Query 017780
Match_columns 366
No_of_seqs 287 out of 1361
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:21:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1536 Biotin holocarboxylase 100.0 1.1E-62 2.3E-67 491.6 25.3 333 24-365 281-649 (649)
2 PRK06955 biotin--protein ligas 100.0 1.5E-55 3.2E-60 428.0 28.1 258 92-356 15-295 (300)
3 TIGR00121 birA_ligase birA, bi 100.0 1.5E-55 3.2E-60 414.4 25.0 231 112-354 2-236 (237)
4 COG0340 BirA Biotin-(acetyl-Co 100.0 7.6E-55 1.6E-59 409.3 26.0 232 115-356 1-237 (238)
5 PRK08330 biotin--protein ligas 100.0 1.9E-54 4.1E-59 406.8 26.4 234 108-356 1-235 (236)
6 PRK11886 bifunctional biotin-- 100.0 1.2E-52 2.5E-57 410.5 27.4 250 92-356 64-317 (319)
7 PTZ00275 biotin-acetyl-CoA-car 100.0 3E-52 6.5E-57 401.9 25.2 237 107-354 14-281 (285)
8 PRK13325 bifunctional biotin-- 100.0 3E-51 6.5E-56 428.5 28.5 253 91-357 65-325 (592)
9 PTZ00276 biotin/lipoate protei 100.0 7.6E-51 1.7E-55 384.5 25.5 225 108-350 5-242 (245)
10 PRK08477 biotin--protein ligas 100.0 1.1E-48 2.3E-53 361.6 23.2 198 111-339 2-204 (211)
11 PRK05935 biotin--protein ligas 100.0 2.1E-41 4.4E-46 308.5 19.2 161 113-285 6-177 (190)
12 PF03099 BPL_LplA_LipB: Biotin 99.9 3.9E-22 8.5E-27 168.1 8.8 119 115-242 2-125 (125)
13 PF02237 BPL_C: Biotin protein 98.5 4E-07 8.6E-12 65.0 7.0 48 304-355 1-48 (48)
14 PRK14348 lipoate-protein ligas 93.8 1.2 2.6E-05 41.9 12.3 119 148-283 79-218 (221)
15 TIGR00545 lipoyltrans lipoyltr 92.1 0.45 9.8E-06 47.2 7.2 64 150-222 73-136 (324)
16 PRK14342 lipoate-protein ligas 90.0 7.6 0.00016 36.4 12.7 117 148-283 70-203 (213)
17 TIGR00214 lipB lipoate-protein 89.1 12 0.00027 34.2 13.1 116 148-283 50-183 (184)
18 COG0095 LplA Lipoate-protein l 88.2 1.3 2.8E-05 42.2 6.5 74 137-222 66-141 (248)
19 PRK14345 lipoate-protein ligas 86.3 18 0.00039 34.3 12.9 119 148-284 76-216 (234)
20 PRK14344 lipoate-protein ligas 85.8 21 0.00045 33.7 12.9 117 148-283 88-221 (223)
21 PRK03822 lplA lipoate-protein 83.8 3.9 8.5E-05 40.8 7.6 67 139-222 68-138 (338)
22 PRK14343 lipoate-protein ligas 83.0 29 0.00062 33.0 12.6 118 148-284 80-219 (235)
23 COG0321 LipB Lipoate-protein l 81.8 40 0.00088 31.7 12.8 119 148-284 76-211 (221)
24 PRK14349 lipoate-protein ligas 80.5 48 0.001 31.2 13.0 118 148-283 65-204 (220)
25 PRK14341 lipoate-protein ligas 79.0 55 0.0012 30.7 12.9 116 148-283 70-211 (213)
26 PF14563 DUF4444: Domain of un 71.4 7.7 0.00017 26.9 3.7 20 324-343 12-31 (42)
27 PRK14061 unknown domain/lipoat 70.3 10 0.00022 40.5 6.4 63 148-222 296-362 (562)
28 PF01423 LSM: LSM domain ; In 64.2 20 0.00044 26.5 5.3 33 304-339 6-38 (67)
29 cd01731 archaeal_Sm1 The archa 62.3 25 0.00054 26.4 5.5 33 305-340 9-41 (68)
30 smart00651 Sm snRNP Sm protein 58.0 27 0.00058 25.8 5.0 33 304-339 6-38 (67)
31 PRK14346 lipoate-protein ligas 57.3 1.8E+02 0.0038 27.7 12.4 59 214-283 156-228 (230)
32 cd01717 Sm_B The eukaryotic Sm 57.1 25 0.00054 27.3 4.8 33 304-339 8-40 (79)
33 cd00600 Sm_like The eukaryotic 56.6 28 0.00061 25.2 4.9 32 305-339 5-36 (63)
34 cd06168 LSm9 The eukaryotic Sm 54.9 37 0.00081 26.3 5.4 33 305-340 9-41 (75)
35 PF10842 DUF2642: Protein of u 54.4 85 0.0018 24.0 7.1 44 298-347 13-56 (66)
36 cd01728 LSm1 The eukaryotic Sm 53.7 33 0.00072 26.6 4.9 34 304-340 10-43 (74)
37 PF04017 DUF366: Domain of unk 53.2 51 0.0011 30.1 6.7 74 161-246 63-139 (183)
38 cd01726 LSm6 The eukaryotic Sm 50.1 49 0.0011 24.8 5.3 32 305-339 9-40 (67)
39 PRK00737 small nuclear ribonuc 49.4 53 0.0011 25.1 5.5 33 305-340 13-45 (72)
40 cd01727 LSm8 The eukaryotic Sm 46.5 44 0.00095 25.6 4.7 33 305-340 8-40 (74)
41 cd01719 Sm_G The eukaryotic Sm 46.4 50 0.0011 25.3 4.9 33 304-339 8-40 (72)
42 cd01722 Sm_F The eukaryotic Sm 45.2 70 0.0015 24.1 5.5 33 304-339 9-41 (68)
43 cd01732 LSm5 The eukaryotic Sm 44.9 1.4E+02 0.003 23.2 7.2 33 305-340 12-44 (76)
44 PF02107 FlgH: Flagellar L-rin 44.6 47 0.001 30.1 5.3 39 323-364 97-135 (179)
45 PRK14347 lipoate-protein ligas 43.2 2.8E+02 0.0061 25.9 12.2 118 148-283 68-208 (209)
46 cd01729 LSm7 The eukaryotic Sm 42.8 55 0.0012 25.7 4.8 33 304-339 10-42 (81)
47 PF09465 LBR_tudor: Lamin-B re 42.7 1.4E+02 0.003 22.1 7.0 45 303-349 6-51 (55)
48 PF01287 eIF-5a: Eukaryotic el 42.3 43 0.00092 25.7 3.9 23 324-346 7-29 (69)
49 COG2029 Uncharacterized conser 39.3 1.2E+02 0.0025 27.6 6.7 67 210-285 110-177 (189)
50 cd01721 Sm_D3 The eukaryotic S 37.9 1.8E+02 0.0038 22.0 7.5 33 304-339 8-40 (70)
51 PRK12698 flgH flagellar basal 36.5 68 0.0015 30.2 5.1 39 323-364 140-178 (224)
52 PRK00249 flgH flagellar basal 36.1 69 0.0015 30.1 5.1 39 323-364 139-177 (222)
53 cd01724 Sm_D1 The eukaryotic S 34.9 2.2E+02 0.0048 22.8 7.2 33 304-339 9-41 (90)
54 PF08863 YolD: YolD-like prote 34.4 2.2E+02 0.0047 22.0 8.1 49 303-351 39-88 (92)
55 cd01733 LSm10 The eukaryotic S 34.2 2.2E+02 0.0048 22.1 7.1 44 304-354 17-60 (78)
56 smart00333 TUDOR Tudor domain. 34.2 1.5E+02 0.0033 20.7 5.6 44 303-349 3-47 (57)
57 PRK09618 flgD flagellar basal 30.3 1.5E+02 0.0032 26.1 5.8 79 264-347 47-131 (142)
58 cd01723 LSm4 The eukaryotic Sm 28.9 2.7E+02 0.0058 21.3 7.8 32 305-339 10-41 (76)
59 PRK12407 flgH flagellar basal 28.1 1.2E+02 0.0026 28.6 5.2 39 323-364 137-175 (221)
60 PRK12699 flgH flagellar basal 27.7 1.2E+02 0.0026 29.1 5.2 39 323-364 164-202 (246)
61 PRK12696 flgH flagellar basal 27.4 1.2E+02 0.0027 28.8 5.2 39 323-364 153-191 (236)
62 PRK12700 flgH flagellar basal 27.2 1.3E+02 0.0027 28.6 5.2 39 323-364 147-185 (230)
63 PF11095 Gemin7: Gem-associate 27.0 3.2E+02 0.007 21.6 6.8 61 293-356 10-78 (80)
64 COG1958 LSM1 Small nuclear rib 26.0 2.4E+02 0.0051 21.7 5.8 33 304-339 15-47 (79)
65 cd01725 LSm2 The eukaryotic Sm 26.0 1.9E+02 0.0042 22.5 5.3 33 304-339 9-41 (81)
66 PRK12697 flgH flagellar basal 25.9 1.3E+02 0.0029 28.4 5.1 39 323-364 143-181 (226)
67 cd04479 RPA3 RPA3: A subfamily 25.9 2E+02 0.0044 23.3 5.7 32 304-347 13-44 (101)
68 PRK12701 flgH flagellar basal 25.7 1.4E+02 0.003 28.4 5.2 39 323-364 146-184 (230)
69 cd01720 Sm_D2 The eukaryotic S 25.5 2.7E+02 0.0058 22.3 6.1 37 300-339 8-44 (87)
70 PF02736 Myosin_N: Myosin N-te 24.0 2.4E+02 0.0052 19.1 6.3 40 307-350 2-41 (42)
71 PRK12788 flgH flagellar basal 23.5 1.5E+02 0.0033 28.1 5.1 39 323-364 151-189 (234)
72 PF03983 SHD1: SLA1 homology d 23.4 2.6E+02 0.0056 21.6 5.4 36 312-350 16-51 (70)
73 PF12945 YcgR_2: Flagellar pro 23.0 1.1E+02 0.0024 23.2 3.5 35 304-340 2-39 (87)
74 COG2063 FlgH Flagellar basal b 21.7 2E+02 0.0043 27.3 5.4 38 323-363 150-187 (230)
75 PF14326 DUF4384: Domain of un 21.1 3.9E+02 0.0085 20.5 6.6 35 304-341 4-38 (83)
76 PF08661 Rep_fac-A_3: Replicat 20.8 3.2E+02 0.0069 22.3 6.0 35 304-349 16-51 (109)
77 PF07076 DUF1344: Protein of u 20.4 1.9E+02 0.0041 21.8 4.0 25 324-349 7-31 (61)
No 1
>KOG1536 consensus Biotin holocarboxylase synthetase/biotin-protein ligase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.1e-62 Score=491.61 Aligned_cols=333 Identities=50% Similarity=0.865 Sum_probs=289.5
Q ss_pred hhhhccccccc---ccccccc--cCccccceEEEecCchhHHHH-------HHhhhcCCC-cCCCCCC-ceeEEeccccc
Q 017780 24 SLVSANTKPFR---LSASSAA--MDSNSSCMLVLSGKSLAENEI-------AESLKSNST-LKLPDNS-EVSIHLQSEIV 89 (366)
Q Consensus 24 ~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~-~~~~~~~~~~~ 89 (366)
.++..+.+++. ..+.++. .+....|++++|+.++++.|+ ++.+.++++ ++.||+. ++.|.+.+|..
T Consensus 281 ~~~~~n~~~~~r~~~k~~a~~l~~d~k~~~sl~~~~~~s~~tei~d~~~~~~~~ld~s~~~~k~~D~s~k~~i~~~~E~d 360 (649)
T KOG1536|consen 281 ILLFRNLKPLKRLSEKLLASALECDSKASCSLVLCGFSSAETEIKDTNKEFLKGLDNSNSKLKSPDNSVKFVIILGSEED 360 (649)
T ss_pred hhhhcccchHHHHHHHHHHhhhccccccCceeEEeeccccchhhhhhHHHHHHhhhhhhhhccCCCcceeEEEEeccccc
Confidence 46677766654 3334443 334689999999999999998 888877766 9999998 99999988863
Q ss_pred -----cCCCCCHHHHHhhcccccCCceEEEcccCCCHHHHHHHhccCCC--CceEEEeCcccCCccCCCCeeecCCCCce
Q 017780 90 -----KQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELP--VGAVCVADVQFKGRGRSKNAWESPKGCLM 162 (366)
Q Consensus 90 -----~~~~f~~~~~~~~L~t~~~g~~li~~~~v~STn~~a~~~~~~~~--~g~vviA~~QTaGRGR~GR~W~Sp~G~L~ 162 (366)
..+.||.+.|++.|.++++|+.++|.|.++||++++..+..++| .|.+|+|..||+||||.||.|.||.|+++
T Consensus 361 i~~~~~s~nFdl~lY~k~i~tk~~G~~ll~a~V~tST~~ild~n~s~lpse~g~vvv~~~Q~sGRGRGgN~WlsP~G~~~ 440 (649)
T KOG1536|consen 361 ILVADDSPNFDLELYFKSINTKRFGRVLLWAPVLTSTMDILDHNFSELPSEVGLVVVANIQTSGRGRGGNVWLSPKGCAM 440 (649)
T ss_pred cccccCCCCcCHHHHHHHhhhhccCceEEEEeecchHHHHHhhhhhcCCcccceEEEEeEEeecccCCCCeeecCcceEe
Confidence 46889999999999999999999999999999999998887777 79999999999999999999999999999
Q ss_pred eeeeeeccCC----CCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECC-EEEEEEeeeeeccCCcceEEE
Q 017780 163 FSFTIQMEDG----RVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNG-IKVGGILCTSTYRTKKFNVSI 237 (366)
Q Consensus 163 fSl~l~~~~~----~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~g-kKlgGILiE~~~~~~~~~vvI 237 (366)
||+.+.++.. ..+|.+++++.+|+.++++.. .|+|+++++||||||||+++ .|||||||.+.+.++.++++|
T Consensus 441 ~sf~ism~~ksr~~~~i~~~~~l~~~~~v~~~~~~---pGy~dIpvrIKWPNDlY~~~~lKvgGiLv~st~r~n~f~v~i 517 (649)
T KOG1536|consen 441 SSFTISMPLKSRVVPLIPFVQHLALVAVVEAVRYA---PGYPDIPVRIKWPNDLYVNGYLKVGGILVTSTYRSNKFNVSI 517 (649)
T ss_pred EEEEEEeecccccccchHHHHHHHHHHHHHHHhcC---CCCCCCceeeecCccceeeeccccceEEEEeeecCceEEEEE
Confidence 9999987632 245555666666666666543 58999999999999999999 999999999999999999999
Q ss_pred eeeccCCCCCCcchHHHHHHhhhcCCC----CCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCEEEEEE
Q 017780 238 GIGLNVNNEEPTTCLNAVLRKLSDSTY----QFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQE 313 (366)
Q Consensus 238 GIGINvn~~~p~t~l~~~l~~~~~~~~----~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~ 313 (366)
||||||.+..|++|||+.+.++++... .+.+|+|++.+++.|+.++..|+++||+.++..|+++|+|.+|+|.+.+
T Consensus 518 GCGiNVtN~~PT~cLN~ll~~~n~e~~~~~l~~k~EkLiA~~~n~fe~~~k~f~d~G~~silp~YYeyWLHS~Q~V~L~d 597 (649)
T KOG1536|consen 518 GCGINVTNDGPTTCLNDLLDEMNEERNLLHLAIKAEKLIAAVFNKFEKYFKLFMDQGPKSILPLYYEYWLHSNQRVILED 597 (649)
T ss_pred eeeeEecCCCCceeHHHHHHhhchhhccccchhhHHHHHHHHHHHHHHHHHHHHhhCHHhHhHHHHHHHhccCcEEeccC
Confidence 999999999999999999888775432 3589999999999999999999999999999999999999999999988
Q ss_pred CCccEEEeeeEEEEEECCCceEEEEeC------CCcEEEEcCCCeeEEeecCeecccc
Q 017780 314 KNEDQVVENVVTIQGLTSSGYLLAIGD------DNQMCELHPDGNSLDFFKGLIRRKL 365 (366)
Q Consensus 314 ~~~~~~~~~~G~i~GId~~G~Llv~~~------dG~~~~l~~dg~S~d~~~gli~~k~ 365 (366)
.++. .++.|+|+.|+|+++.. +++++++|||||+||||++||++|+
T Consensus 598 ~~e~------vii~~~dD~G~L~~~~~~~~~~~t~kv~~l~PDGNtFDmmknLI~~K~ 649 (649)
T KOG1536|consen 598 KGEA------VIIGGTDDIGFLQVSGLLLAVGDTNKVYELHPDGNTFDMMKNLIRHKY 649 (649)
T ss_pred CCcc------eEEeeeecccceeeehhcccCCCCCceEEEcCCCcHHHHHHHhhccCC
Confidence 7643 35788999999999854 4599999999999999999999996
No 2
>PRK06955 biotin--protein ligase; Provisional
Probab=100.00 E-value=1.5e-55 Score=427.98 Aligned_cols=258 Identities=25% Similarity=0.308 Sum_probs=211.9
Q ss_pred CCCCHHHHHhhcccccCCceEEEcccCCCHHHHHHHhccC-------CCCceEEEeCcccCCccCCCCeeecCCC-Ccee
Q 017780 92 ESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCE-------LPVGAVCVADVQFKGRGRSKNAWESPKG-CLMF 163 (366)
Q Consensus 92 ~~f~~~~~~~~L~t~~~g~~li~~~~v~STn~~a~~~~~~-------~~~g~vviA~~QTaGRGR~GR~W~Sp~G-~L~f 163 (366)
=.++.+.+...+++..++..++++++++|||+++++.... .++|+||+|++||+||||+||+|+||+| +|||
T Consensus 15 ~~l~~~~i~~~~~~~~~~~~i~~~~~v~STN~~a~~~~~~~~~~~~~~~~g~vvvA~~QTaGRGR~GR~W~Sp~G~~L~~ 94 (300)
T PRK06955 15 WRIDRDRLDAHLAAAARAWPLEIVEETGSTNADLMARLKALPRSADALPAPIVRVAYEQTAGRGRQGRPWFAQPGNALLF 94 (300)
T ss_pred CCCCHHHHHhhcccccCCceEEEEeCCCCHHHHHHHHHHhcccccccCCCCeEEEECccccCCCCCcCcccCCCCCcEEE
Confidence 4589999999997776788999999999999999765321 4789999999999999999999999999 5999
Q ss_pred eeeeecc-CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCCc-ceEEEeeec
Q 017780 164 SFTIQME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKK-FNVSIGIGL 241 (366)
Q Consensus 164 Sl~l~~~-~~~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~-~~vvIGIGI 241 (366)
|+++++. +...++.+++++|+||+++|+++.... +.+++||||||||++||||||||+|....++. ..+||||||
T Consensus 95 Si~l~~~~~~~~~~~Lsl~~glAv~~al~~~~~~~---~~~~~iKWPNDIl~~gkKiaGILiE~~~~~~~~~~vVIGIGI 171 (300)
T PRK06955 95 SVACVLPRPVAALAGLSLAVGVALAEALAALPAAL---GQRIALKWPNDLLIAGRKLAGILIETVWATPDATAVVIGIGL 171 (300)
T ss_pred EeEecCCCChHHhhhHHHHHHHHHHHHHHHhhccc---CCceeeeCCceeeECCcEEEEEEEEcccCCCCccEEEEEEEE
Confidence 9999875 345677899999999999999874221 24799999999999999999999998876554 469999999
Q ss_pred cCCCCCC----cchHHH-------H--HHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCE
Q 017780 242 NVNNEEP----TTCLNA-------V--LRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQR 308 (366)
Q Consensus 242 Nvn~~~p----~t~l~~-------~--l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~ 308 (366)
||++.++ .++++. . ...+...+..++|+++++.++++|+++|..|.+.||+.+.++|++++++.|++
T Consensus 172 Nv~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 251 (300)
T PRK06955 172 NVRRADAVAAEVDALRAREAALARGLPPVALAAACAGANLTDTLAAALNALAPALQAFGADGLAPFAARWHALHAYAGRE 251 (300)
T ss_pred eeCCCccccccccccccccccccccccchhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCe
Confidence 9997532 111110 0 00011124678999999999999999999999999999999999999999999
Q ss_pred EEEEECCccEEEeeeEEEEEECCCceEEEEeCCCcEEEEcCCCeeEEe
Q 017780 309 VIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDF 356 (366)
Q Consensus 309 V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S~d~ 356 (366)
|++...++. .+ .|+++|||++|+|+|++++| .+.+..+++++..
