 20-67 (109)
384 2p4w_A Transcriptional regulat 92.7 0.066 2.3E-06 45.1 3.2 73 34-114 9-81 (202)
385 3tgn_A ADC operon repressor AD 92.6 0.088 3E-06 41.3 3.7 68 40-117 38-105 (146)
386 2bv6_A MGRA, HTH-type transcri 92.6 0.058 2E-06 42.2 2.6 69 40-117 37-105 (142)
387 2x4h_A Hypothetical protein SS 92.6 0.067 2.3E-06 41.8 2.9 49 56-117 30-78 (139)
388 2frh_A SARA, staphylococcal ac 92.6 0.056 1.9E-06 41.7 2.4 70 41-117 38-107 (127)
389 2obp_A Putative DNA-binding pr 92.6 0.077 2.6E-06 38.8 2.9 54 56-117 35-88 (96)
390 2fbh_A Transcriptional regulat 92.5 0.074 2.5E-06 41.7 3.0 68 41-117 38-106 (146)
391 3hsr_A HTH-type transcriptiona 92.4 0.031 1.1E-06 43.8 0.7 68 41-117 37-104 (140)
392 1z91_A Organic hydroperoxide r 92.4 0.073 2.5E-06 41.8 2.9 70 40-118 40-109 (147)
393 2fu4_A Ferric uptake regulatio 92.3 0.06 2.1E-06 38.1 2.1 50 40-94 17-71 (83)
394 3eco_A MEPR; mutlidrug efflux 92.3 0.061 2.1E-06 41.9 2.3 71 40-117 31-101 (139)
395 3bj6_A Transcriptional regulat 92.2 0.072 2.5E-06 42.1 2.7 68 41-117 41-108 (152)
396 4hbl_A Transcriptional regulat 92.2 0.049 1.7E-06 43.2 1.6 69 40-117 41-109 (149)
397 3bpv_A Transcriptional regulat 92.1 0.073 2.5E-06 41.3 2.6 69 40-117 29-97 (138)
398 2qww_A Transcriptional regulat 92.1 0.074 2.5E-06 42.2 2.7 68 41-117 42-111 (154)
399 3bro_A Transcriptional regulat 92.0 0.1 3.5E-06 40.6 3.3 70 41-117 35-104 (141)
400 3cjn_A Transcriptional regulat 92.0 0.07 2.4E-06 42.8 2.3 69 40-117 52-120 (162)
401 2fbi_A Probable transcriptiona 91.9 0.053 1.8E-06 42.3 1.5 69 40-117 36-104 (142)
402 1lj9_A Transcriptional regulat 91.8 0.083 2.9E-06 41.3 2.5 68 41-117 30-97 (144)
403 2h09_A Transcriptional regulat 91.7 0.12 4.1E-06 41.2 3.5 56 47-117 47-102 (155)
404 1ylf_A RRF2 family protein; st 91.7 0.073 2.5E-06 42.5 2.1 60 35-112 15-74 (149)
405 1bja_A Transcription regulator 91.5 0.15 5.3E-06 37.0 3.5 61 42-118 18-79 (95)
406 2a61_A Transcriptional regulat 91.5 0.088 3E-06 41.2 2.5 69 40-117 33-101 (145)
407 1q1h_A TFE, transcription fact 91.4 0.1 3.6E-06 39.0 2.7 47 41-93 19-65 (110)
408 2pn6_A ST1022, 150AA long hypo 91.4 0.12 4E-06 41.1 3.1 46 41-93 4-49 (150)
409 4aik_A Transcriptional regulat 91.2 0.16 5.4E-06 40.5 3.7 69 41-117 32-100 (151)
410 2w25_A Probable transcriptiona 91.1 0.13 4.6E-06 40.8 3.1 46 41-93 8-53 (150)
411 2cfx_A HTH-type transcriptiona 91.0 0.14 4.8E-06 40.4 3.2 46 41-93 6-51 (144)
412 1s3j_A YUSO protein; structura 90.9 0.45 1.5E-05 37.5 6.2 67 42-117 39-105 (155)
413 1uly_A Hypothetical protein PH 90.6 0.17 5.7E-06 42.2 3.4 53 34-94 14-66 (192)
414 2cyy_A Putative HTH-type trans 90.5 0.15 5.2E-06 40.5 3.0 46 41-93 8-53 (151)
415 2p5v_A Transcriptional regulat 90.3 0.17 5.8E-06 40.8 3.1 46 41-93 11-56 (162)
416 3f3x_A Transcriptional regulat 90.2 0.42 1.4E-05 37.2 5.3 68 40-117 37-104 (144)
417 3nqo_A MARR-family transcripti 90.2 0.14 4.9E-06 42.4 2.6 73 39-118 40-112 (189)
418 2dbb_A Putative HTH-type trans 90.2 0.21 7E-06 39.7 3.5 46 41-93 10-55 (151)
419 3i4p_A Transcriptional regulat 90.0 0.18 6.3E-06 40.6 3.0 46 41-93 4-49 (162)
420 1i1g_A Transcriptional regulat 89.9 0.19 6.4E-06 39.3 3.0 45 42-93 6-50 (141)
421 1xd7_A YWNA; structural genomi 89.9 0.33 1.1E-05 38.4 4.4 45 57-113 24-68 (145)
422 2e1c_A Putative HTH-type trans 89.8 0.21 7E-06 40.8 3.2 46 41-93 28-73 (171)
423 2cg4_A Regulatory protein ASNC 89.8 0.18 6E-06 40.2 2.7 46 41-93 9-54 (152)
424 3u1d_A Uncharacterized protein 89.7 1.2 4.1E-05 35.3 7.4 72 41-118 30-106 (151)
425 2v79_A DNA replication protein 89.6 0.24 8.2E-06 38.7 3.3 54 57-114 51-104 (135)
426 2fbk_A Transcriptional regulat 89.5 0.17 5.9E-06 41.4 2.6 71 41-117 70-140 (181)
427 2qvo_A Uncharacterized protein 89.4 0.17 5.8E-06 36.7 2.2 52 57-117 30-81 (95)
428 2fxa_A Protease production reg 89.3 0.15 5.1E-06 43.0 2.1 69 40-117 48-116 (207)
429 2ia0_A Putative HTH-type trans 89.2 0.23 8E-06 40.5 3.1 46 41-93 18-63 (171)
430 2esh_A Conserved hypothetical 89.1 0.51 1.7E-05 35.8 4.8 73 36-117 9-90 (118)
431 1p6r_A Penicillinase repressor 88.6 0.14 4.7E-06 36.1 1.2 51 41-94 10-60 (82)
432 3hrs_A Metalloregulator SCAR; 88.6 0.2 7E-06 42.5 2.4 50 56-117 19-68 (214)
433 2d1h_A ST1889, 109AA long hypo 88.5 0.22 7.6E-06 36.6 2.3 35 56-94 35-69 (109)
434 2qlz_A Transcription factor PF 88.5 0.13 4.3E-06 44.4 1.0 52 34-93 6-57 (232)
435 4esf_A PADR-like transcription 88.3 0.48 1.6E-05 35.9 4.1 76 35-118 6-87 (117)
436 4b8x_A SCO5413, possible MARR- 87.8 0.15 5.1E-06 40.3 1.0 68 43-117 38-105 (147)
437 2oo3_A Protein involved in cat 87.8 0.84 2.9E-05 40.3 5.9 97 202-302 92-202 (283)
438 2k4b_A Transcriptional regulat 87.7 0.24 8.1E-06 36.5 2.0 51 41-94 36-86 (99)
439 2o03_A Probable zinc uptake re 86.8 0.41 1.4E-05 37.1 3.0 51 38-94 9-64 (131)
440 1ku9_A Hypothetical protein MJ 86.8 0.27 9.3E-06 38.5 2.0 47 42-94 28-74 (152)
441 4fx0_A Probable transcriptiona 86.7 0.32 1.1E-05 38.5 2.4 69 42-117 35-105 (148)
442 1zkd_A DUF185; NESG, RPR58, st 86.7 2.7 9.2E-05 38.9 8.9 61 170-235 54-121 (387)
443 3elk_A Putative transcriptiona 86.6 0.41 1.4E-05 36.3 2.8 77 34-118 8-90 (117)
444 3k2z_A LEXA repressor; winged 86.5 0.44 1.5E-05 39.7 3.2 35 56-94 23-57 (196)
445 2lnb_A Z-DNA-binding protein 1 86.4 0.37 1.3E-05 33.2 2.2 47 41-93 20-66 (80)
446 3f8b_A Transcriptional regulat 86.3 0.72 2.5E-05 34.8 4.1 76 34-117 6-89 (116)
447 3tos_A CALS11; methyltransfera 85.3 1.9 6.5E-05 37.5 6.8 95 201-299 69-218 (257)
448 2dk5_A DNA-directed RNA polyme 85.1 0.54 1.8E-05 33.9 2.7 47 42-93 22-68 (91)
449 1sfu_A 34L protein; protein/Z- 84.8 0.94 3.2E-05 31.2 3.6 35 56-94 28-62 (75)
450 2xvc_A ESCRT-III, SSO0910; cel 84.4 0.42 1.4E-05 30.7 1.6 46 42-93 12-57 (59)
451 3ggo_A Prephenate dehydrogenas 84.3 4.3 0.00015 36.4 9.0 90 202-296 33-126 (314)
452 3hhh_A Transcriptional regulat 84.2 0.7 2.4E-05 35.0 3.1 77 34-118 7-89 (116)
453 1p4x_A Staphylococcal accessor 84.1 0.62 2.1E-05 40.5 3.2 71 40-117 158-228 (250)
454 2fe3_A Peroxide operon regulat 83.7 0.64 2.2E-05 36.7 2.8 50 39-94 21-75 (145)
455 1j5y_A Transcriptional regulat 83.7 0.6 2E-05 38.6 2.8 48 40-93 21-69 (187)
456 1g60_A Adenine-specific methyl 83.5 1.3 4.4E-05 38.6 5.0 50 188-241 201-251 (260)
457 1okr_A MECI, methicillin resis 83.3 0.28 9.7E-06 37.2 0.6 46 42-94 12-61 (123)
458 1xma_A Predicted transcription 82.6 0.53 1.8E-05 37.2 1.9 74 36-117 37-118 (145)
459 1yg2_A Gene activator APHA; vi 82.1 0.89 3E-05 37.2 3.2 66 41-115 3-77 (179)
460 3g7u_A Cytosine-specific methy 82.0 4.8 0.00017 37.1 8.5 119 203-347 3-145 (376)
461 1jhg_A Trp operon repressor; c 81.3 1.2 4.2E-05 32.6 3.3 40 39-86 44-83 (101)
462 1v4r_A Transcriptional repress 80.7 0.65 2.2E-05 34.0 1.7 51 37-94 16-68 (102)
463 2xig_A Ferric uptake regulatio 80.6 1.2 4E-05 35.4 3.3 50 39-94 26-80 (150)
464 3l7w_A Putative uncharacterize 80.3 0.95 3.2E-05 33.6 2.5 71 38-117 7-81 (108)
465 3pvc_A TRNA 5-methylaminomethy 79.8 1.3 4.4E-05 44.5 4.0 119 201-352 58-232 (689)
466 3ps9_A TRNA 5-methylaminomethy 79.7 2.7 9.2E-05 42.0 6.4 120 201-353 66-241 (676)
467 2g9w_A Conserved hypothetical 79.6 0.78 2.7E-05 35.7 1.9 52 41-94 10-61 (138)
468 1hsj_A Fusion protein consisti 79.2 1 3.6E-05 42.9 3.0 50 40-94 404-453 (487)
469 3cta_A Riboflavin kinase; stru 79.1 0.96 3.3E-05 38.6 2.5 54 56-118 26-79 (230)
470 4esb_A Transcriptional regulat 79.0 0.78 2.7E-05 34.6 1.7 69 41-117 10-84 (115)
471 3mwm_A ZUR, putative metal upt 79.0 1.1 3.7E-05 35.0 2.6 66 39-110 13-79 (139)
472 1sd4_A Penicillinase repressor 78.8 0.58 2E-05 35.6 0.9 51 41-94 11-61 (126)
473 1fx7_A Iron-dependent represso 78.4 0.95 3.2E-05 38.7 2.2 47 59-117 26-72 (230)
474 2py6_A Methyltransferase FKBM; 78.1 3.1 0.0001 38.9 5.8 40 200-239 225-267 (409)
475 2vxz_A Pyrsv_GP04; viral prote 78.0 1.1 3.7E-05 35.1 2.2 45 42-94 13-57 (165)
476 2p8t_A Hypothetical protein PH 77.3 1.2 4E-05 37.2 2.4 48 57-117 30-77 (200)
477 3b1f_A Putative prephenate deh 77.1 12 0.00042 32.5 9.3 88 203-295 7-98 (290)
478 2o0m_A Transcriptional regulat 76.5 0.52 1.8E-05 43.1 0.0 62 41-118 21-82 (345)
479 1pl8_A Human sorbitol dehydrog 76.3 6.4 0.00022 35.7 7.4 93 199-299 169-274 (356)
480 3i71_A Ethanolamine utilizatio 75.1 3 0.0001 26.8 3.2 43 56-111 17-59 (68)
481 3iht_A S-adenosyl-L-methionine 74.5 7.6 0.00026 30.8 6.2 109 190-300 31-149 (174)
482 2dph_A Formaldehyde dismutase; 73.6 8.3 0.00028 35.6 7.5 99 199-300 183-301 (398)
483 1z6r_A MLC protein; transcript 73.1 2.8 9.5E-05 39.0 4.1 51 37-94 13-63 (406)
484 2hoe_A N-acetylglucosamine kin 72.6 1.6 5.3E-05 40.4 2.2 53 34-94 14-66 (380)
485 3two_A Mannitol dehydrogenase; 72.3 6.8 0.00023 35.4 6.5 90 199-299 174-266 (348)
486 2qq9_A Diphtheria toxin repres 71.6 2.5 8.4E-05 35.9 3.1 49 57-117 24-72 (226)
487 4dvj_A Putative zinc-dependent 71.2 8.7 0.0003 35.0 6.9 90 201-298 171-270 (363)
488 1f8f_A Benzyl alcohol dehydrog 71.0 6.5 0.00022 35.9 6.1 94 199-300 188-291 (371)
489 3c85_A Putative glutathione-re 70.9 24 0.00083 28.1 9.0 90 202-297 39-138 (183)
490 3mag_A VP39; methylated adenin 70.8 13 0.00046 32.7 7.5 79 201-302 60-142 (307)
491 2gqq_A Leucine-responsive regu 70.8 0.97 3.3E-05 36.3 0.3 45 42-93 15-59 (163)
492 1mzb_A Ferric uptake regulatio 70.7 1.9 6.5E-05 33.4 2.0 51 39-94 17-72 (136)
493 1pqw_A Polyketide synthase; ro 70.7 10 0.00035 30.8 6.7 90 199-300 36-139 (198)
494 1tc3_C Protein (TC3 transposas 70.1 3 0.0001 25.1 2.5 29 57-89 21-49 (51)
495 2w48_A Sorbitol operon regulat 70.0 2.8 9.7E-05 37.5 3.3 33 56-92 20-52 (315)
496 2pjp_A Selenocysteine-specific 69.7 2.2 7.4E-05 32.4 2.1 34 57-94 20-53 (121)
497 3eyi_A Z-DNA-binding protein 1 69.6 4 0.00014 27.3 3.0 47 42-94 12-58 (72)
498 1e3j_A NADP(H)-dependent ketos 69.4 33 0.0011 30.7 10.5 92 199-299 166-272 (352)
499 3fwz_A Inner membrane protein 68.8 21 0.00071 27.2 7.8 88 202-296 7-103 (140)
500 3s2e_A Zinc-containing alcohol 68.6 9 0.00031 34.4 6.4 90 199-299 164-264 (340)
No 1
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=3e-55 Score=415.26 Aligned_cols=366 Identities=73% Similarity=1.208 Sum_probs=306.1
Q ss_pred CCCCCCccc-cCCCCCccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhc-CCCCCCCHHHHHhhCCCCCCCCcchH
Q 017777 1 MGSTSSETQ-ISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKA-GPDAFMSPKDIASQLPTKNPDAHTVL 78 (366)
Q Consensus 1 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~-~~~~~~t~~ela~~~~~~~~~~~~~l 78 (366)
|||++.+.. ..|...++++.+..+++++.+++.+++|++|++||||+.|.+. ++++|+|++|||++++..+|.+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l 80 (368)
T 3reo_A 1 MGSTGNAEIQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVML 80 (368)
T ss_dssp ----------------CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHH
T ss_pred CCCcccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhH
Confidence 788765532 2346668889999999999999999999999999999999984 33467999999999983233234599
Q ss_pred HHHHHHHhcccccccccccCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhh
Q 017777 79 DRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKA 158 (366)
Q Consensus 79 ~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~ 158 (366)
+||||+|++.|+++++....++|..+++|++|+.++.|+.+.++.++++++.+...+.++..|.+|.+++++|.++|+..
T Consensus 81 ~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~ 160 (368)
T 3reo_A 81 DRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKA 160 (368)
T ss_dssp HHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHH
Confidence 99999999999999731000122113789999999999887777889999888777788899999999999999999999
Q ss_pred hCCCchhhcccCchHHHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHh
Q 017777 159 YGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQ 238 (366)
Q Consensus 159 ~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 238 (366)
+|.++|+|+.++++..+.|.++|........+.+++.++++.+..+|||||||+|.++..+++++|+++++++|+|.+++
T Consensus 161 ~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 240 (368)
T 3reo_A 161 YGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQ 240 (368)
T ss_dssp SSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT
T ss_pred hCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHH
Confidence 99999999999999999999999998887778888888657788999999999999999999999999999999999999
Q ss_pred hCCCCCCceEEEccCCCCCCCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcc
Q 017777 239 DAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVD 318 (366)
Q Consensus 239 ~a~~~~~v~~~~~D~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~ 318 (366)
.+++.++++++.+|+++++|.+|+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++.............++
T Consensus 241 ~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d 320 (368)
T 3reo_A 241 DAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTD 320 (368)
T ss_dssp TCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHH
T ss_pred hhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhh
Confidence 99988999999999998888779999999999999999999999999999999999999998876544333333445677
Q ss_pred hhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEecC
Q 017777 319 CIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKSA 366 (366)
Q Consensus 319 ~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~~ 366 (366)
+.|+....+++.||.++|.++|+++||+.+++.+..+..++||++|+|
T Consensus 321 ~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k~~ 368 (368)
T 3reo_A 321 ALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLKTA 368 (368)
T ss_dssp HHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEECCC
T ss_pred HHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEeCC
Confidence 777764358999999999999999999999999999999999999987
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=6.7e-55 Score=412.10 Aligned_cols=359 Identities=62% Similarity=1.093 Sum_probs=305.4
Q ss_pred CCCCCCccccCCCCCccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCC-CCCCCcchHH
Q 017777 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPT-KNPDAHTVLD 79 (366)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~-~~~~~~~~l~ 79 (366)
|||+... |.+.++++++..+++++++++.+++|++|++||||+.|.+.+ ++|+|++|||+++++ ++|..+..++
T Consensus 5 ~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g-~~~~t~~eLA~~~g~~~~~~~~~~l~ 79 (364)
T 3p9c_A 5 MGSTAAD----MAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAANPEAPDMVD 79 (364)
T ss_dssp ------------CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTT-TCCBCHHHHHHTTTCTTCTTHHHHHH
T ss_pred CCCCCCC----ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcC-CCCCCHHHHHHhcCCCCCccchhhHH
Confidence 5664433 577788899999999999999999999999999999999842 249999999999995 3222344999
Q ss_pred HHHHHHhcccccccccccCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhh
Q 017777 80 RILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAY 159 (366)
Q Consensus 80 ~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~ 159 (366)
||||+|++.|+|+++.+...+|..+++|++|+.++.|+.+.++.++++++.+...+.++..|.+|.+++++|.++|+..+
T Consensus 80 rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~ 159 (364)
T 3p9c_A 80 RILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAY 159 (364)
T ss_dssp HHHHHHHHTTSEEEEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHhCCCEEEeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhc
Confidence 99999999999997410001221137899999999988877677899998877777788999999999999999999999
Q ss_pred CCCchhhcccCchHHHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhh
Q 017777 160 GMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQD 239 (366)
Q Consensus 160 g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 239 (366)
|.++|+|+.++|+..+.|.++|........+.+++.++++.+..+|||||||+|.++..+++++|+++++++|+|.+++.
T Consensus 160 g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 239 (364)
T 3p9c_A 160 GMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISE 239 (364)
T ss_dssp SSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT
T ss_pred CCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHh
Confidence 99999999999999999999999988877888888887677889999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEccCCCCCCCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcch
Q 017777 240 APAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDC 319 (366)
Q Consensus 240 a~~~~~v~~~~~D~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~ 319 (366)
+++.++++++.+|+++++|.+|+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++.............+++
T Consensus 240 a~~~~~v~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~ 319 (364)
T 3p9c_A 240 APQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDM 319 (364)
T ss_dssp CCCCTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHH
T ss_pred hhhcCCeEEEeCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHH
Confidence 99889999999999988877799999999999999999999999999999999999999988765443322233456788
Q ss_pred hhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 320 IMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 320 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
.|+....+++.||.++|.++|+++||+.+++.+..+..++||++|
T Consensus 320 ~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 320 IMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp HHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHhcccCCccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 777543589999999999999999999999999999999999997
No 3
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=7.2e-55 Score=410.25 Aligned_cols=332 Identities=21% Similarity=0.338 Sum_probs=295.2
Q ss_pred cHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccc
Q 017777 17 DEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLR 96 (366)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 96 (366)
+++.++.|.+++.||+.+++|++|++|||||.|.+.+ +|+|++|||+++++ +++.++|||++|++.|++++..
T Consensus 5 e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~--~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~- 77 (353)
T 4a6d_A 5 EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAP--GPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVET- 77 (353)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS--SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCC--CCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEec-
Confidence 3478889999999999999999999999999998854 69999999999999 9999999999999999998642
Q ss_pred cCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhC---CCchhhcccCchH
Q 017777 97 NLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYG---MNAFDYHGKDLRF 173 (366)
Q Consensus 97 ~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g---~~~~~~~~~~~~~ 173 (366)
++| .++|++|+.++.++...++.+++.++.+. .+..+..|.+|.++++++.+++...+| ..+|+++.++++.
T Consensus 78 --~~~--~~~y~~t~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~ 152 (353)
T 4a6d_A 78 --RGG--KAFYRNTELSSDYLTTVSPTSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGE 152 (353)
T ss_dssp --ETT--EEEEEECHHHHHHHSTTSTTCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHH
T ss_pred --cCc--cceeeCCHHHHHHhhcCCchHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHH
Confidence 122 56899999999877777778899888775 355678999999999999999998887 3578888999999
Q ss_pred HHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC------CCCce
Q 017777 174 NKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA------FPGVE 247 (366)
Q Consensus 174 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~v~ 247 (366)
...|.++|........+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+||+
T Consensus 153 ~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~ 231 (353)
T 4a6d_A 153 RLQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQID 231 (353)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCcee
Confidence 999999999988888888999888 88899999999999999999999999999999999999887653 27899
Q ss_pred EEEccCCC-CCCCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCC
Q 017777 248 HVGGDMFV-SVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNP 326 (366)
Q Consensus 248 ~~~~D~~~-~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (366)
++.+|+++ +.|.+|+|+++++||+|+|+++.++|++++++|+|||+|+|+|.+.+++...+ .....+++.|+...
T Consensus 232 ~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~- 307 (353)
T 4a6d_A 232 FQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP---LLTQLYSLNMLVQT- 307 (353)
T ss_dssp EEESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSS-
T ss_pred eecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhC-
Confidence 99999998 55666999999999999999999999999999999999999999987764443 23456788888875
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 327 GGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 327 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
+|++||.+||+++|++|||+.+++++.++..++|+++|.
T Consensus 308 ~g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArKg 346 (353)
T 4a6d_A 308 EGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARKG 346 (353)
T ss_dssp SCCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEECC
T ss_pred CCcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEec
Confidence 899999999999999999999999999999999999996
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=1.4e-48 Score=367.28 Aligned_cols=325 Identities=25% Similarity=0.362 Sum_probs=287.2
Q ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccccc
Q 017777 16 SDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSL 95 (366)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 95 (366)
...++...+++++.+++.+++|++++++|||+.|.+ +|+|++|||+++++ +++.++|||++|++.|+|++.
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~~- 88 (348)
T 3lst_A 18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD----GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRES- 88 (348)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT----SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEec-
Confidence 345778889999999999999999999999999987 59999999999999 999999999999999999962
Q ss_pred ccCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHH
Q 017777 96 RNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNK 175 (366)
Q Consensus 96 ~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 175 (366)
+++|++|+.++.|..+ ++.++++++.+...+..++.|.+|.+.+++|.++|+..+|.++|+|+.++|+...
T Consensus 89 --------~~~y~~t~~s~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~ 159 (348)
T 3lst_A 89 --------DGRFALTDKGAALRSD-SPVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEA 159 (348)
T ss_dssp --------TTEEEECTTTGGGSTT-SSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHH
T ss_pred --------CCEEecCHHHHHHhcC-CCccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHH
Confidence 5899999999988654 3467888887766776789999999999999999999999889999999999999
Q ss_pred HHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC-----CCCceEEE
Q 017777 176 IFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA-----FPGVEHVG 250 (366)
Q Consensus 176 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~ 250 (366)
.|.++|........+.+++.++ +++..+|||||||+|.++..+++++|+++++++|++.++...+. .++++++.
T Consensus 160 ~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~ 238 (348)
T 3lst_A 160 LYYEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVE 238 (348)
T ss_dssp HHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEE
T ss_pred HHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEe
Confidence 9999999988878888999888 88899999999999999999999999999999999888763221 15799999
Q ss_pred ccCCCCCCCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCcc
Q 017777 251 GDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKE 330 (366)
Q Consensus 251 ~D~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (366)
+|+++++|..|+|++.++||+|+++++..+|++++++|||||+|+|.|...++.... .....+++.|+.. .+++.
T Consensus 239 ~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~-~~~~~ 313 (348)
T 3lst_A 239 GDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLAA-RTGQE 313 (348)
T ss_dssp CCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHHT-TSCCC
T ss_pred cCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhhhcChhhhhc-CCCcC
Confidence 999887775599999999999999999999999999999999999999987765322 2234567777765 48999
Q ss_pred CCHHHHHHHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 331 RTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 331 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
+|.++|.++|+++||+++++++..+..++||++|
T Consensus 314 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 314 RTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp CBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred CCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 9999999999999999999999778899999987
No 5
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=2.2e-48 Score=368.51 Aligned_cols=323 Identities=23% Similarity=0.421 Sum_probs=287.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccC
Q 017777 19 EANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNL 98 (366)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 98 (366)
....++++++.+++.+++|++++++|||+.|.+ +|+|++|||+++++ +++.++|||++|++.|+++++
T Consensus 37 ~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~~---- 104 (369)
T 3gwz_A 37 AAEETVNDILQGAWKARAIHVAVELGVPELLQE----GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDDL---- 104 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEEC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEEe----
Confidence 667789999999999999999999999999986 59999999999999 999999999999999999963
Q ss_pred CCCccccc-cccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHHHH
Q 017777 99 PDGKVERL-YGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIF 177 (366)
Q Consensus 99 ~~g~~~~~-y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 177 (366)
. +++ |++|+.++.|..+ ++.++.+++.+...+..+..|.+|.+.++++.++|...+|.++|+|+.++++....|
T Consensus 105 ~----~~~~y~~t~~s~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f 179 (369)
T 3gwz_A 105 G----HDDLFAQNALSAVLLPD-PASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELF 179 (369)
T ss_dssp S----STTEEECCHHHHTTSCC-TTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHH
T ss_pred C----CCceEecCHHHHHHhcC-CchhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHH
Confidence 2 577 9999999987544 446788888877666677899999999999999999999988999999999999999
Q ss_pred HHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC-------CCCceEEE
Q 017777 178 NNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA-------FPGVEHVG 250 (366)
Q Consensus 178 ~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~ 250 (366)
..+|........+.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|+|.+++.+++ .++|+++.
T Consensus 180 ~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~ 258 (369)
T 3gwz_A 180 NRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILP 258 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEec
Confidence 99999888877888888887 88889999999999999999999999999999999888887764 26899999
Q ss_pred ccCCCCCCC-CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCc
Q 017777 251 GDMFVSVPK-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGK 329 (366)
Q Consensus 251 ~D~~~~~~~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (366)
+|+++++|. .|+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++.... . ...+++.|+.. .+++
T Consensus 259 ~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~-~~g~ 332 (369)
T 3gwz_A 259 GDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAA----S-TLFVDLLLLVL-VGGA 332 (369)
T ss_dssp CCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCH----H-HHHHHHHHHHH-HSCC
T ss_pred cCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC----c-hhHhhHHHHhh-cCCc
Confidence 999987774 499999999999999999999999999999999999999988765322 1 34667777765 4899
Q ss_pred cCCHHHHHHHHHHcCCceeEEEE-CCCceeEEEEEec
Q 017777 330 ERTEQEFRALAKAAGFQGFQVVS-SAFNTYIMEFLKS 365 (366)
Q Consensus 330 ~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vie~~k~ 365 (366)
.+|.++|.++|+++||+++++++ ..+..++||++|.
T Consensus 333 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~a 369 (369)
T 3gwz_A 333 ERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRRA 369 (369)
T ss_dssp CBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEEC
T ss_pred cCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEeC
Confidence 99999999999999999999999 6788999999974
No 6
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=1.4e-47 Score=361.88 Aligned_cols=343 Identities=32% Similarity=0.490 Sum_probs=288.6
Q ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccccc
Q 017777 16 SDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSL 95 (366)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 95 (366)
+-.++...+++++.+++.+++|++++++|||+.|.+.+ +|+|++|||+++++ +|.+++.++|||++|++.|+|++..
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~ 82 (358)
T 1zg3_A 6 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHG--KPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTI 82 (358)
T ss_dssp CCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHT--SCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcC--CCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEec
Confidence 34466678899999999999999999999999999742 49999999999999 3445889999999999999998630
Q ss_pred c-cCC-CCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcC--CchhHhhhCCCchhhcccCc
Q 017777 96 R-NLP-DGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEG--GIPFNKAYGMNAFDYHGKDL 171 (366)
Q Consensus 96 ~-~~~-~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~~~~~~~~g~~~~~~~~~~~ 171 (366)
. ... +|..+++|++|+.++.|+.+. +.++++++.+...+.++..|.+|.+.++++ .++|+..+|.++|+++.++|
T Consensus 83 ~~~~~~~g~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p 161 (358)
T 1zg3_A 83 VKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDS 161 (358)
T ss_dssp ECCSSSSCCCEEEEEECHHHHTTCTTS-TTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGG
T ss_pred ccccccCCCCCCEEeCCHHHHHHhCCC-CccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcCh
Confidence 0 001 111137899999999777554 367899988876777788999999999998 68899889989999999999
Q ss_pred hHHH--HHHHHhhhcchhhHHHHHHhcc-CCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceE
Q 017777 172 RFNK--IFNNGMSSHSTITMKKILENYK-GFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEH 248 (366)
Q Consensus 172 ~~~~--~~~~~m~~~~~~~~~~~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 248 (366)
+... .|...|........ .+++.++ .+.+..+|||||||+|.++..+++++|+++++++|++.+++.+++.+++++
T Consensus 162 ~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 240 (358)
T 1zg3_A 162 ESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNF 240 (358)
T ss_dssp GHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEE
T ss_pred hhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEE
Confidence 9999 99999988776555 6777772 266778999999999999999999999999999999999998887788999
Q ss_pred EEccCCCCCCCCCEEEeccccccCChHHHHHHHHHHHHhCCC---CcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC
Q 017777 249 VGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPV---NGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN 325 (366)
Q Consensus 249 ~~~D~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p---gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (366)
+.+|+++++|.+|+|+++++||+|+++++..+|++++++|+| ||+|+|.|...++....+........+++.|+..
T Consensus 241 ~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~- 319 (358)
T 1zg3_A 241 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM- 319 (358)
T ss_dssp EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHH-
T ss_pred EeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhcc-
Confidence 999999877767999999999999999999999999999999 9999999998766543211122345667777664
Q ss_pred CCCccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 326 PGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 326 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
.+++.++.++|.++|+++||+++++++.++..++||++|
T Consensus 320 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 320 FLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp HSCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 378999999999999999999999999888889999986
No 7
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=1.8e-47 Score=362.78 Aligned_cols=357 Identities=48% Similarity=0.797 Sum_probs=276.1
Q ss_pred CCCccccCCCCCccHHHHHHHH--HHHhhhHHHHHHHHHHhhChHHHHhhcCCCCC---CCHHHHHhhCCCC--CCCCcc
Q 017777 4 TSSETQISPAQGSDEEANLLAM--QLTSASVLPMVLKSAIELDLLEIIAKAGPDAF---MSPKDIASQLPTK--NPDAHT 76 (366)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~---~t~~ela~~~~~~--~~~~~~ 76 (366)
|++..+++..+ +..++...++ +++.+++.+++|++|+++|||+.|.+.+ +| +|++|||++++++ +|.+++
T Consensus 7 ~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g--~pg~~~t~~eLA~~~~~~~~~~~~~~ 83 (372)
T 1fp1_D 7 TKEDNQISATS-EQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKAT--PPGAFMSPSEIASKLPASTQHSDLPN 83 (372)
T ss_dssp -------------CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCS--STTCCBCHHHHHTTSCGGGCCTTHHH
T ss_pred cccccccCchh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcC--CCCCCcCHHHHHHhcCCCCCCCcChH
Confidence 34444454443 4557777788 9999999999999999999999999741 15 9999999999982 454788
Q ss_pred hHHHHHHHHhcccccccccccCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcC-Cchh
Q 017777 77 VLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEG-GIPF 155 (366)
Q Consensus 77 ~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~~ 155 (366)
.++|||++|++.|+|++..+..++|..+++|++|+.++.|+.+.+..++++++.+...+.++..|.+|.+.++++ .++|
T Consensus 84 ~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~ 163 (372)
T 1fp1_D 84 RLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLF 163 (372)
T ss_dssp HHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC----
T ss_pred HHHHHHHHHhhCCceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChh
Confidence 999999999999999863000011111268999999997775533257888888876777888999999999998 8899
Q ss_pred HhhhCCCchhhcccCchHHHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchh
Q 017777 156 NKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPH 235 (366)
Q Consensus 156 ~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~ 235 (366)
+..+|.++|+++.++|+....|...|........+.+++.++.+.+..+|||||||+|.++..+++++|+++++++|+|.
T Consensus 164 ~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~ 243 (372)
T 1fp1_D 164 KNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ 243 (372)
T ss_dssp ----------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH
T ss_pred HHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHH
Confidence 98889889999999999999999999988777777888888657788999999999999999999999999999999999
Q ss_pred HHhhCCCCCCceEEEccCCCCCCCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhh
Q 017777 236 VIQDAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVI 315 (366)
Q Consensus 236 ~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~ 315 (366)
+++.+++.++++++.+|+++++|.+|+|++.++||+|+++++..+|++++++|+|||+++|.|...++............
T Consensus 244 ~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~ 323 (372)
T 1fp1_D 244 VIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVS 323 (372)
T ss_dssp HHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHH
T ss_pred HHHhhhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHH
Confidence 99999888899999999988777679999999999999999999999999999999999999988766533221111344
Q ss_pred hcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEEC-CCceeEEEEEe
Q 017777 316 HVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSS-AFNTYIMEFLK 364 (366)
Q Consensus 316 ~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~~k 364 (366)
.+++.|+.. .+++.++.++|.++|+++||+++++++. .+.+++||++|
T Consensus 324 ~~d~~~~~~-~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 324 TLDNLMFIT-VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHHHHHH-HSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred HhhHHHHhc-cCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 566666654 3688899999999999999999999884 34269999986
No 8
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=6.9e-48 Score=360.30 Aligned_cols=315 Identities=25% Similarity=0.362 Sum_probs=276.4
Q ss_pred HHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCc
Q 017777 23 LAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGK 102 (366)
Q Consensus 23 ~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~ 102 (366)
.+++++.+++.+++|++|+++|||+.|.+ ||.|++|||+++++ +++.++|||++|++.|++++. .
T Consensus 8 ~l~~~~~g~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~----~--- 72 (332)
T 3i53_A 8 IGLRALADLATPMAVRVAATLRVADHIAA----GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRD----G--- 72 (332)
T ss_dssp SCHHHHTCCHHHHHHHHHHHHTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----T---
T ss_pred HHHHHHHhhHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEec----C---
Confidence 47899999999999999999999999987 59999999999999 999999999999999999963 1
Q ss_pred cccccccchhchhhhcCCCCCChhHHHHhhcChhHH-HhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHHHHHHHh
Q 017777 103 VERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLM-ESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGM 181 (366)
Q Consensus 103 ~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 181 (366)
+++|.+|+.++.+..+ ++.++.+++.+...+..+ ..|.+|.++++++.++|+..+|.++|+++.++++....|..+|
T Consensus 73 -~~~y~~t~~s~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 150 (332)
T 3i53_A 73 -QGVYGLTEFGEQLRDD-HAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLM 150 (332)
T ss_dssp -TSBEEECTTGGGGSTT-CTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHH
T ss_pred -CCeEEcCHhHHHHhcC-CchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHH
Confidence 5899999999988654 445788888775444445 7899999999999999999999889999999999999999999
Q ss_pred hhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC-------CCCceEEEccCC
Q 017777 182 SSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA-------FPGVEHVGGDMF 254 (366)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~ 254 (366)
........+.+++.++ +.+..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++ .++++++.+|++
T Consensus 151 ~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 229 (332)
T 3i53_A 151 SHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF 229 (332)
T ss_dssp HHHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCC
Confidence 9877766667777776 77789999999999999999999999999999999888887764 268999999999
Q ss_pred CCCCC-CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCH
Q 017777 255 VSVPK-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTE 333 (366)
Q Consensus 255 ~~~~~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 333 (366)
+++|. .|+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++. .. ...+++.|+.. .+++.+|.
T Consensus 230 ~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~------~~~~d~~~~~~-~~~~~~t~ 301 (332)
T 3i53_A 230 DPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HA------GTGMDLRMLTY-FGGKERSL 301 (332)
T ss_dssp SCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----C------CHHHHHHHHHH-HSCCCCCH
T ss_pred CCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-Cc------cHHHHHHHHhh-CCCCCCCH
Confidence 87774 599999999999999989999999999999999999999987664 11 13566767665 48999999
Q ss_pred HHHHHHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 334 QEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 334 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
++|.++|+++||+++++++.++ .++||+++
T Consensus 302 ~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 302 AELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 9999999999999999999888 99999987
No 9
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=6.7e-47 Score=353.91 Aligned_cols=322 Identities=24% Similarity=0.383 Sum_probs=282.7
Q ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccccc
Q 017777 16 SDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSL 95 (366)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 95 (366)
+++.+...+++++.+++.+++|++++++|||+.|.+ +|.|++|||+++++ +++.++|||++|++.|++++.
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~----~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~- 74 (334)
T 2ip2_A 4 SNLAAARNLIQVVTGEWKSRCVYVATRLGLADLIES----GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGD- 74 (334)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEec-
Confidence 444677889999999999999999999999999986 59999999999999 999999999999999999963
Q ss_pred ccCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHH
Q 017777 96 RNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNK 175 (366)
Q Consensus 96 ~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 175 (366)
+ ++.|++|+.++.++ + ++.++++++.+...+.. ..|.+|.+.++++.++|+..+|.++|+++.++++...
T Consensus 75 ---~----~~~y~~t~~s~~l~-~-~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 144 (334)
T 2ip2_A 75 ---T----RDGYANTPTSHLLR-D-VEGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGR 144 (334)
T ss_dssp ---T----TTEEEECHHHHTTS-S-STTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHH
T ss_pred ---C----CCeEecCHHHHHHh-C-CCccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHH
Confidence 1 47999999999777 3 44678888888766555 8999999999999999998899899999999999999
Q ss_pred HHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceE
Q 017777 176 IFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEH 248 (366)
Q Consensus 176 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~ 248 (366)
.|...| .......+.+++.++ +.+ .+|||||||+|..+..+++.+|+.+++++|++.+++.+++. +++++
T Consensus 145 ~f~~~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~ 221 (334)
T 2ip2_A 145 RFLLAM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSL 221 (334)
T ss_dssp HHHHHH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEE
T ss_pred HHHHHH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEE
Confidence 999999 887777788888887 777 99999999999999999999999999999998887776542 58999
Q ss_pred EEccCCCCCCCC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC
Q 017777 249 VGGDMFVSVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG 327 (366)
Q Consensus 249 ~~~D~~~~~~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
+.+|+++++|.. |+|++.+++|+|+++++..+|++++++|+|||+++|.|...++.... .....+++.|+... +
T Consensus 222 ~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~-~ 296 (334)
T 2ip2_A 222 VGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPS----PMSVLWDVHLFMAC-A 296 (334)
T ss_dssp EESCTTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCC----HHHHHHHHHHHHHH-S
T ss_pred ecCCCCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhHHhhhHhHhhC-C
Confidence 999999877754 99999999999999999999999999999999999999887654321 23345666676553 7
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
++.++.++|.++|+++||+++++++.++..++|+++|
T Consensus 297 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 297 GRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp CCCCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred CcCCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 8899999999999999999999999888899999987
No 10
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=1.2e-46 Score=354.60 Aligned_cols=337 Identities=29% Similarity=0.489 Sum_probs=288.0
Q ss_pred CccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 15 GSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.+-.++...+++++.+++.+++|++++++|||+.|.+.+ +|.|++|||+++++ +|.+++.++|||++|++.|+|++.
T Consensus 11 ~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~ 87 (352)
T 1fp2_A 11 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEII 87 (352)
T ss_dssp THHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcC--CCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEe
Confidence 345577888999999999999999999999999999742 49999999999999 333478999999999999999963
Q ss_pred cccCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHh-cCCchhHhhhCCCchhhcccCchH
Q 017777 95 LRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVL-EGGIPFNKAYGMNAFDYHGKDLRF 173 (366)
Q Consensus 95 ~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~~~~~~g~~~~~~~~~~~~~ 173 (366)
.+| ++.|++|+.++.|+.+. +.++++++.+...+.++..|.+|.+.++ +|.++|+..+|.++|+++.++|+.
T Consensus 88 ----~~~--~~~y~~t~~s~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~ 160 (352)
T 1fp2_A 88 ----TKE--EESYALTVASELLVRGS-DLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEY 160 (352)
T ss_dssp ----ESS--SEEEEECHHHHTTSTTS-SSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHH
T ss_pred ----cCC--CCeEeCCHHHHHHhCCC-CccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHH
Confidence 112 48999999999877554 3678899888767777889999999999 888899999999999999999999
Q ss_pred HHHHHHHhhhcchhhHHHHHHhcc-CCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEcc
Q 017777 174 NKIFNNGMSSHSTITMKKILENYK-GFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGD 252 (366)
Q Consensus 174 ~~~~~~~m~~~~~~~~~~~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D 252 (366)
...|...|........+. ++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++++++.+|
T Consensus 161 ~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d 239 (352)
T 1fp2_A 161 NTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGD 239 (352)
T ss_dssp HHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECC
T ss_pred HHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEecc
Confidence 999999999887766666 66671 2677899999999999999999999999999999999999999887889999999
Q ss_pred CCCCCCCCCEEEeccccccCChHHHHHHHHHHHHhCCC---CcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCc
Q 017777 253 MFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPV---NGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGK 329 (366)
Q Consensus 253 ~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p---gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (366)
+++++|..|+|++.++||+|+++++..+|++++++||| ||+++|.|...++....+........+++.|+. . +++
T Consensus 240 ~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~ 317 (352)
T 1fp2_A 240 MFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGK 317 (352)
T ss_dssp TTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCC
T ss_pred ccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCC
Confidence 98877777999999999999999989999999999999 999999999876643321111233456666665 3 588
Q ss_pred cCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 330 ERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 330 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
.++.++|.++|+++||+++++++..+..++||++|
T Consensus 318 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 318 ERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp CEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 89999999999999999999998878889999986
No 11
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=1.2e-44 Score=343.74 Aligned_cols=330 Identities=23% Similarity=0.328 Sum_probs=280.5
Q ss_pred CCCccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccc
Q 017777 13 AQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLN 92 (366)
Q Consensus 13 ~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 92 (366)
.+...++.+..+++++.+++.+++|++++++|||+.|.. +|.|++|||+++++ +++.++|||++|++.|+++
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~ 80 (374)
T 1qzz_A 9 PLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLE 80 (374)
T ss_dssp -CCCCHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEE
Confidence 334467889999999999999999999999999999975 59999999999999 9999999999999999999
Q ss_pred cccccCCCCcccc--ccccchhchhhhcCCCCCChhHHHHhhcChhHH-HhhhhhHHHHhcCCchhHhhhCCCchhhccc
Q 017777 93 CSLRNLPDGKVER--LYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLM-ESWYYLKDAVLEGGIPFNKAYGMNAFDYHGK 169 (366)
Q Consensus 93 ~~~~~~~~g~~~~--~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~ 169 (366)
+. + ++ .|++|+.+..+..+. +.++++++.+...+..+ ..|.+|.+.++++.+++...+|.++|+++.+
T Consensus 81 ~~----~----~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~ 151 (374)
T 1qzz_A 81 GG----E----KQGRPLRPTRLGMLLADGH-PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSA 151 (374)
T ss_dssp CC----C----C-CCCCEECTTGGGGSTTC-TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHH
T ss_pred Ee----C----CCCeEEEEChHHHhhcCCC-cccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhh
Confidence 63 2 45 899999998777554 46788888776544455 7999999999999999999999899999999
Q ss_pred CchHHHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC------
Q 017777 170 DLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF------ 243 (366)
Q Consensus 170 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------ 243 (366)
+++....|...|........+.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++.
T Consensus 152 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~ 230 (374)
T 1qzz_A 152 DVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGL 230 (374)
T ss_dssp CHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCC
Confidence 9999999999998877777778888887 778899999999999999999999999999999998888776542
Q ss_pred -CCceEEEccCCCCCCCC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc--ccCCCCCCchhhhhhhhcch
Q 017777 244 -PGVEHVGGDMFVSVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES--ILPVTPDTSLASKVVIHVDC 319 (366)
Q Consensus 244 -~~v~~~~~D~~~~~~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~--~~~~~~~~~~~~~~~~~~~~ 319 (366)
++++++.+|+++++|.. |+|++.+++|+|+++++..+|++++++|+|||+++|.|. ..++... ......+++
T Consensus 231 ~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~ 306 (374)
T 1qzz_A 231 ADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD----RFFSTLLDL 306 (374)
T ss_dssp TTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-----------HHHHHHHHH
T ss_pred CCceEEEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC----cchhhhcch
Confidence 48999999998877764 999999999999999888999999999999999999998 6654321 122345566
Q ss_pred hhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCce-----eEEEEEec
Q 017777 320 IMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNT-----YIMEFLKS 365 (366)
Q Consensus 320 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-----~vie~~k~ 365 (366)
.|+... +++.++.++|.++|+++||+++++...++.. ++|+++|.
T Consensus 307 ~~~~~~-~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 307 RMLTFM-GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTAV 356 (374)
T ss_dssp HHHHHH-SCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEEC
T ss_pred HHHHhC-CCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEEC
Confidence 666543 7889999999999999999999999887777 99999986
No 12
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=8.7e-45 Score=343.11 Aligned_cols=330 Identities=16% Similarity=0.178 Sum_probs=264.5
Q ss_pred CCCCccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccc
Q 017777 12 PAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVL 91 (366)
Q Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l 91 (366)
+.+.+-.++...+++++.+++.+++|++++++|||+.|.+.+ +|+|++|||+++++ +++.++|||++|++.|+|
T Consensus 7 ~~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~--~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l 80 (363)
T 3dp7_A 7 KEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKR--EGYTLQEISGRTGL----TRYAAQVLLEASLTIGTI 80 (363)
T ss_dssp CSCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCT--TCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSE
T ss_pred cCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcC--CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCe
Confidence 344556678889999999999999999999999999999832 59999999999999 999999999999999999
Q ss_pred ccccccCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhC--CCchhhccc
Q 017777 92 NCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYG--MNAFDYHGK 169 (366)
Q Consensus 92 ~~~~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g--~~~~~~~~~ 169 (366)
+++ +++|++|+.++.|+.+.. ...++.+. .+..+++|.+|.+++++|.+++...+| .++|+++.+
T Consensus 81 ~~~---------~~~y~~t~~s~~L~~~~~---~~~~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~ 147 (363)
T 3dp7_A 81 LLE---------EDRYVLAKAGWFLLNDKM---ARVNMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQ 147 (363)
T ss_dssp EEE---------TTEEEECHHHHHHHHCHH---HHHHHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGG
T ss_pred Eec---------CCEEecccchHHhhCCCc---ccchheee-cHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhh
Confidence 863 589999999988876542 22233332 345678999999999999988888888 688999999
Q ss_pred CchHHH----HHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC--
Q 017777 170 DLRFNK----IFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-- 243 (366)
Q Consensus 170 ~~~~~~----~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-- 243 (366)
+|+... .|+..|..... ..++..+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.+++.
T Consensus 148 ~~~~~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 223 (363)
T 3dp7_A 148 LPEQVQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTA 223 (363)
T ss_dssp SCHHHHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHH
Confidence 998665 36666655432 22333333 356789999999999999999999999999999998888877642
Q ss_pred -----CCceEEEccCCCC---CCC-CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchh-hhh
Q 017777 244 -----PGVEHVGGDMFVS---VPK-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLA-SKV 313 (366)
Q Consensus 244 -----~~v~~~~~D~~~~---~~~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~-~~~ 313 (366)
++++++.+|++++ +|. .|+|++.++||+|+++++..+|++++++|+|||+|+|.|.+.++....... ...
T Consensus 224 ~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~ 303 (363)
T 3dp7_A 224 GLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLT 303 (363)
T ss_dssp TCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHH
T ss_pred hcCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHH
Confidence 4799999999984 664 499999999999999999999999999999999999999887664322110 011
Q ss_pred hhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECC-CceeEEEEEec
Q 017777 314 VIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSA-FNTYIMEFLKS 365 (366)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~k~ 365 (366)
....++.++.. .+++.+|.++|.++|+++||+++++++.. .+.++|+++|.
T Consensus 304 ~~~~~~~~~~~-~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~~ 355 (363)
T 3dp7_A 304 QISLYFTAMAN-GNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRLK 355 (363)
T ss_dssp HHHHHHHHSSC-SSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEEC
T ss_pred HhhhhHHhhhC-CCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEeec
Confidence 12223333322 36788999999999999999999988764 56899999986
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=2.9e-44 Score=339.45 Aligned_cols=327 Identities=22% Similarity=0.346 Sum_probs=279.2
Q ss_pred cHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccc
Q 017777 17 DEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLR 96 (366)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 96 (366)
.+....++++++.+++.+++|.+++++|||+.|.. +|.|++|||+++++ +++.++|+|++|++.|+|++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~-- 85 (360)
T 1tw3_A 16 QQIDALRTLIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED-- 85 (360)
T ss_dssp -CHHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--
T ss_pred cccchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEec--
Confidence 34667888999999999999999999999999976 59999999999999 999999999999999999863
Q ss_pred cCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChh-HHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHH
Q 017777 97 NLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKV-LMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNK 175 (366)
Q Consensus 97 ~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 175 (366)
+ +++|++|+.+..+..+. +.+++.++.+...+. .+..|.+|.+.+++|.++++..+|..+|+++..+++...
T Consensus 86 --~----~g~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~ 158 (360)
T 1tw3_A 86 --A----PGEFVPTEVGELLADDH-PAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRA 158 (360)
T ss_dssp --E----TTEEEECTTGGGGSTTS-TTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHH
T ss_pred --C----CCeEEeCHHHHHHhcCC-chhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHH
Confidence 1 57899999988777553 467888877654333 457899999999999999998899899999989999999
Q ss_pred HHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceE
Q 017777 176 IFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEH 248 (366)
Q Consensus 176 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~ 248 (366)
.|...|........+.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++. +++++
T Consensus 159 ~f~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~ 237 (360)
T 1tw3_A 159 SFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDV 237 (360)
T ss_dssp HHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEE
T ss_pred HHHHHHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEE
Confidence 9999999887777778888887 778899999999999999999999999999999988887766542 48999
Q ss_pred EEccCCCCCCCC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc-cCCCCCCchhhhhhhhcchhhHhhCC
Q 017777 249 VGGDMFVSVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI-LPVTPDTSLASKVVIHVDCIMLAHNP 326 (366)
Q Consensus 249 ~~~D~~~~~~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (366)
+.+|+++++|.. |+|++.+++|+|+++++..+|++++++|+|||+++|.|.. .++.... .....+++.|+...
T Consensus 238 ~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~- 312 (360)
T 1tw3_A 238 VEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN----EQFTELDLRMLVFL- 312 (360)
T ss_dssp EECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHH-
T ss_pred EeCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCc----chhhhccHHHhhhc-
Confidence 999998877764 9999999999999998889999999999999999999987 5443211 12335566665543
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEEECCCc-----eeEEEEEecC
Q 017777 327 GGKERTEQEFRALAKAAGFQGFQVVSSAFN-----TYIMEFLKSA 366 (366)
Q Consensus 327 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-----~~vie~~k~~ 366 (366)
++..++.++|.++|+++||+++++.+.++. .++|+++|.+
T Consensus 313 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~~ 357 (360)
T 1tw3_A 313 GGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAPAA 357 (360)
T ss_dssp SCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEEC-
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEeCC
Confidence 788999999999999999999999887665 8999999864
No 14
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=4e-43 Score=328.28 Aligned_cols=317 Identities=19% Similarity=0.210 Sum_probs=271.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCC
Q 017777 22 LLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDG 101 (366)
Q Consensus 22 ~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g 101 (366)
..+++++.+++.+++|++++++|||+.|.+ +|.|++|||+++++ +++.++|||++|++.|+|++.
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~~------- 72 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ----GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTKQ------- 72 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT----SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEec-------
Confidence 578999999999999999999999999997 49999999999999 999999999999999999863
Q ss_pred ccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHHHHHHHh
Q 017777 102 KVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGM 181 (366)
Q Consensus 102 ~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 181 (366)
+++|++|+.+..++...++.++++++.+...+..+..|.+|.+.++++.++++ . |+++.++++....|...|
T Consensus 73 --~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~ 144 (335)
T 2r3s_A 73 --AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAM 144 (335)
T ss_dssp --TTEEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHS
T ss_pred --CCEEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHH
Confidence 58999999995444344446788888887665678899999999999887654 3 778888899999999999
Q ss_pred hhcchhhHHHHHHhccCC--CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceEEEcc
Q 017777 182 SSHSTITMKKILENYKGF--EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGD 252 (366)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~--~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D 252 (366)
..........+++.++ + .+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++. ++++++.+|
T Consensus 145 ~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d 223 (335)
T 2r3s_A 145 SPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGS 223 (335)
T ss_dssp GGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred HHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecc
Confidence 9888777778888887 6 77899999999999999999999999999999988777776642 479999999
Q ss_pred CCC-CCCCC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCcc
Q 017777 253 MFV-SVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKE 330 (366)
Q Consensus 253 ~~~-~~~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (366)
+++ +.+.. |+|++.+++|+|+++++..+|++++++|+|||+++|.|...++....+ .....+++.|+...++++.
T Consensus 224 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 300 (335)
T 2r3s_A 224 AFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDA 300 (335)
T ss_dssp TTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCC
T ss_pred cccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCc
Confidence 987 66664 999999999999999999999999999999999999998876543222 2234566666665447889
Q ss_pred CCHHHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 331 RTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 331 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
++.++|.++|+++||+.+++.+..+..++++++++
T Consensus 301 ~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~~~ 335 (335)
T 2r3s_A 301 YTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVAYK 335 (335)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEEEC
T ss_pred CCHHHHHHHHHHCCCCeeeEEECCCCceeEEEecC
Confidence 99999999999999999999998888888888764
No 15
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=1.3e-42 Score=328.02 Aligned_cols=312 Identities=15% Similarity=0.254 Sum_probs=263.0
Q ss_pred HHHHHHHHHHHh-hhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccc
Q 017777 18 EEANLLAMQLTS-ASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLR 96 (366)
Q Consensus 18 ~~~~~~l~~~~~-~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 96 (366)
.+...++++++. +++.+++|++++++|||+.|.+ +|.|++|||+++++ +++.++|||++|++.|+|++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~----~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~-- 97 (359)
T 1x19_A 28 LNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE-- 97 (359)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC----CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEee--
Confidence 567778888886 8999999999999999999987 59999999999999 999999999999999999973
Q ss_pred cCCCCccccccccchhchhhhcCCCC---CChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCch-
Q 017777 97 NLPDGKVERLYGLAPVCKFLTKNEDG---VTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLR- 172 (366)
Q Consensus 97 ~~~~g~~~~~y~~t~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~- 172 (366)
++.|++|+.+..++.+.++ .++++++.+. ....++.|.+|.+.++++.+ |+++.++|+
T Consensus 98 -------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p~~ 159 (359)
T 1x19_A 98 -------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYPPV 159 (359)
T ss_dssp -------TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSSCC
T ss_pred -------CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCchh
Confidence 4799999986655555555 6788888775 45677899999999998754 566777888
Q ss_pred --HHHHHHHHhhhcch-hhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC-------
Q 017777 173 --FNKIFNNGMSSHST-ITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA------- 242 (366)
Q Consensus 173 --~~~~~~~~m~~~~~-~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------- 242 (366)
....|...|..... ...+.+++.++ +.+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++
T Consensus 160 ~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~ 238 (359)
T 1x19_A 160 TREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV 238 (359)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCC
Confidence 88999999998887 77788888887 88889999999999999999999999999999999888877753
Q ss_pred CCCceEEEccCCC-CCCCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhh
Q 017777 243 FPGVEHVGGDMFV-SVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIM 321 (366)
Q Consensus 243 ~~~v~~~~~D~~~-~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~ 321 (366)
.++++++.+|+++ +.+.+|+|++.+++|+|+++++..+|++++++|+|||+++|.|...++. ..+.. ...+ .|
T Consensus 239 ~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~~---~~~~--~~ 312 (359)
T 1x19_A 239 ADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP-ENPNF---DYLS--HY 312 (359)
T ss_dssp TTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT-TSCCH---HHHH--HH
T ss_pred CCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC-CCchH---HHHH--HH
Confidence 2469999999998 6666699999999999999889999999999999999999999887654 22111 1112 22
Q ss_pred HhhCCCCcc----CCHHHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 322 LAHNPGGKE----RTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 322 ~~~~~~~~~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
+....+++. ++.++|.++|+++||+++++.+.+ ..++++++|+
T Consensus 313 ~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~kp 359 (359)
T 1x19_A 313 ILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVKP 359 (359)
T ss_dssp GGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEECC
T ss_pred HHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeCC
Confidence 222234666 899999999999999999998887 8899999984
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=8.9e-43 Score=328.25 Aligned_cols=327 Identities=14% Similarity=0.180 Sum_probs=267.3
Q ss_pred ccccCCC-CCccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHH
Q 017777 7 ETQISPA-QGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLL 85 (366)
Q Consensus 7 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L 85 (366)
+|+.++. .....+....+++++.+++.+++|++++++|||+.|.+ |.|++|||+++++ +++.++|||++|
T Consensus 10 ~~~~~~~~~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~-----~~t~~elA~~~~~----~~~~l~rlLr~L 80 (352)
T 3mcz_A 10 ETIYESTEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT-----GRTPAEVAASFGM----VEGKAAILLHAL 80 (352)
T ss_dssp -CTTSCCCSCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS-----CBCHHHHHHHHTC----CHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC-----CCCHHHHHHHhCc----ChHHHHHHHHHH
Confidence 4555433 33445556669999999999999999999999999964 8999999999999 999999999999
Q ss_pred hcccccccccccCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCch-hHhhhCCCch
Q 017777 86 ASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIP-FNKAYGMNAF 164 (366)
Q Consensus 86 ~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~-~~~~~g~~~~ 164 (366)
++.|++++. +++|.+|+.+..++.+.++.+++.++.+. ...++.|.+|.+.+++|.+. |+..
T Consensus 81 ~~~gll~~~---------~~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------ 143 (352)
T 3mcz_A 81 AALGLLTKE---------GDAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------ 143 (352)
T ss_dssp HHTTSEEEE---------TTEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------
T ss_pred HHCCCeEec---------CCeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------
Confidence 999999973 47899999999777666667888877654 33567999999999998653 2221
Q ss_pred hhcccCchHHHHHHHHhhhcchhhHHHHHHhccCCCC-CCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC
Q 017777 165 DYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEG-LNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF 243 (366)
Q Consensus 165 ~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~-~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~ 243 (366)
.++..+++....|..+|...... +..+++.++ +.+ ..+|||||||+|.++..+++.+|+++++++|+|.+++.+++.
T Consensus 144 ~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~ 221 (352)
T 3mcz_A 144 SRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKT 221 (352)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHH
Confidence 23457888899999999873332 336778887 666 899999999999999999999999999999998887766542
Q ss_pred -------CCceEEEccCCC-C--CCCC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhh
Q 017777 244 -------PGVEHVGGDMFV-S--VPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASK 312 (366)
Q Consensus 244 -------~~v~~~~~D~~~-~--~~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~ 312 (366)
++++++.+|+++ + .+.. |+|++.+++|+|+++++..+|++++++|+|||+|+|.|.+.++....+ .
T Consensus 222 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~ 298 (352)
T 3mcz_A 222 IHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTP---A 298 (352)
T ss_dssp HHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSS---H
T ss_pred HHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCC---c
Confidence 479999999998 4 5554 999999999999999999999999999999999999999887654332 2
Q ss_pred hhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEecC
Q 017777 313 VVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKSA 366 (366)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~~ 366 (366)
....+++.|+....+++.++.++|.++|+++||++++.. .+..++++++|.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~kp~ 350 (352)
T 3mcz_A 299 LSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQRSS 350 (352)
T ss_dssp HHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEECCC
T ss_pred hHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEecCC
Confidence 334667777665457899999999999999999998844 3568899998863
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.87 E-value=1.2e-21 Score=175.82 Aligned_cols=165 Identities=16% Similarity=0.183 Sum_probs=124.2
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC--CCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCCCCEEEecc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY--PSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPKGDAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~D~i~~~~ 267 (366)
..++.+|||||||+|..+..+++.+ |+++++++|+ +.+++.|+++ .+|+++++|+.+ +++..|+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4567899999999999999999985 6789999998 8888877642 579999999987 666669999999
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC--------------CCCccCCH
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN--------------PGGKERTE 333 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~t~ 333 (366)
+||++++++...+|++++++|||||++++.|.....+.... ........-+..... .....+|.
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~--~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~ 225 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG--ELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 225 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHH--HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCH
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCH
Confidence 99999988888999999999999999999998776542110 000000000000000 00134688
Q ss_pred HHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 334 QEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 334 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
+++.++|++|||+.++++-....+..+.++|.
