Query 017780
Match_columns 366
No_of_seqs 287 out of 1361
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 04:49:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkx_A Biotin-[acetyl-COA-carb 100.0 1.2E-59 4E-64 459.6 25.1 252 91-354 64-323 (323)
2 2dxu_A Biotin--[acetyl-COA-car 100.0 6.5E-59 2.2E-63 435.7 27.3 229 101-355 2-233 (235)
3 2eay_A Biotin [acetyl-COA-carb 100.0 4.1E-58 1.4E-62 429.7 21.7 223 109-355 2-231 (233)
4 3rux_A BIRA bifunctional prote 100.0 1.4E-56 4.8E-61 427.8 26.5 244 91-353 12-267 (270)
5 2ej9_A Putative biotin ligase; 100.0 2.3E-56 7.8E-61 418.9 23.9 222 111-355 2-236 (237)
6 1bia_A BIRA bifunctional prote 100.0 7.6E-56 2.6E-60 432.1 28.4 249 92-355 65-317 (321)
7 3bfm_A Biotin protein ligase-l 100.0 2.7E-45 9.2E-50 343.1 21.3 211 109-353 11-232 (235)
8 2qhs_A Lipoyltransferase; glob 98.2 2.4E-05 8.3E-10 72.6 14.4 119 146-283 92-225 (237)
9 1w66_A Lipoyltransferase; lipo 97.1 0.01 3.5E-07 54.7 14.8 119 146-283 75-213 (232)
10 2p5i_A BH3822 protein; PFAM030 96.4 0.016 5.6E-07 54.8 10.7 90 146-246 89-186 (288)
11 2p0l_A Lipoate-protein ligase 96.1 0.056 1.9E-06 51.1 12.2 129 146-285 86-248 (288)
12 2c8m_A Lipoate-protein ligase 95.9 0.12 4.2E-06 47.9 13.8 128 146-284 71-223 (262)
13 1vqz_A Lipoate-protein ligase, 95.7 0.12 4E-06 50.1 12.8 124 146-284 79-222 (341)
14 2e5a_A Lipoyltransferase 1; li 94.9 0.076 2.6E-06 51.6 8.8 125 146-284 72-214 (347)
15 3a7r_A Lipoate-protein ligase 94.8 0.23 7.8E-06 48.0 11.7 147 146-308 69-248 (337)
16 2ddz_A 190AA long hypothetical 72.8 16 0.00053 32.3 8.5 104 161-285 67-178 (190)
17 1d3b_B Protein (small nuclear 62.5 15 0.0005 28.1 5.6 33 304-339 12-44 (91)
18 3s6n_G Small nuclear ribonucle 61.3 17 0.00058 26.9 5.7 33 304-339 12-44 (76)
19 1h64_1 SnRNP SM-like protein; 60.6 19 0.00065 26.4 5.8 33 304-339 12-44 (75)
20 1i4k_A Putative snRNP SM-like 58.9 22 0.00075 26.2 5.9 33 304-339 12-44 (77)
21 1th7_A SnRNP-2, small nuclear 57.4 22 0.00074 26.6 5.7 33 304-339 17-49 (81)
22 4emk_B U6 snRNA-associated SM- 56.6 24 0.00081 26.0 5.7 33 304-339 12-44 (75)
23 1mgq_A SM-like protein; LSM, R 54.9 26 0.00089 26.3 5.8 32 305-339 24-55 (83)
24 4emh_A Probable U6 snRNA-assoc 53.5 67 0.0023 25.4 8.2 33 304-339 24-56 (105)
25 1ljo_A Archaeal SM-like protei 52.7 32 0.0011 25.3 5.9 33 304-339 13-46 (77)
26 4emk_A U6 snRNA-associated SM- 52.4 29 0.00099 27.0 5.8 32 305-339 29-60 (94)
27 3bw1_A SMX4 protein, U6 snRNA- 51.8 26 0.0009 27.2 5.5 34 303-339 17-50 (96)
28 1i8f_A Putative snRNP SM-like 50.3 28 0.00097 25.9 5.3 33 304-339 19-51 (81)
29 4emk_C U6 snRNA-associated SM- 49.9 33 0.0011 27.6 5.9 33 304-339 31-63 (113)
30 1d3b_A Protein (small nuclear 47.9 79 0.0027 23.1 8.4 33 304-339 13-45 (75)
31 3s6n_F Small nuclear ribonucle 47.0 41 0.0014 25.5 5.8 33 305-340 15-47 (86)
32 1n9r_A SMF, small nuclear ribo 44.5 47 0.0016 25.6 5.9 34 304-339 29-62 (93)
33 4emg_A Probable U6 snRNA-assoc 42.9 49 0.0017 25.4 5.8 32 305-339 18-49 (93)
34 3kdf_A Replication protein A 1 42.2 53 0.0018 26.7 6.1 35 304-349 20-55 (121)
35 3pgw_B SM B; protein-RNA compl 41.1 36 0.0012 31.0 5.3 33 304-339 12-44 (231)
36 3qii_A PHD finger protein 20; 35.1 1.3E+02 0.0045 23.0 6.9 48 301-351 20-67 (85)
37 2fwk_A U6 snRNA-associated SM- 30.8 38 0.0013 27.4 3.5 33 305-340 37-69 (121)
38 3p8d_A Medulloblastoma antigen 30.5 1.6E+02 0.0054 21.5 6.9 46 303-351 7-52 (67)
39 2y9a_D Small nuclear ribonucle 30.4 2.1E+02 0.0073 23.2 8.0 33 304-339 13-45 (126)
40 1b34_A Protein (small nuclear 30.3 2.1E+02 0.0071 22.8 8.1 33 304-339 10-42 (119)
41 4hcz_A PHD finger protein 1; p 28.6 1.6E+02 0.0054 20.9 6.7 44 303-349 4-48 (58)
42 2pi2_E Replication protein A 1 27.6 1.2E+02 0.004 25.4 6.0 35 304-349 41-76 (142)
43 1b34_B Protein (small nuclear 27.3 1.1E+02 0.0039 24.4 5.7 33 304-339 37-69 (118)
44 2hbp_A Cytoskeleton assembly c 26.8 1.4E+02 0.0046 22.0 5.4 36 312-350 9-44 (68)
45 2eqj_A Metal-response element- 26.4 1.9E+02 0.0065 21.1 6.4 42 303-347 14-56 (66)
46 4gop_A Putative uncharacterize 24.7 1.2E+02 0.0042 24.1 5.5 33 304-348 16-48 (114)
47 1m5q_A SMAP3, small nuclear ri 24.1 2E+02 0.0067 23.5 6.7 34 304-340 8-41 (130)
48 2jz2_A SSL0352 protein; SH3-li 23.0 25 0.00087 25.5 0.8 26 200-226 4-38 (66)
49 3ahu_A Protein HFQ; SM-like mo 22.4 2.5E+02 0.0085 21.0 7.1 46 294-344 11-56 (78)
50 2ylb_A Protein HFQ; RNA-bindin 20.2 2.7E+02 0.0091 20.6 6.3 42 294-339 9-50 (74)
No 1
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=100.00 E-value=1.2e-59 Score=459.61 Aligned_cols=252 Identities=18% Similarity=0.286 Sum_probs=207.2
Q ss_pred CCCCCHHHHHhhcccccCCceEEEcccCCCHHHHHHHhc-cCCCCceEEEeCcccCCccCCCCeeecCCC-Cceeeeeee
Q 017780 91 QESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNF-CELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFTIQ 168 (366)
Q Consensus 91 ~~~f~~~~~~~~L~t~~~g~~li~~~~v~STn~~a~~~~-~~~~~g~vviA~~QTaGRGR~GR~W~Sp~G-~L~fSl~l~ 168 (366)
++.++++.+...|+|..+|+.++|+++++|||+++ +.+ .+.++|+||+|++||+||||+||+|+||+| +||||++++
T Consensus 64 ~~~l~~~~i~~~l~~~~~g~~i~~~~~~~STn~~a-~~~~~g~~~g~vv~A~~QTaGRGR~GR~W~Sp~G~~L~~S~~l~ 142 (323)
T 3rkx_A 64 PDIWYQGIIDQYTKSSALFDFSEVYDSIDSTQLAA-KKSLVGNQSSFFILSDEQTKGRGRFNRHWSSSKGQGLWMSVVLR 142 (323)
T ss_dssp CSSCCHHHHHHHHHTCSSCSEEEEEEEESCHHHHH-HHHTTTCCCCEEEEEEEEC------------CTTCEEEEEEEEC
T ss_pred cccCCHHHHHhhcccccCCceEEEEcCCCCHHHHH-HHHhcCCCCCEEEEECcccCCCCCCCCeeeCCCCCCEEEEEEec
Confidence 47799999999999999999999999999999999 654 357899999999999999999999999999 899999998
Q ss_pred cc-CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCCc-ceEEEeeeccCCCC
Q 017780 169 ME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKK-FNVSIGIGLNVNNE 246 (366)
Q Consensus 169 ~~-~~~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~-~~vvIGIGINvn~~ 246 (366)
|+ ++..++.+++++|+||++||++++ +.+++||||||||++||||||||+|+..+.+. .++|||||||||+.