T Consensus 252 V~v~~~~~~-~~--~G~~~gId~~G~L~v~~~~g-~~~~~sGeV~~~~ 295 (300)
T PRK06955 252 VVLLEDGAE-LA--RGVAHGIDETGQLLLDTPAG-RQAIAAGDVSLRE 295 (300)
T ss_pred EEEEECCCc-EE--EEEEeeECCCceEEEEeCCC-eEEEEEEEEEEec
Confidence 999765433 23 39999999999999998888 5788889888754
No 3
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region. The protein name suggests that this enzyme transfers biotin only to acetyl-CoA-carboxylase but it also transfers the biotin moiety to other proteins. The apparent orthologs among the eukaryotes are larger proteins that contain a single copy of this domain.
Probab=100.00 E-value=1.5e-55 Score=414.45 Aligned_cols=231 Identities=29% Similarity=0.454 Sum_probs=195.1
Q ss_pred EEEcccCCCHHHHHHHhccC-CCCceEEEeCcccCCccCCCCeeecCCCCceeeeeeecc-CCCCcchhHHHHHHHHHHH
Q 017780 112 LIWSPRLPSTHDVVSHNFCE-LPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQME-DGRVVPLLQYVASLALTEA 189 (366)
Q Consensus 112 li~~~~v~STn~~a~~~~~~-~~~g~vviA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~-~~~~~~~ls~~~glAV~~a 189 (366)
++++++++|||+++++++.. .+++++|+|++||+||||+||+|+||+|+||||++++++ +...++.+++++|+||++|
T Consensus 2 i~~~~~~~STn~~~~~~~~~~~~~~~vv~A~~QTaGRGR~gr~W~Sp~g~l~~S~~l~~~~~~~~~~~ls~~~~lAv~~a 81 (237)
T TIGR00121 2 VIVLDVIDSTNQYALELAKEGKLKGDLVVAEYQTAGRGRRGRKWLSPEGGLYFSLILRPDLPKSPAPGLTLVAGIAIAEV 81 (237)
T ss_pred EEEEeecCCHHHHHHHHHhcCCCCCeEEEEcccCCCCCCCCCcccCCCCceEEEEEECCCCChhHhhhhHHHHHHHHHHH
Confidence 67899999999999987643 458999999999999999999999999999999999875 3456788999999999999
Q ss_pred HHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCCc-ceEEEeeeccCCCCCCcchHHH-HHHhhhcCCCCCC
Q 017780 190 INYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKK-FNVSIGIGLNVNNEEPTTCLNA-VLRKLSDSTYQFR 267 (366)
Q Consensus 190 L~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~-~~vvIGIGINvn~~~p~t~l~~-~l~~~~~~~~~~~ 267 (366)
|+++. .+++||||||||++||||||||+|.....+. ..+||||||||+++.++..+.. +.+.....+..++
T Consensus 82 l~~~~-------~~~~iKWPNDI~~~~kKi~GIL~E~~~~~~~~~~vviGIGiNv~~~~~~~~~~~~a~sl~~~~~~~~~ 154 (237)
T TIGR00121 82 LKELG-------DQVQVKWPNDILLKDKKLGGILTELTGKENRADYVVIGIGINVQNRKPAESLREQAISLSEEAGIDLD 154 (237)
T ss_pred HHHhC-------CCCCCcCCceEEECCeEEEEEEEEcccCCCCcCEEEEEEEEccCCCCCchhhcccceehHHhhCCCCC
Confidence 99873 4699999999999999999999998765543 5699999999997644322221 1111112356899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeCCCcEEEE
Q 017780 268 REDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCEL 347 (366)
Q Consensus 268 r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l 347 (366)
|++|++.++++|+.+|..|.+++|+.+.++|++++++.|++|++...++. ++ |++.|||++|+|+|+ ++|.++.+
T Consensus 155 ~~~ll~~l~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~--~~--G~~~gI~~~G~L~v~-~~~~~~~~ 229 (237)
T TIGR00121 155 RGELIEGFLRNFEENLEWFEQEGIDEILSKWEKLSAHIGREVSLTTGNGE--IE--GIARGIDKDGALLLE-DGGGIKKI 229 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhhhccCCeEEEEeCCcE--EE--EEEEeECCCceEEEE-eCCeEEEE
Confidence 99999999999999999999999999999999999999999999876543 33 999999999999999 56778888
Q ss_pred cCCCeeE
Q 017780 348 HPDGNSL 354 (366)
Q Consensus 348 ~~dg~S~ 354 (366)
..+++++
T Consensus 230 ~sGev~~ 236 (237)
T TIGR00121 230 ISGEISL 236 (237)
T ss_pred EEEEEEE
Confidence 8888875
No 4
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]
Probab=100.00 E-value=7.6e-55 Score=409.29 Aligned_cols=232 Identities=30% Similarity=0.477 Sum_probs=201.5
Q ss_pred cccCCCHHHHHHHhcc-CCCCceEEEeCcccCCccCCCCeeecCCC-CceeeeeeeccC-CCCcchhHHHHHHHHHHHHH
Q 017780 115 SPRLPSTHDVVSHNFC-ELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFTIQMED-GRVVPLLQYVASLALTEAIN 191 (366)
Q Consensus 115 ~~~v~STn~~a~~~~~-~~~~g~vviA~~QTaGRGR~GR~W~Sp~G-~L~fSl~l~~~~-~~~~~~ls~~~glAV~~aL~ 191 (366)
+++++|||++|++++. +.+.+++|+|++||+||||+||+|+||+| +||||+++++.. ...++.+++++|+||++||+
T Consensus 1 ~~~i~STn~~a~~~~~~~~~~~~vvvA~~QTaGRGR~GR~W~Sp~G~~l~~S~~l~~~~~~~~~~~lsl~~g~av~~al~ 80 (238)
T COG0340 1 FDEIDSTNTEAKERAASGAPEGTVVVAEEQTAGRGRRGRKWSSPKGGGLYMSLLLRPDLPPAELPSLSLVAGLAVAEALR 80 (238)
T ss_pred CCccchHHHHHHHHHHhCCCCCcEEEEeeeccCcCCCCCcccCCCCCCEEEEEEEcCCcChhhcchhHHHHHHHHHHHHH
Confidence 4789999999998874 57788899999999999999999999998 899999999874 46789999999999999999
Q ss_pred HhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCC-cceEEEeeeccCCCCCCcc-hHHHHHHhhhcCCCCCCHH
Q 017780 192 YVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTK-KFNVSIGIGLNVNNEEPTT-CLNAVLRKLSDSTYQFRRE 269 (366)
Q Consensus 192 ~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~-~~~vvIGIGINvn~~~p~t-~l~~~l~~~~~~~~~~~r~ 269 (366)
++. .+++||||||||++|||+||||+|+....+ ...+||||||||++..|+. .+......+......++|+
T Consensus 81 ~~~-------~~~~iKWPNDv~~~~kKl~GIL~E~~~~~~~~~~~viGIGINv~~~~~~~~~i~~~atsL~~~~~~~~r~ 153 (238)
T COG0340 81 KFG-------IDVRIKWPNDVLLNGKKLAGILVEAVGDENGLLAVVVGIGINVNNPPPDFEDIGQPATSLQEEGEEIDRE 153 (238)
T ss_pred HhC-------cccCccCCcceeECCcceEEEEEeeeecCCCceEEEEEEEEeeccCCcchhhhhhhhhhHHhhhCCCCHH
Confidence 973 579999999999999999999999987655 4579999999999976541 2222222222222579999
Q ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeCCCcEEEEcC
Q 017780 270 DVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHP 349 (366)
Q Consensus 270 ~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~~ 349 (366)
+|++.++++|+.+|..|.+.++.+++++|+++++++|++|++..+++. +.. |++.|||++|+|+++.++|.++.+.+
T Consensus 154 ~l~~~ll~~l~~~~~~~~~~~~~~i~~~~~~~~~~~g~~V~~~~~~~~-~~g--g~a~~id~~G~L~l~~~~g~~~~~~~ 230 (238)
T COG0340 154 ELLAKLLKELEKYLRQFLREGFAPILARWRARSLSLGKEVRLTLGGGV-IFG--GIAKGIDEDGALLLETDDGEVQTIYS 230 (238)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhccCCCEEEEEeCCCc-Eee--eEEEEECCCceEEEEeCCCeEEEEec
Confidence 999999999999999999999999999999999999999999988754 222 69999999999999999999999999
Q ss_pred CCeeEEe
Q 017780 350 DGNSLDF 356 (366)
Q Consensus 350 dg~S~d~ 356 (366)
|++||+.
T Consensus 231 Gev~~~~ 237 (238)
T COG0340 231 GEVSLRR 237 (238)
T ss_pred cEEEeec
Confidence 9999874
No 5
>PRK08330 biotin--protein ligase; Provisional
Probab=100.00 E-value=1.9e-54 Score=406.81 Aligned_cols=234 Identities=27% Similarity=0.387 Sum_probs=196.7
Q ss_pred CCceEEEcccCCCHHHHHHHhccCCCCceEEEeCcccCCccCCCCeeecCCCCceeeeeeecc-CCCCcchhHHHHHHHH
Q 017780 108 FGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQME-DGRVVPLLQYVASLAL 186 (366)
Q Consensus 108 ~g~~li~~~~v~STn~~a~~~~~~~~~g~vviA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~-~~~~~~~ls~~~glAV 186 (366)
+|+.++++++++|||+++++.....++|++|+|++||+||||+||+|+||+|+||||++++++ .+..++.+++++|+||
T Consensus 1 ~g~~i~~~~~v~STn~~~~~~~~~~~~~~vv~A~~QT~GrGR~gr~W~Sp~G~l~~S~~l~~~~~~~~~~~l~~~~~~av 80 (236)
T PRK08330 1 IGRNIIYFDEVDSTNEYAKRIAPDEEEGTVIVADRQTAGHGRKGRAWASPEGGLWMSVILKPKVSPEHLPKLVFLGALAV 80 (236)
T ss_pred CCceEEEEcccCcHHHHHHHHhcCCCCCEEEEECccccCCCCCCCeeeCCCCCeEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 378899999999999999987666789999999999999999999999999999999999875 3345778999999999
Q ss_pred HHHHHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCCcceEEEeeeccCCCCCCcchHHHHHHhhhcCCCCC
Q 017780 187 TEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQF 266 (366)
Q Consensus 187 ~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~~~vvIGIGINvn~~~p~t~l~~~l~~~~~~~~~~ 266 (366)
+++|+++ | .++++|||||||++|||+||||+|... ..++||||||++++.|......+.+.....+..+
T Consensus 81 ~~~l~~~----g---~~~~iKWPNDI~~~~kKi~GILiE~~~----~~~viGiGiNv~~~~p~~l~~~atsL~~~~~~~~ 149 (236)
T PRK08330 81 VDTLREF----G---IEGKIKWPNDVLVNYKKIAGVLVEGKG----DFVVLGIGLNVNNEIPDELRETATSMKEVLGREV 149 (236)
T ss_pred HHHHHHc----C---CCccccCCCeEEECCeEEEEEeEEEeC----CEEEEEEEEecCCCCCcccccccccHHHhhCCCC
Confidence 9999985 2 468999999999999999999999763 2689999999997555321111111111124678
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeCCCcEEE
Q 017780 267 RREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCE 346 (366)
Q Consensus 267 ~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~ 346 (366)
+++++++.++++|+.+|..|.+++ ..+.++|++++++.|++|++..+++. .. .|++.|||++|+|+|++++|+++.
T Consensus 150 ~~~~l~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~~v~~~~~~~~-~~--~G~~~gI~~~G~L~v~~~~g~~~~ 225 (236)
T PRK08330 150 PLIEVFKRLVENLDRWYKLFLEGP-GEILEEVKGRSMILGKRVKIIGDGEI-LV--EGIAEDIDEFGALILRLDDGTVKK 225 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHhcCCeEEEEECCcE-EE--EEEEEEECCCCEEEEEECCCCEEE
Confidence 999999999999999999998765 78999999999999999999875432 22 399999999999999999999989
Q ss_pred EcCCCeeEEe
Q 017780 347 LHPDGNSLDF 356 (366)
Q Consensus 347 l~~dg~S~d~ 356 (366)
+..+++++.+
T Consensus 226 ~~~gev~~~~ 235 (236)
T PRK08330 226 VLYGDVSLRF 235 (236)
T ss_pred EEEEEEEEec
Confidence 9999998753
No 6
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=100.00 E-value=1.2e-52 Score=410.54 Aligned_cols=250 Identities=26% Similarity=0.399 Sum_probs=209.0
Q ss_pred CCCCHHHHHhhcccccCCceEEEcccCCCHHHHHHHhccCCCCceEEEeCcccCCccCCCCeeecCCC-Cceeeeeeecc
Q 017780 92 ESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFTIQME 170 (366)
Q Consensus 92 ~~f~~~~~~~~L~t~~~g~~li~~~~v~STn~~a~~~~~~~~~g~vviA~~QTaGRGR~GR~W~Sp~G-~L~fSl~l~~~ 170 (366)
..+++..+...+. +..++++++++|||+++++.+.+.++++||+|++||+||||+||+|+||+| |||||++++++
T Consensus 64 ~~l~~~~l~~~l~----~~~i~~~~~v~STn~~~~e~~~~~~~~~vv~A~~Qt~GrGR~gr~W~Sp~g~~L~~S~~~~~~ 139 (319)
T PRK11886 64 DLLDPERISSQLP----PGRVTVLPVIDSTNQYLLDRIAELKSGDLCLAEYQTAGRGRRGRQWFSPFGGNLYLSLYWRLN 139 (319)
T ss_pred ccCCHHHHHhhCC----CCeEEEEeCCCCHHHHHHHhhcCCCCCcEEEECccCCCCCCCCCcccCCCCCCEEEEEEeCCC
Confidence 6688888776653 577899999999999998877667899999999999999999999999999 69999999876
Q ss_pred -CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCC-cceEEEeeeccCCCCCC
Q 017780 171 -DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTK-KFNVSIGIGLNVNNEEP 248 (366)
Q Consensus 171 -~~~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~-~~~vvIGIGINvn~~~p 248 (366)
+...++.+++++|+||++||+++. ..+++||||||||++|+|+||||+|.....+ ...+|||||||||++.+
T Consensus 140 ~~~~~~~~l~l~~~~av~~al~~~~------~~~~~iKWPNDI~~~~kKl~GIL~E~~~~~~~~~~~viGIGiNv~~~~~ 213 (319)
T PRK11886 140 QGPAQAMGLSLVVGIAIAEALRRLG------AIDVGLKWPNDIYLNDRKLAGILVELSGETGDAAHVVIGIGINVAMPDF 213 (319)
T ss_pred CChHHHhhHHHHHHHHHHHHHHHhc------CCCcceeCCceeeECCeeEEEEEEEeccCCCCccEEEEEEEEccCCCCC
Confidence 344677899999999999999874 2478999999999999999999999876544 35799999999997532
Q ss_pred cch-HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCEEEEEECCccEEEeeeEEEE
Q 017780 249 TTC-LNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQ 327 (366)
Q Consensus 249 ~t~-l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~ 327 (366)
... +......+...+..+++++|++.++++|+.+|..|.+.+|+++.++|++++++.|+.|++..+++. ++ |++.