T Consensus 226 ~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K~ 257 (261)
T 4gek_A 226 ETHKARLHKAGFEHSELWFQCFNFGSLVALKA 257 (261)
T ss_dssp HHHHHHHHHHTCSEEEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHcCCCeEEEEEEeccEEEEEEEEc
Confidence 99999999999999988655555666678875
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.82 E-value=3.3e-19 Score=157.34 Aligned_cols=175 Identities=17% Similarity=0.142 Sum_probs=129.3
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCCC-CE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPKG-DA 262 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~~-D~ 262 (366)
..+...+....+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++++|+.+ +.+.. |+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 44555554334678999999999999999999999999999998 777776653 2489999999987 55543 99
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhc------ch--h---h-HhhCCCCcc
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHV------DC--I---M-LAHNPGGKE 330 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~------~~--~---~-~~~~~~~~~ 330 (366)
|++..++|++++++...+|++++++|+|||++++.+...++........ ...+. .+ . . .........
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLN-KTIWRQYVENSGLTEEEIAAGYERSKLDKD 191 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHH-HHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHH-HHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence 9999999999988878899999999999999999998765531110000 00000 00 0 0 000013445
Q ss_pred CCHHHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 331 RTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 331 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
++.++|.++|++|||+.++++.....++++-.+|+
T Consensus 192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~ 226 (234)
T 3dtn_A 192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKT 226 (234)
T ss_dssp CBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEECC
T ss_pred cCHHHHHHHHHHcCCCceeeeeeecceeEEEEEec
Confidence 78999999999999999998887777777776653
No 19
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.78 E-value=3.8e-18 Score=149.02 Aligned_cols=170 Identities=16% Similarity=0.162 Sum_probs=122.1
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--CCceEEEccCCC-CCCC-CCEEEe
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--PGVEHVGGDMFV-SVPK-GDAIFI 265 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~~~-~D~i~~ 265 (366)
.++..+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+. .|+|++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 4454444 446789999999999999999986 678999998 7787777643 489999999987 5553 399999
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchh--hHhhCCCCccCCHHHHHHHHHHc
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCI--MLAHNPGGKERTEQEFRALAKAA 343 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~t~~e~~~ll~~a 343 (366)
.+++|++++++...+|++++++|||||++++.+...+................+. .... .....++.++|.++|+++
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~a 191 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDL-QTEYYTRIPVMQTIFENN 191 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHH-HHSCCCBHHHHHHHHHHT
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhc-chhhcCCHHHHHHHHHHC
Confidence 9999999998877799999999999999999986554321000000000000000 0000 012335889999999999
Q ss_pred CCceeEEEECCCceeEEEEEec
Q 017777 344 GFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 344 Gf~~~~~~~~~~~~~vie~~k~ 365 (366)
||+++.... ....|++++.|+
T Consensus 192 Gf~v~~~~~-~~~~w~~~~~~~ 212 (220)
T 3hnr_A 192 GFHVTFTRL-NHFVWVMEATKQ 212 (220)
T ss_dssp TEEEEEEEC-SSSEEEEEEEEC
T ss_pred CCEEEEeec-cceEEEEeehhh
Confidence 998766554 588899998875
No 20
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.77 E-value=4.3e-19 Score=154.54 Aligned_cols=169 Identities=14% Similarity=0.228 Sum_probs=119.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~ 259 (366)
...++..++ ..+. +|||||||+|.++..+++. ++.+++++|+ +.+++.+++. ++++++++|+.+ +++.
T Consensus 33 ~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 33 AENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 344555554 4444 9999999999999999998 8889999998 7787766542 479999999987 6664
Q ss_pred C--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH
Q 017777 260 G--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR 337 (366)
Q Consensus 260 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 337 (366)
. |+|++.+++|++++. ..+|++++++|+|||++++.+...+.................+..........++.++|.
T Consensus 110 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDV--ATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQ 187 (219)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHH
T ss_pred ccccEEEECchHhhccCH--HHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHH
Confidence 3 999999999999665 478999999999999999987554321000000000000000000000123345789999
Q ss_pred HHHHHcCCceeEEEECCCceeEEEE
Q 017777 338 ALAKAAGFQGFQVVSSAFNTYIMEF 362 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~~~~~~~vie~ 362 (366)
++|+++||+.+++.....+.|++..
T Consensus 188 ~~l~~aGf~~v~~~~~~~~~~~~~~ 212 (219)
T 3dlc_A 188 NVLDEIGISSYEIILGDEGFWIIIS 212 (219)
T ss_dssp HHHHHHTCSSEEEEEETTEEEEEEB
T ss_pred HHHHHcCCCeEEEEecCCceEEEEe
Confidence 9999999999999988777776443
No 21
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.76 E-value=3.3e-18 Score=149.30 Aligned_cols=157 Identities=19% Similarity=0.204 Sum_probs=126.6
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~ 259 (366)
...++..+. ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 26 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 26 PEKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 345666665 6778899999999999999999997 7889999998 8887776542 579999999987 5554
Q ss_pred C--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH
Q 017777 260 G--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR 337 (366)
Q Consensus 260 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 337 (366)
. |+|++..++|++++. ..+|++++++|+|||++++.+.......... .....++.++|.
T Consensus 105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 165 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVG 165 (219)
T ss_dssp SCEEEEEEESCGGGCSSH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHH
T ss_pred CCeeEEEeehhhhhcCCH--HHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHH
Confidence 3 999999999999765 5889999999999999999987654431110 012235799999
Q ss_pred HHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 338 ALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
++++++||+++++.........+.++|.
T Consensus 166 ~~l~~~Gf~~~~~~~~~~~~~~~~~~k~ 193 (219)
T 3dh0_A 166 LILEDAGIRVGRVVEVGKYCFGVYAMIV 193 (219)
T ss_dssp HHHHHTTCEEEEEEEETTTEEEEEEECC
T ss_pred HHHHHCCCEEEEEEeeCCceEEEEEEec
Confidence 9999999999999888888888888775
No 22
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.74 E-value=3.4e-17 Score=142.49 Aligned_cols=158 Identities=16% Similarity=0.102 Sum_probs=112.3
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--CCceEEEccCCCCCCCC--CEEE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--PGVEHVGGDMFVSVPKG--DAIF 264 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~~~~~~--D~i~ 264 (366)
..+...+....+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+..+.. |+|+
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 345555543556679999999999999999998 568999998 8888777653 67999999998754433 9999
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC-------CccCCHHHHH
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG-------GKERTEQEFR 337 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~t~~e~~ 337 (366)
+.+++|++++++...+|++++++|+|||++++.+...+.......... ......... .+. ...++.++|.
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 189 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAVRRT-LQDGRSFRIVKVFRSPAELT 189 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEEE-CTTSCEEEEECCCCCHHHHH
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--ccccceeee-cCCcchhhHhhcCCCHHHHH
Confidence 999999999987889999999999999999999876533211000000 000000000 011 1235899999
Q ss_pred HHHHHcCCceeEEEE
Q 017777 338 ALAKAAGFQGFQVVS 352 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~ 352 (366)
++|+++||++.....
T Consensus 190 ~~l~~aGf~v~~~~~ 204 (218)
T 3ou2_A 190 ERLTALGWSCSVDEV 204 (218)
T ss_dssp HHHHHTTEEEEEEEE
T ss_pred HHHHHCCCEEEeeec
Confidence 999999999554443
No 23
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.74 E-value=7.7e-18 Score=151.33 Aligned_cols=165 Identities=16% Similarity=0.139 Sum_probs=120.1
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-CCCceEEEccCCC-CCCCC-CEEEecc-ccccCCh
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-FPGVEHVGGDMFV-SVPKG-DAIFIKW-ICHDWSD 274 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~-~~~~~-D~i~~~~-~lh~~~~ 274 (366)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++++|+.+ +.+.. |+|++.. ++|++++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 356899999999999999999874 47899998 888887765 3689999999987 55444 9999998 9999865
Q ss_pred -HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhh--------------------hhhhhcchhhHhhCCC------
Q 017777 275 -EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLAS--------------------KVVIHVDCIMLAHNPG------ 327 (366)
Q Consensus 275 -~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~------ 327 (366)
++...+|++++++|+|||++++.+...++.-...... .....+++.+.....+
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH 206 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence 4667999999999999999999754333321000000 0000011111100001
Q ss_pred -----CccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEecC
Q 017777 328 -----GKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKSA 366 (366)
Q Consensus 328 -----~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~~ 366 (366)
.+.+|.++|.++|+++||+++++.......+++.++|.|
T Consensus 207 ~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~a 250 (263)
T 3pfg_A 207 EESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPGA 250 (263)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEECC
T ss_pred EEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecCC
Confidence 234689999999999999999988877888889999976
No 24
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.73 E-value=3.4e-18 Score=149.91 Aligned_cols=170 Identities=15% Similarity=0.094 Sum_probs=118.3
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC-
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG- 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~- 260 (366)
.+.+.+.++ ...+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+++++++|+.+ +++..
T Consensus 29 ~~~l~~~~~---~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 103 (227)
T 1ve3_A 29 EPLLMKYMK---KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKT 103 (227)
T ss_dssp HHHHHHSCC---SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTC
T ss_pred HHHHHHhcC---CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCc
Confidence 334444333 468999999999999999999876 8999998 8887776542 689999999987 55543
Q ss_pred -CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCC--C----------
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNP--G---------- 327 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------- 327 (366)
|+|++..++|++..++...+|++++++|+|||++++.+...+...... ..........++....+ .
T Consensus 104 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (227)
T 1ve3_A 104 FDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRL-KESLVVGQKYWISKVIPDQEERTVVIEFKS 182 (227)
T ss_dssp EEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGC-CC---------CCEEEEETTTTEEEEEC--
T ss_pred EEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHH-HhhhhcccceeecccccCccccEEEEEecc
Confidence 999999998777777778999999999999999999876422110000 00000000000000000 0
Q ss_pred --------CccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 328 --------GKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 328 --------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
...++ .+|.++|+++||+.+++...+...++|+++|+
T Consensus 183 ~~~~~~~~~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~~ 227 (227)
T 1ve3_A 183 EQDSFRVRFNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNPK 227 (227)
T ss_dssp ---CCEEEEECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEEC
T ss_pred chhhheeehhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCCC
Confidence 11122 48999999999999999998777889999885
No 25
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.73 E-value=2.9e-17 Score=147.36 Aligned_cols=156 Identities=19% Similarity=0.282 Sum_probs=120.8
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----CCceEEEccCCC-CCCCC--
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----PGVEHVGGDMFV-SVPKG-- 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~-- 260 (366)
...+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++..
T Consensus 44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 345666665 6677899999999999999999987 679999998 7777766543 689999999987 66543
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|+|++.+++|++++++...+|++++++|+|||++++.+...+..... .. .+.-.... .+...++.++|.+++
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~~----~~~~~~~~--~~~~~~~~~~~~~~l 193 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENW--DD----EFKEYVKQ--RKYTLITVEEYADIL 193 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGC--CH----HHHHHHHH--HTCCCCCHHHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccc--hH----HHHHHHhc--CCCCCCCHHHHHHHH
Confidence 99999999999987888899999999999999999999866541100 00 11111111 134567899999999
Q ss_pred HHcCCceeEEEECC
Q 017777 341 KAAGFQGFQVVSSA 354 (366)
Q Consensus 341 ~~aGf~~~~~~~~~ 354 (366)
+++||+++++....
T Consensus 194 ~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 194 TACNFKNVVSKDLS 207 (266)
T ss_dssp HHTTCEEEEEEECH
T ss_pred HHcCCeEEEEEeCC
Confidence 99999999887653
No 26
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.73 E-value=1.8e-17 Score=148.61 Aligned_cols=155 Identities=19% Similarity=0.313 Sum_probs=116.4
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~ 259 (366)
.+..++..++ .....+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 25 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 25 DLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp CHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence 3556666666 66788999999999999999999875 8999998 8888776542 579999999987 6664
Q ss_pred C--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhh-HhhCCCCccCCHHHH
Q 017777 260 G--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIM-LAHNPGGKERTEQEF 336 (366)
Q Consensus 260 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~ 336 (366)
+ |+|++..++|++++.. .+|++++++|||||++++.+...+.. .... ..+.... .........++.++|
T Consensus 102 ~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 173 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVDNSAPEN---DAFD---VFYNYVEKERDYSHHRAWKKSDW 173 (260)
T ss_dssp TCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEBCSS---HHHH---HHHHHHHHHHCTTCCCCCBHHHH
T ss_pred CCEEEEEEhhhhHhcCCHH--HHHHHHHHHcCCCCEEEEEEcCCCCC---HHHH---HHHHHHHHhcCccccCCCCHHHH
Confidence 3 9999999999998764 88999999999999999998765543 1111 1111111 111113456789999
Q ss_pred HHHHHHcCCceeEEEEC
Q 017777 337 RALAKAAGFQGFQVVSS 353 (366)
Q Consensus 337 ~~ll~~aGf~~~~~~~~ 353 (366)
.++|+++||+++.+...
T Consensus 174 ~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 174 LKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHTCEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEEe
Confidence 99999999998776654
No 27
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.72 E-value=8.5e-17 Score=142.50 Aligned_cols=151 Identities=17% Similarity=0.293 Sum_probs=113.8
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC---CCCCC--CE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV---SVPKG--DA 262 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~~~~--D~ 262 (366)
...+...++.+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++.+ |+
T Consensus 29 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~ 104 (240)
T 3dli_A 29 KARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDG 104 (240)
T ss_dssp HHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSE
T ss_pred HHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeE
Confidence 3344444443456789999999999999999987 557899998 8888888754 8999998865 55543 99
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHH
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKA 342 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 342 (366)
|++.+++|++++++...+|++++++|||||++++........ ....+.. . .......++.++|.+++++
T Consensus 105 i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------~~~~~~~-~-~~~~~~~~~~~~l~~~l~~ 173 (240)
T 3dli_A 105 VMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL---------YSLINFY-I-DPTHKKPVHPETLKFILEY 173 (240)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH---------HHHHHHT-T-STTCCSCCCHHHHHHHHHH
T ss_pred EEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh---------HHHHHHh-c-CccccccCCHHHHHHHHHH
Confidence 999999999998878899999999999999999977642210 0111111 1 1123456789999999999
Q ss_pred cCCceeEEEECC
Q 017777 343 AGFQGFQVVSSA 354 (366)
Q Consensus 343 aGf~~~~~~~~~ 354 (366)
+||+++++....
T Consensus 174 aGf~~~~~~~~~ 185 (240)
T 3dli_A 174 LGFRDVKIEFFE 185 (240)
T ss_dssp HTCEEEEEEEEC
T ss_pred CCCeEEEEEEec
Confidence 999998876643
No 28
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.71 E-value=2.4e-17 Score=147.05 Aligned_cols=149 Identities=21% Similarity=0.344 Sum_probs=115.5
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----CCceEEEccCCC-CCCCC--C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----PGVEHVGGDMFV-SVPKG--D 261 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~--D 261 (366)
..++..+. ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. .+++++++|+.+ +++.. |
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 45566565 5567899999999999999998876 457999997 7777766542 579999999877 55543 9
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHH
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAK 341 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 341 (366)
+|++.+++|++++++...+|++++++|+|||++++.+........ ..+. ......++.++|.++|+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~~-----~~~~~~~~~~~~~~~l~ 226 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK-----EDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET-----TTTEEEBCHHHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---------eecc-----cCCcccCCHHHHHHHHH
Confidence 999999999999888889999999999999999999875433210 1110 01234578999999999
Q ss_pred HcCCceeEEEECC
Q 017777 342 AAGFQGFQVVSSA 354 (366)
Q Consensus 342 ~aGf~~~~~~~~~ 354 (366)
++||+++++....
T Consensus 227 ~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 227 ESGVRVVKEAFQE 239 (254)
T ss_dssp HHTCCEEEEEECT
T ss_pred HCCCEEEEeeecC
Confidence 9999999887653
No 29
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.70 E-value=1.8e-16 Score=144.23 Aligned_cols=162 Identities=17% Similarity=0.176 Sum_probs=118.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~ 259 (366)
...+++.++ ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++++.+|+.+ + ..
T Consensus 53 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~ 129 (287)
T 1kpg_A 53 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-EP 129 (287)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-CC
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-CC
Confidence 345666665 66778999999999999999997765 49999998 7777766532 579999999865 3 33
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCC----Cchh-hhhhhhcchhhHhhCCCCccCCHH
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPD----TSLA-SKVVIHVDCIMLAHNPGGKERTEQ 334 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~t~~ 334 (366)
.|+|++..++|++++++...+|++++++|||||++++.+...+.... ..+. .......+.......+++..++.+
T Consensus 130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 209 (287)
T 1kpg_A 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIP 209 (287)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred eeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHH
Confidence 49999999999997666779999999999999999999876544210 0000 000011111111123567778999
Q ss_pred HHHHHHHHcCCceeEEEEC
Q 017777 335 EFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 335 e~~~ll~~aGf~~~~~~~~ 353 (366)
+|.++++++||+++++...
T Consensus 210 ~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 210 MVQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHhCCcEEEEEEeC
Confidence 9999999999999988765
No 30
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.70 E-value=1.3e-16 Score=143.86 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=119.8
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~ 259 (366)
...+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 445666666 6778899999999999999999887 679999998 7777766532 479999999987 6664
Q ss_pred C--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH
Q 017777 260 G--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR 337 (366)
Q Consensus 260 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 337 (366)
+ |+|++..++|++++. ..+|++++++|+|||++++.+........... ....+...... +....++.++|.
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~ 200 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEGAK----KEAVDAFRAGG-GVLSLGGIDEYE 200 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCHHH----HHHHHHHHHHH-TCCCCCCHHHHH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCChhH----HHHHHHHHhhc-CccCCCCHHHHH
Confidence 3 999999999999776 48899999999999999999986644211110 01111111111 356678999999
Q ss_pred HHHHHcCCceeEEEECC
Q 017777 338 ALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~~~ 354 (366)
++++++||+++++...+
T Consensus 201 ~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 201 SDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHTTCEEEEEEECH
T ss_pred HHHHHcCCeEEEEEECc
Confidence 99999999998887753
No 31
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.70 E-value=1.6e-16 Score=140.66 Aligned_cols=154 Identities=18% Similarity=0.283 Sum_probs=115.6
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~ 260 (366)
...++..+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +++..
T Consensus 10 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 10 LGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred cchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence 344556565 77889999999999999999998765 7899997 7787766542 579999999977 66543
Q ss_pred --CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchh-hHhhCCCCccCCHHHHH
Q 017777 261 --DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCI-MLAHNPGGKERTEQEFR 337 (366)
Q Consensus 261 --D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~e~~ 337 (366)
|+|++.+++|++++. ..+|++++++|+|||++++.+...+.. .... ...... ..........++.++|.
T Consensus 87 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 158 (239)
T 1xxl_A 87 SFDIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPED---PVLD---EFVNHLNRLRDPSHVRESSLSEWQ 158 (239)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSS---HHHH---HHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred cEEEEEECCchhhccCH--HHHHHHHHHHcCCCcEEEEEEcCCCCC---hhHH---HHHHHHHHhccccccCCCCHHHHH
Confidence 999999999999865 478999999999999999998876543 1111 111111 11111234567899999
Q ss_pred HHHHHcCCceeEEEEC
Q 017777 338 ALAKAAGFQGFQVVSS 353 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~~ 353 (366)
++|+++||+++++...
T Consensus 159 ~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 159 AMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHCCCcEEEEEee
Confidence 9999999998877654
No 32
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.69 E-value=7e-17 Score=148.38 Aligned_cols=168 Identities=15% Similarity=0.135 Sum_probs=120.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHH-HhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCCC-CEEEecc
Q 017777 199 FEGLNSVVDVGGGIGATLNMII-SKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPKG-DAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~ 267 (366)
+.+..+|||||||+|.++..++ ...|+.+++++|+ +.+++.+++. .+++++++|+.+ +++.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4567899999999999999986 6688999999998 8887766542 359999999987 55543 9999999
Q ss_pred ccccCChHH-HHHHHHHHHHhCCCCcEEEEEccccCCCCCCch--h-----hhhhhhcchhhHhhCCC--CccCCHHHHH
Q 017777 268 ICHDWSDEH-CVKFLKNCYEALPVNGKVIVAESILPVTPDTSL--A-----SKVVIHVDCIMLAHNPG--GKERTEQEFR 337 (366)
Q Consensus 268 ~lh~~~~~~-~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~--~~~~t~~e~~ 337 (366)
++|++++.+ ...+|++++++|+|||++++.+...+....... . ..........+...... ...++.+++.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR 275 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence 999996554 457999999999999999998876543321110 0 00000000001110001 1347999999
Q ss_pred HHHHHcCCceeEEEECC-CceeEEEEEecC
Q 017777 338 ALAKAAGFQGFQVVSSA-FNTYIMEFLKSA 366 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~~~-~~~~vie~~k~~ 366 (366)
++|+++||+++++.... .....+.++|+|
T Consensus 276 ~~l~~aGF~~v~~~~~~~~~~~~v~a~Kpa 305 (305)
T 3ocj_A 276 AQLEEAGFTDLRFEDDRARLFPTVIARKPA 305 (305)
T ss_dssp HHHHHTTCEEEEEECCTTSSSCEEEEECCC
T ss_pred HHHHHCCCEEEEEEcccCceeeEEEEecCC
Confidence 99999999999988764 445577788875
No 33
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.69 E-value=2.8e-16 Score=144.07 Aligned_cols=163 Identities=18% Similarity=0.249 Sum_probs=121.7
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC-
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK- 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~- 259 (366)
...++..+. ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++++.+|+.+. +.
T Consensus 61 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 137 (302)
T 3hem_A 61 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP 137 (302)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred HHHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence 445666665 67788999999999999999999877 79999998 8888776542 3799999998754 43
Q ss_pred CCEEEeccccccCCh-------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhh-----hhhhhcchhhHhhCCC
Q 017777 260 GDAIFIKWICHDWSD-------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLAS-----KVVIHVDCIMLAHNPG 327 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~-------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 327 (366)
.|+|++..++|++++ ++...+|++++++|||||++++.+...+......... ......++......++
T Consensus 138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (302)
T 3hem_A 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPG 217 (302)
T ss_dssp CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTT
T ss_pred ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCC
Confidence 399999999999944 5667999999999999999999988765421000000 0000012222222357
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEECC
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~~ 354 (366)
+..++.+++.++++++||+++++...+
T Consensus 218 ~~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 218 GRLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 788899999999999999999887764
No 34
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.69 E-value=2e-16 Score=144.54 Aligned_cols=154 Identities=14% Similarity=0.210 Sum_probs=116.5
Q ss_pred HHHHHHhc---cCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-C
Q 017777 189 MKKILENY---KGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-S 256 (366)
Q Consensus 189 ~~~~~~~~---~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~ 256 (366)
...++..+ ..+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +
T Consensus 67 ~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145 (297)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence 34555555 126678899999999999999999986 468999998 7777766542 579999999987 6
Q ss_pred CCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHH
Q 017777 257 VPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQ 334 (366)
Q Consensus 257 ~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 334 (366)
++.+ |+|++..++|++++. ..+|++++++|||||++++.+.......... . ...+.... . .....+.+
T Consensus 146 ~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~---~~~~~~~~-~-~~~~~~~~ 215 (297)
T 2o57_A 146 CEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKS---S---IQPILDRI-K-LHDMGSLG 215 (297)
T ss_dssp SCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGG---G---GHHHHHHH-T-CSSCCCHH
T ss_pred CCCCCEeEEEecchhhhcCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCchH---H---HHHHHHHh-c-CCCCCCHH
Confidence 6643 999999999999874 6889999999999999999998765432111 0 11111111 1 22346899
Q ss_pred HHHHHHHHcCCceeEEEEC
Q 017777 335 EFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 335 e~~~ll~~aGf~~~~~~~~ 353 (366)
+|.++|+++||+++++...
T Consensus 216 ~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 216 LYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp HHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHCCCeEEEEEEC
Confidence 9999999999999988765
No 35
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.69 E-value=1.1e-16 Score=141.44 Aligned_cols=164 Identities=18% Similarity=0.172 Sum_probs=117.4
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCC-CCCCC-CEEEe-ccccccCCh
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFV-SVPKG-DAIFI-KWICHDWSD 274 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~-D~i~~-~~~lh~~~~ 274 (366)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |+|++ ..++|++++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4568999999999999999999876 7899998 8888877653 689999999987 55444 99995 559988854
Q ss_pred -HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhh--------------------hhhhcchhhHhhCCCC-----
Q 017777 275 -EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASK--------------------VVIHVDCIMLAHNPGG----- 328 (366)
Q Consensus 275 -~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~----- 328 (366)
++...+|++++++|+|||++++.+...++......... ......+.+.....++
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 56789999999999999999998765443211000000 0000011111000011
Q ss_pred ------ccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 329 ------KERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 329 ------~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
+.+|.++|.++|+++||+++.+....+...+++++|+
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K~ 239 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVPA 239 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEecC
Confidence 3469999999999999987777666677889999885
No 36
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.69 E-value=7.3e-17 Score=139.04 Aligned_cols=146 Identities=14% Similarity=0.070 Sum_probs=114.0
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-CCCceEEEccCCC-CCCCC--CEEEeccccccCChHH
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-FPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEH 276 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~ 276 (366)
..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ +++.+ |+|++.+++|+++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 589999999999999999987 568999998 888887765 4789999999987 55533 9999999999998777
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECC-C
Q 017777 277 CVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSA-F 355 (366)
Q Consensus 277 ~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~ 355 (366)
...+|++++++|+|||++++.....+... .+. . . ......++.++|.++|+++||+++++...+ .
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~----------~~~--~-~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 185 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLE----------PMY--H-P-VATAYRWPLPELAQALETAGFQVTSSHWDPRF 185 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCE----------EEC--C-S-SSCEEECCHHHHHHHHHHTTEEEEEEEECTTS
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchh----------hhh--c-h-hhhhccCCHHHHHHHHHHCCCcEEEEEecCCC
Confidence 78999999999999999999886543310 000 0 0 012345689999999999999999887764 3
Q ss_pred ceeEEEEE
Q 017777 356 NTYIMEFL 363 (366)
Q Consensus 356 ~~~vie~~ 363 (366)
+...+...
T Consensus 186 p~~~l~~~ 193 (203)
T 3h2b_A 186 PHAYLTAE 193 (203)
T ss_dssp SEEEEEEE
T ss_pred cchhhhhh
Confidence 44444433
No 37
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.69 E-value=4.6e-17 Score=136.29 Aligned_cols=148 Identities=17% Similarity=0.170 Sum_probs=117.4
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-CCCceEEEccCCCCCCC--CCEEEecc
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-FPGVEHVGGDMFVSVPK--GDAIFIKW 267 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~~~~--~D~i~~~~ 267 (366)
+++.++ ..+..+|||||||+|.++..+++... +++++|+ +.+++.+++ .+++++..+| .+++. .|+|++..
T Consensus 9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFAN 83 (170)
T ss_dssp THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEES
T ss_pred HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEcc
Confidence 344444 56778999999999999999998874 8999998 777777765 4789999999 44443 39999999
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCce
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQG 347 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 347 (366)
++|++++. ..+|++++++|+|||++++.+.......... +....++.++|.++|+ ||++
T Consensus 84 ~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~--Gf~~ 142 (170)
T 3i9f_A 84 SFHDMDDK--QHVISEVKRILKDDGRVIIIDWRKENTGIGP-----------------PLSIRMDEKDYMGWFS--NFVV 142 (170)
T ss_dssp CSTTCSCH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSS-----------------CGGGCCCHHHHHHHTT--TEEE
T ss_pred chhcccCH--HHHHHHHHHhcCCCCEEEEEEcCccccccCc-----------------hHhhhcCHHHHHHHHh--CcEE
Confidence 99999765 4889999999999999999987655432111 0122368999999999 9999
Q ss_pred eEEEECCCceeEEEEEec
Q 017777 348 FQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 348 ~~~~~~~~~~~vie~~k~ 365 (366)
++..........+.++|+
T Consensus 143 ~~~~~~~~~~~~l~~~~~ 160 (170)
T 3i9f_A 143 EKRFNPTPYHFGLVLKRK 160 (170)
T ss_dssp EEEECSSTTEEEEEEEEC
T ss_pred EEccCCCCceEEEEEecC
Confidence 999998877888888765
No 38
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.68 E-value=3.9e-16 Score=143.85 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=116.9
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVP 258 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~ 258 (366)
....+++.++.+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++
T Consensus 104 ~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 182 (312)
T 3vc1_A 104 QAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFD 182 (312)
T ss_dssp HHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC
T ss_pred HHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCC
Confidence 344566665545677899999999999999999985 578999998 8888776542 479999999987 665
Q ss_pred CC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHH
Q 017777 259 KG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEF 336 (366)
Q Consensus 259 ~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 336 (366)
.+ |+|++..++|+++ ...+|+++.++|||||++++.+........... . ......... ....++.++|
T Consensus 183 ~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~----~~~~~~~~~--~~~~~s~~~~ 252 (312)
T 3vc1_A 183 KGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS-K----WVSQINAHF--ECNIHSRREY 252 (312)
T ss_dssp TTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC-H----HHHHHHHHH--TCCCCBHHHH
T ss_pred CCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh-H----HHHHHHhhh--cCCCCCHHHH
Confidence 43 9999999999985 568999999999999999999976655321110 0 111111111 1235789999
Q ss_pred HHHHHHcCCceeEEEEC
Q 017777 337 RALAKAAGFQGFQVVSS 353 (366)
Q Consensus 337 ~~ll~~aGf~~~~~~~~ 353 (366)
.++|+++||+++++...
T Consensus 253 ~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 253 LRAMADNRLVPHTIVDL 269 (312)
T ss_dssp HHHHHTTTEEEEEEEEC
T ss_pred HHHHHHCCCEEEEEEeC
Confidence 99999999999988775
No 39
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.68 E-value=1.6e-16 Score=137.87 Aligned_cols=138 Identities=16% Similarity=0.103 Sum_probs=108.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCC-CEEEeccccccCChH
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKG-DAIFIKWICHDWSDE 275 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~-D~i~~~~~lh~~~~~ 275 (366)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.. +.+.. |+|++.+++|+++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 345789999999999999999986 568999998 8888877765578889999876 52233 999999999999988
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcC-CceeEEEEC
Q 017777 276 HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAG-FQGFQVVSS 353 (366)
Q Consensus 276 ~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG-f~~~~~~~~ 353 (366)
+...+|++++++|+|||++++........... .. ......++.++|.++|+++| |+++++...
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--------~~-------~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRD--------KL-------ARYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEEC--------TT-------SCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCccccc--------cc-------chhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 88899999999999999999986543221000 00 01123468999999999999 999887654
No 40
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.68 E-value=2.2e-16 Score=141.03 Aligned_cols=153 Identities=13% Similarity=0.077 Sum_probs=115.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~ 259 (366)
...++..+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 445666665 6778899999999999999999987 668999998 8887776532 479999999987 4433
Q ss_pred C-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHH
Q 017777 260 G-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRA 338 (366)
Q Consensus 260 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 338 (366)
. |+|++..++|++++. ..+|++++++|||||++++.+........... ....... ......++.++|.+
T Consensus 103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~ 172 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATEE------IAQACGV--SSTSDFLTLPGLVG 172 (256)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH------HHHTTTC--SCGGGSCCHHHHHH
T ss_pred CCCEEEECCChHhcCCH--HHHHHHHHHHcCCCeEEEEecCcccCCCChHH------HHHHHhc--ccccccCCHHHHHH
Confidence 3 999999999998764 58899999999999999999876544322110 0000000 01224578999999
Q ss_pred HHHHcCCceeEEEEC
Q 017777 339 LAKAAGFQGFQVVSS 353 (366)
Q Consensus 339 ll~~aGf~~~~~~~~ 353 (366)
+|+++||+++++...
T Consensus 173 ~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 173 AFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHCCCeeEEEEeC
Confidence 999999999887654
No 41
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.68 E-value=4.3e-16 Score=135.90 Aligned_cols=159 Identities=14% Similarity=0.078 Sum_probs=112.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----------CCceEEEccCCC-CCC--CCCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----------PGVEHVGGDMFV-SVP--KGDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~~--~~D~i~ 264 (366)
.+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++. .+++++.+|+.. +.+ ..|+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 4568999999999999999999888889999998 8888777542 289999999865 433 239999
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH----HHH
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR----ALA 340 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~----~ll 340 (366)
+..++|++++++...+|++++++|+|||.+++........... ......... ......++.+++. +++
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~l~~~~~~l~ 179 (219)
T 3jwg_A 108 VIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYG-------NLFEGNLRH-RDHRFEWTRKEFQTWAVKVA 179 (219)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCC-------CT-----GG-GCCTTSBCHHHHHHHHHHHH
T ss_pred EHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhc-------ccCcccccc-cCceeeecHHHHHHHHHHHH
Confidence 9999999998888899999999999999666554321110000 000000000 1133446889999 889
Q ss_pred HHcCCceeEEEE------CCCceeEEEEEecC
Q 017777 341 KAAGFQGFQVVS------SAFNTYIMEFLKSA 366 (366)
Q Consensus 341 ~~aGf~~~~~~~------~~~~~~vie~~k~~ 366 (366)
+++||++.-.-. .+....+-.++|.|
T Consensus 180 ~~~Gf~v~~~~~g~~~~~~g~~~qi~~~~~~~ 211 (219)
T 3jwg_A 180 EKYGYSVRFLQIGEIDDEFGSPTQMGVFTLGA 211 (219)
T ss_dssp HHHTEEEEEEEESCCCTTSCCSEEEEEEEECC
T ss_pred HHCCcEEEEEecCCccccCCCCeEEEEEeccC
Confidence 999997644311 12455677777765
No 42
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.68 E-value=1.3e-16 Score=137.89 Aligned_cols=141 Identities=9% Similarity=0.064 Sum_probs=106.7
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------------------CCCceEEEc
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------------------FPGVEHVGG 251 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~ 251 (366)
.++..+. .....+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+++++++
T Consensus 13 ~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 13 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 3444454 566789999999999999999986 568999998 888877653 257999999
Q ss_pred cCCC-CCC---CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC
Q 017777 252 DMFV-SVP---KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG 327 (366)
Q Consensus 252 D~~~-~~~---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
|+.+ +.+ ..|+|++..++|++++++...++++++++|||||+++++....+... . ...
T Consensus 90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~----------~--------~~~ 151 (203)
T 1pjz_A 90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL----------L--------EGP 151 (203)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS----------S--------SSC
T ss_pred ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc----------c--------CCC
Confidence 9987 543 23999999999999988778899999999999999555543322110 0 001
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
....+.+++.+++++ ||+++.+...
T Consensus 152 ~~~~~~~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 152 PFSVPQTWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp CCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred CCCCCHHHHHHHhcC-CcEEEEeccc
Confidence 112578999999998 9998776654
No 43
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.68 E-value=4.3e-16 Score=143.90 Aligned_cols=163 Identities=17% Similarity=0.245 Sum_probs=119.4
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~ 260 (366)
...+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+.....
T Consensus 79 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 156 (318)
T 2fk8_A 79 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 156 (318)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence 445666665 6677899999999999999999886 569999998 7777766542 46999999986521234
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCC----chhh-hhhhhcchhhHhhCCCCccCCHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDT----SLAS-KVVIHVDCIMLAHNPGGKERTEQE 335 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~t~~e 335 (366)
|+|++..++|++++++...+|+++.++|+|||++++.+...+..... .+.. ......+.......+++..++.++
T Consensus 157 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 236 (318)
T 2fk8_A 157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEM 236 (318)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred CEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHH
Confidence 99999999999987777899999999999999999998876542100 0000 000011111111124677789999
Q ss_pred HHHHHHHcCCceeEEEEC
Q 017777 336 FRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 336 ~~~ll~~aGf~~~~~~~~ 353 (366)
+.++++++||+++++...
T Consensus 237 ~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 237 MVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHhCCCEEEEEEec
Confidence 999999999999887664
No 44
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.68 E-value=9.9e-17 Score=145.01 Aligned_cols=152 Identities=19% Similarity=0.300 Sum_probs=112.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCCC--CEEEeccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPKG--DAIFIKWI 268 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D~i~~~~~ 268 (366)
+.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56788999999999999999999999999999998 7777766542 579999999987 55543 99999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcch--hhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDC--IMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
+|++++.+ .+|++++++|+|||++++.+.........+........... ..... .++..++..++.++|+++||+
T Consensus 115 l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~aGf~ 191 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAY-MKGNSLVGRQIYPLLQESGFE 191 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHH-TTCCTTGGGGHHHHHHHTTCE
T ss_pred hhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHCCCC
Confidence 99998765 78999999999999999988543211000000001111111 11111 245667788999999999999
Q ss_pred eeEEEEC
Q 017777 347 GFQVVSS 353 (366)
Q Consensus 347 ~~~~~~~ 353 (366)
++++...
T Consensus 192 ~v~~~~~ 198 (276)
T 3mgg_A 192 KIRVEPR 198 (276)
T ss_dssp EEEEEEE
T ss_pred eEEEeeE
Confidence 9887654
No 45
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.67 E-value=8.1e-16 Score=138.04 Aligned_cols=152 Identities=12% Similarity=0.124 Sum_probs=114.3
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCC--CEEE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKG--DAIF 264 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~ 264 (366)
.+.+...++ ..+..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++..+++++.+|+.+ +++.. |+|+
T Consensus 23 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 23 VNAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 445666665 56789999999999999999998 7789999998 8899988877899999999987 66543 9999
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcC
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAG 344 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 344 (366)
+.+++|++++. ..+|++++++|| ||++++.+...+..... .. ...+...... .....++.+++. +|+++|
T Consensus 100 ~~~~l~~~~~~--~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~-~~---~~~~~~~~~~--~~~~~~~~~~~~-~l~~aG 169 (261)
T 3ege_A 100 SILAIHHFSHL--EKSFQEMQRIIR-DGTIVLLTFDIRLAQRI-WL---YDYFPFLWED--ALRFLPLDEQIN-LLQENT 169 (261)
T ss_dssp EESCGGGCSSH--HHHHHHHHHHBC-SSCEEEEEECGGGCCCC-GG---GGTCHHHHHH--HHTSCCHHHHHH-HHHHHH
T ss_pred EcchHhhccCH--HHHHHHHHHHhC-CcEEEEEEcCCchhHHH-HH---HHHHHHHhhh--hhhhCCCHHHHH-HHHHcC
Confidence 99999999765 488999999999 99999988754332111 00 0011100010 123345678898 999999
Q ss_pred CceeEEEEC
Q 017777 345 FQGFQVVSS 353 (366)
Q Consensus 345 f~~~~~~~~ 353 (366)
|+.+++...
T Consensus 170 F~~v~~~~~ 178 (261)
T 3ege_A 170 KRRVEAIPF 178 (261)
T ss_dssp CSEEEEEEC
T ss_pred CCceeEEEe
Confidence 998887665
No 46
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.67 E-value=2.3e-16 Score=140.99 Aligned_cols=153 Identities=15% Similarity=0.094 Sum_probs=115.6
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~ 259 (366)
...++..+..+.+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++. .+++++++|+.+ +++.
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 112 (257)
T 3f4k_A 34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQN 112 (257)
T ss_dssp HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCT
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCC
Confidence 3345555544566789999999999999999999986 9999998 7777766542 459999999977 6554
Q ss_pred C--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH
Q 017777 260 G--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR 337 (366)
Q Consensus 260 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 337 (366)
. |+|++..++|+++ ...+|++++++|+|||++++.+.......... .....+... ....++.++|.
T Consensus 113 ~~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~ 180 (257)
T 3f4k_A 113 EELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPA------EIEDFWMDA---YPEISVIPTCI 180 (257)
T ss_dssp TCEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCCBHHHHH
T ss_pred CCEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChH------HHHHHHHHh---CCCCCCHHHHH
Confidence 3 9999999999984 34789999999999999999997543322111 111222211 12356899999
Q ss_pred HHHHHcCCceeEEEECC
Q 017777 338 ALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~~~ 354 (366)
++|+++||+++++...+
T Consensus 181 ~~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 181 DKMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHHTTEEEEEEEECC
T ss_pred HHHHHCCCeEEEEEECC
Confidence 99999999999987765
No 47
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.67 E-value=9.5e-16 Score=135.61 Aligned_cols=142 Identities=18% Similarity=0.194 Sum_probs=108.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CCceEEEccCCC-CCCCC--CEEEeccccccC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PGVEHVGGDMFV-SVPKG--DAIFIKWICHDW 272 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~ 272 (366)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +++.. |+|++.+++|++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 45689999999999999999986 568999998 8888877654 689999999987 66543 999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
++. ..+|++++++|+|||++++.+......... . ........ ......++.+++.++++++||++++...
T Consensus 130 ~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---~----~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 130 EEP--LRALNEIKRVLKSDGYACIAILGPTAKPRE---N----SYPRLYGK-DVVCNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp SCH--HHHHHHHHHHEEEEEEEEEEEECTTCGGGG---G----GGGGGGTC-CCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cCH--HHHHHHHHHHhCCCeEEEEEEcCCcchhhh---h----hhhhhccc-cccccCCCHHHHHHHHHHcCCEEEEeec
Confidence 765 478999999999999999988644332110 0 01101100 1134457899999999999999988764
Q ss_pred C
Q 017777 353 S 353 (366)
Q Consensus 353 ~ 353 (366)
.
T Consensus 200 ~ 200 (242)
T 3l8d_A 200 V 200 (242)
T ss_dssp E
T ss_pred c
Confidence 3
No 48
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.67 E-value=1.8e-16 Score=142.63 Aligned_cols=151 Identities=17% Similarity=0.075 Sum_probs=115.2
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCCC-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPKG- 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~- 260 (366)
.++..+..+.++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 44554443567789999999999999999988 7889999998 7777766542 569999999987 65543
Q ss_pred -CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
|+|++..++|+++ ...+|++++++|+|||++++.+.......... ...+.+... ....++.+++.++
T Consensus 115 fD~i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~ 182 (267)
T 3kkz_A 115 LDLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERPA------EINDFWMDA---YPEIDTIPNQVAK 182 (267)
T ss_dssp EEEEEESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCEEHHHHHHH
T ss_pred EEEEEEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChH------HHHHHHHHh---CCCCCCHHHHHHH
Confidence 9999999999983 35789999999999999999998654332211 111222111 2245689999999
Q ss_pred HHHcCCceeEEEECC
Q 017777 340 AKAAGFQGFQVVSSA 354 (366)
Q Consensus 340 l~~aGf~~~~~~~~~ 354 (366)
++++||+++++...+
T Consensus 183 l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 183 IHKAGYLPVATFILP 197 (267)
T ss_dssp HHHTTEEEEEEEECC
T ss_pred HHHCCCEEEEEEECC
Confidence 999999999988765
No 49
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.66 E-value=1e-15 Score=138.23 Aligned_cols=140 Identities=17% Similarity=0.200 Sum_probs=108.4
Q ss_pred CCCeEEEEeCCc---cHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCCC------------CC--
Q 017777 201 GLNSVVDVGGGI---GATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFVS------------VP-- 258 (366)
Q Consensus 201 ~~~~vLDvG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~~------------~~-- 258 (366)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ .++++++++|+.++ ++
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 458999999999 999888888899999999998 888887764 36899999999752 22
Q ss_pred CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHH
Q 017777 259 KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRA 338 (366)
Q Consensus 259 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 338 (366)
..|+|++..+||++++++...+|++++++|+|||+|++.+...+. .... ....+.+.... .....++.+++.+
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~~~---~~~~~~~~~~~-~~~~~~s~~ei~~ 229 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LPAQ---QKLARITRENL-GEGWARTPEEIER 229 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CHHH---HHHHHHHHHHH-SCCCCBCHHHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hHHH---HHHHHHHHhcC-CCCccCCHHHHHH
Confidence 349999999999999877789999999999999999999976532 1111 11222222221 2456689999999
Q ss_pred HHHHcCCceeE
Q 017777 339 LAKAAGFQGFQ 349 (366)
Q Consensus 339 ll~~aGf~~~~ 349 (366)
+| .||++++
T Consensus 230 ~l--~G~~l~~ 238 (274)
T 2qe6_A 230 QF--GDFELVE 238 (274)
T ss_dssp TT--TTCEECT
T ss_pred Hh--CCCeEcc
Confidence 99 5998764
No 50
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.66 E-value=2.3e-15 Score=142.05 Aligned_cols=215 Identities=10% Similarity=-0.049 Sum_probs=138.9
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhcCCCCC
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGV 123 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~~~~~~ 123 (366)
++|..| . +|.|+.|||+.+++ +++.+++||++|.+.|+++.. ++ |++|+.+..++...+..
T Consensus 47 ~ll~~L-~----~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~~---------~~-~~lt~~~~~~l~~~~~~ 107 (373)
T 2qm3_A 47 NVLSAV-L----ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTFE---------DG-VKLTEKGEELVAEYGIG 107 (373)
T ss_dssp HHHHHH-H----HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECS---------SS-SEECHHHHHHHHHHTCC
T ss_pred HHHHHh-c----CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEEC---------CC-EEECHHHHHHHHhcCcc
Confidence 789999 5 38999999999999 999999999999999999852 34 99999877544322211
Q ss_pred ChhHHH-Hhhc-----ChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHHHHHHHhhhcchhhHHHHHHhcc
Q 017777 124 TLSDLC-LMNQ-----DKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYK 197 (366)
Q Consensus 124 ~~~~~~-~~~~-----~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~ 197 (366)
+..+.+ .... ...+...|..+.+.++....+. ..+++. ...++. .... .. .... ..
T Consensus 108 ~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~-----~~~~~~--~~~~--------~l-~~~~-~~ 169 (373)
T 2qm3_A 108 KRYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPL-HEFDQA-----YVTPET--TVAR--------VI-LMHT-RG 169 (373)
T ss_dssp CCCC------------CGGGHHHHHHHHHHHTTCCCCC-GGGTCC-----CBCHHH--HHHH--------HH-HHHH-TT
T ss_pred ccccccchhhcCCCcchhhhHHHHHHHHHHHhcCCccc-hhcCCe-----ecCHHH--HHHH--------HH-HHhh-cC
Confidence 111111 0000 0111223445555555432211 111110 001111 0001 00 0111 11
Q ss_pred CCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC-----CCEEEe
Q 017777 198 GFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK-----GDAIFI 265 (366)
Q Consensus 198 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~-----~D~i~~ 265 (366)
..++.+|||+| |+|.++..++...++.+++++|+ +.+++.++++ .+++++.+|+.++.|. .|+|++
T Consensus 170 -~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 170 -DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp -CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred -CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEE
Confidence 22468999999 99999999999888789999998 8888877653 3799999999874432 399999
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
...++.. ....+|+++.++|+|||++++.+..
T Consensus 248 ~~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 248 DPPETLE---AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp CCCSSHH---HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CCCCchH---HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 8776643 2478999999999999976555543
No 51
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.66 E-value=2.2e-16 Score=144.62 Aligned_cols=174 Identities=12% Similarity=0.126 Sum_probs=119.1
Q ss_pred hhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---------CCceEEEccCCC-
Q 017777 187 ITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---------PGVEHVGGDMFV- 255 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~- 255 (366)
.....++..++ . ...+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++++|+.+
T Consensus 70 ~~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (299)
T 3g2m_A 70 SEAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF 145 (299)
T ss_dssp HHHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC
T ss_pred HHHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC
Confidence 34555666664 2 3449999999999999999986 568999998 8888777642 579999999987
Q ss_pred CCCCC-CEEEe-ccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchh---------hh-hhh--------
Q 017777 256 SVPKG-DAIFI-KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLA---------SK-VVI-------- 315 (366)
Q Consensus 256 ~~~~~-D~i~~-~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~---------~~-~~~-------- 315 (366)
+.+.. |+|++ ..++|++++++...+|++++++|+|||+|++.....+........ .. ...
T Consensus 146 ~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 225 (299)
T 3g2m_A 146 ALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAE 225 (299)
T ss_dssp CCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEE
T ss_pred CcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccc
Confidence 55544 98886 477888887778899999999999999999977543211000000 00 000
Q ss_pred -hcchhhHh----------hCCCCccCCHHHHHHHHHHcCCceeEEEECC------CceeEEEEEe
Q 017777 316 -HVDCIMLA----------HNPGGKERTEQEFRALAKAAGFQGFQVVSSA------FNTYIMEFLK 364 (366)
Q Consensus 316 -~~~~~~~~----------~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~------~~~~vie~~k 364 (366)
...+.... .....+.++.++|.++|+++||+++++.+.. ....++|+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~~ 291 (299)
T 3g2m_A 226 EIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAVM 291 (299)
T ss_dssp EEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEEC
T ss_pred cEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehhh
Confidence 00000000 0001124699999999999999999998865 2356777764
No 52
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.65 E-value=3.4e-16 Score=138.78 Aligned_cols=144 Identities=12% Similarity=0.090 Sum_probs=105.4
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-C-CceEEEccCCCCCCC-C-CEEEeccccccCCh
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-P-GVEHVGGDMFVSVPK-G-DAIFIKWICHDWSD 274 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-~v~~~~~D~~~~~~~-~-D~i~~~~~lh~~~~ 274 (366)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. . +++++++|+.+..+. . |+|++.++|||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 3567899999999999999998766 6889997 7787776643 2 899999998774333 3 99999999999987
Q ss_pred HHHHHHHHHHH-HhCCCCcEEEEEccccCCCCCCchhhhhhhhcch--------hhHhhCCCCccCCHHHHHHHHHHcCC
Q 017777 275 EHCVKFLKNCY-EALPVNGKVIVAESILPVTPDTSLASKVVIHVDC--------IMLAHNPGGKERTEQEFRALAKAAGF 345 (366)
Q Consensus 275 ~~~~~~L~~~~-~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~t~~e~~~ll~~aGf 345 (366)
. ..+|++++ ++|||||++++.++..... .......... ...........++.++|.++|+++||
T Consensus 119 ~--~~~l~~~~~~~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 191 (250)
T 2p7i_A 119 P--VALLKRINDDWLAEGGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 191 (250)
T ss_dssp H--HHHHHHHHHTTEEEEEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred H--HHHHHHHHHHhcCCCCEEEEEcCChHHH-----HHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCC
Confidence 6 48899999 9999999999987643221 0000000000 00001123456799999999999999
Q ss_pred ceeEEEE
Q 017777 346 QGFQVVS 352 (366)
Q Consensus 346 ~~~~~~~ 352 (366)
+++++..
T Consensus 192 ~~~~~~~ 198 (250)
T 2p7i_A 192 QVTYRSG 198 (250)
T ss_dssp EEEEEEE
T ss_pred eEEEEee
Confidence 9988764
No 53
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.65 E-value=5.2e-16 Score=141.05 Aligned_cols=161 Identities=14% Similarity=0.128 Sum_probs=113.6
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC-C
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG-D 261 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D 261 (366)
.+.+.+....+..+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++. .+++++.+|+.+ +++.. |
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 91 (284)
T 3gu3_A 12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 91 (284)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCee
Confidence 44544433567899999999999999999999984 89999998 7777766532 379999999987 55544 9
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc-----C---CCCCCchhhhhhhhcchhhHh-hCCCCccCC
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL-----P---VTPDTSLASKVVIHVDCIMLA-HNPGGKERT 332 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~-----~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t 332 (366)
+|++..++|++++.. .+|++++++|+|||++++.++.. . ++...........+..+.... ...+....+
T Consensus 92 ~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (284)
T 3gu3_A 92 IAICHAFLLHMTTPE--TMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNI 169 (284)
T ss_dssp EEEEESCGGGCSSHH--HHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTG
T ss_pred EEEECChhhcCCCHH--HHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccH
Confidence 999999999998764 88999999999999999998651 1 111100000011111111100 012344556
Q ss_pred HHHHHHHHHHcCCceeEEEEC
Q 017777 333 EQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 333 ~~e~~~ll~~aGf~~~~~~~~ 353 (366)
..++.++|+++||+.+++...
T Consensus 170 ~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 170 GMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp GGTHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEc
Confidence 778999999999999877443
No 54
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.65 E-value=1.8e-16 Score=140.46 Aligned_cols=138 Identities=18% Similarity=0.279 Sum_probs=109.9
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCC--CCEEEeccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPK--GDAIFIKWICH 270 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~--~D~i~~~~~lh 270 (366)
+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+. .|+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999988876 558999998 8887776542 258899999876 5544 39999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEE
Q 017777 271 DWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQV 350 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 350 (366)
++++++...+|++++++|+|||++++.+...... . .++. ......++.++|.++|+++||++++.
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~-------~~~~-----~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG---V-------ILDD-----VDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS---E-------EEET-----TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc---c-------eecc-----cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 9998888899999999999999999998765441 0 1110 01233458999999999999999988
Q ss_pred EECC
Q 017777 351 VSSA 354 (366)
Q Consensus 351 ~~~~ 354 (366)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 7653
No 55
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.64 E-value=5.7e-16 Score=136.67 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=106.1
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC-C-CEEEecccccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK-G-DAIFIKWICHD 271 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~-~-D~i~~~~~lh~ 271 (366)
..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++. .+++++++|+.+..+. . |+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999998876 6778999998 7777766542 3599999999883333 3 99999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
+++++...+|++++++|+|||++++.+......... ....++.++|.++|+++||+++++.
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEEEEE
Confidence 997778899999999999999999987654332111 1112578999999999999999887
Q ss_pred ECC
Q 017777 352 SSA 354 (366)
Q Consensus 352 ~~~ 354 (366)
..+
T Consensus 206 ~~~ 208 (235)
T 3lcc_A 206 ENP 208 (235)
T ss_dssp ECT
T ss_pred ecC
Confidence 764
No 56
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.64 E-value=1.5e-15 Score=134.41 Aligned_cols=160 Identities=17% Similarity=0.125 Sum_probs=108.8
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CCceEEEccCCC-CCCCC--CE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PGVEHVGGDMFV-SVPKG--DA 262 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~ 262 (366)
+.+...++ ..+..+|||||||+|.++..+++... .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+
T Consensus 33 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 33 PALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp HHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceE
Confidence 34555554 45678999999999999999988732 28999998 7887776543 479999999877 55433 99
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC--CCCCCchhh--------hhhhhc-----chhhHhhCCC
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP--VTPDTSLAS--------KVVIHV-----DCIMLAHNPG 327 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~--~~~~~~~~~--------~~~~~~-----~~~~~~~~~~ 327 (366)
|++.+++|++++. ..+|++++++|+|||++++...... ......+.. .....+ ..........
T Consensus 111 v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (243)
T 3bkw_A 111 AYSSLALHYVEDV--ARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVV 188 (243)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCC
T ss_pred EEEeccccccchH--HHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceE
Confidence 9999999998754 5889999999999999999764211 000000000 000000 0000000012
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
...++.++|.++|+++||+++++...
T Consensus 189 ~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 189 KHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEeccHHHHHHHHHHcCCEeeeeccC
Confidence 23368999999999999999988764
No 57
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.64 E-value=1e-15 Score=145.00 Aligned_cols=144 Identities=20% Similarity=0.294 Sum_probs=110.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC--------------CCceEEEccCCC-------C
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF--------------PGVEHVGGDMFV-------S 256 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~D~~~-------~ 256 (366)
.+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. ++++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 356899999999999999999987 7889999998 8888777643 689999999976 4
Q ss_pred CCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHH
Q 017777 257 VPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQ 334 (366)
Q Consensus 257 ~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 334 (366)
++.. |+|+++.++|++++. ..+|++++++|||||+|++.+...+..... .. ......... ..+..++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-----~~-~~~~~~~~~-~~~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRDGGELYFSDVYADRRLSE-----AA-QQDPILYGE-CLGGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEESSCCCH-----HH-HHCHHHHHT-TCTTCCBHH
T ss_pred CCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCCCCEEEEEEeccccccCH-----hH-hhhHHHhhc-ccccCCCHH
Confidence 4443 999999999999875 588999999999999999998765432111 00 111111111 234567899
Q ss_pred HHHHHHHHcCCceeEEEE
Q 017777 335 EFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 335 e~~~ll~~aGf~~~~~~~ 352 (366)
+|.++|+++||+.+++..
T Consensus 233 ~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999876544
No 58
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.63 E-value=2.1e-15 Score=136.09 Aligned_cols=161 Identities=11% Similarity=0.055 Sum_probs=112.6
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hh------HHhhCCCC-------CCceEEEcc-C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PH------VIQDAPAF-------PGVEHVGGD-M 253 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~~-------~~v~~~~~D-~ 253 (366)
..+++.++ ..+..+|||||||+|.++..+++.+ |+.+++++|+ +. +++.+++. ++++++.+| +
T Consensus 33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 35566665 6678899999999999999999986 7789999998 43 66655432 579999998 4
Q ss_pred CC---CCCC--CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC---
Q 017777 254 FV---SVPK--GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN--- 325 (366)
Q Consensus 254 ~~---~~~~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 325 (366)
.. +++. .|+|++.+++|++++.+ .+++.++++++|||++++.+...+..................+....
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSD 189 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCT
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccc
Confidence 43 3343 39999999999998875 47888888888899999999876543211100000001110010000
Q ss_pred CC--CccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 326 PG--GKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 326 ~~--~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
.. ...++.++|.++++++||++++....
T Consensus 190 ~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 190 VANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp TCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 01 24579999999999999999887665
No 59
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.63 E-value=3.1e-15 Score=127.45 Aligned_cols=143 Identities=20% Similarity=0.249 Sum_probs=112.5
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCC-CCCCC--CEEEe
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFV-SVPKG--DAIFI 265 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~~ 265 (366)
.++..+ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 455544 356789999999999999999986 568999998 7777777643 679999999987 55533 99999
Q ss_pred c-cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcC
Q 017777 266 K-WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAG 344 (366)
Q Consensus 266 ~-~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 344 (366)
. .++|++++++...+|++++++|+|||++++.... ...++.+++.++++++|
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~---------------------------~~~~~~~~~~~~l~~~G 166 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA---------------------------GRGWVFGDFLEVAERVG 166 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET---------------------------TSSCCHHHHHHHHHHHT
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC---------------------------CCCcCHHHHHHHHHHcC
Confidence 8 8999988888889999999999999999986431 11256889999999999
Q ss_pred CceeEEEEC--------CCceeEEEEEe
Q 017777 345 FQGFQVVSS--------AFNTYIMEFLK 364 (366)
Q Consensus 345 f~~~~~~~~--------~~~~~vie~~k 364 (366)
|++++.... .....++.++|
T Consensus 167 f~~~~~~~~~~~~~~~~~~~~~~~v~~k 194 (195)
T 3cgg_A 167 LELENAFESWDLKPFVQGSEFLVAVFTK 194 (195)
T ss_dssp EEEEEEESSTTCCBCCTTCSEEEEEEEE
T ss_pred CEEeeeecccccCcCCCCCcEEEEEEec
Confidence 999887654 13445555555
No 60
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.62 E-value=1.8e-15 Score=131.74 Aligned_cols=143 Identities=13% Similarity=0.063 Sum_probs=103.2
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----------CCceEEEccCCC-CCC--CCCEE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----------PGVEHVGGDMFV-SVP--KGDAI 263 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~~--~~D~i 263 (366)
..+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++. .+++++.+|+.. +.+ ..|+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 34568999999999999999999888889999998 7787766542 279999999865 333 24999
Q ss_pred EeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH----HH
Q 017777 264 FIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR----AL 339 (366)
Q Consensus 264 ~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~----~l 339 (366)
++..++|++++++...+|++++++|||||.+++....... ..+.......... ......++.+++. ++
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 178 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYN-------VKFANLPAGKLRH-KDHRFEWTRSQFQNWANKI 178 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHH-------HHTC------------CCSCBCHHHHHHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccc-------hhhcccccccccc-cccccccCHHHHHHHHHHH
Confidence 9999999999888889999999999999977765542100 0000000000000 1123446899999 89
Q ss_pred HHHcCCceeE
Q 017777 340 AKAAGFQGFQ 349 (366)
Q Consensus 340 l~~aGf~~~~ 349 (366)
++++||+++.
T Consensus 179 ~~~~Gf~v~~ 188 (217)
T 3jwh_A 179 TERFAYNVQF 188 (217)
T ss_dssp HHHSSEEEEE
T ss_pred HHHcCceEEE
Confidence 9999998643
No 61
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.62 E-value=3.4e-15 Score=131.23 Aligned_cols=148 Identities=15% Similarity=0.069 Sum_probs=106.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----------CCceEEEccCCC-CCCCC--CEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----------PGVEHVGGDMFV-SVPKG--DAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~~~~--D~i~ 264 (366)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++++..+|+.+ +++.. |+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 45789999999999999999987 668999998 7777665431 257999999987 55543 9999
Q ss_pred eccccccCChH-HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC--------------CCCc
Q 017777 265 IKWICHDWSDE-HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN--------------PGGK 329 (366)
Q Consensus 265 ~~~~lh~~~~~-~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 329 (366)
+..++|++++. +...+|++++++|+|||++++.+......... . .......+...... ....
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKL--Y-RKRYLHDFPITKEEGSFLARDPETGETEFIAH 183 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHH--H-HHHHHHHHHHHCSTTEEEEECTTTCCEEEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHH--H-HHHhhhhccchhhhcceEecccccCCcceeeE
Confidence 99999999764 46689999999999999999998765332100 0 00000000000000 0013
Q ss_pred cCCHHHHHHHHHHcCCceeEEEE
Q 017777 330 ERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 330 ~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
.++.++|.++|+++||+++++..
T Consensus 184 ~~~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 184 HFTEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp CBCHHHHHHHHHTTTEEEEEEEE
T ss_pred eCCHHHHHHHHHHcCCEEEEEEe
Confidence 57999999999999999988754
No 62
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.61 E-value=4.7e-15 Score=131.12 Aligned_cols=162 Identities=15% Similarity=0.174 Sum_probs=110.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC-CEEEecc-cccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG-DAIFIKW-ICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~~-~lh~ 271 (366)
...+|||||||+|.++..+++. .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. ++|+
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 109 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNY 109 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGG
T ss_pred CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhh
Confidence 4589999999999999998876 68999998 8888776542 579999999877 55544 9999986 9988
Q ss_pred C-ChHHHHHHHHHHHHhCCCCcEEEEEcccc-------CCC-----CCCchh--h------hhhhhcchhhHhhCCCC--
Q 017777 272 W-SDEHCVKFLKNCYEALPVNGKVIVAESIL-------PVT-----PDTSLA--S------KVVIHVDCIMLAHNPGG-- 328 (366)
Q Consensus 272 ~-~~~~~~~~L~~~~~~L~pgG~lli~e~~~-------~~~-----~~~~~~--~------~~~~~~~~~~~~~~~~~-- 328 (366)
+ +.++...+|++++++|+|||++++.-... +.. ...... . .......+.+.....++
T Consensus 110 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (243)
T 3d2l_A 110 LQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRY 189 (243)
T ss_dssp CCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEECTTSCE
T ss_pred cCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEEcCCCce
Confidence 8 45667899999999999999998732211 000 000000 0 00000000010000011
Q ss_pred ---------ccCCHHHHHHHHHHcCCceeEEEEC--------CCceeEEEEEec
Q 017777 329 ---------KERTEQEFRALAKAAGFQGFQVVSS--------AFNTYIMEFLKS 365 (366)
Q Consensus 329 ---------~~~t~~e~~~ll~~aGf~~~~~~~~--------~~~~~vie~~k~ 365 (366)
+.++.+++.++|+++||+++++... .....++.++|.
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K~ 243 (243)
T 3d2l_A 190 DRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEKI 243 (243)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEEC
T ss_pred EEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEeC
Confidence 3579999999999999999998764 245567888874
No 63
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.61 E-value=2e-15 Score=136.76 Aligned_cols=153 Identities=15% Similarity=0.092 Sum_probs=111.3
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCC-CCCCC-CEEEec
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFV-SVPKG-DAIFIK 266 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~-D~i~~~ 266 (366)
.++..+. ..+..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++. ++++++.+|+.+ +++.. |+|++.
