Query 017781
Match_columns 366
No_of_seqs 249 out of 2006
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:22:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538 Glycolate oxidase [Ene 100.0 3.5E-91 7.6E-96 642.8 29.6 353 4-356 1-358 (363)
2 PLN02493 probable peroxisomal 100.0 7.5E-84 1.6E-88 626.5 35.0 358 3-360 2-363 (367)
3 PLN02535 glycolate oxidase 100.0 9.7E-81 2.1E-85 605.5 34.0 354 2-358 3-360 (364)
4 PRK11197 lldD L-lactate dehydr 100.0 1.2E-80 2.7E-85 607.3 34.8 350 3-353 2-377 (381)
5 TIGR02708 L_lactate_ox L-lacta 100.0 1.5E-79 3.3E-84 597.0 35.5 347 2-355 11-362 (367)
6 cd04736 MDH_FMN Mandelate dehy 100.0 1.1E-79 2.4E-84 596.8 33.8 338 8-348 1-361 (361)
7 cd03332 LMO_FMN L-Lactate 2-mo 100.0 1.1E-78 2.4E-83 594.6 35.1 347 4-351 18-383 (383)
8 cd04737 LOX_like_FMN L-Lactate 100.0 9.6E-78 2.1E-82 583.7 34.2 343 3-351 4-351 (351)
9 PF01070 FMN_dh: FMN-dependent 100.0 1.2E-76 2.6E-81 579.5 32.8 339 14-352 1-356 (356)
10 cd02922 FCB2_FMN Flavocytochro 100.0 2.5E-74 5.5E-79 559.9 35.4 335 8-349 1-344 (344)
11 PLN02979 glycolate oxidase 100.0 1E-69 2.2E-74 523.3 32.2 317 45-361 43-363 (366)
12 COG1304 idi Isopentenyl diphos 100.0 9.7E-65 2.1E-69 492.7 25.9 345 7-356 1-353 (360)
13 cd02809 alpha_hydroxyacid_oxid 100.0 1.5E-58 3.3E-63 444.3 33.9 295 8-348 1-299 (299)
14 cd02811 IDI-2_FMN Isopentenyl- 100.0 4.2E-39 9.1E-44 312.6 25.8 266 38-348 17-326 (326)
15 PRK05437 isopentenyl pyrophosp 100.0 7.3E-39 1.6E-43 313.5 25.5 275 40-355 27-340 (352)
16 TIGR02151 IPP_isom_2 isopenten 100.0 1.6E-37 3.5E-42 302.3 25.1 272 41-353 21-331 (333)
17 TIGR01306 GMP_reduct_2 guanosi 100.0 3.8E-29 8.3E-34 239.7 23.2 251 42-352 3-311 (321)
18 PRK05458 guanosine 5'-monophos 100.0 1.1E-28 2.3E-33 237.5 25.5 250 42-351 6-313 (326)
19 TIGR01305 GMP_reduct_1 guanosi 100.0 2.1E-27 4.6E-32 226.0 23.5 252 41-349 8-329 (343)
20 cd02808 GltS_FMN Glutamate syn 99.9 7.7E-26 1.7E-30 224.8 25.6 267 58-352 59-390 (392)
21 PRK08649 inosine 5-monophospha 99.9 1.2E-25 2.6E-30 220.5 23.8 285 42-353 17-367 (368)
22 TIGR01304 IMP_DH_rel_2 IMP deh 99.9 2.6E-25 5.7E-30 217.6 19.7 285 42-352 14-368 (369)
23 cd00381 IMPDH IMPDH: The catal 99.9 2.1E-24 4.5E-29 209.6 22.8 253 42-351 3-321 (325)
24 PF00478 IMPDH: IMP dehydrogen 99.9 1.4E-23 2.9E-28 203.4 21.9 252 42-350 4-336 (352)
25 PRK06843 inosine 5-monophospha 99.9 3.6E-23 7.8E-28 204.0 24.1 252 41-349 10-381 (404)