T Consensus 214 ~~~~~~~~~~sl~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~--G~~~ 289 (319)
T PRK11886 214 PEELIDQPWSDLQEAGPTIDRNQLAAELIKQLRAALELFEQEGLAPFLERWKKLDLFLGREVKLIIGDKE--IS--GIAR 289 (319)
T ss_pred chhhhccceeeHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccccCCeEEEEeCCcE--EE--EEEE
Confidence 211 211111122225689999999999999999999999999999999999999999999999876542 33 9999
Q ss_pred EECCCceEEEEeCCCcEEEEcCCCeeEEe
Q 017780 328 GLTSSGYLLAIGDDNQMCELHPDGNSLDF 356 (366)
Q Consensus 328 GId~~G~Llv~~~dG~~~~l~~dg~S~d~ 356 (366)
|||++|.|+|+ ++|.+..+..+++++..
T Consensus 290 gi~~~G~L~i~-~~g~~~~~~~gev~~~~ 317 (319)
T PRK11886 290 GIDEQGALLLE-DDGVEKPFNGGEISLRS 317 (319)
T ss_pred EECCCceEEEE-eCCcEEEEEEeEEEEec
Confidence 99999999999 67888889999888743
No 7
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional
Probab=100.00 E-value=3e-52 Score=401.93 Aligned_cols=237 Identities=23% Similarity=0.358 Sum_probs=193.6
Q ss_pred cCCceEEEcccCCCHHHHHHHhc----c-CC--CCce-EEEeCcccCCccCC------CCeeecCCCCceeeeeeecc--
Q 017780 107 RFGRLLIWSPRLPSTHDVVSHNF----C-EL--PVGA-VCVADVQFKGRGRS------KNAWESPKGCLMFSFTIQME-- 170 (366)
Q Consensus 107 ~~g~~li~~~~v~STn~~a~~~~----~-~~--~~g~-vviA~~QTaGRGR~------GR~W~Sp~G~L~fSl~l~~~-- 170 (366)
.+|..++++++++|||++|+++. . +. ++++ ||+|++||+||||+ ||+|+||+|+||||++++++
T Consensus 14 ~~~~~~~~~~~v~STN~~a~~~~~~~~~~g~~~~~~~~vv~A~~QT~GRGR~~~~~~~gR~W~Sp~G~L~~S~~l~~~~~ 93 (285)
T PTZ00275 14 ELNALRLHFDVLDSTQLYCKRNMKRFIQNGKLQDDNMIIVSCNEQTNGIGTRDTKKNQDRIWLSEKGNLFTTFVFLWNRN 93 (285)
T ss_pred hcCcEEEEEcccCcHHHHHHHhHHHHhhcCCcCCCCeEEEEECcccCCCCcCCCCCCCCCEEECCCCceEEEEEEecCCc
Confidence 46889999999999999998853 1 22 4665 66799999999997 99999999999999999753
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccC------C-cceEEEeeeccC
Q 017780 171 DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRT------K-KFNVSIGIGLNV 243 (366)
Q Consensus 171 ~~~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~------~-~~~vvIGIGINv 243 (366)
.....+.+++++|+||+++|+.+ + .+++||||||||++||||||||+|..... + ...+||||||||
T Consensus 94 ~~~~~~~Lsl~~alAv~~~L~~~----~---~~~~IKWPNDI~~~~kKiaGILiE~~~~~~~~~~~~~~~~vViGIGINv 166 (285)
T PTZ00275 94 DIEKVKYLAQTCTVAISKTLEYF----H---LVTQIKWINDVLVNYKKIAGCLVHLYYLDDFPNLNSRYVCVMVGIGINV 166 (285)
T ss_pred CHhHhHHHHHHHHHHHHHHHHHh----C---CceeEECCCccccCCcEEEEEEEeeeeccccccccCceeEEEEEEEEec
Confidence 33557789999999999999985 2 47999999999999999999999987532 2 346999999999
Q ss_pred CCCCC-------cchHHHHHHh-hhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCEEEEEECC
Q 017780 244 NNEEP-------TTCLNAVLRK-LSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKN 315 (366)
Q Consensus 244 n~~~p-------~t~l~~~l~~-~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~ 315 (366)
|+..+ .+++...... ........++++|++.++++|+.+|..|...||+.+.++|+++++++||.|++..++
T Consensus 167 n~~~~~~~~~~~atSL~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~~~~~~g~~~i~~~~~~~~~~~g~~V~v~~~~ 246 (285)
T PTZ00275 167 TLEDKHNLLNNNYTSIKKELQRDFNTPKSIPSVEQVTEKLIINLKAVINKLRKEGFSSFLDYITPRLLYKDKKVLIDQDN 246 (285)
T ss_pred CCCCCcccccCCcccHHHHhCcccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccCCCEEEEEeCC
Confidence 97532 2344332110 000112457999999999999999999999999999999999999999999998765
Q ss_pred ccEEEeeeEEEEEECCCceEEEEeCCCcEEEEcCCCeeE
Q 017780 316 EDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSL 354 (366)
Q Consensus 316 ~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S~ 354 (366)
+ .++ |++.|||++|.|+|++++|.+..+.+|++++
T Consensus 247 ~--~~~--G~~~gId~~G~L~i~~~~G~~~~~~sGev~~ 281 (285)
T PTZ00275 247 E--LIV--GYLQGLLHDGSLLLLREKNKLVRVNTGHLRL 281 (285)
T ss_pred C--EEE--EEEEEECCCCeEEEEeCCCCEEEEEEEEEEE
Confidence 3 233 9999999999999999999988888888775
No 8
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=100.00 E-value=3e-51 Score=428.53 Aligned_cols=253 Identities=24% Similarity=0.345 Sum_probs=209.8
Q ss_pred CCCCCHHHHHhhcccccCCceEEEcccCCCHHHHHHHhcc---CCCCceEEEeCcccCCccCCCCeeecCCC-Cceeeee
Q 017780 91 QESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFC---ELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFT 166 (366)
Q Consensus 91 ~~~f~~~~~~~~L~t~~~g~~li~~~~v~STn~~a~~~~~---~~~~g~vviA~~QTaGRGR~GR~W~Sp~G-~L~fSl~ 166 (366)
.+.+|.+.+...|.+. +..+.++++++|||+++++.+. ..++|+||+|++||+||||+||+|+||+| |||||++
T Consensus 65 ~~lL~~~~I~~~l~~~--~~~i~~~~~idSTN~~~~~~~~~~~~~~~g~vvvAe~QTaGRGRrGR~W~Sp~G~~Ly~S~~ 142 (592)
T PRK13325 65 LAVFDAEGLRELGERS--GFQTALKHECASSNDEILELARIAPDKAHKTICVTHLQSKGRGRQGRKWSHRLGECLMFSFG 142 (592)
T ss_pred cccCCHHHHHHhhhcC--CCcEEEEeCCCCHHHHHHHHHhhccCCCCCeEEEECccCCCCCCCCCcccCCCCCcEEEEee
Confidence 4779999999999644 6789999999999999998643 25789999999999999999999999999 6999999
Q ss_pred eecc-CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCCcceEEEeeeccCCC
Q 017780 167 IQME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNN 245 (366)
Q Consensus 167 l~~~-~~~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~~~vvIGIGINvn~ 245 (366)
++++ ....++.+++++|+||+++|+++ | .+++||||||||++||||||||+|....++..++||||||||+.
T Consensus 143 l~~~~~~~~~~~Lsl~vgvAv~~aL~~~----g---~~v~lKWPNDIl~~gkKlaGILiE~~~~~~~~~vVIGIGINv~~ 215 (592)
T PRK13325 143 WVFDRPQYELGSLSPVAAVACRRALSRL----G---LKTQIKWPNDLVVGRDKLGGILIETVRTGGKTVAVVGIGINFVL 215 (592)
T ss_pred ecCCCChhhhhhHHHHHHHHHHHHHHHc----C---CCceEeCcceEEECCceEEEEEEeeeecCCCcEEEEEEEEeeCC
Confidence 9876 34567889999999999999985 3 46999999999999999999999988544556799999999986
Q ss_pred CCC---cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCEEEEEECCccEEEee
Q 017780 246 EEP---TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVEN 322 (366)
Q Consensus 246 ~~p---~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~ 322 (366)
+.. ...+.. +.........++|+++++.++++|+..|..|.+.||+++.++|++++++.|++|++...++. .+
T Consensus 216 p~~~~~~~~~~s-L~~~~~~~~~~dr~~ll~~ll~~l~~~l~~~~~~g~~~~~~~w~~~~~~~gk~V~v~~~~~~-~~-- 291 (592)
T PRK13325 216 PKEVENAASVQS-LFQTASRRGNADAAVLLETLLAELDAVLLQYARDGFAPFVAEYQAANRDHGKAVLLLRDGET-VF-- 291 (592)
T ss_pred CcccccCcChHH-HHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCeEEEEeCCCc-EE--
Confidence 321 111111 11111112368999999999999999999999999999999999999999999999754433 23
Q ss_pred eEEEEEECCCceEEEEeCCCcEEEEcCCCeeEEee
Q 017780 323 VVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFF 357 (366)
Q Consensus 323 ~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S~d~~ 357 (366)
.|++.|||++|+|++++++|. ..+..|++|+...
T Consensus 292 ~Gi~~GId~~G~L~l~~~~g~-~~~~sGEVslr~~ 325 (592)
T PRK13325 292 EGTVKGVDGQGVLHLETAEGK-QTVVSGEISLRSD 325 (592)
T ss_pred EEEEEEECCCCEEEEEECCCe-EEEEEEeEEEeec
Confidence 399999999999999998886 6888999998653
No 9
>PTZ00276 biotin/lipoate protein ligase; Provisional
Probab=100.00 E-value=7.6e-51 Score=384.48 Aligned_cols=225 Identities=24% Similarity=0.328 Sum_probs=177.5
Q ss_pred CCceEEEcccCCCHHHHHHHhccC-CCCceEEEeCcccCCccCCCCeeecCCCCceeeeeeecc--CCCCcchhHHHHHH
Q 017780 108 FGRLLIWSPRLPSTHDVVSHNFCE-LPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQME--DGRVVPLLQYVASL 184 (366)
Q Consensus 108 ~g~~li~~~~v~STn~~a~~~~~~-~~~g~vviA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~--~~~~~~~ls~~~gl 184 (366)
.|..++++++++|||++|++.... ..+|++|+|++||+||||+||+|+||+|+||||++++++ +....+++++++|+
T Consensus 5 ~~~~i~~~~~v~STN~~ak~~~~~~~~~~~vviA~~QT~GRGR~gR~W~Sp~g~l~~S~~l~~~~~~~~~~~~lsl~~al 84 (245)
T PTZ00276 5 VPPNIHFVGEVTSTMDVARTMLAAAGGKPFAVLAESQTAGRGTGGRTWTSPKGNMYFTLCIPQKGVPPELVPVLPLITGL 84 (245)
T ss_pred CCceEEEEeCCCCHHHHHHHHHhcCCCCCeEEEECCCCCCCCCCCCcccCCCCCeEEEEEECCCccChhHhhHHHHHHHH
Confidence 577899999999999999987543 467899999999999999999999999999999999764 33456789999999
Q ss_pred HHHHHHHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCCcceEEEeeeccCCCCC--C-----cchHHHHHH
Q 017780 185 ALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEE--P-----TTCLNAVLR 257 (366)
Q Consensus 185 AV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~~~vvIGIGINvn~~~--p-----~t~l~~~l~ 257 (366)
|+++||++++. +.+++||||||||++|||+||||+|+..+ .+||||||||++.+ | .++++....
T Consensus 85 av~~al~~~~~-----~~~~~iKWPNDI~~~~kKiaGILiE~~~~----~vvIGIGINv~~~~~~~~~~~~~~~l~sl~~ 155 (245)
T PTZ00276 85 ACRAAIMEVLH-----GAAVHTKWPNDIIYAGKKIGGSLIESEGE----YLIIGIGMNIEVAPPVTDAGRESTMVNEIAE 155 (245)
T ss_pred HHHHHHHHhcc-----CCceEEEcCCeeEECCcEEEEEEEcccCC----EEEEEEEEeeCCCCCCCccccccccHHHHHH
Confidence 99999998742 35799999999999999999999997642 68999999999642 1 222222111
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH---HHhhcCCCEEEEEECCccEEEeeeEEEEEECCCce
Q 017780 258 KLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYY---KTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGY 334 (366)
Q Consensus 258 ~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~---~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~ 334 (366)
. .....++|++|++.++++|+.+|..+.. ++..+.+.|. .++...++.+. ..++. . .|++.|||++|+
T Consensus 156 ~--~~~~~~~r~~l~~~ll~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~--~G~~~gId~~G~ 226 (245)
T PTZ00276 156 D--LGVKSVTPQDLAEAVWKHFFDICSDPEL-TREILIESFDAAMDKSLKLHKRTP--TGRDP--E--ELTALSLNEWGH 226 (245)
T ss_pred h--hCCCCCCHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHhhhhccCeEEE--cCCcE--E--EEEEEEECCCCe
Confidence 1 0235689999999999999888865322 3457777776 66667776432 23222 2 389999999999
Q ss_pred EEEEeCCCcEEEEcCC
Q 017780 335 LLAIGDDNQMCELHPD 350 (366)
Q Consensus 335 Llv~~~dG~~~~l~~d 350 (366)
|+|++++|.++.+.+|
T Consensus 227 Lvv~~~~G~~~~~~~~ 242 (245)
T PTZ00276 227 LIVRRPDGTEEDLMAE 242 (245)
T ss_pred EEEEECCCCEEEEEhh
Confidence 9999999999888765
No 10
>PRK08477 biotin--protein ligase; Provisional
Probab=100.00 E-value=1.1e-48 Score=361.60 Aligned_cols=198 Identities=24% Similarity=0.376 Sum_probs=163.0
Q ss_pred eEEEcccCCCHHHHHHHhccC--CCCceEEEeCcccCCccCCCCeeecCCCCceeeeeeeccC-CCCcc--hhHHHHHHH
Q 017780 111 LLIWSPRLPSTHDVVSHNFCE--LPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMED-GRVVP--LLQYVASLA 185 (366)
Q Consensus 111 ~li~~~~v~STn~~a~~~~~~--~~~g~vviA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~~-~~~~~--~ls~~~glA 185 (366)
.++++++++|||+++++.... .+++++|+|++||+||||+||+|+||+|+||||++++++. +...+ .+++++|+|
T Consensus 2 ~i~~~~~v~STn~~~~~~~~~~~~~~~~vvvA~~QTaGRGR~gR~W~Sp~G~L~~S~~l~~~~~~~~~~~~~lsl~~~~a 81 (211)
T PRK08477 2 EIRVFESLDSTQTYLIEKIKNGELKAPFAIVAKEQTAGIGSRGNSWEGKKGNLFFSFALKESDLPKDLPLQSSSIYFGFL 81 (211)
T ss_pred eEEEecCCCCHHHHHHHHHHcCCCCCCEEEEECccCCCCCCCCCcccCCCCCeEEEeecCCCcchhhhhhHHHHHHHHHH
Confidence 578899999999999987642 4789999999999999999999999999999999998753 23333 378999999
Q ss_pred HHHHHHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCCcceEEEeeeccCCCCCCcchHHHHHHhhhcCCCC
Q 017780 186 LTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQ 265 (366)
Q Consensus 186 V~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~~~vvIGIGINvn~~~p~t~l~~~l~~~~~~~~~ 265 (366)
|+++|+++ | .+++||||||||++|||+||||+|...+ .+||||||||++.++. . .. .+..