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 124 (279)
T 3ccf_A 48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSN 124 (279)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEc
Confidence 4455555 56678999999999999999998 7889999998 8888777643 789999999987 55444 999999
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHh------hCCCCccCCHHHHHHHH
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLA------HNPGGKERTEQEFRALA 340 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~t~~e~~~ll 340 (366)
+++|++++.. .+|++++++|+|||++++........ .. ............ .......++.++|.++|
T Consensus 125 ~~l~~~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (279)
T 3ccf_A 125 AMLHWVKEPE--AAIASIHQALKSGGRFVAEFGGKGNI---KY--ILEALYNALETLGIHNPQALNPWYFPSIGEYVNIL 197 (279)
T ss_dssp SCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECTTTT---HH--HHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHH
T ss_pred chhhhCcCHH--HHHHHHHHhcCCCcEEEEEecCCcch---HH--HHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHH
Confidence 9999988754 78999999999999999976543221 00 000011100000 00012346899999999
Q ss_pred HHcCCceeEEEEC
Q 017777 341 KAAGFQGFQVVSS 353 (366)
Q Consensus 341 ~~aGf~~~~~~~~ 353 (366)
+++||+++++...
T Consensus 198 ~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 198 EKQGFDVTYAALF 210 (279)
T ss_dssp HHHTEEEEEEEEE
T ss_pred HHcCCEEEEEEEe
Confidence 9999998876543
No 64
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.61 E-value=1.3e-15 Score=138.37 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=110.4
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-C-CCC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-S-VPK 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~-~~~ 259 (366)
..++..++ .++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ + ++.
T Consensus 59 ~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 59 DRVLAEMG--PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHHTC--SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHHhcC--CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 34555554 23579999999999999999987 678999998 8788776542 579999999987 3 343
Q ss_pred C--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHh-------hCCCCcc
Q 017777 260 G--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLA-------HNPGGKE 330 (366)
Q Consensus 260 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 330 (366)
. |+|++.+++|++++. ..+|++++++|+|||++++.+....... ............... .......
T Consensus 135 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLL---MHNMVAGNFDYVQAGMPKKKKRTLSPDYP 209 (285)
T ss_dssp SCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHH---HHHHHTTCHHHHHTTCCCC----CCCSCC
T ss_pred CCceEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHH---HHHHHhcCHHHHhhhccccccccCCCCCC
Confidence 3 999999999999876 4789999999999999999876432100 000000000000000 0012345
Q ss_pred CCHHHHHHHHHHcCCceeEEEECC
Q 017777 331 RTEQEFRALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 331 ~t~~e~~~ll~~aGf~~~~~~~~~ 354 (366)
++.++|.++|+++||+++++....
T Consensus 210 ~~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 210 RDPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp BCHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCHHHHHHHHHHCCCceeeeeeEE
Confidence 789999999999999999887653
No 65
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.61 E-value=2.7e-15 Score=128.50 Aligned_cols=142 Identities=12% Similarity=0.083 Sum_probs=108.9
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCCC-C
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPKG-D 261 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~-D 261 (366)
.+.+.++ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 3444444 445679999999999999999986 568999998 7777776542 479999999887 55333 9
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHH
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAK 341 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 341 (366)
+|++..++|++++++...+|++++++|+|||++++++.......... ......++.+++.++|+
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~ 163 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRYYE 163 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHHHHHTT
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHHHHHhc
Confidence 99999999999877778999999999999999999887654431110 01233467889999998
Q ss_pred HcCCceeEEEEC
Q 017777 342 AAGFQGFQVVSS 353 (366)
Q Consensus 342 ~aGf~~~~~~~~ 353 (366)
+ |++++....
T Consensus 164 ~--f~~~~~~~~ 173 (199)
T 2xvm_A 164 G--WERVKYNED 173 (199)
T ss_dssp T--SEEEEEECC
T ss_pred C--CeEEEeccc
Confidence 6 998876543
No 66
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.61 E-value=2.5e-15 Score=133.05 Aligned_cols=163 Identities=12% Similarity=0.093 Sum_probs=112.2
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC-CEEEecc-cccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG-DAIFIKW-ICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~~-~lh~ 271 (366)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++++|+.+ +.+.. |+|++.+ ++|+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5689999999999999999987 468999998 8888776643 279999999887 55544 9999998 9999
Q ss_pred CCh-HHHHHHHHHHHHhCCCCcEEEEEccccCC----CCCCch---hhh----h-------hhhcchhhHhhCC------
Q 017777 272 WSD-EHCVKFLKNCYEALPVNGKVIVAESILPV----TPDTSL---ASK----V-------VIHVDCIMLAHNP------ 326 (366)
Q Consensus 272 ~~~-~~~~~~L~~~~~~L~pgG~lli~e~~~~~----~~~~~~---~~~----~-------~~~~~~~~~~~~~------ 326 (366)
+++ ++...+|++++++|+|||++++....... -..... ... + .....+.+.....
T Consensus 115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRF 194 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCccccc
Confidence 844 56789999999999999999984321100 000000 000 0 0000000000000
Q ss_pred ----CCccCCHHHHHHHHHHcCCceeEEEEC--------CCceeEEEEEec
Q 017777 327 ----GGKERTEQEFRALAKAAGFQGFQVVSS--------AFNTYIMEFLKS 365 (366)
Q Consensus 327 ----~~~~~t~~e~~~ll~~aGf~~~~~~~~--------~~~~~vie~~k~ 365 (366)
..+.++.++|.++|+++||+++++... .....++.++|+
T Consensus 195 ~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~ 245 (246)
T 1y8c_A 195 DEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG 245 (246)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred EEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence 124569999999999999999998764 235567888875
No 67
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.61 E-value=6.1e-15 Score=128.68 Aligned_cols=137 Identities=20% Similarity=0.154 Sum_probs=101.5
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCC--CEEEeccccccCChHHH
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEHC 277 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~~ 277 (366)
..+|||||||+|.++..++.. +++|. +.+++.+++. +++++.+|+.+ +++.. |+|++.+++|++++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~-- 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP-- 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--
Confidence 689999999999999988764 88897 8888877655 89999999877 55543 999999999998765
Q ss_pred HHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 278 VKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 278 ~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
..+|+++.++|+|||++++.+...... .......... ..........++.++|.++|+++||+++++...
T Consensus 119 ~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 ERALKEAYRILKKGGYLIVGIVDRESF-----LGREYEKNKE-KSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSH-----HHHHHHHTTT-C-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeCCccH-----HHHHHHHHhc-CcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 478999999999999999987643221 0000000000 000001245579999999999999999887664
No 68
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.61 E-value=1.4e-15 Score=135.99 Aligned_cols=151 Identities=13% Similarity=0.132 Sum_probs=109.8
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-CCCceEEEccCCC-CCCCC--CEEE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-FPGVEHVGGDMFV-SVPKG--DAIF 264 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~-~~~~~--D~i~ 264 (366)
..++..+. .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ + +.. |+|+
T Consensus 23 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~ 100 (259)
T 2p35_A 23 RDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLY 100 (259)
T ss_dssp HHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEE
Confidence 35666665 56678999999999999999999999999999998 888887764 3789999999987 5 433 9999
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcc--hhhHhh----CCCCccCCHHHHHH
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVD--CIMLAH----NPGGKERTEQEFRA 338 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~t~~e~~~ 338 (366)
+.+++|++++. ..+|++++++|+|||++++........ ........... .+.... ......++.++|.+
T Consensus 101 ~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (259)
T 2p35_A 101 ANAVFQWVPDH--LAVLSQLMDQLESGGVLAVQMPDNLQE---PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFN 175 (259)
T ss_dssp EESCGGGSTTH--HHHHHHHGGGEEEEEEEEEEEECCTTS---HHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHH
T ss_pred EeCchhhCCCH--HHHHHHHHHhcCCCeEEEEEeCCCCCc---HHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHH
Confidence 99999999764 478999999999999999987532211 10000000000 000000 01234578999999
Q ss_pred HHHHcCCce
Q 017777 339 LAKAAGFQG 347 (366)
Q Consensus 339 ll~~aGf~~ 347 (366)
+|+++||++
T Consensus 176 ~l~~aGf~v 184 (259)
T 2p35_A 176 ALSPKSSRV 184 (259)
T ss_dssp HHGGGEEEE
T ss_pred HHHhcCCce
Confidence 999999974
No 69
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.60 E-value=1.1e-15 Score=136.24 Aligned_cols=159 Identities=16% Similarity=0.114 Sum_probs=109.1
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC---CCCceEEEccCCC-CCCCC--CE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA---FPGVEHVGGDMFV-SVPKG--DA 262 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~D~~~-~~~~~--D~ 262 (366)
..+...++ ..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.+ +++.. |+
T Consensus 34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 34555444 446789999999999999999998654 8999998 778777654 3689999999977 66543 99
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC------------CCCCCchhhhhhhhcc-----hhhHhhC
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP------------VTPDTSLASKVVIHVD-----CIMLAHN 325 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~------------~~~~~~~~~~~~~~~~-----~~~~~~~ 325 (366)
|++..++|++++. ..+|++++++|+|||++++...... ......... ....++ .......
T Consensus 112 v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 188 (253)
T 3g5l_A 112 VLSSLALHYIASF--DDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWP-VDRYFNESMRTSHFLGED 188 (253)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEE-ECCTTCCCEEEEEETTEE
T ss_pred EEEchhhhhhhhH--HHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEE-eccccccceEEEeecccc
Confidence 9999999999664 5889999999999999999743210 000000000 000000 0000000
Q ss_pred CCCccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 326 PGGKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 326 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
.....+|.++|.++|+++||+++++...
T Consensus 189 ~~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 189 VQKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EEEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred CccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 0111249999999999999999988754
No 70
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.60 E-value=8.7e-15 Score=127.19 Aligned_cols=133 Identities=18% Similarity=0.152 Sum_probs=103.6
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCC-CCCCC--CEEEec
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFV-SVPKG--DAIFIK 266 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~ 266 (366)
..++..+....+..+|||||||+|.++..+. .+++++|+.+. +++++.+|+.+ +++.+ |+|++.
T Consensus 56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 56 DRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred HHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence 3455544434566899999999999988772 57899997332 68899999887 66543 999999
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
+++|+ ++ ...+|++++++|+|||++++.+.... ..+.++|.++++++||+
T Consensus 123 ~~l~~-~~--~~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~Gf~ 172 (215)
T 2zfu_A 123 LSLMG-TN--IRDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKLGFK 172 (215)
T ss_dssp SCCCS-SC--HHHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHTTEE
T ss_pred hhccc-cC--HHHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHCCCE
Confidence 99984 43 45889999999999999999874311 12688999999999999
Q ss_pred eeEEEECCCceeEEEEEec
Q 017777 347 GFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 347 ~~~~~~~~~~~~vie~~k~ 365 (366)
++........+.++.++|.
T Consensus 173 ~~~~~~~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 173 IVSKDLTNSHFFLFDFQKT 191 (215)
T ss_dssp EEEEECCSTTCEEEEEEEC
T ss_pred EEEEecCCCeEEEEEEEec
Confidence 9887766677788888875
No 71
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.59 E-value=5.4e-15 Score=132.33 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=102.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----CCCceEEEccCCC-CCCCC--CEEEecccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----FPGVEHVGGDMFV-SVPKG--DAIFIKWIC 269 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~-~~~~~--D~i~~~~~l 269 (366)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ +++.+ |+|++.+++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 556789999999999999999986 568999997 777776643 3689999999977 55543 999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCC---CCccCCHHHHHHHHHHcCCc
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNP---GGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~t~~e~~~ll~~aGf~ 346 (366)
|++++. ..+|++++++|+|||++++. ...++ .............+......+ ....++.+++.++|+++||+
T Consensus 115 ~~~~~~--~~~l~~~~~~L~pgG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLKPGGALLEG-WDQAE--ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEEEEEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcCCH--HHHHHHHHHHCCCCcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 999864 47899999999999999988 21111 011000000011111110000 11345789999999999999
Q ss_pred eeEEE
Q 017777 347 GFQVV 351 (366)
Q Consensus 347 ~~~~~ 351 (366)
++.+.
T Consensus 190 ~~~~~ 194 (263)
T 2yqz_A 190 PRTRE 194 (263)
T ss_dssp CEEEE
T ss_pred cceEE
Confidence 77653
No 72
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.59 E-value=9.3e-16 Score=139.96 Aligned_cols=145 Identities=16% Similarity=0.229 Sum_probs=103.2
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------------------------------------
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------------------------------------ 243 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------------------------ 243 (366)
...+|||||||+|.++..+++.++..+++++|+ +.+++.+++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 568999999999999999999999999999998 7777766432
Q ss_pred ----------------------------CCceEEEccCCCCC------CC--CCEEEeccccccC----ChHHHHHHHHH
Q 017777 244 ----------------------------PGVEHVGGDMFVSV------PK--GDAIFIKWICHDW----SDEHCVKFLKN 283 (366)
Q Consensus 244 ----------------------------~~v~~~~~D~~~~~------~~--~D~i~~~~~lh~~----~~~~~~~~L~~ 283 (366)
.+|+|+++|+.... +. .|+|++..+++++ +++....+|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 37999999998622 22 3999999999665 66778899999
Q ss_pred HHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHH--cCCceeEEEEC
Q 017777 284 CYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKA--AGFQGFQVVSS 353 (366)
Q Consensus 284 ~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~--aGf~~~~~~~~ 353 (366)
++++|+|||+|++.......... ........... ........+++.++|.+ +||+.+++...
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~------~~~~~~~~~~~--~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGK------RKTLTETIYKN--YYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHT------TTTSCHHHHHH--HHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHhCCCcEEEEecCCchhhhh------hhcccHHHHhh--hhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999999985432211000 00000000000 01223447899999999 99988877654
No 73
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.59 E-value=1.9e-15 Score=131.99 Aligned_cols=153 Identities=16% Similarity=0.076 Sum_probs=107.9
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC----C-CC-C-CCE
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV----S-VP-K-GDA 262 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~----~-~~-~-~D~ 262 (366)
.++..+. ...+.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+...|+.+ + .+ . .|+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 3444444 345689999999999999999987 668999998 8888888877888888888654 1 12 2 399
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC-----CCCccCCHHHHH
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN-----PGGKERTEQEFR 337 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~t~~e~~ 337 (366)
|++.+++| +++. ..+|++++++|+|||++++.+............. ........... .....++.++|.
T Consensus 120 v~~~~~l~-~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
T 3e8s_A 120 ICANFALL-HQDI--IELLSAMRTLLVPGGALVIQTLHPWSVADGDYQD---GWREESFAGFAGDWQPMPWYFRTLASWL 193 (227)
T ss_dssp EEEESCCC-SSCC--HHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSC---EEEEECCTTSSSCCCCEEEEECCHHHHH
T ss_pred EEECchhh-hhhH--HHHHHHHHHHhCCCeEEEEEecCccccCcccccc---ccchhhhhccccCcccceEEEecHHHHH
Confidence 99999999 5544 4889999999999999999887543322110000 00000000000 011345899999
Q ss_pred HHHHHcCCceeEEEE
Q 017777 338 ALAKAAGFQGFQVVS 352 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~ 352 (366)
++|+++||+++++..
T Consensus 194 ~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 194 NALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHTTEEEEEEEC
T ss_pred HHHHHcCCeEEEEec
Confidence 999999999998765
No 74
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.57 E-value=3.6e-15 Score=132.28 Aligned_cols=147 Identities=13% Similarity=0.117 Sum_probs=106.3
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC---CCCceEEEccCCC-CCCC-------CCEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA---FPGVEHVGGDMFV-SVPK-------GDAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~D~~~-~~~~-------~D~i~~~ 266 (366)
..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++++|+.+ +.+. .|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45678999999999999999999887 7889997 778776654 2589999999987 3221 4999999
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhh-----cchhhHh-hCCCCccCCHHHHHHHH
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIH-----VDCIMLA-HNPGGKERTEQEFRALA 340 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~t~~e~~~ll 340 (366)
.++|++++++...+|++++++|||||++++.+...++.. ........ ..+.... .......++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCID---FFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHH---HHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccH---HHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 999999987788999999999999999999987544310 00000000 0000000 00112236899999999
Q ss_pred HHcCCceeEEEE
Q 017777 341 KAAGFQGFQVVS 352 (366)
Q Consensus 341 ~~aGf~~~~~~~ 352 (366)
+||++++...
T Consensus 209 --aGf~~~~~~~ 218 (245)
T 3ggd_A 209 --PDFEILSQGE 218 (245)
T ss_dssp --TTEEEEEEEC
T ss_pred --CCCEEEeccc
Confidence 9999987544
No 75
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.57 E-value=7.5e-15 Score=131.16 Aligned_cols=96 Identities=15% Similarity=0.092 Sum_probs=84.2
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCC--CEEEeccccccCChHH
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEH 276 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~ 276 (366)
...+|||||||+|.++..|++.+ .+++++|+ +.+++.+++.++++++++|+.+ +++++ |+|++..++|+++.+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~- 115 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD- 115 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH-
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH-
Confidence 45789999999999999999865 47899998 8999999988999999999987 77765 999999999987643
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 277 CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 277 ~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.++++++++|||||+|+++....
T Consensus 116 --~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 116 --RFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp --HHHHHHHHHEEEEEEEEEEEECC
T ss_pred --HHHHHHHHHcCCCCEEEEEECCC
Confidence 68999999999999999987543
No 76
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.56 E-value=5.8e-15 Score=129.18 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=107.6
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC---CCCCC--CEE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV---SVPKG--DAI 263 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~~~~--D~i 263 (366)
+.+++.++ .+..+|||||||+|.++..+++. + .+++++|+ +.+++.+++.. .++..+|+.+ +++.. |+|
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEE
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEE
Confidence 34555443 45689999999999999999987 4 79999998 78887776432 4788889865 33433 999
Q ss_pred EeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhc-chhhH-----hhCCCCccCCHHHHH
Q 017777 264 FIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHV-DCIML-----AHNPGGKERTEQEFR 337 (366)
Q Consensus 264 ~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~t~~e~~ 337 (366)
++.+++|++++.. .+|++++++|+|||++++..+..... ....... ..+.. ........++.++|.
T Consensus 98 ~~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (230)
T 3cc8_A 98 IFGDVLEHLFDPW--AVIEKVKPYIKQNGVILASIPNVSHI------SVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEML 169 (230)
T ss_dssp EEESCGGGSSCHH--HHHHHTGGGEEEEEEEEEEEECTTSH------HHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHH
T ss_pred EECChhhhcCCHH--HHHHHHHHHcCCCCEEEEEeCCcchH------HHHHHHhcCCceeccCCCCCcceEEEecHHHHH
Confidence 9999999998764 88999999999999999987543211 0000000 00000 000122457999999
Q ss_pred HHHHHcCCceeEEEEC
Q 017777 338 ALAKAAGFQGFQVVSS 353 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~~ 353 (366)
++|+++||+++++...
T Consensus 170 ~~l~~~Gf~~~~~~~~ 185 (230)
T 3cc8_A 170 RMFLKAGYSISKVDRV 185 (230)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHcCCeEEEEEec
Confidence 9999999999887764
No 77
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.56 E-value=2.3e-15 Score=130.04 Aligned_cols=151 Identities=9% Similarity=-0.059 Sum_probs=105.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC--CEEEecccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG--DAIFIKWIC 269 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~--D~i~~~~~l 269 (366)
..+..+|||||||+|..+..++.. ++.+++++|. +.+++.+++. .+++++.+|+.+ +++.. |+|++.+++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 345689999999999985555443 5679999998 7887776542 579999999987 65543 999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
|+++.++...+|++++++|+|||++++.+...++.+...........+.............++.+++.++|.++||...+
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~ 179 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE 179 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence 99987788899999999999999999998765543211000000000000000000012456899999999999997654
Q ss_pred E
Q 017777 350 V 350 (366)
Q Consensus 350 ~ 350 (366)
.
T Consensus 180 ~ 180 (209)
T 2p8j_A 180 D 180 (209)
T ss_dssp E
T ss_pred e
Confidence 3
No 78
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.54 E-value=2.3e-14 Score=127.68 Aligned_cols=132 Identities=10% Similarity=-0.070 Sum_probs=101.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----------------------CCCceEEEccCCC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----------------------FPGVEHVGGDMFV 255 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~v~~~~~D~~~ 255 (366)
.+..+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+++++++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 45689999999999999999985 568999998 888776632 2578999999988
Q ss_pred -CCC--C-CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccC
Q 017777 256 -SVP--K-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKER 331 (366)
Q Consensus 256 -~~~--~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (366)
+.+ . .|+|++..+||++++++...++++++++|||||+++++....+... . .......
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~-----------~-------~g~~~~~ 206 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK-----------H-------AGPPFYV 206 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS-----------C-------CCSSCCC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc-----------C-------CCCCCCC
Confidence 443 2 3999999999999887778999999999999999987655432210 0 0011125
Q ss_pred CHHHHHHHHHHcCCceeEEEE
Q 017777 332 TEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 332 t~~e~~~ll~~aGf~~~~~~~ 352 (366)
+.+++.++|.. +|+++....
T Consensus 207 ~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 207 PSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CHHHHHHHHTT-TEEEEEEEE
T ss_pred CHHHHHHHhhC-CeEEEEEec
Confidence 78999999987 598876544
No 79
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.6e-14 Score=130.71 Aligned_cols=163 Identities=20% Similarity=0.150 Sum_probs=108.8
Q ss_pred HHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCC--------CCC
Q 017777 176 IFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPA--------FPG 245 (366)
Q Consensus 176 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~ 245 (366)
.|.+....+.......+.... ..+..+|||||||+|..+..+++.+ +..+++++|+ +.+++.+++ ..+
T Consensus 13 ~y~~~rp~y~~~~~~~l~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~ 90 (299)
T 3g5t_A 13 RYSSSRPSYPSDFYKMIDEYH--DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKN 90 (299)
T ss_dssp HHHHHSCCCCHHHHHHHHHHC--CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTT
T ss_pred HHhhcCCCCCHHHHHHHHHHh--cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCc
Confidence 344433344443444444432 3467899999999999999999887 8899999998 888877754 368
Q ss_pred ceEEEccCCC-CCCC------C--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhh
Q 017777 246 VEHVGGDMFV-SVPK------G--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIH 316 (366)
Q Consensus 246 v~~~~~D~~~-~~~~------~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 316 (366)
++++++|+.+ +++. + |+|++..++|++ + ...+|++++++|+|||+|++.+...+........ ...
T Consensus 91 v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~---~~~ 164 (299)
T 3g5t_A 91 VSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEF---DDL 164 (299)
T ss_dssp EEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGG---TTH
T ss_pred eEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEecCCccccCcHHH---HHH
Confidence 9999999987 5443 3 999999999998 3 4588999999999999999955432211111100 111
Q ss_pred cchhhH---hhCCCCccCCHHHHHHHHHHcCCc
Q 017777 317 VDCIML---AHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 317 ~~~~~~---~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
+.-+.. ...+--.....+.+.++++++||.
T Consensus 165 ~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~gfp 197 (299)
T 3g5t_A 165 MIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHLD 197 (299)
T ss_dssp HHHHHHCTTTTGGGSCTTHHHHHHTTTTTCCCC
T ss_pred HHHhccCcccccchhhchhhHHHHHhhhccCCC
Confidence 111110 000001113566789999999993
No 80
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.51 E-value=6.3e-15 Score=134.31 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=84.8
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----------CCceEEEccCCC-C---
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----------PGVEHVGGDMFV-S--- 256 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~-~--- 256 (366)
+...++ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++.+..+|+.+ +
T Consensus 49 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 125 (293)
T 3thr_A 49 LLGLLR-QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV 125 (293)
T ss_dssp HHHHHH-HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred HHHHhc-ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence 333333 345689999999999999999987 448999998 7888777431 578899999877 5
Q ss_pred CCCC--CEEEec-cccccCCh-----HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 257 VPKG--DAIFIK-WICHDWSD-----EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 257 ~~~~--D~i~~~-~~lh~~~~-----~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
++.. |+|++. +++|++++ ++...+|++++++|||||++++...
T Consensus 126 ~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 126 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4533 999998 89999988 6778999999999999999998764
No 81
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.51 E-value=1.6e-14 Score=129.45 Aligned_cols=152 Identities=11% Similarity=0.038 Sum_probs=108.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----C------------------------------
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----P------------------------------ 244 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~------------------------------ 244 (366)
.+..+|||||||+|.++..++...+ .+++++|+ +.+++.+++. .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4568999999999999998887655 47999998 7777766431 1
Q ss_pred -Cc-eEEEccCCC--CCCC---C--CEEEeccccccCCh--HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhh
Q 017777 245 -GV-EHVGGDMFV--SVPK---G--DAIFIKWICHDWSD--EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKV 313 (366)
Q Consensus 245 -~v-~~~~~D~~~--~~~~---~--D~i~~~~~lh~~~~--~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~ 313 (366)
++ +++.+|+.+ +.+. . |+|++..++|+++. ++...+|++++++|+|||++++.+......
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~--------- 204 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY--------- 204 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE---------
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce---------
Confidence 17 899999987 2233 3 99999999994432 356789999999999999999988543210
Q ss_pred hhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECC----------CceeEEEEEecC
Q 017777 314 VIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSA----------FNTYIMEFLKSA 366 (366)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~----------~~~~vie~~k~~ 366 (366)
....+.. ......+.++|.++|+++||+++++.... ....++.++|.+
T Consensus 205 ~~~~~~~-----~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~ 262 (265)
T 2i62_A 205 YMIGEQK-----FSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPG 262 (265)
T ss_dssp EEETTEE-----EECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC
T ss_pred EEcCCcc-----ccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEecccc
Confidence 0000000 01234578999999999999998877543 245567777753
No 82
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.51 E-value=2.8e-14 Score=130.06 Aligned_cols=141 Identities=13% Similarity=0.029 Sum_probs=93.9
Q ss_pred CCCeEEEEeCCccHHHH----HHHHhCCCCeE--EEecc-hhHHhhCCCC-------CCceE--EEccCCC-C------C
Q 017777 201 GLNSVVDVGGGIGATLN----MIISKYPSIKG--INFDL-PHVIQDAPAF-------PGVEH--VGGDMFV-S------V 257 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~~-------~~v~~--~~~D~~~-~------~ 257 (366)
+..+|||||||+|.++. .++.++|++.+ +++|. +.|++.+++. +++.+ ..++..+ + +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 45799999999997654 44556688854 99997 8887765432 34444 3444432 1 2
Q ss_pred CC--CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC-CCCccCCHH
Q 017777 258 PK--GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN-PGGKERTEQ 334 (366)
Q Consensus 258 ~~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~ 334 (366)
+. .|+|++.++||++++.+ .+|++++++|||||++++.+...+. .. ... ...+...... .....++.+
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~----~~-~~~--~~~~~~~~~~~~~~~~~~~~ 202 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGTNAKMLIIVVSGSS----GW-DKL--WKKYGSRFPQDDLCQYITSD 202 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEECTTS----HH-HHH--HHHHGGGSCCCTTCCCCCHH
T ss_pred CCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCCCcEEEEEEecCCc----cH-HHH--HHHHHHhccCCCcccCCCHH
Confidence 33 39999999999998764 7899999999999999998653211 11 100 0011000000 012456899
Q ss_pred HHHHHHHHcCCceeEE
Q 017777 335 EFRALAKAAGFQGFQV 350 (366)
Q Consensus 335 e~~~ll~~aGf~~~~~ 350 (366)
+|.++|+++||+++..
T Consensus 203 ~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 203 DLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHCCCceEEE
Confidence 9999999999998764
No 83
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.51 E-value=4.4e-13 Score=119.20 Aligned_cols=172 Identities=17% Similarity=0.203 Sum_probs=113.8
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC-C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG-D 261 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D 261 (366)
..++..+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++++|+.+ +.+.. |
T Consensus 31 ~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 107 (252)
T 1wzn_A 31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD 107 (252)
T ss_dssp HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred HHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCcc
Confidence 34454443 445689999999999999999985 568999998 8888776542 479999999987 55544 9
Q ss_pred EEEec-cccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc--CCCCCCc-hh-------------hhh---hhhcchh-
Q 017777 262 AIFIK-WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL--PVTPDTS-LA-------------SKV---VIHVDCI- 320 (366)
Q Consensus 262 ~i~~~-~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~--~~~~~~~-~~-------------~~~---~~~~~~~- 320 (366)
+|++. ..+|+++.++...+|++++++|+|||.+++.-+.. ....... +. ... .....+.
T Consensus 108 ~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (252)
T 1wzn_A 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKR 187 (252)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-------CCEEEEEEETTEEEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccchhcccCCCCeeeeccCCCeeEEEEeecccccccceeehee
Confidence 99986 56677777788899999999999999998743321 0000000 00 000 0000000
Q ss_pred -hHhhCCCC-----------ccCCHHHHHHHHHHcCCceeEEEEC-------CCceeEEEEEec
Q 017777 321 -MLAHNPGG-----------KERTEQEFRALAKAAGFQGFQVVSS-------AFNTYIMEFLKS 365 (366)
Q Consensus 321 -~~~~~~~~-----------~~~t~~e~~~ll~~aGf~~~~~~~~-------~~~~~vie~~k~ 365 (366)
......+| +.++.+++. +|.++||++++++.. .....++.++|+
T Consensus 188 ~~~~~~~~g~~~~~~~~~~~~~~~~~e~~-~l~~aGF~~~~~~~~~~~~~~~~~~r~~~va~k~ 250 (252)
T 1wzn_A 188 LVQILRPNGEVKAFLVDDELNIYTPREVR-LLAEKYFEKVKIYGNLKRELSPNDMRYWIVGIAK 250 (252)
T ss_dssp EEEEECTTSCEEEEEEEEEEECCCHHHHH-HHHTTTSSEEEEEETTBSSCCTTCCEEEEEEECC
T ss_pred eeeecccCCceeEEEEeeeeeeecHHHHH-HHHHhcCceeeeecccccccCCCCceEEEEEEee
Confidence 00001122 357999997 899999999988653 145667788775
No 84
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.50 E-value=7.8e-14 Score=126.64 Aligned_cols=132 Identities=15% Similarity=0.100 Sum_probs=102.6
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC-CEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG-DAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~~~lh~ 271 (366)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++++|+.+ +.+.. |+|++..++|+
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFIVSTVVFMF 196 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEEEECSSGGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEEEEccchhh
Confidence 35789999999999999999987 568999998 7777766542 279999999987 44433 99999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
++++....+|++++++|+|||++++......++.... ......++.+++.++++. |+++...
T Consensus 197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 197 LNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHHHHHhcC--CEEEEEE
Confidence 9988888999999999999999888776554321110 012334567889898864 8887764
No 85
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.50 E-value=1.6e-14 Score=129.81 Aligned_cols=151 Identities=13% Similarity=0.045 Sum_probs=104.1
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----------------------------------
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----------------------------------- 243 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------------------- 243 (366)
.+..+|||||||+|.++..++.... .+++++|+ +.+++.+++.
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 4567999999999987765554321 26899998 8887765421
Q ss_pred CCce-EEEccCCC--CCC-----CCCEEEeccccccC-C-hHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhh
Q 017777 244 PGVE-HVGGDMFV--SVP-----KGDAIFIKWICHDW-S-DEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKV 313 (366)
Q Consensus 244 ~~v~-~~~~D~~~--~~~-----~~D~i~~~~~lh~~-~-~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~ 313 (366)
.++. ++.+|+.+ +++ ..|+|+++.+||+. + .++...+|++++++|||||++++.+......
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~--------- 203 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS--------- 203 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE---------
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc---------
Confidence 0133 88999887 321 23999999999974 2 3566789999999999999999987543221
Q ss_pred hhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECC----------CceeEEEEEec
Q 017777 314 VIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSA----------FNTYIMEFLKS 365 (366)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~----------~~~~vie~~k~ 365 (366)
....-. ......++.++|.++|+++||++++..... ..+.++.++|.
T Consensus 204 -~~~g~~----~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 260 (263)
T 2a14_A 204 -YMVGKR----EFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 260 (263)
T ss_dssp -EEETTE----EEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred -ceeCCe----EeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEec
Confidence 000000 001223589999999999999998876532 25567778774
No 86
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.49 E-value=1.6e-13 Score=122.11 Aligned_cols=152 Identities=22% Similarity=0.261 Sum_probs=104.7
Q ss_pred HHHHHhccCCCCCCeEEEEeCCc--cHHHHHH-HHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCC--
Q 017777 190 KKILENYKGFEGLNSVVDVGGGI--GATLNMI-ISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSV-- 257 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~--G~~~~~l-~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~-- 257 (366)
...+..+..-.+..+|||||||+ +..+..+ .+..|+.+++++|. |.|++.+++. .+++++++|+.++.
T Consensus 67 ~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~ 146 (277)
T 3giw_A 67 NRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASI 146 (277)
T ss_dssp HHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHH
T ss_pred HHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhh
Confidence 33444333123568999999997 3344444 44579999999998 9999888642 36899999998721
Q ss_pred ---C---C-CC-----EEEeccccccCChHH-HHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhh
Q 017777 258 ---P---K-GD-----AIFIKWICHDWSDEH-CVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAH 324 (366)
Q Consensus 258 ---~---~-~D-----~i~~~~~lh~~~~~~-~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (366)
+ . .| +++++.+||++++++ ...+|++++++|+|||+|++.+...+..+ .......+.+...
T Consensus 147 l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p-----~~~~~~~~~~~~~- 220 (277)
T 3giw_A 147 LDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP-----QEVGRVAREYAAR- 220 (277)
T ss_dssp HTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH-----HHHHHHHHHHHHT-
T ss_pred hcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH-----HHHHHHHHHHHhc-
Confidence 1 1 13 688999999999875 46899999999999999999987654321 0111112222211
Q ss_pred CCCCccCCHHHHHHHHHHcCCceeE
Q 017777 325 NPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 325 ~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
......||.+|+.++|. ||++++
T Consensus 221 g~p~~~rs~~ei~~~f~--Glelve 243 (277)
T 3giw_A 221 NMPMRLRTHAEAEEFFE--GLELVE 243 (277)
T ss_dssp TCCCCCCCHHHHHHTTT--TSEECT
T ss_pred CCCCccCCHHHHHHHhC--CCcccC
Confidence 11345689999999995 998653
No 87
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.49 E-value=6.6e-14 Score=134.06 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=106.9
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCC-----C-CCC-C
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMF-----V-SVP-K 259 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~-----~-~~~-~ 259 (366)
....++..+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++......+. . +++ .
T Consensus 95 ~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~ 170 (416)
T 4e2x_A 95 LARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEG 170 (416)
T ss_dssp HHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCC
Confidence 3456666666 667789999999999999999985 458999998 7888887754 3333332221 1 222 2
Q ss_pred -CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHH
Q 017777 260 -GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRA 338 (366)
Q Consensus 260 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 338 (366)
.|+|++.++|||+++. ..+|++++++|||||++++..+.... ......+.... ..+...++.++|.+
T Consensus 171 ~fD~I~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~---------~~~~~~~~~~~-~~~~~~~s~~~l~~ 238 (416)
T 4e2x_A 171 PANVIYAANTLCHIPYV--QSVLEGVDALLAPDGVFVFEDPYLGD---------IVAKTSFDQIF-DEHFFLFSATSVQG 238 (416)
T ss_dssp CEEEEEEESCGGGCTTH--HHHHHHHHHHEEEEEEEEEEEECHHH---------HHHHTCGGGCS-TTCCEECCHHHHHH
T ss_pred CEEEEEECChHHhcCCH--HHHHHHHHHHcCCCeEEEEEeCChHH---------hhhhcchhhhh-hhhhhcCCHHHHHH
Confidence 3999999999999864 58899999999999999997543211 00000010000 12445679999999
Q ss_pred HHHHcCCceeEEEECC
Q 017777 339 LAKAAGFQGFQVVSSA 354 (366)
Q Consensus 339 ll~~aGf~~~~~~~~~ 354 (366)
+++++||+++++...+
T Consensus 239 ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 239 MAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHTTEEEEEEEEEC
T ss_pred HHHHcCCEEEEEEEcc
Confidence 9999999999887754
No 88
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.48 E-value=3.2e-14 Score=129.66 Aligned_cols=154 Identities=18% Similarity=0.017 Sum_probs=106.3
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CC-CCC--CEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SV-PKG--DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~-~~~--D~i~~~ 266 (366)
..+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++++|+.+ ++ +.. |+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 356789999999999999988775 4558999998 7777766542 368999999987 55 333 999999
Q ss_pred ccccc--CChHHHHHHHHHHHHhCCCCcEEEEEccccCCC---------CCCc---------hhhh-hhhhcchhhHhh-
Q 017777 267 WICHD--WSDEHCVKFLKNCYEALPVNGKVIVAESILPVT---------PDTS---------LASK-VVIHVDCIMLAH- 324 (366)
Q Consensus 267 ~~lh~--~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~---------~~~~---------~~~~-~~~~~~~~~~~~- 324 (366)
+++|+ .+.++...+|++++++|+|||++++........ .... ..+. ....+.+.....
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 220 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSV 220 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhh
Confidence 99988 566777899999999999999999987532110 0000 0000 000000000000
Q ss_pred -CCCCccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 325 -NPGGKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 325 -~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
......++.++|.++|+++||+++++...
T Consensus 221 ~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 221 NNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp SSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred cCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 00123568999999999999999988664
No 89
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.48 E-value=5.3e-13 Score=111.67 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=95.2
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCCC--CCEEEeccccccCChH--
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVPK--GDAIFIKWICHDWSDE-- 275 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~--~D~i~~~~~lh~~~~~-- 275 (366)
+..+|||||||+|.++..+++.. +++++|+ +.+++. ..+++++++|+.++.+. .|+|+++..+|..++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~ 96 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPI 96 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTT
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCcccc
Confidence 45699999999999999999876 8999998 888876 56899999999886553 3999999888865443
Q ss_pred -----HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEE
Q 017777 276 -----HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQV 350 (366)
Q Consensus 276 -----~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 350 (366)
+...+++++.+.+ |||++++.+... ...+++.++++++||+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~l~~~gf~~~~~ 146 (170)
T 3q87_B 97 IGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLARLEERGYGTRIL 146 (170)
T ss_dssp TBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHHHHHTTCEEEEE
T ss_pred ccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHHHHHCCCcEEEE
Confidence 3457889999999 999999976321 13578899999999998877
Q ss_pred EECC
Q 017777 351 VSSA 354 (366)
Q Consensus 351 ~~~~ 354 (366)
....
T Consensus 147 ~~~~ 150 (170)
T 3q87_B 147 KVRK 150 (170)
T ss_dssp EEEE
T ss_pred Eeec
Confidence 6653
No 90
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.47 E-value=5.3e-13 Score=117.29 Aligned_cols=142 Identities=14% Similarity=0.113 Sum_probs=101.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhh----CCCCCCceEEEccCCC-----CCCCC-CEEEecc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQD----APAFPGVEHVGGDMFV-----SVPKG-DAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~~~~v~~~~~D~~~-----~~~~~-D~i~~~~ 267 (366)
+.+..+|||||||+|.++..+++.++..+++++|. +.+++. ++..+++.++.+|+.. +.+.. |+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 55678999999999999999999988779999998 766654 3444789999999875 22223 9988
Q ss_pred ccccCChH-HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 268 ICHDWSDE-HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 268 ~lh~~~~~-~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
|++++. ....+|+++.++|+|||++++. ........... .. ....+++. +|+++||+
T Consensus 149 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~---------~~---------~~~~~~l~-~l~~~Gf~ 206 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKD---------PK---------EIFKEQKE-ILEAGGFK 206 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSC---------HH---------HHHHHHHH-HHHHHTEE
T ss_pred --EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCC---------HH---------HhhHHHHH-HHHHCCCE
Confidence 444443 3457799999999999999997 21111100000 00 01246777 89999999
Q ss_pred eeEEEECCCc---eeEEEEEec
Q 017777 347 GFQVVSSAFN---TYIMEFLKS 365 (366)
Q Consensus 347 ~~~~~~~~~~---~~vie~~k~ 365 (366)
.++....... ..++.++|+
T Consensus 207 ~~~~~~~~~~~~~~~~v~~~k~ 228 (230)
T 1fbn_A 207 IVDEVDIEPFEKDHVMFVGIWE 228 (230)
T ss_dssp EEEEEECTTTSTTEEEEEEEEC
T ss_pred EEEEEccCCCccceEEEEEEeC
Confidence 9998887544 677788775
No 91
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.46 E-value=1.9e-13 Score=117.43 Aligned_cols=140 Identities=8% Similarity=0.019 Sum_probs=102.2
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCC--C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPK--G 260 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~--~ 260 (366)
..++..++ .. +|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +++. .
T Consensus 22 ~~~~~~~~---~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~f 95 (202)
T 2kw5_A 22 VSVANQIP---QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAW 95 (202)
T ss_dssp HHHHHHSC---SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTC
T ss_pred HHHHHhCC---CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCc
Confidence 34444443 34 9999999999999998885 568999998 7787777643 378999999987 5553 3
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|+|++. +++++.++...+|++++++|+|||++++.+....... ...... ......++.+++.++|
T Consensus 96 D~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~---------~~~~~~----~~~~~~~~~~~l~~~l 160 (202)
T 2kw5_A 96 EGIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ---------YNTGGP----KDLDLLPKLETLQSEL 160 (202)
T ss_dssp SEEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG---------GTSCCS----SSGGGCCCHHHHHHHC
T ss_pred cEEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccc---------CCCCCC----CcceeecCHHHHHHHh
Confidence 999985 3455667788999999999999999999887543310 000000 0012357899999999
Q ss_pred HHcCCceeEEEE
Q 017777 341 KAAGFQGFQVVS 352 (366)
Q Consensus 341 ~~aGf~~~~~~~ 352 (366)
+ ||+++++..
T Consensus 161 ~--Gf~v~~~~~ 170 (202)
T 2kw5_A 161 P--SLNWLIANN 170 (202)
T ss_dssp S--SSCEEEEEE
T ss_pred c--CceEEEEEE
Confidence 9 999987654
No 92
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.45 E-value=1.7e-13 Score=118.14 Aligned_cols=130 Identities=14% Similarity=0.043 Sum_probs=104.0
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCCC-CEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPKG-DAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~~-D~i~~~~~lh~ 271 (366)
.+..+|||||||+|.++..+++ .+..+++++|+ +.+++.+++. .+++++.+|+.+..+.. |+|++...+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4568999999999999999776 46679999998 7787776542 34999999998744444 99999887764
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
...+++++.++|+|||++++.+.... +.+++.++++++||+++++.
T Consensus 138 -----~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -----HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHHHHHHHHcCCceEEee
Confidence 35889999999999999999654321 25678899999999999988
Q ss_pred ECCCceeEEEEEe
Q 017777 352 SSAFNTYIMEFLK 364 (366)
Q Consensus 352 ~~~~~~~vie~~k 364 (366)
..+.+..++..++
T Consensus 184 ~~~~w~~~~~~~~ 196 (205)
T 3grz_A 184 RAGRWIGLAISRK 196 (205)
T ss_dssp EETTEEEEEEEEC
T ss_pred ccCCEEEEEEecc
Confidence 8877777777665
No 93
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.45 E-value=2.9e-14 Score=123.88 Aligned_cols=99 Identities=14% Similarity=0.193 Sum_probs=82.3
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCCCCCC-C-CEEEecccccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFVSVPK-G-DAIFIKWICHD 271 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~~~~~-~-D~i~~~~~lh~ 271 (366)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++++|+.+..+. . |+|++.+++|+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4567899999999999999999875 47899998 777766543 35799999999873233 3 99999999999
Q ss_pred CCh-HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 272 WSD-EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 272 ~~~-~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+++ +....+|++++++|+|||++++...
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 986 4556899999999999999999765
No 94
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.44 E-value=4.8e-14 Score=128.31 Aligned_cols=137 Identities=12% Similarity=0.093 Sum_probs=94.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----C-------------------------------
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----P------------------------------- 244 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~------------------------------- 244 (366)
+..+|||||||+|.+. .++...+..+++++|+ +.+++.+++. .
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 5679999999999943 3444445569999998 8887755431 0
Q ss_pred -CceEEEccCCC--C-----CCC--CCEEEeccccccCChH--HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhh
Q 017777 245 -GVEHVGGDMFV--S-----VPK--GDAIFIKWICHDWSDE--HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASK 312 (366)
Q Consensus 245 -~v~~~~~D~~~--~-----~~~--~D~i~~~~~lh~~~~~--~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~ 312 (366)
.++++.+|+.+ + ++. .|+|+++.+||+++.. +...+|++++++|||||+|++.+......
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~-------- 221 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW-------- 221 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE--------
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcce--------
Confidence 13466668875 2 222 3999999999985433 56799999999999999999986432210
Q ss_pred hhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 313 VVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
....+. ......++.++|.++|+++||+++++..
T Consensus 222 -~~~~~~-----~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 255 (289)
T 2g72_A 222 -YLAGEA-----RLTVVPVSEEEVREALVRSGYKVRDLRT 255 (289)
T ss_dssp -EEETTE-----EEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred -EEcCCe-----eeeeccCCHHHHHHHHHHcCCeEEEeeE
Confidence 000000 0012346899999999999999887654
No 95
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.44 E-value=1.1e-12 Score=112.99 Aligned_cols=122 Identities=13% Similarity=0.113 Sum_probs=97.3
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC---C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP---K 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~---~ 259 (366)
..++..+. ..+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++. ++++++.+|+.+..+ .
T Consensus 30 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 30 AVTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 34555565 66788999999999999999999999999999998 8888777642 689999999876332 3
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
.|+|++...++ +...+++++.++|+|||++++..... .+.+++.++
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------------------~~~~~~~~~ 154 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL-----------------------------DTLTKAVEF 154 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH-----------------------------HHHHHHHHH
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc-----------------------------ccHHHHHHH
Confidence 49999988876 23588999999999999999965321 025677889
Q ss_pred HHHcCCc
Q 017777 340 AKAAGFQ 346 (366)
Q Consensus 340 l~~aGf~ 346 (366)
++++||.
T Consensus 155 l~~~g~~ 161 (204)
T 3e05_A 155 LEDHGYM 161 (204)
T ss_dssp HHHTTCE
T ss_pred HHHCCCc
Confidence 9999983
No 96
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.44 E-value=2.6e-13 Score=118.08 Aligned_cols=142 Identities=14% Similarity=0.107 Sum_probs=94.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhh----CCC------CCCceEEEccCCC-CCCCC-CEEEe
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQD----APA------FPGVEHVGGDMFV-SVPKG-DAIFI 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~~v~~~~~D~~~-~~~~~-D~i~~ 265 (366)
..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++++|+.+ +++.. |.|++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 45678999999999999999999999999999998 765553 222 2589999999987 55533 66653
Q ss_pred cc---ccc--cCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 266 KW---ICH--DWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 266 ~~---~lh--~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
.. .+| ++++. ..+|++++++|||||++++......-.... . ...+ .......+..+++.+++
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~---~~~~-----~~~~~~~~~~~~l~~~l 171 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVALNLHAWRPSV---P---EVGE-----HPEPTPDSADEWLAPRY 171 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEEEEGGGBTTBC---G---GGTT-----CCCCCHHHHHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEEeccccccccc---c---cccc-----CCccchHHHHHHHHHHH
Confidence 22 221 33333 478999999999999999943321111000 0 0000 00011122345688899
Q ss_pred HHcCCceeEEEEC
Q 017777 341 KAAGFQGFQVVSS 353 (366)
Q Consensus 341 ~~aGf~~~~~~~~ 353 (366)
+++||++.++...
T Consensus 172 ~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 172 AEAGWKLADCRYL 184 (218)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHcCCCceeeecc
Confidence 9999999887654
No 97
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.43 E-value=6.8e-13 Score=112.66 Aligned_cols=142 Identities=17% Similarity=0.183 Sum_probs=107.7
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------C--CceEEEccCCCCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------P--GVEHVGGDMFVSVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~D~~~~~~~ 259 (366)
.+.+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. . +++++.+|+.++.+.
T Consensus 41 ~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (194)
T 1dus_A 41 TKILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117 (194)
T ss_dssp HHHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred HHHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence 345566665 567789999999999999999887 678999998 7777766542 3 499999999875443
Q ss_pred -C-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH
Q 017777 260 -G-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR 337 (366)
Q Consensus 260 -~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 337 (366)
. |+|++...+|+ ..+....+++++.++|+|||++++...... ...++.
T Consensus 118 ~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 167 (194)
T 1dus_A 118 RKYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ-----------------------------GAKSLA 167 (194)
T ss_dssp SCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTH-----------------------------HHHHHH
T ss_pred CCceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCC-----------------------------ChHHHH
Confidence 3 99999888775 445667999999999999999999865321 023466
Q ss_pred HHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 338 ALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
+.+++. |..+++.....++.++.++|
T Consensus 168 ~~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 168 KYMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHHH-hcceEEEecCCcEEEEEEee
Confidence 777777 66677777667778877776
No 98
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.43 E-value=3.6e-13 Score=125.83 Aligned_cols=113 Identities=13% Similarity=0.246 Sum_probs=90.3
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC---------------CCCceEEEcc
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA---------------FPGVEHVGGD 252 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~D 252 (366)
+..++..+. +.+..+|||||||+|..+..++...+..+++++|+ +.+++.|++ ..+|+++++|
T Consensus 162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 445666666 77889999999999999999998887667999998 666655542 2689999999
Q ss_pred CCC-CCC----CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCC
Q 017777 253 MFV-SVP----KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTP 305 (366)
Q Consensus 253 ~~~-~~~----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~ 305 (366)
+++ +++ ..|+|+++++++. ++....|+++.+.|||||+|++.|.+.+.+.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F~---pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAFG---PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTCC---HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEcccccC---chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 998 553 3599998877642 4556788999999999999999999887653
No 99
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.43 E-value=1.1e-13 Score=119.58 Aligned_cols=148 Identities=14% Similarity=0.015 Sum_probs=95.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCC----
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVP---- 258 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~---- 258 (366)
...+++.+....+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++++|+.++++
T Consensus 18 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 97 (215)
T 4dzr_A 18 VEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAE 97 (215)
T ss_dssp HHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhh
Confidence 344555554225678999999999999999999999999999998 8888888754 168888888876433
Q ss_pred ---CCCEEEecccccc------CChHHH------------------HHHHHHHHHhCCCCcEEEEEccccCCCCCCchhh
Q 017777 259 ---KGDAIFIKWICHD------WSDEHC------------------VKFLKNCYEALPVNGKVIVAESILPVTPDTSLAS 311 (366)
Q Consensus 259 ---~~D~i~~~~~lh~------~~~~~~------------------~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~ 311 (366)
..|+|+++..+|. ++.+.. ..++++++++|+|||++++++...
T Consensus 98 ~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------- 167 (215)
T 4dzr_A 98 RGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH---------- 167 (215)
T ss_dssp TTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT----------
T ss_pred ccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC----------
Confidence 2399999654433 222211 688999999999999966654311
Q ss_pred hhhhhcchhhHhhCCCCccCCHHHHHHHHH--HcCCceeEEEECC-CceeEEEEEec
Q 017777 312 KVVIHVDCIMLAHNPGGKERTEQEFRALAK--AAGFQGFQVVSSA-FNTYIMEFLKS 365 (366)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~--~aGf~~~~~~~~~-~~~~vie~~k~ 365 (366)
...+++.++++ ++||..+++.... +...++.++|.
T Consensus 168 -------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 168 -------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTRE 205 (215)
T ss_dssp -------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEEC
T ss_pred -------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEc
Confidence 12567788888 9999988777754 45566666654
No 100
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.43 E-value=3.7e-13 Score=116.39 Aligned_cols=137 Identities=13% Similarity=0.091 Sum_probs=97.6
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCC-eEEEecc-hhHHhhCCCC-CCceEEEccCCC-CCCCC--CEEEe
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSI-KGINFDL-PHVIQDAPAF-PGVEHVGGDMFV-SVPKG--DAIFI 265 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~~ 265 (366)
++..+. .+..+|||||||+|.++..+ +. +++++|+ +.+++.+++. ++++++.+|+.+ +++.. |+|++
T Consensus 29 ~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 101 (211)
T 2gs9_A 29 ALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLL 101 (211)
T ss_dssp HHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEE
T ss_pred HHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEE
Confidence 444443 26789999999999998877 45 8999998 7888777643 689999999887 66543 99999
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcC
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAG 344 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 344 (366)
.+++|++++. ..+|++++++|+|||++++.+...... . ....................++.+++.++|+ |
T Consensus 102 ~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 102 FTTLEFVEDV--ERVLLEARRVLRPGGALVVGVLEALSP----W-AALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp ESCTTTCSCH--HHHHHHHHHHEEEEEEEEEEEECTTSH----H-HHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred cChhhhcCCH--HHHHHHHHHHcCCCCEEEEEecCCcCc----H-HHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 9999999865 488999999999999999988643321 0 0000000000000001244579999999999 7
No 101
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.43 E-value=8.9e-13 Score=115.44 Aligned_cols=146 Identities=12% Similarity=0.008 Sum_probs=91.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc--hhHHhhC---CCC------CCceEEEccCCC-CCCCCCEEEecc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL--PHVIQDA---PAF------PGVEHVGGDMFV-SVPKGDAIFIKW 267 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a---~~~------~~v~~~~~D~~~-~~~~~D~i~~~~ 267 (366)
.+..+|||||||+|.++..+++..|+.+++++|+ +.+++.| ++. +++.++.+|+.+ +....|+|.+..
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 4567999999999999999998889999999997 4454443 432 579999999875 221126555554
Q ss_pred ccccCChHH------HHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHH
Q 017777 268 ICHDWSDEH------CVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAK 341 (366)
Q Consensus 268 ~lh~~~~~~------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 341 (366)
+.+.|+... ...+|++++++|||||++++........ .. .+. ....... ........+++.++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~--~~~--~~~~~~~----~~~~~~~~~el~~~l~ 173 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSY-EE--AEI--KKRGLPL----LSKAYFLSEQYKAELS 173 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------------CCHHHHHSHHHHHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccc-hh--chh--hhcCCCC----CChhhcchHHHHHHHH
Confidence 444443211 1368999999999999999954433221 00 000 0000000 0000011235999999
Q ss_pred HcCCceeEEEECC
Q 017777 342 AAGFQGFQVVSSA 354 (366)
Q Consensus 342 ~aGf~~~~~~~~~ 354 (366)
++||++......+
T Consensus 174 ~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 174 NSGFRIDDVKELD 186 (225)
T ss_dssp HHTCEEEEEEEEC
T ss_pred HcCCCeeeeeecC
Confidence 9999988776553
No 102
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.41 E-value=1.6e-12 Score=117.44 Aligned_cols=144 Identities=17% Similarity=0.155 Sum_probs=108.0
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC--
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK-- 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~-- 259 (366)
...+++.++ .+..+|||||||+|..+..++..+|+.+++++|+ +.+++.++++ ++++++++|++++.+.
T Consensus 99 ~~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 176 (276)
T 2b3t_A 99 VEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQ 176 (276)
T ss_dssp HHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCC
T ss_pred HHHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCC
Confidence 344555443 3467999999999999999999999999999998 7887776542 4799999999875532
Q ss_pred CCEEEecc-------------ccccCCh----------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhh
Q 017777 260 GDAIFIKW-------------ICHDWSD----------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIH 316 (366)
Q Consensus 260 ~D~i~~~~-------------~lh~~~~----------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 316 (366)
.|+|+++. ++++.|. .....+++.+.+.|+|||++++...
T Consensus 177 fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~----------------- 239 (276)
T 2b3t_A 177 FAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG----------------- 239 (276)
T ss_dssp EEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-----------------
T ss_pred ccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------------
Confidence 39999973 4433331 3457899999999999999998521
Q ss_pred cchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEEC-CCceeEEEEEe
Q 017777 317 VDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSS-AFNTYIMEFLK 364 (366)
Q Consensus 317 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~~k 364 (366)
..+.+++.++++++||+.+++... .+...++.++|
T Consensus 240 -------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 -------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp -------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred -------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 013678899999999998877765 45556666654
No 103
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.39 E-value=1.2e-12 Score=109.86 Aligned_cols=101 Identities=16% Similarity=0.235 Sum_probs=80.8
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------C-CceEEEccCCCCCC----
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------P-GVEHVGGDMFVSVP---- 258 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~~~~---- 258 (366)
.++..+. ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. + ++ ++.+|..+.++
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 3455555 56678999999999999999999999999999998 7777776531 3 67 88888866333
Q ss_pred CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 259 KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 259 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
..|+|++...+|+ ..+++++.++|+|||++++.+.
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence 2499999999987 4689999999999999998764
No 104
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.38 E-value=8.3e-14 Score=123.00 Aligned_cols=107 Identities=14% Similarity=0.105 Sum_probs=77.9
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC---CCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV---SVP 258 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~---~~~ 258 (366)
.+..+..... .++.+|||||||+|..+..+++..|. +++++|+ |.+++.+++. .+++++.+|... +++
T Consensus 49 ~m~~~a~~~~--~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~ 125 (236)
T 3orh_A 49 YMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLP 125 (236)
T ss_dssp HHHHHHHHHT--TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSC
T ss_pred HHHHHHHhhc--cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhccccc
Confidence 3344444332 45689999999999999999887664 7899998 8888877642 467888887643 344
Q ss_pred CC--CEEEe-----ccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 259 KG--DAIFI-----KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 259 ~~--D~i~~-----~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.. |.|++ ...+++++ +...++++++++|||||++++.+.
T Consensus 126 ~~~FD~i~~D~~~~~~~~~~~~--~~~~~~~e~~rvLkPGG~l~f~~~ 171 (236)
T 3orh_A 126 DGHFDGILYDTYPLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp TTCEEEEEECCCCCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEECCH
T ss_pred ccCCceEEEeeeecccchhhhc--chhhhhhhhhheeCCCCEEEEEec
Confidence 33 77754 45555544 445889999999999999998764
No 105
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.36 E-value=1.3e-12 Score=116.40 Aligned_cols=107 Identities=10% Similarity=0.069 Sum_probs=81.8
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CC------C-C
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SV------P-K 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~------~-~ 259 (366)
...++..++ ..+..+|||||||+|.++..++++ +.+++++|+ +.+++.+++...-.++..++.+ +. + .
T Consensus 34 ~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 34 RENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 445666665 677889999999999999999986 468999998 8888877643111123333322 11 2 2
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.|+|++..++|+++.++...+++++.++| |||++++...
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 39999999999999888889999999999 9999998754
No 106
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.36 E-value=3.3e-12 Score=127.93 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=87.2
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCC------------CCCceEEEccCCC-C
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPA------------FPGVEHVGGDMFV-S 256 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~D~~~-~ 256 (366)
++..+. ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ ..+++++++|+.+ +
T Consensus 713 LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp 791 (950)
T 3htx_A 713 ALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD 791 (950)
T ss_dssp HHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC
T ss_pred HHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC
Confidence 344443 3467899999999999999999988 5579999998 888877744 2579999999987 5
Q ss_pred CCC--CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 257 VPK--GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 257 ~~~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+. .|+|++..++||++++....+++++.++|+|| .++|..+
T Consensus 792 ~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 792 SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp TTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred cccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 543 39999999999999988888999999999999 7777654
No 107
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.34 E-value=9.3e-13 Score=118.33 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=79.6
Q ss_pred CCCeEEEEeCCccH----HHHHHHHhCC----CCeEEEecc-hhHHhhCCCC----------------------------
Q 017777 201 GLNSVVDVGGGIGA----TLNMIISKYP----SIKGINFDL-PHVIQDAPAF---------------------------- 243 (366)
Q Consensus 201 ~~~~vLDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 243 (366)
+..+|+|+|||+|. ++..|++.++ +.++++.|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5555666645 468999998 8888776531
Q ss_pred ---------CCceEEEccCCC-CCC--CC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 244 ---------PGVEHVGGDMFV-SVP--KG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 244 ---------~~v~~~~~D~~~-~~~--~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
.+|.|.++|+.+ +++ .. |+|+|.++|++++++...+++++++++|+|||+|++-
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 258999999988 565 23 9999999999999888889999999999999999883
No 108
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.34 E-value=1.3e-12 Score=117.97 Aligned_cols=125 Identities=14% Similarity=0.122 Sum_probs=92.9
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCC----C---CCceEEEccCCCCCCCC-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPA----F---PGVEHVGGDMFVSVPKG- 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~---~~v~~~~~D~~~~~~~~- 260 (366)
.++..+. +.+..+|||+|||+|.++..+++. .|+.+++++|+ +.+++.+++ . ++++++.+|+.++.+..
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4455555 667789999999999999999998 78889999998 777765543 2 57999999998865543
Q ss_pred -CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
|+|++ ++++. ..+|+++.++|+|||++++...... ..+++.+.
T Consensus 180 fD~Vi~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~-----------------------------~~~~~~~~ 223 (275)
T 1yb2_A 180 YDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVLS 223 (275)
T ss_dssp EEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHHH
T ss_pred ccEEEE-----cCcCH--HHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHH
Confidence 99987 33443 3789999999999999999763210 13456677
Q ss_pred HHHcCCceeEEEE
Q 017777 340 AKAAGFQGFQVVS 352 (366)
Q Consensus 340 l~~aGf~~~~~~~ 352 (366)
++++||+.+++..
T Consensus 224 l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 224 LSASGMHHLETVE 236 (275)
T ss_dssp SGGGTEEEEEEEE
T ss_pred HHHCCCeEEEEEE
Confidence 8888998877655
No 109
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.34 E-value=3.6e-12 Score=117.23 Aligned_cols=98 Identities=21% Similarity=0.193 Sum_probs=79.9
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------------CCceEEEccCCC-C----CC--C
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------------PGVEHVGGDMFV-S----VP--K 259 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~D~~~-~----~~--~ 259 (366)
+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++++|+.+ + ++ .