T Consensus 143 p~~~~~~~~~lsl~~avAv~~al~~~~------~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~~~~~vViGIGiNv~~~ 216 (323)
T 3rkx_A 143 PNVAFSMISKFNLFIALGIRDAIQHFS------QDEVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINLTQQ 216 (323)
T ss_dssp CCCCTTSGGGHHHHHHHHHHHHHHTTC------SSCEEEETTTEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhc------CCceEEeCCCeEEECCEEEEEEEeEeeeCCCCCCEEEEEEEEEecCC
Confidence 86 456789999999999999999874 35799999999999999999999999887665 47999999999983
Q ss_pred ---CCcchHH-HHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCEEEEEECCccEEEee
Q 017780 247 ---EPTTCLN-AVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVEN 322 (366)
Q Consensus 247 ---~p~t~l~-~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~ 322 (366)
.|.. +. .+.+.....+..++|++|++.++++|+.+|..|.+.||.++.++|++++++.|++|++..+++. ++
T Consensus 217 ~~~~p~~-l~~~atsL~~~~g~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~--~~- 292 (323)
T 3rkx_A 217 LENFDES-IRHRATSIQLHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYNAASNIWNRTLLFTENDKQ--FK- 292 (323)
T ss_dssp GGGSCTT-TGGGBCCSGGGCSSCCCHHHHHHHHHHHHHHHHHHHHHSCGGGTHHHHHHTBSCSSSCEEEECC-CE--EE-
T ss_pred cccCCcc-cCcceeeHhhhhCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCEEEEEECCeE--EE-
Confidence 2321 11 1111111246689999999999999999999999999999999999999999999999876543 33
Q ss_pred eEEEEEECCCceEEEEeCCCcEEEEcCCCeeE
Q 017780 323 VVTIQGLTSSGYLLAIGDDNQMCELHPDGNSL 354 (366)
Q Consensus 323 ~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S~ 354 (366)
|++.|||++|+|+|++++|+++.+..|++|+
T Consensus 293 -G~~~gId~~G~Llv~~~~G~~~~~~sGevsl 323 (323)
T 3rkx_A 293 -GQAIDLDYDGYLIVRDEAGESHRLISADIDF 323 (323)
T ss_dssp -EEEEEECTTSCEEEEETTSCEEEESSCEEEC
T ss_pred -EEEEEECCCCEEEEEECCCCEEEEEEeeEEC
Confidence 9999999999999999999999999999874
No 2
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=100.00 E-value=6.5e-59 Score=435.69 Aligned_cols=229 Identities=26% Similarity=0.416 Sum_probs=202.0
Q ss_pred hhcccccCCceEEEcccCCCHHHHHHHhccCCCCceEEEeCcccCCccCCCCeeecCCCCceeeeeeecc-CCCCcchhH
Q 017780 101 NSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQME-DGRVVPLLQ 179 (366)
Q Consensus 101 ~~L~t~~~g~~li~~~~v~STn~~a~~~~~~~~~g~vviA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~-~~~~~~~ls 179 (366)
..|+|..+|+.++++++++|||++++++ +.++|++|+|++||+||||+||+|+||+|+||||++++|+ ++..++.++
T Consensus 2 ~~l~t~~~g~~i~~~~~~~STn~~~~~~--~~~~~~vv~A~~QtaGRGR~Gr~W~Sp~G~l~~S~~l~p~~~~~~~~~l~ 79 (235)
T 2dxu_A 2 LGLKTSIIGRRVIYFQEITSTNEFAKTS--YLEEGTVIVADKQTMGHGALNRKWESPEGGLWLSIVLSPKVPQKDLPKIV 79 (235)
T ss_dssp CCCCCSSTTSEEEEESSBSCHHHHHHHS--CCCTTCEEEESCBSSCBCGGGCBCCCCTTSEEEEEEECCCSCGGGGGGHH
T ss_pred CCcccccCCCeEEEECCCCCHHHHHHhc--CCCCCeEEEECccccCcCCCcCcccCCCCCeEEEEEeecCCCHHHHHHHH
Confidence 4678999999999999999999999987 6789999999999999999999999999999999999876 445688999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCCcceEEEeeeccCCCCCC--cchHHHHHH
Q 017780 180 YVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEP--TTCLNAVLR 257 (366)
Q Consensus 180 ~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~~~vvIGIGINvn~~~p--~t~l~~~l~ 257 (366)
+++|+||++||+++ | .+++||||||||++|||+||||+|+ ...++||||||||++..| .+++...
T Consensus 80 l~~alAv~~al~~~----~---~~~~iKWPNDi~~~gkKl~GIL~E~----~~~~vViGiGiNv~~~~p~~atsL~~~-- 146 (235)
T 2dxu_A 80 FLGAVGVVETLKEF----S---IDGRIKWPNDVLVNYKKIAGVLVEG----KGDKIVLGIGLNVNNKVPNGATSMKLE-- 146 (235)
T ss_dssp HHHHHHHHHHHHHT----T---CCCEEETTTEEEETTEEEEEEEEEE----CSSCEEEEEEECSSSCCCTTBCCHHHH--
T ss_pred HHHHHHHHHHHHHh----C---CCeeeeCCCEEEECCEEEEEEEEee----cCCEEEEEEEEEeCCCCCCchhhHHHh--
Confidence 99999999999986 2 5799999999999999999999998 234699999999998644 4566432
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCEEEEEECCccEEEeeeEEEEEECCCceEEE
Q 017780 258 KLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLA 337 (366)
Q Consensus 258 ~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv 337 (366)
.+..++|++|++.++++|+.+|..|. +||+.+.++|+++++ .|++|++..+++ + .|++.|||++|+|+|
T Consensus 147 ----~~~~~~r~~ll~~ll~~l~~~~~~~~-~g~~~~~~~~~~~~~-~g~~V~v~~~~~---~--~G~~~gId~~G~L~v 215 (235)
T 2dxu_A 147 ----LGSEVPLLSVFRSLITNLDRLYLNFL-KNPMDILNLVRDNMI-LGVRVKILGDGS---F--EGIAEDIDDFGRLII 215 (235)
T ss_dssp ----HTSCCCHHHHHHHHHHHHHHHHHHHH-HCTTHHHHHHHHHBC-CSSEEEC----C---C--EEEEEEECTTSCEEE
T ss_pred ----hCCCCCHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhcc-cCCeEEEEECCe---E--EEEEEEECCCCEEEE
Confidence 24578999999999999999999999 899999999999999 999999987654 2 399999999999999
Q ss_pred EeCCCcEEEEcCCCeeEE
Q 017780 338 IGDDNQMCELHPDGNSLD 355 (366)
Q Consensus 338 ~~~dG~~~~l~~dg~S~d 355 (366)
++++|+++.++++++++.
T Consensus 216 ~~~~G~~~~~~~Gev~~~ 233 (235)
T 2dxu_A 216 RLDSGEVKKVIYGDVSLR 233 (235)
T ss_dssp ECTTSCEEEECCSSCCCE
T ss_pred EECCCCEEEEEeeEEEEe
Confidence 999999999999999875
No 3
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=100.00 E-value=4.1e-58 Score=429.70 Aligned_cols=223 Identities=28% Similarity=0.473 Sum_probs=184.8
Q ss_pred CceEEEcccCCCHHHHHHHhccCCCCceEEEeCcccCCccCCCCeeecCCCCceeeeeeeccCCCCcchhHHHHHHHHHH
Q 017780 109 GRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTE 188 (366)
Q Consensus 109 g~~li~~~~v~STn~~a~~~~~~~~~g~vviA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~~glAV~~ 188 (366)
...++++++++|||+++++ .+.++|++|+|++||+||||+||+|+||+|+||||++++|.++..++.+++++|+||++
T Consensus 2 ~~~i~~~~~~~STn~~~~~--~~~~~g~vv~A~~QTaGRGR~Gr~W~Sp~G~l~~S~~l~p~~~~~~~~lsl~~~lAv~~ 79 (233)
T 2eay_A 2 FKNLIWLKEVDSTQERLKE--WNVSYGTALVADRQTKGRGRLGRKWLSQEGGLYFSFLLNPKEFENLLQLPLVLGLSVSE 79 (233)
T ss_dssp CCEEEEEEEBSCHHHHHHH--SCCCTTEEEEESCBCC------------CCEEEEEEEECTTTCCCTTHHHHHHHHHHHH
T ss_pred CccEEEEcccCCHHHHHHh--cCCCCCeEEEECCcCCCCCCCCCeeeCCCCCcEEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 3578999999999999998 56789999999999999999999999999999999999887556788999999999999
Q ss_pred HHHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCCcceEEEeeeccCCC-CCC------cchHHHHHHhhhc
Q 017780 189 AINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNN-EEP------TTCLNAVLRKLSD 261 (366)
Q Consensus 189 aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~~~vvIGIGINvn~-~~p------~t~l~~~l~~~~~ 261 (366)
||++++ +.+++||||||||++||||||||+|+..+.+ ||||||||++ +.| .+++...
T Consensus 80 al~~~~------~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~----ViGIGiNv~~~~~p~~~~~~atsL~~~------ 143 (233)
T 2eay_A 80 ALEEIT------EIPFSLKWPNDVYFQEKKVSGVLCELSKDKL----IVGIGINVNQREIPEEIKDRATTLYEI------ 143 (233)
T ss_dssp HHHHHH------CCCCEEETTTEEEETTEEEEEEEEEEETTEE----EEEEEEECSCCCCCTTTTTTBCCHHHH------
T ss_pred HHHHhc------CCCccEeCcceEEECCeEEEEEEEEeecCCC----EEEEEEEcccccCcchhhhhhhhhHHh------
Confidence 999975 2579999999999999999999999976532 9999999996 333 3444322
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeCC
Q 017780 262 STYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDD 341 (366)
Q Consensus 262 ~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~d 341 (366)
.+..++|++|++.++++|+.+|..|.++||+.++++|++++++.|++|++..+++ ++ |++.|||++|+|+|++++
T Consensus 144 ~~~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~---~~--G~~~gId~~G~L~v~~~~ 218 (233)
T 2eay_A 144 TGKDWDRKEVLLKVLKRISENLKKFKEKSFKEFKGKIESKMLYLGEEVKLLGEGK---IT--GKLVGLSEKGGALILTEE 218 (233)
T ss_dssp HSSCCCHHHHHHHHHHHHHHHHHHHHHSCGGGTHHHHHHHBTTTTSEEEETTEEE---EE--EEEEEECTTSCEEEEETT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhhcccCCEEEEEECCe---EE--EEEEEECCCCeEEEEECC
Confidence 2457899999999999999999999999999999999999999999999975443 33 999999999999999999
Q ss_pred CcEEEEcCCCeeEE
Q 017780 342 NQMCELHPDGNSLD 355 (366)
Q Consensus 342 G~~~~l~~dg~S~d 355 (366)
|+ +.++++++++.
T Consensus 219 G~-~~~~~Gev~~r 231 (233)
T 2eay_A 219 GI-KEILSGEFSLR 231 (233)
T ss_dssp EE-EEECSCCEEEC
T ss_pred Ce-EEEEEeEEEEe
Confidence 98 89999999874
No 4
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=100.00 E-value=1.4e-56 Score=427.80 Aligned_cols=244 Identities=21% Similarity=0.245 Sum_probs=206.9
Q ss_pred CCCCCHHHHHhhc-ccccCCceEEEcccCCCHHHHHHHhcc-CC-CCceEEEeCcccCCccCCCCeeecCCC-Cceeeee
Q 017780 91 QESFDVELFMNSL-ATNRFGRLLIWSPRLPSTHDVVSHNFC-EL-PVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFT 166 (366)
Q Consensus 91 ~~~f~~~~~~~~L-~t~~~g~~li~~~~v~STn~~a~~~~~-~~-~~g~vviA~~QTaGRGR~GR~W~Sp~G-~L~fSl~ 166 (366)
.+.+|++.+...| .+...++.++++++++|||+++++++. +. ++|+||+|++||+||||+||+|+||+| |||||++
T Consensus 12 ~~~L~~~~i~~~l~~~~~~~~~i~~~~~~~STN~~~~~~~~~g~~~~g~vv~A~~QTaGRGR~GR~W~Sp~G~~L~~S~~ 91 (270)
T 3rux_A 12 RPPLDERSLRDQLIGAGSGWRQLDVVAQTGSTNADLLARAASGADIDGVVLIAEHQTAGRGRHGRGWAATARAQIILSVG 91 (270)
T ss_dssp CCCCCHHHHHHHHSSTTCCCCEEEEEEEESCHHHHHHHHHHTTCCCBTEEEEEEEESSEECGGGCEECCCTTSEEEEEEE
T ss_pred CCCCCHHHHHHhhccccccCceEEEEccCCcHHHHHHHHHhcCCCCCCEEEEECccCCCCCCCCCeeeCCCCCCeEEEEE
Confidence 4669999999999 556667889999999999999988754 34 799999999999999999999999999 8999999
Q ss_pred eecc--CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCCcceEEEeeeccCC
Q 017780 167 IQME--DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVN 244 (366)
Q Consensus 167 l~~~--~~~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~~~vvIGIGINvn 244 (366)
++++ +...++.+++++|+||++||+.++... +.+++||||||||++||||||||+|... .++|||||||||
T Consensus 92 l~~~~~~~~~~~~lsl~~~lAv~~aL~~~~~~~---~~~~~iKWPNDI~~~gkKl~GIL~E~~~----~~vViGIGiNv~ 164 (270)
T 3rux_A 92 VRVVDVPVQAWGWLSLAAGLAVLDSVAPLIAVP---PAETGLKWPNDVLARGGKLAGILAEVAQ----PFVVLGVGLNVT 164 (270)
T ss_dssp EECTTSCGGGTHHHHHHHHHHHHHHHGGGSSSC---CSSCEEETTTEEEETTEEEEEEEEEEET----TEEEEEEEEESS
T ss_pred EccCCCChHHHHHHHHHHHHHHHHHHHHhcccC---CCceEEECCCeEEECCEEEEEEEEEeeC----CeEEEEEEEecc
Confidence 9986 345688999999999999999554211 3679999999999999999999999874 379999999999
Q ss_pred CCC------CcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCEEEEEECCccE
Q 017780 245 NEE------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQ 318 (366)
Q Consensus 245 ~~~------p~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~ 318 (366)
+.. +.+++.. ..+. .+|++|++.++++|+.+|..|.+. |..+.++|++++++.||+|++..+++..