26 PRK05096 guanosine 5'-monophos 99.9 7.3E-23 1.6E-27 195.0 21.5 252 41-349 9-330 (346)
27 TIGR01037 pyrD_sub1_fam dihydr 99.9 1.4E-22 3.1E-27 194.9 22.2 234 61-349 1-298 (300)
28 cd04739 DHOD_like Dihydroorota 99.9 1.2E-21 2.5E-26 190.6 25.1 235 60-349 1-302 (325)
29 PRK07259 dihydroorotate dehydr 99.9 1.1E-21 2.5E-26 188.8 24.1 235 60-349 1-298 (301)
30 PRK07565 dihydroorotate dehydr 99.9 2.6E-21 5.6E-26 188.9 25.1 236 60-350 2-305 (334)
31 cd04740 DHOD_1B_like Dihydroor 99.9 4.8E-21 1E-25 184.0 24.1 233 62-349 1-295 (296)
32 PRK10415 tRNA-dihydrouridine s 99.9 4.6E-21 9.9E-26 186.0 20.0 245 64-350 2-283 (321)
33 PLN02495 oxidoreductase, actin 99.9 1.4E-20 3.1E-25 185.2 22.7 248 56-351 6-337 (385)
34 PRK07107 inosine 5-monophospha 99.9 9.5E-21 2.1E-25 193.0 22.0 136 214-349 271-472 (502)
35 COG0167 PyrD Dihydroorotate de 99.9 2.7E-20 5.9E-25 177.6 22.3 236 60-351 1-308 (310)
36 COG0042 tRNA-dihydrouridine sy 99.9 9.9E-21 2.1E-25 183.4 19.3 246 65-351 4-285 (323)
37 PTZ00314 inosine-5'-monophosph 99.9 4.7E-20 1E-24 188.0 25.1 140 209-348 265-466 (495)
38 PLN02826 dihydroorotate dehydr 99.9 8.9E-20 1.9E-24 181.3 25.5 119 224-350 261-407 (409)
39 TIGR00737 nifR3_yhdG putative 99.9 6.9E-20 1.5E-24 177.8 21.7 242 66-349 2-280 (319)
40 cd02940 DHPD_FMN Dihydropyrimi 99.8 6.3E-20 1.4E-24 176.6 19.9 211 60-310 1-286 (299)
41 PRK10550 tRNA-dihydrouridine s 99.8 9.7E-20 2.1E-24 175.8 20.8 236 72-349 1-276 (312)
42 PF01645 Glu_synthase: Conserv 99.8 1.4E-20 3E-25 183.6 14.9 245 68-341 62-368 (368)
43 TIGR01302 IMP_dehydrog inosine 99.8 6.2E-20 1.3E-24 185.7 20.1 298 42-347 3-449 (450)
44 PRK02506 dihydroorotate dehydr 99.8 2.1E-19 4.6E-24 173.6 21.8 237 60-349 1-306 (310)
45 TIGR01303 IMP_DH_rel_1 IMP deh 99.8 2.1E-19 4.6E-24 182.0 21.8 137 213-349 253-456 (475)
46 PRK08318 dihydropyrimidine deh 99.8 2.6E-19 5.5E-24 180.1 21.4 244 59-351 2-320 (420)
47 PLN02274 inosine-5'-monophosph 99.8 3.2E-19 7E-24 182.1 22.4 136 212-349 275-473 (505)
48 TIGR00742 yjbN tRNA dihydrouri 99.8 3.1E-19 6.7E-24 172.7 20.7 233 73-349 2-277 (318)
49 PRK05567 inosine 5'-monophosph 99.8 3.2E-19 7E-24 182.2 21.9 137 213-349 256-455 (486)
50 PRK05286 dihydroorotate dehydr 99.8 7.1E-19 1.5E-23 172.3 21.7 228 56-339 44-344 (344)
51 cd04741 DHOD_1A_like Dihydroor 99.8 7.7E-18 1.7E-22 161.7 20.5 219 63-335 1-294 (294)
52 PF01207 Dus: Dihydrouridine s 99.8 8.9E-19 1.9E-23 169.2 12.9 236 75-352 1-273 (309)
53 cd04738 DHOD_2_like Dihydrooro 99.8 1.1E-17 2.4E-22 162.8 19.5 233 32-311 9-315 (327)