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 5689999999999999988874 5678999998 7777766532 368999999987 4 32 2
Q ss_pred -C-CEEEeccccccC--ChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 -G-DAIFIKWICHDW--SDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 -~-D~i~~~~~lh~~--~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. |+|++.+++|+. +.++...+|++++++|+|||++++..+
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 3 999999999987 345667999999999999999999765
No 110
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.34 E-value=1.5e-12 Score=119.03 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=75.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----C--------CceEEEccCCC---------CCC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----P--------GVEHVGGDMFV---------SVP 258 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~--------~v~~~~~D~~~---------~~~ 258 (366)
...+|||||||+|..+..++.. ...+++++|+ +.+++.|++. . ++++.+.|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 3579999999999877666653 3458999998 8888887653 1 15677888732 234
Q ss_pred CC--CEEEeccccccC-ChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 259 KG--DAIFIKWICHDW-SDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 259 ~~--D~i~~~~~lh~~-~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+ |+|++..++|+. +.++...+|++++++|||||++++..+
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 33 999999999874 444567999999999999999998765
No 111
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.33 E-value=3.3e-12 Score=108.06 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=93.2
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC--CCC-CC-CEEEecc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV--SVP-KG-DAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~~~-~~-D~i~~~~ 267 (366)
+.+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. ++++++..|... +.+ .. |+|++..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 456789999999999999999987 678999998 8888877642 679999877654 133 32 9998763
Q ss_pred -ccccC------ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 268 -ICHDW------SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 268 -~lh~~------~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
.+++. ..+....+|+++.++|||||++++.......... .......+|.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------------------~~~~~~~~~~~~l 156 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGD---------------------MEKDAVLEYVIGL 156 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------C---------------------HHHHHHHHHHHHS
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCH---------------------HHHHHHHHHHHhC
Confidence 32220 2245568899999999999999997653221100 0001133455555
Q ss_pred HHcCCceeEEEECC---CceeEEEEEec
Q 017777 341 KAAGFQGFQVVSSA---FNTYIMEFLKS 365 (366)
Q Consensus 341 ~~aGf~~~~~~~~~---~~~~vie~~k~ 365 (366)
...+|.+....... ....++.+.|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 184 (185)
T 3mti_A 157 DQRVFTAMLYQPLNQINTPPFLVMLEKL 184 (185)
T ss_dssp CTTTEEEEEEEESSCSSCCCEEEEEEEC
T ss_pred CCceEEEEEehhhccCCCCCeEEEEEec
Confidence 66678887766653 33344444443
No 112
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.33 E-value=6.4e-12 Score=108.97 Aligned_cols=98 Identities=22% Similarity=0.284 Sum_probs=77.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-C--CCCC--CEEEeccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-S--VPKG--DAIFIKWI 268 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~~--D~i~~~~~ 268 (366)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+ + ++.+ |+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 457899999999999999999999999999998 7887776542 689999999986 3 4433 99998765
Q ss_pred cccCChH------HHHHHHHHHHHhCCCCcEEEEEc
Q 017777 269 CHDWSDE------HCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 269 lh~~~~~------~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.++.... ....+|+++.++|+|||.+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 4322211 12478999999999999998853
No 113
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.32 E-value=1.4e-11 Score=106.69 Aligned_cols=137 Identities=12% Similarity=0.091 Sum_probs=94.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhH----HhhCCCCCCceEEEccCCCC-----CCCC-CEEEecc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHV----IQDAPAFPGVEHVGGDMFVS-----VPKG-DAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~D~~~~-----~~~~-D~i~~~~ 267 (366)
..++.+|||||||+|..+..+++..++.+++++|+ +.+ .+.+++..++.++.+|+..+ .+.. |+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45678999999999999999999988778999998 553 44454456888888888652 2333 999886
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH----HHHHHc
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR----ALAKAA 343 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~----~ll~~a 343 (366)
+.++ .+...+|++++++|||||++++.-...+. + . ..+.+++. +.++++
T Consensus 134 ~~~~---~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------------~---------~-~~~~~~~~~~~~~~l~~~ 186 (210)
T 1nt2_A 134 IAQK---NQIEILKANAEFFLKEKGEVVIMVKARSI--------------D---------S-TAEPEEVFKSVLKEMEGD 186 (210)
T ss_dssp CCST---THHHHHHHHHHHHEEEEEEEEEEEEHHHH--------------C---------T-TSCHHHHHHHHHHHHHTT
T ss_pred ccCh---hHHHHHHHHHHHHhCCCCEEEEEEecCCc--------------c---------c-cCCHHHHHHHHHHHHHhh
Confidence 3222 33446699999999999999997322100 0 0 01122321 237888
Q ss_pred CCceeEEEECC---CceeEEEEEe
Q 017777 344 GFQGFQVVSSA---FNTYIMEFLK 364 (366)
Q Consensus 344 Gf~~~~~~~~~---~~~~vie~~k 364 (366)
|++++..... ..+.++.++|
T Consensus 187 -f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 187 -FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp -SEEEEEEECTTTCTTEEEEEEEE
T ss_pred -cEEeeeecCCCCCCCcEEEEEEc
Confidence 9999988773 3556666665
No 114
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.31 E-value=1.5e-12 Score=114.80 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=76.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC---CCCCC--CEEEe-cc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV---SVPKG--DAIFI-KW 267 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~---~~~~~--D~i~~-~~ 267 (366)
.+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4568999999999999999966443 38899998 8887766542 568999999765 45543 99998 55
Q ss_pred c--cccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 268 I--CHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 268 ~--lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
. .+.+.......++++++++|||||++++.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 4 34444445568899999999999999998754
No 115
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.31 E-value=3.5e-12 Score=111.33 Aligned_cols=133 Identities=15% Similarity=0.129 Sum_probs=93.0
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhC----CCCCCceEEEccCCCC----CCC-C-CEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDA----PAFPGVEHVGGDMFVS----VPK-G-DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~D~~~~----~~~-~-D~i~~~ 266 (366)
++++.+|||+|||+|.++..+++.. |+-+++++|. +.+++.+ ++.+++..+.+|...+ ... . |+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 6788999999999999999999875 8889999997 7776544 4457899999988762 122 2 877653
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
+++. ++...+++++++.|||||+++|.......+... +... ..++-.+.|+++||+
T Consensus 155 --~~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~------------------p~~~--~~~~ev~~L~~~GF~ 210 (233)
T 4df3_A 155 --VAQP--EQAAIVVRNARFFLRDGGYMLMAIKARSIDVTT------------------EPSE--VYKREIKTLMDGGLE 210 (233)
T ss_dssp --CCCT--THHHHHHHHHHHHEEEEEEEEEEEECCHHHHHT------------------CCCH--HHHHHHHHHHHTTCC
T ss_pred --ccCC--hhHHHHHHHHHHhccCCCEEEEEEecccCCCCC------------------ChHH--HHHHHHHHHHHCCCE
Confidence 3222 234578999999999999999875322111000 0000 122335678899999
Q ss_pred eeEEEECCC
Q 017777 347 GFQVVSSAF 355 (366)
Q Consensus 347 ~~~~~~~~~ 355 (366)
+++...+..
T Consensus 211 l~e~i~L~p 219 (233)
T 4df3_A 211 IKDVVHLDP 219 (233)
T ss_dssp EEEEEECTT
T ss_pred EEEEEccCC
Confidence 999888753
No 116
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.31 E-value=3e-12 Score=110.59 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=82.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCCC--CEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPKG--DAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~ 271 (366)
.+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+ +++.. |+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 45689999999999999999998654 8999997 777766553 2689999999987 66543 99999998876
Q ss_pred CC-------------hHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 272 WS-------------DEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 272 ~~-------------~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
+. .++...+|+++.++|+|||++++.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 54 345679999999999999999998753
No 117
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.30 E-value=1.6e-11 Score=107.34 Aligned_cols=142 Identities=15% Similarity=0.094 Sum_probs=97.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHh----hCCCCCCceEEEccCCCC-----CCCC-CEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQ----DAPAFPGVEHVGGDMFVS-----VPKG-DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~----~a~~~~~v~~~~~D~~~~-----~~~~-D~i~~~ 266 (366)
+.+..+|||+|||+|.++..+++.+ |+.+++++|. +.+++ .+++.++++++.+|+.++ .+.. |+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4567899999999999999999885 5678999997 64443 444457899999999762 2233 999965
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
.. .......++++++++|+|||++++. .......... . ......+++.++ .++ |+
T Consensus 151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~---------~---------~~~~~~~~l~~l-~~~-f~ 205 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTK---------E---------PEQVFREVEREL-SEY-FE 205 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTS---------C---------HHHHHHHHHHHH-HTT-SE
T ss_pred CC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCC---------C---------hhhhhHHHHHHH-Hhh-ce
Confidence 44 1223345699999999999999997 2211110000 0 001235677777 777 99
Q ss_pred eeEEEECCCc---eeEEEEEec
Q 017777 347 GFQVVSSAFN---TYIMEFLKS 365 (366)
Q Consensus 347 ~~~~~~~~~~---~~vie~~k~ 365 (366)
+++....... ..++.++|+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~ 227 (227)
T 1g8a_A 206 VIERLNLEPYEKDHALFVVRKT 227 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEECC
T ss_pred eeeEeccCcccCCCEEEEEEeC
Confidence 9988887544 666777653
No 118
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.30 E-value=3.7e-12 Score=113.63 Aligned_cols=124 Identities=18% Similarity=0.207 Sum_probs=95.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCCC--CCEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVPK--GDAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~--~D~i~~~~~lh~ 271 (366)
.+..+|||+|||+|.++..+++..+ +++++|+ +.+++.++++ -.+++..+|+.++++. .|+|+++...|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 4568999999999999999888655 8999998 7777766542 1288999988764432 39999865544
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
....+++++.+.|+|||++++.+... .+.+++.++++++||+++++.
T Consensus 196 ----~~~~~l~~~~~~LkpgG~lils~~~~-----------------------------~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 196 ----LHAALAPRYREALVPGGRALLTGILK-----------------------------DRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHHEEEEEEEEEEEEEG-----------------------------GGHHHHHHHHHHTTCEEEEEE
T ss_pred ----HHHHHHHHHHHHcCCCCEEEEEeecc-----------------------------CCHHHHHHHHHHCCCEEEEEe
Confidence 34688999999999999999975421 125788999999999999988
Q ss_pred ECCCceeE
Q 017777 352 SSAFNTYI 359 (366)
Q Consensus 352 ~~~~~~~v 359 (366)
..++...+
T Consensus 243 ~~~~W~~l 250 (254)
T 2nxc_A 243 AEGEWVLL 250 (254)
T ss_dssp EETTEEEE
T ss_pred ccCCeEEE
Confidence 87655443
No 119
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.30 E-value=4.5e-12 Score=112.93 Aligned_cols=127 Identities=13% Similarity=0.144 Sum_probs=97.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~ 259 (366)
...++..+. ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++. .+++++.+|+.+.++.
T Consensus 82 ~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (255)
T 3mb5_A 82 AALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE 160 (255)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred HHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence 345555555 677889999999999999999999 78899999998 7888777642 4599999999876654
Q ss_pred C--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH
Q 017777 260 G--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR 337 (366)
Q Consensus 260 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 337 (366)
. |+|++ ++++. ..+++++.++|+|||++++...... ...++.
T Consensus 161 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 204 (255)
T 3mb5_A 161 ENVDHVIL-----DLPQP--ERVVEHAAKALKPGGFFVAYTPCSN-----------------------------QVMRLH 204 (255)
T ss_dssp CSEEEEEE-----CSSCG--GGGHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred CCcCEEEE-----CCCCH--HHHHHHHHHHcCCCCEEEEEECCHH-----------------------------HHHHHH
Confidence 3 99987 23333 3689999999999999999753210 135677
Q ss_pred HHHHHcC--CceeEEEE
Q 017777 338 ALAKAAG--FQGFQVVS 352 (366)
Q Consensus 338 ~ll~~aG--f~~~~~~~ 352 (366)
++++++| |..+++..
T Consensus 205 ~~l~~~g~~f~~~~~~e 221 (255)
T 3mb5_A 205 EKLREFKDYFMKPRTIN 221 (255)
T ss_dssp HHHHHTGGGBSCCEEEC
T ss_pred HHHHHcCCCccccEEEE
Confidence 8888999 88777654
No 120
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.30 E-value=1.8e-11 Score=105.43 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=92.5
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------C-CceEEEccCCCC---CCC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------P-GVEHVGGDMFVS---VPK 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~~---~~~ 259 (366)
.++..+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. + +++++.+|+.+. .+.
T Consensus 46 ~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 46 LTLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 3455555 667789999999999999999987 779999998 8888776542 4 799999999872 223
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
.|+|++...+ + .. +++++.++|+|||++++..... .+..++.++
T Consensus 123 ~D~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~~~~-----------------------------~~~~~~~~~ 166 (204)
T 3njr_A 123 PEAVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANAVTL-----------------------------ESETLLTQL 166 (204)
T ss_dssp CSEEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEECSH-----------------------------HHHHHHHHH
T ss_pred CCEEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEecCc-----------------------------ccHHHHHHH
Confidence 4999987644 1 23 8999999999999999865321 124567788
Q ss_pred HHHcCCceeEE
Q 017777 340 AKAAGFQGFQV 350 (366)
Q Consensus 340 l~~aGf~~~~~ 350 (366)
+++.|+++.++
T Consensus 167 l~~~g~~i~~i 177 (204)
T 3njr_A 167 HARHGGQLLRI 177 (204)
T ss_dssp HHHHCSEEEEE
T ss_pred HHhCCCcEEEE
Confidence 89999887665
No 121
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.30 E-value=1.1e-11 Score=108.67 Aligned_cols=137 Identities=18% Similarity=0.141 Sum_probs=97.2
Q ss_pred CCCCCeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCC--CCCCCC--CEEEecc
Q 017777 199 FEGLNSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMF--VSVPKG--DAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~--~~~~~~--D~i~~~~ 267 (366)
..+..+|||+||| +|.++..+++.. ..+++++|+ +.+++.+++. .+++++.+|.. .+.+.. |+|+++.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4567899999999 999999999886 678999998 8888776542 27999999963 344433 9999887
Q ss_pred ccccCChHH-----------------HHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCcc
Q 017777 268 ICHDWSDEH-----------------CVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKE 330 (366)
Q Consensus 268 ~lh~~~~~~-----------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (366)
.++..++.+ ...+++.+.+.|+|||++++......
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------------- 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE---------------------------- 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH----------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH----------------------------
Confidence 766543321 36899999999999999999632110
Q ss_pred CCHHHHHHHHHHcCCceeEEEECC--CceeEEEEEe
Q 017777 331 RTEQEFRALAKAAGFQGFQVVSSA--FNTYIMEFLK 364 (366)
Q Consensus 331 ~t~~e~~~ll~~aGf~~~~~~~~~--~~~~vie~~k 364 (366)
...+++.+++++.||.+..+.... ....++.+.|
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~~ 219 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFFK 219 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEEC
T ss_pred hHHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEec
Confidence 124678899999999876665443 2334554444
No 122
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.29 E-value=7.5e-12 Score=108.60 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=75.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC-C--CCCC--CEEEeccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV-S--VPKG--DAIFIKWI 268 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~--~~~~--D~i~~~~~ 268 (366)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ + ++.+ |.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 457899999999999999999999999999998 777776653 2579999999876 3 4443 88876543
Q ss_pred cccCChHH------HHHHHHHHHHhCCCCcEEEEEc
Q 017777 269 CHDWSDEH------CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 269 lh~~~~~~------~~~~L~~~~~~L~pgG~lli~e 298 (366)
..+..... ...+|+.+.++|+|||.|++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 32211110 2478999999999999999864
No 123
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.28 E-value=3.3e-12 Score=106.85 Aligned_cols=138 Identities=10% Similarity=-0.005 Sum_probs=97.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCC-CCEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPK-GDAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~-~D~i~~~~~lh~ 271 (366)
....+|||+|||+|-++..++...|+.+++++|+ +.+++.++++ ...++...|..+ +.+. +|+|+...+||+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LHl 127 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPV 127 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHHh
Confidence 4578999999999999999999999999999998 8888877653 122333366655 3333 399999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
+ + +....+.++.+.|+|||.+|-.+.-.=..+. .+-.......|++.+ ...+.+++..
T Consensus 128 L-~-~~~~al~~v~~~L~pggvfISfptksl~Gr~-------------------~gm~~~Y~~~~~~~~-~~~~~~~~~~ 185 (200)
T 3fzg_A 128 L-K-QQDVNILDFLQLFHTQNFVISFPIKSLSGKE-------------------KGMEENYQLWFESFT-KGWIKILDSK 185 (200)
T ss_dssp H-H-HTTCCHHHHHHTCEEEEEEEEEECCCCC--C-------------------TTCCCCHHHHHHHHT-TTTSCEEEEE
T ss_pred h-h-hhHHHHHHHHHHhCCCCEEEEeChHHhcCCC-------------------cchhhhHHHHHHHhc-cCcceeeeee
Confidence 9 3 3346677999999999999888732111110 122223355666666 6677888777
Q ss_pred ECCCceeE
Q 017777 352 SSAFNTYI 359 (366)
Q Consensus 352 ~~~~~~~v 359 (366)
.+++-.-.
T Consensus 186 ~~~nEl~y 193 (200)
T 3fzg_A 186 VIGNELVY 193 (200)
T ss_dssp EETTEEEE
T ss_pred eeCceEEE
Confidence 77554433
No 124
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.28 E-value=8.1e-12 Score=109.83 Aligned_cols=143 Identities=11% Similarity=0.035 Sum_probs=97.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hh----HHhhCCCCCCceEEEccCCCC--CC---CC-CEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PH----VIQDAPAFPGVEHVGGDMFVS--VP---KG-DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~v~~~~~D~~~~--~~---~~-D~i~~~ 266 (366)
+.+..+|||+|||+|.++..+++.+ |+.+++++|+ +. +++.+++..+++++.+|+.++ .+ .. |+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999986 6789999998 44 344555457899999999872 22 23 999985
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
.. ..+....+++++.++|+|||++++.-......... .... +...+ .++|+++||+
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~----------~~~~---------~~~~~-~~~l~~~Gf~ 210 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTA----------SAEA---------VFASE-VKKMQQENMK 210 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSS----------CHHH---------HHHHH-HHTTGGGTEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCC----------CHHH---------HHHHH-HHHHHHCCCc
Confidence 44 22344567999999999999999942211000000 0000 00123 5889999999
Q ss_pred eeEEEECCC---ceeEEEEEec
Q 017777 347 GFQVVSSAF---NTYIMEFLKS 365 (366)
Q Consensus 347 ~~~~~~~~~---~~~vie~~k~ 365 (366)
+++...... ...++.++++
T Consensus 211 ~~~~~~~~~~~~~~~~v~~~~~ 232 (233)
T 2ipx_A 211 PQEQLTLEPYERDHAVVVGVYR 232 (233)
T ss_dssp EEEEEECTTTSSSEEEEEEEEC
T ss_pred eEEEEecCCccCCcEEEEEEeC
Confidence 998777643 3566666653
No 125
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.27 E-value=6.3e-12 Score=107.43 Aligned_cols=102 Identities=17% Similarity=0.130 Sum_probs=79.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-C-CC-CC-CEEEe
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-S-VP-KG-DAIFI 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~-~~-~~-D~i~~ 265 (366)
..+..+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++. ++++++.+|+.+ + .. .. |+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4567899999999999999999986 6779999998 7888777543 579999999866 2 33 33 99998
Q ss_pred cccccc-------CChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 266 KWICHD-------WSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 266 ~~~lh~-------~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
...+.. ...+....+++++.++|+|||++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 765511 12234567999999999999999998754
No 126
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.27 E-value=2.6e-12 Score=112.46 Aligned_cols=113 Identities=13% Similarity=0.102 Sum_probs=87.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-CCCceEEEccCCC--CCC-CC--CEEEeccccccC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-FPGVEHVGGDMFV--SVP-KG--DAIFIKWICHDW 272 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~--~~~-~~--D~i~~~~~lh~~ 272 (366)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++++|+.+ +++ .. |+|+++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 45689999999999999999987 568999998 888887765 4789999999965 444 33 9999871
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
+...+|++++++|||||+++.. + ...+.+++.++++++||+.+.+..
T Consensus 120 ---~~~~~l~~~~~~LkpgG~l~~~-----------------------------~-~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 120 ---GPTSVILRLPELAAPDAHFLYV-----------------------------G-PRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp ---CCSGGGGGHHHHEEEEEEEEEE-----------------------------E-SSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCcEEEEe-----------------------------C-CcCCHHHHHHHHHHCCCeEEEEEe
Confidence 1237799999999999999910 0 012345788999999999877654
No 127
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.27 E-value=5e-12 Score=111.75 Aligned_cols=133 Identities=14% Similarity=0.091 Sum_probs=97.1
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCC----C-CCEEEec
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVP----K-GDAIFIK 266 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~----~-~D~i~~~ 266 (366)
.+..+|||||||+|..+..++...|+.+++++|+ +.+++.+++. .+++++++|+.+ +.+ . .|+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4568999999999999999998889999999998 7777776542 469999999866 432 2 3999987
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
.+ .+ ...+++.+.++|+|||++++....... ....++.+.++++||+
T Consensus 149 ~~----~~--~~~~l~~~~~~LkpgG~l~~~~g~~~~---------------------------~~~~~~~~~l~~~g~~ 195 (240)
T 1xdz_A 149 AV----AR--LSVLSELCLPLVKKNGLFVALKAASAE---------------------------EELNAGKKAITTLGGE 195 (240)
T ss_dssp CC----SC--HHHHHHHHGGGEEEEEEEEEEECC-CH---------------------------HHHHHHHHHHHHTTEE
T ss_pred cc----CC--HHHHHHHHHHhcCCCCEEEEEeCCCch---------------------------HHHHHHHHHHHHcCCe
Confidence 63 22 458899999999999999986321000 0134677889999999
Q ss_pred eeEEEE--CC---CceeEEEEEec
Q 017777 347 GFQVVS--SA---FNTYIMEFLKS 365 (366)
Q Consensus 347 ~~~~~~--~~---~~~~vie~~k~ 365 (366)
+++... .+ +...++.++|.
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~k~ 219 (240)
T 1xdz_A 196 LENIHSFKLPIEESDRNIMVIRKI 219 (240)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEEC
T ss_pred EeEEEEEecCCCCCceEEEEEEec
Confidence 877654 22 33445555553
No 128
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.26 E-value=1.1e-11 Score=113.46 Aligned_cols=129 Identities=17% Similarity=0.191 Sum_probs=93.2
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC-CC--C-C-CCEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV-SV--P-K-GDAI 263 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~-~~--~-~-~D~i 263 (366)
.++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .++++++.+|..+ .. + . .|+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998777789999998 777776653 2689999999876 21 2 2 3999
Q ss_pred EeccccccCChHHH--HHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHH
Q 017777 264 FIKWICHDWSDEHC--VKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAK 341 (366)
Q Consensus 264 ~~~~~lh~~~~~~~--~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 341 (366)
++....+..+.... ..++++++++|+|||++++..... ..+ .....++.+.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~~-----------~~~~~~~~~~l~ 228 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------WLD-----------LELIEKMSRFIR 228 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------------TTC-----------HHHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------ccc-----------hHHHHHHHHHHH
Confidence 99776665544332 588999999999999999874210 000 113567889999
Q ss_pred HcCCceeEEEEC
Q 017777 342 AAGFQGFQVVSS 353 (366)
Q Consensus 342 ~aGf~~~~~~~~ 353 (366)
++||..+++...
T Consensus 229 ~~GF~~v~~~~~ 240 (304)
T 3bwc_A 229 ETGFASVQYALM 240 (304)
T ss_dssp HHTCSEEEEEEC
T ss_pred hCCCCcEEEEEe
Confidence 999998887654
No 129
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.26 E-value=9.9e-12 Score=110.75 Aligned_cols=126 Identities=15% Similarity=0.140 Sum_probs=95.5
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC-CCCC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~~~ 259 (366)
..++..++ +.+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .+++++..+|+.+ +++.
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 45666665 677889999999999999999998 67889999997 777776653 2679999999987 4664
Q ss_pred C--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH
Q 017777 260 G--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR 337 (366)
Q Consensus 260 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 337 (366)
. |+|++. +++. ..+|+++.++|+|||++++...... ...++.
T Consensus 165 ~~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 208 (258)
T 2pwy_A 165 AAYDGVALD-----LMEP--WKVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLELV 208 (258)
T ss_dssp TCEEEEEEE-----SSCG--GGGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHHHH
T ss_pred CCcCEEEEC-----CcCH--HHHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHHHH
Confidence 3 999872 3333 3789999999999999999764210 123566
Q ss_pred HHHHHcCCceeEEEE
Q 017777 338 ALAKAAGFQGFQVVS 352 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~ 352 (366)
+.++++||..+++..
T Consensus 209 ~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 209 RAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHTTTTEEEEEEEE
T ss_pred HHHHHCCCceEEEEE
Confidence 677788998766544
No 130
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.26 E-value=7.1e-12 Score=106.10 Aligned_cols=120 Identities=20% Similarity=0.188 Sum_probs=92.0
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC---C
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP---K 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~---~ 259 (366)
.++..+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++. +++++..+|+.++.+ .
T Consensus 24 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 3444444 6677899999999999999999877 68999997 7777766542 578999999866333 3
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
.|+|++..++++ ...+++++.++|+|||++++..... .+..++.++
T Consensus 101 ~D~v~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~~~-----------------------------~~~~~~~~~ 146 (192)
T 1l3i_A 101 IDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAILL-----------------------------ETKFEAMEC 146 (192)
T ss_dssp EEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEECBH-----------------------------HHHHHHHHH
T ss_pred CCEEEECCchHH-----HHHHHHHHHHhcCCCcEEEEEecCc-----------------------------chHHHHHHH
Confidence 499999888765 2578999999999999999865321 014567889
Q ss_pred HHHcCCce
Q 017777 340 AKAAGFQG 347 (366)
Q Consensus 340 l~~aGf~~ 347 (366)
+++.||.+
T Consensus 147 l~~~g~~~ 154 (192)
T 1l3i_A 147 LRDLGFDV 154 (192)
T ss_dssp HHHTTCCC
T ss_pred HHHCCCce
Confidence 99999954
No 131
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.25 E-value=8.2e-11 Score=102.90 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=95.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhH----HhhCCCCCCceEEEccCCCCC-----CCC-CEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHV----IQDAPAFPGVEHVGGDMFVSV-----PKG-DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~D~~~~~-----~~~-D~i~~~ 266 (366)
+.+..+|||+|||+|..+..+++.. |+.+++++|+ +.+ ++.+++..++.++.+|...+. .+. |+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 5678999999999999999998874 5779999998 655 344444578999999987621 223 999876
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
... ++ ....+++.+++.|||||+|++.......+... ... ...++..+.|+++||+
T Consensus 154 ~a~---~~-~~~il~~~~~~~LkpGG~lvisik~~~~d~t~-------------------~~~-e~~~~~~~~L~~~gf~ 209 (232)
T 3id6_C 154 IAQ---PD-QTDIAIYNAKFFLKVNGDMLLVIKARSIDVTK-------------------DPK-EIYKTEVEKLENSNFE 209 (232)
T ss_dssp CCC---TT-HHHHHHHHHHHHEEEEEEEEEEEC-------C-------------------CSS-SSTTHHHHHHHHTTEE
T ss_pred CCC---hh-HHHHHHHHHHHhCCCCeEEEEEEccCCcccCC-------------------CHH-HHHHHHHHHHHHCCCE
Confidence 543 22 33345566777999999999974221111000 000 0112345677889999
Q ss_pred eeEEEECC---CceeEEEEEec
Q 017777 347 GFQVVSSA---FNTYIMEFLKS 365 (366)
Q Consensus 347 ~~~~~~~~---~~~~vie~~k~ 365 (366)
+++...+. ..+.++.++|+
T Consensus 210 ~~~~~~l~p~~~~h~~v~~~~~ 231 (232)
T 3id6_C 210 TIQIINLDPYDKDHAIVLSKYK 231 (232)
T ss_dssp EEEEEECTTTCSSCEEEEEEEC
T ss_pred EEEEeccCCCcCceEEEEEEeC
Confidence 99988874 34677777664
No 132
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.24 E-value=4.6e-11 Score=106.74 Aligned_cols=136 Identities=13% Similarity=0.101 Sum_probs=100.7
Q ss_pred CC-CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-C--CCC-C-CEEE
Q 017777 199 FE-GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-S--VPK-G-DAIF 264 (366)
Q Consensus 199 ~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~--~~~-~-D~i~ 264 (366)
.. +..+|||+|||+|.++..++++.+. +++++|+ +.+++.++++ ++++++.+|+.+ + ++. . |+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 6789999999999999999998776 8999998 7787776542 479999999987 2 333 2 9999
Q ss_pred eccccccC------------------ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCC
Q 017777 265 IKWICHDW------------------SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNP 326 (366)
Q Consensus 265 ~~~~lh~~------------------~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (366)
++..++.. .......+++.+.++|+|||+++++.. .
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~----------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---P----------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---T-----------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---H-----------------------
Confidence 97554332 112345799999999999999999521 1
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEEEC------CCceeEEEEEec
Q 017777 327 GGKERTEQEFRALAKAAGFQGFQVVSS------AFNTYIMEFLKS 365 (366)
Q Consensus 327 ~~~~~t~~e~~~ll~~aGf~~~~~~~~------~~~~~vie~~k~ 365 (366)
....++.+++++.||...++.++ .....+++++|.
T Consensus 179 ----~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k~ 219 (259)
T 3lpm_A 179 ----ERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIKD 219 (259)
T ss_dssp ----TTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEET
T ss_pred ----HHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEeC
Confidence 12456788899999998776554 135667888875
No 133
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.24 E-value=1.3e-11 Score=111.22 Aligned_cols=95 Identities=16% Similarity=0.233 Sum_probs=78.0
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCCCCEEEeccccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPKGDAIFIKWICH 270 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~D~i~~~~~lh 270 (366)
+.++.+|||||||+|.++..++.+.++.+++++|+ +++++.|++. ++++++++|..+ +....|+|++....
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~~- 198 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALA- 198 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTTC-
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCCc-
Confidence 67889999999999988877777778999999998 8888887653 689999999886 42234999986542
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 271 DWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
+ +..++++++.++|||||+|++.+
T Consensus 199 --~--d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 199 --E--PKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp --S--CHHHHHHHHHHHCCTTCEEEEEE
T ss_pred --c--CHHHHHHHHHHHcCCCcEEEEEc
Confidence 2 34588999999999999999976
No 134
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.23 E-value=1.9e-11 Score=109.30 Aligned_cols=97 Identities=16% Similarity=0.161 Sum_probs=76.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCC--CEEEeccccccCChHH
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEH 276 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~ 276 (366)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++...-.++.+|+.+ +++.+ |+|++.++++++.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 5689999999999999999886 568999998 8888777643222388899877 66543 999998866555322
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccc
Q 017777 277 CVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 277 ~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
...+|++++++|+|||++++....
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 568999999999999999997653
No 135
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.22 E-value=6.6e-12 Score=109.32 Aligned_cols=98 Identities=15% Similarity=0.208 Sum_probs=76.2
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC--C--CCCC--CEEEecc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV--S--VPKG--DAIFIKW 267 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~--~--~~~~--D~i~~~~ 267 (366)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++++|+.+ + ++.+ |.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 467999999999999999999999999999998 777766543 2579999999765 2 4544 8888764
Q ss_pred ccccCChHHH------HHHHHHHHHhCCCCcEEEEEc
Q 017777 268 ICHDWSDEHC------VKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 268 ~lh~~~~~~~------~~~L~~~~~~L~pgG~lli~e 298 (366)
...+...... ..+++.++++|||||++++..
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 4432222221 258999999999999999865
No 136
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.22 E-value=1.8e-11 Score=115.25 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=85.1
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---------CCceEEEccCCCCCCCC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---------PGVEHVGGDMFVSVPKG 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~~~~~~ 260 (366)
.+++.++ .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.++++ .+++++.+|++++.+..
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 4566665 44558999999999999999999999999999998 7788777642 25788999999866643
Q ss_pred --CEEEecccccc---CChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 261 --DAIFIKWICHD---WSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 261 --D~i~~~~~lh~---~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
|+|+++..+|+ .++.....+++++.+.|+|||+++++.
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 99999998885 334445588999999999999999964
No 137
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.22 E-value=1.5e-11 Score=103.23 Aligned_cols=109 Identities=11% Similarity=0.052 Sum_probs=83.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--CCceEEEccCCC-CC---CCC--CEEEecccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--PGVEHVGGDMFV-SV---PKG--DAIFIKWIC 269 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~---~~~--D~i~~~~~l 269 (366)
.....+|||||||. +.+|. +.+++.+++. .+++++.+|+.+ ++ +.. |+|++.+++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56779999999996 23786 7888777643 369999999877 44 443 999999999
Q ss_pred ccC-ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCC
Q 017777 270 HDW-SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGF 345 (366)
Q Consensus 270 h~~-~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 345 (366)
|++ ++. ..+|++++++|||||++++.+....... .....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRPGGCLFLKEPVETAVD--------------------NNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESSSC--------------------SSSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCH--HHHHHHHHHHCCCCEEEEEEcccccccc--------------------cccccCCHHHHHHHHHHCCC
Confidence 998 654 5889999999999999999665432210 01223578999999999999
No 138
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.22 E-value=1.4e-12 Score=116.34 Aligned_cols=144 Identities=9% Similarity=-0.017 Sum_probs=94.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC----CCC-----CCCEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV----SVP-----KGDAI 263 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~----~~~-----~~D~i 263 (366)
+..+|||+|||+|.++..++...|+.+++++|+ +.+++.+++. .+++++.+|+.+ +++ ..|+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 467999999999999999999888899999998 8888776542 359999998532 344 23999
Q ss_pred EeccccccCCh-------------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCcc
Q 017777 264 FIKWICHDWSD-------------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKE 330 (366)
Q Consensus 264 ~~~~~lh~~~~-------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (366)
+++..+|.... +....++++++++|||||.+.+++.+.... ........+.. . ..+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~------~~~l~~~g~~~--~-~~~~~ 215 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS------LQLKKRLRWYS--C-MLGKK 215 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH------HHHGGGBSCEE--E-EESST
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH------HhcccceEEEE--E-CCCCh
Confidence 99866664431 112356788999999999998876543210 00000000000 0 12334
Q ss_pred CCHHHHHHHHHHcCCceeEEEEC
Q 017777 331 RTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 331 ~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
.+.+++.++++++||+.+++...
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEEEE
Confidence 45688999999999998877665
No 139
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.21 E-value=7.7e-11 Score=100.86 Aligned_cols=106 Identities=16% Similarity=0.181 Sum_probs=79.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC--CCeEEEecchhHHhhCCCCCCceEEEccCCC-C---------
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYP--SIKGINFDLPHVIQDAPAFPGVEHVGGDMFV-S--------- 256 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~--------- 256 (366)
+.++.+.+..+.+..+|||||||+|.++..+++.+| +.+++++|+.++ ...++++++.+|+.+ +
T Consensus 10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTTSSCCC-----
T ss_pred HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccchhhhhhccccc
Confidence 445566665345678999999999999999999998 689999998543 124679999999877 4
Q ss_pred ----------------CCC-C-CEEEeccccccCC----hHH-----HHHHHHHHHHhCCCCcEEEEEc
Q 017777 257 ----------------VPK-G-DAIFIKWICHDWS----DEH-----CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 257 ----------------~~~-~-D~i~~~~~lh~~~----~~~-----~~~~L~~~~~~L~pgG~lli~e 298 (366)
++. . |+|++...+|+.. +.. ...+|+++.++|+|||++++..
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 343 2 9999988777532 111 1248999999999999998843
No 140
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.21 E-value=1.4e-11 Score=106.09 Aligned_cols=90 Identities=13% Similarity=0.061 Sum_probs=73.6
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC-C-CCEEEeccccccC
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP-K-GDAIFIKWICHDW 272 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~-~D~i~~~~~lh~~ 272 (366)
..+|||||||+|..+..++..+|+.+++++|. +.+++.+++. .+++++.+|+.+..+ . .|+|++..+ ++
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~~- 143 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-AS- 143 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-SS-
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-CC-
Confidence 57999999999999999999999999999998 7777766532 459999999987333 2 399997542 22
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
...+++++.++|+|||++++.
T Consensus 144 ----~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 144 ----LNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ----HHHHHHHHTTSEEEEEEEEEE
T ss_pred ----HHHHHHHHHHhcCCCcEEEEE
Confidence 358899999999999999986
No 141
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.20 E-value=3.7e-11 Score=100.90 Aligned_cols=121 Identities=15% Similarity=0.103 Sum_probs=91.9
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC--C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK--G 260 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~--~ 260 (366)
..+...+. ..+..+|||+|||+|.++..+++ +..+++++|. +.+++.+++. ++++++.+|+.++.+. .
T Consensus 25 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 101 (183)
T 2yxd_A 25 AVSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEF 101 (183)
T ss_dssp HHHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCC
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCC
Confidence 34555554 56678999999999999999988 7889999998 7777776543 5799999998774443 4
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|+|++..+ + ....+++++++. |||++++...... +..++.+++
T Consensus 102 D~i~~~~~-~-----~~~~~l~~~~~~--~gG~l~~~~~~~~-----------------------------~~~~~~~~l 144 (183)
T 2yxd_A 102 NKAFIGGT-K-----NIEKIIEILDKK--KINHIVANTIVLE-----------------------------NAAKIINEF 144 (183)
T ss_dssp SEEEECSC-S-----CHHHHHHHHHHT--TCCEEEEEESCHH-----------------------------HHHHHHHHH
T ss_pred cEEEECCc-c-----cHHHHHHHHhhC--CCCEEEEEecccc-----------------------------cHHHHHHHH
Confidence 99999888 2 235789999988 9999999764210 135677899
Q ss_pred HHcCCceeEE
Q 017777 341 KAAGFQGFQV 350 (366)
Q Consensus 341 ~~aGf~~~~~ 350 (366)
+++||.+..+
T Consensus 145 ~~~g~~~~~~ 154 (183)
T 2yxd_A 145 ESRGYNVDAV 154 (183)
T ss_dssp HHTTCEEEEE
T ss_pred HHcCCeEEEE
Confidence 9999876544
No 142
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.20 E-value=9.8e-11 Score=105.55 Aligned_cols=149 Identities=14% Similarity=0.063 Sum_probs=95.4
Q ss_pred HHHHHHhccCCC-CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhh-CCCCCCceEEE-ccCCC----CCCC-
Q 017777 189 MKKILENYKGFE-GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQD-APAFPGVEHVG-GDMFV----SVPK- 259 (366)
Q Consensus 189 ~~~~~~~~~~~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~~v~~~~-~D~~~----~~~~- 259 (366)
+..++..+. +. ...+|||||||+|.++..+++. +..+++++|+ +.|++. .+..+++.... .|+.. .+|.
T Consensus 73 l~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~ 150 (291)
T 3hp7_A 73 LEKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEG 150 (291)
T ss_dssp HHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTC
T ss_pred HHHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCC
Confidence 445666665 44 4579999999999999988886 4458999998 777766 33345554433 23321 2332
Q ss_pred -CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCch-hhhhhhhcchhhHhhCCCCccCCHHHHH
Q 017777 260 -GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSL-ASKVVIHVDCIMLAHNPGGKERTEQEFR 337 (366)
Q Consensus 260 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 337 (366)
.|++++..++|++ ..+|.+++++|+|||+++++- .|+-..... ....-...+.. ...+..+++.
T Consensus 151 ~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lv--kPqfe~~~~~~~~~G~vrd~~-------~~~~~~~~v~ 216 (291)
T 3hp7_A 151 LPSFASIDVSFISL-----NLILPALAKILVDGGQVVALV--KPQFEAGREQIGKNGIVRESS-------IHEKVLETVT 216 (291)
T ss_dssp CCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CGGGTSCGGGCC-CCCCCCHH-------HHHHHHHHHH
T ss_pred CCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEE--CcccccChhhcCCCCccCCHH-------HHHHHHHHHH
Confidence 4999998888764 478999999999999999862 111110000 00000000100 0123578999
Q ss_pred HHHHHcCCceeEEEEC
Q 017777 338 ALAKAAGFQGFQVVSS 353 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~~ 353 (366)
+++.++||.+..+...
T Consensus 217 ~~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 217 AFAVDYGFSVKGLDFS 232 (291)
T ss_dssp HHHHHTTEEEEEEEEC
T ss_pred HHHHHCCCEEEEEEEC
Confidence 9999999998876654
No 143
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.20 E-value=1e-11 Score=115.75 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=86.9
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCCCC-CE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVPKG-DA 262 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~-D~ 262 (366)
..+++.++ .....+|||||||+|.++..+++..|+.+++++|+ +.+++.+++. ..++++.+|+++..+.. |+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 44556564 34457999999999999999999999999999998 7777776542 34678899988643433 99
Q ss_pred EEeccccccC---ChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 263 IFIKWICHDW---SDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 263 i~~~~~lh~~---~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
|+++..+|+. ..+....+|++++++|+|||+++++..
T Consensus 265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 9999999862 345567999999999999999999764
No 144
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.20 E-value=6.7e-11 Score=112.49 Aligned_cols=112 Identities=18% Similarity=0.282 Sum_probs=85.5
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhC-------CC--------CCCceEEEcc
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDA-------PA--------FPGVEHVGGD 252 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~--------~~~v~~~~~D 252 (366)
+..++..+. +.+..+|||||||+|.++..+++.++..+++++|+ +.+++.| ++ ..+++++.+|
T Consensus 231 v~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD 309 (433)
T 1u2z_A 231 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309 (433)
T ss_dssp HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence 345566565 67788999999999999999999888778999997 6665555 32 2578998876
Q ss_pred CCC-C--C----CCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCC
Q 017777 253 MFV-S--V----PKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVT 304 (366)
Q Consensus 253 ~~~-~--~----~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 304 (366)
.+. + + ...|+|+++++++. ++...+|+++.+.|||||+|++.+...+..
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~~l~~---~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred ccccccccccccCCCCEEEEeCcccc---ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 442 2 2 23499998877742 455678999999999999999998776654
No 145
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.19 E-value=1.4e-10 Score=100.64 Aligned_cols=130 Identities=13% Similarity=0.058 Sum_probs=101.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC---CCCEEEeccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP---KGDAIFIKWI 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~---~~D~i~~~~~ 268 (366)
.+..+|+|||||+|.++..+++..|..+++++|+ +.+++.|+++ ++|++..+|.+++.+ ..|+|++...
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 3567999999999999999999998889999998 7777777642 479999999988555 2499987655
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCcee
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGF 348 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 348 (366)
- .+-...+|....+.|+|+|++++.-. ...+.++++|.+.||.++
T Consensus 94 G----g~~i~~Il~~~~~~L~~~~~lVlq~~-------------------------------~~~~~vr~~L~~~Gf~i~ 138 (225)
T 3kr9_A 94 G----GRLIARILEEGLGKLANVERLILQPN-------------------------------NREDDLRIWLQDHGFQIV 138 (225)
T ss_dssp C----HHHHHHHHHHTGGGCTTCCEEEEEES-------------------------------SCHHHHHHHHHHTTEEEE
T ss_pred C----hHHHHHHHHHHHHHhCCCCEEEEECC-------------------------------CCHHHHHHHHHHCCCEEE
Confidence 2 34467899999999999999888422 025678899999999988
Q ss_pred EEEE---CCCceeEEEEEe
Q 017777 349 QVVS---SAFNTYIMEFLK 364 (366)
Q Consensus 349 ~~~~---~~~~~~vie~~k 364 (366)
+..- .+-++.+|.+.+
T Consensus 139 ~e~lv~e~~~~Yeii~~~~ 157 (225)
T 3kr9_A 139 AESILEEAGKFYEILVVEA 157 (225)
T ss_dssp EEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEEe
Confidence 7543 345666777654
No 146
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.19 E-value=1.2e-11 Score=109.84 Aligned_cols=132 Identities=13% Similarity=0.045 Sum_probs=97.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCC----C-CCEEEec
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVP----K-GDAIFIK 266 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~----~-~D~i~~~ 266 (366)
....+|||||||+|..+..++..+|+.+++++|. +.+++.+++. .+++++++|+.+ +.. . .|+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4578999999999999999999999999999997 7777766542 469999999876 331 2 3999986
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
.+- + ...+++.+.+.|+|||++++....... ....++.+.++..||+
T Consensus 159 a~~----~--~~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------------~e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 159 AVA----P--LCVLSELLLPFLEVGGAAVAMKGPRVE---------------------------EELAPLPPALERLGGR 205 (249)
T ss_dssp SSC----C--HHHHHHHHGGGEEEEEEEEEEECSCCH---------------------------HHHTTHHHHHHHHTEE
T ss_pred CcC----C--HHHHHHHHHHHcCCCeEEEEEeCCCcH---------------------------HHHHHHHHHHHHcCCe
Confidence 542 1 247899999999999999986531110 0123466778889999
Q ss_pred eeEEEEC--C---CceeEEEEEe
Q 017777 347 GFQVVSS--A---FNTYIMEFLK 364 (366)
Q Consensus 347 ~~~~~~~--~---~~~~vie~~k 364 (366)
+.++.+. + ....++.+.|
T Consensus 206 ~~~~~~~~~p~~~~~R~l~~~~k 228 (249)
T 3g89_A 206 LGEVLALQLPLSGEARHLVVLEK 228 (249)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEE
T ss_pred EEEEEEeeCCCCCCcEEEEEEEe
Confidence 8877654 2 3445666655
No 147
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.18 E-value=1.4e-10 Score=100.86 Aligned_cols=130 Identities=13% Similarity=0.021 Sum_probs=101.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC---CCCEEEeccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP---KGDAIFIKWI 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~---~~D~i~~~~~ 268 (366)
.+..+|+|||||+|.++..+++..|..+++++|+ +.+++.|+++ ++++++.+|.++..+ ..|+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 3568999999999999999999988888999998 7787777642 579999999998443 2499987665
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCcee
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGF 348 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 348 (366)
. .+-...+|....+.|+++|++++.-. ...++++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------------~~~~~lr~~L~~~Gf~i~ 144 (230)
T 3lec_A 100 G----GRLIADILNNDIDKLQHVKTLVLQPN-------------------------------NREDDLRKWLAANDFEIV 144 (230)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEES-------------------------------SCHHHHHHHHHHTTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCcCCEEEEECC-------------------------------CChHHHHHHHHHCCCEEE
Confidence 4 34567899999999999999888531 015678899999999988
Q ss_pred EEEEC---CCceeEEEEEe
Q 017777 349 QVVSS---AFNTYIMEFLK 364 (366)
Q Consensus 349 ~~~~~---~~~~~vie~~k 364 (366)
+..-+ +.++.+|.+.+
T Consensus 145 ~E~lv~e~~~~Yeii~~~~ 163 (230)
T 3lec_A 145 AEDILTENDKRYEILVVKH 163 (230)
T ss_dssp EEEEEEC--CEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEEe
Confidence 75532 45667777765
No 148
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.17 E-value=1.8e-11 Score=114.21 Aligned_cols=105 Identities=19% Similarity=0.145 Sum_probs=83.3
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceEEEccCCC-CCCCC-C
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGDMFV-SVPKG-D 261 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D 261 (366)
.+...+. ..+..+|||||||+|.++..+++. +..+++++|..++++.+++. ++++++.+|+.+ +.++. |
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 4555554 456789999999999999988875 55689999985566555431 679999999987 55544 9
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
+|++..++|++..+.....+.+++++|+|||.+++.
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 999998888887666678889999999999999854
No 149
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.17 E-value=8.3e-11 Score=98.01 Aligned_cols=106 Identities=20% Similarity=0.206 Sum_probs=82.8
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecchhHHhhCCCCCCceEEEccCCC-C--------CCC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDLPHVIQDAPAFPGVEHVGGDMFV-S--------VPK 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~--------~~~ 259 (366)
..+...+....+..+|||+|||+|.++..+++.+ |+.+++++|+.++++ ..+++++.+|+.+ + ++.
T Consensus 11 ~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCC
Confidence 3455555434567899999999999999999985 678999999844432 3789999999987 4 553
Q ss_pred C--CEEEeccccccCChHH---------HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 G--DAIFIKWICHDWSDEH---------CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 ~--D~i~~~~~lh~~~~~~---------~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. |+|++...+|..+... ...+++++.++|+|||++++...
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3 9999999888765431 15889999999999999998765
No 150
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.17 E-value=5.1e-11 Score=104.88 Aligned_cols=99 Identities=16% Similarity=0.265 Sum_probs=73.4
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC------------CCCCceEEEccCCC--C--CCCC--
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP------------AFPGVEHVGGDMFV--S--VPKG-- 260 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~v~~~~~D~~~--~--~~~~-- 260 (366)
.+..+|||||||+|.++..+++.+|+..++++|+ +.+++.++ ...+++++.+|+.+ + ++.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567899999999999999999999999999998 77766442 23689999999876 3 4444
Q ss_pred CEEEeccccccCChH--H----HHHHHHHHHHhCCCCcEEEEEc
Q 017777 261 DAIFIKWICHDWSDE--H----CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 261 D~i~~~~~lh~~~~~--~----~~~~L~~~~~~L~pgG~lli~e 298 (366)
|.|++...-.++... . ...+|+++.++|+|||.|++..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 888764332221100 0 1368999999999999999864
No 151
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.17 E-value=3.5e-11 Score=105.65 Aligned_cols=148 Identities=17% Similarity=0.091 Sum_probs=87.1
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-CCC--------ceEEE-ccCCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-FPG--------VEHVG-GDMFVSV 257 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~--------v~~~~-~D~~~~~ 257 (366)
+..++..+.......+|||||||+|.++..+++. +..+++++|+ +.+++.+++ .++ +.+.. .|+..+.
T Consensus 25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (232)
T 3opn_A 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGR 103 (232)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCC
T ss_pred HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCC
Confidence 4455666652234569999999999999999987 3348999998 777666433 233 33222 2221111
Q ss_pred CCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCch-hhhhhhhcchhhHhhCCCCccCCHHHH
Q 017777 258 PKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSL-ASKVVIHVDCIMLAHNPGGKERTEQEF 336 (366)
Q Consensus 258 ~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~e~ 336 (366)
+ |.+.+..++.++ ..+|++++++|||||++++.. .+....... ........+.. ....+.+++
T Consensus 104 ~--d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~~e~~~~~~~~~G~~~d~~-------~~~~~~~~l 167 (232)
T 3opn_A 104 P--SFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQFEAGREQVGKNGIIRDPK-------VHQMTIEKV 167 (232)
T ss_dssp C--SEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHHHHSCHHHHC-CCCCCCHH-------HHHHHHHHH
T ss_pred C--CEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--CcccccCHHHhCcCCeecCcc-------hhHHHHHHH
Confidence 1 444444444332 478999999999999999853 111000000 00000000100 011367899
Q ss_pred HHHHHHcCCceeEEEEC
Q 017777 337 RALAKAAGFQGFQVVSS 353 (366)
Q Consensus 337 ~~ll~~aGf~~~~~~~~ 353 (366)
.++++++||++..+...
T Consensus 168 ~~~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 168 LKTATQLGFSVKGLTFS 184 (232)
T ss_dssp HHHHHHHTEEEEEEEEC
T ss_pred HHHHHHCCCEEEEEEEc
Confidence 99999999998877654
No 152
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.17 E-value=6.6e-11 Score=105.12 Aligned_cols=108 Identities=17% Similarity=0.169 Sum_probs=83.1
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHh--CCCCeEEEecc-hhHHhhCCCC---C-------C------------
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISK--YPSIKGINFDL-PHVIQDAPAF---P-------G------------ 245 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~---~-------~------------ 245 (366)
.++..+. .....+|||+|||+|.++..+++. .+..+++++|+ +.+++.+++. . +
T Consensus 42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 42 RALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp HHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 3444443 235679999999999999999988 67788999998 8888777632 1 2
Q ss_pred -------------ce-------------EEEccCCCCC------CC--CCEEEeccccccCCh-------HHHHHHHHHH
Q 017777 246 -------------VE-------------HVGGDMFVSV------PK--GDAIFIKWICHDWSD-------EHCVKFLKNC 284 (366)
Q Consensus 246 -------------v~-------------~~~~D~~~~~------~~--~D~i~~~~~lh~~~~-------~~~~~~L~~~ 284 (366)
++ ++++|++++. +. .|+|+++..++...+ +....+++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 67 9999998843 32 399999877665442 5567899999
Q ss_pred HHhCCCCcEEEEEcc
Q 017777 285 YEALPVNGKVIVAES 299 (366)
Q Consensus 285 ~~~L~pgG~lli~e~ 299 (366)
.++|+|||+++++..
T Consensus 201 ~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 201 ASALPAHAVIAVTDR 215 (250)
T ss_dssp HHHSCTTCEEEEEES
T ss_pred HHhcCCCcEEEEeCc
Confidence 999999999998554
No 153
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.16 E-value=5.6e-11 Score=107.29 Aligned_cols=127 Identities=19% Similarity=0.185 Sum_probs=95.3
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~ 259 (366)
...++..++ +.+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++. ++++++.+|+.+.++.
T Consensus 101 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 101 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 345566565 677789999999999999999999 67889999998 7777766542 4789999998875543
Q ss_pred --CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH
Q 017777 260 --GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR 337 (366)
Q Consensus 260 --~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 337 (366)
.|+|++. .++. ..+|+++.++|+|||++++.....+ ...++.
T Consensus 180 ~~~D~V~~~-----~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~-----------------------------~~~~~~ 223 (277)
T 1o54_A 180 KDVDALFLD-----VPDP--WNYIDKCWEALKGGGRFATVCPTTN-----------------------------QVQETL 223 (277)
T ss_dssp CSEEEEEEC-----CSCG--GGTHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred CccCEEEEC-----CcCH--HHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHH
Confidence 3999872 3333 3789999999999999999764210 123556
Q ss_pred HHHHHcCCceeEEEE
Q 017777 338 ALAKAAGFQGFQVVS 352 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~ 352 (366)
+.|+++||..+++..
T Consensus 224 ~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 224 KKLQELPFIRIEVWE 238 (277)
T ss_dssp HHHHHSSEEEEEEEC
T ss_pred HHHHHCCCceeEEEE
Confidence 677788888776654
No 154
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.15 E-value=9.5e-11 Score=104.05 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=78.0
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC---CCC---CCCEE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV---SVP---KGDAI 263 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~~---~~D~i 263 (366)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|..+ ..+ ..|+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 34578999999999999999999988 889999998 7777766542 479999999865 222 23999
Q ss_pred EeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 264 FIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 264 ~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
++... ......+|+++.++|+|||+|++.+...
T Consensus 141 ~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 141 FIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp EECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 88543 3345678999999999999999876654
No 155
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.14 E-value=4.9e-11 Score=104.96 Aligned_cols=102 Identities=20% Similarity=0.227 Sum_probs=81.2
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC-
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK- 259 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~- 259 (366)
....++..+. ..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. .++++..+|...+++.
T Consensus 79 ~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (235)
T 1jg1_A 79 MVAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 156 (235)
T ss_dssp HHHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCC
Confidence 3445666565 66778999999999999999999987 78999997 7777766542 4689999998545542
Q ss_pred --CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 --GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 --~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.|+|++..+++++++ ++.+.|+|||++++...
T Consensus 157 ~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 157 APYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred CCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence 399999999998764 57889999999999654
No 156
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.14 E-value=6.2e-11 Score=103.27 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=77.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC---C-----CCCCE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS---V-----PKGDA 262 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~-----~~~D~ 262 (366)
.+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|..+. . ...|+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 4578999999999999999999998 789999998 7777766532 4699999998652 1 22499
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
|++.... +....+++++.++|+|||.+++.+...+
T Consensus 137 v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 137 IFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp EEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred EEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 9876543 3345889999999999998888766543
No 157
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.13 E-value=1.5e-10 Score=98.20 Aligned_cols=100 Identities=11% Similarity=-0.059 Sum_probs=79.2
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-C--CC-C-CCEEEecc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-S--VP-K-GDAIFIKW 267 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~-~-~D~i~~~~ 267 (366)
.+..+|||+|||+|.++..++.. +..+++++|+ +.+++.++++ ++++++++|+.+ . .+ . .|+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35689999999999999987774 5558999998 8888777653 579999999876 2 32 2 39999988
Q ss_pred ccccCChHHHHHHHHHHHH--hCCCCcEEEEEcccc
Q 017777 268 ICHDWSDEHCVKFLKNCYE--ALPVNGKVIVAESIL 301 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~--~L~pgG~lli~e~~~ 301 (366)
.+|+. .++...+++.+.+ +|+|||.+++.....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 87653 3566789999999 999999999976543
No 158
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.12 E-value=4.5e-11 Score=115.91 Aligned_cols=106 Identities=19% Similarity=0.141 Sum_probs=85.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceEEEccCCC-CCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGDMFV-SVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~ 260 (366)
.+.++..+. ..+..+|||||||+|.++..+++ .+..+++++|+.++++.+++. ++++++.+|+.+ +.+..
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 345566554 45668999999999999998877 577799999985576665431 679999999988 66654
Q ss_pred -CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
|+|++..++|++..++....+.+++++|+|||++++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 999998888887777777888899999999999985
No 159
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.12 E-value=8e-11 Score=101.55 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=79.6
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCCCCC-C--
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFVSVP-K-- 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~~-~-- 259 (366)
..++..+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|..+..+ .
T Consensus 67 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (210)
T 3lbf_A 67 ARMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP 143 (210)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence 34555555 667889999999999999999998 568999998 777776654 2579999999887332 2
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
.|+|++..++|++++ .+.+.|+|||++++.-..
T Consensus 144 ~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 144 FDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred ccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 399999999999875 478899999999997653
No 160
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.12 E-value=3.5e-10 Score=99.19 Aligned_cols=131 Identities=14% Similarity=0.084 Sum_probs=101.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC--C-CCEEEeccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP--K-GDAIFIKWI 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~--~-~D~i~~~~~ 268 (366)
.+..+|||||||+|.++..+++..|..+++++|+ +.+++.|+++ ++|++..+|.++..+ + .|+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 3568999999999999999999988888999998 7777777642 579999999998443 2 499987655
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCcee
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGF 348 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 348 (366)
- .+-...+|....+.|+++++|++.-.. ..+.++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~L~~~~~lIlq~~~-------------------------------~~~~lr~~L~~~Gf~i~ 144 (244)
T 3gnl_A 100 G----GTLIRTILEEGAAKLAGVTKLILQPNI-------------------------------AAWQLREWSEQNNWLIT 144 (244)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHHHHHHHHHTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCCCCEEEEEcCC-------------------------------ChHHHHHHHHHCCCEEE
Confidence 3 345678999999999999999885320 25678899999999986
Q ss_pred EEE---ECCCceeEEEEEec
Q 017777 349 QVV---SSAFNTYIMEFLKS 365 (366)
Q Consensus 349 ~~~---~~~~~~~vie~~k~ 365 (366)
+-. ..+-++-+|.+.+.
T Consensus 145 ~E~lv~e~~k~Yeii~~~~~ 164 (244)
T 3gnl_A 145 SEAILREDNKVYEIMVLAPS 164 (244)
T ss_dssp EEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEECCEEEEEEEEEeC
Confidence 543 33456677777653
No 161
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.11 E-value=9.1e-11 Score=101.57 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=80.8
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC-C-
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP-K- 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~- 259 (366)
..++..+. ..+..+|||||||+|.++..+++.. |+.+++++|. +.+++.+++. +++++..+|+..+.+ .
T Consensus 67 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 67 GMMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred HHHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence 34555554 5677899999999999999999987 6679999997 7777776542 569999999866444 2
Q ss_pred -CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 -GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.|+|++..++|+++ +++.+.|+|||++++...
T Consensus 146 ~fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 146 PYDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp CEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CeeEEEECCchHHHH--------HHHHHHcCCCcEEEEEEC
Confidence 39999999999876 367889999999999754
No 162
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.11 E-value=2.2e-10 Score=102.37 Aligned_cols=99 Identities=11% Similarity=0.183 Sum_probs=75.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------C---CCceEEEccCCCC--------CCC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------F---PGVEHVGGDMFVS--------VPK 259 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~---~~v~~~~~D~~~~--------~~~ 259 (366)
..+..+|||+|||+|.++..++.++|+.+++++|+ +.+++.+++ . ++++++++|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45668999999999999999999999999999998 777765543 1 2589999999864 233
Q ss_pred --CCEEEeccccccC----------------ChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 260 --GDAIFIKWICHDW----------------SDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 260 --~D~i~~~~~lh~~----------------~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
.|+|+++..++.. .......+++.+.++|+|||+++++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 3999997443321 1122468899999999999999885
No 163
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.11 E-value=1.6e-10 Score=107.39 Aligned_cols=103 Identities=19% Similarity=0.199 Sum_probs=77.5
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceEEEccCCC-CCCC-C-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGDMFV-SVPK-G- 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~-~- 260 (366)
.+...+. ..+..+|||||||+|.++..+++. +..+++++|..++++.+++. ++++++.+|+.+ +++. .
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 3444444 556789999999999999998886 44589999985577666542 689999999987 6663 3
Q ss_pred CEEEeccccccC-ChHHHHHHHHHHHHhCCCCcEEE
Q 017777 261 DAIFIKWICHDW-SDEHCVKFLKNCYEALPVNGKVI 295 (366)
Q Consensus 261 D~i~~~~~lh~~-~~~~~~~~L~~~~~~L~pgG~ll 295 (366)
|+|++..+.+.+ .......+|+++.++|||||+++
T Consensus 133 D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 999987633222 12345678999999999999987
No 164
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.11 E-value=7.7e-11 Score=104.22 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=77.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--C-C-----CC-CCE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--S-V-----PK-GDA 262 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~-----~~-~D~ 262 (366)
+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.++++ ++++++.+|..+ + . +. .|+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 468999999999999999999986 789999997 7776655432 589999999865 2 1 22 399
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
|++... ......+|+++.++|+|||.|++.+.....
T Consensus 140 V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 140 IFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 987644 234567899999999999999998776543
No 165
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.11 E-value=2e-10 Score=103.78 Aligned_cols=120 Identities=14% Similarity=0.084 Sum_probs=91.1
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCCC-CEEEecccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPKG-DAIFIKWIC 269 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~~l 269 (366)
.+..+|||+|||+|.++..+++..+. +++++|+ +.+++.++++ .+++++++|+.+ ..+.. |+|++....
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 45689999999999999999998776 8999998 8888776542 358999999988 33333 999885332
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
....+++++.++|+|||++++.+...... ......+++.+.++++||++..
T Consensus 203 ------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 203 ------RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred ------hHHHHHHHHHHHCCCCeEEEEEEeecccc-----------------------ccccHHHHHHHHHHHcCCeeEE
Confidence 12478999999999999999987643110 0012367788999999998765
No 166
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.07 E-value=2.8e-10 Score=100.19 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=75.1
Q ss_pred CCeEEEEeCCccHHHHHHHHh----CCCCeEEEecc-hhHHhhCCC-CCCceEEEccCCCC--C---CC--CCEEEeccc
Q 017777 202 LNSVVDVGGGIGATLNMIISK----YPSIKGINFDL-PHVIQDAPA-FPGVEHVGGDMFVS--V---PK--GDAIFIKWI 268 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~--~---~~--~D~i~~~~~ 268 (366)
..+|||||||+|..+..+++. .|+.+++++|+ +.+++.++. .++++++.+|..+. . +. .|+|++...
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~ 161 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 161 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence 579999999999999999987 68899999998 777777654 36899999998762 1 22 399987654
Q ss_pred cccCChHHHHHHHHHHHH-hCCCCcEEEEEcc
Q 017777 269 CHDWSDEHCVKFLKNCYE-ALPVNGKVIVAES 299 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~-~L~pgG~lli~e~ 299 (366)
|. +...+|+++.+ .|+|||+|++.+.
T Consensus 162 -~~----~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 162 -HA----NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp -CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred -hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 42 34578999997 9999999999765
No 167
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.07 E-value=1.3e-10 Score=101.27 Aligned_cols=98 Identities=12% Similarity=0.171 Sum_probs=76.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC---CCC------CCC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV---SVP------KGD 261 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~~------~~D 261 (366)
.+..+|||||||+|..+..+++.++ +.+++++|+ +.+++.++++ ++++++.+|..+ ..+ ..|
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 3568999999999999999999875 789999998 8888777652 469999999744 222 239
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
+|++....+++. ....+++.+ ++|+|||+|++.+..
T Consensus 137 ~V~~d~~~~~~~--~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKDRYL--PDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EEEECSCGGGHH--HHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEcCCcccch--HHHHHHHhc-cccCCCeEEEEeCCC
Confidence 999988777643 234677777 999999999886654
No 168
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.05 E-value=1.1e-10 Score=102.64 Aligned_cols=97 Identities=22% Similarity=0.257 Sum_probs=77.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC----C-CCEEEec
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP----K-GDAIFIK 266 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~----~-~D~i~~~ 266 (366)
.+..+|||||||+|..+..+++..|+.+++++|+ +.+++.+++. ++++++.+|+.+..+ . .|+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 3568999999999999999999888999999998 8887776542 489999999977322 2 3999875
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
... .....+++.+.+.|+|||+|++-+...