T Consensus 82 v~~~l~~~----~---~~~~iKWPNDI~~~~kKi~GIL~E~~~~----~vviGiGiNv~~~p~~--~----~~---l~~~ 141 (211)
T PRK08477 82 LKEVLKEL----G---SKVWLKWPNDLYLDDKKIGGVITNKIKN----FIVCGIGLNLKFSPKN--F----AC---LDIE 141 (211)
T ss_pred HHHHHHHh----C---CCeEEcCCCeeEECCcEEEEEEEeecCC----eEEEEEEEeeCCCCCc--c----cc---ccCc
Confidence 99999984 2 4799999999999999999999997542 5899999999864321 1 01 1357
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 266 FRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 266 ~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
++|++|++.++++|+..|. ...+.++|+ .++..|+.|++..+++ .++ |++.|||++|+|+|+.
T Consensus 142 ~~~~~ll~~l~~~~~~~~~------~~~~~~~~~-~~~~~~~~v~v~~~~~--~~~--g~a~~I~~~G~L~v~~ 204 (211)
T PRK08477 142 ISDDLLLEGFLQKIEKKIL------WKQIFSKYK-LEFEKSKSFSFHIDGK--LVS--LKDAELLEDGSILING 204 (211)
T ss_pred CCHHHHHHHHHHHHHHHHh------HHHHHHHHH-HHHHcCCEEEEEECCE--EEE--EEEeeECCCCeEEECC
Confidence 8999999999999998873 245667788 6668999999987643 344 9999999999999974
No 11
>PRK05935 biotin--protein ligase; Provisional
Probab=100.00 E-value=2.1e-41 Score=308.53 Aligned_cols=161 Identities=23% Similarity=0.284 Sum_probs=127.4
Q ss_pred EEcccCCCHHHHHHHhcc-C-CCCceEEEeCcccCCccCCCCeeecCCCCceeeeeeeccCC-CCcchhHHHHHHHHHHH
Q 017780 113 IWSPRLPSTHDVVSHNFC-E-LPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDG-RVVPLLQYVASLALTEA 189 (366)
Q Consensus 113 i~~~~v~STn~~a~~~~~-~-~~~g~vviA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~~~-~~~~~ls~~~glAV~~a 189 (366)
+++++++|||+++++++. + .+++++|+|++||+||||+||+|+||+|+||||++++++.. .....+..++++|++++
T Consensus 6 ~~~~~v~STN~~~~~~~~~~~~~~~~vv~A~~QTaGRGR~GR~W~Sp~G~L~~Si~l~~~~~~~~~~~~~~l~~~av~~~ 85 (190)
T PRK05935 6 YEIAETPSTNTTAKEGMHLWDPYALTVISTREQTAGKGKFGKSWHSSDQDLLASFCFFITVLNIDVSLLFRLGTEAVMRL 85 (190)
T ss_pred EeCCCCCcHHHHHHHHHhcCCCCCCEEEEECccCCCCCCCCCeeeCCCCCeEEEEEEccCCCCcCHHHHHHHHHHHHHHH
Confidence 345899999999998753 2 34689999999999999999999999999999999975422 23344555677899999
Q ss_pred HHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCCcceEEEeeeccCCCCC--------CcchHHHHHHhhhc
Q 017780 190 INYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEE--------PTTCLNAVLRKLSD 261 (366)
Q Consensus 190 L~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~~~vvIGIGINvn~~~--------p~t~l~~~l~~~~~ 261 (366)
++++. ..+++||||||||+++||+||||+|....++...+||||||||++.+ +.+++.. .
T Consensus 86 l~~~~------~~~~~iKWPNDI~~~~kKi~GILiE~~~~~~~~~vVIGIGINv~~~~~~~~~~~~~atsL~~------~ 153 (190)
T PRK05935 86 GEDLG------ITEAVIKWPNDVLVHGEKLCGVLCETIPVKGGLGVILGIGVNGNTTKDELLGIDQPATSLQE------L 153 (190)
T ss_pred HHHhC------CccccccCCCeEEECCcEEEEEEEeccccCCCcEEEEEEeEecCCCchhccccCCCcccHHH------h
Confidence 98752 13699999999999999999999998765555579999999999741 1233322 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q 017780 262 STYQFRREDVIAAFFNKFETFYDT 285 (366)
Q Consensus 262 ~~~~~~r~~Ll~~ll~~~~~~~~~ 285 (366)
.+..++++++++.++++|+.+|..
T Consensus 154 ~~~~~~~~~l~~~l~~~l~~~~~~ 177 (190)
T PRK05935 154 LGHPIDLEEQRERLIKHIKHVLIQ 177 (190)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999887754
No 12
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organism probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine []. Lipoate-protein ligase A (LPLA) (octanoyltransferase) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes [].; GO: 0003824 catalytic activity, 0006464 protein modification process; PDB: 2ARU_A 2C8M_B 2C7I_A 3R07_A 2ARS_A 2ART_A 3FJP_A 3EFR_B 2EAY_B 3EFS_B ....
Probab=99.87 E-value=3.9e-22 Score=168.08 Aligned_cols=119 Identities=39% Similarity=0.573 Sum_probs=90.0
Q ss_pred cccCCCH-HHHHHHhccCCCCceEEEeCcccCCccCCCCeeecCCCCceeeeeeeccC----CCCcchhHHHHHHHHHHH
Q 017780 115 SPRLPST-HDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMED----GRVVPLLQYVASLALTEA 189 (366)
Q Consensus 115 ~~~v~ST-n~~a~~~~~~~~~g~vviA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~~----~~~~~~ls~~~glAV~~a 189 (366)
.++++|| .+...+ ..+.+.+++|++||+|| |.|+||+|+|+||++++++. ....+.+...+++++.++
T Consensus 2 g~~~~st~~~~~~~---~~~~~~v~v~~rqtgG~----~~w~~p~g~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (125)
T PF03099_consen 2 GYFQDSTKEELNQE---ELKEGGVPVARRQTGGR----RVWHSPPGNLYFSLILPPDDPNFPPSDIPSYILLAALAVLEA 74 (125)
T ss_dssp ETTBSHHHHHHHHH---HHHCTTEEEEEESSSSB----EEEEBTTTEEEEEEEEETTTTTHHGGGHHHHHHHHHHHHHHH
T ss_pred cCeECHHHHHHHHh---cCccCCEEEEEEeeCCc----ceeeeCCcEEEEEEEEccccccccchhhhHHHHHHHHHHHHH
Confidence 4678999 333322 34567889999999999 99999999999999998753 234555667777888888
Q ss_pred HHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCCcceEEEeeecc
Q 017780 190 INYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLN 242 (366)
Q Consensus 190 L~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~~~vvIGIGIN 242 (366)
+..+. .+.++..+.+||||||++++|||||||+|.........++||||+|
T Consensus 75 l~~~~--~~~~~~~~~~kw~nDi~~~~kKi~Gil~~~~~~~~~~~~~igig~N 125 (125)
T PF03099_consen 75 LGEFG--PGEPGIDCFIKWPNDIYVNGKKIAGILQERRRGGILHHGSIGIGIN 125 (125)
T ss_dssp HHHTT--HTTTTSSEEEETTTEEEETTEEEEEEEEEEETTEEEEEEEEESSEE
T ss_pred hhhhc--cccCCCceEEeCCCCccCCCcEEEEEeEeeeCCcEEEEEEEEEecC
Confidence 85221 0123568999999999999999999999998743334677888877
No 13
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=98.52 E-value=4e-07 Score=65.02 Aligned_cols=48 Identities=25% Similarity=0.380 Sum_probs=42.0
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeCCCcEEEEcCCCeeEE
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLD 355 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S~d 355 (366)
|+||+|++..+++. ++ |++.|||++|+|+|++++|++..+.+++.|+.
T Consensus 1 ~lG~~V~v~~~~~~--~~--G~~~gId~~G~L~v~~~~g~~~~i~sGdv~~r 48 (48)
T PF02237_consen 1 TLGQEVRVETGDGE--IE--GIAEGIDDDGALLVRTEDGSIRTISSGDVSLR 48 (48)
T ss_dssp STTSEEEEEETSCE--EE--EEEEEEETTSEEEEEETTEEEEEESSSEEEEE
T ss_pred CCCCEEEEEECCeE--EE--EEEEEECCCCEEEEEECCCCEEEEEEEEEEeC
Confidence 57999999996553 33 99999999999999999999999999998864
No 14
>PRK14348 lipoate-protein ligase B; Provisional
Probab=93.85 E-value=1.2 Score=41.94 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=74.6
Q ss_pred cCCCCeeecCCCCceeeeeeeccCCCCcchhHHH--HHHHHHHHHHHhhhcCCCCCCCceeEecCcEEEC-----CEEEE
Q 017780 148 GRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYV--ASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLN-----GIKVG 220 (366)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~--~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~-----gkKlg 220 (366)
.|.|...+--||.|..=.++..... ....--|+ .--++.++++++ |++ ..+.+..-.||++ ++|||
T Consensus 79 ~RGG~iTyHGPGQlV~Ypil~L~~~-~~~v~~yv~~lE~~vI~~l~~~----gi~--~~~~~~~~GVWv~~~~~~~~KIa 151 (221)
T PRK14348 79 DRGGDITYHGPGQLVCYPILNLEEF-GLGLKEYVHLLEEAVIRVCASY----GVV--AGRLEKATGVWLEGDTSRARKIC 151 (221)
T ss_pred CCCCceEEECCCeEEEEEEEEcccc-CCCHHHHHHHHHHHHHHHHHHc----CCc--eeecCCCCCEEecCCCCCCCcEE
Confidence 6889988899998666556654321 12222222 234666666664 442 2467788899997 58999
Q ss_pred EEeeeeeccCCcceEEEeeeccCCCCC--------------CcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 017780 221 GILCTSTYRTKKFNVSIGIGLNVNNEE--------------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFY 283 (366)
Q Consensus 221 GILiE~~~~~~~~~vvIGIGINvn~~~--------------p~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~ 283 (366)
.|=+-... ....=|+.|||+++. +.||+.+. .+..++.+++...+.++|.+.+
T Consensus 152 aIGv~v~r----~vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~~------~g~~~~~~~v~~~l~~~f~~~~ 218 (221)
T PRK14348 152 AIGVRSSH----YVTMHGLALNVNTDLRYFSYIHPCGFIDKGVTSLQQE------LGHSIDMAEVKERLGRELLAAL 218 (221)
T ss_pred EEeEEecc----ceeecceEEEecCChHHhccCccCCCCCCcEEeeHHH------hCCCCCHHHHHHHHHHHHHHHH
Confidence 87554321 112369999998751 23555432 2456788888888888887654
No 15
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=92.12 E-value=0.45 Score=47.18 Aligned_cols=64 Identities=22% Similarity=0.301 Sum_probs=41.9
Q ss_pred CCCeeecCCCCceeeeeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCEEEEEE
Q 017780 150 SKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGI 222 (366)
Q Consensus 150 ~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGI 222 (366)
.|..=+-.+|++.||++.+.+.. ..... ....-.+++||+++ | +++.+.=+|||.++|||++|.
T Consensus 73 GGGaVyhD~g~l~~s~i~~~~~~-~~~~~-~~~~~~i~~aL~~l----G---i~a~~~~rnDl~v~gkKisGs 136 (324)
T TIGR00545 73 GGGAVFHDLGNICFSFITPKDGK-EFENA-KIFTRNVIKALNSL----G---VEAELSGRNDLVVDGRKISGS 136 (324)
T ss_pred CCceEEEcCCceEEEEEEcCCcc-chhhH-HHHHHHHHHHHHHh----C---CCeEECCCceEEECCEEEEEE
Confidence 34445556689999998875311 11111 22334567777765 4 456666689999999999997
No 16
>PRK14342 lipoate-protein ligase B; Provisional
Probab=89.97 E-value=7.6 Score=36.37 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=69.6
Q ss_pred cCCCCeeecCCCCceeeeeeeccCCCCcchhHHHH--HHHHHHHHHHhhhcCCCCCCCceeE-ecCcEEECCEEEEEEee
Q 017780 148 GRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVA--SLALTEAINYVCSRDGLPCLDIKIK-WPNDLYLNGIKVGGILC 224 (366)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~~--glAV~~aL~~~~~~~G~~~~~v~IK-WPNDI~v~gkKlgGILi 224 (366)
.|.|...+--||.|..=.++..... ....--|+. --++.++++++ |+ +..-+ =.=-|+++++|||-|=+
T Consensus 70 ~RGG~iTyHGPGQLV~YpIl~L~~~-~~~~~~yv~~lE~~vi~~l~~~----gi---~~~~~~~~~GVWv~~~KIaaIGv 141 (213)
T PRK14342 70 DRGGQVTYHGPGQLVMYVLLDLKRL-KLGVRQLVTAIEQTVINTLAEY----GI---EAHAKPDAPGVYVDGKKIASLGL 141 (213)
T ss_pred cCCCceEEECCCeEEEEEEEEcccc-CCCHHHHHHHHHHHHHHHHHHc----CC---ceeecCCCCcCcccCCEEEEEEE
Confidence 6889989999998666556654321 122222222 23555666654 43 22111 11256777899998866
Q ss_pred eeeccCCcceEEEeeeccCCCCC--------------CcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 017780 225 TSTYRTKKFNVSIGIGLNVNNEE--------------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFY 283 (366)
Q Consensus 225 E~~~~~~~~~vvIGIGINvn~~~--------------p~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~ 283 (366)
-..- ....=|+.|||+++. ..||+.+ .+..++.+++...+.++|.+.|
T Consensus 142 ~v~r----~vT~HG~AlNv~~dL~~F~~IvPCGl~~~~vTSl~~-------~~~~~~~~~v~~~~~~~f~~~f 203 (213)
T PRK14342 142 RIRR----GCSFHGLALNVNMDLSPFLRINPCGYAGLEMTQLSD-------LGGPATVDEVAPRLLAELLALL 203 (213)
T ss_pred eEec----ceeecceeEecCCCchhhCcEecCCCCCCcEeeHHH-------hCCCCCHHHHHHHHHHHHHHHh
Confidence 5321 123479999999752 1345532 1346788888888888887765
No 17
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=89.06 E-value=12 Score=34.18 Aligned_cols=116 Identities=15% Similarity=0.172 Sum_probs=70.0
Q ss_pred cCCCCeeecCCCCceeeeeeeccCCCCcchhHHHHH--HHHHHHHHHhhhcCCCCCCCceeEecC--cEEECCEEEEEEe
Q 017780 148 GRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVAS--LALTEAINYVCSRDGLPCLDIKIKWPN--DLYLNGIKVGGIL 223 (366)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~~g--lAV~~aL~~~~~~~G~~~~~v~IKWPN--DI~v~gkKlgGIL 223 (366)
.|.|..++--||.|.+=.++..... ....-.|+.. -++.++++++ |+ +.. ..|. -||++++|||-|=
T Consensus 50 ~RGG~iTyHGPGQLV~YpIl~L~~~-~~~v~~yv~~lE~~~I~~l~~~----gi---~a~-~~~~~~GVWv~~~KIasIG 120 (184)
T TIGR00214 50 ERGGQVTYHGPGQQVMYVILDLKRF-QLDVRWLVTQLEQTVIITLAEL----GI---EGE-PIADATGVWVEGKKVASLG 120 (184)
T ss_pred CCCCeeEEECCCeEEEEEEEEchhc-CCCHHHHHHHHHHHHHHHHHHc----CC---ceE-EcCCCCeEEecCCEEEEEE
Confidence 4788888889998766666655321 2233333333 3666777664 43 221 2232 3677889999876
Q ss_pred eeeeccCCcceEEEeeeccCCCCC-------C-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 017780 224 CTSTYRTKKFNVSIGIGLNVNNEE-------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFY 283 (366)
Q Consensus 224 iE~~~~~~~~~vvIGIGINvn~~~-------p-------~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~ 283 (366)
+-... ....=|+.|||+++. | .||+.+. +..++.+++...+.++|.+.+
T Consensus 121 v~v~r----~vt~HG~ALNv~~dL~~F~~I~PCGl~~~~vTSl~~~-------~~~~~~~~v~~~~~~~f~~~f 183 (184)
T TIGR00214 121 IRVRR----GCTFHGLALNINMDLSPFSHINPCGYAGREMGSLNQF-------LPGATVENVAPLLIKAFAELL 183 (184)
T ss_pred EEEec----cEeecceEEEcCCCchHhccEEcCCCCCCcEeeHHHH-------cCCCCHHHHHHHHHHHHHHHh
Confidence 64321 123479999998751 1 2455321 246778888888888886654
No 18
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]
Probab=88.25 E-value=1.3 Score=42.16 Aligned_cols=74 Identities=23% Similarity=0.225 Sum_probs=48.8
Q ss_pred EEEeCcccCCccCCCCeeecCCCCceeeeeeeccCCCC-cchhHHHHHHHHHHHHHHhhhcCCCCCCC-ceeEecCcEEE
Q 017780 137 VCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRV-VPLLQYVASLALTEAINYVCSRDGLPCLD-IKIKWPNDLYL 214 (366)
Q Consensus 137 vviA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~~~~~-~~~ls~~~glAV~~aL~~~~~~~G~~~~~-v~IKWPNDI~v 214 (366)
+-++.+.|.|. .=+-..|++.||++.+.+.... .-...-...-.+.++++.+ | ++ ....=+|||.+
T Consensus 66 i~vvRR~sGGG-----aV~hd~g~l~~S~i~~~~~~~~~~~~~~~~~~~~~~~~l~~l----g---v~~~~~~~~nDl~v 133 (248)
T COG0095 66 IPVVRRPSGGG-----AVFHDLGNLNYSVITPDEGGLESYETLYKFLLQPVIDALRAL----G---VEGAECPGRNDLVV 133 (248)
T ss_pred CcEEEEcCCCc-----eEEecCCcEEEEEEECCCCccccHHHHHHHHHHHHHHHHHHc----C---CCeeccCCCcceeE
Confidence 55778888765 3445566999999997653211 1122223445666777665 3 34 55666799999
Q ss_pred CCEEEEEE
Q 017780 215 NGIKVGGI 222 (366)
Q Consensus 215 ~gkKlgGI 222 (366)
+||||+|+
T Consensus 134 ~gkKisG~ 141 (248)
T COG0095 134 DGKKISGS 141 (248)
T ss_pred cCcEEeeH
Confidence 99999996
No 19
>PRK14345 lipoate-protein ligase B; Provisional
Probab=86.31 E-value=18 Score=34.33 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=70.4
Q ss_pred cCCCCeeecCCCCceeeeeeeccCCCCcchhHHHH--HHHHHHHHHHhhhcCCCCCCCceeEecCcEEEC------CEEE
Q 017780 148 GRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVA--SLALTEAINYVCSRDGLPCLDIKIKWPNDLYLN------GIKV 219 (366)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~~--glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~------gkKl 219 (366)
.|.|-..+--||.|..=.++..... ...-.|+. --++.++++++ |++. .+.+=.=-||++ ++||
T Consensus 76 dRGG~iTyHGPGQLV~YpIldL~~~--~~v~~yv~~LE~~vI~~l~~~----gi~a--~~~~~~~GVWv~~~~~~~~~KI 147 (234)
T PRK14345 76 DRGGKITWHGPGQLVGYPIIKLAEP--LDVVDYVRRLEEALIAVCADL----GLNA--GRVDGRSGVWVPADGGRPDRKI 147 (234)
T ss_pred cCCCceeEeCCCeEEEEEEEecCCC--CCHHHHHHHHHHHHHHHHHHc----CCce--eecCCCCeEEECCCCCCCcceE
Confidence 6888888889998766556654331 22223333 33666777664 3321 111111245665 6899
Q ss_pred EEEeeeeeccCCcceEEEeeeccCCCCC--------------CcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 017780 220 GGILCTSTYRTKKFNVSIGIGLNVNNEE--------------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (366)
Q Consensus 220 gGILiE~~~~~~~~~vvIGIGINvn~~~--------------p~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~ 284 (366)
|-|=+-... ....=|+.|||+++. ..||+... .+..++.+++...+.++|.+.|.