54 PRK11815 tRNA-dihydrouridine s 99.8 6.5E-18 1.4E-22 164.8 17.8 238 68-349 7-287 (333)
55 PRK07807 inosine 5-monophospha 99.8 5.1E-17 1.1E-21 164.9 20.5 137 213-349 255-458 (479)
56 COG0069 GltB Glutamate synthas 99.8 5.7E-17 1.2E-21 161.6 19.7 254 68-349 163-476 (485)
57 cd02810 DHOD_DHPD_FMN Dihydroo 99.7 1E-16 2.2E-21 153.4 20.1 203 63-310 1-277 (289)
58 PRK11750 gltB glutamate syntha 99.7 1.6E-16 3.5E-21 174.5 22.2 249 72-347 859-1166(1485)
59 cd02801 DUS_like_FMN Dihydrour 99.7 1.6E-16 3.5E-21 146.8 17.6 196 73-310 1-218 (231)
60 PF01180 DHO_dh: Dihydroorotat 99.7 9.1E-17 2E-21 154.4 15.1 115 213-335 150-295 (295)
61 TIGR01036 pyrD_sub2 dihydrooro 99.7 8.8E-16 1.9E-20 149.8 19.5 100 212-311 190-323 (335)
62 cd02911 arch_FMN Archeal FMN-b 99.7 4.1E-16 8.9E-21 144.8 15.9 184 73-307 1-222 (233)
63 KOG2550 IMP dehydrogenase/GMP 99.7 5.9E-16 1.3E-20 149.1 12.3 302 40-349 29-476 (503)
64 KOG1436 Dihydroorotate dehydro 99.7 3.5E-15 7.6E-20 139.6 16.9 288 33-349 58-396 (398)
65 TIGR03151 enACPred_II putative 99.7 1.4E-14 3.1E-19 139.8 20.8 179 65-313 7-198 (307)
66 PF03060 NMO: Nitronate monoox 99.6 3.8E-14 8.2E-19 138.3 20.0 196 65-312 7-226 (330)
67 KOG2335 tRNA-dihydrouridine sy 99.6 2.6E-14 5.6E-19 136.9 15.0 194 75-310 22-238 (358)
68 TIGR00736 nifR3_rel_arch TIM-b 99.5 8E-14 1.7E-18 128.7 14.2 149 123-311 68-226 (231)
69 cd04730 NPD_like 2-Nitropropan 99.5 8.8E-12 1.9E-16 115.6 20.4 184 71-318 2-198 (236)
70 COG2070 Dioxygenases related t 99.4 5.7E-12 1.2E-16 122.9 16.0 98 213-314 116-222 (336)
71 cd04742 NPD_FabD 2-Nitropropan 99.3 9.1E-11 2E-15 116.7 19.9 214 65-311 9-254 (418)
72 cd04743 NPD_PKS 2-Nitropropane 99.3 7E-11 1.5E-15 113.8 18.5 177 71-312 2-209 (320)
73 PRK13523 NADPH dehydrogenase N 99.3 4.4E-11 9.5E-16 117.0 15.9 98 211-310 193-310 (337)
74 cd04722 TIM_phosphate_binding 99.3 3.6E-10 7.8E-15 100.2 17.4 181 74-306 1-200 (200)
75 TIGR02814 pfaD_fam PfaD family 99.2 1.8E-09 3.9E-14 108.2 20.6 213 70-312 17-260 (444)
76 cd04734 OYE_like_3_FMN Old yel 99.2 1.3E-09 2.7E-14 107.1 17.8 98 211-310 192-320 (343)
77 KOG1799 Dihydropyrimidine dehy 99.1 1.5E-10 3.3E-15 109.9 9.6 253 49-351 91-423 (471)
78 cd02932 OYE_YqiM_FMN Old yello 99.1 6.2E-09 1.3E-13 101.9 20.4 100 210-311 204-326 (336)
79 PRK01130 N-acetylmannosamine-6 99.1 8.5E-09 1.8E-13 95.0 17.4 169 91-310 26-207 (221)
80 cd02803 OYE_like_FMN_family Ol 99.1 1.7E-09 3.6E-14 105.3 13.4 98 211-310 192-316 (327)