T Consensus 165 ~~~~~~~~~~atSL~~------~~~~-~~r~~ll~~ll~~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~~V~v~~~~~~~ 236 (270)
T 3rux_A 165 QAPEEVDPDATSLLDL------GVAA-PDRNRIASRLLRELEARIIQWRNA-NPQLAADYRARSLTIGSRVRVELPGGQD 236 (270)
T ss_dssp CCHHHHCTTBCCTGGG------TCSS-CCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHTBSSTTSEEEEECTTSCE
T ss_pred CCccccCchhhccHHH------hcCC-CCHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHhcccCCEEEEEECCCeE
Confidence 852 2455532 1233 399999999999999999999877 9999999999999999999998654332
Q ss_pred EEeeeEEEEEECCCceEEEEeCCCcEEEEcCCCee
Q 017780 319 VVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNS 353 (366)
Q Consensus 319 ~~~~~G~i~GId~~G~Llv~~~dG~~~~l~~dg~S 353 (366)
++ |++.|||++|+|+|++++| ++.+.+|+++
T Consensus 237 -~~--G~~~gId~~G~L~v~~~~g-~~~i~sGeV~ 267 (270)
T 3rux_A 237 -VV--GIARDIDDQGRLCLDVGGR-TVVVSAGDVV 267 (270)
T ss_dssp -EE--EEEEEECTTSCEEEEETTE-EEEESSCEEE
T ss_pred -EE--EEEEEECCCCeEEEEECCC-EEEEEEEEEE
Confidence 33 9999999999999998866 6788888764
No 5
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.3e-56 Score=418.89 Aligned_cols=222 Identities=21% Similarity=0.339 Sum_probs=192.9
Q ss_pred eEEEcccCCCHHHHHHHhcc-CCCCceEEEeCcccCCccCCCCeeecCCCCceeeeeeeccCCCCcchhHHHHHHHHHHH
Q 017780 111 LLIWSPRLPSTHDVVSHNFC-ELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEA 189 (366)
Q Consensus 111 ~li~~~~v~STn~~a~~~~~-~~~~g~vviA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~~glAV~~a 189 (366)
.++++++++|||+++++.+. +.+ |++|+|++||+||||+||+|+||+|+||||++++|.+... +.+++++|+||++|
T Consensus 2 ~i~~~~~~~STn~~~~~~~~~~~~-g~vv~A~~QTaGRGR~Gr~W~Sp~G~l~~S~~l~p~~~~~-~~l~l~~~lAv~~a 79 (237)
T 2ej9_A 2 EIIHLSEIDSTNDYAKELAKEGKR-NFIVLADKQNNGKGRWGRVWYSDEGGLYFSMVLDSKLYNP-KVINLLVPICIIEV 79 (237)
T ss_dssp EEEEESCBSCHHHHHHHHHHTTCC-SEEEEESCBSSCBCGGGCBCCCCTTSEEEEEEEETTSSCH-HHHHHHHHHHHHHH
T ss_pred cEEEEeeCCCHHHHHHHHHhCCCC-CEEEEECccCCCCCCCCCeeeCCCCCeEEEeEEccccCCH-HHHHHHHHHHHHHH
Confidence 57899999999999998764 456 9999999999999999999999999999999999722222 88999999999999
Q ss_pred HHHhhhcCCCCCCCceeEecCcEEECC----EEEEEEeeeeeccCCcceEEEeeeccCCCCCC------cchHHHHHHhh
Q 017780 190 INYVCSRDGLPCLDIKIKWPNDLYLNG----IKVGGILCTSTYRTKKFNVSIGIGLNVNNEEP------TTCLNAVLRKL 259 (366)
Q Consensus 190 L~~~~~~~G~~~~~v~IKWPNDI~v~g----kKlgGILiE~~~~~~~~~vvIGIGINvn~~~p------~t~l~~~l~~~ 259 (366)
|++++ +.+++||||||||++| +||||||+|+ ...++||||||||++..| .+++...
T Consensus 80 l~~~~------~~~~~iKWPNDi~~~g~~~~kKl~GIL~E~----~~~~vViGiGiNv~~~~p~~l~~~atsL~~~---- 145 (237)
T 2ej9_A 80 LKNYV------DKELGLKFPNDIMVKVNDNYKKLGGILTEL----TDDYMIIGIGINVNNQIRNEIREIAISLKEI---- 145 (237)
T ss_dssp HTTTC------CSCEEEETTTEEEEEETTEEEEEEEEEEEE----CSSEEEEEEEECSSSCCCGGGGGTBCCHHHH----
T ss_pred HHHhh------CCCcceeCCCEEEECCCcCccEeeEEEEec----CCCeEEEEEEEecCCCCcchhhhhhccHhHh----
Confidence 99874 3579999999999999 9999999998 235799999999998533 2444322
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHhhcCCCEEEEEECCccEEEeeeEEEEEECCCceEEE
Q 017780 260 SDSTYQFRREDVIAAFFNKFETFYDTFINQ--GFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLA 337 (366)
Q Consensus 260 ~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~--gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv 337 (366)
.+..++|++|++.++++|+.+|..|.++ ||.+++++|++++++.|++|++..+++. .++ |++.|||++|+|+
T Consensus 146 --~~~~~~r~~ll~~ll~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~-~~~--G~~~gId~~G~L~- 219 (237)
T 2ej9_A 146 --TGKELDKVEILSNFLKTFESYLEKLKNKEIDDYEILKKYKKYSITIGKQVKILLSNNE-IIT--GKVYDIDFDGIVL- 219 (237)
T ss_dssp --HSSCCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHBSSTTCEEEEEETTSC-EEE--EEEEEECSSEEEE-
T ss_pred --HCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCccCCEEEEEECCCe-EEE--EEEEEECCCCeEE-
Confidence 2457899999999999999999999888 9999999999999999999999987764 133 9999999999999
Q ss_pred EeCCCcEEEEcCCCeeEE
Q 017780 338 IGDDNQMCELHPDGNSLD 355 (366)
Q Consensus 338 ~~~dG~~~~l~~dg~S~d 355 (366)
++++| ++.+.++++++.
T Consensus 220 ~~~~G-~~~~~~Gev~~~ 236 (237)
T 2ej9_A 220 GTEKG-IERIPSGICIHV 236 (237)
T ss_dssp EETTE-EEEEEGGGEEEE
T ss_pred EcCCC-CEEEEEEEEEEe
Confidence 99999 889999999873
No 6
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=100.00 E-value=7.6e-56 Score=432.10 Aligned_cols=249 Identities=23% Similarity=0.348 Sum_probs=198.9
Q ss_pred CCCCHHHHHhhcccccCCceEEEcccCCCHHHHHHHhccCCCCceEEEeCcccCCccCCCCeeecCCC-Cceeeeeeecc
Q 017780 92 ESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFTIQME 170 (366)
Q Consensus 92 ~~f~~~~~~~~L~t~~~g~~li~~~~v~STn~~a~~~~~~~~~g~vviA~~QTaGRGR~GR~W~Sp~G-~L~fSl~l~~~ 170 (366)
..+++.++...+.+ ..++++++++|||+++++.+...++|++|+|++||+||||+||+|+||+| +||||++++++
T Consensus 65 ~~L~~~eI~~~L~~----~~~~~~~~~~STn~~~~~~~~~~~~g~vv~A~~QtaGRGR~gr~W~Sp~g~~l~~S~~l~~~ 140 (321)
T 1bia_A 65 QLLNAKQILGQLDG----GSVAVLPVIDSTNQYLLDRIGELKSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLE 140 (321)
T ss_dssp CCCCHHHHHHTCCS----SCEEECSSBSCHHHHHHTTGGGCCTTCEEEESCBTTC---------CCTTSEEEEEEEEEEC
T ss_pred ccCCHHHHHHhcCC----ceEEEEEeeCChhHHHHHHHhcCCCCcEEEECccCCCCCCCCCcccCCCCCCEEEEEEEccC
Confidence 56999999888865 56999999999999999877655689999999999999999999999999 79999999876
Q ss_pred -CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCC-cceEEEeeeccCCCCCC
Q 017780 171 -DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTK-KFNVSIGIGLNVNNEEP 248 (366)
Q Consensus 171 -~~~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~-~~~vvIGIGINvn~~~p 248 (366)
++..++.+++++|+||++||+++ |. .+++||||||||++|+||||||+|+..+.+ ..++||||||||++..+
T Consensus 141 ~~~~~~~~l~l~~~~av~~al~~~----~~--~~~~iKWPNDi~~~g~Kl~GIL~E~~~~~~~~~~~viGiGiNv~~~~~ 214 (321)
T 1bia_A 141 QGPAAAIGLSLVIGIVMAEVLRKL----GA--DKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRV 214 (321)
T ss_dssp C-CCCTHHHHHHHHHHHHHHHHHT----TC--TTCEEETTTEEEETTEEEEEEEEEEEC----CEEEEEEEEEECCC---
T ss_pred CChHHHhhHHHHHHHHHHHHHHHh----CC--CCccEeCcceeeECCeeEEEEEEEeeecCCCCcEEEEEEEEecCCCcc
Confidence 44578899999999999999986 21 369999999999999999999999987654 34799999999998532
Q ss_pred -cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCEEEEEECCccEEEeeeEEEE
Q 017780 249 -TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQ 327 (366)
Q Consensus 249 -~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~ 327 (366)
+..+......+...+..++|++|++.++++|+.+|..|.++||..+.++|++++++.|++|++..+++. ++ |++.
T Consensus 215 ~~~~~~~~atsL~~~~~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~--~~--G~~~ 290 (321)
T 1bia_A 215 EESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPVKLIIGDKE--IF--GISR 290 (321)
T ss_dssp --------CCCTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHTTGGGHHHHHHHBTTTTSEEEEEETTEE--EE--EEEE
T ss_pred ccchhccccccHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhcCCEEEEEECCcE--EE--EEEE
Confidence 112222111222235678999999999999999999999999999999999999999999999987643 33 9999
Q ss_pred EECCCceEEEEeCCCcEEEEcCCCeeEE
Q 017780 328 GLTSSGYLLAIGDDNQMCELHPDGNSLD 355 (366)
Q Consensus 328 GId~~G~Llv~~~dG~~~~l~~dg~S~d 355 (366)
|||++|+|+|++++| ++.+.++++++.