T Consensus 150 ~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 150 AAK-----AQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp TTS-----SSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred CcH-----HHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 432 234578999999999999998866544
No 169
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.05 E-value=1.6e-10 Score=107.75 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=79.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCC------ccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCC-
Q 017777 189 MKKILENYKGFEGLNSVVDVGGG------IGATLNMIISK-YPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVP- 258 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~- 258 (366)
++.++..+. .+..+||||||| +|..+..+++. +|+.+++++|+ +.+. ...++++++++|+.+ ++.
T Consensus 206 Ye~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~ 280 (419)
T 3sso_A 206 YDRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLD 280 (419)
T ss_dssp HHHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHH
T ss_pred HHHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhh
Confidence 445555443 356899999999 67777777765 59999999998 6553 234789999999987 443
Q ss_pred ------C-CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 259 ------K-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 259 ------~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
. .|+|++.. .|++ .+....|++++++|||||++++.|..
T Consensus 281 ~l~~~d~sFDlVisdg-sH~~--~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 281 RIARRYGPFDIVIDDG-SHIN--AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HHHHHHCCEEEEEECS-CCCH--HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred hhhcccCCccEEEECC-cccc--hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 2 39998864 4654 34568899999999999999998875
No 170
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.05 E-value=1.4e-10 Score=102.85 Aligned_cols=94 Identities=18% Similarity=0.321 Sum_probs=71.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC--------------CCCCceEEEccCCCC----CCCC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP--------------AFPGVEHVGGDMFVS----VPKG 260 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------~~~~v~~~~~D~~~~----~~~~ 260 (366)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++ ...+++++.+|+.+. ++.+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4568999999999999999999999999999997 77766542 235799999998862 3333
Q ss_pred --CEEEeccccccCChHHH-----------HHHHHHHHHhCCCCcEEEEEc
Q 017777 261 --DAIFIKWICHDWSDEHC-----------VKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 261 --D~i~~~~~lh~~~~~~~-----------~~~L~~~~~~L~pgG~lli~e 298 (366)
|.|++. ++++.. ..+++++.++|+|||+|++..
T Consensus 128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 666532 222211 378999999999999999953
No 171
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.05 E-value=2e-10 Score=108.31 Aligned_cols=100 Identities=19% Similarity=0.153 Sum_probs=78.1
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceEEEccCCC-CCCCC-CEEEecccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGDMFV-SVPKG-DAIFIKWIC 269 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~~l 269 (366)
..+..+|||||||+|.++..+++.. ..+++++|...+++.+++. ++++++.+|+.+ +.+.. |+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 5567899999999999999999873 3489999976666655432 569999999987 55544 999997666
Q ss_pred ccCCh-HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 270 HDWSD-EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 270 h~~~~-~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
|.+.. .....+++.+.++|+|||.+++.+.
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 66543 2355789999999999999988654
No 172
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.04 E-value=2.1e-10 Score=102.89 Aligned_cols=93 Identities=20% Similarity=0.209 Sum_probs=76.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCC-CCCCC--CEEEeccccccCCh
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSD 274 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~ 274 (366)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. .++.+..+|+.+ +++.+ |+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 3567999999999999999999988889999998 8888777643 679999999876 55543 999986653
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
..++++.++|+|||++++..+..
T Consensus 159 ----~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ----hhHHHHHHhcCCCcEEEEEEcCH
Confidence 24899999999999999987643
No 173
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.04 E-value=9.4e-11 Score=102.56 Aligned_cols=136 Identities=10% Similarity=0.002 Sum_probs=100.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCC-CCC-CCEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVS-VPK-GDAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~-~~~-~D~i~~~~~lh~ 271 (366)
..+.+|||||||.|-++..+....|..+++++|+ +.+++.++++ .+.++...|+... .+. +|++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999998 8888776643 4578899999873 333 499999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
+.++.....+ ++.++|+|+|.++-.+.-.=..+. .+........|++.+.+.|..+ +..
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs-------------------~gm~~~Y~~~~e~~~~~~g~~~-~~~ 269 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRS-------------------KGMFQNYSQSFESQARERSCRI-QRL 269 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEECC--------------------------CHHHHHHHHHHHHHHHHTCCE-EEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCC-------------------cchhhHHHHHHHHHHHhcCCce-eee
Confidence 8877655666 899999999999887762111110 0111123678999999999854 444
Q ss_pred ECCCc
Q 017777 352 SSAFN 356 (366)
Q Consensus 352 ~~~~~ 356 (366)
.+++-
T Consensus 270 ~~~nE 274 (281)
T 3lcv_B 270 EIGNE 274 (281)
T ss_dssp EETTE
T ss_pred eecCe
Confidence 44433
No 174
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.04 E-value=1.5e-10 Score=107.94 Aligned_cols=96 Identities=19% Similarity=0.183 Sum_probs=74.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceEEEccCCC-CCCCC--CEEEecccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGDMFV-SVPKG--DAIFIKWIC 269 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~--D~i~~~~~l 269 (366)
.+..+|||||||+|.++..+++. +..+++++|+.++++.+++. ++++++.+|+.+ ++|.. |+|++..+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 35689999999999999999887 56689999985576666532 459999999988 66633 999987654
Q ss_pred ccC-ChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 270 HDW-SDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 270 h~~-~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
|.+ ..+....+++.+.++|||||+++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 443 123345789999999999999874
No 175
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.04 E-value=2.6e-10 Score=103.58 Aligned_cols=99 Identities=18% Similarity=0.137 Sum_probs=73.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----------CCCceEEEccCCCC--CC-C-CCEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----------FPGVEHVGGDMFVS--VP-K-GDAI 263 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~--~~-~-~D~i 263 (366)
.++.+|||||||+|..+..+++..+..+++++|+ +.+++.+++ .++++++.+|..+. .+ . .|+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 4578999999999999999998777788999998 888876643 25899999998873 22 2 3999
Q ss_pred EeccccccCChHHH--HHHHHHHHHhCCCCcEEEEEc
Q 017777 264 FIKWICHDWSDEHC--VKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 264 ~~~~~lh~~~~~~~--~~~L~~~~~~L~pgG~lli~e 298 (366)
++...-+.-+.... ..+++.++++|+|||.+++..
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 198 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEec
Confidence 98554433232222 579999999999999999864
No 176
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.04 E-value=2.3e-10 Score=100.16 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=79.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----CCceEEEccCCCCCC--C-C
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----PGVEHVGGDMFVSVP--K-G 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~~~~--~-~ 260 (366)
...++..+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .+++++.+|+.+..+ . .
T Consensus 59 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f 135 (231)
T 1vbf_A 59 GIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY 135 (231)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence 345555555 6677899999999999999999986 68999997 7777766542 379999999876333 2 3
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
|+|++..++|++++ ++.+.|+|||++++....
T Consensus 136 D~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 136 DRVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred cEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 99999999998764 477899999999998653
No 177
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.04 E-value=7.3e-10 Score=94.26 Aligned_cols=106 Identities=19% Similarity=0.294 Sum_probs=77.5
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCCC----------
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSV---------- 257 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~---------- 257 (366)
.+.++.+.+..+.+..+|||+|||+|.++..+++. ..+++++|+.++ ...++++++++|+.+..
T Consensus 12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~ 85 (191)
T 3dou_A 12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALR 85 (191)
T ss_dssp HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhh
Confidence 35567777764567789999999999999999887 678999998433 22468999999998731
Q ss_pred ----CCCCEEEeccccccCC----h-----HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 258 ----PKGDAIFIKWICHDWS----D-----EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 258 ----~~~D~i~~~~~lh~~~----~-----~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+..|+|++........ + +....+|+.+.++|||||.+++...
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 2339999864322111 1 1235789999999999999997543
No 178
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.04 E-value=2.5e-10 Score=105.09 Aligned_cols=102 Identities=22% Similarity=0.283 Sum_probs=80.8
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC--
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP-- 258 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-- 258 (366)
...++..+. ..+..+|||||||+|.++..+++..+ +.+++++|+ +.+++.+++. .+++++.+|+.+..+
T Consensus 64 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~ 142 (317)
T 1dl5_A 64 MALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF 142 (317)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccC
Confidence 334555555 66778999999999999999999877 478999997 7777766542 569999999877322
Q ss_pred C-CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 259 K-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 259 ~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. .|+|++..++|+++ +++.+.|||||++++...
T Consensus 143 ~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 143 SPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBC
T ss_pred CCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEEC
Confidence 2 39999999999876 457789999999999754
No 179
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.03 E-value=1.5e-10 Score=105.60 Aligned_cols=98 Identities=17% Similarity=0.292 Sum_probs=77.0
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC---CCC-C-CCEEEecccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV---SVP-K-GDAIFIKWIC 269 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~---~~~-~-~D~i~~~~~l 269 (366)
..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ ++++++.+|..+ ..+ . .|+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 34999999999999999999999999999998 8888877642 689999999865 333 2 3999986544
Q ss_pred ccCChHH--HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 270 HDWSDEH--CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 270 h~~~~~~--~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+...... ...+++.++++|+|||.+++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 4322221 15789999999999999988653
No 180
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.03 E-value=2.9e-10 Score=107.06 Aligned_cols=96 Identities=14% Similarity=0.040 Sum_probs=79.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCC-C-CCEEEecccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVP-K-GDAIFIKWICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~-~-~D~i~~~~~lh~ 271 (366)
...+|||+|||+|.++..+++. +.+++++|+ +.+++.++++ .+++++.+|+.+ ..+ . .|+|+++..+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 4679999999999999999986 568999997 7788777642 358999999988 344 2 399999999987
Q ss_pred ---CChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 272 ---WSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 272 ---~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
...+....+++++++.|+|||+++++.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 334667799999999999999999974
No 181
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.03 E-value=4.9e-10 Score=97.60 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=74.7
Q ss_pred CCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC--------CCceEEEccCCC---CC-CC-CCEEEec
Q 017777 202 LNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFV---SV-PK-GDAIFIK 266 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~---~~-~~-~D~i~~~ 266 (366)
..+|||||||+|..+..+++.+| +.+++++|+ +.+++.++++ ++++++.+|..+ .. +. .|+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999875 789999998 7777766542 479999998765 23 22 3999876
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
... .....+++.+.+.|+|||.|++.+...
T Consensus 137 ~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSP-----MDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp CCT-----TTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CcH-----HHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 433 234578999999999999999966654
No 182
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.02 E-value=2e-10 Score=96.28 Aligned_cols=107 Identities=11% Similarity=0.007 Sum_probs=78.5
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--C-CCC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--S-VPK 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~~~ 259 (366)
.+.+.+.......+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+ + .+.
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG 99 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence 34444432345689999999999999999887 6678999998 7787776542 368999999876 2 223
Q ss_pred -CCEEEeccccccCChHHHHHHHHHHH--HhCCCCcEEEEEcccc
Q 017777 260 -GDAIFIKWICHDWSDEHCVKFLKNCY--EALPVNGKVIVAESIL 301 (366)
Q Consensus 260 -~D~i~~~~~lh~~~~~~~~~~L~~~~--~~L~pgG~lli~e~~~ 301 (366)
.|+|++...+|. .....+++.+. ++|+|||++++.....
T Consensus 100 ~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 100 RFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp CEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 399999876643 23456677776 8999999999976543
No 183
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.01 E-value=2e-10 Score=100.77 Aligned_cols=97 Identities=13% Similarity=0.204 Sum_probs=78.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC--C---CC-CCEEEe
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS--V---PK-GDAIFI 265 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~--~---~~-~D~i~~ 265 (366)
.+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++. .+++++.+|..+. . +. .|+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 3567999999999999999999999899999998 7777766542 4799999998762 1 22 399998
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
....+ ....+|+++.++|+|||++++.+...
T Consensus 133 ~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 133 DAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp EGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred CCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 77654 24578999999999999999976544
No 184
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.01 E-value=2.5e-10 Score=99.45 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=76.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC---C------CCCCE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS---V------PKGDA 262 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~------~~~D~ 262 (366)
+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|..+. . ...|+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 467999999999999999999987 789999998 7777766542 4699999998652 1 22399
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
|++... ......+++++.++|+|||+|++.+...+
T Consensus 144 v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 144 IYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred EEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 986443 23456789999999999999999876543
No 185
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.00 E-value=2.2e-10 Score=106.36 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=77.3
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCC-----------------CCCceEEE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPA-----------------FPGVEHVG 250 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~~v~~~~ 250 (366)
..++..+. ..+..+|||||||+|.++..+++. .|+.+++++|+ +.+++.+++ ..+++++.
T Consensus 95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 34555555 667789999999999999999998 47789999998 777766543 15799999
Q ss_pred ccCCCC---CCC--CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 251 GDMFVS---VPK--GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 251 ~D~~~~---~~~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+|+.+. ++. .|+|++... ++ ..+++.+.++|+|||++++...
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~~-----~~--~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDML-----NP--HVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp SCTTCCC-------EEEEEECSS-----ST--TTTHHHHGGGEEEEEEEEEEES
T ss_pred CChHHcccccCCCCeeEEEECCC-----CH--HHHHHHHHHhcCCCcEEEEEeC
Confidence 999872 333 299987432 12 1379999999999999998765
No 186
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.00 E-value=1.6e-09 Score=92.10 Aligned_cols=105 Identities=19% Similarity=0.226 Sum_probs=76.5
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC---------CeEEEecchhHHhhCCCCCCceEE-EccCCC-C---
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS---------IKGINFDLPHVIQDAPAFPGVEHV-GGDMFV-S--- 256 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~v~~~-~~D~~~-~--- 256 (366)
++...+..+.+..+|||||||+|.++..+++.++. .+++++|+.++ ....+++++ .+|+.. +
T Consensus 12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHHHHH
T ss_pred HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHHHHH
Confidence 44444543456789999999999999999999865 78999998542 123678999 899876 2
Q ss_pred -----CCC--CCEEEeccccccC----ChHH-----HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 257 -----VPK--GDAIFIKWICHDW----SDEH-----CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 257 -----~~~--~D~i~~~~~lh~~----~~~~-----~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+. .|+|++...+|.. .+.. ...+++++.++|+|||++++...
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 232 3999986654431 1111 14789999999999999998754
No 187
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.00 E-value=5.3e-10 Score=98.54 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=76.1
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--C-C----------
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--S-V---------- 257 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~---------- 257 (366)
.+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. .+++++.+|..+ + .
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 3568999999999999999999987 689999998 7777766542 358999998754 1 1
Q ss_pred -------CCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 258 -------PKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 258 -------~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
...|+|++.... +....+++++.+.|+|||++++.+...
T Consensus 139 ~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp TTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred ccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 223999887443 344588999999999999999976544
No 188
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.00 E-value=6.9e-10 Score=100.46 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=74.2
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC-CC---CEEEec--
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP-KG---DAIFIK-- 266 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~-~~---D~i~~~-- 266 (366)
...+|||+|||+|.++..++.. |+.+++++|+ +.+++.++++ .+++++++|++++.+ .. |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4579999999999999999999 9999999998 8888777642 359999999987432 45 999996
Q ss_pred ----------cccccCChH------HHHHHHHHHH-HhCCCCcEEEE
Q 017777 267 ----------WICHDWSDE------HCVKFLKNCY-EALPVNGKVIV 296 (366)
Q Consensus 267 ----------~~lh~~~~~------~~~~~L~~~~-~~L~pgG~lli 296 (366)
.+. +.+.. +...+++++. +.|+|||++++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 222 22221 1127899999 99999999997
No 189
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=98.99 E-value=2.2e-09 Score=96.99 Aligned_cols=96 Identities=11% Similarity=0.065 Sum_probs=71.1
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc--hhHHhhCCCC----------------CCceEEEccCCCC---C
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL--PHVIQDAPAF----------------PGVEHVGGDMFVS---V 257 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~----------------~~v~~~~~D~~~~---~ 257 (366)
.....+|||||||+|.++..+++.. ..+++++|+ +.+++.++++ +++++...|..+. .
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3456799999999999999888753 348999998 5666554321 2688886664431 1
Q ss_pred -----CC-CCEEEeccccccCChHHHHHHHHHHHHhCC---C--CcEEEEE
Q 017777 258 -----PK-GDAIFIKWICHDWSDEHCVKFLKNCYEALP---V--NGKVIVA 297 (366)
Q Consensus 258 -----~~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~---p--gG~lli~ 297 (366)
+. .|+|++..++|+.++ ...+++.+.++|+ | ||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 22 399999999988543 4688999999999 9 9988774
No 190
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.99 E-value=1.6e-09 Score=93.93 Aligned_cols=96 Identities=13% Similarity=0.043 Sum_probs=78.3
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCC-CCEEEeccccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPK-GDAIFIKWICH 270 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~-~D~i~~~~~lh 270 (366)
+..+.+|||||||+|-++..+. +..+++++|+ +.+++.+++. .+..+...|... +.+. +|++++.-++|
T Consensus 103 ~~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 103 AETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp SCCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHH
Confidence 3457899999999999998777 8889999998 8888777643 567889999987 5444 49999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 271 DWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
++.+++....+ ++.+.|+|++.++-.+
T Consensus 180 ~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 180 LLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred HhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 98776655555 8999999998887776
No 191
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=98.99 E-value=1.2e-09 Score=98.54 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=80.0
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCC---------CCCceEEEccCCC-C
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPA---------FPGVEHVGGDMFV-S 256 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~-~ 256 (366)
...++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.+|+.+ +
T Consensus 88 ~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 88 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 345666665 677789999999999999999986 57889999998 777766543 2479999999877 4
Q ss_pred CCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 257 VPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 257 ~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
++.. |+|++. .++. ..+|+++.++|+|||++++...
T Consensus 167 ~~~~~~D~v~~~-----~~~~--~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 167 LPDGSVDRAVLD-----MLAP--WEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CCTTCEEEEEEE-----SSCG--GGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCceeEEEEC-----CcCH--HHHHHHHHHhCCCCCEEEEEeC
Confidence 5433 999872 2323 2679999999999999999765
No 192
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=98.97 E-value=5.5e-10 Score=103.30 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=73.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceEEEccCCC-CCC-CC-CEEEecccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGDMFV-SVP-KG-DAIFIKWIC 269 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~-~~-D~i~~~~~l 269 (366)
.+..+|||||||+|.++..+++. +..+++++|..++++.+++. ++++++.+|+.+ +.+ +. |+|++..+.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 34679999999999999988876 44589999985566655432 579999999987 566 33 999987654
Q ss_pred ccCC-hHHHHHHHHHHHHhCCCCcEEEE
Q 017777 270 HDWS-DEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 270 h~~~-~~~~~~~L~~~~~~L~pgG~lli 296 (366)
|.+. ......+|+.+.++|+|||+++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 4432 22345789999999999999974
No 193
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=98.97 E-value=1.3e-09 Score=97.47 Aligned_cols=107 Identities=16% Similarity=0.051 Sum_probs=74.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC--C------CceEE--EccCCC-CC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF--P------GVEHV--GGDMFV-SV 257 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------~v~~~--~~D~~~-~~ 257 (366)
+..+.+. ..+.+..+|||||||+|.++..+++. .+++++|+.++...+++. . ++.++ ++|+.+ +.
T Consensus 63 L~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~ 138 (265)
T 2oxt_A 63 LAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPV 138 (265)
T ss_dssp HHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCC
T ss_pred HHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCC
Confidence 4455554 22556789999999999999988886 589999984454333222 2 68888 899886 42
Q ss_pred CCCCEEEeccccccCChH---H--HHHHHHHHHHhCCCCc--EEEEEccc
Q 017777 258 PKGDAIFIKWICHDWSDE---H--CVKFLKNCYEALPVNG--KVIVAESI 300 (366)
Q Consensus 258 ~~~D~i~~~~~lh~~~~~---~--~~~~L~~~~~~L~pgG--~lli~e~~ 300 (366)
...|+|++... +..+.. + ...+|+.+.++|+||| .+++....
T Consensus 139 ~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 139 ERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 23499999766 443221 1 1248999999999999 88885543
No 194
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=98.96 E-value=3.3e-10 Score=95.57 Aligned_cols=106 Identities=12% Similarity=-0.004 Sum_probs=77.1
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCC-----
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSV----- 257 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~----- 257 (366)
.+.+.+.......+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++. ++++++.+|+.+..
T Consensus 34 ~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (187)
T 2fhp_A 34 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE 112 (187)
T ss_dssp HHHHHHCSCCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh
Confidence 3444443234568999999999999998887 45578999998 8888777642 46999999987621
Q ss_pred -CC-CCEEEeccccccCChHHHHHHHHHH--HHhCCCCcEEEEEccc
Q 017777 258 -PK-GDAIFIKWICHDWSDEHCVKFLKNC--YEALPVNGKVIVAESI 300 (366)
Q Consensus 258 -~~-~D~i~~~~~lh~~~~~~~~~~L~~~--~~~L~pgG~lli~e~~ 300 (366)
+. .|+|++...+|.... ..+++.+ .++|+|||.+++....
T Consensus 113 ~~~~fD~i~~~~~~~~~~~---~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 113 EKLQFDLVLLDPPYAKQEI---VSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp TTCCEEEEEECCCGGGCCH---HHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred cCCCCCEEEECCCCCchhH---HHHHHHHHHhcccCCCCEEEEEeCC
Confidence 23 399999877664333 3456666 8889999999987554
No 195
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=98.95 E-value=3.4e-10 Score=97.63 Aligned_cols=97 Identities=19% Similarity=0.162 Sum_probs=76.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--CCCC-CCEEEeccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--SVPK-GDAIFIKWI 268 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~~~-~D~i~~~~~ 268 (366)
+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|..+ +... .|+|++...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 467999999999999999999987 789999998 8888776642 469999999865 2222 588887632
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
......+++++.++|+|||++++.+....
T Consensus 136 -----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 136 -----VFNGADVLERMNRCLAKNALLIAVNALRR 164 (210)
T ss_dssp -----TSCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred -----hhhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence 22346889999999999999998765543
No 196
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=98.95 E-value=1.6e-09 Score=101.25 Aligned_cols=110 Identities=18% Similarity=0.067 Sum_probs=84.2
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVP 258 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~ 258 (366)
....++.... +.+..+|||+|||+|.++..++... |+.+++++|+ +.+++.++++ .+++++++|+.+ +.+
T Consensus 191 la~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~ 269 (354)
T 3tma_A 191 LAQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF 269 (354)
T ss_dssp HHHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred HHHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence 3444555554 7778899999999999999999988 8899999998 8888777643 379999999987 433
Q ss_pred -C-CCEEEeccccccC-C-hHH----HHHHHHHHHHhCCCCcEEEEEc
Q 017777 259 -K-GDAIFIKWICHDW-S-DEH----CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 259 -~-~D~i~~~~~lh~~-~-~~~----~~~~L~~~~~~L~pgG~lli~e 298 (366)
. .|+|+++..++.. . ..+ ...+++.+++.|+|||+++++.
T Consensus 270 ~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 270 FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 2 3999996554321 1 111 2688999999999999999964
No 197
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.94 E-value=2.3e-09 Score=97.84 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=71.2
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-----hhHHhhCC--CC--CCceEEEc-cCCC-CCCC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-----PHVIQDAP--AF--PGVEHVGG-DMFV-SVPK 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~--~~--~~v~~~~~-D~~~-~~~~ 259 (366)
.+.+. ..+.+..+|||||||+|.++..++++ .+++++|+ +..++... .. +++.++++ |+.. +...
T Consensus 73 ~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~ 148 (305)
T 2p41_A 73 WFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPER 148 (305)
T ss_dssp HHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCC
T ss_pred HHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCC
Confidence 44444 32456789999999999999999886 37888887 43333222 12 56899999 8876 3333
Q ss_pred CCEEEeccccc---cCChHH-HHHHHHHHHHhCCCCcEEEEE
Q 017777 260 GDAIFIKWICH---DWSDEH-CVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 260 ~D~i~~~~~lh---~~~~~~-~~~~L~~~~~~L~pgG~lli~ 297 (366)
.|+|++...++ ...+.. ...+|+.+.++|||||.+++.
T Consensus 149 fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 149 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 49999976653 212222 225899999999999988874
No 198
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.94 E-value=1.4e-09 Score=97.79 Aligned_cols=106 Identities=15% Similarity=-0.006 Sum_probs=74.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC--C------CceEE--EccCCC-CC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF--P------GVEHV--GGDMFV-SV 257 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------~v~~~--~~D~~~-~~ 257 (366)
+..+.+... +.+..+|||||||+|.++..+++. .+++++|+.++...+++. . ++.++ .+|+.+ +.
T Consensus 71 L~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~ 146 (276)
T 2wa2_A 71 LAWIDERGG-VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEP 146 (276)
T ss_dssp HHHHHHTTS-CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCC
T ss_pred HHHHHHcCC-CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCC
Confidence 445555422 556789999999999999999886 589999984454333222 2 68899 899876 42
Q ss_pred CCCCEEEeccccccCChH----H-HHHHHHHHHHhCCCCc--EEEEEcc
Q 017777 258 PKGDAIFIKWICHDWSDE----H-CVKFLKNCYEALPVNG--KVIVAES 299 (366)
Q Consensus 258 ~~~D~i~~~~~lh~~~~~----~-~~~~L~~~~~~L~pgG--~lli~e~ 299 (366)
...|+|++... +..+.. . ...+|+.+.++|+||| .+++...
T Consensus 147 ~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 147 FQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred CCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 23499999876 433221 1 1247999999999999 8888544
No 199
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=98.93 E-value=7.9e-10 Score=98.00 Aligned_cols=97 Identities=13% Similarity=0.162 Sum_probs=76.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--C-C------C-CC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--S-V------P-KG 260 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~------~-~~ 260 (366)
.+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.++++ ++++++.+|..+ + . + ..
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3567999999999999999999987 789999998 7777766542 479999999865 2 1 2 24
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
|+|++.... .....+++.+.++|+|||.|++.+...
T Consensus 158 D~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 158 DFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp SEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 999976432 234688999999999999999876543
No 200
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=98.93 E-value=2.7e-09 Score=97.99 Aligned_cols=102 Identities=13% Similarity=0.089 Sum_probs=76.1
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CC-CC-CCEEEec-
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SV-PK-GDAIFIK- 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~-~~-~D~i~~~- 266 (366)
..+..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .+++++++|..+ +. +. .|+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56678999999999999999999875 478999998 7777766542 478999999876 32 32 3999873
Q ss_pred -----cccccCC-------hHH-------HHHHHHHHHHhCCCCcEEEEEccc
Q 017777 267 -----WICHDWS-------DEH-------CVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 267 -----~~lh~~~-------~~~-------~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
.+++..+ .++ ...+|+++.+.|||||+|++....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 2343322 221 258999999999999999997643
No 201
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=98.92 E-value=9.2e-10 Score=96.15 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=74.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC------CCeEEEecc-hhHHhhCCC-----------CCCceEEEccCCCCCCC-
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP------SIKGINFDL-PHVIQDAPA-----------FPGVEHVGGDMFVSVPK- 259 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~~~- 259 (366)
..+..+|||||||+|.++..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|..++.+.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45668999999999999999998765 368999997 777776654 24799999998875543
Q ss_pred --CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 --GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 --~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.|+|++...+|+++ +++.+.|+|||++++.-.
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 39999999998765 567889999999998653
No 202
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=98.91 E-value=3.7e-10 Score=93.71 Aligned_cols=95 Identities=12% Similarity=-0.014 Sum_probs=72.0
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----C-CceEEEccCCCCC------C-CCCEEEecc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----P-GVEHVGGDMFVSV------P-KGDAIFIKW 267 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-~v~~~~~D~~~~~------~-~~D~i~~~~ 267 (366)
+..+|||+|||+|.++..+++..+. ++++|+ +.+++.+++. . +++++.+|+.+.. + ..|+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 4679999999999999999998665 999998 8888777642 2 7999999987521 1 249999988
Q ss_pred ccccCChHHHHHHHHHHH--HhCCCCcEEEEEcccc
Q 017777 268 ICHDWSDEHCVKFLKNCY--EALPVNGKVIVAESIL 301 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~--~~L~pgG~lli~e~~~ 301 (366)
.+|. ..+ .+++.+. ++|+|||.+++.....
T Consensus 119 ~~~~-~~~---~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYAM-DLA---ALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CTTS-CTT---HHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCch-hHH---HHHHHHHhhcccCCCcEEEEEeCCc
Confidence 7762 222 3455555 9999999999876543
No 203
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=98.90 E-value=3.7e-10 Score=96.88 Aligned_cols=96 Identities=15% Similarity=0.059 Sum_probs=73.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCC--CC---CC-CCEEEe
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFV--SV---PK-GDAIFI 265 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~--~~---~~-~D~i~~ 265 (366)
+..+|||+|||+|.++..++.... .+++++|+ +.+++.++++ ++++++.+|+.+ +. .. .|+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 357999999999999998777643 48999998 7888777542 478999999865 21 24 599999
Q ss_pred ccccccCChHHHHHHHHHH--HHhCCCCcEEEEEccc
Q 017777 266 KWICHDWSDEHCVKFLKNC--YEALPVNGKVIVAESI 300 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~--~~~L~pgG~lli~e~~ 300 (366)
...+| .. ....+++.+ .++|+|||.+++....
T Consensus 132 ~~~~~-~~--~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 132 DPPFH-FN--LAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp CCCSS-SC--HHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred CCCCC-Cc--cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 87765 23 345778888 5679999999987654
No 204
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=98.89 E-value=5.8e-09 Score=92.08 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=78.1
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCC-CC-
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSV-PK- 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~-~~- 259 (366)
..++..+. .....+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. +++++..+|+.+.. +.
T Consensus 81 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 81 FYIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence 34555555 667789999999999999999998 678999997 7777766542 57999999998754 43
Q ss_pred C-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 G-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. |+|++. .++. ..+++++.++|+|||++++...
T Consensus 158 ~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 158 IFHAAFVD-----VREP--WHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp CBSEEEEC-----SSCG--GGGHHHHHHHBCTTCEEEEEES
T ss_pred cccEEEEC-----CcCH--HHHHHHHHHHcCCCCEEEEEeC
Confidence 3 999872 2322 3679999999999999999775
No 205
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.88 E-value=8.1e-10 Score=99.96 Aligned_cols=99 Identities=20% Similarity=0.137 Sum_probs=76.4
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC--C-CCC-CCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV--S-VPK-GDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~-~~~-~D~i~ 264 (366)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ + .+. .|+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998777889999998 777776543 2579999999865 1 233 39999
Q ss_pred eccccccCChHHH--HHHHHHHHHhCCCCcEEEEEc
Q 017777 265 IKWICHDWSDEHC--VKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 265 ~~~~lh~~~~~~~--~~~L~~~~~~L~pgG~lli~e 298 (366)
+....+..+.... ..+++.++++|+|||.+++..
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 8654433233222 589999999999999999863
No 206
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.88 E-value=2e-09 Score=93.91 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=74.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-----CCCeEEEecc-hhHHhhCCC-----------CCCceEEEccCCCCC----
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-----PSIKGINFDL-PHVIQDAPA-----------FPGVEHVGGDMFVSV---- 257 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~---- 257 (366)
..+..+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++ ..+++++.+|..+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999986 5679999997 777776653 247999999987633
Q ss_pred -C--CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 258 -P--KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 258 -~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+ ..|+|++...+|++ ++++.+.|+|||++++.-.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEc
Confidence 2 23999999998864 4677889999999999754
No 207
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.87 E-value=6.1e-11 Score=104.61 Aligned_cols=141 Identities=16% Similarity=0.093 Sum_probs=95.9
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCC-CCCEEEeccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVP-KGDAIFIKWICH 270 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~-~~D~i~~~~~lh 270 (366)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.+++. ++++++++|+.+ +.+ ..|+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 56899999999999999999864 78999998 8888776542 479999999887 422 239999999998
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEE
Q 017777 271 DWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQV 350 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 350 (366)
+.++.. ..+.+++++|+|||.+++........ +.... --.....+++..++...|...+..
T Consensus 156 ~~~~~~--~~~~~~~~~L~pgG~~i~~~~~~~~~-------------~~~~~----lp~~~~~~~~~~~l~~~g~~~i~~ 216 (241)
T 3gdh_A 156 GPDYAT--AETFDIRTMMSPDGFEIFRLSKKITN-------------NIVYF----LPRNADIDQVASLAGPGGQVEIEQ 216 (241)
T ss_dssp SGGGGG--SSSBCTTTSCSSCHHHHHHHHHHHCS-------------CEEEE----EETTBCHHHHHHTTCTTCCEEEEE
T ss_pred Ccchhh--hHHHHHHhhcCCcceeHHHHHHhhCC-------------ceEEE----CCCCCCHHHHHHHhccCCCEEEEe
Confidence 866543 36778999999999955533211000 00000 011234677778887777666655
Q ss_pred EECCCceeEEEE
Q 017777 351 VSSAFNTYIMEF 362 (366)
Q Consensus 351 ~~~~~~~~vie~ 362 (366)
....+...-+.+
T Consensus 217 ~~~~~~~k~~~~ 228 (241)
T 3gdh_A 217 NFLNNKLKTITA 228 (241)
T ss_dssp EEETTEEEEEEE
T ss_pred hhhcCccceEEE
Confidence 555444443333
No 208
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.87 E-value=1e-09 Score=100.27 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=73.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC--CC-CC-CCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV--SV-PK-GDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~-~~-~D~i~ 264 (366)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ +. +. .|+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999998878889999998 778776653 3689999999865 22 22 39999
Q ss_pred eccccccCChH--HHHHHHHHHHHhCCCCcEEEEEc
Q 017777 265 IKWICHDWSDE--HCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 265 ~~~~lh~~~~~--~~~~~L~~~~~~L~pgG~lli~e 298 (366)
+....+..+.. ....++++++++|+|||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 86544332221 12478999999999999999865
No 209
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.87 E-value=9.2e-10 Score=101.74 Aligned_cols=98 Identities=19% Similarity=0.168 Sum_probs=75.6
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC---CCCC--CCEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV---SVPK--GDAI 263 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~~~--~D~i 263 (366)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ ..+. .|+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999878889999998 888776653 2589999999765 2332 3999
Q ss_pred EeccccccCChHH--HHHHHHHHHHhCCCCcEEEEE
Q 017777 264 FIKWICHDWSDEH--CVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 264 ~~~~~lh~~~~~~--~~~~L~~~~~~L~pgG~lli~ 297 (366)
++....+..+.+. ...+++.++++|+|||.|++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9854422111111 358999999999999999986
No 210
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.86 E-value=9.8e-10 Score=100.91 Aligned_cols=99 Identities=21% Similarity=0.185 Sum_probs=76.6
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----------CCCceEEEccCCC--CC-CC-CCEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----------FPGVEHVGGDMFV--SV-PK-GDAI 263 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~--~~-~~-~D~i 263 (366)
.++.+|||||||+|..+..+++..+..+++++|+ +.+++.+++ .++++++.+|..+ +. +. .|+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 3568999999999999999999877889999998 777766542 3589999999875 22 23 3999
Q ss_pred Eecccccc---CChHH--HHHHHHHHHHhCCCCcEEEEEc
Q 017777 264 FIKWICHD---WSDEH--CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 264 ~~~~~lh~---~~~~~--~~~~L~~~~~~L~pgG~lli~e 298 (366)
++....|. -+... ...++++++++|+|||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 99766554 11111 2588999999999999999964
No 211
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.86 E-value=9.9e-10 Score=98.95 Aligned_cols=98 Identities=21% Similarity=0.220 Sum_probs=74.9
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC--CC-CC-CCEEEe
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV--SV-PK-GDAIFI 265 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~-~~-~D~i~~ 265 (366)
++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .++++++.+|..+ +. +. .|+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 568999999999999999998767789999998 888776543 2689999999875 22 23 399998
Q ss_pred ccccccCChHH--HHHHHHHHHHhCCCCcEEEEEc
Q 017777 266 KWICHDWSDEH--CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 266 ~~~lh~~~~~~--~~~~L~~~~~~L~pgG~lli~e 298 (366)
....+..+... ...+++.++++|+|||.+++..
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 65443322111 1478999999999999998863
No 212
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.85 E-value=4.2e-09 Score=91.78 Aligned_cols=93 Identities=20% Similarity=0.188 Sum_probs=73.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCC-----------CCCceEEEccCCCCC-CC--CCE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPA-----------FPGVEHVGGDMFVSV-PK--GDA 262 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~-~~--~D~ 262 (366)
..+..+|||||||+|..+..+++.. +..+++++|+ +.+++.+++ ..+++++.+|..... +. .|+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3467899999999999999999885 6679999998 777776643 247999999987632 22 399
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
|++...++++. +++.+.|+|||++++...
T Consensus 155 i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred EEECCchHHHH--------HHHHHhcCCCcEEEEEEe
Confidence 99998887653 567899999999999754
No 213
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.85 E-value=1.8e-09 Score=97.57 Aligned_cols=98 Identities=19% Similarity=0.193 Sum_probs=73.0
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC----------------CCCCceEEEccCCCC--CCC-
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP----------------AFPGVEHVGGDMFVS--VPK- 259 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------------~~~~v~~~~~D~~~~--~~~- 259 (366)
..+.+|||||||+|.++..+++. +..+++++|+ +.+++.++ ..++++++.+|..+. .+.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 35689999999999999999988 8789999998 77776543 235789999997641 133
Q ss_pred CCEEEeccccccCChHH--HHHHHHHHHHhCCCCcEEEEEc
Q 017777 260 GDAIFIKWICHDWSDEH--CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~--~~~~L~~~~~~L~pgG~lli~e 298 (366)
.|+|++....+..+... ...++++++++|+|||.+++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 39999865543222222 2578999999999999998863
No 214
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.84 E-value=1.3e-09 Score=100.39 Aligned_cols=99 Identities=20% Similarity=0.127 Sum_probs=74.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCCC---CCC-CCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFVS---VPK-GDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~---~~~-~D~i~ 264 (366)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. .+. .|+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999998778889999998 777776542 25799999998652 223 39999
Q ss_pred eccccccCChHHH--HHHHHHHHHhCCCCcEEEEEc
Q 017777 265 IKWICHDWSDEHC--VKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 265 ~~~~lh~~~~~~~--~~~L~~~~~~L~pgG~lli~e 298 (366)
+...-+..+.... ..++++++++|+|||.+++..
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8643221112211 588999999999999999863
No 215
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.84 E-value=1.1e-09 Score=95.65 Aligned_cols=97 Identities=11% Similarity=0.161 Sum_probs=76.2
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC---C------CCCC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS---V------PKGD 261 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~------~~~D 261 (366)
.+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|..+. . ...|
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 4568999999999999999999887 789999998 7777766532 5799999997651 1 2239
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
+|++... ......+++++.+.|+|||.+++.+...
T Consensus 148 ~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 148 VAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 9988543 2334688999999999999999977544
No 216
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.84 E-value=1.1e-09 Score=100.33 Aligned_cols=99 Identities=20% Similarity=0.180 Sum_probs=71.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC--CC-CC-CCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV--SV-PK-GDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~-~~-~D~i~ 264 (366)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ +. +. .|+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 3568999999999999999998878889999998 777776542 2578999999865 22 22 39999
Q ss_pred eccccccCChHHH--HHHHHHHHHhCCCCcEEEEEc
Q 017777 265 IKWICHDWSDEHC--VKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 265 ~~~~lh~~~~~~~--~~~L~~~~~~L~pgG~lli~e 298 (366)
+...-+.-++... ..+++.++++|+|||.+++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8554332222221 589999999999999999864
No 217
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=98.83 E-value=1.5e-09 Score=93.05 Aligned_cols=96 Identities=13% Similarity=0.061 Sum_probs=72.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC--CCCC--CCEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV--SVPK--GDAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~~~~--~D~i~~~~~l 269 (366)
+..+|||+|||+|.++..++.+.. .+++++|+ +.+++.++++ ++++++++|+.+ +.+. .|+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 357999999999999998877643 38999998 8888877642 479999999876 3332 3999998775
Q ss_pred ccCChHHHHHHHHHHHH--hCCCCcEEEEEccc
Q 017777 270 HDWSDEHCVKFLKNCYE--ALPVNGKVIVAESI 300 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~--~L~pgG~lli~e~~ 300 (366)
|. . ....+++.+.+ +|+|||++++....
T Consensus 133 ~~-~--~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 133 RR-G--LLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp ST-T--THHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CC-C--cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 52 2 23467788766 49999999886653
No 218
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.83 E-value=1.9e-09 Score=94.85 Aligned_cols=97 Identities=15% Similarity=0.197 Sum_probs=76.0
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--C-C------CC-C
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--S-V------PK-G 260 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~------~~-~ 260 (366)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.++++ ++++++.+|..+ + . +. .
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 3568999999999999999999987 789999998 7777766542 479999999765 2 1 22 3
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
|+|++... ......+++.+.+.|+|||.|++.+...
T Consensus 149 D~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 149 DFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred CEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 99987532 2345689999999999999998866543
No 219
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.81 E-value=3.3e-09 Score=99.14 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=69.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC-------CCCceEEEccCCC-CCCCC-CEEEecccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA-------FPGVEHVGGDMFV-SVPKG-DAIFIKWICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~~~~-D~i~~~~~lh~ 271 (366)
++.+|||||||+|.++...++. ...+++++|..++++.|++ .++|+++.+|+.+ +.|+. |+|++-..-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 3578999999999998866664 3347999997556555543 2679999999988 67765 99987433332
Q ss_pred CChH-HHHHHHHHHHHhCCCCcEEEE
Q 017777 272 WSDE-HCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 272 ~~~~-~~~~~L~~~~~~L~pgG~lli 296 (366)
+..+ ....++....+.|+|||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 2222 355788888999999998764
No 220
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.81 E-value=1.3e-09 Score=95.62 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=75.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC---C--C----CCCCE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV---S--V----PKGDA 262 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~--~----~~~D~ 262 (366)
+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|..+ . . ...|+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 467999999999999999999987 789999998 7777766542 469999999754 1 1 22399
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
|++... ......+++++.++|+|||+|++.+...
T Consensus 152 V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 152 IFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred EEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 987644 2345688999999999999999977654
No 221
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.80 E-value=5.7e-09 Score=89.12 Aligned_cols=88 Identities=20% Similarity=0.179 Sum_probs=66.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCCCCCC-CCEEEeccccccCChH
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFVSVPK-GDAIFIKWICHDWSDE 275 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~~~-~D~i~~~~~lh~~~~~ 275 (366)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. .+++++++|+.+ .+. .|+|+++..+|++++.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCc
Confidence 345689999999999999999886 4457999998 8888877653 389999999876 333 3999999999998765
Q ss_pred HHHHHHHHHHHhC
Q 017777 276 HCVKFLKNCYEAL 288 (366)
Q Consensus 276 ~~~~~L~~~~~~L 288 (366)
....+++++.+.+
T Consensus 127 ~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 127 SDRAFIDKAFETS 139 (200)
T ss_dssp -CHHHHHHHHHHE
T ss_pred hhHHHHHHHHHhc
Confidence 4457899999998
No 222
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.80 E-value=2.7e-09 Score=97.08 Aligned_cols=97 Identities=25% Similarity=0.272 Sum_probs=71.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC--CC-CC-CCEEEe
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV--SV-PK-GDAIFI 265 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~-~~-~D~i~~ 265 (366)
.+.+|||||||+|..+..+++..+..+++++|+ +.+++.+++ .++++++.+|..+ +. +. .|+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 458999999999999999998877889999998 777766543 2689999999765 22 22 399997
Q ss_pred ccccccCChH---HHHHHHHHHHHhCCCCcEEEEE
Q 017777 266 KWICHDWSDE---HCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 266 ~~~lh~~~~~---~~~~~L~~~~~~L~pgG~lli~ 297 (366)
...-+..... ....++++++++|+|||.+++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 5332211111 1158899999999999999986
No 223
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.79 E-value=2.1e-09 Score=96.61 Aligned_cols=97 Identities=18% Similarity=0.127 Sum_probs=78.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCC-CCCC-CEEEecccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVS-VPKG-DAIFIKWIC 269 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~-~~~~-D~i~~~~~l 269 (366)
+.+..+|||+|||+|.++..+++..+..+++++|+ +.+++.++++ .++.++.+|+.+. .+.. |+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999988889999998 8888777542 5788999998774 3223 999886543
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
....+++.+.+.|+|||.+++.+...
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 23467999999999999999887654
No 224
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.79 E-value=8.1e-09 Score=93.44 Aligned_cols=102 Identities=18% Similarity=0.252 Sum_probs=74.1
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~ 259 (366)
...+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +.+.
T Consensus 17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 445666665 6677899999999999999999975 47888887 7777655431 479999999987 6666
Q ss_pred CCEEEeccccccCChHHHHHHHH--------------HH--HHhCCCCcEE
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLK--------------NC--YEALPVNGKV 294 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~--------------~~--~~~L~pgG~l 294 (366)
.|+|+++.. ++|..+....+|. ++ +.+++|||++
T Consensus 94 fD~vv~nlp-y~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~ 143 (285)
T 1zq9_A 94 FDTCVANLP-YQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKL 143 (285)
T ss_dssp CSEEEEECC-GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTT
T ss_pred hcEEEEecC-cccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcc
Confidence 699888544 4444444445543 22 4689999965
No 225
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.76 E-value=9.1e-09 Score=91.85 Aligned_cols=89 Identities=15% Similarity=0.081 Sum_probs=72.4
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----------CCceEEEccCCCCCCCCCEEEeccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----------PGVEHVGGDMFVSVPKGDAIFIKWI 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~~~~~~D~i~~~~~ 268 (366)
.++.+|||||||+|..+..+++. + .+++++|+ +.+++.++++ ++++++.+|..+.....|+|++..
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~- 147 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQ- 147 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESS-
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECC-
Confidence 35689999999999999999988 7 89999998 8899888753 478999999876333349999852
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
+++. .+++.++++|+|||.+++.
T Consensus 148 ----~dp~--~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 148 ----EPDI--HRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp ----CCCH--HHHHHHHTTEEEEEEEEEE
T ss_pred ----CChH--HHHHHHHHhcCCCcEEEEE
Confidence 3332 4899999999999999985
No 226
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.76 E-value=1.7e-08 Score=91.12 Aligned_cols=116 Identities=13% Similarity=0.087 Sum_probs=81.7
Q ss_pred CCCCCeEEEEeC------CccHHHHHHHHhCC-CCeEEEecchhHHhhCCCCCCceE-EEccCCC-CCCCC-CEEEeccc
Q 017777 199 FEGLNSVVDVGG------GIGATLNMIISKYP-SIKGINFDLPHVIQDAPAFPGVEH-VGGDMFV-SVPKG-DAIFIKWI 268 (366)
Q Consensus 199 ~~~~~~vLDvG~------G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~-~~~D~~~-~~~~~-D~i~~~~~ 268 (366)
+.+..+|||+|| |+|. ..+++..| +.+++++|+.+. .+++++ +++|+.+ +++.. |+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------v~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------VSDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------BCSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------CCCCEEEEECccccCCccCcccEEEEcCC
Confidence 566789999999 5577 44566666 689999998333 247999 9999987 44443 99998643
Q ss_pred ccc-----CC----hHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 269 CHD-----WS----DEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 269 lh~-----~~----~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
.+. .+ .+....+|+.++++|||||++++...... ...++.++
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-----------------------------~~~~l~~~ 183 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------------------------WNADLYKL 183 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------------------------CCHHHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------------------------CHHHHHHH
Confidence 221 00 12345789999999999999998643110 12367788
Q ss_pred HHHcCCceeEEE
Q 017777 340 AKAAGFQGFQVV 351 (366)
Q Consensus 340 l~~aGf~~~~~~ 351 (366)
+++.||..+++.
T Consensus 184 l~~~GF~~v~~~ 195 (290)
T 2xyq_A 184 MGHFSWWTAFVT 195 (290)
T ss_dssp HTTEEEEEEEEE
T ss_pred HHHcCCcEEEEE
Confidence 888999877765
No 227
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.74 E-value=2e-09 Score=106.95 Aligned_cols=102 Identities=17% Similarity=0.092 Sum_probs=78.2
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC---CCC--CCCEEEecc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV---SVP--KGDAIFIKW 267 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~---~~~--~~D~i~~~~ 267 (366)
.++.+|||||||.|.++..|++. +.+++|+|. +.+++.|+.+ .+++|.++++.+ ..+ ..|+|++..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 35689999999999999999985 678999998 8888776532 358999998865 233 249999999
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
+|||.++++....+.++.+.|+++|..++...+..+
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e 178 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKE 178 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEecccc
Confidence 999998876555566677777777777766654433
No 228
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.74 E-value=3.4e-08 Score=92.82 Aligned_cols=122 Identities=15% Similarity=0.042 Sum_probs=90.3
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC--CCEEEecc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK--GDAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~--~D~i~~~~ 267 (366)
+.+..+|||+|||+|.++..++...+..+++++|+ +.+++.++++ ++++++++|+.+ +.+. .|+|+++.
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 56778999999999999999999887678999998 8888777643 479999999987 5543 39999976
Q ss_pred ccccCC-----hHH-HHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHH
Q 017777 268 ICHDWS-----DEH-CVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAK 341 (366)
Q Consensus 268 ~lh~~~-----~~~-~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 341 (366)
.++... .++ ...+++.++++| ||+++++.. +.+.+.+.+.
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------------------------------~~~~~~~~~~ 340 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT--------------------------------EKKAIEEAIA 340 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES--------------------------------CHHHHHHHHH
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC--------------------------------CHHHHHHHHH
Confidence 544311 111 257889999998 555555421 2455677889
Q ss_pred HcCCceeEEEECC
Q 017777 342 AAGFQGFQVVSSA 354 (366)
Q Consensus 342 ~aGf~~~~~~~~~ 354 (366)
+.||+..+...+.
T Consensus 341 ~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 341 ENGFEIIHHRVIG 353 (373)
T ss_dssp HTTEEEEEEEEEE
T ss_pred HcCCEEEEEEEEE
Confidence 9999988876663
No 229
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.73 E-value=6e-08 Score=83.08 Aligned_cols=88 Identities=14% Similarity=0.040 Sum_probs=68.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----C-CceEEEccCCCCCCCCCEEEeccccccCC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----P-GVEHVGGDMFVSVPKGDAIFIKWICHDWS 273 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-~v~~~~~D~~~~~~~~D~i~~~~~lh~~~ 273 (366)
.+..+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++. . +++++.+|+.+.....|+|++...+|.+.
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 4568999999999999999988733 37999998 7777766542 2 78999999876212349999998888876
Q ss_pred hHHHHHHHHHHHHhC
Q 017777 274 DEHCVKFLKNCYEAL 288 (366)
Q Consensus 274 ~~~~~~~L~~~~~~L 288 (366)
......+|+++.+.+
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 544467899999998
No 230
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.72 E-value=2.7e-08 Score=95.83 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=79.1
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCC------CCCceEEEccCCC-C--CC-C-CCEEEe
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV-S--VP-K-GDAIFI 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~--~~-~-~D~i~~ 265 (366)
..+..+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..+++++.+|..+ + ++ . .|+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 566789999999999999999999877 79999997 666665543 2579999999876 3 44 3 399986
Q ss_pred ------ccccccCChHH--------------HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 266 ------KWICHDWSDEH--------------CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 266 ------~~~lh~~~~~~--------------~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
..+++..++.. ...+|+++.+.|||||+|++.+...
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 34555544321 1578999999999999999987644
No 231
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.71 E-value=1.9e-08 Score=88.82 Aligned_cols=103 Identities=13% Similarity=0.197 Sum_probs=72.0
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCC-CC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPK-GD 261 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~-~D 261 (366)
...+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .+
T Consensus 19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 455666665 5677899999999999999999986 67899997 777766543 3689999999987 6664 35
Q ss_pred EEEeccccccCChHHHHHHH--------------HHHHHhCCCCcEE
Q 017777 262 AIFIKWICHDWSDEHCVKFL--------------KNCYEALPVNGKV 294 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L--------------~~~~~~L~pgG~l 294 (366)
..++.+.-++++.+-...++ ..+.+.++|+|++
T Consensus 96 ~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l 142 (244)
T 1qam_A 96 YKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSL 142 (244)
T ss_dssp CEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHH
T ss_pred eEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcch
Confidence 45555555555444333333 2366667776643
No 232
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.70 E-value=3.4e-08 Score=94.25 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=78.0
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCC-CC-CEEEe
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVP-KG-DAIFI 265 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~-~~-D~i~~ 265 (366)
..+++.+. .....+|||+|||+|.++..+++++ +..+++++|+ +.+++.+ .+++++++|+++..+ .. |+|++
T Consensus 29 ~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 29 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence 34444444 3345699999999999999999887 6789999998 7777666 689999999987333 33 99999
Q ss_pred cccccc----------CChHHH-----------------HHHHHHHHHhCCCCcEEEEEcc
Q 017777 266 KWICHD----------WSDEHC-----------------VKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 266 ~~~lh~----------~~~~~~-----------------~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+--+.. ++++.. ..+++++.+.|+|||+++++.+
T Consensus 105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 633221 222221 2679999999999999988754
No 233
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.69 E-value=1.3e-08 Score=94.77 Aligned_cols=100 Identities=13% Similarity=0.133 Sum_probs=78.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCC-----CeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCC-C-CCEEEec
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPS-----IKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVP-K-GDAIFIK 266 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~-~-~D~i~~~ 266 (366)
....+|||+|||+|.++..+++..+. .+++++|+ +.+++.++.. .++.+.++|.+.+.+ . .|+|+++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 35679999999999999999988764 68899998 7777766542 368999999987543 3 3999999
Q ss_pred cccccCChHHH----------------HHHHHHHHHhCCCCcEEEEEcc
Q 017777 267 WICHDWSDEHC----------------VKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 267 ~~lh~~~~~~~----------------~~~L~~~~~~L~pgG~lli~e~ 299 (366)
..+++++.++. ..+++++.+.|+|||+++++.+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 88776654432 2689999999999999988764
No 234
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.67 E-value=5.5e-09 Score=92.42 Aligned_cols=108 Identities=13% Similarity=0.174 Sum_probs=78.7
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----CCceEEEccCCC-CCCC-CC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----PGVEHVGGDMFV-SVPK-GD 261 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~-~D 261 (366)
...+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +++. ..
T Consensus 18 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 94 (245)
T 1yub_A 18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence 445666665 6677899999999999999999975 68999998 7788777654 578999999987 6553 33
Q ss_pred EEEeccccccCChHHHHHHH--------------HHHHHhCCCCcEEEEEcc
Q 017777 262 AIFIKWICHDWSDEHCVKFL--------------KNCYEALPVNGKVIVAES 299 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L--------------~~~~~~L~pgG~lli~e~ 299 (366)
..++++.-++.+.+....++ +.+.++|+|||++.++..
T Consensus 95 f~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 95 YKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred cEEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 34455554554444333433 668999999998777543
No 235
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.67 E-value=2.5e-08 Score=90.86 Aligned_cols=100 Identities=21% Similarity=0.273 Sum_probs=70.6
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC-CCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV-SVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~~~~ 260 (366)
...+++.++ ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+..
T Consensus 31 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 31 LDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 445666565 667789999999999999999886 458999998 777766543 2589999999987 55556
Q ss_pred CEEEeccccccCChHHHHHHH---------------HHHHHhCCCCc
Q 017777 261 DAIFIKWICHDWSDEHCVKFL---------------KNCYEALPVNG 292 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L---------------~~~~~~L~pgG 292 (366)
|+|+++. .+++..+....+| ..+.++++|+|
T Consensus 108 D~Vv~n~-py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 108 DVCTANI-PYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp SEEEEEC-CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred CEEEEcC-CcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 9998754 4455666555666 34678888877
No 236
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.67 E-value=1e-08 Score=92.25 Aligned_cols=103 Identities=10% Similarity=0.061 Sum_probs=75.1
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CC-----CC-CCEE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SV-----PK-GDAI 263 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~-----~~-~D~i 263 (366)
..+..+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ .+++++.+|..+ +. +. .|+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456789999999999999999998876 78999998 7776665432 479999999876 22 32 3999
Q ss_pred Eec------ccccc---CCh-------HHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 264 FIK------WICHD---WSD-------EHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 264 ~~~------~~lh~---~~~-------~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
++. .+++. |+. .....+|+++.+.|||||+|++.....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 886 23321 111 112588999999999999999976543
No 237
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.65 E-value=6.4e-08 Score=89.35 Aligned_cols=95 Identities=16% Similarity=0.050 Sum_probs=71.9
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------C--CceEEEccCCCCC------C-CCCEEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------P--GVEHVGGDMFVSV------P-KGDAIF 264 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~D~~~~~------~-~~D~i~ 264 (366)
+..+|||+|||+|.++..++... .+++++|+ +.+++.++++ . +++++++|+++.. . ..|+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 45799999999999999999853 48999998 8888777642 2 4999999987621 2 349999
Q ss_pred eccc----------cccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 265 IKWI----------CHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 265 ~~~~----------lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+..- ++. .+....+++++.++|+|||.+++...
T Consensus 231 ~dPP~~~~~~~~~~~~~--~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQL--FDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp ECCCSEEECTTCCEEEH--HHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred ECCccccCCchHHHHHH--HHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 8422 111 23456899999999999999877554
No 238
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.64 E-value=7.8e-07 Score=82.93 Aligned_cols=163 Identities=18% Similarity=0.176 Sum_probs=97.3
Q ss_pred hHHHHHHhccCCC-----CCCeEEEEeCCccHHHHHH--------HHhC-------CCCeEEEecchhH--------Hhh
Q 017777 188 TMKKILENYKGFE-----GLNSVVDVGGGIGATLNMI--------ISKY-------PSIKGINFDLPHV--------IQD 239 (366)
Q Consensus 188 ~~~~~~~~~~~~~-----~~~~vLDvG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~~--------~~~ 239 (366)
.+++.+..+. .. +..+|+|+|||+|..+..+ .+++ |.++++.-|+|.- +..
T Consensus 35 ~~~~ai~~l~-~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~ 113 (374)
T 3b5i_A 35 LLEETLENVH-LNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPP 113 (374)
T ss_dssp HHHHHHHTSC-CCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCC
T ss_pred HHHHHHHHhh-ccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhh
Confidence 4444455554 22 2578999999999888776 2232 7778888887422 111
Q ss_pred CCC-----------CCC---ceEEEccCCC-CCCCC--CEEEeccccccCCh----------------------------
Q 017777 240 APA-----------FPG---VEHVGGDMFV-SVPKG--DAIFIKWICHDWSD---------------------------- 274 (366)
Q Consensus 240 a~~-----------~~~---v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~---------------------------- 274 (366)
.++ ..+ +.-+++.+.. .+|.. |+++++.+||++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~ 193 (374)
T 3b5i_A 114 LVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTT 193 (374)
T ss_dssp BCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHH
T ss_pred hhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHH
Confidence 111 001 2235566666 67765 99999999999862
Q ss_pred --------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhh--hh--hhhcchhhHhhCC-------------CCc
Q 017777 275 --------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLAS--KV--VIHVDCIMLAHNP-------------GGK 329 (366)
Q Consensus 275 --------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~-------------~~~ 329 (366)
.+...+|+..++.|+|||++++.-...++........ .. ......+...... --.
T Consensus 194 ~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y 273 (374)
T 3b5i_A 194 TAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVY 273 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCcccc
Confidence 1345679999999999999999877554421111000 00 0000001100000 012
Q ss_pred cCCHHHHHHHHH-HcCCceeEEE
Q 017777 330 ERTEQEFRALAK-AAGFQGFQVV 351 (366)
Q Consensus 330 ~~t~~e~~~ll~-~aGf~~~~~~ 351 (366)
.++.+|++++++ +.||++..+.
T Consensus 274 ~ps~~E~~~~l~~~~~F~I~~le 296 (374)
T 3b5i_A 274 APSLQDFKEVVDANGSFAIDKLV 296 (374)
T ss_dssp CCCHHHHHHHHHHHCSEEEEEEE
T ss_pred CCCHHHHHHHHHhcCCcEEEEEE
Confidence 368999999998 5899987654
No 239
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.59 E-value=6.9e-08 Score=86.51 Aligned_cols=120 Identities=14% Similarity=0.084 Sum_probs=87.0
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC--CCEEEeccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK--GDAIFIKWI 268 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~~ 268 (366)
..++.+|||+|||+|.++..++.. +..+++++|+ |.+++.++++ ++++++.+|..+-.++ .|.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 346789999999999999998876 4568999998 7777766542 6799999998873333 398886532
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCcee
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGF 348 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 348 (366)
. ....+|..+.++|+|||.|.+.+....+. ......+.++++.++.|+++.
T Consensus 202 ~------~~~~~l~~a~~~lk~gG~ih~~~~~~e~~-----------------------~~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 202 V------RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp S------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred C------cHHHHHHHHHHHcCCCCEEEEEeeecccc-----------------------cchhHHHHHHHHHHHcCCcEE
Confidence 2 12367888899999999998877654221 001235667788899999753
No 240
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.58 E-value=5.9e-08 Score=92.95 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=77.8
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-C--CCC--CCEEEe--
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-S--VPK--GDAIFI-- 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~--~~~--~D~i~~-- 265 (366)
..+..+|||+|||+|..+..+++..++.+++++|+ +..++.+++. .+++++++|..+ + ++. .|+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 55678999999999999999999998889999997 6666555432 358899999876 2 332 399986
Q ss_pred ----ccccccCChH-------H-------HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 266 ----KWICHDWSDE-------H-------CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 266 ----~~~lh~~~~~-------~-------~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
..+++..++. + ...+|+++.+.|||||+|++.+...
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 2445544432 1 1488999999999999999987543
No 241
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.49 E-value=3.2e-07 Score=88.77 Aligned_cols=101 Identities=21% Similarity=0.282 Sum_probs=75.9
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-C--CCCC-CEEEec--
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-S--VPKG-DAIFIK-- 266 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~~-D~i~~~-- 266 (366)
...+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .++.++.+|..+ + .+.. |+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 478999998 7777665532 578999999876 3 3333 999872
Q ss_pred ----cccc-------cCChHH-------HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 267 ----WICH-------DWSDEH-------CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 267 ----~~lh-------~~~~~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.+++ +|+.++ ..++|+.+.++|||||+|++.....
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 2332 233222 2478999999999999999876543
No 242
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.49 E-value=6.8e-08 Score=92.72 Aligned_cols=101 Identities=8% Similarity=0.086 Sum_probs=74.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC------CCceEEEccCCC-C--CCC-CCEEEe-
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-S--VPK-GDAIFI- 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~-~D~i~~- 265 (366)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ . +.++.+|..+ + .+. .|+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 556789999999999999999998865 68999998 7777766542 4 8889988765 2 233 399985
Q ss_pred -----ccccc-------cCChHHH-------HHHHHHHHHhCCCCcEEEEEccc
Q 017777 266 -----KWICH-------DWSDEHC-------VKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 266 -----~~~lh-------~~~~~~~-------~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
..+++ .|+.++. ..+|+.+.+.|||||+|+...-.