T Consensus 148 aaIGv~v~r----~vT~HG~ALNV~~DL~~F~~IvPCGl~~~~vTSl~~~------~g~~~~~~~v~~~l~~~f~~~f~ 216 (234)
T PRK14345 148 AAIGIRVSR----GVTMHGFALNCDNDLAAFDAIVPCGISDAGVTTLSAE------LGRTVTVAEVVDPVAAALCDALD 216 (234)
T ss_pred EEEEeeecc----ceeecceEEEeCCChHHhceEEeCCCCCCcEEehhHh------hCCCCCHHHHHHHHHHHHHHHhC
Confidence 987664321 223579999999751 23555332 24567888888888888877654
No 20
>PRK14344 lipoate-protein ligase B; Provisional
Probab=85.82 E-value=21 Score=33.71 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=69.2
Q ss_pred cCCCCeeecCCCCceeeeeeeccCCCCcchhHHHH--HHHHHHHHHHhhhcCCCCCCCce-eEecCcEEECCEEEEEEee
Q 017780 148 GRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVA--SLALTEAINYVCSRDGLPCLDIK-IKWPNDLYLNGIKVGGILC 224 (366)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~~--glAV~~aL~~~~~~~G~~~~~v~-IKWPNDI~v~gkKlgGILi 224 (366)
.|.|...+--||.|..=.++..... ....-.|+. --++.++++++ |+ +.. .+=---||++++|||-|=+
T Consensus 88 ~RGG~iTyHGPGQLV~YpIl~L~~~-~~~v~~yv~~lE~~ii~~l~~~----gi---~~~~~~~~~GVWv~~~KIaaIGv 159 (223)
T PRK14344 88 DRGGEVTHHMPGQLVTYLVLDLRRF-NKDLNWYLRQLEQVLIDVLADL----GI---DGERLDGLTGVWIGNKKVASIGI 159 (223)
T ss_pred CCCceeeEECCCcEEEEEEEEcccc-CCCHHHHHHHHHHHHHHHHHHc----CC---ceeecCCCCcEEcCCCeEEEEeE
Confidence 5788888889998766666654321 111222222 23555666554 43 221 1111346778899998866
Q ss_pred eeeccCCcceEEEeeeccCCCCC--------------CcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 017780 225 TSTYRTKKFNVSIGIGLNVNNEE--------------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFY 283 (366)
Q Consensus 225 E~~~~~~~~~vvIGIGINvn~~~--------------p~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~ 283 (366)
-... ....=|+.|||+++. ..||+.+. +..++.+++...+.++|.+.|
T Consensus 160 ~v~r----~vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~~-------~~~~~~~~v~~~l~~~f~~~f 221 (223)
T PRK14344 160 GCRR----WITQHGFSLNVDCDLEGFNKIVPCGLEGCQVGRLSDW-------IPGLNIKEVKPLLKKSLQERF 221 (223)
T ss_pred eEec----ceeecceEEecCCCccccCcEEcCCCCCCcEeeHHHH-------cCCCCHHHHHHHHHHHHHHHh
Confidence 5331 123479999999752 12455321 346788888888888887654
No 21
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=83.84 E-value=3.9 Score=40.85 Aligned_cols=67 Identities=22% Similarity=0.255 Sum_probs=43.2
Q ss_pred EeCcccCCccCCCCeeecCCCCceeeeeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEEC---
Q 017780 139 VADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLN--- 215 (366)
Q Consensus 139 iA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~--- 215 (366)
++.+.|.| +.=+-..|++.||++.+.+. ... . ...-.|.+||+++ | +++.+.=.|||.++
T Consensus 68 vvRR~SGG-----GAVyhD~Gnl~~s~i~~~~~---~~~-~-~~~~~ii~aL~~l----G---i~a~~~~rnDi~v~~~~ 130 (338)
T PRK03822 68 LARRSSGG-----GAVFHDLGNTCFTFMAGKPE---YDK-T-ISTSIVLNALNSL----G---VSAEASGRNDLVVKTAE 130 (338)
T ss_pred EEEECCCC-----ceEEEcCCCcEEEEEeCCCc---cCH-H-HHHHHHHHHHHHc----C---CceeECCCccEEEecCC
Confidence 34555544 44444558999999885322 111 1 1234677888765 4 56778888999995
Q ss_pred -CEEEEEE
Q 017780 216 -GIKVGGI 222 (366)
Q Consensus 216 -gkKlgGI 222 (366)
|+|++|-
T Consensus 131 g~kKisGs 138 (338)
T PRK03822 131 GDRKVSGS 138 (338)
T ss_pred CCcEEEEE
Confidence 6999993
No 22
>PRK14343 lipoate-protein ligase B; Provisional
Probab=83.01 E-value=29 Score=33.05 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=70.1
Q ss_pred cCCCCeeecCCCCceeeeeeeccCCCCcchhHHH--HHHHHHHHHHHhhhcCCCCCCCcee-EecCcEEEC-----CEEE
Q 017780 148 GRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYV--ASLALTEAINYVCSRDGLPCLDIKI-KWPNDLYLN-----GIKV 219 (366)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~--~glAV~~aL~~~~~~~G~~~~~v~I-KWPNDI~v~-----gkKl 219 (366)
.|.|...+--||.|..=.++..... ....-.|+ .--++.++++++ |+ +..- +=.--||++ ++||
T Consensus 80 dRGG~iTyHGPGQLV~YpIl~L~~~-~~~v~~yv~~lE~~vI~~l~~~----gi---~~~~~~~~~GVwv~~~~~~~~KI 151 (235)
T PRK14343 80 DRGGQITYHGPGQVVAYLLLDLRRR-KLMVRELVTRIEQAVIDTLAAY----NL---ASERKAGAPGIYVASGPHQGAKI 151 (235)
T ss_pred CCCCceeEeCCCeEEEEEEEEcccc-CCCHHHHHHHHHHHHHHHHHHc----CC---ceeecCCCCeEEEeCCCCCCCeE
Confidence 7889988888998666556654321 12222233 333666777664 33 2222 111346666 7999
Q ss_pred EEEeeeeeccCCcceEEEeeeccCCCCC-------C-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 017780 220 GGILCTSTYRTKKFNVSIGIGLNVNNEE-------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (366)
Q Consensus 220 gGILiE~~~~~~~~~vvIGIGINvn~~~-------p-------~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~ 284 (366)
|-|=+-... ....=|+.|||+++. | .|++.+ -+..++.+++...+.++|.+.|.
T Consensus 152 aaIGv~v~r----~vT~HG~ALNv~~DL~~F~~I~PCGl~~~~vTSL~~-------lg~~~~~~~v~~~l~~~f~~~f~ 219 (235)
T PRK14343 152 AALGLKIRN----GCSYHGLSLNVKMDLRPFLAINPCGYAGLETVDMAS-------LGVAADWADVAQTLARRLIANLD 219 (235)
T ss_pred EEEeeeeec----ceeecccEEEeCCCchhhCcEECCCCCCCcEeeHHH-------hCCCCCHHHHHHHHHHHHHHHhC
Confidence 987664321 123478999999751 1 345532 24577888888888888877653
No 23
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]
Probab=81.80 E-value=40 Score=31.70 Aligned_cols=119 Identities=17% Similarity=0.176 Sum_probs=65.4
Q ss_pred cCCCCeeecCCCCceeeeeeeccCCCCcchhHHHHHH--HHHHHHHHhhhcCCCCCCCceeEecCcEEECC-EEEEEEee
Q 017780 148 GRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASL--ALTEAINYVCSRDGLPCLDIKIKWPNDLYLNG-IKVGGILC 224 (366)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~~gl--AV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~g-kKlgGILi 224 (366)
+|.|..=+--||.+-.=.++..... +...-.|+.++ ||.++|+++ |+. .-+.+==--||+++ +|||-|=+
T Consensus 76 ~RGGqvTyHGPGQ~V~Y~ildLkr~-~~~vr~~V~~LEqavI~tLa~~----~i~--~~~~~~~~GVwV~~~~KIAaiGi 148 (221)
T COG0321 76 DRGGQVTYHGPGQLVAYPILDLKRP-KLDVREYVRALEQAVINTLAEY----GIE--AERRPDRPGVWVEEERKIAAIGI 148 (221)
T ss_pred cCCceeEEeCCCcEEEEEEEecccc-cccHHHHHHHHHHHHHHHHHHc----CCc--ccccCCCCeEEecCCceEEEEEE
Confidence 4666644445566444444443321 11133444443 777787765 321 01111112367775 99997766
Q ss_pred eeeccCCcceEEEeeeccCCCCC--------------CcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 017780 225 TSTYRTKKFNVSIGIGLNVNNEE--------------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (366)
Q Consensus 225 E~~~~~~~~~vvIGIGINvn~~~--------------p~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~ 284 (366)
-... ....=|+.|||+++. +.+++.+. +..++.+++-..+.++|.+.+.
T Consensus 149 rirr----~vs~HGlALNv~~DL~~F~~I~PCG~~~~~~tsl~d~-------~~~v~~~~V~~~l~~~~~~~l~ 211 (221)
T COG0321 149 RIRR----GVTFHGLALNVNMDLSPFNRIVPCGYAGMEVTSLSDL-------GPPVTVDEVAKALVAAFAKLLG 211 (221)
T ss_pred EEec----ccceeeeEEeccCCchhccceeccccCCCceeEHHHh-------CCCCcHHHHHHHHHHHHHHHhC
Confidence 4321 123579999999752 12444332 3457888888888888877654
No 24
>PRK14349 lipoate-protein ligase B; Provisional
Probab=80.48 E-value=48 Score=31.24 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=69.8
Q ss_pred cCCCCeeecCCCCceeeeeeeccCCCCcchhHHHHH--HHHHHHHHHhhhcCCCCCCCcee-EecCcEEEC-----CEEE
Q 017780 148 GRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVAS--LALTEAINYVCSRDGLPCLDIKI-KWPNDLYLN-----GIKV 219 (366)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~~g--lAV~~aL~~~~~~~G~~~~~v~I-KWPNDI~v~-----gkKl 219 (366)
.|.|...+--||.|..=.++..... ....-.|+.. -++.++++++ |++. ..+. +-| -||++ .+||
T Consensus 65 ~RGG~iTyHGPGQLV~YpIldL~~~-~~~vr~yv~~LE~~~I~~l~~~----gi~~-a~~~~~~~-GVWv~~~~~~~~KI 137 (220)
T PRK14349 65 DRGGQVTYHGPGQVLAYTLFDLRRA-GLYVREYVDMLEQATLATLREL----GLEQ-ACRKPGAP-GIYVPQPGGELAKI 137 (220)
T ss_pred cCCcceEEeCCCcEEEEEEEEcccC-CCCHHHHHHHHHHHHHHHHHHh----CCcc-eeecCCCC-cEEeCCCCCCCceE
Confidence 5788888889998766556654321 1222333333 3566777765 3210 0111 122 35665 4899
Q ss_pred EEEeeeeeccCCcceEEEeeeccCCCCC--------------CcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 017780 220 GGILCTSTYRTKKFNVSIGIGLNVNNEE--------------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFY 283 (366)
Q Consensus 220 gGILiE~~~~~~~~~vvIGIGINvn~~~--------------p~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~ 283 (366)
|-|=+-... ....=|+.|||+++. ..|++.+ .+..++.+++...+.++|.+.|
T Consensus 138 aaiGv~v~r----~vT~HG~ALNv~~DL~~F~~IvPCGl~~~~vTSl~~-------~g~~~~~~~v~~~l~~~f~~~f 204 (220)
T PRK14349 138 AALGVKVRN----GYAYHGLALNIDMDLSPFLGINPCGYEGLRTVDLAA-------CGVRTSVERAGELLAAQLARAH 204 (220)
T ss_pred EEEeeEEec----ceeecceeEEecCCchhhCcEEcCCCCCCcEeeHHH-------hCCCCCHHHHHHHHHHHHHHHh
Confidence 987665321 123479999999751 1345532 2456888998888888887766
No 25
>PRK14341 lipoate-protein ligase B; Provisional
Probab=79.05 E-value=55 Score=30.65 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=64.5
Q ss_pred cCCCCeeecCCCCceeeeeeeccCCCCcchhHHH--HHHHHHHHHHHhhhcCCCCCCCceeEecC--cEEECC-------
Q 017780 148 GRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYV--ASLALTEAINYVCSRDGLPCLDIKIKWPN--DLYLNG------- 216 (366)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~--~glAV~~aL~~~~~~~G~~~~~v~IKWPN--DI~v~g------- 216 (366)
.|.|..=+--||.|..=.++..... ....-.|+ .--++.++++++ |+ +.. .-|+ -||+++
T Consensus 70 ~RGG~iTyHGPGQlV~YpIl~L~~~-~~~v~~yv~~lE~~iI~~l~~~----gi---~~~-~~~~~~GVWv~~~~~~~~~ 140 (213)
T PRK14341 70 GRGGQYTYHGPGQRVAYVMLDLKRR-RRDVRAFVAALEEWIIATLAAF----NI---RGE-RREDRVGVWVRRPDKGSGA 140 (213)
T ss_pred CCCcceeEECCCeEEEEEEEEcccc-CCCHHHHHHHHHHHHHHHHHHh----CC---ceE-EcCCCCeEEecCccCCCCC
Confidence 3556544455676554445543321 12222222 233555666654 43 221 2244 678863
Q ss_pred -EEEEEEeeeeeccCCcceEEEeeeccCCCCC--------------CcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH
Q 017780 217 -IKVGGILCTSTYRTKKFNVSIGIGLNVNNEE--------------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFET 281 (366)
Q Consensus 217 -kKlgGILiE~~~~~~~~~vvIGIGINvn~~~--------------p~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~ 281 (366)
+|||-|=+-... ....=|+.|||+++. ..||+.. .+..++.+++...++++|++
T Consensus 141 ~~KIaaIGv~v~r----~vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~-------~g~~~~~~~v~~~l~~~f~~ 209 (213)
T PRK14341 141 EDKIAAIGVRLRR----WVSFHGISINVEPDLSHFSGIVPCGISEHGVTSLVD-------LGLPVTMDDVDAALKKAFEK 209 (213)
T ss_pred CCcEEEEeeeEec----ceeccceEEEecCChhhhCcEecCCCCCCcEeeHHH-------hCCCCCHHHHHHHHHHHHHH
Confidence 799987665321 123479999998751 2355543 14567888888888888876
Q ss_pred HH
Q 017780 282 FY 283 (366)
Q Consensus 282 ~~ 283 (366)
.|
T Consensus 210 ~f 211 (213)
T PRK14341 210 VF 211 (213)
T ss_pred Hh
Confidence 54
No 26
>PF14563 DUF4444: Domain of unknown function (DUF4444); PDB: 3BFM_A.