81 cd04729 NanE N-acetylmannosami 99.0 1.6E-08 3.4E-13 93.1 17.4 95 213-310 111-211 (219)
82 PF04131 NanE: Putative N-acet 99.0 2.5E-08 5.3E-13 88.5 17.5 91 214-310 82-178 (192)
83 KOG2333 Uncharacterized conser 99.0 4.6E-09 9.9E-14 103.7 13.5 203 69-311 262-496 (614)
84 cd04747 OYE_like_5_FMN Old yel 99.0 1.8E-08 3.9E-13 99.4 17.5 98 211-311 195-334 (361)
85 cd04735 OYE_like_4_FMN Old yel 99.0 3.2E-09 6.9E-14 104.7 10.5 101 211-311 195-319 (353)
86 cd02930 DCR_FMN 2,4-dienoyl-Co 99.0 2E-08 4.4E-13 99.0 15.9 99 211-311 188-312 (353)
87 cd04733 OYE_like_2_FMN Old yel 98.9 1.9E-08 4.1E-13 98.6 13.0 99 210-310 199-327 (338)
88 cd02933 OYE_like_FMN Old yello 98.9 3E-08 6.6E-13 97.1 14.0 96 211-310 203-319 (338)
89 cd02931 ER_like_FMN Enoate red 98.9 3.3E-08 7.2E-13 98.4 13.6 100 210-311 201-341 (382)
90 PRK04180 pyridoxal biosynthesi 98.7 8.2E-08 1.8E-12 90.5 11.0 93 215-310 111-239 (293)
91 TIGR00262 trpA tryptophan synt 98.7 1.1E-06 2.4E-11 82.8 18.8 50 262-313 186-235 (256)
92 PRK10605 N-ethylmaleimide redu 98.7 2.7E-06 5.8E-11 84.3 21.7 94 212-311 211-327 (362)
93 COG1902 NemA NADH:flavin oxido 98.7 7.2E-07 1.6E-11 88.0 16.4 98 212-311 201-324 (363)
94 cd02929 TMADH_HD_FMN Trimethyl 98.6 3.9E-07 8.5E-12 90.4 13.4 98 211-310 201-324 (370)
95 PRK08255 salicylyl-CoA 5-hydro 98.6 2.6E-07 5.7E-12 99.8 13.1 99 211-311 602-723 (765)
96 PRK00278 trpC indole-3-glycero 98.6 6.7E-07 1.5E-11 84.5 13.8 77 232-311 166-246 (260)
97 COG3010 NanE Putative N-acetyl 98.6 4.2E-06 9.2E-11 74.9 16.9 82 225-309 126-213 (229)
98 PRK13125 trpA tryptophan synth 98.5 8.6E-06 1.9E-10 76.3 18.4 50 262-312 172-221 (244)
99 CHL00200 trpA tryptophan synth 98.5 1.2E-05 2.7E-10 76.0 19.3 48 264-313 192-239 (263)
100 cd00331 IGPS Indole-3-glycerol 98.5 6.5E-06 1.4E-10 75.5 17.0 75 234-311 129-207 (217)
101 cd04727 pdxS PdxS is a subunit 98.5 2E-06 4.4E-11 80.9 12.5 94 214-310 101-230 (283)
102 PRK06552 keto-hydroxyglutarate 98.4 1.3E-05 2.9E-10 73.5 16.7 170 125-310 14-188 (213)
103 PRK00507 deoxyribose-phosphate 98.4 5.5E-06 1.2E-10 76.4 13.3 89 214-307 109-210 (221)
104 cd04724 Tryptophan_synthase_al 98.4 2.6E-05 5.7E-10 73.0 18.1 49 262-313 175-223 (242)
105 PRK09140 2-dehydro-3-deoxy-6-p 98.4 4.7E-05 1E-09 69.6 18.9 169 126-310 12-184 (206)
106 PRK13585 1-(5-phosphoribosyl)- 98.4 1.4E-05 3E-10 74.5 15.3 69 239-310 159-227 (241)
107 TIGR00343 pyridoxal 5'-phospha 98.4 4.6E-06 1E-10 78.6 11.7 94 214-310 103-233 (287)