T Consensus 291 gid~~G~L~v~~~~g-~~~~~~Gev~~r 317 (321)
T 1bia_A 291 GIDKQGALLLEQDGI-IKPWMGGEISLR 317 (321)
T ss_dssp EECTTSCEEEEETTE-EEEESSCEEEEC
T ss_pred EECCCCeEEEEECCC-EEEEEeeeEEEe
Confidence 999999999999999 889999999874
No 7
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=100.00 E-value=2.7e-45 Score=343.11 Aligned_cols=211 Identities=11% Similarity=0.085 Sum_probs=176.7
Q ss_pred CceEEEcccCCCHHHHHHHhcc-CCCCceEEEeCcccCCccCCCCeeecCCCCceeeeeeeccC-CCCcchhHHHHHHHH
Q 017780 109 GRLLIWSPRLPSTHDVVSHNFC-ELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMED-GRVVPLLQYVASLAL 186 (366)
Q Consensus 109 g~~li~~~~v~STn~~a~~~~~-~~~~g~vviA~~QTaGRGR~GR~W~Sp~G~L~fSl~l~~~~-~~~~~~ls~~~glAV 186 (366)
+..+.++++++|||+++++.+. +.++|+||+|+ |.++||||++++++. ...++.+++++|+||
T Consensus 11 ~~~~~~l~~~~STN~~a~~~a~~g~~~g~vv~A~---------------~g~~L~~S~~l~~~~~~~~~~~lsl~~alAv 75 (235)
T 3bfm_A 11 LMTGEAAGPGQDPFDLACQKAELGVDAGLVVYEL---------------GTDVLRAALVLAPEVPLAKAMAMLPVCGVGF 75 (235)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCCTTEEEEEE---------------CSSEEEEEEEECCSSCHHHHTTHHHHHHHHH
T ss_pred CcceeecCCCCCHHHHHHHHHhcCCCCCEEEEEc---------------CCCCEEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 4568899999999999998754 46789999999 345899999998763 345688999999999
Q ss_pred HHHHHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeecc--CC-cceEEEeeeccCCCCCC------cchHHHHHH
Q 017780 187 TEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYR--TK-KFNVSIGIGLNVNNEEP------TTCLNAVLR 257 (366)
Q Consensus 187 ~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~--~~-~~~vvIGIGINvn~~~p------~t~l~~~l~ 257 (366)
++||+++.. +...++||||||||++|||+||||+|...+ .+ ..++||||||||++..| .+++.
T Consensus 76 ~~aL~~~~~----~~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~~~~~~~vViGIGiNv~~~~~~~~~~~atsL~---- 147 (235)
T 3bfm_A 76 QNALGALAP----PEVAVHLDWNGALRINGARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEGDGGETPDETALY---- 147 (235)
T ss_dssp HHHHHHHSC----TTCCEEECTTSEEEETTEEEEEEEEEESCCCTTSCCSCEEEEEEEESSCCCSSCCCCCSCCGG----
T ss_pred HHHHHHhcC----CCcceEecCCCeEEECCeEEEEEEEEeeccCCCCCccEEEEEEEEEcCCCCcccccccccchh----
Confidence 999999852 112399999999999999999999999874 33 35799999999998643 23332
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCEEEEEECCccEEEeeeEEEEEECCCceEEE
Q 017780 258 KLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLA 337 (366)
Q Consensus 258 ~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv 337 (366)
...+..++|++|++.++++|+++|..|.+.||..++++|++++++.||+|++ . + + .|++.|||++|+|+|
T Consensus 148 --~~~~~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v--~-~---~--~G~~~gId~~G~L~v 217 (235)
T 3bfm_A 148 --AEGCADVAAPRLLESWARHCLHWINRWDEGELETIHGEWRGLAHGMGEARTE--A-G---R--SGTFLGVDEDFGMLL 217 (235)
T ss_dssp --GTTCTTCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHBTTTTSEEEE--T-T---E--EEEEEEECTTCCEEE
T ss_pred --HhhCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCEEEE--E-e---E--EEEEEEECCCCeEEE
Confidence 1235678999999999999999999999999999999999999999999999 2 2 2 399999999999999
Q ss_pred EeCCCcEEEEcCCCee
Q 017780 338 IGDDNQMCELHPDGNS 353 (366)
Q Consensus 338 ~~~dG~~~~l~~dg~S 353 (366)
++++|+ +.+..++++
T Consensus 218 ~~~~G~-~~i~~GeV~ 232 (235)
T 3bfm_A 218 RDETTT-HLIPLTTVL 232 (235)
T ss_dssp ECSSCE-EEECGGGGS
T ss_pred EeCCCe-EEEEeeeeE
Confidence 999997 888887765
No 8
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=98.20 E-value=2.4e-05 Score=72.56 Aligned_cols=119 Identities=17% Similarity=0.077 Sum_probs=77.6
Q ss_pred CccCCCCeeecCCCCceeeeeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCcee-EecCcEEECCEEEEEEee
Q 017780 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKI-KWPNDLYLNGIKVGGILC 224 (366)
Q Consensus 146 GRGR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~I-KWPNDI~v~gkKlgGILi 224 (366)
.|-|.|..=+--+|++.+..++.... ..-..--...-+|.++|+++ | +++.. +++|||+++|+|||||-+
T Consensus 92 rr~rGGgavyH~pGqlv~Y~i~~~~~--~~~~~~~~l~~~ii~~L~~l----G---i~a~~~~g~~dv~v~grKIag~g~ 162 (237)
T 2qhs_A 92 WVERGGDVTYHGPGQLVGYPIFPVGR--EVRRFLRQIEEAIVRVAAGY----G---ISAYPTPGYAGVWVGEDKLCAIGV 162 (237)
T ss_dssp ECCSSSSEEEECTTEEEEEEECCCTT--CHHHHHHHHHHHHHHHHHHT----T---CCCBCCSSSSSEEETTEEEEEEEE
T ss_pred EEcCCCEEEEECCCCEEEEEEEECCc--CHHHHHHHHHHHHHHHHHHc----C---CcEEEeCCCCCEEECCcEEEEEeE
Confidence 46788888778888864333343322 11111122345677777765 4 45556 689999999999999998
Q ss_pred eeeccCCcceEEEeeeccCCCCC-------C-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 017780 225 TSTYRTKKFNVSIGIGLNVNNEE-------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFY 283 (366)
Q Consensus 225 E~~~~~~~~~vvIGIGINvn~~~-------p-------~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~ 283 (366)
.... ..+.-|+.||++.+. | .+++...+ +..++.+++...+++.|.+.|
T Consensus 163 ~~~~----~~~~hg~aLnv~~dl~~f~~i~p~g~~~~~vtSl~~~l------~~~~~~~ev~~~l~~~f~~~~ 225 (237)
T 2qhs_A 163 AVKE----GVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLL------GRKVPMEEAKARVVAAFAEVF 225 (237)
T ss_dssp EEET----TEEEEEEEEESSCCGGGGGGBCCCSSCCSEECCHHHHH------TSCCCHHHHHHHHHHHHHHHH
T ss_pred EeeC----CeEEEeEEEecccChHHhcCcCcCccCCCcEEeHHHhh------CCCCCHHHHHHHHHHHHHHHh
Confidence 7421 245679999998751 1 24444322 357889999988888887654
No 9
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=97.14 E-value=0.01 Score=54.73 Aligned_cols=119 Identities=18% Similarity=0.153 Sum_probs=78.8
Q ss_pred CccCCCCeeecCCCCceeeeeeeccCCCCcchhHH--HHHHHHHHHHHHhhhcCCCCCCCceeEe-cCcEEEC---CEEE
Q 017780 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQY--VASLALTEAINYVCSRDGLPCLDIKIKW-PNDLYLN---GIKV 219 (366)
Q Consensus 146 GRGR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~--~~glAV~~aL~~~~~~~G~~~~~v~IKW-PNDI~v~---gkKl 219 (366)
.|.|.|..-+--+|++.+.+++.... ......+ ...-+|.++|+++ | ++...+= .|||+++ |+||
T Consensus 75 r~~rGG~~tYHgPGQlv~Y~Il~l~~--~~~v~~~v~~le~~vI~~L~~~----G---i~a~~~~g~~gV~v~~~~~rKI 145 (232)
T 1w66_A 75 DTDRGGKITWHGPGQLVGYPIIGLAE--PLDVVNYVRRLEESLIQVCADL----G---LHAGRVDGRSGVWLPGRPARKV 145 (232)
T ss_dssp ECSSSSSEEEECTTEEEEEEECBBCS--SCCHHHHHHHHHHHHHHHHHHT----T---CCCEEETTEEEEEECSSSCEEE
T ss_pred EecCCCceEEECCCCeEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHHc----C---CCeEecCCCCeEEecCCCCCEE
Confidence 56888887778889988888887543 2222222 2345777888775 4 4555442 4899999 9999
Q ss_pred EEEeeeeeccCCcceEEEeeeccCCCCC-------C-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 017780 220 GGILCTSTYRTKKFNVSIGIGLNVNNEE-------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFY 283 (366)
Q Consensus 220 gGILiE~~~~~~~~~vvIGIGINvn~~~-------p-------~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~ 283 (366)
|||=+-.. .....=|+-+|++.+. | .+|+...+ +..++.+++...+.++|.+.+
T Consensus 146 aaig~r~~----~~vt~HG~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~l------g~~~~~~ev~~~l~~~f~~~~ 213 (232)
T 1w66_A 146 AAIGVRVS----RATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAEL------GRTVTVDEVRATVAAAVCAAL 213 (232)
T ss_dssp EEEEEEEE----TTEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHH------TSCCCHHHHHHHHHHHHHHHH
T ss_pred EEeeeeee----CCEEEcceEEecCcChHHhcCccccccCCCceeeeHHHh------CCCCCHHHHHHHHHHHHHHHh
Confidence 99877432 1234588889998751 1 24444221 356888898888888887654
No 10
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=96.44 E-value=0.016 Score=54.80 Aligned_cols=90 Identities=20% Similarity=0.103 Sum_probs=52.5
Q ss_pred CccCCCCeeecCCCCceeeeeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCcee--------EecCcEEECCE
Q 017780 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKI--------KWPNDLYLNGI 217 (366)
Q Consensus 146 GRGR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~I--------KWPNDI~v~gk 217 (366)