Probab=71.44 E-value=7.7 Score=26.87 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=13.3
Q ss_pred EEEEEECCCceEEEEeCCCc
Q 017780 324 VTIQGLTSSGYLLAIGDDNQ 343 (366)
Q Consensus 324 G~i~GId~~G~Llv~~~dG~ 343 (366)
|++.|+|++..++++++++.
T Consensus 12 GtFlGvDE~FGmLLr~~~~T 31 (42)
T PF14563_consen 12 GTFLGVDEDFGMLLRDDDTT 31 (42)
T ss_dssp EEEEEE-TT--EEEE-SS-E
T ss_pred eeEEeeccccceEEEeCCcc
Confidence 89999999999999976643
No 27
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional
Probab=70.29 E-value=10 Score=40.47 Aligned_cols=63 Identities=21% Similarity=0.233 Sum_probs=42.0
Q ss_pred cCCCCeeecCCCCceeeeeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEE----CCEEEEEE
Q 017780 148 GRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYL----NGIKVGGI 222 (366)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v----~gkKlgGI 222 (366)
=-+|..=+-..|++.||++.+.+. ...- ...-.+.+||+++ | +++.+.=-|||.+ +|||++|-
T Consensus 296 ~SGGGAVYHD~GNlnfSfi~~~~~---~~~~--~~~~~Ii~aL~~L----G---I~ae~sgRNDI~v~~~~~GkKISGs 362 (562)
T PRK14061 296 SSGGGAVFHDLGNTCFTFMAGKPE---YDKT--ISTSIVLNALNAL----G---VSAEASGRNDLVVKTAEGDRKVSGS 362 (562)
T ss_pred CCCCcEEEEcCCceEEEEEeCCcc---cchH--HHHHHHHHHHHHc----C---CCeEECCCccEEEeeCCCCcEEEEE
Confidence 334556666778899999875321 1111 1124667888765 4 5677777899999 69999993
No 28
>PF01423 LSM: LSM domain ; InterPro: IPR001163 This family is found in Lsm (like-Sm) proteins and in bacterial Lsm-related Hfq proteins. In each case, the domain adopts a core structure consisting of an open beta-barrel with an SH3-like topology. Lsm (like-Sm) proteins have diverse functions, and are thought to be important modulators of RNA biogenesis and function [, ]. The Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6) []. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker []. In other snRNPs, certain Sm proteins are replaced with different Lsm proteins, such as with U7 snRNPs, in which the D1 and D2 Sm proteins are replaced with U7-specific Lsm10 and Lsm11 proteins, where Lsm11 plays a role in histone U7-specific RNA processing []. Lsm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Lsm proteins. The pleiotropic translational regulator Hfq (host factor Q) is a bacterial Lsm-like protein, which modulates the structure of numerous RNA molecules by binding preferentially to A/U-rich sequences in RNA []. Hfq forms an Lsm-like fold, however, unlike the heptameric Sm proteins, Hfq forms a homo-hexameric ring.; PDB: 1D3B_K 2Y9D_D 2Y9A_D 2Y9C_R 3VRI_C 2Y9B_K 3QUI_D 3M4G_H 3INZ_E 1U1S_C ....
Probab=64.16 E-value=20 Score=26.45 Aligned_cols=33 Identities=24% Similarity=0.138 Sum_probs=27.8
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|++...++.. + .|++.++|+...|++.+
T Consensus 6 ~~g~~V~V~l~~g~~-~--~G~L~~~D~~~Nl~L~~ 38 (67)
T PF01423_consen 6 LIGKRVRVELKNGRT-Y--RGTLVSFDQFMNLVLSD 38 (67)
T ss_dssp TTTSEEEEEETTSEE-E--EEEEEEEETTEEEEEEE
T ss_pred hCCcEEEEEEeCCEE-E--EEEEEEeechheEEeee
Confidence 369999999988754 3 49999999999999975
No 29
>cd01731 archaeal_Sm1 The archaeal sm1 proteins: The Sm proteins are conserved in all three domains of life and are always associated with U-rich RNA sequences. They function to mediate RNA-RNA interactions and RNA biogenesis. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. Eukaryotic Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6). Since archaebacteria do not have any splicing apparatus, Sm proteins of archaebacteria may play a more general role. Archaeal Lsm proteins are likely to represent the ancestral Sm domain.
Probab=62.33 E-value=25 Score=26.44 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=27.7
Q ss_pred CCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeC
Q 017780 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 340 (366)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~ 340 (366)
.|++|.|...++.. + .|+..++|+...|++.+.
T Consensus 9 ~~~~V~V~l~~g~~-~--~G~L~~~D~~mNlvL~~~ 41 (68)
T cd01731 9 LNKPVLVKLKGGKE-V--RGRLKSYDQHMNLVLEDA 41 (68)
T ss_pred cCCEEEEEECCCCE-E--EEEEEEECCcceEEEeeE
Confidence 68999999887664 3 499999999999999753
No 30
>smart00651 Sm snRNP Sm proteins. small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing
Probab=58.02 E-value=27 Score=25.77 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=27.5
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|++...++.. + .|++.++|+...+++.+
T Consensus 6 ~~~~~V~V~l~~g~~-~--~G~L~~~D~~~NlvL~~ 38 (67)
T smart00651 6 LIGKRVLVELKNGRE-Y--RGTLKGFDQFMNLVLED 38 (67)
T ss_pred hCCcEEEEEECCCcE-E--EEEEEEECccccEEEcc
Confidence 468999999987754 3 49999999999999875
No 31
>PRK14346 lipoate-protein ligase B; Provisional
Probab=57.26 E-value=1.8e+02 Score=27.66 Aligned_cols=59 Identities=14% Similarity=0.096 Sum_probs=38.2
Q ss_pred ECCEEEEEEeeeeeccCCcceEEEeeeccCCCCC--------------CcchHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Q 017780 214 LNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEE--------------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKF 279 (366)
Q Consensus 214 v~gkKlgGILiE~~~~~~~~~vvIGIGINvn~~~--------------p~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~ 279 (366)
.+.+|||-|=+-... ....=|+.|||+++. ..|++.+ .+..++.+++...+.++|
T Consensus 156 ~~~~KIaAiGv~v~r----~vT~HG~ALNv~~DL~~F~~IvPCGl~~~~vTSL~~-------lg~~~~~~~v~~~l~~~f 224 (230)
T PRK14346 156 RGLGKIAALGIKVSR----HCTYHGVALNVAMDLEPFSRINPCGYAGLQTVDLST-------IGVQTTWDEAASVLGQQL 224 (230)
T ss_pred cccceEEEEeeEEec----ceeecceeEEcCCChhhhCcEECCCCCCCceeeHHH-------hCCCCCHHHHHHHHHHHH
Confidence 345799977665321 123589999999751 1345532 245788888888888888
Q ss_pred HHHH
Q 017780 280 ETFY 283 (366)
Q Consensus 280 ~~~~ 283 (366)
.+.+
T Consensus 225 ~~~~ 228 (230)
T PRK14346 225 ARYL 228 (230)
T ss_pred HHHh
Confidence 7654
No 32
>cd01717 Sm_B The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit B heterodimerizes with subunit D3 and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=57.10 E-value=25 Score=27.33 Aligned_cols=33 Identities=15% Similarity=0.053 Sum_probs=27.9
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
++|++|.|...++... .|++.|+|....|++.+
T Consensus 8 ~l~~~V~V~l~dgR~~---~G~L~~~D~~~NlVL~~ 40 (79)
T cd01717 8 LINYRLRVTLQDGRQF---VGQFLAFDKHMNLVLSD 40 (79)
T ss_pred HcCCEEEEEECCCcEE---EEEEEEEcCccCEEcCC
Confidence 4799999998877653 49999999999999865
No 33
>cd00600 Sm_like The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=56.56 E-value=28 Score=25.17 Aligned_cols=32 Identities=16% Similarity=0.081 Sum_probs=26.7
Q ss_pred CCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
.|++|++...++.. + .|++.++|+...+.+.+
T Consensus 5 ~g~~V~V~l~~g~~-~--~G~L~~~D~~~Ni~L~~ 36 (63)
T cd00600 5 VGKTVRVELKDGRV-L--EGVLVAFDKYMNLVLDD 36 (63)
T ss_pred CCCEEEEEECCCcE-E--EEEEEEECCCCCEEECC
Confidence 69999999887654 3 49999999999999864
No 34
>cd06168 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm9 proteins have a single Sm-like domain structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=54.91 E-value=37 Score=26.35 Aligned_cols=33 Identities=6% Similarity=0.037 Sum_probs=28.0
Q ss_pred CCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeC
Q 017780 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 340 (366)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~ 340 (366)
+|++|++...++... .|++.++|..+.+++.+.
T Consensus 9 l~~~v~V~l~dgR~~---~G~l~~~D~~~NivL~~~ 41 (75)
T cd06168 9 LGRTMRIHMTDGRTL---VGVFLCTDRDCNIILGSA 41 (75)
T ss_pred cCCeEEEEEcCCeEE---EEEEEEEcCCCcEEecCc
Confidence 799999999887643 499999999999999754
No 35
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function.
Probab=54.37 E-value=85 Score=23.96 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=30.7
Q ss_pred HHHHhhcCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeCCCcEEEE
Q 017780 298 YYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCEL 347 (366)
Q Consensus 298 y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l 347 (366)
|...--+.|++|.++...+. +. |+..++.+| ++.++.. |+...+
T Consensus 13 yq~lq~liG~~vvV~T~~g~--v~--G~L~~V~pD-hIvl~~~-~~~~~I 56 (66)
T PF10842_consen 13 YQTLQSLIGQRVVVQTTRGS--VR--GILVDVKPD-HIVLEEN-GTPFFI 56 (66)
T ss_pred HHHHHHhcCCEEEEEEcCCc--EE--EEEEeecCC-EEEEEeC-CcEEEE
Confidence 44445578999999987654 33 899999999 6677654 544433
No 36
>cd01728 LSm1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm1 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=53.65 E-value=33 Score=26.57 Aligned_cols=34 Identities=9% Similarity=0.202 Sum_probs=27.9
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeC
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 340 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~ 340 (366)
.++++|.|...++... .|+..|+|+.+.|++.+.
T Consensus 10 ~l~k~v~V~l~~gr~~---~G~L~~fD~~~NlvL~d~ 43 (74)
T cd01728 10 DLDKKVVVLLRDGRKL---IGILRSFDQFANLVLQDT 43 (74)
T ss_pred hcCCEEEEEEcCCeEE---EEEEEEECCcccEEecce
Confidence 3799999998876543 499999999999999753
No 37
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=53.19 E-value=51 Score=30.12 Aligned_cols=74 Identities=24% Similarity=0.380 Sum_probs=39.4
Q ss_pred ceeeeeee-ccC--CCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCCcceEEE
Q 017780 161 LMFSFTIQ-MED--GRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSI 237 (366)
Q Consensus 161 L~fSl~l~-~~~--~~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~~~vvI 237 (366)
-+..|++. ++. .......|-+...-+.+.|.++ | .. ..+==.|||++|+|+.=-...... ...-|
T Consensus 63 dmlhFIvEhFD~~dl~~~~~rQRLlv~i~kE~L~~~----g---v~-~~R~GDDLy~~~~KLSVSIAt~s~----vS~kI 130 (183)
T PF04017_consen 63 DMLHFIVEHFDSPDLKLAYLRQRLLVAIIKEVLEEY----G---VK-LRREGDDLYVNGRKLSVSIATASP----VSTKI 130 (183)
T ss_dssp EEEEEEEEE-S---HHHHHHHHHHHHHHHHHHHHTT----T------EEEETTEEEETTEE-EEEEEEEET----TEEEE
T ss_pred cceEEEEeeCCCCcHHHHHHHHHHHHHHHHHHHHhc----C---Cc-eeecccceeECCCEEEEEEEecCc----chheE
Confidence 35566664 221 1122334445555566666654 3 22 244568999999998643333322 23457
Q ss_pred eeeccCCCC
Q 017780 238 GIGLNVNNE 246 (366)
Q Consensus 238 GIGINvn~~ 246 (366)
=+||||...
T Consensus 131 H~GiNV~~~ 139 (183)
T PF04017_consen 131 HFGINVSSE 139 (183)
T ss_dssp EEEEESS-T
T ss_pred EEeEeeccc
Confidence 789999875
No 38
>cd01726 LSm6 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm6 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=50.06 E-value=49 Score=24.78 Aligned_cols=32 Identities=13% Similarity=0.011 Sum_probs=26.8
Q ss_pred CCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
.|++|+|+..++.. + .|+..|+|+.=.|.+.+
T Consensus 9 ~~~~V~V~Lk~g~~-~--~G~L~~~D~~mNlvL~~ 40 (67)
T cd01726 9 IGRPVVVKLNSGVD-Y--RGILACLDGYMNIALEQ 40 (67)
T ss_pred CCCeEEEEECCCCE-E--EEEEEEEccceeeEEee
Confidence 79999999987764 3 49999999988888865
No 39
>PRK00737 small nuclear ribonucleoprotein; Provisional
Probab=49.39 E-value=53 Score=25.05 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=27.3
Q ss_pred CCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeC
Q 017780 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 340 (366)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~ 340 (366)
.|++|.|...++.. + .|+..|+|+.-.+++.+.
T Consensus 13 ~~k~V~V~lk~g~~-~--~G~L~~~D~~mNlvL~d~ 45 (72)
T PRK00737 13 LNSPVLVRLKGGRE-F--RGELQGYDIHMNLVLDNA 45 (72)
T ss_pred CCCEEEEEECCCCE-E--EEEEEEEcccceeEEeeE
Confidence 69999999887654 3 499999999999998763
No 40
>cd01727 LSm8 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm8 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=46.51 E-value=44 Score=25.61 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=27.3
Q ss_pred CCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeC
Q 017780 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 340 (366)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~ 340 (366)
++++|.+...++... .|+.+|.|....+++.+.
T Consensus 8 l~~~V~V~l~dgr~~---~G~L~~~D~~~NlvL~~~ 40 (74)
T cd01727 8 LNKTVSVITVDGRVI---VGTLKGFDQATNLILDDS 40 (74)
T ss_pred cCCEEEEEECCCcEE---EEEEEEEccccCEEccce
Confidence 799999988776643 499999999999998753
No 41
>cd01719 Sm_G The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit G binds subunits E and F to form a trimer which then assembles onto snRNA along with the D1/D2 and D3/B heterodimers forming a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=46.40 E-value=50 Score=25.32 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=27.1
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
+.|++|.|...++.. + .|+..|+|+.-.|++.+
T Consensus 8 ~i~k~V~V~L~~g~~-~--~G~L~~~D~~mNlvL~~ 40 (72)
T cd01719 8 YMDKKLSLKLNGNRK-V--SGILRGFDPFMNLVLDD 40 (72)
T ss_pred hCCCeEEEEECCCeE-E--EEEEEEEcccccEEecc
Confidence 379999998887654 3 49999999999999864
No 42
>cd01722 Sm_F The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit F is capable of forming both homo- and hetero-heptamer ring structures. To form the hetero-heptamer, Sm subunit F initially binds subunits E and G to form a trimer which then assembles onto snRNA along with the D3/B and D1/D2 heterodimers.
Probab=45.22 E-value=70 Score=24.05 Aligned_cols=33 Identities=24% Similarity=0.102 Sum_probs=27.2
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|.|...++.. + .|+..++|+.=.+.+.+
T Consensus 9 ~~g~~V~V~Lk~g~~-~--~G~L~~~D~~mNi~L~~ 41 (68)
T cd01722 9 LTGKPVIVKLKWGME-Y--KGTLVSVDSYMNLQLAN 41 (68)
T ss_pred cCCCEEEEEECCCcE-E--EEEEEEECCCEEEEEee
Confidence 379999999988764 3 49999999988888865
No 43
>cd01732 LSm5 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=44.94 E-value=1.4e+02 Score=23.21 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=26.7
Q ss_pred CCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeC
Q 017780 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 340 (366)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~ 340 (366)
.|++|.+...++.. + .|+++|+|+.=.|++.+.
T Consensus 12 ~~~~V~V~l~~gr~-~--~G~L~g~D~~mNlvL~da 44 (76)
T cd01732 12 IGSRIWIVMKSDKE-F--VGTLLGFDDYVNMVLEDV 44 (76)
T ss_pred CCCEEEEEECCCeE-E--EEEEEEeccceEEEEccE
Confidence 58999998877654 3 499999999988888753
No 44
>PF02107 FlgH: Flagellar L-ring protein; InterPro: IPR000527 The flgH, flgI and fliF genes of Salmonella typhimurium encode the major proteins for the L, P and M rings of the flagellar basal body []. In fact, the basal body consists of four rings (L,P,S and M) surrounding the flagellar rod, which is believed to transmit motor rotation to the filament []. The M ring is integral to the inner membrane of the cell, and may be connected to the rod via the S (supramembrane) ring, which lies just distal to it. The L and P rings reside in the outer membrane and periplasmic space, respectively. FlgH and FlgI, which are exported across the cell membrane to their destinations in the outer membrane and periplasmic space, have typical N-terminal cleaved signal-peptide sequences. FlgH is predicted to have an extensive beta-sheet structure, in keeping with other outer membrane proteins [].; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0009427 bacterial-type flagellum basal body, distal rod, L ring
Probab=44.65 E-value=47 Score=30.10 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=29.4
Q ss_pred eEEEEEECCCceEEEEeCCCcEEEEcCCCeeEEeecCeeccc
Q 017780 323 VVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRK 364 (366)
Q Consensus 323 ~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S~d~~~gli~~k 364 (366)
.++++++.++|.|+|+. +....--++.-+=.++|.||+.