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 12222 2222222 67999999999999999986543
No 243
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.47 E-value=1.9e-06 Score=79.77 Aligned_cols=151 Identities=16% Similarity=0.115 Sum_probs=89.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHh----------------CCCCeEEEecchh-HH-hhCCCCC------CceE---EEcc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISK----------------YPSIKGINFDLPH-VI-QDAPAFP------GVEH---VGGD 252 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~----------------~p~~~~~~~D~~~-~~-~~a~~~~------~v~~---~~~D 252 (366)
++..+|+|+||++|..+..+... .|.+.++.-|+|. .. ...+..+ +..| +++.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34578999999999765543332 4666777778732 11 1112111 2233 4567
Q ss_pred CCC-CCCCC--CEEEeccccccCCh-------------------------------HHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 253 MFV-SVPKG--DAIFIKWICHDWSD-------------------------------EHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 253 ~~~-~~~~~--D~i~~~~~lh~~~~-------------------------------~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
+.. .+|.. |+++++.+||++++ .+...+|+..++.|+|||++++.-
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 766 67765 99999999998754 133466999999999999999977
Q ss_pred cccCCCCCCch-----hh-hhhhhcchhhHhh---------CCCCccCCHHHHHHHHHHcCC-ceeEE
Q 017777 299 SILPVTPDTSL-----AS-KVVIHVDCIMLAH---------NPGGKERTEQEFRALAKAAGF-QGFQV 350 (366)
Q Consensus 299 ~~~~~~~~~~~-----~~-~~~~~~~~~~~~~---------~~~~~~~t~~e~~~ll~~aGf-~~~~~ 350 (366)
...++...... .. ....+.++..... ..--..++.+|++++++++|. ++...
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 65544311000 00 0111111111000 001124589999999999965 65543
No 244
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.37 E-value=3.6e-06 Score=78.53 Aligned_cols=150 Identities=16% Similarity=0.136 Sum_probs=90.3
Q ss_pred CCeEEEEeCCccHHHHHHHHh-----------------CCCCeEEEecch-----------h-HHhhC----CCCCCceE
Q 017777 202 LNSVVDVGGGIGATLNMIISK-----------------YPSIKGINFDLP-----------H-VIQDA----PAFPGVEH 248 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~-~~~~a----~~~~~v~~ 248 (366)
..+|+|+||++|..+..+... .|.+.++.-|+| + ..+.. ....+..|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 688999999999988877666 366777777876 1 11111 11123344
Q ss_pred E---EccCCC-CCCCC--CEEEeccccccCChHH-------------------------H------------HHHHHHHH
Q 017777 249 V---GGDMFV-SVPKG--DAIFIKWICHDWSDEH-------------------------C------------VKFLKNCY 285 (366)
Q Consensus 249 ~---~~D~~~-~~~~~--D~i~~~~~lh~~~~~~-------------------------~------------~~~L~~~~ 285 (366)
+ ++.+.. .+|.. |+++++.+||++++.. . ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 456665 67765 9999999999875321 1 23378889
Q ss_pred HhCCCCcEEEEEccccCCC--CCCchhhhhhhhcchhhHh---------hCCCCccCCHHHHHHHHHHcC-CceeEEE
Q 017777 286 EALPVNGKVIVAESILPVT--PDTSLASKVVIHVDCIMLA---------HNPGGKERTEQEFRALAKAAG-FQGFQVV 351 (366)
Q Consensus 286 ~~L~pgG~lli~e~~~~~~--~~~~~~~~~~~~~~~~~~~---------~~~~~~~~t~~e~~~ll~~aG-f~~~~~~ 351 (366)
+.|+|||++++.-...++. ...........+.++.... ...--..++.+|++++++++| |++....
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 9999999999987755442 1110000011111111100 000122368999999999985 7776543
No 245
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.37 E-value=1.1e-06 Score=77.78 Aligned_cols=85 Identities=21% Similarity=0.288 Sum_probs=64.7
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--CCceEEEccCCC-CCCCC--CE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--PGVEHVGGDMFV-SVPKG--DA 262 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~~~~--D~ 262 (366)
...+++.++ .....+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++++|+.+ ++++. +.
T Consensus 20 ~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 20 LKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 445666665 667789999999999999999986 4568999998 7888777654 578999999987 66542 56
Q ss_pred EEeccccccCChH
Q 017777 263 IFIKWICHDWSDE 275 (366)
Q Consensus 263 i~~~~~lh~~~~~ 275 (366)
+++.+.-++.+.+
T Consensus 98 ~vv~NlPy~i~~~ 110 (249)
T 3ftd_A 98 KVVGNLPYNVASL 110 (249)
T ss_dssp EEEEECCTTTHHH
T ss_pred EEEEECchhccHH
Confidence 6667776765544
No 246
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.37 E-value=2.9e-07 Score=88.19 Aligned_cols=103 Identities=12% Similarity=0.132 Sum_probs=74.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC------CCceEEEccCCC-C--CCC-CCEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-S--VPK-GDAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~-~D~i~~~ 266 (366)
.....+|||+|||+|..+..+++..++ .+++++|+ +..++.++++ .++.++.+|..+ + .+. .|+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 556789999999999999999988654 68999998 7777665532 568888888765 2 233 3999873
Q ss_pred c------cccc-------CChHH-------HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 267 W------ICHD-------WSDEH-------CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 267 ~------~lh~-------~~~~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
- ++.. |+.++ ...+|+.+.+.|||||+|+...-..
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 2 2222 11111 1378999999999999999876543
No 247
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.36 E-value=5.7e-07 Score=84.85 Aligned_cols=111 Identities=10% Similarity=-0.061 Sum_probs=79.1
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC--------------------------------------CeEE
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS--------------------------------------IKGI 229 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 229 (366)
.+..++.... +.+...|||.+||+|.++..++....+ .+++
T Consensus 189 lAa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 189 MAAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 3445665555 788899999999999999888765443 5699
Q ss_pred Eecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC-CCEEEecccccc-CC-hHHHHHHHHHHHHhCCC--CcEEE
Q 017777 230 NFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK-GDAIFIKWICHD-WS-DEHCVKFLKNCYEALPV--NGKVI 295 (366)
Q Consensus 230 ~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~-~D~i~~~~~lh~-~~-~~~~~~~L~~~~~~L~p--gG~ll 295 (366)
++|+ +.+++.++++ .+++++++|+.+ +.+. .|+|+++--++. +. .++...+.+.+.+.|++ ||.++
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 9998 8888777642 469999999987 4443 399999844432 11 23445666666666665 88888
Q ss_pred EEcc
Q 017777 296 VAES 299 (366)
Q Consensus 296 i~e~ 299 (366)
++..
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8754
No 248
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.36 E-value=2e-07 Score=89.68 Aligned_cols=110 Identities=16% Similarity=0.093 Sum_probs=79.1
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-------------CCCeEEEecc-hhHHhhCCCC------C--Cc
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-------------PSIKGINFDL-PHVIQDAPAF------P--GV 246 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~~------~--~v 246 (366)
...+++.+. .....+|||.|||+|.++..+.+.. +..+++++|+ +.+++.++.. . ++
T Consensus 160 ~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~ 238 (445)
T 2okc_A 160 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 238 (445)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCC
Confidence 334444444 4456799999999999999888764 4467999998 7777665431 2 68
Q ss_pred eEEEccCCC-CCCC-CCEEEeccccccCChH---------------HHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 247 EHVGGDMFV-SVPK-GDAIFIKWICHDWSDE---------------HCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 247 ~~~~~D~~~-~~~~-~D~i~~~~~lh~~~~~---------------~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+.++|.+. +... .|+|+++-.++..... ....+++.+.+.|+|||++.++-+
T Consensus 239 ~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 239 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 899999887 3333 3999998666542211 124789999999999999988754
No 249
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.36 E-value=1.6e-07 Score=88.57 Aligned_cols=97 Identities=11% Similarity=0.007 Sum_probs=73.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCC------CC-CCEEEec
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSV------PK-GDAIFIK 266 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~------~~-~D~i~~~ 266 (366)
+..+|||+|||+|.++..++.. ..+++++|+ +.+++.++++ .+++++++|+++.. +. .|+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999987 557999998 7787776542 45899999987621 22 3999984
Q ss_pred cccccCCh-------HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 267 WICHDWSD-------EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 267 ~~lh~~~~-------~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
--.+..+. .....+++.+.+.|+|||.+++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 32221111 3456789999999999999998764
No 250
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.33 E-value=1.6e-06 Score=81.39 Aligned_cols=111 Identities=11% Similarity=-0.033 Sum_probs=81.6
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC--------------------------------------CeEE
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS--------------------------------------IKGI 229 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 229 (366)
.+..++.... |.+...|||.+||+|.++.+.+....+ .+++
T Consensus 182 LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 182 MAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 4445565555 788899999999999999988765443 5699
Q ss_pred Eecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC-CCEEEecccccc-CC-hHHHHHHHHHHHHhCCC--CcEEE
Q 017777 230 NFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK-GDAIFIKWICHD-WS-DEHCVKFLKNCYEALPV--NGKVI 295 (366)
Q Consensus 230 ~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~-~D~i~~~~~lh~-~~-~~~~~~~L~~~~~~L~p--gG~ll 295 (366)
++|+ +.+++.++++ .+++++++|+.+ +.+. .|+|+++--++. +. .++...+.+.+.+.|++ ||++.
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 340 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQF 340 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 9998 8888777642 469999999987 4443 499999755432 22 34566778888888876 88888
Q ss_pred EEcc
Q 017777 296 VAES 299 (366)
Q Consensus 296 i~e~ 299 (366)
|+..
T Consensus 341 iit~ 344 (384)
T 3ldg_A 341 ILTN 344 (384)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8754
No 251
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.33 E-value=2e-07 Score=88.37 Aligned_cols=98 Identities=13% Similarity=0.062 Sum_probs=73.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------C-CceEEEccCCCCC------CC-CCEEEe
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------P-GVEHVGGDMFVSV------PK-GDAIFI 265 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~~~------~~-~D~i~~ 265 (366)
+..+|||+|||+|.++..++.. +..+++++|+ +.+++.++++ . +++++++|+++.. +. .|+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5689999999999999999986 3448999998 7777766542 2 7899999987621 22 399998
Q ss_pred ccccccCCh-------HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 266 KWICHDWSD-------EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 266 ~~~lh~~~~-------~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.-..+..+. .....++.++.+.|+|||.|++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 533222111 3456889999999999999988764
No 252
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=98.33 E-value=1.7e-06 Score=79.61 Aligned_cols=143 Identities=10% Similarity=0.098 Sum_probs=102.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC---------------------------CCCceEEEccC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA---------------------------FPGVEHVGGDM 253 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~~v~~~~~D~ 253 (366)
+...||.+|||......++...+++++++-+|.|++++.-++ .++.+++..|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 468999999999999999999888999999999888754321 15788999999
Q ss_pred CC-CC--------C--CC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhh
Q 017777 254 FV-SV--------P--KG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIM 321 (366)
Q Consensus 254 ~~-~~--------~--~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~ 321 (366)
.+ +. + .. .++++-.+|++++.++...+|+.+.+.+ |+|.+++.|.+.+..+....-... ..++..
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m--~~~l~~ 253 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIM--QSNLKE 253 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHH--HHHHHH
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHH--HHHhhc
Confidence 86 21 1 12 7888889999999999999999999988 788888899887632211110100 001111
Q ss_pred -Hhh-CCC-CccCCHHHHHHHHHHcCCc
Q 017777 322 -LAH-NPG-GKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 322 -~~~-~~~-~~~~t~~e~~~ll~~aGf~ 346 (366)
... ..+ ....+.++..+.|.++||.
T Consensus 254 ~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 254 SRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred ccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 100 011 2345889999999999997
No 253
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.33 E-value=9.5e-07 Score=79.87 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=61.3
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCC--C
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPK--G 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~--~ 260 (366)
...+++.+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++++|+.+ +++. .
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 456666665 667789999999999999999997 457888887 777766654 3789999999998 6665 4
Q ss_pred CEEEeccccc
Q 017777 261 DAIFIKWICH 270 (366)
Q Consensus 261 D~i~~~~~lh 270 (366)
|+|+.+..+|
T Consensus 116 D~Iv~NlPy~ 125 (295)
T 3gru_A 116 NKVVANLPYQ 125 (295)
T ss_dssp SEEEEECCGG
T ss_pred cEEEEeCccc
Confidence 9988664443
No 254
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.31 E-value=2.8e-07 Score=85.26 Aligned_cols=92 Identities=17% Similarity=0.147 Sum_probs=71.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCCCCEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPKGDAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~D~i~~~~~lh~ 271 (366)
.+..+|||+|||+|.++.. ++ ...+++++|+ +.+++.++++ ++++++.+|+++.....|+|++...-+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~~- 269 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPKF- 269 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTTT-
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcHh-
Confidence 4568999999999999998 66 5678999998 7787776542 479999999987333349999852211
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
...+++.+.+.|+|||.+++.+..
T Consensus 270 -----~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 270 -----AHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp -----GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred -----HHHHHHHHHHHcCCCCEEEEEEee
Confidence 237899999999999999997753
No 255
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.28 E-value=1.2e-06 Score=82.54 Aligned_cols=111 Identities=15% Similarity=0.014 Sum_probs=80.7
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC--------------------------------------CeEE
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS--------------------------------------IKGI 229 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 229 (366)
.+..++.... +.+..+|||.+||+|.++..++....+ .+++
T Consensus 183 lAa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 183 LAAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 3445565555 778899999999999999998776332 5799
Q ss_pred Eecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC-CCEEEecccccc-CC-hHHHHHHHHHHHHhCCC--CcEEE
Q 017777 230 NFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK-GDAIFIKWICHD-WS-DEHCVKFLKNCYEALPV--NGKVI 295 (366)
Q Consensus 230 ~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~-~D~i~~~~~lh~-~~-~~~~~~~L~~~~~~L~p--gG~ll 295 (366)
++|+ +.+++.++++ +++++.++|+.+ +.+. .|+|+++--+.. +. .++...+.+.+.+.|++ |+.+.
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 341 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYY 341 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 9998 8888877653 369999999987 4443 499999755532 22 23456777777777776 88888
Q ss_pred EEcc
Q 017777 296 VAES 299 (366)
Q Consensus 296 i~e~ 299 (366)
++..
T Consensus 342 iit~ 345 (385)
T 3ldu_A 342 LITS 345 (385)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8754
No 256
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.28 E-value=6.2e-07 Score=84.57 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=70.2
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCC---CCC-CCEEEeccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVS---VPK-GDAIFIKWICH 270 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~---~~~-~D~i~~~~~lh 270 (366)
++.+|||+|||+|.++..++.. +.+++++|+ +.+++.++++ -..++.++|+++. .+. .|+|++.-..+
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 4789999999999999999986 345999998 8888777653 1245778888762 222 49998853321
Q ss_pred cCCh-------HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 271 DWSD-------EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 271 ~~~~-------~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.-+. .....+++.+.+.|+|||+|++...
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~ 327 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC 327 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1111 2335789999999999999997664
No 257
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.28 E-value=1.6e-06 Score=77.42 Aligned_cols=90 Identities=14% Similarity=0.113 Sum_probs=64.4
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC---CCCceEEEccCCC-CCCC--C-
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA---FPGVEHVGGDMFV-SVPK--G- 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~D~~~-~~~~--~- 260 (366)
...+++.+. .... +|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++. .
T Consensus 36 ~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 36 LRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 345666665 5666 99999999999999999975 57888887 777766543 2589999999987 5553 2
Q ss_pred CEEEeccccccCChHHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKN 283 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~ 283 (366)
|. +..+.-++.+.+-..++|..
T Consensus 112 ~~-iv~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SL-LVANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EE-EEEEECSSCCHHHHHHHHHH
T ss_pred cE-EEecCcccccHHHHHHHhcC
Confidence 55 44556666676655555544
No 258
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.26 E-value=5.2e-07 Score=89.34 Aligned_cols=125 Identities=17% Similarity=0.135 Sum_probs=79.5
Q ss_pred hhhcccCchHHHHHHHHhhhcchhhHHHHHHhccC---CCCCCeEEEEeCCccHHHHHHHHh---C-CCCeEEEecchhH
Q 017777 164 FDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKG---FEGLNSVVDVGGGIGATLNMIISK---Y-PSIKGINFDLPHV 236 (366)
Q Consensus 164 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~---~~~~~~vLDvG~G~G~~~~~l~~~---~-p~~~~~~~D~~~~ 236 (366)
|+.+++|+-....|.+++.. .+.+..+. ..+...|||||||+|-+....+++ . -.++++.++-.++
T Consensus 324 YevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~ 396 (637)
T 4gqb_A 324 YEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN 396 (637)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH
T ss_pred hhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence 56677777666677766543 23333221 223468999999999984443333 2 2346788886444
Q ss_pred HhhCCC-------CCCceEEEccCCC-CCCCC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEE
Q 017777 237 IQDAPA-------FPGVEHVGGDMFV-SVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVI 295 (366)
Q Consensus 237 ~~~a~~-------~~~v~~~~~D~~~-~~~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~ll 295 (366)
...+++ .++|+++.+|+.+ ..|+. |+|++-..=+.+..|-...+|....+.|||||.++
T Consensus 397 A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 397 AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 444432 2689999999998 77776 99987432222222334467778889999999753
No 259
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.26 E-value=2.9e-06 Score=74.77 Aligned_cols=109 Identities=12% Similarity=0.050 Sum_probs=68.0
Q ss_pred hhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecch-hHHhhCCCC----CCceEEEccCCC-CCCC-
Q 017777 187 ITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLP-HVIQDAPAF----PGVEHVGGDMFV-SVPK- 259 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~----~~v~~~~~D~~~-~~~~- 259 (366)
+.+.++.+... +....+|||+|||+|.++..+++..+-..++++|+. ......... .++.++..++.. .++.
T Consensus 61 ~KL~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~ 139 (277)
T 3evf_A 61 AKLRWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPV 139 (277)
T ss_dssp HHHHHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCC
Confidence 44566666643 677789999999999999988876554455555542 111011111 144445554322 3432
Q ss_pred -CCEEEeccccc---cCChH-HHHHHHHHHHHhCCCC-cEEEE
Q 017777 260 -GDAIFIKWICH---DWSDE-HCVKFLKNCYEALPVN-GKVIV 296 (366)
Q Consensus 260 -~D~i~~~~~lh---~~~~~-~~~~~L~~~~~~L~pg-G~lli 296 (366)
.|+|++....+ ++-|. ....+|+.+.++|+|| |.+++
T Consensus 140 ~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 140 KCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 39999977665 11122 2235689999999999 99988
No 260
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.24 E-value=3.2e-07 Score=86.52 Aligned_cols=99 Identities=17% Similarity=0.082 Sum_probs=72.1
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------C--CceEEEccCCCCC------C-CCCEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------P--GVEHVGGDMFVSV------P-KGDAI 263 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~D~~~~~------~-~~D~i 263 (366)
.+..+|||+|||+|.++..++... ..+++++|+ +.+++.++++ . +++++++|+++.. + ..|+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 356799999999999999998853 237999998 8887776542 2 7999999987621 1 23999
Q ss_pred Eecccc-----ccCCh--HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 264 FIKWIC-----HDWSD--EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 264 ~~~~~l-----h~~~~--~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
++.... +...+ .....+++.+.+.|+|||.|++...
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 984322 12221 2345688999999999999988653
No 261
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.24 E-value=6.8e-07 Score=82.45 Aligned_cols=98 Identities=19% Similarity=0.183 Sum_probs=69.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------------CCceEEEccCCC--C-C---C
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------------PGVEHVGGDMFV--S-V---P 258 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~D~~~--~-~---~ 258 (366)
.++.+|||||||+|..+..+++..+ .+++.+|+ +.+++.++++ ++++++.+|.++ . . +
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~ 265 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 265 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccC
Confidence 3578999999999999999988765 68999998 8888776532 168999999876 2 1 2
Q ss_pred C-CCEEEecccc-c-cCChH--HHHHHHHHH----HHhCCCCcEEEEEc
Q 017777 259 K-GDAIFIKWIC-H-DWSDE--HCVKFLKNC----YEALPVNGKVIVAE 298 (366)
Q Consensus 259 ~-~D~i~~~~~l-h-~~~~~--~~~~~L~~~----~~~L~pgG~lli~e 298 (366)
. .|+|++-..- . ..... ....+++.+ +++|+|||.+++..
T Consensus 266 ~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs 314 (364)
T 2qfm_A 266 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 314 (364)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEc
Confidence 2 3999885422 1 00010 113555555 99999999998864
No 262
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.21 E-value=6.5e-07 Score=84.78 Aligned_cols=98 Identities=13% Similarity=-0.014 Sum_probs=72.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------C-CceEEEccCCCCC------C-CCCEEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------P-GVEHVGGDMFVSV------P-KGDAIF 264 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~-~v~~~~~D~~~~~------~-~~D~i~ 264 (366)
+..+|||+|||+|.++..++... ..+++++|+ +.+++.++++ . +++++.+|+++.. + ..|+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 46799999999999999999864 348999998 7777766542 2 7899999987621 2 239999
Q ss_pred eccccccCC-------hHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 265 IKWICHDWS-------DEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 265 ~~~~lh~~~-------~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+.-.....+ ......++.++.+.|+|||.+++...
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 853221110 13456889999999999999988653
No 263
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.18 E-value=2.2e-06 Score=75.76 Aligned_cols=90 Identities=10% Similarity=0.084 Sum_probs=62.0
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----CCceEEEccCCC-CCCC---
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----PGVEHVGGDMFV-SVPK--- 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~--- 259 (366)
...+++.+. .....+|||||||+|.++. +. +.+..+++++|+ +.+++.+++. ++++++.+|+.+ ++++
T Consensus 10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 455666665 6667899999999999999 64 444434899998 8888877653 479999999987 5431
Q ss_pred ---CCEEEeccccccCChHHHHHHH
Q 017777 260 ---GDAIFIKWICHDWSDEHCVKFL 281 (366)
Q Consensus 260 ---~D~i~~~~~lh~~~~~~~~~~L 281 (366)
.+.++..+.-++.+.+-..++|
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2455556666665544333444
No 264
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.17 E-value=7e-07 Score=80.21 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=60.7
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC--CeEEEecc-hhHHhhCCCC--CCceEEEccCCC-CCCC---
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS--IKGINFDL-PHVIQDAPAF--PGVEHVGGDMFV-SVPK--- 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~~~--- 259 (366)
...+++.+. .....+|||||||+|.++..|++..+. .+++++|+ +.+++.+++. .+++++++|+.+ ++++
T Consensus 31 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~~~~ 109 (279)
T 3uzu_A 31 IDAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGSIAR 109 (279)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGGGSC
T ss_pred HHHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhHhcc
Confidence 345666665 667789999999999999999998654 45888887 7787777653 689999999987 5442
Q ss_pred ----CCEEEeccccccCC
Q 017777 260 ----GDAIFIKWICHDWS 273 (366)
Q Consensus 260 ----~D~i~~~~~lh~~~ 273 (366)
....+..|.-++.+
T Consensus 110 ~~~~~~~~vv~NlPY~is 127 (279)
T 3uzu_A 110 PGDEPSLRIIGNLPYNIS 127 (279)
T ss_dssp SSSSCCEEEEEECCHHHH
T ss_pred cccCCceEEEEccCcccc
Confidence 12445555555433
No 265
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.16 E-value=1.1e-06 Score=88.95 Aligned_cols=98 Identities=11% Similarity=0.076 Sum_probs=72.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCC--CC-CC-CCEEEecc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFV--SV-PK-GDAIFIKW 267 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~--~~-~~-~D~i~~~~ 267 (366)
++.+|||+|||+|.++..++.... .+++++|+ +.+++.++++ .+++++++|+++ +. .. .|+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 467999999999999999888433 36999998 7888776542 379999999886 22 22 39999853
Q ss_pred ccc--------cCC-hHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 268 ICH--------DWS-DEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 268 ~lh--------~~~-~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
-.+ .+. ......+++.+.++|+|||.|++...
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 211 111 13456889999999999999997553
No 266
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.15 E-value=4e-06 Score=80.28 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=69.4
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC----
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP---- 258 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~---- 258 (366)
..+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.++++ .+++++.+|+.+..+
T Consensus 276 ~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 276 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 34455444 556789999999999999999986 568999998 7888776542 479999999987322
Q ss_pred ---CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 259 ---KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 259 ---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
..|+|++.--... ...+++.+.+ ++|++.+++.
T Consensus 353 ~~~~fD~Vv~dPPr~g-----~~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 353 AKNGFDKVLLDPARAG-----AAGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp GTTCCSEEEECCCTTC-----CHHHHHHHHH-HCCSEEEEEE
T ss_pred hcCCCCEEEECCCCcc-----HHHHHHHHHh-cCCCeEEEEE
Confidence 2399997433221 1244555544 6888877764
No 267
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.14 E-value=6.2e-06 Score=78.54 Aligned_cols=91 Identities=13% Similarity=0.007 Sum_probs=66.6
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC-CCCEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP-KGDAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~~D~i~~~~~lh~ 271 (366)
.+..+|||+|||+|.++..+++. ..+++++|+ +.+++.++++ . ++++.+|+.+..+ ..|+|++......
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 35679999999999999999885 458999998 8888777643 3 8999999987433 3499998543222
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.. ..+++.+. .|+|+|.+++..
T Consensus 366 ~~----~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 366 LH----PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp SC----HHHHHHHH-HHCCSEEEEEES
T ss_pred hH----HHHHHHHH-hcCCCcEEEEEC
Confidence 21 13455554 489999988853
No 268
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.13 E-value=2.2e-06 Score=84.92 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=76.6
Q ss_pred hhhcccCchHHHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-------------CCCeEEE
Q 017777 164 FDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-------------PSIKGIN 230 (366)
Q Consensus 164 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~ 230 (366)
|+.+.+|+-....|.+++.. .+.+..++-.+...|||||||+|.++...+.+. ...+++.
T Consensus 379 Ye~fekD~vRy~~Y~~AI~~-------al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyA 451 (745)
T 3ua3_A 379 YNTFEQDQIKYDVYGEAVVG-------ALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYI 451 (745)
T ss_dssp HHHHHHCHHHHHHHHHHHHH-------HHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred HHHHcCChhhHHHHHHHHHH-------HHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEE
Confidence 55566666666666665543 222222211235689999999999975432221 2347888
Q ss_pred ecc-hhHHhhCCC------CCCceEEEccCCC-CC------CCC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEE
Q 017777 231 FDL-PHVIQDAPA------FPGVEHVGGDMFV-SV------PKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVI 295 (366)
Q Consensus 231 ~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~------~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~ll 295 (366)
++. +.++...+. .++|+++.+|+.+ .. ++. |+|++-..=+....+-....|..+.+.|||||.++
T Consensus 452 VEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 452 VEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp EECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred EeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 886 433322111 2679999999988 44 443 99988654333233434567888889999999754
No 269
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.11 E-value=2.4e-06 Score=76.64 Aligned_cols=99 Identities=19% Similarity=0.157 Sum_probs=73.4
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----------CCCceEEEccCCCCC--C-C-CCEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----------FPGVEHVGGDMFVSV--P-K-GDAI 263 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~--~-~-~D~i 263 (366)
+++.+||-||+|.|..+..+++..+..+++.+|+ |.+++.+++ .+|++++.+|.++-. . + .|+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 5678999999999999999998767678888888 888876654 278999999988722 2 2 3999
Q ss_pred EeccccccCChH--HHHHHHHHHHHhCCCCcEEEEEc
Q 017777 264 FIKWICHDWSDE--HCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 264 ~~~~~lh~~~~~--~~~~~L~~~~~~L~pgG~lli~e 298 (366)
+.-..=-.-+.. -...+++.++++|+|||.++..-
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 864221000000 01378999999999999999864
No 270
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.10 E-value=2.5e-06 Score=75.61 Aligned_cols=83 Identities=11% Similarity=0.147 Sum_probs=59.6
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCC---
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPK--- 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~--- 259 (366)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 94 (255)
T 3tqs_A 18 LQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKT 94 (255)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhcc
Confidence 445666665 6677899999999999999999875 57888887 777776643 3689999999987 5532
Q ss_pred -CCEEEeccccccCCh
Q 017777 260 -GDAIFIKWICHDWSD 274 (366)
Q Consensus 260 -~D~i~~~~~lh~~~~ 274 (366)
....+..+.-++.+.
T Consensus 95 ~~~~~vv~NlPY~is~ 110 (255)
T 3tqs_A 95 DKPLRVVGNLPYNIST 110 (255)
T ss_dssp SSCEEEEEECCHHHHH
T ss_pred CCCeEEEecCCcccCH
Confidence 223344455554443
No 271
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.06 E-value=4.3e-06 Score=74.05 Aligned_cols=131 Identities=18% Similarity=0.099 Sum_probs=82.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHh-------CCC-----CeEEEecc-h---hHHhh-----------CC------------
Q 017777 201 GLNSVVDVGGGIGATLNMIISK-------YPS-----IKGINFDL-P---HVIQD-----------AP------------ 241 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~~-----------a~------------ 241 (366)
+..+|||||+|+|..+..+++. .|+ ++++.++. | +.+.. ++
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988887664 564 57888875 4 22221 11
Q ss_pred --------CCCCceEEEccCCC--C-CCC-----CCEEEecc-ccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCC
Q 017777 242 --------AFPGVEHVGGDMFV--S-VPK-----GDAIFIKW-ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVT 304 (366)
Q Consensus 242 --------~~~~v~~~~~D~~~--~-~~~-----~D~i~~~~-~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 304 (366)
...+++++.+|..+ + .+. .|+|++-. .-...|+--...+|+.+++.|+|||+|+....
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa----- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS----- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC-----
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC-----
Confidence 01346788888765 2 222 39998732 11111111124789999999999999885221
Q ss_pred CCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 305 PDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
...+++.|.++||++.++...+...-++.++|
T Consensus 215 ----------------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~ 246 (257)
T 2qy6_A 215 ----------------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLCGVM 246 (257)
T ss_dssp ----------------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEEEEE
T ss_pred ----------------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEEEEe
Confidence 12356778889999776655544455666655
No 272
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=97.95 E-value=1e-05 Score=71.36 Aligned_cols=112 Identities=15% Similarity=0.099 Sum_probs=71.6
Q ss_pred chhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEE-c-cCCCCC
Q 017777 185 STITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVG-G-DMFVSV 257 (366)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~-~-D~~~~~ 257 (366)
+.+-+.++.+.+. +....+|||+|||+|.++..+++..+-..++++|+ ......+.. ..++.... . |+.. +
T Consensus 75 AAfKL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~-l 152 (282)
T 3gcz_A 75 GSAKLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFN-M 152 (282)
T ss_dssp HHHHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGG-S
T ss_pred HHHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhh-c
Confidence 3345667788774 77788999999999999998887766556778886 222111111 11233222 2 4332 2
Q ss_pred C--CCCEEEeccccc----cCChHHHHHHHHHHHHhCCCC--cEEEEEc
Q 017777 258 P--KGDAIFIKWICH----DWSDEHCVKFLKNCYEALPVN--GKVIVAE 298 (366)
Q Consensus 258 ~--~~D~i~~~~~lh----~~~~~~~~~~L~~~~~~L~pg--G~lli~e 298 (366)
+ ..|+|++-...+ ..+......+|+-+.++|+|| |.+++--
T Consensus 153 ~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~Kv 201 (282)
T 3gcz_A 153 EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKV 201 (282)
T ss_dssp CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 2 239999977766 111112235788889999999 9988843
No 273
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=97.91 E-value=0.0002 Score=65.61 Aligned_cols=145 Identities=12% Similarity=0.104 Sum_probs=101.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecchhHHhhCC-----------------------------CCCCceEEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISK-YPSIKGINFDLPHVIQDAP-----------------------------AFPGVEHVG 250 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------------------------~~~~v~~~~ 250 (366)
+...|+-+|||.=....++... .++++++-+|.|++++.-+ ..++.+++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4679999999999999999875 3678899999988875311 125788999
Q ss_pred ccCCC--C---------CCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhc
Q 017777 251 GDMFV--S---------VPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHV 317 (366)
Q Consensus 251 ~D~~~--~---------~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 317 (366)
.|+.+ . +... -++++-.+|.+++.++...+|+.+.+.. |+|.+++.|.+.++++. ...|
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~d~f-------g~~M 241 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMGDRF-------GQIM 241 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTTSHH-------HHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCCCHH-------HHHH
Confidence 99876 1 2222 5677789999999999999999999987 56677778988654311 1111
Q ss_pred chhhHhhC---CC-CccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 318 DCIMLAHN---PG-GKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 318 ~~~~~~~~---~~-~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
--++.... .+ ....+.++..++|.++||+.+++...
T Consensus 242 ~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 242 IENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 00111000 01 12347889999999999998776654
No 274
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=97.84 E-value=1.1e-05 Score=73.05 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=60.8
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-C--C--
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-S--V-- 257 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~--~-- 257 (366)
+..+++.+. ..+..+|||+|||+|..+..+++.+|+.+++++|. +.+++.+++. .+++++++|+.+ + .
T Consensus 15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 455666665 56678999999999999999999998889999998 8888766542 589999999765 2 1
Q ss_pred ---CCCCEEEecc
Q 017777 258 ---PKGDAIFIKW 267 (366)
Q Consensus 258 ---~~~D~i~~~~ 267 (366)
...|.|++..
T Consensus 94 ~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 94 LGIEKVDGILMDL 106 (301)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCCCEEEEcC
Confidence 1238888643
No 275
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=97.82 E-value=5.2e-06 Score=77.77 Aligned_cols=87 Identities=7% Similarity=0.038 Sum_probs=61.8
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCC---CC-------------
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVS---VP------------- 258 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~~------------- 258 (366)
..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ ++++++.+|..+. .+
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 4689999999999999888743 47999997 7787776542 5799999998651 11
Q ss_pred ---CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 259 ---KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 259 ---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
..|+|++.---. .+..++.+.|+|+|+++.+.
T Consensus 292 ~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 292 KSYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp GGCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEE
T ss_pred ccCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEE
Confidence 238888632211 23445566677889888865
No 276
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.79 E-value=3.9e-05 Score=77.67 Aligned_cols=111 Identities=13% Similarity=-0.048 Sum_probs=75.7
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC------------------------------------------CC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY------------------------------------------PS 225 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~------------------------------------------p~ 225 (366)
.+..++.... +.+...|||.+||+|.++..++... +.
T Consensus 178 LAa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 178 LAAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 3445565555 7778899999999999998877642 33
Q ss_pred CeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCC----CCCEEEecccccc-C-ChHHHHHHHHHHHHh---
Q 017777 226 IKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVP----KGDAIFIKWICHD-W-SDEHCVKFLKNCYEA--- 287 (366)
Q Consensus 226 ~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~----~~D~i~~~~~lh~-~-~~~~~~~~L~~~~~~--- 287 (366)
.+++++|+ +.+++.++.+ ..+++.++|+.+ ..| ..|+|+++--... + ..++...+.+.+.+.
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~ 336 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN 336 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence 67999998 8888877653 358999999976 223 2399999744421 2 223444455544444
Q ss_pred CCCCcEEEEEcc
Q 017777 288 LPVNGKVIVAES 299 (366)
Q Consensus 288 L~pgG~lli~e~ 299 (366)
+.|||++.|+..
T Consensus 337 ~~~g~~~~ilt~ 348 (703)
T 3v97_A 337 QFGGWNLSLFSA 348 (703)
T ss_dssp HCTTCEEEEEES
T ss_pred hCCCCeEEEEeC
Confidence 458999988754
No 277
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=97.76 E-value=2.5e-05 Score=73.20 Aligned_cols=91 Identities=13% Similarity=-0.037 Sum_probs=68.3
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---------------------CCceEEEccCCCC---
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---------------------PGVEHVGGDMFVS--- 256 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~~v~~~~~D~~~~--- 256 (366)
..+|||+|||+|..+..++.+.+..+++++|+ +.+++.++++ .+++++.+|..+.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 57999999999999999999988888999998 7776655431 2378889997651
Q ss_pred CCC-CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 257 VPK-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 257 ~~~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.+. .|+|++.- .. . ...+|+.+.+.|+|||.+++..
T Consensus 128 ~~~~fD~I~lDP-~~--~---~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 128 RHRYFHFIDLDP-FG--S---PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp STTCEEEEEECC-SS--C---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEeCC-CC--C---HHHHHHHHHHhcCCCCEEEEEe
Confidence 222 39988532 21 1 1478999999999999877754
No 278
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=97.73 E-value=5.9e-05 Score=68.64 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=66.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCC-----CCCEEE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVP-----KGDAIF 264 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~-----~~D~i~ 264 (366)
..+..+|||+|||+|..+..+++.. +..+++++|+ +..++.++++ .+++++.+|+.+ +.. ..|.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4567899999999999999999875 4578999997 7666655432 579999999876 221 239988
Q ss_pred ec------cccccCChH---------H-------HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 265 IK------WICHDWSDE---------H-------CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 265 ~~------~~lh~~~~~---------~-------~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+. .++...++. + ..++|+.+.+.++ ||+|+...-
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTC 235 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTC 235 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECC
Confidence 62 223221111 1 1357888877776 888777554
No 279
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.72 E-value=2.2e-05 Score=77.12 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=75.2
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC------------------CCeEEEecc-hhHHhhCCC------CC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYP------------------SIKGINFDL-PHVIQDAPA------FP 244 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~------~~ 244 (366)
..+++.+. .....+|+|.+||+|.++..+.+... ...++++|+ +.+++.++. ..
T Consensus 159 ~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~ 237 (541)
T 2ar0_A 159 KTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 237 (541)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 33444444 44567999999999999988776532 246899997 777665542 13
Q ss_pred C-----ceEEEccCCC-C-CC--CCCEEEeccccccCC------------hHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 245 G-----VEHVGGDMFV-S-VP--KGDAIFIKWICHDWS------------DEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 245 ~-----v~~~~~D~~~-~-~~--~~D~i~~~~~lh~~~------------~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. +.+.++|.+. + .+ ..|+|+++--+.... ......++..+.+.|+|||++.++-+
T Consensus 238 ~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 238 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 3 7899999887 3 22 349999975554321 11124789999999999999988743
No 280
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=97.70 E-value=3.8e-05 Score=68.08 Aligned_cols=98 Identities=16% Similarity=0.207 Sum_probs=65.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-h-------hHHhhCCCC-------CCceEEEccCCC--C-CC--
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-P-------HVIQDAPAF-------PGVEHVGGDMFV--S-VP-- 258 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~~-------~~v~~~~~D~~~--~-~~-- 258 (366)
..+..+|||+|||+|..+..++.. +.+++++|+ + .+++.++++ .+++++.+|..+ + ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 344579999999999999999985 568999998 7 777766543 469999999875 2 32
Q ss_pred --CCCEEEeccccccCCh------------------HHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 259 --KGDAIFIKWICHDWSD------------------EHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 259 --~~D~i~~~~~lh~~~~------------------~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
..|+|++.-.+++-.. .+...+++.+.++.+ .+++|..+.
T Consensus 159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~--~~vvvk~p~ 218 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK--KRVVVKRPR 218 (258)
T ss_dssp HCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS--SEEEEEEET
T ss_pred CCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC--cEEEEEcCC
Confidence 3499998765543211 123455666666653 356665543
No 281
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.65 E-value=0.00016 Score=66.66 Aligned_cols=96 Identities=9% Similarity=0.011 Sum_probs=66.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCC-CCCC--CEEEeccccccCChH
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVS-VPKG--DAIFIKWICHDWSDE 275 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~-~~~~--D~i~~~~~lh~~~~~ 275 (366)
+..+.++||+||++|.++..++++ +.+++++|..++-......++|+++.+|.+.. .+.. |+|++-.+.+ ..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 456789999999999999999986 57899999744434444568999999999883 3333 9999877764 23
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 276 HCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 276 ~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
....++.+.......++.++.+..
T Consensus 284 ~~~~l~~~wl~~~~~~~aI~~lKL 307 (375)
T 4auk_A 284 KVAALMAQWLVNGWCRETIFNLKL 307 (375)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEEEC
T ss_pred HhHHHHHHHHhccccceEEEEEEe
Confidence 334445554444444455555443
No 282
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.61 E-value=0.00025 Score=62.93 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=69.1
Q ss_pred chhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecch-hHHhhCCC----CCCce-EEEc-cCCCCC
Q 017777 185 STITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLP-HVIQDAPA----FPGVE-HVGG-DMFVSV 257 (366)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~~v~-~~~~-D~~~~~ 257 (366)
+.+-+.++.+. .-+.+..+|||+||++|.++..+++..+-..++++|+. ........ ..++. +..+ |++.-.
T Consensus 66 aa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~ 144 (300)
T 3eld_A 66 GAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMP 144 (300)
T ss_dssp THHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSC
T ss_pred HHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecC
Confidence 33445566666 43567889999999999999999987655567778762 11111110 01222 3322 443311
Q ss_pred C-CCCEEEeccccccCCh----H-HHHHHHHHHHHhCCCC-cEEEEEc
Q 017777 258 P-KGDAIFIKWICHDWSD----E-HCVKFLKNCYEALPVN-GKVIVAE 298 (366)
Q Consensus 258 ~-~~D~i~~~~~lh~~~~----~-~~~~~L~~~~~~L~pg-G~lli~e 298 (366)
+ ..|+|++....+ -+. . ....+|+-+.++|+|| |.+++--
T Consensus 145 ~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~Kv 191 (300)
T 3eld_A 145 TEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKV 191 (300)
T ss_dssp CCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEE
T ss_pred CCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 2 239999876655 221 1 2246688889999999 9998853
No 283
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.54 E-value=3.2e-05 Score=72.56 Aligned_cols=92 Identities=13% Similarity=0.009 Sum_probs=69.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC-------CC-ceEEEccCCC--C--CCC-CCEEEe
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF-------PG-VEHVGGDMFV--S--VPK-GDAIFI 265 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------~~-v~~~~~D~~~--~--~~~-~D~i~~ 265 (366)
+..+|||++||+|.++..++.+.++ .+++++|+ +..++.++++ ++ ++++.+|.++ . .+. .|+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4579999999999999999998765 47899998 7777766542 33 8999999865 2 222 399987
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.- +..+ ..+++.+.+.|+|||.|++..
T Consensus 132 DP--~g~~----~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP--FGTP----VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC--SSCC----HHHHHHHHHHEEEEEEEEEEE
T ss_pred CC--CcCH----HHHHHHHHHHhCCCCEEEEEe
Confidence 64 1111 357899999999999777755
No 284
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=97.53 E-value=0.00029 Score=63.96 Aligned_cols=144 Identities=9% Similarity=0.015 Sum_probs=93.2
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC---------CCCceEEEccCCCCC---------C-CC-
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA---------FPGVEHVGGDMFVSV---------P-KG- 260 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~~---------~-~~- 260 (366)
+...||++|||-=....++.. .++++++-+|.|.+++..++ ..+..++..|+.+.. . ..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 457899999998888777652 12478999999888765432 356888999987521 1 11
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhc-chh-hHh-----hCCCCcc-CC
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHV-DCI-MLA-----HNPGGKE-RT 332 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~-~~~-~~~-----~~~~~~~-~t 332 (366)
-++++-.+||++++++...+|+.+.+.+.||+.|++- .+.++.... ........ ... ... ....... ++
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d-~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 257 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE-TSPLHGDEW--REQMQLRFRRVSDALGFEQAVDVQELIYHDE 257 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE-CCCTTCSHH--HHHHHHHHHHHHC-----------CCTTCCT
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEE-ecCCCCcch--hHHHHHHHHHHHHHcCCcCCCCccccccCCC
Confidence 4677789999999999999999999999998887764 443332100 00000000 000 000 0001112 25
Q ss_pred -HHHHHHHHHHcCCcee
Q 017777 333 -EQEFRALAKAAGFQGF 348 (366)
Q Consensus 333 -~~e~~~ll~~aGf~~~ 348 (366)
.++..++|.+.||+.+
T Consensus 258 ~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 258 NRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TCCCHHHHHTTTTEEEE
T ss_pred ChHHHHHHHHHCcCccc
Confidence 7889999999999987
No 285
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.44 E-value=0.00035 Score=70.47 Aligned_cols=100 Identities=11% Similarity=0.021 Sum_probs=67.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCC---CCeEEEecc-hhHHhhC--C----C----C--CCceEEEccCCCCC--C--C
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYP---SIKGINFDL-PHVIQDA--P----A----F--PGVEHVGGDMFVSV--P--K 259 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~----~----~--~~v~~~~~D~~~~~--~--~ 259 (366)
....+|||.|||+|.++..+++..+ ..+++++|+ +.+++.+ + . + ....+...|++.+. + .
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3567999999999999999998876 357899997 6666555 1 1 1 22355666666521 2 2
Q ss_pred CCEEEecccccc-CCh-HH-------------------------HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 GDAIFIKWICHD-WSD-EH-------------------------CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 ~D~i~~~~~lh~-~~~-~~-------------------------~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.|+|+++--+-. +.. .. ...++..+.+.|+|||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 399999755411 111 11 23478889999999999988754
No 286
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=97.43 E-value=0.00058 Score=59.31 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=67.3
Q ss_pred chhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHh--CCCCeE--EEecchhHHhhCCCC-CCc---eEEEc-cCCC
Q 017777 185 STITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISK--YPSIKG--INFDLPHVIQDAPAF-PGV---EHVGG-DMFV 255 (366)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~--~~~D~~~~~~~a~~~-~~v---~~~~~-D~~~ 255 (366)
+.+-+.++.+++ -+.+..+|||+||+.|.++...++. ...+.+ +++|+ + +.-.... .++ .++.+ |+++
T Consensus 58 AayKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P~~~~~~Gv~~i~~~~G~Df~~ 134 (269)
T 2px2_A 58 GTAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEPMLMQSYGWNIVTMKSGVDVFY 134 (269)
T ss_dssp HHHHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCCCCCCSTTGGGEEEECSCCGGG
T ss_pred HHHHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCCCcccCCCceEEEeeccCCccC
Confidence 334466777776 3778899999999999999988775 211122 33442 1 1111111 455 44446 9987
Q ss_pred CCC-CCCEEEeccccccCC----hHH-HHHHHHHHHHhCCCCc-EEEEEcc
Q 017777 256 SVP-KGDAIFIKWICHDWS----DEH-CVKFLKNCYEALPVNG-KVIVAES 299 (366)
Q Consensus 256 ~~~-~~D~i~~~~~lh~~~----~~~-~~~~L~~~~~~L~pgG-~lli~e~ 299 (366)
..+ ..|+|++-..-. -+ |.. ...+|.-+.++|+||| .+++--+
T Consensus 135 ~~~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 135 KPSEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp SCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CCCCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 333 349998854332 11 111 2236777889999999 8887433
No 287
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.39 E-value=0.00094 Score=57.13 Aligned_cols=108 Identities=15% Similarity=0.099 Sum_probs=72.0
Q ss_pred hhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhh---CCCC--CCceEEEc-cCCC-CCC
Q 017777 187 ITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQD---APAF--PGVEHVGG-DMFV-SVP 258 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~~--~~v~~~~~-D~~~-~~~ 258 (366)
+.+.++.+.+. +....+|||+||++|.++...+....-.+++++|+ +.-.+. .+.+ ..|+|+.+ |++. +..
T Consensus 65 ~KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~ 143 (267)
T 3p8z_A 65 AKLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPE 143 (267)
T ss_dssp HHHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCc
Confidence 44667788775 77788999999999999997777765557899997 221111 1112 56999999 9765 222
Q ss_pred CCCEEEeccccccCC-hHHH---HHHHHHHHHhCCCCcEEEE
Q 017777 259 KGDAIFIKWICHDWS-DEHC---VKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 259 ~~D~i~~~~~lh~~~-~~~~---~~~L~~~~~~L~pgG~lli 296 (366)
..|+|+|-..=..-+ .-+. ..+|.-+.++|++ |.++|
T Consensus 144 ~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~ 184 (267)
T 3p8z_A 144 KCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI 184 (267)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred cccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence 359998854332211 1121 3467777899998 66666
No 288
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.34 E-value=7.7e-05 Score=73.19 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=71.6
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC---------------CCeEEEecc-hhHHhhCCCC-------C
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYP---------------SIKGINFDL-PHVIQDAPAF-------P 244 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~~-------~ 244 (366)
+...+++.+. . ...+|+|.+||+|.++..+.+... ...++++|+ +.++..++.. .
T Consensus 233 Vv~lmv~ll~-p-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~ 310 (544)
T 3khk_A 233 IVTLIVEMLE-P-YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDF 310 (544)
T ss_dssp HHHHHHHHHC-C-CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHh-c-CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 3444444443 2 234999999999999888765432 467899998 7776665431 2
Q ss_pred CceEEEccCCC-C-CCC--CCEEEecccccc--CChH-------------------------HHHHHHHHHHHhCCCCcE
Q 017777 245 GVEHVGGDMFV-S-VPK--GDAIFIKWICHD--WSDE-------------------------HCVKFLKNCYEALPVNGK 293 (366)
Q Consensus 245 ~v~~~~~D~~~-~-~~~--~D~i~~~~~lh~--~~~~-------------------------~~~~~L~~~~~~L~pgG~ 293 (366)
++.+.++|.+. + .+. .|+|+++--+.. |..+ ....++..+.+.|+|||+
T Consensus 311 ~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr 390 (544)
T 3khk_A 311 NFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGS 390 (544)
T ss_dssp BCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEE
T ss_pred ccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCce
Confidence 34447888776 3 232 399998644431 2211 012589999999999999
Q ss_pred EEEEc
Q 017777 294 VIVAE 298 (366)
Q Consensus 294 lli~e 298 (366)
+.++-
T Consensus 391 ~aiVl 395 (544)
T 3khk_A 391 MALLL 395 (544)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88864
No 289
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.29 E-value=7.7e-05 Score=65.92 Aligned_cols=77 Identities=13% Similarity=0.237 Sum_probs=54.0
Q ss_pred HHHhccCCCCC--CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhH-------HhhCCC-------C-CCceEEEccC
Q 017777 192 ILENYKGFEGL--NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHV-------IQDAPA-------F-PGVEHVGGDM 253 (366)
Q Consensus 192 ~~~~~~~~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~-------~-~~v~~~~~D~ 253 (366)
+.+.+. ..+. .+|||+|||+|..+..++.+ +.+++++|. +.+ ++.++. . .+++++++|.
T Consensus 78 l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp HHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 444443 4555 79999999999999999987 457999997 543 333221 1 4689999998
Q ss_pred CC---CCCC-CCEEEecccccc
Q 017777 254 FV---SVPK-GDAIFIKWICHD 271 (366)
Q Consensus 254 ~~---~~~~-~D~i~~~~~lh~ 271 (366)
.+ ..+. .|+|++.-.+++
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHHhCcccCCEEEEcCCCCC
Confidence 65 2333 499999876654
No 290
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.23 E-value=0.00022 Score=66.05 Aligned_cols=96 Identities=18% Similarity=0.129 Sum_probs=68.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------------CCceEEEccCCCCC-------C
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------------PGVEHVGGDMFVSV-------P 258 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~D~~~~~-------~ 258 (366)
++.+||-||+|.|..+.++++. |.-+++.+|+ |.+++.++++ +|++++.+|..+-. .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999999874 5568888888 8888776531 46888888876411 1
Q ss_pred CCCEEEeccccc-------cCC-hHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 259 KGDAIFIKWICH-------DWS-DEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 259 ~~D~i~~~~~lh-------~~~-~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
..|+|+.-..=. ... ..-...+++.++++|+|||.++..
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 249998742211 001 111357899999999999998875
No 291
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=97.17 E-value=0.0018 Score=57.30 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=70.1
Q ss_pred hhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhH-Hh---hCCCC--CCceEEEc-cCCC-CCC
Q 017777 187 ITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHV-IQ---DAPAF--PGVEHVGG-DMFV-SVP 258 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~-~~---~a~~~--~~v~~~~~-D~~~-~~~ 258 (366)
+.+.++.+.+. +....+|||+||++|.++...+....-.+++++|+-.. .+ ..+.. .-|.++.+ |++. +..
T Consensus 81 ~KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~ 159 (321)
T 3lkz_A 81 AKLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSE 159 (321)
T ss_dssp HHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCC
Confidence 45667777765 77778999999999999997776655557899997211 11 01111 33788887 8765 222
Q ss_pred CCCEEEeccccccCChH--H---HHHHHHHHHHhCCCC-cEEEE
Q 017777 259 KGDAIFIKWICHDWSDE--H---CVKFLKNCYEALPVN-GKVIV 296 (366)
Q Consensus 259 ~~D~i~~~~~lh~~~~~--~---~~~~L~~~~~~L~pg-G~lli 296 (366)
..|+|+|--. .--+.+ + ...+|.-+.++|++| |.++|
T Consensus 160 ~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 160 CCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 3488887544 221221 1 134777778999988 77776
No 292
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.17 E-value=0.00048 Score=54.56 Aligned_cols=84 Identities=17% Similarity=0.095 Sum_probs=58.5
Q ss_pred CCCeEEEEeCCcc-HHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCC----CCCEEEeccccccCCh
Q 017777 201 GLNSVVDVGGGIG-ATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVP----KGDAIFIKWICHDWSD 274 (366)
Q Consensus 201 ~~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~----~~D~i~~~~~lh~~~~ 274 (366)
...+|||||||.| ..+..|++. .++.++++|+ |..++ +++.|+|+|.. ..|+|...+- +
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsirP-----P 99 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIRP-----P 99 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEESC-----C
T ss_pred CCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcCC-----C
Confidence 4579999999999 588877764 4678999997 55543 88899998655 3399966443 3
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.+....+.++.+.. |.-++|.....
T Consensus 100 ~El~~~i~~lA~~v--~adliI~pL~~ 124 (153)
T 2k4m_A 100 AEIHSSLMRVADAV--GARLIIKPLTG 124 (153)
T ss_dssp TTTHHHHHHHHHHH--TCEEEEECBTT
T ss_pred HHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 44455555666643 56777765433
No 293
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=97.16 E-value=0.00014 Score=83.14 Aligned_cols=142 Identities=15% Similarity=0.079 Sum_probs=63.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCC-----CeEEEecc-hhHHhhCCCC-C--CceEEEccCCCC---CCC-CCEEEecc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPS-----IKGINFDL-PHVIQDAPAF-P--GVEHVGGDMFVS---VPK-GDAIFIKW 267 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-~--~v~~~~~D~~~~---~~~-~D~i~~~~ 267 (366)
...+||+||+|+|..+..+++.... .+++..|+ +...+.+++. . .+.....|..++ .+. +|+|+..+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 3569999999999887777666532 24566676 4444445432 1 122222233222 122 39999999
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCce
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQG 347 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 347 (366)
+||.-++ ....|+++++.|||||++++.+......-.. ........ . .......+.++|.++|.++||..
T Consensus 1320 vl~~t~~--~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~-----~~~~~~~~--~-r~~~~~~~~~~w~~~l~~~gf~~ 1389 (2512)
T 2vz8_A 1320 ALATLGD--PAVAVGNMAATLKEGGFLLLHTLLAGHPLGE-----MVGFLTSP--E-QGGRHLLSQDQWESLFAGASLHL 1389 (2512)
T ss_dssp C----------------------CCEEEEEEC----------------------------------CTTTTSSTTTTEEE
T ss_pred ccccccc--HHHHHHHHHHhcCCCcEEEEEeccccccccc-----cccccccc--c-ccCCcccCHHHHHHHHHhCCCce
Confidence 9996443 3578999999999999999987542110000 00000000 0 00122346778999999999998
Q ss_pred eEEEE
Q 017777 348 FQVVS 352 (366)
Q Consensus 348 ~~~~~ 352 (366)
+....
T Consensus 1390 ~~~~~ 1394 (2512)
T 2vz8_A 1390 VALKR 1394 (2512)
T ss_dssp EEEEE
T ss_pred eeecc
Confidence 76543
No 294
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.11 E-value=0.0014 Score=55.34 Aligned_cols=90 Identities=10% Similarity=0.028 Sum_probs=58.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC---------CCCceEEEccCCCC--------------
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA---------FPGVEHVGGDMFVS-------------- 256 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~~-------------- 256 (366)
+..+||||||| ..+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|..+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 46899999985 55555665 45778988886 555554432 34789999985421
Q ss_pred ----------CC---CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 257 ----------VP---KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 257 ----------~~---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
.+ ..|+|++-.-. ....+..+.+.|+|||.|++-+..
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv~DNv~ 156 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLLFDDYS 156 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEEETTGG
T ss_pred HHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEEEeCCc
Confidence 11 23999985421 124455577899999999654433
No 295
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=96.99 E-value=0.0015 Score=63.97 Aligned_cols=99 Identities=17% Similarity=0.103 Sum_probs=70.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhC---CCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCC-CCC---C--CCE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKY---PSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFV-SVP---K--GDA 262 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~-~~~---~--~D~ 262 (366)
...+|+|.+||+|.++..+.+.. +...++++|+ +.++..++.+ +++.+.++|.+. +.| . .|+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 45799999999999999988875 3568999998 6666655431 356889999886 322 2 399
Q ss_pred EEeccccc-cCChH--------------------HHHHHHHHHHHhCC-CCcEEEEEcc
Q 017777 263 IFIKWICH-DWSDE--------------------HCVKFLKNCYEALP-VNGKVIVAES 299 (366)
Q Consensus 263 i~~~~~lh-~~~~~--------------------~~~~~L~~~~~~L~-pgG~lli~e~ 299 (366)
|+++--+. .|... ....++..+.+.|+ |||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 99863321 12100 01258999999999 9999988653
No 296
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=96.93 E-value=0.0023 Score=57.15 Aligned_cols=96 Identities=18% Similarity=0.105 Sum_probs=66.2
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhC-----CCCeEEEecc----hh-----------------------HHhhCCC-----
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKY-----PSIKGINFDL----PH-----------------------VIQDAPA----- 242 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~----~~-----------------------~~~~a~~----- 242 (366)
..+.+|||+|+..|..+..++... ++.+++++|. |+ ..+.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 346899999999999988877654 4778988883 11 0111111
Q ss_pred ---CCCceEEEccCCCC---CCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 243 ---FPGVEHVGGDMFVS---VPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 243 ---~~~v~~~~~D~~~~---~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.++|+++.||+.+. .+.. |+|++-.-.+ +.....|..+...|+|||.|++-+.
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 16899999998762 3222 7777654322 3345789999999999998887553
No 297
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.89 E-value=0.008 Score=60.82 Aligned_cols=148 Identities=14% Similarity=0.080 Sum_probs=101.0
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCC--------CCeEEEecchhHHhhCCC------------------------------
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYP--------SIKGINFDLPHVIQDAPA------------------------------ 242 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------ 242 (366)
+...|+-+|||.=....+|....+ +++++-+|.|++++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 467899999999999999988755 778889998888653211
Q ss_pred CCCceEEEccCCCC-----------C-CCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCc
Q 017777 243 FPGVEHVGGDMFVS-----------V-PKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTS 308 (366)
Q Consensus 243 ~~~v~~~~~D~~~~-----------~-~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~ 308 (366)
.++.+++..|+.+. + ... -++++-.+|.+++.++...+|+.+.+ + |+|.+++.|.+.+......
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~ 264 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEP 264 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSH
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCCh
Confidence 03788999999761 1 222 46677899999999999999999985 4 7889999898776532222
Q ss_pred hhhhhhhhcchhhHhh-C-CCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 309 LASKVVIHVDCIMLAH-N-PGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 309 ~~~~~~~~~~~~~~~~-~-~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
..... ..++..... . .-....+.++..+.|.+.||+.+....
T Consensus 265 f~~~m--~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~ 308 (695)
T 2zwa_A 265 FSKQM--LAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGD 308 (695)
T ss_dssp HHHHH--HHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHH--HHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceee
Confidence 11111 111111000 0 001234799999999999998766554
No 298
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=96.79 E-value=0.00096 Score=50.65 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=54.5
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhC--CCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQL--PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~--~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
.+..|++.|.+. |+.|+.+||+.+ ++ ++..+++.|+.|...|+|+.. | .+.|++|+.+..++.
T Consensus 14 ~d~~IL~~L~~~---g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~------~--rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 14 WDDRILEIIHEE---GNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL------A--NGVYVITEEGEAYLN 78 (111)
T ss_dssp HHHHHHHHHHHH---SCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC------S--TTCEEECHHHHHHHT
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec------C--CceEEECchHHHHHH
Confidence 346688889875 599999999999 99 999999999999999999962 1 458999999987665
Q ss_pred C
Q 017777 119 N 119 (366)
Q Consensus 119 ~ 119 (366)
.
T Consensus 79 ~ 79 (111)
T 3b73_A 79 G 79 (111)
T ss_dssp T
T ss_pred H
Confidence 4
No 299
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=96.74 E-value=0.00046 Score=64.96 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=49.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCCC--C-C--CCCEEEec
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFVS--V-P--KGDAIFIK 266 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~--~-~--~~D~i~~~ 266 (366)
...+|||+|||+|..+..+++. ..+++++|+ +.+++.++++ .+++++++|+.+. . + ..|+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 3689999999999999988875 458999997 7777766532 4689999999862 2 1 34999984
No 300
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=96.65 E-value=0.0019 Score=57.19 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=52.2
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--CCceEEEccCCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--PGVEHVGGDMFV 255 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~ 255 (366)
.++.+++.+. ..+...+||.+||.|..+..++++ +.+++++|. |.+++.+++. +++.++.+|+.+
T Consensus 10 Ll~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 10 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 3567777776 677789999999999999999997 679999998 7777655421 578888888765
No 301
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.56 E-value=0.0016 Score=48.60 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=50.9
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
+.+|.--.++.|+..|.+ +|.|+.|||+.+++ ++..+.+.|+.|...|+|... .+|+ .-.|++++
T Consensus 17 ~~~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~----~~g~-~~~y~l~~ 81 (102)
T 3pqk_A 17 LKTLSHPVRLMLVCTLVE----GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETR----RNIK-QIFYRLTE 81 (102)
T ss_dssp HHHHCSHHHHHHHHHHHT----CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEE----CSSS-CCEEEECS
T ss_pred HHHcCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE----EeCC-EEEEEECc
Confidence 345555667778888876 58999999999999 999999999999999999864 3332 34566664
No 302
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.51 E-value=0.0013 Score=48.47 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=51.5
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
+.++..-.++.|+..| . ++.++.|||+.+++ ++.-+.+.|+.|...|+|... .+.|.+++.+
T Consensus 25 ~~~l~~~~r~~Il~~L-~----~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~---------~g~y~l~~~g 86 (96)
T 1y0u_A 25 NYAVTNPVRRKILRML-D----KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV---------GERWVVTDAG 86 (96)
T ss_dssp HHHHSCHHHHHHHHHH-H----TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECTTT
T ss_pred HHHhCCHHHHHHHHHH-c----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---------CCEEEECCCc
Confidence 3455556677899999 5 48999999999999 999999999999999999963 2478877654
Q ss_pred h
Q 017777 114 K 114 (366)
Q Consensus 114 ~ 114 (366)
.
T Consensus 87 ~ 87 (96)
T 1y0u_A 87 K 87 (96)
T ss_dssp C
T ss_pred h
Confidence 3
No 303
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.49 E-value=0.0013 Score=46.51 Aligned_cols=61 Identities=8% Similarity=0.087 Sum_probs=50.1
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcc-hHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHT-VLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~-~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
.+-.|++.|... ||.|+.+||+.+++ ... .+++.|..|+..|+|... ..| ...|.+|+.+.