.|-|.|+.=+-.+|+|.+|++.+......+-..--...-.|.++|+++ |+ ++.. .=.|||.++|+
T Consensus 89 RR~sGGgaVyHdpG~l~ysli~~~~~~~~v~~~y~~l~~~ii~~L~~l----Gi---~a~~~~~~~~~c~g~~dl~v~gr 161 (288)
T 2p5i_A 89 VRNSGGLAVVLDSGILNLSLVLKEEKGFSIDDGYELMYELICSMFQDH----RE---QIEAREIVGSYCPGSYDLSIDGK 161 (288)
T ss_dssp EESSCCCCEEECTTEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC-------C---CCEECCCTTSSSCCTTCEEETTE
T ss_pred EEcCCCceEEECCCcEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHc----CC---cEEEeccccCCCCCCccEEECCE
Confidence 466778877777789999998865311111111112334555555543 42 2322 11499999999
Q ss_pred EEEEEeeeeeccCCcceEEEeeeccCCCC
Q 017780 218 KVGGILCTSTYRTKKFNVSIGIGLNVNNE 246 (366)
Q Consensus 218 KlgGILiE~~~~~~~~~vvIGIGINvn~~ 246 (366)
||||+=.=... ..+..|+-||++.+
T Consensus 162 KI~G~Aqr~~~----~~~lhh~~l~v~~d 186 (288)
T 2p5i_A 162 KFAGISQRRIR----GGVAVQIYLCVSGS 186 (288)
T ss_dssp EEEEEEEEEET----TEEEEEEEEECSSC
T ss_pred EEEEEEEEEeC----CEEEEEEEEEecCC
Confidence 99998543321 23567888898864
No 11
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3
Probab=96.06 E-value=0.056 Score=51.11 Aligned_cols=129 Identities=20% Similarity=0.110 Sum_probs=71.0
Q ss_pred CccCCCCeeecCCCCceeeeeeeccCCCCcch--hHHHHHHHHHHHHHHhhhcCCCCCCCcee--------EecCcEEEC
Q 017780 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPL--LQYVASLALTEAINYVCSRDGLPCLDIKI--------KWPNDLYLN 215 (366)
Q Consensus 146 GRGR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~--ls~~~glAV~~aL~~~~~~~G~~~~~v~I--------KWPNDI~v~ 215 (366)
.|-|.|+.=+-.+|++.+|++.+......... .--...-.|.++|++ +|+ ++.. .=.|||.++
T Consensus 86 RR~sGGgaVyHdpG~l~ysli~~~~~~~~~~i~~~y~~l~~~ii~aL~~----lGi---~a~~~~~~~~~c~g~~Dl~v~ 158 (288)
T 2p0l_A 86 VRNFGGLAVVADEGILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSD----FYQ---PIEHFEVETSYCPGKFDLSIN 158 (288)
T ss_dssp ECTTCCSCEEESTTEEEEEEEEESCC---CCHHHHHHHHHHHHHHHTTT----SCS---CCEECCCTTSSSCCTTCEEET
T ss_pred EEcCCCCeEEECCCcEEEEEEEcCccccCCCHHHHHHHHHHHHHHHHHH----cCC---cEEEccccCCCCCCCccEEEC
Confidence 46677776666777999999986541111111 111223445555544 342 2322 114999999
Q ss_pred CEEEEEEeeeeeccCCcceEEEeeeccCCCCCCc--ch----HHHHHHh-----------------hh-cCCCCCCHHHH
Q 017780 216 GIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPT--TC----LNAVLRK-----------------LS-DSTYQFRREDV 271 (366)
Q Consensus 216 gkKlgGILiE~~~~~~~~~vvIGIGINvn~~~p~--t~----l~~~l~~-----------------~~-~~~~~~~r~~L 271 (366)
|+||||+=.=.. ...+..|.-||++.+... .. ....+.. +. ..+..++.+++
T Consensus 159 grKI~G~Aqr~~----~~~~lhh~sl~v~~dl~~~~~~l~~~~~~~l~~~~~k~~~~gi~~~~VtsL~~~l~~~~~~~~v 234 (288)
T 2p0l_A 159 GKKFAGLAQRRI----KNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIMANLSDLLDCPMTVEDV 234 (288)
T ss_dssp TEEEEEEEEEEE----TTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCCTTSBCCHHHHTTCCCCHHHH
T ss_pred CEEEEEEeEEEe----CCEEEEEEEEEecCCHHHHHHHHHHHHHHhcCCccccccccccchhheeeHHHHcCCCCCHHHH
Confidence 999999855332 123567888888864211 00 0000000 00 01235788899
Q ss_pred HHHHHHHHHHHHHH
Q 017780 272 IAAFFNKFETFYDT 285 (366)
Q Consensus 272 l~~ll~~~~~~~~~ 285 (366)
...+.+.|.+.+..
T Consensus 235 ~~~l~~~f~~~~~~ 248 (288)
T 2p0l_A 235 IDRMLISLKQVGFN 248 (288)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCC
Confidence 88888888776643
No 12
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=95.95 E-value=0.12 Score=47.89 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=73.0
Q ss_pred CccCCCCeeecCCCCceeeeeeeccCCCCcc-hhHHHHHHHHHHHHHHhhhcCCCC-------CCCceeEecCcEEECCE
Q 017780 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVP-LLQYVASLALTEAINYVCSRDGLP-------CLDIKIKWPNDLYLNGI 217 (366)
Q Consensus 146 GRGR~GR~W~Sp~G~L~fSl~l~~~~~~~~~-~ls~~~glAV~~aL~~~~~~~G~~-------~~~v~IKWPNDI~v~gk 217 (366)
.|-|.|+.=+..+|+|.+|++.+.... ... .. -...-.+.++|+++ |++ ..+....=.|||+++|+
T Consensus 71 rR~sGGgavyhd~G~l~ys~i~~~~~~-~~~~~y-~~l~~~ii~~l~~l----Gi~~~~~~~~~~~a~~~g~~dv~v~g~ 144 (262)
T 2c8m_A 71 RRYTGGGAVYHDLGDLNFSVVRSSDDM-DITSMF-RTMNEAVVNSLRIL----GLDARPGELNDVSIPVNKKTDIMAGEK 144 (262)
T ss_dssp ECSSCSCCEEECTTEEEEEEEEECSSC-CHHHHH-HHHHHHHHHHHHHT----TCCCEECCBCCTTSSSSBTTSEEETTE
T ss_pred EECCCCceEEeCCCcEEEEEEEcCCCC-CHHHHH-HHHHHHHHHHHHHc----CCCcccccccCCcceECCcCcEEECCe
Confidence 455666655555689999999865321 111 12 12445666777654 431 00233333599999999
Q ss_pred EEEEEeeeeeccCCcceEEEeeeccCCCCCC---------cchHHHH-H-------HhhhcCCCCCCHHHHHHHHHHHHH
Q 017780 218 KVGGILCTSTYRTKKFNVSIGIGLNVNNEEP---------TTCLNAV-L-------RKLSDSTYQFRREDVIAAFFNKFE 280 (366)
Q Consensus 218 KlgGILiE~~~~~~~~~vvIGIGINvn~~~p---------~t~l~~~-l-------~~~~~~~~~~~r~~Ll~~ll~~~~ 280 (366)
||||+=.=.. ...+..|.-||++.+.. ...+... . ..+.+.. .++.+++...+.+.|.
T Consensus 145 Ki~G~aqr~~----~~~~lhhgtllv~~d~~~~~~~l~~~~~~~~~~g~~s~~~~vtsL~~~~-~~~~~~v~~~l~~~~~ 219 (262)
T 2c8m_A 145 KIMGAAGAMR----KGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFV-DVSIDEVRNALIRGFS 219 (262)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGTS-CCCHHHHHHHHHHHHH
T ss_pred EEEEeeeEEe----CCEEEEEEEEEecCCHHHHHHHhCCChhhhhhhccccHHhhhccHHHhc-CCCHHHHHHHHHHHHH
Confidence 9999855332 12467888899986410 0001000 0 0111112 5789999999988887
Q ss_pred HHHH
Q 017780 281 TFYD 284 (366)
Q Consensus 281 ~~~~ 284 (366)
+.+.
T Consensus 220 ~~~~ 223 (262)
T 2c8m_A 220 ETLH 223 (262)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 7763
No 13
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=95.66 E-value=0.12 Score=50.14 Aligned_cols=124 Identities=13% Similarity=0.117 Sum_probs=76.1
Q ss_pred CccCCCCeeecCCCCceeeeeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeee
Q 017780 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCT 225 (366)
Q Consensus 146 GRGR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE 225 (366)
.|-|.|..=+-.+|+|.+|++.+........ .. ...-.|.++|+++ | +++.+.=.|||+++|+||||+=.=
T Consensus 79 RR~sGGgaVyHd~G~l~ys~i~~~~~~~~~~-y~-~l~~~ii~aL~~l----G---i~a~~~gr~Di~v~grKIsG~Aqr 149 (341)
T 1vqz_A 79 RRISGGGAVYHDLNNLNYTIISKEDENKAFD-FK-SFSTPVINTLAQL----G---VKAEFTGRNDLEIDGKKFCGNAQA 149 (341)
T ss_dssp ECSSCSCCEEECTTEEEEEEEEECCTTCCCS-HH-HHHHHHHHHHHHT----T---CCEEEETTTEEEETTEEEEEEEEE
T ss_pred EECCCCCeEEECCCceEEEEEEcCcccCCcc-HH-HHHHHHHHHHHHc----C---CeEEECCCCCEEEeCEEEEEEEEE
Confidence 4667777666778889999988643221111 22 3345677777764 4 456665569999999999998553
Q ss_pred eeccCCcceEEEeeeccCCCCCCcchHHHHH-------------------Hhhhc-CCCCCCHHHHHHHHHHHHHHHHH
Q 017780 226 STYRTKKFNVSIGIGLNVNNEEPTTCLNAVL-------------------RKLSD-STYQFRREDVIAAFFNKFETFYD 284 (366)
Q Consensus 226 ~~~~~~~~~vvIGIGINvn~~~p~t~l~~~l-------------------~~~~~-~~~~~~r~~Ll~~ll~~~~~~~~ 284 (366)
.. ...+..|.-||++.+.. .+...+ ..+.+ .+..++.+++...+.+.|.+.+.
T Consensus 150 ~~----~~~~lhhgtllvd~Dl~--~~~~~L~~~~~k~~~kgv~s~~~~VtsL~~~l~~~~~~~~v~~~l~~~f~~~~~ 222 (341)
T 1vqz_A 150 YI----NGRIMHHGCLLFDVDLS--VLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYP 222 (341)
T ss_dssp EE----TTEEEEEEEEESSCCTT--HHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCT
T ss_pred EE----CCEEEEEEEEEecCCHH--HHHHHhCCCccchhhcccccchhhheeHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 32 12466888888875421 011000 00111 12358899999999888877653
No 14
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=94.94 E-value=0.076 Score=51.57 Aligned_cols=125 Identities=18% Similarity=0.145 Sum_probs=71.3
Q ss_pred CccCCCCeeecCCCCceeeeeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECC-EEEEEEee
Q 017780 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNG-IKVGGILC 224 (366)
Q Consensus 146 GRGR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~g-kKlgGILi 224 (366)
.|-+.|..=+..+|++.+|++.+.... ... ...-.|.++|+++ |. ++++...=.|||+++| +||||+=.