T Consensus 97 ta~Vv~VlpNGnL~I~G---~k~i~vn~e~~~i~lsGiVRp~ 135 (179)
T PF02107_consen 97 TARVVEVLPNGNLVIEG---EKQIRVNGEEQYIRLSGIVRPE 135 (179)
T ss_pred EEEEEEECCCCcEEEEE---EEEEEECCCEEEEEEEEEECHH
Confidence 37999999999999984 3333334666677889999874
No 45
>PRK14347 lipoate-protein ligase B; Provisional
Probab=43.21 E-value=2.8e+02 Score=25.89 Aligned_cols=118 Identities=15% Similarity=0.195 Sum_probs=62.7
Q ss_pred cCCCCeeecCCCCceeeeeeeccCCC-CcchhHHHHH--HHHHHHHHHhhhcCCCCCCCc-eeEecCcEEEC-----CEE
Q 017780 148 GRSKNAWESPKGCLMFSFTIQMEDGR-VVPLLQYVAS--LALTEAINYVCSRDGLPCLDI-KIKWPNDLYLN-----GIK 218 (366)
Q Consensus 148 GR~GR~W~Sp~G~L~fSl~l~~~~~~-~~~~ls~~~g--lAV~~aL~~~~~~~G~~~~~v-~IKWPNDI~v~-----gkK 218 (366)
.|.|..=+--||.|..=.++...... ....-.|+.. -++.++++++ |+ +. +.+=-=-||++ ++|
T Consensus 68 ~RGG~vTyHGPGQlV~YpIldL~~~~~~~~v~~yv~~lE~~ii~~l~~~----gi---~~~~~~~~~GVWv~~~~~~~~K 140 (209)
T PRK14347 68 GRGGKFTFHGPGQRVIYPILNLASPNRHKDLKLYIKMLEEWIINSLNYF----GI---KAYIIKDKVGIWVKVRKDEFAK 140 (209)
T ss_pred cCCcceEEeCCCcEEEEEEEeccccccCCCHHHHHHHHHHHHHHHHHHc----CC---ceEEcCCCCEEEEcCCCCCCce
Confidence 35666555567775554555443211 1122223333 3556666654 32 22 11101123443 589
Q ss_pred EEEEeeeeeccCCcceEEEeeeccCCCCC--------------CcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 017780 219 VGGILCTSTYRTKKFNVSIGIGLNVNNEE--------------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFY 283 (366)
Q Consensus 219 lgGILiE~~~~~~~~~vvIGIGINvn~~~--------------p~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~ 283 (366)
||-|=+-... ....=|+.|||+++. ..||+.+ .+..++.+++...+.++|.+.|
T Consensus 141 IaaiGv~v~r----~vT~HG~AlNv~~dL~~F~~IvPCGl~~~~vTSl~~-------~g~~~~~~~v~~~l~~~f~~~f 208 (209)
T PRK14347 141 IAAIGVRVRK----WVTYHGVAINISTDLSKFSGIIPCGLENSLVTSLNQ-------LGIHVEMSEFDKIIQTEFNKIF 208 (209)
T ss_pred EEEEeEEEec----ceeecceEEEeCCCccccCcEECCCCCCCcEeeHHH-------hCCCCCHHHHHHHHHHHHHHHh
Confidence 9987665321 123479999998751 1355532 2456788888888888886543
No 46
>cd01729 LSm7 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm7 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=42.81 E-value=55 Score=25.66 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=27.4
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
++|++|.|...++.. + .|+..|+|+...|++.+
T Consensus 10 ~i~k~V~V~l~~gr~-~--~G~L~~~D~~mNlvL~~ 42 (81)
T cd01729 10 YVDKKIRVKFQGGRE-V--TGILKGYDQLLNLVLDD 42 (81)
T ss_pred hcCCeEEEEECCCcE-E--EEEEEEEcCcccEEecC
Confidence 479999998877654 3 49999999999999964
No 47
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=42.66 E-value=1.4e+02 Score=22.08 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=28.7
Q ss_pred hcCCCEEEEEECCccEEEeeeEEEEEECCCce-EEEEeCCCcEEEEcC
Q 017780 303 LHSGQRVIVQEKNEDQVVENVVTIQGLTSSGY-LLAIGDDNQMCELHP 349 (366)
Q Consensus 303 ~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~-Llv~~~dG~~~~l~~ 349 (366)
+..|+.|.+.-++....++ |+|.+.|.... -.|.-+||...++.-
T Consensus 6 ~~~Ge~V~~rWP~s~lYYe--~kV~~~d~~~~~y~V~Y~DGtel~lke 51 (55)
T PF09465_consen 6 FAIGEVVMVRWPGSSLYYE--GKVLSYDSKSDRYTVLYEDGTELELKE 51 (55)
T ss_dssp S-SS-EEEEE-TTTS-EEE--EEEEEEETTTTEEEEEETTS-EEEEEC
T ss_pred ccCCCEEEEECCCCCcEEE--EEEEEecccCceEEEEEcCCCEEEecc
Confidence 3579999999998876555 89999998544 346667777655543
No 48
>PF01287 eIF-5a: Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; InterPro: IPR020189 A five-stranded beta-barrel was first noted as a common structure among four proteins binding single-stranded nucleic acids (staphylococcal nuclease and aspartyl-tRNA synthetase) or oligosaccharides (B subunits of enterotoxin and verotoxin-1), and has been termed the oligonucleotide/oligosaccharide binding motif, or OB fold, a five-stranded beta-sheet coiled to form a closed beta-barrel capped by an alpha helix located between the third and fourth strands []. Two ribosomal proteins, S17 and S1, are members of this class, and have different variations of the OB fold theme. Comparisons with other OB fold nucleic acid binding proteins suggest somewhat different mechanisms of nucleic acid recognition in each case []. There are many nucleic acid-binding proteins that contain domains with this OB-fold structure, including anticodon-binding tRNA synthetases, ssDNA-binding proteins (CDC13, telomere-end binding proteins), phage ssDNA-binding proteins (gp32, gp2.5, gpV), cold shock proteins, DNA ligases, RNA-capping enzymes, DNA replication initiators and RNA polymerase subunit RBP8 []. This entry represents the RNA-binding domain of translation elongation factor IF5A [].; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0043022 ribosome binding, 0006452 translational frameshifting, 0045901 positive regulation of translational elongation, 0045905 positive regulation of translational termination; PDB: 1IZ6_B 3CPF_A 1KHI_A 1BKB_A 1XTD_A 3ER0_A 3HKS_B 1X6O_A 2EIF_A 1EIF_A.
Probab=42.33 E-value=43 Score=25.69 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.3
Q ss_pred EEEEEECCCceEEEEeCCCcEEE
Q 017780 324 VTIQGLTSSGYLLAIGDDNQMCE 346 (366)
Q Consensus 324 G~i~GId~~G~Llv~~~dG~~~~ 346 (366)
+.+.+|+++|+|.+.+++|...+
T Consensus 7 yqli~I~~Dg~lsLMde~get~e 29 (69)
T PF01287_consen 7 YQLIDIDGDGFLSLMDEDGETRE 29 (69)
T ss_dssp EEEEEEETTTEEEEEETTS-EEE
T ss_pred EEEEEEccCcEEEEEcCCCCeec
Confidence 68999999999999999998877
No 49
>COG2029 Uncharacterized conserved protein [Function unknown]
Probab=39.26 E-value=1.2e+02 Score=27.56 Aligned_cols=67 Identities=22% Similarity=0.328 Sum_probs=35.3
Q ss_pred CcEEECCEEEEEEeeeeeccCCcceEEEeeeccCCCC-CCcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHH
Q 017780 210 NDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNE-EPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDT 285 (366)
Q Consensus 210 NDI~v~gkKlgGILiE~~~~~~~~~vvIGIGINvn~~-~p~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~ 285 (366)
.|+|++|+|+.=-..... ....-|=+||||... .|. .++. . +.+.+ ..|..++...+..++-+-++.
T Consensus 110 DDly~~grKLtVsIat~s----~vs~kiHlGiNV~t~g~p~--V~~i-g-L~dlg-~~Di~~~m~~va~~yv~Eie~ 177 (189)
T COG2029 110 DDLYVEGRKLTVSIATVS----PVSSKIHLGINVKTEGVPD--VDAI-G-LEDLG-YGDILEFMERVAVAYVREIEK 177 (189)
T ss_pred CceeecCcEEEEEEEecC----CcceeEEEeEeeecccCCC--CCcc-c-ccccC-CCCHHHHHHHHHHHHHHHHHH
Confidence 799999999853333222 122347789999864 231 1111 1 11112 256666666655555444443
No 50
>cd01721 Sm_D3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D3 heterodimerizes with subunit B and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=37.90 E-value=1.8e+02 Score=22.01 Aligned_cols=33 Identities=12% Similarity=-0.031 Sum_probs=27.3
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|.|+..++.. + .|++.++|..-.+.+++
T Consensus 8 ~~g~~V~VeLk~g~~-~--~G~L~~~D~~MNl~L~~ 40 (70)
T cd01721 8 AEGHIVTVELKTGEV-Y--RGKLIEAEDNMNCQLKD 40 (70)
T ss_pred CCCCEEEEEECCCcE-E--EEEEEEEcCCceeEEEE
Confidence 479999999988754 3 49999999998888875
No 51
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=36.46 E-value=68 Score=30.25 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=29.8
Q ss_pred eEEEEEECCCceEEEEeCCCcEEEEcCCCeeEEeecCeeccc
Q 017780 323 VVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRK 364 (366)
Q Consensus 323 ~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S~d~~~gli~~k 364 (366)
.+++.++.++|.|+|+. +....--+|.-+=.++|.||+.
T Consensus 140 ta~V~~VlpNGnL~I~G---eK~i~vN~~~e~I~lsGvVRP~ 178 (224)
T PRK12698 140 SANVMQVLPNGNLVIRG---EKWISINNGDEFIRLTGIVRSQ 178 (224)
T ss_pred EEEEEEECCCCCEEEEE---EEEEEECCCEEEEEEEEEECHH
Confidence 37899999999999984 3333334667788889999875
No 52
>PRK00249 flgH flagellar basal body L-ring protein; Reviewed
Probab=36.15 E-value=69 Score=30.14 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=29.7
Q ss_pred eEEEEEECCCceEEEEeCCCcEEEEcCCCeeEEeecCeeccc
Q 017780 323 VVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRK 364 (366)
Q Consensus 323 ~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S~d~~~gli~~k 364 (366)
.++++++.++|.|+|+. +....--+|.-+=.++|.||+.
T Consensus 139 ta~V~~VlpNGnLvI~G---~K~i~vN~e~~~i~lsGiVRP~ 177 (222)
T PRK00249 139 TVTVTQVLPNGNLVIRG---EKEVRVNQGTEFLRVSGVVRPR 177 (222)
T ss_pred EEEEEEECCCCcEEEEE---EEEEEECCCEEEEEEEEEECHH
Confidence 47899999999999984 3333334667777889999874
No 53
>cd01724 Sm_D1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D1 heterodimerizes with subunit D2 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing DB, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=34.88 E-value=2.2e+02 Score=22.79 Aligned_cols=33 Identities=24% Similarity=0.156 Sum_probs=27.3
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|+|+..++.. + .|++.++|+.=.+.+++
T Consensus 9 l~g~~V~VeLKng~~-~--~G~L~~vD~~MNl~L~~ 41 (90)
T cd01724 9 LTNETVTIELKNGTI-V--HGTITGVDPSMNTHLKN 41 (90)
T ss_pred CCCCEEEEEECCCCE-E--EEEEEEEcCceeEEEEE
Confidence 379999999988764 3 39999999998888875
No 54
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=34.43 E-value=2.2e+02 Score=22.01 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=30.9
Q ss_pred hcCCCEEEEEECCccEEEeeeEEEEEECCCc-eEEEEeCCCcEEEEcCCC
Q 017780 303 LHSGQRVIVQEKNEDQVVENVVTIQGLTSSG-YLLAIGDDNQMCELHPDG 351 (366)
Q Consensus 303 ~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G-~Llv~~~dG~~~~l~~dg 351 (366)
+..++.|++..-.+....+..|+|..||+.. .|.+.++++....+.-+.
T Consensus 39 ~~~~~~v~ity~~~g~~~~~~G~I~~id~~~~~l~~~~~~~~~~~I~~~~ 88 (92)
T PF08863_consen 39 YQENQPVTITYYEDGYYQSVTGTIHKIDEINRTLKLKDEDGETEKIPFDD 88 (92)
T ss_pred hcCCCEEEEEEEECCeeEEEEEEEEEEcCCCCEEEEEeCCCCEEEEEhhh
Confidence 3457777776543333334459999999874 555666567766665443
No 55
>cd01733 LSm10 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm10 is an SmD1-like protein which is thought to bind U7 snRNA along with LSm11 and five other Sm subunits to form a 7-member ring structure. LSm10 and the U7 snRNP of which it is a part are thought to play an important role in histone mRNA 3' processing.
Probab=34.17 E-value=2.2e+02 Score=22.09 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=32.2
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeCCCcEEEEcCCCeeE
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSL 354 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S~ 354 (366)
..|+.|.|+..++.. + .|++.++|+.=.+.+.+. ....+++...
T Consensus 17 l~g~~V~VeLKng~~-~--~G~L~~vD~~MNl~L~~~----~~~~~~~~~~ 60 (78)
T cd01733 17 LQGKVVTVELRNETT-V--TGRIASVDAFMNIRLAKV----TIIDRNGKQV 60 (78)
T ss_pred CCCCEEEEEECCCCE-E--EEEEEEEcCCceeEEEEE----EEEcCCCcee
Confidence 479999999987764 3 399999999988888753 2444555443
No 56
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=34.15 E-value=1.5e+02 Score=20.65 Aligned_cols=44 Identities=11% Similarity=0.080 Sum_probs=29.5
Q ss_pred hcCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeCC-CcEEEEcC
Q 017780 303 LHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDD-NQMCELHP 349 (366)
Q Consensus 303 ~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~d-G~~~~l~~ 349 (366)
+..|+.|.+.. .+.... .|+|.++++++...|.-.| |....+..
T Consensus 3 ~~~G~~~~a~~-~d~~wy--ra~I~~~~~~~~~~V~f~D~G~~~~v~~ 47 (57)
T smart00333 3 FKVGDKVAARW-EDGEWY--RARIIKVDGEQLYEVFFIDYGNEEVVPP 47 (57)
T ss_pred CCCCCEEEEEe-CCCCEE--EEEEEEECCCCEEEEEEECCCccEEEeH
Confidence 34688888876 333343 4899999987777776555 76655543
No 57
>PRK09618 flgD flagellar basal body rod modification protein; Provisional
Probab=30.26 E-value=1.5e+02 Score=26.12 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHH--HHHHHHHHHHhcChHHHH---HHHHHHhhcCCCEEEEEECCccEEEeeeEEEEEEC-CCceEEE
Q 017780 264 YQFRREDVIAAFFN--KFETFYDTFINQGFQTLE---ELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLT-SSGYLLA 337 (366)
Q Consensus 264 ~~~~r~~Ll~~ll~--~~~~~~~~~~~~gf~~l~---~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId-~~G~Llv 337 (366)
.+.|-.++++++.. .+|..... +..+..+. .......-+.|+.|.+...++.. + .|++.+|. .+|.-.+
T Consensus 47 ~P~D~tefiaQlAQfs~lEq~~~~--n~~l~~l~~~~~~~~~a~slVGk~V~~~~~~g~~-~--tG~V~~V~~~~g~~~~ 121 (142)
T PRK09618 47 NPMEDKEFIAQMAQFSSLEQMTNM--NKSMEKLVSSSDGLTKYSELIGKEVEWEGEDGEI-V--SGTVTSVKQKDGDYPL 121 (142)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHhCCEEEEEeCCCCE-E--EEEEEEEEEcCCcEEE
Confidence 45677777776543 22221111 12222221 11123445789999997655543 3 38888886 4554332
Q ss_pred EeCCCcEEEE
Q 017780 338 IGDDNQMCEL 347 (366)
Q Consensus 338 ~~~dG~~~~l 347 (366)
...||+.+.+
T Consensus 122 ~~v~G~~~~l 131 (142)
T PRK09618 122 VLDNGTWIVA 131 (142)
T ss_pred EEECCEEEec
Confidence 2345655544
No 58
>cd01723 LSm4 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=28.94 E-value=2.7e+02 Score=21.35 Aligned_cols=32 Identities=9% Similarity=-0.008 Sum_probs=26.3
Q ss_pred CCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
.|++|.|+..++.. + .|++.++|+.=.+.+.+
T Consensus 10 ~g~~V~VeLkng~~-~--~G~L~~~D~~mNi~L~~ 41 (76)
T cd01723 10 QNHPMLVELKNGET-Y--NGHLVNCDNWMNIHLRE 41 (76)
T ss_pred CCCEEEEEECCCCE-E--EEEEEEEcCCCceEEEe
Confidence 79999999987764 3 49999999988888764
No 59
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=28.07 E-value=1.2e+02 Score=28.59 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=29.3
Q ss_pred eEEEEEECCCceEEEEeCCCcEEEEcCCCeeEEeecCeeccc
Q 017780 323 VVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRK 364 (366)
Q Consensus 323 ~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S~d~~~gli~~k 364 (366)
.+++..+-++|.|+|+. +....--+|.-+=.++|.||+.