108 TIGR00007 phosphoribosylformim 98.4 3.4E-06 7.5E-11 78.0 10.9 70 239-311 155-224 (230)
109 PRK01033 imidazole glycerol ph 98.3 4.1E-06 8.8E-11 79.2 10.6 70 239-311 162-232 (258)
110 PRK13111 trpA tryptophan synth 98.3 7.9E-05 1.7E-09 70.4 19.0 49 262-313 188-236 (258)
111 cd04732 HisA HisA. Phosphorib 98.3 6.3E-06 1.4E-10 76.3 11.3 70 239-311 156-225 (234)
112 KOG0399 Glutamate synthase [Am 98.3 5.6E-06 1.2E-10 89.3 11.6 138 212-349 1080-1269(2142)
113 PRK14024 phosphoribosyl isomer 98.3 2.3E-06 5E-11 80.0 7.8 70 239-311 156-228 (241)
114 PLN02591 tryptophan synthase 98.3 0.00011 2.5E-09 68.9 19.1 48 263-312 178-225 (250)
115 cd00452 KDPG_aldolase KDPG and 98.2 4.9E-05 1.1E-09 68.4 15.5 166 126-309 6-175 (190)
116 cd04731 HisF The cyclase subun 98.2 4.8E-06 1E-10 77.8 8.9 70 239-311 159-229 (243)
117 PRK07695 transcriptional regul 98.2 2.7E-05 5.8E-10 70.7 12.8 90 217-310 86-182 (201)
118 PF00724 Oxidored_FMN: NADH:fl 98.2 7E-06 1.5E-10 80.7 9.5 98 212-311 201-327 (341)
119 cd04728 ThiG Thiazole synthase 98.2 1.1E-05 2.4E-10 74.7 9.9 68 239-310 141-209 (248)
120 TIGR00126 deoC deoxyribose-pho 98.2 2.7E-05 5.9E-10 71.3 12.2 88 213-305 104-204 (211)
121 TIGR01304 IMP_DH_rel_2 IMP deh 98.2 7E-06 1.5E-10 81.1 8.7 92 209-306 117-217 (369)
122 PRK00748 1-(5-phosphoribosyl)- 98.1 6.5E-06 1.4E-10 76.2 7.9 70 239-311 156-226 (233)
123 COG0274 DeoC Deoxyribose-phosp 98.1 4.9E-05 1.1E-09 69.4 12.9 90 213-306 111-213 (228)
124 PRK00208 thiG thiazole synthas 98.1 1.7E-05 3.8E-10 73.4 10.0 67 239-310 141-209 (250)
125 PRK02083 imidazole glycerol ph 98.1 1.7E-05 3.7E-10 74.6 9.5 70 239-311 163-233 (253)
126 KOG2334 tRNA-dihydrouridine sy 98.1 4.5E-05 9.7E-10 75.0 12.5 202 68-311 7-248 (477)
127 cd00959 DeoC 2-deoxyribose-5-p 98.1 9E-05 1.9E-09 67.5 13.4 87 213-304 103-202 (203)
128 TIGR03572 WbuZ glycosyl amidat 98.1 1.4E-05 3E-10 74.1 8.2 68 239-309 163-231 (232)
129 TIGR01182 eda Entner-Doudoroff 98.1 7.6E-05 1.6E-09 67.9 12.6 168 126-310 10-181 (204)
130 COG0159 TrpA Tryptophan syntha 98.0 0.00079 1.7E-08 63.3 19.2 150 133-314 28-242 (265)
131 cd00945 Aldolase_Class_I Class 98.0 0.0005 1.1E-08 61.2 17.1 168 89-305 14-201 (201)
132 PRK07114 keto-hydroxyglutarate 98.0 0.00018 3.8E-09 66.4 14.3 169 126-309 17-192 (222)
133 PF00218 IGPS: Indole-3-glycer 98.0 0.00011 2.4E-09 69.1 13.1 164 139-311 71-244 (254)
134 TIGR00735 hisF imidazoleglycer 98.0 2.5E-05 5.5E-10 73.5 8.7 70 239-311 165-235 (254)