T Consensus 72 RR~sGGgaVyHd~G~l~ys~i~~~~~~---~~~--~~~~~ii~~L~~l----G~-~i~a~~~g~~di~v~g~~KIsG~Aq 141 (347)
T 2e5a_A 72 RRRSGGGTVYHDMGNINLTFFTTKKKY---DRM--ENLKLVVRALKAV----HP-HLDVQATKRFDLLLDGQFKISGTAS 141 (347)
T ss_dssp ECSSCSCCEEECTTEEEEEEEECGGGC---CHH--HHHHHHHHHHHHH----ST-TCCEEECTTSCEEETTTEEEECEEE
T ss_pred EECCCCCcEEECCCcEEEEEEeccccC---CHH--HHHHHHHHHHHHh----CC-ceEEEECCCCcEEECCCcEEEEEeE
Confidence 455667766667888999998754321 111 2345677777775 31 1455555459999998 99999833
Q ss_pred eeeccCCcceEEEeeeccCCCCC----------Cc-------chHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 017780 225 TSTYRTKKFNVSIGIGLNVNNEE----------PT-------TCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (366)
Q Consensus 225 E~~~~~~~~~vvIGIGINvn~~~----------p~-------t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~ 284 (366)
.... ..+..+.-||++.+. |. +++......+.+-...++.+++...++++|.+.|.
T Consensus 142 -~~~~---~~~lhhgtll~~~d~~~l~~~l~~~~~~~~~kgv~Sv~~~v~~L~~~~~~~~~~~v~~~l~~~f~~~~~ 214 (347)
T 2e5a_A 142 -KIGR---NAAYHHCTLLCGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQ 214 (347)
T ss_dssp -EECS---SCEEEEEEEESSCCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -EeeC---CeEEEEEEEEEecCHHHHHHHHccCchhhhhhcccchHHhhccHHHhCCCCCHHHHHHHHHHHHHHHhC
Confidence 2221 123445556665431 10 01100000000012357899999999998887764
No 15
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=94.79 E-value=0.23 Score=47.97 Aligned_cols=147 Identities=20% Similarity=0.177 Sum_probs=85.3
Q ss_pred CccCCCCeeecCCCCceeeeeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEE---CC-EEEEE
Q 017780 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYL---NG-IKVGG 221 (366)
Q Consensus 146 GRGR~GR~W~Sp~G~L~fSl~l~~~~~~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v---~g-kKlgG 221 (366)
.|-|.|..=+..+|+|.+|++.+.... . .. ...-.|.++|+++ | +++...=.|||++ +| +||||
T Consensus 69 RR~sGGgaVyHd~G~l~ys~i~~~~~~---~-y~-~l~~~ii~~L~~l----G---i~a~~~g~~di~v~~~~g~rKIsG 136 (337)
T 3a7r_A 69 RRSSGGGAVFHDLGNTCFTFMAGKPEY---D-KT-ISTSIVLNALNAL----G---VSAEASGRNDLVVKTVEGDRKVSG 136 (337)
T ss_dssp ECSSCSCCEEECTTEEEEEEEEETTTC---C-HH-HHHHHHHHHHHHT----T---CCEEEETTTEEEECCTTSCEEEEE
T ss_pred EEcCCCccEEECCCcEEEEEEECCccc---C-HH-HHHHHHHHHHHHc----C---CeEEECCCCcEEEEeCCCceEEEE
Confidence 456777766777899999998864321 1 11 2345677777664 4 4566655799999 89 99999
Q ss_pred EeeeeeccCCcceEEEeeeccCCCCC----------Cc-------chHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 017780 222 ILCTSTYRTKKFNVSIGIGLNVNNEE----------PT-------TCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (366)
Q Consensus 222 ILiE~~~~~~~~~vvIGIGINvn~~~----------p~-------t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~ 284 (366)
+=.=.. ...+..|.-||++.+. |. ++.......+.+....++.+++...+.++|.+.+.
T Consensus 137 ~Aqr~~----~~~~lhhgtll~~~dl~~l~~~l~~~~~~~~~kgv~sv~~~vt~L~~~~~~~~~~~v~~~l~~~f~~~~~ 212 (337)
T 3a7r_A 137 SAYRET----KDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYG 212 (337)
T ss_dssp EEEEEC----SSEEEEEEEEESSCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEE----CCEEEEEEEEEecCCHHHHHHHhcCChhhhhhcCCCchhhheeEHHHhCCCCCHHHHHHHHHHHHHHHcC
Confidence 854322 1246678778887541 10 00000000011111247899999999998887764
Q ss_pred H-H-----Hh---cChHHHHHHH---HHHhhcCCCE
Q 017780 285 T-F-----IN---QGFQTLEELY---YKTWLHSGQR 308 (366)
Q Consensus 285 ~-~-----~~---~gf~~l~~~y---~~~~~~~Gq~ 308 (366)
. + .. ..++.+.+.| ....+..|+.
T Consensus 213 ~~~~~~~l~~~e~~~~~~l~~ky~~l~s~eW~~g~~ 248 (337)
T 3a7r_A 213 ERVEAEIISPNKTPDLPNFAETFARQSSWEWNFGQA 248 (337)
T ss_dssp CCCCCEEECTTSCCCCTTHHHHHHHHHSHHHHTTTS
T ss_pred CCCceecCCHHHHHHHHHHHHHHHHhcCcccccCCC
Confidence 2 1 11 1234566666 4333455764
No 16
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=72.83 E-value=16 Score=32.31 Aligned_cols=104 Identities=19% Similarity=0.252 Sum_probs=58.5
Q ss_pred ceeeeeeec-cCC--CCcchhHHHHHHHHHHHHHHhhhcCCCCCCCceeEecCcEEECCEEEEEEeeeeeccCCcceEEE
Q 017780 161 LMFSFTIQM-EDG--RVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSI 237 (366)
Q Consensus 161 L~fSl~l~~-~~~--~~~~~ls~~~glAV~~aL~~~~~~~G~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~~~vvI 237 (366)
-+..|++.- +.+ ......|-+...-+.+.|++. |. --.+==.|||++|+|+.=-...... ...-|
T Consensus 67 dmlhFIvEhFD~~dl~~~y~rQRLlv~i~kE~L~~~----g~----~~~R~GDDLy~~~~KLSVSIAt~s~----vS~kI 134 (190)
T 2ddz_A 67 DMVHYILELFWHPDILLASSLQKLLIARLVELLWNY----GI----EASRRGDDIYVNGRKLSISIATVSP----VSIKI 134 (190)
T ss_dssp EEEEEEEEECSCCCHHHHHHHHHHHHHHHHHHHHTT----TC----CEEEETTEEEETTEECEEEEEEECS----SCEEE
T ss_pred cceEEEEeeCCCccHHHHHHHHHHHHHHHHHHHHHc----CC----eeeeccCeeeECCCEEEEEEEecCc----chheE
Confidence 466666643 221 122334545555566677643 32 2244568999999998643333222 22447
Q ss_pred eeeccCCCC-CC----cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHH
Q 017780 238 GIGLNVNNE-EP----TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDT 285 (366)
Q Consensus 238 GIGINvn~~-~p----~t~l~~~l~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~ 285 (366)
=+||||... .| +..|.+. + ++..++.+.+..++.+-++.
T Consensus 135 H~GiNV~s~g~P~~V~aigL~dl-------G--i~i~~~~~~i~~~y~~E~~~ 178 (190)
T 2ddz_A 135 HIGLNVKTVGVPPGVDAIGLEEL-------G--IDPTEFMERSAKALVEEIEK 178 (190)
T ss_dssp EEEEESCCSSCCSSSCBCCHHHH-------T--CCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecccCCCCCccccCHHHc-------C--CCHHHHHHHHHHHHHHHHHH
Confidence 789999864 23 3455432 2 37777877777666554443
No 17
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=62.53 E-value=15 Score=28.13 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=28.2
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|+|...++... .|++.|+|....|++.+
T Consensus 12 ~~~k~V~V~l~~gr~~---~G~L~~~D~~mNlvL~d 44 (91)
T 1d3b_B 12 HIDYRMRCILQDGRIF---IGTFKAFDKHMNLILCD 44 (91)
T ss_dssp GTTSEEEEEETTCCEE---EEEEEECCTTCCEEEEE
T ss_pred HcCCcEEEEECCCeEE---EEEEEEECCCCeEEecC
Confidence 5799999999887643 49999999999999975
No 18
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=61.26 E-value=17 Score=26.88 Aligned_cols=33 Identities=9% Similarity=0.089 Sum_probs=26.8
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|+|...++.. + .|++.|+|+.-.|++.+
T Consensus 12 ~~~k~V~V~Lk~gr~-~--~G~L~~~D~~mNlvL~~ 44 (76)
T 3s6n_G 12 FMDKKLSLKLNGGRH-V--QGILRGFDPFMNLVIDE 44 (76)
T ss_dssp --CCEEEEEETTTEE-E--EEEEEEECTTCCEEEEE
T ss_pred hCCCeEEEEECCCcE-E--EEEEEEECCcceEEEec
Confidence 469999999988754 3 49999999999999975
No 19
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=60.61 E-value=19 Score=26.38 Aligned_cols=33 Identities=12% Similarity=0.006 Sum_probs=27.9
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|+|...++.. + .|++.|+|+.-.+++.+
T Consensus 12 ~~~~~V~V~l~~g~~-~--~G~L~~~D~~mNlvL~d 44 (75)
T 1h64_1 12 SLDKDVLVILKKGFE-F--RGRLIGYDIHLNVVLAD 44 (75)
T ss_dssp TTTSEEEEEETTSEE-E--EEEEEEECTTCCEEEEE
T ss_pred HCCCEEEEEECCCCE-E--EEEEEEEeCCCCeEEee
Confidence 469999999988754 3 49999999999999975
No 20
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=58.93 E-value=22 Score=26.16 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=27.9
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|+|...++.. + .|++.|+|+.-.+++.+
T Consensus 12 ~~~~~V~V~L~~g~~-~--~G~L~~~D~~mNlvL~d 44 (77)
T 1i4k_A 12 SLKSPVIVRLKGGRE-F--RGTLDGYDIHMNLVLLD 44 (77)
T ss_dssp TTTSEEEEEETTSCE-E--EEEEEEECTTCCEEEEE
T ss_pred hCCCEEEEEEcCCCE-E--EEEEEEEcCCCCeEEee
Confidence 459999999988764 3 49999999999999975
No 21
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=57.41 E-value=22 Score=26.57 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=27.7
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|+|...++.. + .|++.|+|+.-.+++.+
T Consensus 17 ~~~~~V~V~l~~g~~-~--~G~L~~~D~~mNlvL~d 49 (81)
T 1th7_A 17 SLNNLVLVKLKGNKE-V--RGMLRSYDQHMNLVLSD 49 (81)
T ss_dssp HTTSEEEEEETTTEE-E--EEEEEEECTTCCEEEEE
T ss_pred hCCCeEEEEEcCCcE-E--EEEEEEEcCCCCEEEcc
Confidence 368999999987754 3 49999999999999975
No 22
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=56.55 E-value=24 Score=25.99 Aligned_cols=33 Identities=12% Similarity=0.033 Sum_probs=27.7
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|.|...++.. + .|++.|+|+.-.|++.+
T Consensus 12 ~~~k~V~V~Lk~g~~-~--~G~L~~~D~~mNlvL~d 44 (75)
T 4emk_B 12 VIGKKVLIRLSSGVD-Y--KGILSCLDGYMNLALER 44 (75)
T ss_dssp TTTSEEEEECTTSCE-E--EEEEEEECTTCEEEEEE
T ss_pred hCCCeEEEEEcCCcE-E--EEEEEEEcCcceEEEcc
Confidence 369999999987764 3 49999999999999975
No 23
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=54.94 E-value=26 Score=26.32 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=27.2
Q ss_pred CCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
.|++|.|...++.. + .|++.|+|+.-.+++.+
T Consensus 24 ~~~~V~V~Lk~g~~-~--~G~L~~~D~~mNlvL~d 55 (83)
T 1mgq_A 24 LNSPVIIKLKGDRE-F--RGVLKSFDLHMNLVLND 55 (83)