T Consensus 12 ~~~~IL~~Lk~~---g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~----~~g--RP~w~LT~~g~ 73 (79)
T 1xmk_A 12 IKEKICDYLFNV---SDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQ----GTT--PPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHHT---CCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEE----CSS--SCEEEECHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEec----CCC--CCCeEeCHhHH
Confidence 345677888887 59999999999999 998 999999999999999853 223 34888888765
No 304
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.48 E-value=0.0011 Score=45.48 Aligned_cols=55 Identities=11% Similarity=0.286 Sum_probs=44.8
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLA 110 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t 110 (366)
+..|++.|.+.+ .|++..|||+.+++ +...+.+.|..|...|+|... . .++|+++
T Consensus 12 ~~~IL~~L~~~~--~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~----~----~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDG--GPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP----S----PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHC--SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE----E----TTEEEEC
T ss_pred HHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecC----C----CceEeeC
Confidence 556888887642 48999999999999 999999999999999998752 1 4677654
No 305
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.36 E-value=0.0012 Score=48.80 Aligned_cols=64 Identities=14% Similarity=0.264 Sum_probs=50.9
Q ss_pred HHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 35 MVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 35 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
.++.-..++.|+..|.+ ++.|+.|||+.+++ ++..+.+.|+.|...|+|... .+|+ ...|.+++
T Consensus 18 ~~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~----~~g~-~~~y~l~~ 81 (98)
T 3jth_A 18 KAMANERRLQILCMLHN----QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTR----KEAQ-TVYYTLKS 81 (98)
T ss_dssp HHHCSHHHHHHHHHTTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----CCTT-CCEEEECC
T ss_pred HHcCCHHHHHHHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE----EeCC-EEEEEECH
Confidence 44555667788888877 49999999999999 999999999999999999864 3332 34566664
No 306
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.30 E-value=0.0014 Score=50.40 Aligned_cols=67 Identities=10% Similarity=0.132 Sum_probs=53.1
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
+.+|.--.++.|+..|.+ +|.++.|||+.+++ ++..+.+.|+.|...|+|... .+|+ ...|++++..
T Consensus 12 ~~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~----~~gr-~~~y~l~~~~ 78 (118)
T 3f6o_A 12 FQALADPTRRAVLGRLSR----GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTH----KQGR-VRTCAIEKEP 78 (118)
T ss_dssp HHHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEE----EETT-EEEEEECSHH
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE----ecCC-EEEEEECHHH
Confidence 455666677888888886 59999999999999 999999999999999999864 2232 3567777543
No 307
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.18 E-value=0.0032 Score=44.81 Aligned_cols=67 Identities=21% Similarity=0.308 Sum_probs=48.4
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFL 116 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l 116 (366)
-.+..|++.|.+.+++.++|+.|||+++|+ +..-+++.|.-|...|+|... +++ .+.|.+.+....+
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~-----g~~-~~~W~i~~~~~~~ 76 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE-----AGT-PPLWKIAVSTQAW 76 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----SSS-SCEEEEC------
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec-----CCC-CCeeEEeCcHHhc
Confidence 345668888887633347999999999999 999999999999999999863 121 4778777655433
No 308
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=96.17 E-value=0.011 Score=53.01 Aligned_cols=132 Identities=17% Similarity=0.137 Sum_probs=75.6
Q ss_pred CCCeEEEEeCCccHHHHHH----HHhCCCCeE--EEecc-h--------hH----H----hhCCC--CCC--ceEEEccC
Q 017777 201 GLNSVVDVGGGIGATLNMI----ISKYPSIKG--INFDL-P--------HV----I----QDAPA--FPG--VEHVGGDM 253 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l----~~~~p~~~~--~~~D~-~--------~~----~----~~a~~--~~~--v~~~~~D~ 253 (366)
..-+|||+|=|+|...... .+..|+.++ +.++. | +. . +.... ..+ +.+..+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 3468999999999865433 344677654 44442 0 00 0 00000 023 34567787
Q ss_pred CC---CCCC--CCEEEeccc-cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC
Q 017777 254 FV---SVPK--GDAIFIKWI-CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG 327 (366)
Q Consensus 254 ~~---~~~~--~D~i~~~~~-lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
.+ ..+. .|++++-.. -..-|+---..+++++++.++|||.+.-..
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt----------------------------- 226 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS----------------------------- 226 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC-----------------------------
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe-----------------------------
Confidence 65 2333 288877321 111111122478999999999999886421
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
....+++-|++|||++.++.-.+...-++.+.++
T Consensus 227 ----aag~VRR~L~~aGF~V~k~~G~g~KReml~A~~~ 260 (308)
T 3vyw_A 227 ----SSLSVRKSLLTLGFKVGSSREIGRKRKGTVASLK 260 (308)
T ss_dssp ----CCHHHHHHHHHTTCEEEEEECC---CEEEEEESS
T ss_pred ----CcHHHHHHHHHCCCEEEecCCCCCCCceeEEecC
Confidence 1235678899999998777665555566666654
No 309
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.14 E-value=0.0026 Score=49.20 Aligned_cols=67 Identities=21% Similarity=0.218 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 33 LPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 33 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
.+.++.-..++.|+..|... ++.|+.|||+.+++ ++..+.+.|+.|...|++... .+|+ ...|++++
T Consensus 35 ~~~al~~~~rl~IL~~L~~~---~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~----~~gr-~~~y~l~~ 101 (122)
T 1u2w_A 35 ILKAIADENRAKITYALCQD---EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFR----KEGK-LALYSLGD 101 (122)
T ss_dssp HHHHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---------CCEEEESC
T ss_pred HHHHhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE----EECC-EEEEEECH
Confidence 34455556678899999854 58999999999999 999999999999999999863 2331 23566664
No 310
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.92 E-value=0.0028 Score=51.02 Aligned_cols=70 Identities=19% Similarity=0.323 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 32 VLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 32 ~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
-.+.+|.--.++.|+..|.. +|.|+.|||+.+++ ++..+.+.|+.|...|+|+.. .+|+ .-.|++++
T Consensus 50 ~~l~aL~~p~R~~IL~~L~~----~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~----~~Gr-~~~y~lt~ 116 (151)
T 3f6v_A 50 DQLEVAAEPTRRRLVQLLTS----GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPR----KDGR-FRYYRLDP 116 (151)
T ss_dssp CHHHHHTSHHHHHHHHHGGG----CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEE----EETT-EEEEEECH
T ss_pred HHHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE----ecCC-EEEEEECh
Confidence 45677788889999999986 59999999999999 999999999999999999864 2332 24688876
Q ss_pred hch
Q 017777 112 VCK 114 (366)
Q Consensus 112 ~~~ 114 (366)
...
T Consensus 117 ~~~ 119 (151)
T 3f6v_A 117 QGL 119 (151)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 311
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=95.89 E-value=0.0029 Score=48.61 Aligned_cols=66 Identities=17% Similarity=0.249 Sum_probs=50.7
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
+.+|.--.++.|+..|.. ++.++.|||+.+++ ++..+.+.|+.|...|++... .+|+ .-.|.+++.
T Consensus 15 ~~aL~~~~r~~IL~~L~~----~~~~~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~----~~gr-~~~y~l~~~ 80 (118)
T 2jsc_A 15 GRALADPTRCRILVALLD----GVCYPGQLAAHLGL----TRSNVSNHLSCLRGCGLVVAT----YEGR-QVRYALADS 80 (118)
T ss_dssp HHHHSSHHHHHHHHHHHT----TCCSTTTHHHHHSS----CHHHHHHHHHHHTTTTSEEEE----ECSS-SEEEEESSH
T ss_pred HHHhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE----EECC-EEEEEEChH
Confidence 344555566778888875 48999999999999 999999999999999999864 2332 245777653
No 312
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=95.81 E-value=0.0029 Score=46.61 Aligned_cols=65 Identities=11% Similarity=0.166 Sum_probs=49.8
Q ss_pred HHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 36 VLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 36 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
++....++.|+..|... ++.|..|||+.+++ ++..+.+.|+.|...|++... .+|+ ...|.+++.
T Consensus 20 ~l~~~~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~----~~~r-~~~y~l~~~ 84 (99)
T 3cuo_A 20 AMSHPKRLLILCMLSGS---PGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQ----RDAQ-RILYSIKNE 84 (99)
T ss_dssp HHCSHHHHHHHHHHTTC---CSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEE----ECSS-CEEEEECCH
T ss_pred HhCChHHHHHHHHHHhC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE----ecCC-EEEEEEChH
Confidence 34445667788888764 48999999999999 999999999999999999874 2221 245666644
No 313
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=95.77 E-value=0.0041 Score=43.83 Aligned_cols=61 Identities=23% Similarity=0.356 Sum_probs=47.6
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
.+..|++.|.+.+.+.++|+.|||+++++ +...+++.|+-|...|+|... .++ .+.|.+++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~-----g~~-~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE-----AGT-PPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEE-----CSS-SCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec-----CCC-CCceEecC
Confidence 35678888888633347999999999999 999999999999999999863 111 46666653
No 314
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=95.75 E-value=0.017 Score=52.42 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=53.7
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC--CCceEEEccCCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF--PGVEHVGGDMFV 255 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~ 255 (366)
.+.++++.+. ..++..+||..||.|..+..+++.. |+.+++++|. |.+++.+++. .|++++.+++.+
T Consensus 45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 4567788776 6778899999999999999999985 7889999998 8888877532 567777776643
No 315
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.67 E-value=0.0032 Score=47.29 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=41.7
Q ss_pred HHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 38 KSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 38 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..-.++.|+..|.. ++.++.|||+.+++ ++..+.+.|+.|...|++...
T Consensus 24 ~~~~r~~IL~~L~~----~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 24 GDYNRIRIMELLSV----SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp CSHHHHHHHHHHHH----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 34455667777775 48999999999999 999999999999999999864
No 316
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=95.62 E-value=0.005 Score=45.36 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=54.5
Q ss_pred HHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 35 MVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 35 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
.++....++.|+..|... ++.|..+||+.+++ ++..+.+.|+.|...|++..... +.++. ...|.+|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~---~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~-~~~~r-~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR---RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKV-IADRP-RTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEE-CSSSC-EEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEec-CCCcc-eEEEEECHHHH
Confidence 456666788888888754 48999999999999 99999999999999999986310 11221 34677877665
Q ss_pred h
Q 017777 115 F 115 (366)
Q Consensus 115 ~ 115 (366)
.
T Consensus 82 ~ 82 (100)
T 1ub9_A 82 E 82 (100)
T ss_dssp H
T ss_pred H
Confidence 3
No 317
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.58 E-value=0.0018 Score=48.89 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=40.6
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.-.++.|+..|.+ ++.|+.|||+.+++ ++..+.+.|+.|...|+|...
T Consensus 24 ~~~r~~IL~~L~~----~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 24 NGRRLQILDLLAQ----GERAVEAIATATGM----NLTTASANLQALKSGGLVEAR 71 (108)
T ss_dssp TSTTHHHHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHc----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 3345556667765 48999999999999 999999999999999999864
No 318
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=95.57 E-value=0.0052 Score=46.59 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=49.1
Q ss_pred HHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 37 LKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 37 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
+....++.|+..|.. +|.|+.|||+.+++ ++..+.+.|+.|...|+|... .+|. ...|.+++.+.
T Consensus 18 l~~~~r~~IL~~L~~----~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~----~~gr-~~~y~l~~~~~ 82 (114)
T 2oqg_A 18 LSDETRWEILTELGR----ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESV----KVGR-EIRYRALGAEL 82 (114)
T ss_dssp TTCHHHHHHHHHHHH----SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEE----EETT-EEEEEECSHHH
T ss_pred hCChHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEE----ecCC-EEEEEechHHH
Confidence 333456678888854 58999999999999 999999999999999999863 1221 23477776543
No 319
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.55 E-value=0.01 Score=41.81 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=39.2
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
|.+.|.+. +.+++.|||+.+++ ++.-++|-|+.|+..|+|.+.
T Consensus 7 Il~~L~~~---g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS---CSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 66778776 59999999999999 999999999999999999874
No 320
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.55 E-value=0.0092 Score=42.89 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=39.3
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
|.+.|.+. |.+++.|||+.+++ ++.-++|.|+.|+..|+|.+.
T Consensus 7 Il~~L~~~---g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQ---GRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHS---CSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 67778776 69999999999999 999999999999999999974
No 321
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.49 E-value=0.0083 Score=42.48 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=46.3
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
.....|++.|.+. +.|+.|||+++|+ +...+++.|..|+..|+|... +|+ .-.|.++...
T Consensus 17 ~~~~~IL~lL~~~----g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~-----~~~-PP~W~~~~~~ 76 (82)
T 1oyi_A 17 EIVCEAIKTIGIE----GATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSS-----DDI-PPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHHSSS----TEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEC-----SSS-SCEEESCC--
T ss_pred HHHHHHHHHHHHc----CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC-----CCC-CCcceeccCc
Confidence 3455677888863 4999999999999 999999999999999999963 221 4567666543
No 322
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=95.47 E-value=0.0057 Score=54.47 Aligned_cols=59 Identities=12% Similarity=0.243 Sum_probs=47.1
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKF 115 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~ 115 (366)
+.|++.|...+ .++|+.|||+.+|+ +..-+.|+|+.|+..|||.++ . ++.|++++....
T Consensus 33 l~IL~~l~~~~--~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~----~----~~~Y~LG~~~~~ 91 (275)
T 3mq0_A 33 VRILDLVAGSP--RDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS----A----DGTLRIGPHSLR 91 (275)
T ss_dssp HHHHHHHHHCS--SCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC----T----TSEEEECTHHHH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC----C----CCcEEehHHHHH
Confidence 45788888753 47999999999999 999999999999999999974 1 467999876543
No 323
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=95.46 E-value=0.012 Score=44.30 Aligned_cols=77 Identities=13% Similarity=0.146 Sum_probs=53.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcccccccccccCCC
Q 017777 22 LLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPD 100 (366)
Q Consensus 22 ~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~ 100 (366)
..+++++.+.|... |+..|.. ++.+..||++.+ ++ ++..+.+.|+.|...|+|++.. .+.|
T Consensus 5 ~~~l~~l~~~~~~~---------IL~~L~~----~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~-~~~d 66 (107)
T 2hzt_A 5 EATLEVIGGKWKXV---------ILXHLTH----GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIV-YNQV 66 (107)
T ss_dssp HHHHHHHCSTTHHH---------HHHHHTT----CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEE-ECSS
T ss_pred HHHHHHHcCccHHH---------HHHHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEee-cCCC
Confidence 44455555554444 3444544 489999999999 99 9999999999999999999752 1122
Q ss_pred Cccccccccchhchhhh
Q 017777 101 GKVERLYGLAPVCKFLT 117 (366)
Q Consensus 101 g~~~~~y~~t~~~~~l~ 117 (366)
+. .-.|.+|+.+..+.
T Consensus 67 ~r-~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 67 PP-KVEYELSEYGRSLE 82 (107)
T ss_dssp SC-EEEEEECTTGGGGH
T ss_pred CC-eEEEEECccHHHHH
Confidence 21 24688887766544
No 324
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.37 E-value=0.0072 Score=42.45 Aligned_cols=35 Identities=23% Similarity=0.143 Sum_probs=33.1
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+|.|+.|||+.+|+ ++..+++-|..|+..|+|.++
T Consensus 23 ~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 23 APVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 59999999999999 889999999999999999974
No 325
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.32 E-value=0.02 Score=42.92 Aligned_cols=84 Identities=13% Similarity=0.174 Sum_probs=60.1
Q ss_pred CccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCC-CCCCCCcchHHHHHHHHhccccccc
Q 017777 15 GSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLP-TKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+........+++++.+.|...+|. .|.. ++.+..||++.++ + ++..+.+.|+.|+..|+|++
T Consensus 9 ~~~~c~~~~~l~~l~~~~~~~IL~---------~L~~----~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r 71 (107)
T 2fsw_A 9 SDEECPVRKSMQIFAGKWTLLIIF---------QINR----RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKK 71 (107)
T ss_dssp CSTTCHHHHHHHHHTSSSHHHHHH---------HHTT----SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred CcCCCCHHHHHHHHcCccHHHHHH---------HHHh----CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEE
Confidence 333456677777777777665443 4443 4899999999995 9 99999999999999999987
Q ss_pred ccccCCCCccccccccchhchhhh
Q 017777 94 SLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 94 ~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.. .+.|+. .-.|.+|+.+..+.
T Consensus 72 ~~-~~~d~r-~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 72 KQ-YPEVPP-RVEYSLTPLGEKVL 93 (107)
T ss_dssp EE-ECSSSC-EEEEEECHHHHTTH
T ss_pred ee-cCCCCC-eeEEEECccHHHHH
Confidence 52 111211 24699998876554
No 326
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.31 E-value=0.0098 Score=45.07 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=53.9
Q ss_pred HHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCC--HHHHHhhC-CCCCCCCcchHHHHHHHHhcccccccccccCC
Q 017777 23 LAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMS--PKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLRNLP 99 (366)
Q Consensus 23 ~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t--~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 99 (366)
.+++.+.+.|... |+..|.. |+.+ +.||++.+ ++ ++..+.+.|+.|...|+|++...
T Consensus 19 ~~l~~l~~~wrl~---------IL~~L~~----g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~--- 78 (111)
T 3df8_A 19 SVLHLLGKKYTML---------IISVLGN----GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG--- 78 (111)
T ss_dssp STHHHHHSTTHHH---------HHHHHTS----SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES---
T ss_pred HHHHHHcCccHHH---------HHHHHhc----CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec---
Confidence 3455555555444 4455554 4878 99999999 99 99999999999999999997421
Q ss_pred CCccccccccchhchhhh
Q 017777 100 DGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 100 ~g~~~~~y~~t~~~~~l~ 117 (366)
. ...|.+|+.+..+.
T Consensus 79 r---~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 79 Q---ITTYALTEKGMNVR 93 (111)
T ss_dssp S---SEEEEECHHHHHHH
T ss_pred C---cEEEEECccHHHHH
Confidence 1 46799998887655
No 327
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.25 E-value=0.0061 Score=47.11 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=42.9
Q ss_pred HHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 37 LKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 37 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+.-..++.|+..|.+ ++.++.+||+.+++ ++..+.+.|+.|...|++...
T Consensus 43 L~~~~rl~IL~~L~~----~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~ 92 (122)
T 1r1t_A 43 LADPNRLRLLSLLAR----SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYR 92 (122)
T ss_dssp HCCHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 334456778888876 48999999999999 999999999999999999864
No 328
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.24 E-value=0.021 Score=44.34 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=37.5
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
++.|.++||+.+++ ++..++++|+.|...|+|+.. .|. .+.|.++.
T Consensus 25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~-----~g~-~ggy~L~~ 70 (129)
T 2y75_A 25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSI-----RGA-YGGYVLGS 70 (129)
T ss_dssp CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC----------CCEEESS
T ss_pred CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEec-----CCC-CCceEeCC
Confidence 58999999999999 999999999999999999853 121 36677764
No 329
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=95.12 E-value=0.017 Score=53.29 Aligned_cols=103 Identities=16% Similarity=0.070 Sum_probs=68.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC------------CCCCceEEEccCCC--C-CCC-CC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP------------AFPGVEHVGGDMFV--S-VPK-GD 261 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~v~~~~~D~~~--~-~~~-~D 261 (366)
...+.+|||+.+|.|.=+..+++..++..++..|+ +.-++..+ ...++.+...|... + .+. .|
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56678999999999999999998877667888886 33332221 11467788888655 1 233 38
Q ss_pred EEEe----cc----cc-------ccCChHH-------HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 262 AIFI----KW----IC-------HDWSDEH-------CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 262 ~i~~----~~----~l-------h~~~~~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.|++ +. ++ +.+..++ -.++|+++.+.|||||+|+-..-..
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 8875 21 11 1222222 2478999999999999988766444
No 330
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=95.08 E-value=0.027 Score=51.80 Aligned_cols=94 Identities=13% Similarity=0.156 Sum_probs=58.7
Q ss_pred HHHHHHhccCCC------CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhH---HhhCCCCCCceEEEccCCC-C-
Q 017777 189 MKKILENYKGFE------GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHV---IQDAPAFPGVEHVGGDMFV-S- 256 (366)
Q Consensus 189 ~~~~~~~~~~~~------~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~~~~v~~~~~D~~~-~- 256 (366)
...+++... .. +...|||||.|.|.++..|+++....+++.+++ +.. ++.....++++++.+|+++ +
T Consensus 41 ~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~~~ 119 (353)
T 1i4w_A 41 YNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWST 119 (353)
T ss_dssp HHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHHH
T ss_pred HHHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccchhh
Confidence 445666554 33 247899999999999999998743335666654 222 2221135789999999975 3
Q ss_pred C----CC--------------C-CEEEeccccccCChHHHHHHHHH
Q 017777 257 V----PK--------------G-DAIFIKWICHDWSDEHCVKFLKN 283 (366)
Q Consensus 257 ~----~~--------------~-D~i~~~~~lh~~~~~~~~~~L~~ 283 (366)
+ .+ . .+.+..|.-++.+.+-..++|..
T Consensus 120 ~~~l~~~~~l~~~~~~~~~~~~~~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 120 YSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp HHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHHH
T ss_pred HHHhhcccccccccccccccCCCceEEEEECCCchHHHHHHHHHHh
Confidence 1 11 1 24566666677665544455554
No 331
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=95.06 E-value=0.05 Score=42.64 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=48.1
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..++
T Consensus 36 t~~~~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~-~~~DrR-~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 36 TPPDVHVLKLIDEQ---RGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRER-NPSDQR-SFQLFLTDEGLAIH 105 (142)
T ss_dssp CHHHHHHHHHHHHT---TTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC------------CCEECHHHHHHH
T ss_pred CHHHHHHHHHHHhC---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeecc-CCCCCC-eeeeEECHHHHHHH
Confidence 35677788888886 49999999999999 9999999999999999999741 111111 12366777666555
No 332
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=95.01 E-value=0.014 Score=42.78 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=43.7
Q ss_pred CCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 58 MSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 58 ~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
.+..+||..+++ +++.++..++.|...|++++. .+.|.+|+.+..++.
T Consensus 21 ~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~---------~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 21 SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE---------GKQYMLTKKGEELLE 68 (95)
T ss_dssp BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECHHHHHHHH
T ss_pred CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE---------CCeeEEChhHHHHHH
Confidence 899999999999 999999999999999999974 466999999997764
No 333
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=94.90 E-value=0.014 Score=41.32 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=39.1
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
..|++.|.+. ++.|..|||+.+++ ++.-+++.|+.|...|+|..
T Consensus 3 ~~Il~~L~~~---~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 3 NEILEFLNRH---NGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHS---CCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 3467777765 58999999999999 99999999999999999985
No 334
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=94.89 E-value=0.014 Score=50.84 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=49.3
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+.|++.|...+ +++|+.|||+.+|+ +..-+.|+|+.|+..|||+++. + ++.|++++....+.
T Consensus 9 l~iL~~l~~~~--~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~---~----~~~Y~lg~~~~~lg 70 (241)
T 2xrn_A 9 ASIMRALGSHP--HGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALG---P----AGGFRLGPALGQLI 70 (241)
T ss_dssp HHHHHHHHTCT--TCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECG---G----GCEEEECSHHHHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC---C----CCeEEECHHHHHHH
Confidence 45677777642 47999999999999 9999999999999999999741 1 37899987654443
No 335
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=94.83 E-value=0.023 Score=44.36 Aligned_cols=80 Identities=9% Similarity=0.066 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcccccccccccC
Q 017777 20 ANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLRNL 98 (366)
Q Consensus 20 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 98 (366)
++..+++++.+-|...+|.. |.. |+.+..||++.+ ++ ++..|.+.|+.|+..|+|++.. .+
T Consensus 15 pi~~~l~~lg~kW~l~IL~~---------L~~----g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~-~~ 76 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFYH---------MID----GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREV-YH 76 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHHH---------HTT----SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEE-EC
T ss_pred cHHHHHHHHcCcCHHHHHHH---------Hhc----CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEe-cC
Confidence 46677777777777665543 333 599999999999 99 9999999999999999999752 11
Q ss_pred CCCccccccccchhchhhhc
Q 017777 99 PDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 99 ~~g~~~~~y~~t~~~~~l~~ 118 (366)
.+.. .-.|.+|+.+..+..
T Consensus 77 ~d~r-~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 77 QVPP-KVEYSLTEFGRTLEP 95 (131)
T ss_dssp SSSC-EEEEEECTTGGGGHH
T ss_pred CCCC-eEEEEECHhHHHHHH
Confidence 1111 246899988886663
No 336
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=94.69 E-value=0.078 Score=42.62 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=52.7
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
..++.|+..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..++.
T Consensus 46 ~~q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~~ 115 (162)
T 3k0l_A 46 LPQFTALSVLAAK---PNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAP-DPTHGR-RILVTVTPSGLDKLN 115 (162)
T ss_dssp HHHHHHHHHHHHC---TTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEE-CCSSSC-CEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecC-CCCcCC-eeEeEECHhHHHHHH
Confidence 3455688888876 49999999999999 9999999999999999999752 112211 124777877775553
No 337
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=94.63 E-value=0.022 Score=44.47 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcccccccccccC
Q 017777 20 ANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLRNL 98 (366)
Q Consensus 20 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 98 (366)
....+++++.+.|... |+..|.. ++.+..||++.+ ++ ++..+.+.|+.|+..|+|++.. .+
T Consensus 24 ~~~~~l~~l~~~w~l~---------IL~~L~~----g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~-~~ 85 (131)
T 1yyv_A 24 PSREVLKHVTSRWGVL---------ILVALRD----GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVS-YP 85 (131)
T ss_dssp THHHHHHHHHSHHHHH---------HHHHGGG----CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEE-EC
T ss_pred CHHHHHHHHcCCcHHH---------HHHHHHc----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEe-cC
Confidence 3455556655555544 3444554 489999999999 79 9999999999999999999752 11
Q ss_pred CCCccccccccchhchhhh
Q 017777 99 PDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 99 ~~g~~~~~y~~t~~~~~l~ 117 (366)
.|+. .-.|.+|+.+..+.
T Consensus 86 ~d~r-~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 86 VVPP-HVEYSLTPLGEQVS 103 (131)
T ss_dssp SSSC-EEEEEECHHHHHHH
T ss_pred CCCC-eEEEEECccHHHHH
Confidence 2211 24699998887655
No 338
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=94.58 E-value=0.024 Score=42.88 Aligned_cols=80 Identities=15% Similarity=0.062 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhccccccccccc
Q 017777 19 EANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLRN 97 (366)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~ 97 (366)
-....+++++.+.|... |+..|.. ++.+..|||+.+ ++ ++..+.+.|+.|+..|+|++...
T Consensus 10 c~~~~~l~~l~~~~~~~---------IL~~L~~----~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~- 71 (112)
T 1z7u_A 10 TSINLALSTINGKWKLS---------LMDELFQ----GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESF- 71 (112)
T ss_dssp HHHHHHHHTTCSTTHHH---------HHHHHHH----SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEE-
T ss_pred CCHHHHHHHHcCccHHH---------HHHHHHh----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeec-
Confidence 34555566555555544 3444554 389999999999 99 99999999999999999987521
Q ss_pred CCCCccccccccchhchhhh
Q 017777 98 LPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 98 ~~~g~~~~~y~~t~~~~~l~ 117 (366)
+.|+. .-.|.+|+.+..+.
T Consensus 72 ~~d~r-~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 72 NELPP-RVEYTLTPEGYALY 90 (112)
T ss_dssp CCSSC-EEEEEECHHHHHHH
T ss_pred CCCCC-eEEEEECHhHHHHH
Confidence 12211 23588998877554
No 339
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=94.57 E-value=0.034 Score=44.10 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=39.3
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
+|.|.++||+.+++ ++..++++|..|...|+|... .|+ .+.|.+.+.
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~-----rG~-~GGy~Lar~ 73 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSV-----RGA-KGGYQLRVP 73 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC-----SSS-SSEEEESSC
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEec-----CCC-CCCeeecCC
Confidence 48999999999999 999999999999999999852 232 467887643
No 340
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=94.50 E-value=0.024 Score=49.52 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=47.6
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
+.|++.|...+ +++|+.|||+.+++ +..-+.|+|+.|+..|||+++ . ++.|++++...
T Consensus 11 l~iL~~l~~~~--~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~----~----~~~Y~lg~~~~ 68 (249)
T 1mkm_A 11 FEILDFIVKNP--GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK----K----DKRYVPGYKLI 68 (249)
T ss_dssp HHHHHHHHHCS--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC----T----TSCEEECTHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC----C----CCcEEECHHHH
Confidence 45677777642 47999999999999 999999999999999999963 1 47899887543
No 341
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=94.47 E-value=0.013 Score=51.64 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=49.0
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|||+++ ++.|++++....+.
T Consensus 17 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~---------~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQR--PNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS---------GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSC--SSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECGGGHHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC---------CCEEEEcHHHHHHH
Confidence 34566666432 58999999999999 999999999999999999963 47899988765554
No 342
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=94.44 E-value=0.11 Score=50.74 Aligned_cols=110 Identities=14% Similarity=0.031 Sum_probs=68.8
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-------------CCCeEEEecc-hhHHhhCCC------CCCceE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-------------PSIKGINFDL-PHVIQDAPA------FPGVEH 248 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~~~v~~ 248 (366)
..-+++.+. .....+|+|-.||+|.++....+.. ....++|+|+ +.+...++. .....+
T Consensus 206 v~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I 284 (530)
T 3ufb_A 206 VRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRI 284 (530)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEE
T ss_pred HHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccc
Confidence 344445444 4456799999999999988766542 1346889987 655555442 134567
Q ss_pred EEccCCC-CCC------CCCEEEecccccc-CC-------------hHHHHHHHHHHHHhCC-------CCcEEEEEcc
Q 017777 249 VGGDMFV-SVP------KGDAIFIKWICHD-WS-------------DEHCVKFLKNCYEALP-------VNGKVIVAES 299 (366)
Q Consensus 249 ~~~D~~~-~~~------~~D~i~~~~~lh~-~~-------------~~~~~~~L~~~~~~L~-------pgG~lli~e~ 299 (366)
..+|.+. +.. ..|+|+.+--+-. +. .+....++..+.+.|+ |||++.++-+
T Consensus 285 ~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 285 DPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp ECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred cccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 7788765 321 2399998755521 11 1112356777888886 7999888743
No 343
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=94.44 E-value=0.034 Score=44.63 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=48.6
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 53 ~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRE---DGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQR-DEKDRR-SYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CC---C-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec-CCCCCC-eeEEEECHHHHHHH
Confidence 4457777665 58999999999999 9999999999999999998752 112211 12467777776555
No 344
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=94.41 E-value=0.025 Score=41.56 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=50.3
Q ss_pred hhChHHHHhhcCCCCCCCHHHH----HhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDI----ASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~el----a~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.++..|... ++.|..+| |+.+++ ++..+.+.++.|+..|++++.. .+ . ...|.+|+.+..++
T Consensus 10 q~~iL~~l~~~---~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~---~~-r-~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 10 EAIVLAYLYDN---EGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQ---ER-G-EKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHHTTC---TTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEE---ET-T-EEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEe---cC-C-ceEEEECHHHHHHH
Confidence 45567777664 48999999 999999 9999999999999999998742 11 0 35678888777665
Q ss_pred c
Q 017777 118 K 118 (366)
Q Consensus 118 ~ 118 (366)
.
T Consensus 78 ~ 78 (99)
T 1tbx_A 78 I 78 (99)
T ss_dssp H
T ss_pred H
Confidence 3
No 345
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=94.40 E-value=0.027 Score=45.83 Aligned_cols=70 Identities=16% Similarity=0.089 Sum_probs=50.0
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.|+..|...+ ++.|..+||+.+++ +...+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..++
T Consensus 53 ~~q~~vL~~L~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 53 QTHWVTLHNIHQLP--PDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQT-CASDRR-AKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHHHSC--SSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeC-CCCCCC-eeEEEECHHHHHHH
Confidence 44667788887622 47999999999999 9999999999999999999741 111211 12466777666555
No 346
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=94.39 E-value=0.11 Score=41.18 Aligned_cols=67 Identities=10% Similarity=0.151 Sum_probs=47.2
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccccc-ccCCCCccccccccchhchhhh
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSL-RNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~-~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.++..| .. ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.. ..+.|+. .-.+.+|+.+..+.
T Consensus 40 q~~iL~~l-~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R-~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 40 QSHVLNML-SI---EALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQR-LKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHH-HH---SCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC------------CCBEECHHHHHHH
T ss_pred HHHHHHHH-Hc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCC-eeEEEECHhHHHHH
Confidence 44488888 54 59999999999999 9999999999999999999620 0122221 13466776666554
No 347
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=94.37 E-value=0.012 Score=43.54 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=45.5
Q ss_pred HHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 37 LKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 37 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
+.--.++.|+..|... ++.++.|||+.+|+ ++..+.+.|+.|... ++... .+|+ .-.|++++.
T Consensus 24 L~~~~Rl~IL~~l~~~---~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~----~~gr-~~~y~l~~~ 86 (99)
T 2zkz_A 24 MAHPMRLKIVNELYKH---KALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRN----RQGL-EIYYSINNP 86 (99)
T ss_dssp HCSHHHHHHHHHHHHH---SCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEE----EETT-EEEEECCCH
T ss_pred hCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhhe----EeCc-EEEEEEChH
Confidence 3344556677444433 48999999999999 999999999999999 99853 2332 245666643
No 348
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=94.33 E-value=0.068 Score=47.30 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=58.4
Q ss_pred CCCCCeEEEEeC------CccHHHHHHHHhCCC-CeEEEecchhHHhhCCCCCCceEEEccCCCC-CCC-CCEEEecccc
Q 017777 199 FEGLNSVVDVGG------GIGATLNMIISKYPS-IKGINFDLPHVIQDAPAFPGVEHVGGDMFVS-VPK-GDAIFIKWIC 269 (366)
Q Consensus 199 ~~~~~~vLDvG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~-~~~-~D~i~~~~~l 269 (366)
.+.+.+|||+|+ ..|.. .+.+..|. ..++.+|+.++...+ . .++.+|..+. ... .|+|++-..-
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCC
Confidence 346789999996 67774 33444676 689999985544211 2 4588887652 222 2888773221
Q ss_pred c---cC------ChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 270 H---DW------SDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 270 h---~~------~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
. +- ...-+..+|.=+.+.|+|||.+++-
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 1 00 1112457788889999999999985
No 349
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=94.30 E-value=0.046 Score=42.67 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=53.7
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++.+.. .+.|+. .-.|.+|+.+..+.
T Consensus 31 ~~~~~iL~~l~~~---~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~-~~~d~r-~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 31 LTRYSILQTLLKD---APLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKR-NPDNQR-EVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSSTT-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence 3456688888875 48999999999999 9999999999999999998752 112221 23588888888666
No 350
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=94.24 E-value=0.0078 Score=53.10 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=48.6
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFL 116 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l 116 (366)
+.|++.|...+ +++|+.|||+.+|+ +..-+.|+|+.|+..|||+++ .+ .+.|++++....+
T Consensus 9 l~IL~~l~~~~--~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~----~~---~~~Y~lG~~~~~l 69 (260)
T 3r4k_A 9 LTLLTYFNHGR--LEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQV----EG---ARSYRLGPQVLRL 69 (260)
T ss_dssp HHHHTTCBTTB--SEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEC----SS---SSEEEECTTHHHH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc----CC---CCcEEcCHHHHHH
Confidence 44677776532 58999999999999 999999999999999999974 11 3789998765433
No 351
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=94.21 E-value=0.051 Score=43.93 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=38.9
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
+|.|+++||+.+++ ++..++++|..|...|+|... .|+ .|.|.+++
T Consensus 43 ~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~-----rG~-~GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSI-----RGA-HGGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----CST-TCEEEECS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEe-----cCC-CCceEecC
Confidence 58999999999999 999999999999999999853 232 46687763
No 352
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=94.17 E-value=0.049 Score=43.29 Aligned_cols=69 Identities=13% Similarity=0.162 Sum_probs=51.3
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+..
T Consensus 48 ~~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 48 PQYLVMLVLWET---DERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTR-AASDER-QVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC---------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHHhC---CCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecC-CcccCC-eeEeeECHHHHHHHH
Confidence 456678888775 48999999999999 9999999999999999999741 111111 125778888876654
No 353
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=94.10 E-value=0.11 Score=41.60 Aligned_cols=68 Identities=13% Similarity=0.183 Sum_probs=49.1
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. ...+.+|+.+..+.
T Consensus 50 ~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 50 PEWRVITILALY---PGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRET-HGDDRR-RSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHHS---TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-----------CCCEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeec-CCCCCC-eeEEEECHHHHHHH
Confidence 356678888775 59999999999999 9999999999999999998741 111211 13467777766555
No 354
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=94.10 E-value=0.012 Score=51.94 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=46.8
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
+.|++.|...+ +++|+.|||+.+|+ +..-+.|+|+.|+..|||+++ ++.|++++...
T Consensus 24 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~~---------~~~Y~Lg~~~~ 80 (265)
T 2ia2_A 24 LAVIRCFDHRN--QRRTLSDVARATDL----TRATARRFLLTLVELGYVATD---------GSAFWLTPRVL 80 (265)
T ss_dssp HHHHHTCCSSC--SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEES---------SSEEEECGGGG
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec---------CCEEEEcHHHH
Confidence 44666676432 48999999999999 999999999999999999963 47899987654
No 355
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=94.06 E-value=0.032 Score=43.91 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=43.3
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.|..+||+.+++ ++..+.+.|+.|+..|+|.+. . ...|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~----~----~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE----K----YRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE----T----TTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe----e----CceEEEchhHHHHH
Confidence 48999999999999 999999999999999999973 1 36788998877555
No 356
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=94.04 E-value=0.12 Score=40.94 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=49.6
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 44 ~~~~iL~~l~~~---~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 44 PEWRVLACLVDN---DAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVA-DAKDKR-RVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHHSSC---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC--------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc-CCCcCC-eeEeEECHHHHHHH
Confidence 455677777765 58999999999999 9999999999999999998741 011211 13467777776555
No 357
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=93.89 E-value=0.13 Score=41.54 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=51.7
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 45 ~~~~~iL~~L~~~---~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 45 IPQFRTLVILSNH---GPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLP-HPTSRR-ELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHHHH---CSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCSS-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHHHHHHH
Confidence 3456678888775 48999999999999 9999999999999999998742 112211 12367777776554
No 358
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=93.83 E-value=0.045 Score=42.53 Aligned_cols=69 Identities=12% Similarity=0.164 Sum_probs=51.3
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.. .+.|+. .-.+.+|+.+..+.
T Consensus 33 ~~~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~-~~~d~r-~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 33 YVQFGVIQVLAKS---GKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEK-NPNDQR-ETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHHHS---CSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeecc-CCCCCc-eeEEEECHHHHHHH
Confidence 3456678888775 48999999999999 9999999999999999998742 112211 12367777766554
No 359
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.83 E-value=0.051 Score=42.76 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=51.5
Q ss_pred HHHhhChHHHHhh-cCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 39 SAIELDLLEIIAK-AGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 39 ~a~~lglf~~L~~-~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+..++.++..|.. . ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 34 ~~~~~~iL~~l~~~~---~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 34 QFSQLVVLGAIDRLG---GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHA-DPQDGR-RTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHHHTT---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC--------CCEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCC-CCCCCC-ceeeEECHHHHHHH
Confidence 3456778888886 5 59999999999999 9999999999999999998741 111211 12367777776555
No 360
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=93.77 E-value=0.034 Score=43.92 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=50.2
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. ...+.+|+.+..+.
T Consensus 40 ~~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 40 MTEWRIISVLSSA---SDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNG-HSEDKR-TYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHHS---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeec-CCCCcc-eeEeEECHhHHHHH
Confidence 4566788888876 49999999999999 9999999999999999999741 112211 23467777666555
No 361
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=93.70 E-value=0.032 Score=48.61 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=52.6
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
.++.|+..|... ++.|..|||+.+++ ++.-+.|.|+.|...|++++. ++ ...|.+|+.+..+..
T Consensus 153 ~~~~IL~~L~~~---~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~---~r----~~~~~LT~~G~~l~~ 216 (244)
T 2wte_A 153 EEMKLLNVLYET---KGTGITELAKMLDK----SEKTLINKIAELKKFGILTQK---GK----DRKVELNELGLNVIK 216 (244)
T ss_dssp HHHHHHHHHHHH---TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---TT----TTEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe---CC----ccEEEECHHHHHHHH
Confidence 456677777665 48999999999999 999999999999999999973 11 467999998886653
No 362
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=93.61 E-value=0.04 Score=43.40 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=52.6
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 31 ~~q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 31 YNLFAVLYTLATE---GSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQE-GEQDRR-KRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECC-CSSCGG-GSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecc-CCCCCc-eeeeeEChhHHHHH
Confidence 3567788888776 48999999999999 9999999999999999999741 112211 13477887777655
No 363
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=93.60 E-value=0.083 Score=42.76 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=48.7
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
..++.++..|...+ +++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..++.
T Consensus 46 ~~q~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~~ 117 (168)
T 3u2r_A 46 AQQYNTLRLLRSVH-PEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTR-KPENRR-VVEVALTDAGLKLLK 117 (168)
T ss_dssp HHHHHHHHHHHHHT-TSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecC-CCCCCC-eeEeEECHHHHHHHH
Confidence 34566777777631 148999999999999 9999999999999999999742 111110 124677777775553
No 364
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=93.59 E-value=0.14 Score=40.98 Aligned_cols=68 Identities=16% Similarity=0.094 Sum_probs=50.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 54 ~q~~vL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~-~~~DrR-~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 54 PKLRLLSSLSAY---GELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSI-SDADQR-KRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC----CCC-SCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeC-CcccCC-eeEeeECHHHHHHH
Confidence 455678888775 48999999999999 9999999999999999999741 112211 13467777776555
No 365
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=93.57 E-value=0.016 Score=48.13 Aligned_cols=74 Identities=24% Similarity=0.360 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCC-CCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 33 LPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLP-TKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 33 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
.+.+|.--.++.|+..|.+ +|.|+.+||+.++ + +...+.+.|+.|...|+|+...+....|.....|++++
T Consensus 16 ~~~~La~P~Rl~il~~L~~----~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~ 87 (182)
T 4g6q_A 16 LVDLLHHPLRWRITQLLIG----RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNT 87 (182)
T ss_dssp HHHHTTSHHHHHHHHHTTT----SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECT
T ss_pred HHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEecc
Confidence 3455566678889999987 5999999999996 8 88999999999999999986422111122234677776
Q ss_pred hch
Q 017777 112 VCK 114 (366)
Q Consensus 112 ~~~ 114 (366)
...
T Consensus 88 ~~~ 90 (182)
T 4g6q_A 88 QAG 90 (182)
T ss_dssp TTT
T ss_pred ccc
Confidence 544
No 366
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=93.53 E-value=0.15 Score=40.19 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=43.0
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|...+ +++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 42 ~q~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~-~~~DrR-~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 42 QQGRMIGYIYENQ-ESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRI-PENNAR-QKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHHT-TTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC----------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeC-CCCCch-hheeeECHHHHHHH
Confidence 3456777777641 148999999999999 9999999999999999999741 111211 12466777766555
No 367
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=93.53 E-value=0.067 Score=47.96 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=38.6
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA 242 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 242 (366)
.+..++..+. .....|||++||+|..+..++.. +.+++++|+ +.+++.+++
T Consensus 224 l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 224 LAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 4555666553 35679999999999999988774 468999998 777776653
No 368
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=93.47 E-value=0.02 Score=50.38 Aligned_cols=58 Identities=26% Similarity=0.357 Sum_probs=45.7
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
+.|++.|...+ +++|+.|||+.+|+ +..-+.|+|+.|+..|||.++ . ++.|++++...
T Consensus 26 l~iL~~l~~~~--~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~----~----~~~Y~lg~~~~ 83 (260)
T 2o0y_A 26 IDLLELFDAAH--PTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSR----A----DGSYSLGPEML 83 (260)
T ss_dssp HHHHTTCBTTB--SSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEC----T----TSCEEECHHHH
T ss_pred HHHHHHHhhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC----C----CCeEEecHHHH
Confidence 34556665321 48999999999999 999999999999999999974 1 23899987544
No 369
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=93.46 E-value=0.044 Score=43.65 Aligned_cols=76 Identities=13% Similarity=0.109 Sum_probs=54.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCC
Q 017777 22 LLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDG 101 (366)
Q Consensus 22 ~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g 101 (366)
+..++++...|...+|. .|.. ++.+..||++.+++ ++..+.+.|+.|+..|+|++.. .+.++
T Consensus 15 ~~~l~~l~~~w~l~IL~---------~L~~----g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~-~~~d~ 76 (146)
T 2f2e_A 15 ARPLDVIGDGWSMLIVR---------DAFE----GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVP-AESGS 76 (146)
T ss_dssp TTTHHHHCSSSHHHHHH---------HHHT----TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEE-CSSSS
T ss_pred HHHHHHhCCchHHHHHH---------HHHh----CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEe-cCCCC
Confidence 34566666666554443 3434 48999999999999 9999999999999999999752 11111
Q ss_pred ccccccccchhchhhh
Q 017777 102 KVERLYGLAPVCKFLT 117 (366)
Q Consensus 102 ~~~~~y~~t~~~~~l~ 117 (366)
.-.|.+|+.+..+.
T Consensus 77 --~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 77 --HQEYRLTDKGRALF 90 (146)
T ss_dssp --CEEEEECHHHHTTH
T ss_pred --eEEEEECchHHHHH
Confidence 24788888776544
No 370
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=93.34 E-value=0.078 Score=42.99 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=40.0
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
.+.|.++||+.+++ ++..++++|..|...|+|+-. .|+ .+.|++.+..
T Consensus 27 ~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~-----rG~-~GGy~Lar~p 74 (162)
T 3k69_A 27 SKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGT-----VGK-NGGYQLDLAL 74 (162)
T ss_dssp SCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEE-----CST-TCEEECCSCG
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee-----cCC-CCCeEecCCh
Confidence 48999999999999 999999999999999999753 232 4678887543
No 371
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=93.34 E-value=0.032 Score=43.87 Aligned_cols=69 Identities=20% Similarity=0.192 Sum_probs=51.3
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 37 PEQWSVLEGIEAN---EPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREI-STEDRR-ISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHHHH---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-----CC-SCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccC-CCccCc-eeeeeECHHHHHHH
Confidence 4566678888775 49999999999999 9999999999999999999741 112211 13467777776555
No 372
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=93.20 E-value=0.068 Score=41.92 Aligned_cols=68 Identities=7% Similarity=0.014 Sum_probs=50.1
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|. . ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~-~---~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~-~~~d~r-~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 37 YLDFLVLRATS-D---GPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVR-DREDRR-KILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHHT-T---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHh-c---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeec-CCCCCc-eEEEEECHHHHHHH
Confidence 34566777777 4 59999999999999 9999999999999999998742 111211 12467777666554
No 373
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=93.14 E-value=0.039 Score=42.49 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=41.4
Q ss_pred HhhChHHHHhhcCCCCC-CCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAF-MSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~-~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.+..|+..|...+ +| +|+.|||+.+++ +..-+.|.|+.|+..|+|.+.
T Consensus 27 ~e~~il~~L~~~~--~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 27 ADLNVMKSFLNEP--DRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHST--TCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCC--CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 4566788887653 45 899999999999 999999999999999999874
No 374
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=93.03 E-value=0.069 Score=41.42 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=32.0
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..|..+||+.+++ ++.-+.+.++.|+..|+|.+.
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 4799999999999 999999999999999999974
No 375
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=93.02 E-value=0.16 Score=38.45 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=51.4
Q ss_pred cCCCCCccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccc
Q 017777 10 ISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYS 89 (366)
Q Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g 89 (366)
-||...-+...+..+..++. ++....++.||..|.+ ++.++.+||+.+++ ++..+.+.|+.|...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~il~~L~~----~~~s~~ela~~l~i----s~stvsr~l~~Le~~G 73 (119)
T 2lkp_A 8 NRPSAPLDSQAAAQVASTLQ------ALATPSRLMILTQLRN----GPLPVTDLAEAIGM----EQSAVSHQLRVLRNLG 73 (119)
T ss_dssp CCCCSCCHHHHHHHHHHHHH------HHCCHHHHHHHHHHHH----CCCCHHHHHHHHSS----CHHHHHHHHHHHHHHC
T ss_pred CccccccCHHHHHHHHHHHH------HhCCHHHHHHHHHHHH----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCC
Confidence 34444444444444333332 3333557778888887 38999999999999 9999999999999999
Q ss_pred ccccc
Q 017777 90 VLNCS 94 (366)
Q Consensus 90 ~l~~~ 94 (366)
++...
T Consensus 74 lv~~~ 78 (119)
T 2lkp_A 74 LVVGD 78 (119)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99863
No 376
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=93.02 E-value=0.072 Score=42.41 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=52.0
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 44 ~~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 44 TTELYAFLYVALF---GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREM-DPVDRR-TYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEE-CTTTSS-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeC-CCCCcc-eeEEEECHHHHHHH
Confidence 4567788888876 48999999999999 9999999999999999998742 112211 12466777766554
No 377
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=92.97 E-value=0.092 Score=41.96 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=48.4
Q ss_pred HhhChHHHHh-hcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIA-KAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~-~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|. .. ++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 48 ~~~~iL~~L~~~~---~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 48 AKFDAMAQLARNP---DGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAM-SADDRR-SFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHHCT---TCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC----------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeec-CCCCCC-eEEEEEChhHHHHH
Confidence 3566888884 43 58999999999999 9999999999999999999741 111111 12366777666554
No 378
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=92.94 E-value=0.055 Score=42.84 Aligned_cols=70 Identities=10% Similarity=0.152 Sum_probs=48.9
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|...+ +++|..+||+.+++ ++..+.++++-|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 39 ~~q~~vL~~l~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 39 VRSYSVLVLACEQA--EGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTL-DPSDRR-NKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHHST--TCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-------------CEECHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeC-Cccccc-hheeeECHHHHHHH
Confidence 45666777786543 47899999999999 9999999999999999999741 111110 12367777776555
No 379
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=92.93 E-value=0.2 Score=39.36 Aligned_cols=68 Identities=6% Similarity=0.036 Sum_probs=50.2
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.. .+.|+. .-.+.+|+.+..+.
T Consensus 43 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 43 PQFVALQWLLEE---GDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVR-DEHDRR-VVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CCC----CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecC-CCCCcc-eeEeEECHhHHHHH
Confidence 355677788775 48999999999999 9999999999999999998742 112211 12467777766554
No 380
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=92.88 E-value=0.06 Score=41.86 Aligned_cols=68 Identities=21% Similarity=0.185 Sum_probs=50.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 35 ~~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~-~~~d~R-~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 35 AQFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP-NPNDKR-GVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CTTCSS-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecC-CcccCc-eeEeEEChhHHHHH
Confidence 455677777765 48999999999999 9999999999999999998742 112211 12467777776555
No 381
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=92.82 E-value=0.065 Score=39.00 Aligned_cols=63 Identities=13% Similarity=0.006 Sum_probs=46.5
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcch-HHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTV-LDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~-l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++..|...+ .+.|..|||+.+++ ++.. +.+.++.|+..|+|..+ +.|+. .-.+.+|+.+..+.
T Consensus 20 ~L~~l~~~~--~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~---~~drR-~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 20 TLLEFEKKG--YEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEE---TLSYR-VKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHHTT--CCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEE---EEETT-EEEEEECHHHHHHH
T ss_pred HHHHHHhcC--CCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecC---CCCCC-eEEEEECHhHHHHH
Confidence 455555541 27999999999999 9999 99999999999999843 12211 23467787776555
No 382
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=92.73 E-value=0.063 Score=41.73 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=51.5
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 38 ~~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 38 PTQWAALVRLGET---GPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSA-DPDDGR-RLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHHH---SSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEE-ETTEEE-EEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeC-CCCCCC-eeeeEECHhHHHHH
Confidence 3467788888775 48999999999999 9999999999999999998741 011110 12477777766554
No 383
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=92.70 E-value=0.056 Score=39.98 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=41.6
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..++.|+..|... ++.|..+||+.+++ ++..+.+.|+.|...|+|...
T Consensus 20 ~~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 20 PSDVRIYSLLLER---GGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 3456677777665 48999999999999 999999999999999999974
No 384
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=92.70 E-value=0.066 Score=45.12 Aligned_cols=73 Identities=15% Similarity=0.266 Sum_probs=52.8
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
+.+|....++.|+..|.. +|.++.+||+.+++ ++..+.+.|+.|...|+|.........|...-.|.+++..
T Consensus 9 lkaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~ 80 (202)
T 2p4w_A 9 LDVLGNETRRRILFLLTK----RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL 80 (202)
T ss_dssp HHHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHH
Confidence 445556667777888866 59999999999999 9999999999999999998742100011113457777654
Q ss_pred h
Q 017777 114 K 114 (366)
Q Consensus 114 ~ 114 (366)
.
T Consensus 81 ~ 81 (202)
T 2p4w_A 81 R 81 (202)
T ss_dssp E
T ss_pred H
Confidence 3
No 385
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=92.63 E-value=0.088 Score=41.30 Aligned_cols=68 Identities=13% Similarity=0.308 Sum_probs=48.3
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.|+..|... +.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 38 ~~~~~iL~~l~~~----~~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~-~~~d~R-~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 38 NTQEHILMLLSEE----SLTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSK-DSKDAR-VIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHHTTC----CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC------------CCEECGGGHHHH
T ss_pred HHHHHHHHHHHhC----CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEecc-CCCCCc-eeEEEECHhHHHHH
Confidence 4566778888774 4999999999999 9999999999999999998741 111221 23567776666544
No 386
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=92.62 E-value=0.058 Score=42.20 Aligned_cols=69 Identities=12% Similarity=0.167 Sum_probs=51.6
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~-~~~d~R-~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 37 YPQFLVLTILWDE---SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRER-SEVDQR-EVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHHHS---SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEE-CSSSTT-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeec-CCCCcc-eEEEEEChHHHHHH
Confidence 4466778888775 48999999999999 9999999999999999998742 111211 13567777776554
No 387
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=92.60 E-value=0.067 Score=41.83 Aligned_cols=49 Identities=12% Similarity=-0.070 Sum_probs=41.9
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.|..+||+.+++ ++..+.+.++.|+..|+|++. ...|.+|+.+..+.
T Consensus 30 ~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~---------~~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 30 EGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK---------EDGVWITNNGTRSI 78 (139)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec---------CCeEEEChhHHHHH
Confidence 58999999999999 999999999999999999963 25678887766543
No 388
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=92.60 E-value=0.056 Score=41.72 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=50.1
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... .+++.|..+||+.+++ ++..+.++++-|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 38 ~q~~vL~~l~~~-~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 38 EEFAVLTYISEN-KEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKR-NEHDER-TVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHHHT-CCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBC-CSSSSC-CCEEECCSHHHHHH
T ss_pred HHHHHHHHHHhc-cCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence 355577777664 1148999999999999 9999999999999999999741 112211 12466777766555
No 389
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=92.55 E-value=0.077 Score=38.80 Aligned_cols=54 Identities=24% Similarity=0.220 Sum_probs=43.8
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.+..+||+.+++ +...+.|.|..|...|+|+... ..|| .+...+|+.++.++
T Consensus 35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~--~~D~--R~~v~LT~~G~~~l 88 (96)
T 2obp_A 35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSV--EADG--RGHASLTQEGAALA 88 (96)
T ss_dssp CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE--CTTS--CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeec--CCCC--ceeEEECHHHHHHH
Confidence 58899999999999 9999999999999999999753 2344 34567777776544
No 390
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=92.46 E-value=0.074 Score=41.65 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=48.4
Q ss_pred HhhChHHHH-hhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEII-AKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L-~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..| ... ++.|..+||+.+++ ++..+.+.++-|+..|+|.+.. .+.|+. .-.+.+|+.+..+.
T Consensus 38 ~~~~iL~~l~~~~---~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 38 ARWLVLLHLARHR---DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLA-VAEDRR-AKHIVLTPKADVLI 106 (146)
T ss_dssp THHHHHHHHHHCS---SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-CBTTBC-SCEEEECTTHHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecC-CCcccC-eeeeEECHhHHHHH
Confidence 345577777 543 58999999999999 9999999999999999998741 111111 12356666555444
No 391
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=92.44 E-value=0.031 Score=43.83 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=49.2
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 37 ~q~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 37 TGYIVLMAIEND---EKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTR-EEKDER-NLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHHSCTT---CEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC---------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecC-CCCCcc-eeeeeEChHHHHHH
Confidence 445566667654 59999999999999 9999999999999999999742 112211 13577787777655
No 392
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=92.37 E-value=0.073 Score=41.84 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=52.9
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+..
T Consensus 40 ~~~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~-~~~d~R-~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 40 YPQYLALLLLWEH---ETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKR-SEEDER-SVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHHHH---SEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCB-CSSCTT-SBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHhHHHHHH
Confidence 4566778888775 48999999999999 9999999999999999998742 111211 234778888776664
No 393
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=92.33 E-value=0.06 Score=38.07 Aligned_cols=50 Identities=16% Similarity=0.317 Sum_probs=41.4
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcccccccc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQL-----PTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
--+..|++.|.+.+ +++.|++||++.+ ++ +..-+.|.|+.|+..|+|.+.
T Consensus 17 ~~r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 17 LPRLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEE
Confidence 34566888887630 0389999999999 88 999999999999999999874
No 394
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=92.32 E-value=0.061 Score=41.90 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=51.1
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|...+ +++.|..+||+.+++ ++..+.+.++-|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 31 ~~~~~vL~~l~~~~-~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~-~~~D~R-~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 31 NEQGHTLGYLYAHQ-QDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYV-DAQDTR-RKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHHHST-TTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CCC--C-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecC-CCCCCC-eeeeEECHHHHHHH
Confidence 34566777777641 138999999999999 9999999999999999999752 122221 13466777776555
No 395
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=92.24 E-value=0.072 Score=42.14 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=50.4
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 41 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 41 GQRAILEGLSLT---PGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRT-NPEHAR-SHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-CSSSTT-SCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecC-Cccccc-ceeeEEChhhHHHH
Confidence 355678888775 48999999999999 9999999999999999999741 111211 12466777666544
No 396
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=92.21 E-value=0.049 Score=43.20 Aligned_cols=69 Identities=10% Similarity=0.058 Sum_probs=49.5
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 41 ~~q~~iL~~l~~~---~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 41 YSQYLVMLTLWEE---NPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRER-QQSDKR-QLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHHS---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC-----------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCC-CCCCcc-eeeeeECHHHHHHH
Confidence 4566778888775 59999999999999 9999999999999999999741 111211 12466776666544
No 397
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=92.14 E-value=0.073 Score=41.30 Aligned_cols=69 Identities=10% Similarity=0.121 Sum_probs=50.4
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++... +.|+. .-.+.+|+.+..+.
T Consensus 29 ~~~~~iL~~l~~~---~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~-~~d~R-~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 29 DAQVACLLRIHRE---PGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQD-PENRR-RYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHHHS---TTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEE-TTEEE-EEEEEECHHHHHTH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecC-CCCce-eEEeeECHhHHHHH
Confidence 3456677788775 58999999999999 99999999999999999997410 11110 12366777666544
No 398
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=92.13 E-value=0.074 Score=42.22 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=51.0
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc--ccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC--SLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~--~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++ .. .+.|+. .-.+.+|+.+..+.
T Consensus 42 ~~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~-~~~d~R-~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 42 QQLAMINVIYST---PGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKT-IPNDSM-DLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC---CTTCT-TCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcC-CCCCCc-eeEeEECHHHHHHH
Confidence 456677888775 48999999999999 99999999999999999997 41 112211 12577887776555
No 399
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=92.01 E-value=0.1 Score=40.57 Aligned_cols=70 Identities=10% Similarity=0.223 Sum_probs=49.6
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|...+ ..+.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. ...+.+|+.+..+.
T Consensus 35 ~~~~iL~~l~~~~-~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 35 TQMTIIDYLSRNK-NKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKV-SGKDSR-QKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHHTT-TSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-SEEEEECHHHHTTH
T ss_pred HHHHHHHHHHHCC-CCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeC-CCcCCC-eeeeEECHHHHHHH
Confidence 3555677777752 127999999999999 9999999999999999998742 111211 12466776665444
No 400
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=91.96 E-value=0.07 Score=42.82 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=51.3
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.|+..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 52 ~~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 52 TAKMRALAILSAK---DGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREV-DSDDQR-SSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-C--CCS-SEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence 4466788888875 58999999999999 9999999999999999998741 111211 23467777666544
No 401
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=91.89 E-value=0.053 Score=42.32 Aligned_cols=69 Identities=12% Similarity=0.078 Sum_probs=51.4
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 36 ~~~~~iL~~l~~~---~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 36 EQQWRVIRILRQQ---GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWK-APKDQR-RVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHHH---CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeec-CCCCCC-eeEEEECHHHHHHH
Confidence 4466778888775 48999999999999 9999999999999999998742 111110 12367777776555
No 402
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=91.77 E-value=0.083 Score=41.33 Aligned_cols=68 Identities=12% Similarity=0.022 Sum_probs=50.2
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.. .+.|+. .-.+.+|+.+..+.
T Consensus 30 ~~~~iL~~l~~~---~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~-~~~d~R-~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 30 GQYLYLVRVCEN---PGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQE-DASNKK-IKRIYATEKGKNVY 97 (144)
T ss_dssp THHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---cCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeec-CCCCCc-eeeeEEChhHHHHH
Confidence 345577777775 48999999999999 9999999999999999998742 111211 12367777766554
No 403
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=91.74 E-value=0.12 Score=41.22 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=44.7
Q ss_pred HHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 47 EIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 47 ~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..|... ++.|..+||+.+++ ++..+++.|+.|+..|+|+.. . +..+.+|+.+..+.
T Consensus 47 ~~l~~~---~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~-----~---~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 47 DLIREV---GEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMI-----P---WRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHH---SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE-----T---TTEEEECHHHHHHH
T ss_pred HHHHhC---CCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEe-----c---CCceEEChhHHHHH
Confidence 355554 48999999999999 999999999999999999863 1 35577887776544
No 404
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=91.70 E-value=0.073 Score=42.47 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=44.3
Q ss_pred HHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 35 MVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 35 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
.+|++.+.+... .. ++.|+++||+.+++ ++..++++|..|...|+|+.. .| .+.|.+.+.
T Consensus 15 yAl~~L~~La~~---~~----~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~-----rG--~GGy~L~~~ 74 (149)
T 1ylf_A 15 IAVHILSILKNN---PS----SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVN-----RG--PGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHHHS---CG----GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CCEEESSC
T ss_pred HHHHHHHHHHhC---CC----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEc-----cC--CCceEeCCC
Confidence 455555555431 12 48999999999999 999999999999999999852 23 466777754
No 405
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=91.55 E-value=0.15 Score=37.04 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=49.4
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHh-hCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIAS-QLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~-~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
++.|+-.|... ++.|+.+||+ .+++ +...+.|-++.|...|+|+.+ . +| ..+|+.+..++.
T Consensus 18 QfsiL~~L~~~---~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~----~----~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 18 TATILITIAKK---DFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKS----G----DG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHS---TTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEE----T----TE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecC----C----CC-eeeCHhHHHHHH
Confidence 45566667776 4999999999 9999 999999999999999999832 1 34 888888876664
No 406
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=91.54 E-value=0.088 Score=41.20 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=51.5
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 33 ~~~~~iL~~l~~~---~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~-~~~d~r-~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 33 PAQFDILQKIYFE---GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTP-DPADRR-AYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecC-CCCCCc-eEEEEECHHHHHHH
Confidence 3466778888775 48999999999999 9999999999999999999741 011110 12477777776555
No 407
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=91.44 E-value=0.1 Score=39.00 Aligned_cols=47 Identities=26% Similarity=0.351 Sum_probs=38.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.++.|+..+...+ .+.|..+||+.+|+ +..-+++.|+.|...|+|+.