T Consensus 137 ta~V~~VlpNGnL~I~G---eK~i~vN~e~e~i~~sGvVRP~ 175 (221)
T PRK12407 137 TVAVHQVLPNGVLVIRG---EKWLTLNQGDEYMRVTGLVRAD 175 (221)
T ss_pred EEEEEEECCCCCEEEEE---EEEEEECCCEEEEEEEEEECHH
Confidence 37899999999999984 3333334667788889999874
No 60
>PRK12699 flgH flagellar basal body L-ring protein; Reviewed
Probab=27.66 E-value=1.2e+02 Score=29.11 Aligned_cols=39 Identities=23% Similarity=0.406 Sum_probs=29.1
Q ss_pred eEEEEEECCCceEEEEeCCCcEEEEcCCCeeEEeecCeeccc
Q 017780 323 VVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRK 364 (366)
Q Consensus 323 ~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S~d~~~gli~~k 364 (366)
.+++..+.++|.|+|+.+ +.+.+ -.|.-+=.++|.||+.
T Consensus 164 tvtVv~VLPNGNLvI~Ge--K~i~v-N~~~e~IrlsGvVRP~ 202 (246)
T PRK12699 164 TVTVVDILPNGNLLVSGE--KQIGI-NQGHEFIRLSGVINPI 202 (246)
T ss_pred EEEEEEECCCCCEEEEEE--EEEEE-CCCeEEEEEEEEEChh
Confidence 378999999999999843 23333 4566677889998874
No 61
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=27.35 E-value=1.2e+02 Score=28.78 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=29.6
Q ss_pred eEEEEEECCCceEEEEeCCCcEEEEcCCCeeEEeecCeeccc
Q 017780 323 VVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRK 364 (366)
Q Consensus 323 ~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S~d~~~gli~~k 364 (366)
.+++..+.++|.|+|+. +....--+|.-+-.++|.||+.
T Consensus 153 ta~V~~VLPNGNLvI~G---~k~v~vN~e~~~i~lsGvVRP~ 191 (236)
T PRK12696 153 AARVVRVLPGGLMQVEG---ARETRVNDETQYIVVSGLVRPR 191 (236)
T ss_pred EEEEEEECCCCCEEEEE---EEEEEECCCEEEEEEEEEECHH
Confidence 47899999999999984 3333334667788889999874
No 62
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=27.17 E-value=1.3e+02 Score=28.62 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=29.3
Q ss_pred eEEEEEECCCceEEEEeCCCcEEEEcCCCeeEEeecCeeccc
Q 017780 323 VVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRK 364 (366)
Q Consensus 323 ~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S~d~~~gli~~k 364 (366)
.+++..+-++|.|+|+. +....--+|.-+=-++|.||+.
T Consensus 147 ta~V~~VlpNGNLvI~G---eK~i~vN~~~e~irlsGiVRP~ 185 (230)
T PRK12700 147 TTTVIGVLPNGNLQIAG---EKQIAINRGSEYVRFSGVVDPR 185 (230)
T ss_pred EEEEEEECCCCCEEEEE---EEEEEECCCEEEEEEEEEECHH
Confidence 37899999999999984 3333334666677889999874
No 63
>PF11095 Gemin7: Gem-associated protein 7 (Gemin7); InterPro: IPR020338 Gem-associated protein 7 (Gemin7) is a component of the survival of motor neuron complex, which functions in the assembly of spliceosomal small nuclear ribonucleoproteins. Gemin7 interacts with several Sm proteins of spliceosomal small nuclear ribonucleoproteins, especially SmE []. Gem-associated protein 7 is found in the nucleoplasm, in nuclear "gems" (Gemini of Cajal bodies), and in the cytoplasm. Three transcript variants encoding the same protein have been found for this gene [].; GO: 0032797 SMN complex; PDB: 1Y96_D.
Probab=26.97 E-value=3.2e+02 Score=21.65 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=36.6
Q ss_pred HHHHHHHHHh-hcCCCEEEEEECCccEEEeeeEEEEEECCCceEEEE----eCCCcE---EEEcCCCeeEEe
Q 017780 293 TLEELYYKTW-LHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAI----GDDNQM---CELHPDGNSLDF 356 (366)
Q Consensus 293 ~l~~~y~~~~-~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~----~~dG~~---~~l~~dg~S~d~ 356 (366)
.++++|.+.+ ...|++|.+...++.. + .|++.+.|.++.-... ++=|.+ ....+|=.|++|
T Consensus 10 ~LRerfLr~l~~~~gk~v~f~l~e~t~-V--~a~F~a~d~~~~~f~Vs~L~TPlGv~~eAlLR~~DVi~~~f 78 (80)
T PF11095_consen 10 FLRERFLRSLLAMVGKPVEFTLHENTT-V--SARFGACDIDVSNFQVSNLQTPLGVQPEALLRCSDVISISF 78 (80)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEGGG-E-E--EEEEEEE-TTS-EEEEEEEETTTTEEEEEEEEGGGEEEEEE
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCCeE-E--EEEEEEecCchheEEhhhcCCCcccChhheeecCCEEEEEe
Confidence 3566676655 3579999998876543 4 3899999999876653 333433 233445555554
No 64
>COG1958 LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
Probab=26.01 E-value=2.4e+02 Score=21.67 Aligned_cols=33 Identities=24% Similarity=0.192 Sum_probs=26.5
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|.|...++.. + .|+..++|+.=.|.+.+
T Consensus 15 ~~~~~V~V~lk~g~~-~--~G~L~~~D~~mNlvL~d 47 (79)
T COG1958 15 LLNKRVLVKLKNGRE-Y--RGTLVGFDQYMNLVLDD 47 (79)
T ss_pred hhCCEEEEEECCCCE-E--EEEEEEEccceeEEEec
Confidence 357999999988764 3 49999999988888864
No 65
>cd01725 LSm2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm2 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=26.00 E-value=1.9e+02 Score=22.53 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=27.3
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|+|+..++.. + .|+..++|+.=.+.+.+
T Consensus 9 l~g~~V~VeLKng~~-~--~G~L~~vD~~MNi~L~n 41 (81)
T cd01725 9 LVGKEVTVELKNDLS-I--RGTLHSVDQYLNIKLTN 41 (81)
T ss_pred CCCCEEEEEECCCcE-E--EEEEEEECCCcccEEEE
Confidence 379999999987764 3 39999999998888875
No 66
>PRK12697 flgH flagellar basal body L-ring protein; Reviewed
Probab=25.86 E-value=1.3e+02 Score=28.40 Aligned_cols=39 Identities=23% Similarity=0.468 Sum_probs=29.0
Q ss_pred eEEEEEECCCceEEEEeCCCcEEEEcCCCeeEEeecCeeccc
Q 017780 323 VVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRK 364 (366)
Q Consensus 323 ~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S~d~~~gli~~k 364 (366)
.++++.+-++|.|+|+.+ +.+.+ -+|.-+=-++|.||+.
T Consensus 143 tv~V~~VlpNGnL~I~Ge--K~i~v-N~e~e~IrlsGvVRP~ 181 (226)
T PRK12697 143 TVTVTNVLPNGNLVVSGE--KQMLI-NQGNEFVRFSGVVNPN 181 (226)
T ss_pred EEEEEEECCCCCEEEEEE--EEEEE-CCCEEEEEEEEEECHH
Confidence 378999999999999843 23333 3666677889999874
No 67
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=25.86 E-value=2e+02 Score=23.27 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=21.1
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeCCCcEEEE
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCEL 347 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l 347 (366)
+.||.|++. |++..++.+ .+.+++.||..+.+
T Consensus 13 f~gk~V~iv-----------GkV~~~~~~-~~~~~~~Dg~~v~v 44 (101)
T cd04479 13 FVGKTVRIV-----------GKVEKVDGD-SLTLISSDGVNVTV 44 (101)
T ss_pred hCCCEEEEE-----------EEEEEecCC-eEEEEcCCCCEEEE
Confidence 568888875 667777765 56666677643333
No 68
>PRK12701 flgH flagellar basal body L-ring protein; Reviewed
Probab=25.70 E-value=1.4e+02 Score=28.35 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=29.3
Q ss_pred eEEEEEECCCceEEEEeCCCcEEEEcCCCeeEEeecCeeccc
Q 017780 323 VVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRK 364 (366)
Q Consensus 323 ~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S~d~~~gli~~k 364 (366)
.+++..+-++|.|+|+. +....--+|.-+=-++|.||+.
T Consensus 146 tv~V~~VlpNGnL~I~G---eK~v~vN~e~e~i~lsGvVRP~ 184 (230)
T PRK12701 146 SVTVAKVLANGNMVVQG---EKWVRINQGNEFVRLSGIVRPQ 184 (230)
T ss_pred EEEEEEECCCCCEEEEE---EEEEEECCCeEEEEEEEEECHH
Confidence 37899999999999984 3333334666677889999874
No 69
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=25.50 E-value=2.7e+02 Score=22.26 Aligned_cols=37 Identities=5% Similarity=0.205 Sum_probs=28.9
Q ss_pred HHhhcCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 300 KTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 300 ~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
+.++..|++|.|...++... .|++.++|..=.|++++
T Consensus 8 ~~~~~~~~~V~V~lr~~r~~---~G~L~~fD~hmNlvL~d 44 (87)
T cd01720 8 TQAVKNNTQVLINCRNNKKL---LGRVKAFDRHCNMVLEN 44 (87)
T ss_pred HHHHcCCCEEEEEEcCCCEE---EEEEEEecCccEEEEcc
Confidence 34444689999998877654 49999999988888865
No 70
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=23.98 E-value=2.4e+02 Score=19.11 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=28.3
Q ss_pred CEEEEEECCccEEEeeeEEEEEECCCceEEEEeCCCcEEEEcCC
Q 017780 307 QRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPD 350 (366)
Q Consensus 307 q~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~~d 350 (366)
+.|.+.++.+..+ .|.|...+ .+.+.|+..+|+...+..|
T Consensus 2 ~~vWvpD~~egfv---~g~I~~~~-g~~vtV~~~~G~~~tv~~d 41 (42)
T PF02736_consen 2 KWVWVPDPKEGFV---KGEIIEEE-GDKVTVKTEDGKEVTVKKD 41 (42)
T ss_dssp TEEEEEESSSSEE---EEEEEEEE-SSEEEEEETTTEEEEEEGG
T ss_pred CEEEEeCCcccEE---EEEEEEEc-CCEEEEEECCCCEEEeCCC
Confidence 4677777766543 37888665 4567888888988887665
No 71
>PRK12788 flgH flagellar basal body L-ring protein; Reviewed
Probab=23.46 E-value=1.5e+02 Score=28.14 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=29.9
Q ss_pred eEEEEEECCCceEEEEeCCCcEEEEcCCCeeEEeecCeeccc
Q 017780 323 VVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRK 364 (366)
Q Consensus 323 ~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S~d~~~gli~~k 364 (366)
.+++..+-++|.|+|+. +....--+|.-+=.++|.||+.
T Consensus 151 aa~V~~VLPNGNLvI~G---~kev~vN~e~~~i~vsGvVRP~ 189 (234)
T PRK12788 151 AAIVVDVLPNGNLLISG---SQEVRVNYEMRVLNVGGIVRPL 189 (234)
T ss_pred EEEEEEEcCCCCEEEEE---EEEEEECCCEEEEEEEEEECHH
Confidence 47899999999999984 3333334677788889999875
No 72
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=23.37 E-value=2.6e+02 Score=21.60 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=23.0
Q ss_pred EECCccEEEeeeEEEEEECCCceEEEEeCCCcEEEEcCC
Q 017780 312 QEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPD 350 (366)
Q Consensus 312 ~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~~d 350 (366)
.+..+...++ +.++|+. +|.+.+...||..+.+-..
T Consensus 16 tD~tG~f~Ve--A~fv~~~-dgkV~L~k~nG~~i~VP~~ 51 (70)
T PF03983_consen 16 TDRTGKFKVE--AEFVGVN-DGKVHLHKTNGVKIAVPLE 51 (70)
T ss_dssp EBSSS--EEE--EEEEEEE-TTEEEEE-TTS-EEEEETT
T ss_pred EeCCCCEEEE--EEEEEee-CCEEEEEecCCeEEEeEhH
Confidence 3344443444 8899985 8999999899988877543
No 73
>PF12945 YcgR_2: Flagellar protein YcgR; PDB: 2RDE_B 1YLN_A 3KYG_A.
Probab=23.04 E-value=1.1e+02 Score=23.21 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=22.1
Q ss_pred cCCCEEEEEE--CCcc-EEEeeeEEEEEECCCceEEEEeC
Q 017780 304 HSGQRVIVQE--KNED-QVVENVVTIQGLTSSGYLLAIGD 340 (366)
Q Consensus 304 ~~Gq~V~v~~--~~~~-~~~~~~G~i~GId~~G~Llv~~~ 340 (366)
..|++|.++- +++. ..+ .-++.|++++.+|.+..+
T Consensus 2 ~iG~~i~i~i~~~~~~~~~y--~S~v~g~~~~~~l~i~~P 39 (87)
T PF12945_consen 2 KIGQKIEIEITNPTGEKGRY--KSRVIGIDDDRYLIISMP 39 (87)
T ss_dssp -TT-EEEEEEE-TTS-EEEE--EEEEEEEETTTEEEEE--
T ss_pred CCCCEEEEEEECCCCceEEE--EEEEEEECCCCEEEEEcC
Confidence 4689998866 2222 123 368999999999999854
No 74
>COG2063 FlgH Flagellar basal body L-ring protein [Cell motility and secretion]
Probab=21.74 E-value=2e+02 Score=27.33 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=27.5
Q ss_pred eEEEEEECCCceEEEEeCCCcEEEEcCCCeeEEeecCeecc
Q 017780 323 VVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRR 363 (366)
Q Consensus 323 ~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S~d~~~gli~~ 363 (366)
.+++.+|.++|.|+|+.+ +.+.+. .|.-+=-++|.||+
T Consensus 150 ta~V~~VLpNGNL~I~G~--Kev~vN-~~~e~i~vsGvVRP 187 (230)
T COG2063 150 TATVVQVLPNGNLVIEGE--KEVRVN-GEKEIIRVSGVVRP 187 (230)
T ss_pred EEEEEEEcCCCCEEEEEE--EEEEEC-CceEEEEEeeeEcc
Confidence 478999999999999853 233443 45556667888876
No 75
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=21.08 E-value=3.9e+02 Score=20.53 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=22.5
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeCC
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDD 341 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~d 341 (366)
..|++|++.-..+..- -..+..+|++|.+.+.-++
T Consensus 4 ~~Ge~v~~~~~~~~~~---Yl~l~~~~~~G~v~~L~Pn 38 (83)
T PF14326_consen 4 RVGERVRFRVTSNRDG---YLYLFYIDADGKVTLLFPN 38 (83)
T ss_pred cCCCEEEEEEEeCCCe---EEEEEEECCCCCEEEEecC
Confidence 4688887765433221 2567888888888776544
No 76
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=20.84 E-value=3.2e+02 Score=22.29 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=20.7
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCC-ceEEEEeCCCcEEEEcC
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSS-GYLLAIGDDNQMCELHP 349 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~-G~Llv~~~dG~~~~l~~ 349 (366)
+.||.|++. |++..++++ +.+.++..||..+.+..
T Consensus 16 ~~gk~Vriv-----------Gkv~~~~~~g~~~~l~~~d~~~V~v~l 51 (109)
T PF08661_consen 16 FVGKTVRIV-----------GKVESVDPDGGSATLSTSDGGQVTVSL 51 (109)
T ss_dssp GTTSEEEEE-----------EEEEEE-TTSSEEEEE-TTS-EEEEEE
T ss_pred hCCCeEEEE-----------EEEeeEcCCCCEEEEEcCCCCEEEEEe
Confidence 578988874 778888855 45556655655544443
No 77
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=20.45 E-value=1.9e+02 Score=21.80 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=19.7
Q ss_pred EEEEEECCCceEEEEeCCCcEEEEcC
Q 017780 324 VTIQGLTSSGYLLAIGDDNQMCELHP 349 (366)
Q Consensus 324 G~i~GId~~G~Llv~~~dG~~~~l~~ 349 (366)
|+|..||+.. +-+..+||+.+.+.+
T Consensus 7 G~I~~id~~~-~titLdDGksy~lp~ 31 (61)
T PF07076_consen 7 GTIKSIDPET-MTITLDDGKSYKLPE 31 (61)
T ss_pred EEEEEEcCCc-eEEEecCCCEEECCC
Confidence 8999999885 555668999888744
Done!