T ss_dssp TTSEEEEEETTTEE-E--EEEEEEECTTCCEEEEE
T ss_pred CCCEEEEEEcCCcE-E--EEEEEEECCCceeEEcc
Confidence 58999999987654 3 49999999999999975
No 24
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=53.46 E-value=67 Score=25.42 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=26.6
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|+|...++.. + .|++.|+|+.=.|++.+
T Consensus 24 ~igk~V~V~Lk~G~~-~--~G~L~~~D~~MNlvL~d 56 (105)
T 4emh_A 24 TQGRPILVELKNGET-F--NGHLENCDNYMNLTLRE 56 (105)
T ss_dssp --CCEEEEEETTSCE-E--EEEEEEECTTCCEEEEE
T ss_pred hCCCEEEEEECCCCE-E--EEEEEEEcCCceEEEEE
Confidence 359999999988764 3 49999999999999875
No 25
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=52.73 E-value=32 Score=25.30 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=27.7
Q ss_pred cCCCEEEEEECCc-cEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNE-DQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~-~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|+|...++ .. + .|++.|+|+.-.|++.+
T Consensus 13 ~~~~~v~V~lk~g~~~-~--~G~L~~~D~~mNlvL~d 46 (77)
T 1ljo_A 13 MVGKIIRVEMKGEENQ-L--VGKLEGVDDYMNLYLTN 46 (77)
T ss_dssp TTTSEEEEEETTCSSE-E--EEEEEEECTTCCEEEEE
T ss_pred HCCCEEEEEEeCCCEE-E--EEEEEEECCcceEEEee
Confidence 4689999999877 54 3 39999999999999975
No 26
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=52.38 E-value=29 Score=27.01 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=27.1
Q ss_pred CCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
.|++|.|...++.. + .|+++|+|+.-.|++.+
T Consensus 29 l~k~V~V~Lk~gr~-~--~G~L~gfD~~mNlvL~d 60 (94)
T 4emk_A 29 IGSNLWVIMKSERE-F--AGTLVGFDDYVNIVLKD 60 (94)
T ss_dssp TTSEEEEEESSSEE-E--EEEEEEECTTCCEEEEE
T ss_pred cCCeEEEEECCCcE-E--EEEEEEEcccCCeEeee
Confidence 68999999987754 3 49999999999999975
No 27
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=51.77 E-value=26 Score=27.16 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=28.4
Q ss_pred hcCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 303 LHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 303 ~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
-..|++|.|...++... .|+++|+|+.-.|++.+
T Consensus 17 ~~i~k~V~V~Lk~gr~~---~G~L~~fD~~mNlVL~d 50 (96)
T 3bw1_A 17 LNLDERVYIKLRGARTL---VGTLQAFDSHCNIVLSD 50 (96)
T ss_dssp GGTTSEEEEEEGGGCEE---EEEEEEECTTCCEEEEE
T ss_pred HHCCCeEEEEECCCcEE---EEEEEEECCCCcEEEcC
Confidence 35799999999877643 49999999999999975
No 28
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=50.31 E-value=28 Score=25.94 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=27.5
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|.|...++.. + .|++.++|+.-.|++.+
T Consensus 19 ~~~~~V~V~l~~g~~-~--~G~L~~~D~~mNlvL~d 51 (81)
T 1i8f_A 19 SIGKQVLVKLRDSHE-I--RGILRSFDQHVNLLLED 51 (81)
T ss_dssp TTTSEEEEEEGGGEE-E--EEEEEEECTTCCEEEEE
T ss_pred HCCCeEEEEEcCCcE-E--EEEEEEEcCCCeeEEcc
Confidence 358999999887654 3 49999999999999975
No 29
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=49.89 E-value=33 Score=27.60 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=27.6
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
++|++|.|...++... .|++.|+|....|++.+
T Consensus 31 ~l~k~V~V~L~dGr~~---~G~L~~fD~~mNLVL~d 63 (113)
T 4emk_C 31 YQDQRIQATFTGGRQI---TGILKGFDQLMNLVLDD 63 (113)
T ss_dssp -CCSEEEEEETTSCEE---EEEEEEECTTCCEEEEE
T ss_pred HcCCcEEEEEeCCeEE---EEEEEEEcCcccEEEee
Confidence 4799999999877643 49999999999999975
No 30
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=47.94 E-value=79 Score=23.13 Aligned_cols=33 Identities=6% Similarity=-0.051 Sum_probs=27.6
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|+|+..++.. + .|++.|+|+.=.+.+.+
T Consensus 13 ~~g~~V~VeLk~g~~-~--~G~L~~~D~~MNl~L~~ 45 (75)
T 1d3b_A 13 AEGHIVTCETNTGEV-Y--RGKLIEAEDNMNCQMSN 45 (75)
T ss_dssp TTTSEEEEEETTSCE-E--EEEEEEECTTCCEEEEE
T ss_pred hCCCEEEEEECCCcE-E--EEEEEEEccceeEEEEe
Confidence 469999999988764 3 49999999998888875
No 31
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=46.97 E-value=41 Score=25.51 Aligned_cols=33 Identities=12% Similarity=0.032 Sum_probs=27.7
Q ss_pred CCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeC
Q 017780 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 340 (366)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~ 340 (366)
.|++|.|...++.. + .|++.|+|+.-.|++.+.
T Consensus 15 ~~k~V~V~Lk~g~~-~--~G~L~~~D~~mNlvL~d~ 47 (86)
T 3s6n_F 15 TGKPVMVKLKWGME-Y--KGYLVSVDGYMNMQLANT 47 (86)
T ss_dssp TTSEEEEEETTSCE-E--EEEEEEECTTCCEEEEEE
T ss_pred CCCeEEEEEcCCeE-E--EEEEEEEcCceEEEEeeE
Confidence 59999999988764 3 499999999999998753
No 32
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=44.48 E-value=47 Score=25.63 Aligned_cols=34 Identities=18% Similarity=-0.090 Sum_probs=27.6
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|.|...+++..+ .|++.|+|+.=.|++.+
T Consensus 29 ~i~k~V~V~Lk~g~~~~--~G~L~~~D~~MNlvL~d 62 (93)
T 1n9r_A 29 LVNHRVGVKLKFNSTEY--RGTLVSTDNYFNLQLNE 62 (93)
T ss_dssp GTTSEEEEEESSTTEEE--EEEEEECCTTTCEEEEE
T ss_pred hCCCEEEEEEcCCCEEE--EEEEEEEccccEEEEee
Confidence 46999999998772334 49999999999999875
No 33
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=42.90 E-value=49 Score=25.45 Aligned_cols=32 Identities=6% Similarity=0.035 Sum_probs=27.2
Q ss_pred CCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
.|++|.|...++.. + .|++.|+|+.-.|++.+
T Consensus 18 ~~~~V~V~l~~gr~-~--~G~L~~~D~~mNlvL~d 49 (93)
T 4emg_A 18 LDEIVYVKLRGDRE-L--NGRLHAYDEHLNMVLGD 49 (93)
T ss_dssp TTSEEEEEETTTEE-E--EEEEEEECTTCCEEEEE
T ss_pred CCCEEEEEECCCcE-E--EEEEEEECCcccEEeec
Confidence 58999999987654 3 49999999999999975
No 34
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=42.16 E-value=53 Score=26.69 Aligned_cols=35 Identities=6% Similarity=0.132 Sum_probs=25.4
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCc-eEEEEeCCCcEEEEcC
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSG-YLLAIGDDNQMCELHP 349 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G-~Llv~~~dG~~~~l~~ 349 (366)
+.||+|++. |++..++++| .+.++..||..+.+.-
T Consensus 20 fvgk~Vriv-----------GkV~~~~~~g~~~~l~s~Dg~~Vtv~l 55 (121)
T 3kdf_A 20 FIDKPVCFV-----------GRLEKIHPTGKMFILSDGEGKNGTIEL 55 (121)
T ss_dssp GTTCEEEEE-----------EEEEEECTTSSEEEEECTTSCEEEEEC
T ss_pred hCCCeEEEE-----------EEEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence 578998874 7888998766 6667777776655544
No 35
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=41.09 E-value=36 Score=31.02 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=27.6
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
++|++|+|...++.. + +|+++++|..-.|++.+
T Consensus 12 lIdKrV~V~LkdGRe-l--~GtLkgFDq~MNLVL~D 44 (231)
T 3pgw_B 12 HIDYRMRCILQDGRI-F--IGTFKAFDKHMNLILCD 44 (231)
T ss_pred hcCCeEEEEECCCcE-E--EEEEEEEcccccEEecC
Confidence 479999999887764 3 49999999999999864
No 36
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=35.13 E-value=1.3e+02 Score=22.97 Aligned_cols=48 Identities=6% Similarity=-0.010 Sum_probs=36.2
Q ss_pred HhhcCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeCCCcEEEEcCCC
Q 017780 301 TWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDG 351 (366)
Q Consensus 301 ~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~~dg 351 (366)
..+..|.+|.-...+.. .+. |+|..|+.+|.-.|.-.||....+....
T Consensus 20 ~~f~vGd~VlArW~D~~-yYP--AkI~sV~~~~~YtV~F~DG~~etvk~~~ 67 (85)
T 3qii_A 20 SEFQINEQVLACWSDCR-FYP--AKVTAVNKDGTYTVKFYDGVVQTVKHIH 67 (85)
T ss_dssp -CCCTTCEEEEECTTSC-EEE--EEEEEECTTSEEEEEETTSCEEEEEGGG
T ss_pred cccccCCEEEEEeCCCC-Eee--EEEEEECCCCeEEEEEeCCCeEEecHHH
Confidence 45678999988885443 443 8999999999888887778877776543
No 37
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=30.80 E-value=38 Score=27.41 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=27.4
Q ss_pred CCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeC
Q 017780 305 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 340 (366)
Q Consensus 305 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~ 340 (366)
.|++|+|...++.. + .|+++|+|+.-.|++.+.
T Consensus 37 l~k~V~V~Lk~Gr~-~--~G~L~~fD~~mNlVL~d~ 69 (121)
T 2fwk_A 37 IGNRIYVVMKGDKE-F--SGVLRGFDEYVNMVLDDV 69 (121)
T ss_dssp BTSBCEEEETTTEE-E--CCEEEEECTTCCEEEESC
T ss_pred cCCeEEEEECCCcE-E--EEEEEEEcccCCeEeceE
Confidence 47889999987764 3 499999999999999754
No 38
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=30.45 E-value=1.6e+02 Score=21.46 Aligned_cols=46 Identities=7% Similarity=0.023 Sum_probs=34.6
Q ss_pred hcCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeCCCcEEEEcCCC
Q 017780 303 LHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDG 351 (366)
Q Consensus 303 ~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~~dg 351 (366)
+..|.+|.....+. ..+. |+|..|+.+|.-.|.-.||....+....