T Consensus 19 ~~l~Il~~l~~~g--~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~ 65 (110)
T 1q1h_A 19 DVIDVLRILLDKG--TEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSY 65 (110)
T ss_dssp TTHHHHHHHHHHC--SCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 3455666664331 27899999999999 99999999999999999986
No 408
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=91.38 E-value=0.12 Score=41.09 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=41.3
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|+..|.+. ++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 4 ~~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 4 IDLRILKILQYN---AKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHTTC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence 456788888875 58999999999999 99999999999999999985
No 409
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=91.25 E-value=0.16 Score=40.48 Aligned_cols=69 Identities=14% Similarity=0.077 Sum_probs=49.2
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|...+ .+.+..+||+.+++ ++..+.++++-|+..|+|++.. .+.|+. .-...+|+.+..+.
T Consensus 32 ~q~~vL~~L~~~~--~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~-~~~DrR-~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 32 THWVTLYNINRLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHT-SANDRR-AKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHHHHSC--TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECGGGHHHH
T ss_pred HHHHHHHHHHHcC--CCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeec-CCCCCc-chhhhcCHHHHHHH
Confidence 3455666776542 36788999999999 9999999999999999998752 122211 12467777776555
No 410
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=91.06 E-value=0.13 Score=40.82 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=40.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|+..|... ++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 8 ~~~~iL~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 8 IDRILVRELAAD---GRATLSELATRAGL----SVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 355678888775 58999999999999 99999999999999999975
No 411
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=91.00 E-value=0.14 Score=40.39 Aligned_cols=46 Identities=17% Similarity=0.406 Sum_probs=40.9
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|++.|.+. ++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 6 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 6 IDLNIIEELKKD---SRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHHC---SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 345678888875 58999999999999 99999999999999999985
No 412
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=90.95 E-value=0.45 Score=37.48 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=49.5
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.|+..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 39 ~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKH---GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTH-NTKDRR-VIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-SEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecC-CCCCCc-eEEEEECHHHHHHH
Confidence 45577888765 48999999999999 9999999999999999998742 111211 12466776666544
No 413
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=90.58 E-value=0.17 Score=42.23 Aligned_cols=53 Identities=9% Similarity=0.141 Sum_probs=45.4
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+.++....+..|+..|.+ ++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 14 ~k~l~d~~~~~IL~~L~~----~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 14 IKVMLEDTRRKILKLLRN----KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHSHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 344455667788999985 59999999999999 999999999999999999864
No 414
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=90.55 E-value=0.15 Score=40.53 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=40.9
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|+..|.+. ++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 8 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 8 IDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 355678888875 59999999999999 99999999999999999985
No 415
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=90.32 E-value=0.17 Score=40.80 Aligned_cols=46 Identities=9% Similarity=0.260 Sum_probs=40.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|+..|.+. ++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 11 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 11 TDIKILQVLQEN---GRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEee
Confidence 345678888875 58999999999999 99999999999999999985
No 416
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=90.22 E-value=0.42 Score=37.22 Aligned_cols=68 Identities=9% Similarity=0.121 Sum_probs=50.9
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|...+ + |..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~~---~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 37 YLDFSILKATSEEP---R-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIR-DSKDRR-IVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHHSC---E-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCC---C-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecc-CCCCCc-eEEEEECHHHHHHH
Confidence 34567888888753 5 99999999999 9999999999999999999742 111100 11478888777555
No 417
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=90.22 E-value=0.14 Score=42.39 Aligned_cols=73 Identities=11% Similarity=0.082 Sum_probs=54.1
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
+..++.++..|...+ .++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..++.
T Consensus 40 t~~q~~vL~~L~~~~-~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 40 TSRQYMTILSILHLP-EEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIP-SPHDKR-AINVKVTDLGKKVMV 112 (189)
T ss_dssp CHHHHHHHHHHHHSC-GGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCSS-CEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHHHHHHHH
Confidence 456677888887521 158999999999999 9999999999999999999752 122211 135788888876553
No 418
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=90.21 E-value=0.21 Score=39.71 Aligned_cols=46 Identities=15% Similarity=0.372 Sum_probs=41.0
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|+..|.+. ++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 10 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 10 VDMQLVKILSEN---SRLTYRELADILNT----TRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 455688888875 59999999999999 99999999999999999985
No 419
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=89.97 E-value=0.18 Score=40.64 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=41.5
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|++.|.+. +++|..+||+++|+ ++..+++-++.|...|++..
T Consensus 4 ~d~~il~~L~~~---~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQED---STLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTC---SCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 456788899875 69999999999999 99999999999999999984
No 420
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=89.87 E-value=0.19 Score=39.34 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=39.8
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+..|+..|... ++.+..|||+.+|+ ++..+.+.|+.|...|++..
T Consensus 6 ~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 6 DKIILEILEKD---ARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEec
Confidence 45677788765 58999999999999 99999999999999999985
No 421
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=89.86 E-value=0.33 Score=38.39 Aligned_cols=45 Identities=24% Similarity=0.220 Sum_probs=37.7
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
+ |+++||+.+++ ++..++++|..|...|+|... -| .+.|.+.+..
T Consensus 24 ~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~-----rG--~GGy~Lar~p 68 (145)
T 1xd7_A 24 T-SSEIIADSVNT----NPVVVRRMISLLKKADILTSR-----AG--VPGASLKKDP 68 (145)
T ss_dssp C-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC-----SS--SSSCEESSCG
T ss_pred C-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEee-----cC--CCCceecCCH
Confidence 5 99999999999 999999999999999999853 23 3667777543
No 422
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=89.81 E-value=0.21 Score=40.83 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=41.2
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|+..|.+. ++.|..|||+++|+ ++..+.+.|+.|...|++..
T Consensus 28 ~d~~IL~~L~~~---~~~s~~eLA~~lgl----S~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 28 IDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 456788888875 58999999999999 99999999999999999985
No 423
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=89.75 E-value=0.18 Score=40.19 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=41.0
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|+..|.+. ++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 9 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 9 LDRGILEALMGN---ARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHHC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcce
Confidence 345678888875 58999999999999 99999999999999999985
No 424
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=89.67 E-value=1.2 Score=35.33 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=51.2
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCC-CCCCCCcchHHHHHHHHhcccccccccccCC----CCccccccccchhchh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLP-TKNPDAHTVLDRILRLLASYSVLNCSLRNLP----DGKVERLYGLAPVCKF 115 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~----~g~~~~~y~~t~~~~~ 115 (366)
.++.|+..|...+ .+..|+++|++.++ + ++.-+.+.|+.|+..|+|++... +. .|.-...|++|+.+..
T Consensus 30 tR~~IL~~Ll~~p-~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~-~~~~~~rGrP~k~Y~LT~~Gr~ 103 (151)
T 3u1d_A 30 TRLDVLHQILAQP-DGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPV-PRAKSVDDPPTTFYAVTGEGIA 103 (151)
T ss_dssp HHHHHHHHHHHST-TSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEC-CCCTTSSSCCCEEEEECHHHHH
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeec-CcCcccCCCCceEEEECHHHHH
Confidence 4555666665531 24579999999999 8 99999999999999999986411 10 0111237999999986
Q ss_pred hhc
Q 017777 116 LTK 118 (366)
Q Consensus 116 l~~ 118 (366)
.+.
T Consensus 104 ~l~ 106 (151)
T 3u1d_A 104 LLR 106 (151)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 425
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=89.63 E-value=0.24 Score=38.74 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=39.4
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
..|.++||+++++ ++.-+.++|+-|...|+|+..+..+.+|+....|.+++.-.
T Consensus 51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~e 104 (135)
T 2v79_A 51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWG 104 (135)
T ss_dssp SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHH
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHH
Confidence 5799999999999 99999999999999999997422112222224555554443
No 426
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=89.53 E-value=0.17 Score=41.45 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=49.1
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.|+..|...+..++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERRE-DERDRR-SASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence 45667888877531012899999999999 9999999999999999999741 111111 12467777666554
No 427
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=89.37 E-value=0.17 Score=36.74 Aligned_cols=52 Identities=15% Similarity=0.262 Sum_probs=41.1
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+.|..+||+.+++ ++..+.++++.|+..|+|.. +.|+. ...|.+|+.+..+.
T Consensus 30 ~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~----~~d~R-~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS----PHSYVWLIIKKFEEAKMVEC----ELEGR-TKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEE----EEETT-EEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccC----CCCCC-eEEEEEChhHHHHH
Confidence 3899999999999 99999999999999999932 12211 13588888877655
No 428
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=89.33 E-value=0.15 Score=43.03 Aligned_cols=69 Identities=17% Similarity=-0.007 Sum_probs=50.7
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.|+..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.+.. .+.|+. .-.+.+|+.+..+.
T Consensus 48 ~~q~~iL~~L~~~---~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 48 INEHHILWIAYQL---NGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSK-RLNDKR-NTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHHHH---TSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEEC-C-------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec-CCCCCc-eEEEEECHHHHHHH
Confidence 3455677778765 48999999999999 9999999999999999998742 111211 12577888777555
No 429
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=89.17 E-value=0.23 Score=40.47 Aligned_cols=46 Identities=15% Similarity=0.331 Sum_probs=40.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|+..|... ++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 18 ~d~~IL~~L~~~---~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 18 LDRNILRLLKKD---ARLTISELSEQLKK----PESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 345678888875 58999999999999 99999999999999999975
No 430
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=89.09 E-value=0.51 Score=35.77 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=53.8
Q ss_pred HHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCC--------CCCCCCc-chHHHHHHHHhcccccccccccCCCCccccc
Q 017777 36 VLKSAIELDLLEIIAKAGPDAFMSPKDIASQLP--------TKNPDAH-TVLDRILRLLASYSVLNCSLRNLPDGKVERL 106 (366)
Q Consensus 36 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~--------~~~~~~~-~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~ 106 (366)
++.-..++-|+..|.. +|.+.-+|++.++ + ++ ..+.+.|+-|+..|+|+..... .+|+..-.
T Consensus 9 ~~~~~~~~~IL~~L~~----~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~-~~~~~r~~ 79 (118)
T 2esh_A 9 FRGWWLASTILLLVAE----KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDT-TVSPPRKI 79 (118)
T ss_dssp HHHHHHHHHHHHHHHH----SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEEC-SSSSCEEE
T ss_pred cccchHHHHHHHHHHc----CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeec-CCCCCceE
Confidence 3445566777888877 4999999999883 6 88 8999999999999999874211 12211346
Q ss_pred cccchhchhhh
Q 017777 107 YGLAPVCKFLT 117 (366)
Q Consensus 107 y~~t~~~~~l~ 117 (366)
|.+|+.+...+
T Consensus 80 Y~LT~~G~~~l 90 (118)
T 2esh_A 80 YRITPQGKLYL 90 (118)
T ss_dssp EEECHHHHHHH
T ss_pred EEEChHHHHHH
Confidence 89999888655
No 431
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=88.64 E-value=0.14 Score=36.07 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=39.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.+..|+..|... ++.|+.||++.++.....++.-+.++|+.|+..|+|.+.
T Consensus 10 ~e~~vL~~L~~~---~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKH---SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTS---SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 456677777764 589999999999731001788999999999999999974
No 432
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=88.56 E-value=0.2 Score=42.46 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=43.6
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.+..+||+.+++ ++..+.+.++-|...|+|++. . ...+.+|+.++.+.
T Consensus 19 ~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~----~----~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 19 NKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKD----K----KAGYLLTDLGLKLV 68 (214)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----T----TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEe----c----CCCeEECHHHHHHH
Confidence 68999999999999 999999999999999999974 1 35688888887655
No 433
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=88.50 E-value=0.22 Score=36.61 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=33.1
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
++.|..|||+.+++ +..-+.+.|+.|...|+|...
T Consensus 35 ~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 35 KPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 48999999999999 999999999999999999974
No 434
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=88.48 E-value=0.13 Score=44.36 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=45.9
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+.+|.-..++.|+..|.. +|.|+.+||+.+++ ++..+.+.|+.|...|+|..
T Consensus 6 lkaL~~~~R~~IL~~L~~----g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC----MECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT----TTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 455666677888888886 59999999999999 99999999999999999986
No 435
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=88.30 E-value=0.48 Score=35.94 Aligned_cols=76 Identities=21% Similarity=0.221 Sum_probs=54.6
Q ss_pred HHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC------CCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccc
Q 017777 35 MVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL------PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYG 108 (366)
Q Consensus 35 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~ 108 (366)
+.++-.+++=|+..|.+ +|.+.-+|++.+ ++ ++..+...|+-|+..|+|+........|+..-.|+
T Consensus 6 ~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~ 77 (117)
T 4esf_A 6 EMLKGSLEGCVLEIISR----RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYS 77 (117)
T ss_dssp HHHHHHHHHHHHHHHHH----SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEE
T ss_pred HHHHChHHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEE
Confidence 34555566667778877 499999999987 67 89999999999999999986421111122134699
Q ss_pred cchhchhhhc
Q 017777 109 LAPVCKFLTK 118 (366)
Q Consensus 109 ~t~~~~~l~~ 118 (366)
+|+.++..+.
T Consensus 78 LT~~G~~~l~ 87 (117)
T 4esf_A 78 LNEAGRQELE 87 (117)
T ss_dssp ECHHHHHHHH
T ss_pred ECHHHHHHHH
Confidence 9998886553
No 436
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=87.83 E-value=0.15 Score=40.35 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=46.6
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+.++..|... ++++.|..+||+.+++ ++..+.++++-|+..|+|++.. .+.|+. .-...+|+.+..+.
T Consensus 38 ~~vL~~L~~~-~~~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 38 YEALVLLTFS-KSGELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRP-NPNDGR-GTLATITDKGREVV 105 (147)
T ss_dssp HHHHHHHHTS-GGGEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CC-----CEEEEECHHHHHHH
T ss_pred HHHHHHHHHC-CCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEee-cCCcCc-eeEEEECHHHHHHH
Confidence 3455555421 1158999999999999 9999999999999999999752 112211 12366777776554
No 437
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=87.76 E-value=0.84 Score=40.29 Aligned_cols=97 Identities=18% Similarity=0.005 Sum_probs=67.7
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----CCceEEEccCCC------CCC-CCCEEEecccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----PGVEHVGGDMFV------SVP-KGDAIFIKWIC 269 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~------~~~-~~D~i~~~~~l 269 (366)
...+||+=+|+|.++.+++. +.-+++.+|. +..++..+++ .+++++..|.+. +.+ ..|+|++---.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 46789999999999999998 4467899997 6666655543 579999999754 122 23999886554
Q ss_pred ccCChHHHHHHHHHHHHh--CCCCcEEEEEccccC
Q 017777 270 HDWSDEHCVKFLKNCYEA--LPVNGKVIVAESILP 302 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~--L~pgG~lli~e~~~~ 302 (366)
.. ..+..++++.+.+. +.|+|.++|.=++..
T Consensus 170 e~--k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 170 ER--KEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp CS--TTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred CC--CcHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 42 12344556666553 468999999766654
No 438
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=87.74 E-value=0.24 Score=36.46 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=40.5
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.++.|+..|-+. ++.|+.||++.++...+.++.-+.++|+-|+..|+|.+.
T Consensus 36 ~e~~VL~~L~~~---~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 36 AELIVMRVIWSL---GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp SCSHHHHHHHHH---SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 356678888765 599999999999851111578899999999999999974
No 439
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=86.82 E-value=0.41 Score=37.07 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=43.1
Q ss_pred HHHHhhChHHHHhhcCCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcccccccc
Q 017777 38 KSAIELDLLEIIAKAGPDAFMSPKDIASQL-----PTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 38 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.+..+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+.
T Consensus 9 ~T~qR~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 9 STRQRAAISTLLETLD--DFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHCC--SCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEE
T ss_pred CCHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEE
Confidence 3566778899997643 589999999998 66 888899999999999999875
No 440
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=86.81 E-value=0.27 Score=38.46 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=38.5
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+..++..|...+ +|.|..|||+.+++ ++..+.+.|+.|+..|+|++.
T Consensus 28 ~~~il~~L~~~~--~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 28 VGAVYAILYLSD--KPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHHHCS--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 334566664211 58999999999999 999999999999999999974
No 441
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=86.73 E-value=0.32 Score=38.47 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=42.0
Q ss_pred hhChHHHHhhcC--CCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 42 ELDLLEIIAKAG--PDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 42 ~lglf~~L~~~~--~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.++..|...+ ..+++|..+||+.+++ ++..+.++++-|+..|+|... .+.|+. .-...+|+.+..+.
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~--~~~DrR-~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVM--AGADAR-CKRIELTAKGRAAL 105 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC--------------CCBCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee--CCCCCC-eeEEEECHHHHHHH
Confidence 445566665432 1246899999999999 999999999999999999542 122221 12466776666554
No 442
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=86.70 E-value=2.7 Score=38.92 Aligned_cols=61 Identities=10% Similarity=0.170 Sum_probs=38.3
Q ss_pred CchHHHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-------CCCeEEEecchh
Q 017777 170 DLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-------PSIKGINFDLPH 235 (366)
Q Consensus 170 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~~~ 235 (366)
.|+....|.+....+.. ....... .+.+.+|+|+|+|.|.++..+++.. ..++++.++..+
T Consensus 54 apeis~~FGe~la~~~~----~~w~~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp 121 (387)
T 1zkd_A 54 SPEISQMFGELLGLWSA----SVWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP 121 (387)
T ss_dssp HHHHCHHHHHHHHHHHH----HHHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred CCchHHHHHHHHHHHHH----HHHHHcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCH
Confidence 35555566665544321 1222233 3445689999999999999887653 345788888733
No 443
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=86.61 E-value=0.41 Score=36.34 Aligned_cols=77 Identities=13% Similarity=0.128 Sum_probs=56.5
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCC------CCCCCCcchHHHHHHHHhcccccccccccCCCCcccccc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLP------TKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLY 107 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y 107 (366)
.++++-..++-|+..|.+ +|.+.-+|++.++ + ++..+.+.|+-|+..|+|+........|+..-.|
T Consensus 8 ~~l~~g~l~~~IL~lL~~----~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y 79 (117)
T 3elk_A 8 ERILHGLITLYILKELVK----RPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVY 79 (117)
T ss_dssp CHHHHHHHHHHHHHHHHH----SCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEE
T ss_pred HHHHhhHHHHHHHHHHHc----CCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEE
Confidence 345566677778888887 4999999999886 6 7889999999999999998642111122113479
Q ss_pred ccchhchhhhc
Q 017777 108 GLAPVCKFLTK 118 (366)
Q Consensus 108 ~~t~~~~~l~~ 118 (366)
++|+.++..+.
T Consensus 80 ~lT~~G~~~l~ 90 (117)
T 3elk_A 80 HITDAGKKFLC 90 (117)
T ss_dssp EECHHHHHHHH
T ss_pred EECHHHHHHHH
Confidence 99999986553
No 444
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=86.49 E-value=0.44 Score=39.71 Aligned_cols=35 Identities=14% Similarity=-0.042 Sum_probs=32.3
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.|.|..|||+.+|+ +...+.+.|+.|+..|++.++
T Consensus 23 ~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 23 YPPSVREIARRFRI----TPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC
T ss_pred CCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEec
Confidence 48999999999999 788899999999999999963
No 445
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=86.44 E-value=0.37 Score=33.18 Aligned_cols=47 Identities=13% Similarity=0.266 Sum_probs=41.4
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+-.|++.|.+.+ .|++..+||+.+|+ +..-+...|..|-..|.|..
T Consensus 20 ~eekVLe~LkeaG--~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~S 66 (80)
T 2lnb_A 20 LEQRILQVLTEAG--SPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSL 66 (80)
T ss_dssp HHHHHHHHHHHHT--SCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccC
Confidence 3456788888875 69999999999999 99999999999999999884
No 446
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=86.35 E-value=0.72 Score=34.83 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=54.5
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC--------CCCCCCCcchHHHHHHHHhcccccccccccCCCCcccc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL--------PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVER 105 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~ 105 (366)
.+.++-..++=|+..|.+ +|.+--+|.+.+ ++ ++..+.+.|+-|+..|+|+.......+|+..-
T Consensus 6 ~~~~~g~l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk 77 (116)
T 3f8b_A 6 KEMLRAQTNVILLNVLKQ----GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRK 77 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH----CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEE
T ss_pred HHHHhchHHHHHHHHHHh----CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCce
Confidence 345556667777888887 489999998887 56 89999999999999999986421101222134
Q ss_pred ccccchhchhhh
Q 017777 106 LYGLAPVCKFLT 117 (366)
Q Consensus 106 ~y~~t~~~~~l~ 117 (366)
.|++|+.++..+
T Consensus 78 ~Y~LT~~G~~~l 89 (116)
T 3f8b_A 78 YYRLTEIGHENM 89 (116)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEECHHHHHHH
Confidence 699998888655
No 447
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=85.31 E-value=1.9 Score=37.51 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=64.0
Q ss_pred CCCeEEEEeCCccHHHHHHHHh-------CCCCeEEEecc----hhH------------------------Hh-------
Q 017777 201 GLNSVVDVGGGIGATLNMIISK-------YPSIKGINFDL----PHV------------------------IQ------- 238 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------~~------- 238 (366)
-+..|+|+|+-.|..+..++.. .++-+++++|. |+. ++
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 3579999999999988876542 35678999982 321 00
Q ss_pred hCCC----CCCceEEEccCCCC-------CCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 239 DAPA----FPGVEHVGGDMFVS-------VPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 239 ~a~~----~~~v~~~~~D~~~~-------~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
..+. .++|+++.|++.+. .|.. |++++-.=.+ +.....+..+...|+|||.|++-+.
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y----~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY----EPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH----HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc----chHHHHHHHHHHHhCCCcEEEEcCC
Confidence 0111 16799999998762 2322 7776643221 3345789999999999999998664
No 448
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=85.06 E-value=0.54 Score=33.91 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=38.2
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
++.|+..|.+.+ +..++..|||+++++ +..-+.+.|+.|+..|+|.+
T Consensus 22 q~~Vl~~I~~~g-~~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 22 EKLVYQIIEDAG-NKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHHHHHHHHC-TTCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 345566666521 027999999999999 99999999999999999984
No 449
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=84.80 E-value=0.94 Score=31.16 Aligned_cols=35 Identities=9% Similarity=0.186 Sum_probs=32.2
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
...|+.+||+++|+ +..-+.|.|.-|...|+|...
T Consensus 28 ~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 28 DYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp CEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecC
Confidence 35899999999999 899999999999999999874
No 450
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=84.39 E-value=0.42 Score=30.71 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=40.9
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+-.|++.|..+| |-+.++.+|+..|+ +.+-+-.+|+-|++-|++..
T Consensus 12 e~~lL~yIr~sG--GildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNG--GFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTT--SEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcC--CEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence 446788999876 78899999999999 99999999999999999874
No 451
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=84.30 E-value=4.3 Score=36.37 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=53.5
Q ss_pred CCeEEEEeCCc-c-HHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCCCEEEeccccccCChHHH
Q 017777 202 LNSVVDVGGGI-G-ATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKGDAIFIKWICHDWSDEHC 277 (366)
Q Consensus 202 ~~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~D~i~~~~~lh~~~~~~~ 277 (366)
..+|.=||+|. | .++..+.+.....+++++|. ++.++.+.+..-+.....|..+ -....|+|+++- |....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHH
Confidence 36899999883 3 34455555433237899997 5555555433222222333322 233459998753 33445
Q ss_pred HHHHHHHHHhCCCCcEEEE
Q 017777 278 VKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 278 ~~~L~~~~~~L~pgG~lli 296 (366)
..+++++...++||..++-
T Consensus 108 ~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 108 REIAKKLSYILSEDATVTD 126 (314)
T ss_dssp HHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHhhccCCCcEEEE
Confidence 6788999999999876544
No 452
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=84.17 E-value=0.7 Score=34.96 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=55.3
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC------CCCCCCCcchHHHHHHHHhcccccccccccCCCCcccccc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL------PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLY 107 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y 107 (366)
.++++-..++=|+..|.+ +|.+--+|++.+ ++ ++..+...|+-|+..|+|+.......+|+..-.|
T Consensus 7 ~~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y 78 (116)
T 3hhh_A 7 TELLKGILEGLVLAIIQR----KETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFY 78 (116)
T ss_dssp HHHHTTHHHHHHHHHHHH----SCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEE
T ss_pred HHHHhhhHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEE
Confidence 345555566667788887 499999999987 57 8999999999999999998642111122223469
Q ss_pred ccchhchhhhc
Q 017777 108 GLAPVCKFLTK 118 (366)
Q Consensus 108 ~~t~~~~~l~~ 118 (366)
++|+.++..+.
T Consensus 79 ~lT~~G~~~l~ 89 (116)
T 3hhh_A 79 RLTSSGEAELA 89 (116)
T ss_dssp EECHHHHHHHH
T ss_pred EECHHHHHHHH
Confidence 99998886553
No 453
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=84.12 E-value=0.62 Score=40.49 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=50.7
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|...+ +++.|..|||+.+++ ++..+.++++-|+..|+|++.. .+.|+. .-...+|+.+..+.
T Consensus 158 ~~q~~vL~~L~~~~-~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~-~~~DrR-~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 158 FVEFTILAIITSQN-KNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKER-STEDER-KILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHHHTTT-TCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEE-CSSSTT-CEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeC-CCCCCC-eEEEEECHHHHHHH
Confidence 34566777887642 025899999999999 9999999999999999999752 122211 12456676666554
No 454
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=83.68 E-value=0.64 Score=36.68 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=41.8
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcccccccc
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQL-----PTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+..+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+.
T Consensus 21 T~qR~~Il~~L~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 21 TPQRHAILEYLVNSM--AHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp CHHHHHHHHHHHHCS--SCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEE
Confidence 455667899997643 589999999999 55 888899999999999999875
No 455
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=83.66 E-value=0.6 Score=38.56 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=40.5
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccc-ccc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSV-LNC 93 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~-l~~ 93 (366)
--...|++.|.+.+ ++.|..|||+.+++ +++-+++-++.|...|+ +..
T Consensus 21 ~R~~~Il~~L~~~~--~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 21 ERLKSIVRILERSK--EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHCS--SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 44567888887632 47999999999999 99999999999999999 763
No 456
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=83.52 E-value=1.3 Score=38.61 Aligned_cols=50 Identities=18% Similarity=0.172 Sum_probs=37.4
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP 241 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 241 (366)
.++.++..+. .....|||..||+|..+....+. +.+++++|+ +..++.++
T Consensus 201 l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 201 LIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 4556666543 45679999999999999987774 568999998 66666554
No 457
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=83.33 E-value=0.28 Score=37.19 Aligned_cols=46 Identities=13% Similarity=0.264 Sum_probs=38.6
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCC----CCCCCCcchHHHHHHHHhcccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLP----TKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~----~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
++.|+..|... +|.|..+||+.++ + ++..+.++|+-|+..|+|.+.
T Consensus 12 ~~~vL~~l~~~---~~~t~~ela~~l~~~~~~----s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 12 EWEVMNIIWMK---KYASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHHH---SSEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHHhccCCC----cHhhHHHHHHHHHHCCCeEEE
Confidence 44566666654 4899999999999 6 799999999999999999974
No 458
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=82.59 E-value=0.53 Score=37.21 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=52.6
Q ss_pred HHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC--------CCCCCCCcchHHHHHHHHhcccccccccccCCCCcccccc
Q 017777 36 VLKSAIELDLLEIIAKAGPDAFMSPKDIASQL--------PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLY 107 (366)
Q Consensus 36 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y 107 (366)
++.--.++-|+..|.+ +|.+.-||++.+ ++ ++..+.+.|+-|+..|+|+.......+|+..-.|
T Consensus 37 ~~~g~~~~~IL~~L~~----~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y 108 (145)
T 1xma_A 37 VIRGYVDTIILSLLIE----GDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYY 108 (145)
T ss_dssp SGGGTHHHHHHHHHHH----CCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEE
T ss_pred HhcCcHHHHHHHHHHh----CCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEE
Confidence 3444566777777876 489999988887 57 8999999999999999998642110111113468
Q ss_pred ccchhchhhh
Q 017777 108 GLAPVCKFLT 117 (366)
Q Consensus 108 ~~t~~~~~l~ 117 (366)
.+|+.++.++
T Consensus 109 ~LT~~G~~~l 118 (145)
T 1xma_A 109 RITPEGIKYY 118 (145)
T ss_dssp EECHHHHHHH
T ss_pred EECHHHHHHH
Confidence 9998887655
No 459
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=82.07 E-value=0.89 Score=37.20 Aligned_cols=66 Identities=15% Similarity=0.325 Sum_probs=47.7
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhC--------CCCCCCCcchHHHHHHHHhcccccccccccCCCC-ccccccccch
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQL--------PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDG-KVERLYGLAP 111 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g-~~~~~y~~t~ 111 (366)
+++-|+..|.. +|.+.-||++.+ ++ ++..+.+.|+-|+..|+|+.... ..+| +..-.|.+|+
T Consensus 3 l~~~iL~lL~~----~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~-~~~~~~~r~~Y~lT~ 73 (179)
T 1yg2_A 3 LPHVILTVLST----RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLE-PQEGKPDRKVYSITQ 73 (179)
T ss_dssp HHHHHHHHHHH----CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC----------CEEECH
T ss_pred hHHHHHHHHhc----CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEee-cCCCCCCceEEEeCh
Confidence 34557777877 499999999998 46 88999999999999999986421 1111 1134699999
Q ss_pred hchh
Q 017777 112 VCKF 115 (366)
Q Consensus 112 ~~~~ 115 (366)
.++.
T Consensus 74 ~G~~ 77 (179)
T 1yg2_A 74 AGRS 77 (179)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9873
No 460
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=82.03 E-value=4.8 Score=37.07 Aligned_cols=119 Identities=16% Similarity=0.170 Sum_probs=70.9
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCe-EEEecc-hhHHhhCCC-CCCceEEEccCCCC----C-------CCCCEEEeccc
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIK-GINFDL-PHVIQDAPA-FPGVEHVGGDMFVS----V-------PKGDAIFIKWI 268 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~----~-------~~~D~i~~~~~ 268 (366)
.+++|+=||.|.++..+..+. .+ +..+|. +..++..+. .+...++++|+.+- . +..|+++...-
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 479999999999999998864 54 457776 555554443 36778888888751 1 12399887554
Q ss_pred cccCC-------hHHHHHHHH---HHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHH
Q 017777 269 CHDWS-------DEHCVKFLK---NCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRA 338 (366)
Q Consensus 269 lh~~~-------~~~~~~~L~---~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 338 (366)
...|+ ++....++. ++.+.++| .+++.|.+..-. . .......+++.
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~gl~-------------s--------~~~~~~~~~i~- 136 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVPGIM-------------Q--------EKYSGIRNKAF- 136 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECTTTT-------------C--------GGGHHHHHHHH-
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecchHhh-------------c--------cCcHHHHHHHH-
Confidence 43333 111222333 33344566 567777654321 0 00011245667
Q ss_pred HHHHcCCce
Q 017777 339 LAKAAGFQG 347 (366)
Q Consensus 339 ll~~aGf~~ 347 (366)
.|++.||.+
T Consensus 137 ~l~~~GY~v 145 (376)
T 3g7u_A 137 NLVSGDYDI 145 (376)
T ss_dssp HHHHTTEEE
T ss_pred HHHcCCCcc
Confidence 888999987
No 461
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=81.28 E-value=1.2 Score=32.64 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=33.4
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHh
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLA 86 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~ 86 (366)
.+.++||+..|.. |.+|-.|||+.+|+ +...+.|.=+.|.
T Consensus 44 l~~R~~l~~~L~~----ge~TQREIA~~lGi----S~stISRi~r~L~ 83 (101)
T 1jhg_A 44 LGTRVRIIEELLR----GEMSQRELKNELGA----GIATITRGSNSLK 83 (101)
T ss_dssp HHHHHHHHHHHHH----CCSCHHHHHHHHCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----CCcCHHHHHHHHCC----ChhhhhHHHHHHH
Confidence 4566999999988 47999999999999 8888888766653
No 462
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=80.71 E-value=0.65 Score=34.03 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=38.4
Q ss_pred HHHHHhhChHH-HHhhcCCCCCC-CHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 37 LKSAIELDLLE-IIAKAGPDAFM-SPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 37 l~~a~~lglf~-~L~~~~~~~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+.-.++..|.+ .+..+ ..+ |..+||+.+++ +..-+++-|+.|...|+|+..
T Consensus 16 l~~~i~~~I~~~~l~~g---~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 16 VATHFRTLIKSGELAPG---DTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHTTTTSCCTT---SBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHhCCCCCc---CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 33444444544 33332 355 99999999999 999999999999999999863
No 463
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=80.61 E-value=1.2 Score=35.35 Aligned_cols=50 Identities=20% Similarity=0.411 Sum_probs=42.9
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcccccccc
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQL-----PTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+..+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+.
T Consensus 26 T~qR~~IL~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 26 SKQREEVVSVLYRSG--THLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp HHHHHHHHHHHHHCS--SCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEE
Confidence 667778999998743 589999999998 56 888899999999999999874
No 464
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=80.28 E-value=0.95 Score=33.63 Aligned_cols=71 Identities=21% Similarity=0.181 Sum_probs=50.5
Q ss_pred HHHHhhChHHHHhhcCCCCCCCHHHHHhh----CCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 38 KSAIELDLLEIIAKAGPDAFMSPKDIASQ----LPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 38 ~~a~~lglf~~L~~~~~~~~~t~~ela~~----~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
+-..++-|+..|.+ +|.+--+|++. +++ ++..+.+.|+-|+..|+|+.... +.+|+..-.|.+|+.+
T Consensus 7 ~g~l~~~IL~~L~~----~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~-~~~~r~r~~y~LT~~G 77 (108)
T 3l7w_A 7 ALLIEYLILAIVSK----HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQ-EHQGRRRKYYHLTDSG 77 (108)
T ss_dssp HHHHHHHHHHHHHH----SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEE-EETTEEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHc----CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEee-cCCCCcceEEEECHHH
Confidence 34456667777877 48887777766 578 99999999999999999987521 1122212358899888
Q ss_pred hhhh
Q 017777 114 KFLT 117 (366)
Q Consensus 114 ~~l~ 117 (366)
+..+
T Consensus 78 ~~~l 81 (108)
T 3l7w_A 78 EKHL 81 (108)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8655
No 465
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=79.78 E-value=1.3 Score=44.52 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=68.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHhC-------CC-----CeEEEecc----hhHHhhC-CC--------------C------
Q 017777 201 GLNSVVDVGGGIGATLNMIISKY-------PS-----IKGINFDL----PHVIQDA-PA--------------F------ 243 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~-------p~-----~~~~~~D~----~~~~~~a-~~--------------~------ 243 (366)
+.-+|+|+|-|+|.....+.+.+ |. ++++.++. .+.+..+ .. .
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 45699999999999888776653 22 45677763 2222211 00 0
Q ss_pred --------C--CceEEEccCCC--C-CC---C--CCEEEecccc-ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCC
Q 017777 244 --------P--GVEHVGGDMFV--S-VP---K--GDAIFIKWIC-HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVT 304 (366)
Q Consensus 244 --------~--~v~~~~~D~~~--~-~~---~--~D~i~~~~~l-h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 304 (366)
. .+++..+|..+ + .+ . .|++++-..- ..-|+--...+++.+.+.++|||.+.-..
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------ 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT------ 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC------
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc------
Confidence 1 24556677654 1 21 1 2888763211 11011112467888889999988765311
Q ss_pred CCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 305 PDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
.....++.|.++||.+.....
T Consensus 212 ---------------------------~~~~vr~~l~~aGf~~~~~~~ 232 (689)
T 3pvc_A 212 ---------------------------AAGFVRRGLQQAGFNVTKVKG 232 (689)
T ss_dssp ---------------------------CCHHHHHHHHHTTCEEEEEEC
T ss_pred ---------------------------CcHHHHHHHHhCCeEEEeccC
Confidence 013567788999998776553
No 466
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=79.75 E-value=2.7 Score=42.00 Aligned_cols=120 Identities=18% Similarity=0.156 Sum_probs=68.0
Q ss_pred CCCeEEEEeCCccHHHHHHHHhC-------CC-----CeEEEecc----hhHHhhCCC---------------C------
Q 017777 201 GLNSVVDVGGGIGATLNMIISKY-------PS-----IKGINFDL----PHVIQDAPA---------------F------ 243 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~-------p~-----~~~~~~D~----~~~~~~a~~---------------~------ 243 (366)
..-+|+|+|-|+|.......+.+ |. ++++.++. ++.+..+-. .
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34689999999999777765543 22 44677763 333321110 0
Q ss_pred ----------CCceEEEccCCC---CCC-----CCCEEEecccc-ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCC
Q 017777 244 ----------PGVEHVGGDMFV---SVP-----KGDAIFIKWIC-HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVT 304 (366)
Q Consensus 244 ----------~~v~~~~~D~~~---~~~-----~~D~i~~~~~l-h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 304 (366)
-.++...+|+.+ ..+ ..|++++-..- ..-|+--...+++.+.++++|||.+.....
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~----- 220 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS----- 220 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCC-----
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccC-----
Confidence 113345566544 111 12888773211 110111124789999999999998754210
Q ss_pred CCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 305 PDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
....++.|.++||.+......
T Consensus 221 ----------------------------~~~vr~~L~~aGf~v~~~~~~ 241 (676)
T 3ps9_A 221 ----------------------------AGFVRRGLQDAGFTMQKRKGF 241 (676)
T ss_dssp ----------------------------CHHHHHHHHHHTCEEEEEECS
T ss_pred ----------------------------cHHHHHHHHhCCeEEEecccc
Confidence 134677888999987665433
No 467
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=79.58 E-value=0.78 Score=35.69 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=40.4
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.++.|+..|...+ +|.|..||++.++...+.++.-+.++|+-|+..|+|.+.
T Consensus 10 ~e~~vL~~L~~~~--~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRT--EPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCS--SCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4566777787621 489999999999821111888999999999999999974
No 468
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=79.18 E-value=1 Score=42.91 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=41.7
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.-++.|+..|.+. +++++|..|||+.+++ ++..+.|+++-|+..|+|++.
T Consensus 404 ~~q~~vl~~l~~~-~~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~ 453 (487)
T 1hsj_A 404 YEEIYILNHILRS-ESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKK 453 (487)
T ss_dssp HHHHHHHHHHHTC-SCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCE
T ss_pred HHHHHHHHHHHhC-CCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeec
Confidence 3456677778764 1148999999999999 999999999999999999975
No 469
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=79.12 E-value=0.96 Score=38.61 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=43.5
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
++.|..++|+.+++ +++.+.+.++.|+..|++++.. .+. ...+.+|+.+..+..
T Consensus 26 ~~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~---~~R--~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 26 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTV---TKR--GQILNITEKGLDVLY 79 (230)
T ss_dssp EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE---ETT--EEEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEE---cCC--eEEEEECHHHHHHHH
Confidence 36899999999999 9999999999999999999741 100 356788888876663
No 470
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=79.03 E-value=0.78 Score=34.60 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=50.0
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCC------CCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLP------TKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
+++-|+..|.. +|.+--+|++.+. + ++..+...|+-|+..|+|+.......+|+..-.|++|+.++
T Consensus 10 l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~ 81 (115)
T 4esb_A 10 LEGCILYIISQ----EEVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGL 81 (115)
T ss_dssp HHHHHHHHHHH----SCEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHH
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHH
Confidence 34456677776 4899999998875 6 89999999999999999986421111222234699998888
Q ss_pred hhh
Q 017777 115 FLT 117 (366)
Q Consensus 115 ~l~ 117 (366)
..+
T Consensus 82 ~~l 84 (115)
T 4esb_A 82 EQL 84 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 471
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=78.98 E-value=1.1 Score=35.02 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=47.7
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCC-CCcchHHHHHHHHhcccccccccccCCCCccccccccc
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNP-DAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLA 110 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~-~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t 110 (366)
+..+.-|++.|...+ ++.|++||.+.+.-+.| .+..-+.|.|+.|+..|+|.+.. ..+| ..+|.+.
T Consensus 13 T~qR~~Il~~L~~~~--~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~--~~~g--~~~Y~~~ 79 (139)
T 3mwm_A 13 TRQRAAVSAALQEVE--EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLR--TAEG--ESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHTTCS--SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEE--CTTS--CEEEECC
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEE--cCCC--ceEEEEC
Confidence 556777899998753 58999999999842111 17788999999999999998752 1223 3567654
No 472
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=78.79 E-value=0.58 Score=35.56 Aligned_cols=51 Identities=14% Similarity=0.222 Sum_probs=40.6
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.++.|+..|.+. +|.|..|||+.++...+.++.-+.++|+-|+..|+|.+.
T Consensus 11 ~q~~vL~~L~~~---~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 11 AEWDVMNIIWDK---KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHS---SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 456677777775 489999999999741111788999999999999999974
No 473
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=78.37 E-value=0.95 Score=38.66 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=39.7
Q ss_pred CHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 59 SPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 59 t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+..+||+.+++ ++..+.+.|+-|+..|+|++. . +..+.+|+.+..+.
T Consensus 26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~----~----~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA----G----DRHLELTEKGRALA 72 (230)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----T----TSCEEECHHHHHHH
T ss_pred cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe----C----CccEEECHHHHHHH
Confidence 44999999999 999999999999999999973 1 35688888877555
No 474
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=78.12 E-value=3.1 Score=38.89 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=31.8
Q ss_pred CCCCeEEEEeCCccHHHHHHH-HhCCC-CeEEEecc-hhHHhh
Q 017777 200 EGLNSVVDVGGGIGATLNMII-SKYPS-IKGINFDL-PHVIQD 239 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~ 239 (366)
.+...|+|||++.|.++..++ +..+. .+++.++. |...+.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~ 267 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQT 267 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence 567899999999999999888 56665 68999986 555443
No 475
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=77.99 E-value=1.1 Score=35.09 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=40.0
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+-.+++.|.+ |+.|+.+||+.+|+ +.....-.|..|+..|.+.+.
T Consensus 13 k~~ILE~Lk~----G~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~V 57 (165)
T 2vxz_A 13 LRDILALLAD----GCKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRV 57 (165)
T ss_dssp HHHHHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHh----CCccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEE
Confidence 3457788884 69999999999999 999999999999999999875
No 476
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=77.31 E-value=1.2 Score=37.18 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=40.9
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
|.+..+||+.+++ .++-++..++-|...|+++.. .+...+|+.+..++
T Consensus 30 ~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~---------~~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 30 PLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK---------QRGHFLTLKGKEIR 77 (200)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----------CEEECHHHHHHH
T ss_pred CccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---------CCCeEECHHHHHHH
Confidence 8999999999999 999999999999999999973 35678888776544
No 477
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=77.10 E-value=12 Score=32.54 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=50.5
Q ss_pred CeEEEEeCCc-c-HHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCCCCCEEEeccccccCChHHHHH
Q 017777 203 NSVVDVGGGI-G-ATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVK 279 (366)
Q Consensus 203 ~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~~lh~~~~~~~~~ 279 (366)
.+|.=||+|. | .++..+.+..++.+++++|. ++..+.+.+.........|..+.....|+|++.- +......
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilav-----p~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAV-----PIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECS-----CHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcC-----CHHHHHH
Confidence 5788899884 3 34445555544668888886 5544443322111122233322223349888753 3344567
Q ss_pred HHHHHHHh-CCCCcEEE
Q 017777 280 FLKNCYEA-LPVNGKVI 295 (366)
Q Consensus 280 ~L~~~~~~-L~pgG~ll 295 (366)
+++.+... ++|+..++
T Consensus 82 v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 82 FIKILADLDLKEDVIIT 98 (290)
T ss_dssp HHHHHHTSCCCTTCEEE
T ss_pred HHHHHHhcCCCCCCEEE
Confidence 88888888 88876555
No 478
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=76.51 E-value=0.52 Score=43.11 Aligned_cols=62 Identities=11% Similarity=0.076 Sum_probs=0.0
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
-+..++..|... +++|..|||+.+++ ++.-++|.|+.|...|+++.. .....+|+.++.+..
T Consensus 21 r~~~iL~~l~~~---~~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~~---------~~gi~LT~~G~~~~~ 82 (345)
T 2o0m_A 21 ERFQILRNIYWM---QPIGRRSLSETMGI----TERVLRTETDVLKQLNLIEPS---------KSGMTLTERGLEVYQ 82 (345)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---------ecceEEcHHHHHHHH
Confidence 456677777765 59999999999999 999999999999999999842 234677777776554
No 479
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=76.29 E-value=6.4 Score=35.67 Aligned_cols=93 Identities=11% Similarity=0.009 Sum_probs=57.2
Q ss_pred CCCCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEcc------CCCC----CCCC-CEEEe
Q 017777 199 FEGLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGD------MFVS----VPKG-DAIFI 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D------~~~~----~~~~-D~i~~ 265 (366)
.....+||-+|+|. |.++..+++...-.+++++|. ++-.+.+++..--.++..+ ..+. .+.+ |+++-
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid 248 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 248 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEE
Confidence 66778999999885 888888888764337888885 5555555433211222111 1000 1123 88774
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.-. .+ ..++...+.|+|+|+++++-.
T Consensus 249 ~~g-----~~---~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 249 CTG-----AE---ASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CSC-----CH---HHHHHHHHHSCTTCEEEECSC
T ss_pred CCC-----Ch---HHHHHHHHHhcCCCEEEEEec
Confidence 321 11 357788889999999998764
No 480
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=75.08 E-value=3 Score=26.78 Aligned_cols=43 Identities=21% Similarity=0.185 Sum_probs=37.6
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
..+|+.|+|+..+. +-...+.-|+.|.+.|-|.+. ..+|++.+
T Consensus 17 QGMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRKR---------sSRYrlkp 59 (68)
T 3i71_A 17 QGMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRKR---------SSRYRLKP 59 (68)
T ss_dssp TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------CCEEEECC
T ss_pred ccccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhhh---------ccccccCc
Confidence 48999999999999 888899999999999999973 47787765
No 481
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=74.53 E-value=7.6 Score=30.81 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=63.3
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCCCCC-----C-CEE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVPK-----G-DAI 263 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~~-----~-D~i 263 (366)
.+....+. .-..-|||+|=|+|..=..|.+.+|+.+++++|..-.+.-.---+.=.++.||+.+..|. + .+.
T Consensus 31 ~~a~~~v~--~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~tL~~~~~r~g~~a~ 108 (174)
T 3iht_A 31 EHAIAQTA--GLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRETLPATLERFGATAS 108 (174)
T ss_dssp HHHHHHTT--TCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHhc--CCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHHHHHHHHHhcCCceE
Confidence 34444443 234679999999999999999999999999999421110000013456778887762221 2 333
Q ss_pred EeccccccCChHHHHHHHH----HHHHhCCCCcEEEEEccc
Q 017777 264 FIKWICHDWSDEHCVKFLK----NCYEALPVNGKVIVAESI 300 (366)
Q Consensus 264 ~~~~~lh~~~~~~~~~~L~----~~~~~L~pgG~lli~e~~ 300 (366)
+...=+-....++-..+.. -+..+|.|||.++-..++
T Consensus 109 LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl 149 (174)
T 3iht_A 109 LVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM 149 (174)
T ss_dssp EEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred EEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 3322221112232223333 345677889988876655
No 482
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=73.55 E-value=8.3 Score=35.57 Aligned_cols=99 Identities=14% Similarity=0.023 Sum_probs=61.0
Q ss_pred CCCCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CC---------C-CC-CEEE
Q 017777 199 FEGLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SV---------P-KG-DAIF 264 (366)
Q Consensus 199 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~---------~-~~-D~i~ 264 (366)
+....+||.+|+|. |.++..+++...-.+++++|. ++..+.+++.. .+++ |..+ +. + .+ |+++
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-a~~i--~~~~~~~~~~~~~~~~~g~g~Dvvi 259 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG-FETI--DLRNSAPLRDQIDQILGKPEVDCGV 259 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT-CEEE--ETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CcEE--cCCCcchHHHHHHHHhCCCCCCEEE
Confidence 66778999999986 888888888764338888885 66666665442 3333 3222 21 1 13 8876
Q ss_pred eccccccCC--h----HHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 265 IKWICHDWS--D----EHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 265 ~~~~lh~~~--~----~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
-.---.... . ......++.+.+.|+|||+++++-..
T Consensus 260 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~ 301 (398)
T 2dph_A 260 DAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY 301 (398)
T ss_dssp ECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred ECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence 543211000 0 00113578888999999999887654
No 483
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=73.11 E-value=2.8 Score=38.99 Aligned_cols=51 Identities=12% Similarity=0.123 Sum_probs=43.5
Q ss_pred HHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 37 LKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 37 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
++..-+..|++.|.+. +++|..|||+.+++ ++.-+.+.++.|...|++.+.
T Consensus 13 ~r~~n~~~il~~l~~~---~~~sr~~la~~~~l----s~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQL---GPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHHHHHHHSS---CSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHhHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEee
Confidence 3444455678888876 59999999999999 999999999999999999863
No 484
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=72.61 E-value=1.6 Score=40.37 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=42.0
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..+++...+..|++.|. . +|+|..|||+.+++ ++.-+.+.++-|...|++.+.
T Consensus 14 ~~~~~~~~~~~il~~l~-~---~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 14 PKSVRAENISRILKRIM-K---SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp --------CCCSHHHHH-H---SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred chhHHHHHHHHHHHHHH-c---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 45667777888999999 6 59999999999999 999999999999999999864
No 485
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=72.30 E-value=6.8 Score=35.36 Aligned_cols=90 Identities=19% Similarity=0.058 Sum_probs=57.2
Q ss_pred CCCCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCCCC-CEEEeccccccCChH
Q 017777 199 FEGLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVPKG-DAIFIKWICHDWSDE 275 (366)
Q Consensus 199 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~-D~i~~~~~lh~~~~~ 275 (366)
.....+||-+|+|. |.++..+++.. +.++++++. ++-.+.+++..--.++ .|. +...++ |+++-.-. .+
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~-~~~-~~~~~~~D~vid~~g-----~~ 245 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMGVKHFY-TDP-KQCKEELDFIISTIP-----TH 245 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTTCSEEE-SSG-GGCCSCEEEEEECCC-----SC
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCCCeec-CCH-HHHhcCCCEEEECCC-----cH
Confidence 66778999999875 88888888876 458888885 5445555443221222 221 122224 77764321 11
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 276 HCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 276 ~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
..++.+.+.|+|+|+++++-.
T Consensus 246 ---~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 246 ---YDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp ---CCHHHHHTTEEEEEEEEECCC
T ss_pred ---HHHHHHHHHHhcCCEEEEECC
Confidence 246778889999999999754
No 486
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=71.61 E-value=2.5 Score=35.93 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=41.1
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+.+..+||+.+++ ++..+.+.++-|+..|++++. . ...+.+|+.++.+.
T Consensus 24 ~~~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r~----~----~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 24 TPLRARIAERLEQ----SGPTVSQTVARMERDGLVVVA----S----DRSLQMTPTGRTLA 72 (226)
T ss_dssp CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----T----TSBEEECHHHHHHH
T ss_pred CccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe----C----CCCeEECHHHHHHH
Confidence 3456999999999 999999999999999999973 1 35688998887655
No 487
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=71.16 E-value=8.7 Score=34.97 Aligned_cols=90 Identities=12% Similarity=0.178 Sum_probs=56.1
Q ss_pred CCCeEEEEe--CCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEc--cCCC---CC-CCC-CEEEeccccc
Q 017777 201 GLNSVVDVG--GGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGG--DMFV---SV-PKG-DAIFIKWICH 270 (366)
Q Consensus 201 ~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~--D~~~---~~-~~~-D~i~~~~~lh 270 (366)
...+||-+| +|.|.++..+++...+.++++++. ++-.+.+++..--.++.. |+.+ .. +.+ |+++-+-
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~--- 247 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTT--- 247 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECS---
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECC---
Confidence 567899998 457889999998766779999986 555555543321111111 1100 11 123 7776421
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 271 DWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.. ...++.+.+.|+|+|+++++.
T Consensus 248 --g~---~~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 248 --HT---DKHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp --CH---HHHHHHHHHHSCTTCEEEECS
T ss_pred --Cc---hhhHHHHHHHhcCCCEEEEEC
Confidence 11 246788889999999999874
No 488
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=70.98 E-value=6.5 Score=35.88 Aligned_cols=94 Identities=17% Similarity=0.149 Sum_probs=57.3
Q ss_pred CCCCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEcc---CCC---C-CCCC-CEEEeccc
Q 017777 199 FEGLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGD---MFV---S-VPKG-DAIFIKWI 268 (366)
Q Consensus 199 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D---~~~---~-~~~~-D~i~~~~~ 268 (366)
.....+||-+|+|. |.++..+++...-.+++++|. ++-.+.+++..--.++..+ +.+ . .+.+ |+|+-.--
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g 267 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG 267 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCC
Confidence 56778999999885 888888888764336888875 5555555432211122111 100 0 1113 77764321
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
. ...++.+.+.|+|+|+++++-..
T Consensus 268 -----~---~~~~~~~~~~l~~~G~iv~~G~~ 291 (371)
T 1f8f_A 268 -----S---PEILKQGVDALGILGKIAVVGAP 291 (371)
T ss_dssp -----C---HHHHHHHHHTEEEEEEEEECCCC
T ss_pred -----C---HHHHHHHHHHHhcCCEEEEeCCC
Confidence 1 24578888999999999987654
No 489
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=70.88 E-value=24 Score=28.11 Aligned_cols=90 Identities=11% Similarity=0.108 Sum_probs=49.2
Q ss_pred CCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCC--------CCCCCEEEecccccc
Q 017777 202 LNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVS--------VPKGDAIFIKWICHD 271 (366)
Q Consensus 202 ~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~--------~~~~D~i~~~~~lh~ 271 (366)
..+|+=+|+|. |......+....+.+++++|. ++.++.+++ .++.++.+|..++ ....|+++...-
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~-~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~--- 114 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS-EGRNVISGDATDPDFWERILDTGHVKLVLLAMP--- 114 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH-TTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS---
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH-CCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC---
Confidence 45788898873 433333333221457888886 555554432 3567777776541 122388776321
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
+++....++. ..+.+.|+..++..
T Consensus 115 -~~~~~~~~~~-~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 115 -HHQGNQTALE-QLQRRNYKGQIAAI 138 (183)
T ss_dssp -SHHHHHHHHH-HHHHTTCCSEEEEE
T ss_pred -ChHHHHHHHH-HHHHHCCCCEEEEE
Confidence 1233333333 45566778777764
No 490
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=70.84 E-value=13 Score=32.65 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=48.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCC----CeEEEecchhHHhhCCCCCCceEEEccCCCCCCCCCEEEeccccccCChHH
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPS----IKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEH 276 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~~lh~~~~~~ 276 (366)
+...|+=||||.|.....|.+.+|+ ++.+.+|...-+.... +..++.+....+ ++.
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~~~~l~----------------~~~NV~li~~fv----de~ 119 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILN----------------GLRDVTLVTRFV----DEE 119 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGT----------------TCTTEEEEECCC----CHH
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcchhhhc----------------CCCcEEEEeccC----CHH
Confidence 3569999999999999888887765 5777777411110000 011444444432 232
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 277 CVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 277 ~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
-+++.++.++....|+|.|.-..
T Consensus 120 ---dl~~l~~~~~~~~iLLISDIRS~ 142 (307)
T 3mag_A 120 ---YLRSIKKQLHPSKIILISDVRSK 142 (307)
T ss_dssp ---HHHHHHHHHTTSCEEEEECCCC-
T ss_pred ---HHHHHHHhccCCCEEEEEEecCC
Confidence 25666666777889999887554
No 491
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=70.79 E-value=0.97 Score=36.29 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=37.9
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+..|++.|..+ ++++..+||+.+|+ ++.-+++-++.|...|+++.
T Consensus 15 ~~~Il~~l~~~---~~ls~~eLa~~lgv----Sr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 15 DRNILNELQKD---GRISNVELSKRVGL----SPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHHHHHHC---SSCCTTGGGTSSSC----CTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence 44566667664 58899999999999 88889999999999999983
No 492
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=70.74 E-value=1.9 Score=33.40 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=41.0
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcccccccc
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQL-----PTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+..+.-|++.|.+.+ +++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+.
T Consensus 17 T~qR~~Il~~L~~~~-~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 72 (136)
T 1mzb_A 17 TLPRVKILQMLDSAE-QRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRH 72 (136)
T ss_dssp CHHHHHHHHHHHCC--CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHhCC-CCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEE
Confidence 445666888887631 1489999999998 55 888899999999999999874
No 493
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=70.70 E-value=10 Score=30.84 Aligned_cols=90 Identities=16% Similarity=0.111 Sum_probs=54.9
Q ss_pred CCCCCeEEEEeC--CccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-C--------C-CCC-CEEE
Q 017777 199 FEGLNSVVDVGG--GIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-S--------V-PKG-DAIF 264 (366)
Q Consensus 199 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~--------~-~~~-D~i~ 264 (366)
+....+||.+|+ |.|..+..++... +.+++++|. ++..+.+++.. .... .|..+ + . ..+ |+++
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g-~~~~-~d~~~~~~~~~~~~~~~~~~~D~vi 112 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLG-VEYV-GDSRSVDFADEILELTDGYGVDVVL 112 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTC-CSEE-EETTCSTHHHHHHHHTTTCCEEEEE
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcC-CCEE-eeCCcHHHHHHHHHHhCCCCCeEEE
Confidence 567789999994 5677777777654 468888886 44444443322 2211 13222 1 1 123 7776
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
.+- .. ..++.+.+.|+|||+++++...
T Consensus 113 ~~~-----g~----~~~~~~~~~l~~~G~~v~~g~~ 139 (198)
T 1pqw_A 113 NSL-----AG----EAIQRGVQILAPGGRFIELGKK 139 (198)
T ss_dssp ECC-----CT----HHHHHHHHTEEEEEEEEECSCG
T ss_pred ECC-----ch----HHHHHHHHHhccCCEEEEEcCC
Confidence 432 11 3578888999999999987654
No 494
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=70.11 E-value=3 Score=25.14 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=24.0
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhccc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYS 89 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g 89 (366)
..|..+||+.+++ +..-+.++++.....|
T Consensus 21 g~s~~~IA~~lgi----s~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 21 NVSLHEMSRKISR----SRHCIRVYLKDPVSYG 49 (51)
T ss_dssp TCCHHHHHHHHTC----CHHHHHHHHHCSTTTT
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHhhHHhcC
Confidence 6899999999999 9999999987554433
No 495
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=70.04 E-value=2.8 Score=37.54 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=31.9
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLN 92 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 92 (366)
+++|.+|||+++++ ++.-++|.|..|...|+|.
T Consensus 20 ~~~~~~ela~~l~v----S~~tIrRdL~~l~~~G~v~ 52 (315)
T 2w48_A 20 QDMTQAQIARELGI----YRTTISRLLKRGREQGIVT 52 (315)
T ss_dssp SCCCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEE
Confidence 48999999999999 9999999999999999998
No 496
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=69.73 E-value=2.2 Score=32.36 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=31.9
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
|.++.+||+.+++ ++..++.||+.|+..|.+...
T Consensus 20 p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~i 53 (121)
T 2pjp_A 20 PWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITAI 53 (121)
T ss_dssp CEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 7799999999999 999999999999999999864
No 497
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=69.58 E-value=4 Score=27.35 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=38.4
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+-.|++.|... ||.++-.||+.+|++ ...-+.+.|..|...|+|+.+
T Consensus 12 ee~I~~fL~~~---Gp~~AL~IAK~LGlk---tAK~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKDN---GPQRALVIAQALGMR---TAKDVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHHH---CSEEHHHHHHHTTCC---SGGGTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHc---CCchHHHHHHHhCcc---hhhhcCHHHHHHHHccCcCCC
Confidence 44578888887 699999999999993 223378999999999999764
No 498
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=69.45 E-value=33 Score=30.71 Aligned_cols=92 Identities=12% Similarity=0.027 Sum_probs=56.1
Q ss_pred CCCCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEc----cCCCC----C----CCC-CEE
Q 017777 199 FEGLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGG----DMFVS----V----PKG-DAI 263 (366)
Q Consensus 199 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~----D~~~~----~----~~~-D~i 263 (366)
.....+||-+|+|. |.++..+++.. +.++++.|. ++-.+.+++..--.++.. |..+. . ..+ |++
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~v 244 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 244 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEE
Confidence 56678999999874 77888888876 456888875 555555543211122211 11110 1 123 887
Q ss_pred EeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 264 FIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 264 ~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+-.-- .+ ..++...+.|+|+|+++++-.
T Consensus 245 id~~g-----~~---~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 245 IDCSG-----NE---KCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp EECSC-----CH---HHHHHHHHHSCTTCEEEECSC
T ss_pred EECCC-----CH---HHHHHHHHHHhcCCEEEEEec
Confidence 64321 11 357788889999999998764
No 499
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=68.79 E-value=21 Score=27.20 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=52.1
Q ss_pred CCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCC-----C--CCCCEEEeccccccC
Q 017777 202 LNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVS-----V--PKGDAIFIKWICHDW 272 (366)
Q Consensus 202 ~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~-----~--~~~D~i~~~~~lh~~ 272 (366)
..+|+=+|||. |......+.. .+.+++++|. ++.++.+++ .++.++.+|..++ . ...|++++..-
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~---- 80 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTIP---- 80 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS----
T ss_pred CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEECC----
Confidence 36788999874 4444444333 3568899987 666665543 5788888998762 1 12387775421
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
++.....+.. ..+.+.|+.+++.
T Consensus 81 ~~~~n~~~~~-~a~~~~~~~~iia 103 (140)
T 3fwz_A 81 NGYEAGEIVA-SARAKNPDIEIIA 103 (140)
T ss_dssp CHHHHHHHHH-HHHHHCSSSEEEE
T ss_pred ChHHHHHHHH-HHHHHCCCCeEEE
Confidence 1233333334 4455677777665
No 500
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=68.64 E-value=9 Score=34.36 Aligned_cols=90 Identities=12% Similarity=0.055 Sum_probs=57.8
Q ss_pred CCCCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CC-------CCC-CEEEecc
Q 017777 199 FEGLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SV-------PKG-DAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~-------~~~-D~i~~~~ 267 (366)
.....+||-+|+|. |..+..+++.. +.+++++|. ++-.+.+++..--.++ |..+ +. ..+ |+++...
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~i--~~~~~~~~~~~~~~~g~~d~vid~~ 240 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVAV--NARDTDPAAWLQKEIGGAHGVLVTA 240 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEE--ETTTSCHHHHHHHHHSSEEEEEESS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEEE--eCCCcCHHHHHHHhCCCCCEEEEeC
Confidence 66778899999874 88999899876 458998886 5555555543211222 2211 11 013 6665432
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. . ...++.+.+.|+|+|+++++..
T Consensus 241 g-----~---~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 241 V-----S---PKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp C-----C---HHHHHHHHHHEEEEEEEEECSC
T ss_pred C-----C---HHHHHHHHHHhccCCEEEEeCC
Confidence 1 1 2468888899999999998754
Done!