135 COG0107 HisF Imidazoleglycerol 98.0 8.1E-05 1.8E-09 68.0 11.0 181 92-340 65-251 (256)
136 cd04731 HisF The cyclase subun 98.0 5.1E-05 1.1E-09 70.9 9.9 69 239-310 37-105 (243)
137 PRK13957 indole-3-glycerol-pho 97.9 0.00042 9.2E-09 64.8 15.8 82 225-311 151-236 (247)
138 PRK02083 imidazole glycerol ph 97.9 7.3E-05 1.6E-09 70.3 10.1 69 239-310 40-108 (253)
139 PRK13587 1-(5-phosphoribosyl)- 97.9 0.00012 2.5E-09 68.3 11.1 47 262-310 180-226 (234)
140 TIGR01163 rpe ribulose-phospha 97.9 0.00081 1.8E-08 60.9 16.4 71 239-310 123-198 (210)
141 TIGR00735 hisF imidazoleglycer 97.9 5.8E-05 1.3E-09 71.1 8.7 69 239-310 40-108 (254)
142 PRK08649 inosine 5-monophospha 97.9 6.3E-05 1.4E-09 74.5 9.2 93 210-306 117-216 (368)
143 PRK08883 ribulose-phosphate 3- 97.9 0.0015 3.2E-08 60.4 17.6 48 261-309 149-199 (220)
144 COG0134 TrpC Indole-3-glycerol 97.9 0.0006 1.3E-08 63.8 15.0 160 141-311 71-242 (254)
145 PF05690 ThiG: Thiazole biosyn 97.8 9.9E-05 2.1E-09 67.7 9.4 68 239-310 141-209 (247)
146 PRK07455 keto-hydroxyglutarate 97.8 0.00058 1.3E-08 61.4 14.3 167 126-309 14-184 (187)
147 PLN02411 12-oxophytodienoate r 97.8 0.0006 1.3E-08 68.3 15.2 96 212-310 217-347 (391)
148 PF00290 Trp_syntA: Tryptophan 97.8 0.0014 3E-08 61.9 16.8 50 264-316 188-237 (259)
149 PRK13802 bifunctional indole-3 97.7 0.00075 1.6E-08 71.9 15.6 164 139-311 73-246 (695)
150 PRK00043 thiE thiamine-phospha 97.7 0.00062 1.3E-08 61.8 12.8 74 234-309 112-192 (212)
151 PRK06015 keto-hydroxyglutarate 97.7 0.0018 3.9E-08 58.8 15.5 167 126-309 6-176 (201)
152 PRK05848 nicotinate-nucleotide 97.7 0.00037 8E-09 66.3 11.5 85 214-309 169-261 (273)
153 TIGR03128 RuMP_HxlA 3-hexulose 97.7 0.0011 2.4E-08 60.1 13.9 91 216-310 94-191 (206)
154 PRK07028 bifunctional hexulose 97.7 0.0014 3E-08 66.5 16.1 90 216-310 99-195 (430)
155 cd04726 KGPDC_HPS 3-Keto-L-gul 97.7 0.0011 2.4E-08 59.8 13.5 89 216-309 95-190 (202)
156 PRK00748 1-(5-phosphoribosyl)- 97.7 0.00034 7.3E-09 64.7 10.2 69 239-310 40-108 (233)
157 cd00958 DhnA Class I fructose- 97.7 0.00068 1.5E-08 62.9 12.2 61 239-310 153-219 (235)
158 TIGR00734 hisAF_rel hisA/hisF 97.6 0.00015 3.3E-09 66.9 7.5 49 261-311 171-219 (221)
159 PRK06806 fructose-bisphosphate 97.6 0.021 4.6E-07 54.6 22.3 105 234-341 153-278 (281)
160 cd04732 HisA HisA. Phosphorib 97.6 0.00022 4.7E-09 66.0 8.5 69 239-310 39-107 (234)
161 PRK09427 bifunctional indole-3 97.6 0.00054 1.2E-08 69.7 11.7 75 263-347 197-271 (454)