T Consensus 7 ~~vGd~vmArW~D~-~yYp--A~I~si~~~~~Y~V~F~dG~~etvk~~~ 52 (67)
T 3p8d_A 7 FQINEQVLACWSDC-RFYP--AKVTAVNKDGTYTVKFYDGVVQTVKHIH 52 (67)
T ss_dssp CCTTCEEEEECTTS-CEEE--EEEEEECTTSEEEEEETTSCEEEEEGGG
T ss_pred cccCCEEEEEcCCC-CEee--EEEEEECCCCeEEEEEeCCceEEEeHHH
Confidence 46789998887444 3444 8999999999888887778877776543
No 39
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=30.41 E-value=2.1e+02 Score=23.19 Aligned_cols=33 Identities=6% Similarity=-0.051 Sum_probs=27.5
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|+|+..++.. + .|++.++|+.=.+.+.+
T Consensus 13 ~~gk~V~VeLknG~~-~--~G~L~~~D~~MNi~L~d 45 (126)
T 2y9a_D 13 AEGHIVTCETNTGEV-Y--RGKLIEAEDNMNCQMSN 45 (126)
T ss_dssp CSSCEEEEEESSCCE-E--EEEEEEECTTSCEEEEE
T ss_pred hCCCEEEEEECCCcE-E--EEEEEEEcCceEEEEee
Confidence 579999999988764 3 49999999998888874
No 40
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=30.33 E-value=2.1e+02 Score=22.84 Aligned_cols=33 Identities=30% Similarity=0.178 Sum_probs=27.5
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|.|...++.. + .|++.++|+.=.|++.+
T Consensus 10 ~~gk~V~V~Lk~g~~-~--~G~L~~~D~~MNlvL~d 42 (119)
T 1b34_A 10 LSHETVTIELKNGTQ-V--HGTITGVDVSMNTHLKA 42 (119)
T ss_dssp CTTCEEEEEETTCCE-E--EEEEEEECTTCCEEEEE
T ss_pred hCCCEEEEEEcCCCE-E--EEEEEEEcccceEEecc
Confidence 469999999987764 3 49999999999999875
No 41
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=28.56 E-value=1.6e+02 Score=20.92 Aligned_cols=44 Identities=20% Similarity=0.114 Sum_probs=33.4
Q ss_pred hcCCCEEEEEECCccEEEeeeEEEEEECCCc-eEEEEeCCCcEEEEcC
Q 017780 303 LHSGQRVIVQEKNEDQVVENVVTIQGLTSSG-YLLAIGDDNQMCELHP 349 (366)
Q Consensus 303 ~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G-~Llv~~~dG~~~~l~~ 349 (366)
+..|+.|-+.-.++... .|+|+.|+..+ .-+|+-+||...-+..
T Consensus 4 f~~GedVLarwsDG~fY---lGtI~~V~~~~~~clV~F~D~s~~W~~~ 48 (58)
T 4hcz_A 4 LWEGQDVLARWTDGLLY---LGTIKKVDSAREVCLVQFEDDSQFLVLW 48 (58)
T ss_dssp CCTTCEEEEECTTSCEE---EEEEEEEETTTTEEEEEETTSCEEEEEG
T ss_pred cccCCEEEEEecCCCEE---eEEEEEEecCCCEEEEEEcCCCeEEEEh
Confidence 45799999988777653 48999999886 7778888887655443
No 42
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=27.57 E-value=1.2e+02 Score=25.38 Aligned_cols=35 Identities=3% Similarity=0.059 Sum_probs=25.4
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCC-ceEEEEeCCCcEEEEcC
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSS-GYLLAIGDDNQMCELHP 349 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~-G~Llv~~~dG~~~~l~~ 349 (366)
+.||+|++. |++..++++ +.+.++..||..+.+.-
T Consensus 41 fvGk~VriV-----------GkV~~~~~~G~~~~l~s~Dg~~VtV~l 76 (142)
T 2pi2_E 41 FIDKPVCFV-----------GRLEKIHPTGKMFILSDGEGKNGTIEL 76 (142)
T ss_dssp STTCEEEEE-----------EEEEEECTTSSEEEEECTTSCEEEEEC
T ss_pred hCCCEEEEE-----------EEEeEEcCCCCEEEEEeCCCcEEEEEe
Confidence 458888874 788999854 56677777777766653
No 43
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=27.25 E-value=1.1e+02 Score=24.36 Aligned_cols=33 Identities=6% Similarity=0.247 Sum_probs=27.3
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
..|++|.|...++... .|++.|+|..-.|++.+
T Consensus 37 ~~~k~V~V~Lk~gr~~---~G~L~~fD~~mNlvL~d 69 (118)
T 1b34_B 37 KNNTQVLINCRNNKKL---LGRVKAFDRHCNMVLEN 69 (118)
T ss_dssp HHTCEEEEEETTSCEE---EEEEEEECTTCCEEEEE
T ss_pred cCCcEEEEEECCCcEE---EEEEEEeCCceEEEEeC
Confidence 3479999999887653 49999999999999975
No 44
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=26.77 E-value=1.4e+02 Score=21.98 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=27.0
Q ss_pred EECCccEEEeeeEEEEEECCCceEEEEeCCCcEEEEcCC
Q 017780 312 QEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPD 350 (366)
Q Consensus 312 ~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~~d 350 (366)
.+..+...++ +.+.|+. +|.+.+...||..+.+-..
T Consensus 9 tDrtG~F~Ve--A~flg~~-dgki~LhK~nGv~I~VP~~ 44 (68)
T 2hbp_A 9 VDRSGTFKVD--AEFIGCA-KGKIHLHKANGVKIAVAAD 44 (68)
T ss_dssp EBSSSCCEEE--EEEEEEE-TTEEEEECTTSCEEEEETT
T ss_pred EcCCCCeEEE--EEEEEEe-CCEEEEEecCCcEEEeEhH
Confidence 3444454554 8899998 8999999999998888554
No 45
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=26.41 E-value=1.9e+02 Score=21.08 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=32.7
Q ss_pred hcCCCEEEEEECCccEEEeeeEEEEEECCC-ceEEEEeCCCcEEEE
Q 017780 303 LHSGQRVIVQEKNEDQVVENVVTIQGLTSS-GYLLAIGDDNQMCEL 347 (366)
Q Consensus 303 ~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~-G~Llv~~~dG~~~~l 347 (366)
+..|+.|.....++.. + .|+|+.|+.. |.-+|+-+||...-+
T Consensus 14 f~vGddVLA~wtDGl~-Y--~gtI~~V~~~~gtC~V~F~D~s~~w~ 56 (66)
T 2eqj_A 14 FEEGQDVLARWSDGLF-Y--LGTIKKINILKQSCFIIFEDSSKSWV 56 (66)
T ss_dssp SCTTCEEEEECTTSCE-E--EEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred ccCCCEEEEEEccCcE-E--EeEEEEEccCCcEEEEEEccCCEEEE
Confidence 5679999998766653 3 3899999985 999999888876544
No 46
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=24.66 E-value=1.2e+02 Score=24.08 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=23.3
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeCCCcEEEEc
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELH 348 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~~~l~ 348 (366)
+.||+|++. |++..++. +.+.+...||..+.+.
T Consensus 16 ~~g~~Vriv-----------GkV~~~~g-~~~~l~s~d~~~Vtv~ 48 (114)
T 4gop_A 16 YVGQTVRIV-----------GKVHKVTG-NTLLMQTSDLGNVEIA 48 (114)
T ss_dssp GTTSEEEEE-----------EEEEEEET-TEEEEECTTSCEEEEE
T ss_pred hCCCeEEEE-----------EEEeeeCC-CEEEEEeCCCCEEEEE
Confidence 578988875 67777776 7888887666555544
No 47
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=24.13 E-value=2e+02 Score=23.55 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=28.2
Q ss_pred cCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeC
Q 017780 304 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 340 (366)
Q Consensus 304 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~ 340 (366)
..|++|.|...++.. + .|++.|+|+.=.|++.+.
T Consensus 8 ~igk~V~V~Lk~G~~-~--~G~L~~~D~~MNlvL~d~ 41 (130)
T 1m5q_A 8 LLGREVQVVLSNGEV-Y--KGVLHAVDNQLNIVLANA 41 (130)
T ss_dssp TTTSEEEEEETTSCE-E--EEEEEEECTTCCEEEEEE
T ss_pred hCCCeEEEEECCCcE-E--EEEEEEEcccceeEEeeE
Confidence 579999999988764 3 499999999999998753
No 48
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=22.96 E-value=25 Score=25.52 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=19.7
Q ss_pred CCCCceeEecCcEEEC---------CEEEEEEeeee
Q 017780 200 PCLDIKIKWPNDLYLN---------GIKVGGILCTS 226 (366)
Q Consensus 200 ~~~~v~IKWPNDI~v~---------gkKlgGILiE~ 226 (366)
|+..+++|=|||+|+. ++| +|+|.|.
T Consensus 4 PG~~V~V~np~~~Yy~y~G~VQRvsdgk-aaVLFEG 38 (66)
T 2jz2_A 4 PGATVRVTNVDDTYYRFEGLVQRVSDGK-AAVLFEN 38 (66)
T ss_dssp TTCEEEECCTTSTTBTCEEEEEEEETTE-EEEEEES
T ss_pred CCCEEEEeCCCCcccceeEEEEEecCCc-EEEEecC
Confidence 5567999999999985 233 6788874
No 49
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=22.44 E-value=2.5e+02 Score=21.05 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEeCCCcE
Q 017780 294 LEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQM 344 (366)
Q Consensus 294 l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~~dG~~ 344 (366)
+.+.|.+.+-..+.+|++...++.+. .|.|.|.|.. .++++ .+|..
T Consensus 11 lQd~fLn~lrk~~~~Vtv~L~nG~~l---~G~I~~fD~f-~VlL~-~~g~q 56 (78)
T 3ahu_A 11 IQDQFLNQIRKENTYVTVFLLNGFQL---RGQVKGFDNF-TVLLE-SEGKQ 56 (78)
T ss_dssp HHHHHHHHHHHHTCCEEEEETTSCEE---EEEEEEECSS-EEEEE-SSSCE
T ss_pred hHHHHHHHHHHcCCcEEEEEeCCeEE---EEEEEEEcce-EEEEE-ECCee
Confidence 45556666666678899988877654 4999999965 45555 35544
No 50
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=20.22 E-value=2.7e+02 Score=20.57 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCCEEEEEECCccEEEeeeEEEEEECCCceEEEEe
Q 017780 294 LEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 339 (366)
Q Consensus 294 l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~Llv~~ 339 (366)
+.+.|.+.+...+.+|++...++.+. .|++.+.|.. .+++++
T Consensus 9 lQd~~L~~lrk~k~~Vti~L~nG~~l---~G~I~~fD~f-~vlL~~ 50 (74)
T 2ylb_A 9 LQDPFLNALRRERVPVSIYLVNGIKL---QGQIESFDQF-VILLKN 50 (74)
T ss_dssp CHHHHHHHHHHHTCCEEEEETTSCEE---EEEEEEECSS-EEEEES
T ss_pred cHHHHHHHHHhcCCcEEEEEeCCCEE---EEEEEEECCc-EEEEEC
Confidence 34455566666678999998887764 4999999977 455553
Done!