162 PTZ00170 D-ribulose-5-phosphat 97.6 0.0048 1E-07 57.2 17.2 63 263-333 161-223 (228)
163 PLN02334 ribulose-phosphate 3- 97.6 0.0026 5.6E-08 58.9 15.4 85 243-335 140-226 (229)
164 PRK13397 3-deoxy-7-phosphohept 97.6 0.0073 1.6E-07 56.6 18.0 198 60-308 3-222 (250)
165 CHL00162 thiG thiamin biosynth 97.6 0.00031 6.7E-09 65.2 8.5 69 239-311 155-224 (267)
166 PLN02460 indole-3-glycerol-pho 97.6 0.0026 5.7E-08 62.0 15.1 183 115-311 123-323 (338)
167 cd00405 PRAI Phosphoribosylant 97.5 0.0092 2E-07 54.1 17.7 92 214-310 85-186 (203)
168 PRK04128 1-(5-phosphoribosyl)- 97.5 0.00091 2E-08 62.1 11.1 36 276-311 182-217 (228)
169 cd00564 TMP_TenI Thiamine mono 97.5 0.0013 2.8E-08 58.5 11.4 69 239-310 112-183 (196)
170 PF01081 Aldolase: KDPG and KH 97.5 0.00069 1.5E-08 61.3 9.7 169 126-311 10-182 (196)
171 PRK07226 fructose-bisphosphate 97.5 0.0013 2.8E-08 62.4 11.6 61 239-310 170-236 (267)
172 PRK14024 phosphoribosyl isomer 97.4 0.00068 1.5E-08 63.4 9.0 68 239-310 42-109 (241)
173 PF01791 DeoC: DeoC/LacD famil 97.4 0.00096 2.1E-08 62.0 9.7 91 215-309 112-234 (236)
174 TIGR00875 fsa_talC_mipB fructo 97.4 0.033 7.2E-07 51.1 19.5 95 215-313 92-193 (213)
175 TIGR01859 fruc_bis_ald_ fructo 97.4 0.059 1.3E-06 51.6 21.9 103 235-341 154-279 (282)
176 COG0036 Rpe Pentose-5-phosphat 97.4 0.014 3E-07 53.4 16.5 149 132-331 12-217 (220)
177 COG0106 HisA Phosphoribosylfor 97.4 0.0026 5.6E-08 59.0 11.8 96 213-311 110-227 (241)
178 cd00429 RPE Ribulose-5-phospha 97.4 0.01 2.3E-07 53.5 15.8 69 241-310 126-199 (211)
179 PRK05283 deoxyribose-phosphate 97.3 0.0014 3.1E-08 61.6 10.0 92 213-310 117-227 (257)
180 PRK04302 triosephosphate isome 97.3 0.011 2.3E-07 54.6 15.8 92 217-311 107-208 (223)
181 PRK08745 ribulose-phosphate 3- 97.3 0.023 5.1E-07 52.5 17.5 63 262-331 154-219 (223)
182 PF00977 His_biosynth: Histidi 97.3 0.0009 1.9E-08 62.1 8.2 67 239-310 157-225 (229)
183 PLN02617 imidazole glycerol ph 97.3 0.0041 8.8E-08 64.7 13.6 68 239-311 448-518 (538)
184 COG0107 HisF Imidazoleglycerol 97.3 0.0013 2.8E-08 60.2 8.4 69 239-310 40-108 (256)
185 PRK06512 thiamine-phosphate py 97.3 0.0049 1.1E-07 56.9 12.5 91 217-310 100-197 (221)
186 cd00956 Transaldolase_FSA Tran 97.3 0.043 9.4E-07 50.3 18.6 96 215-314 92-194 (211)
187 PRK06801 hypothetical protein; 97.2 0.075 1.6E-06 51.0 20.6 100 239-341 166-283 (286)
188 PRK05742 nicotinate-nucleotide 97.2 0.0033 7.2E-08 59.9 11.1 84 216-310 179-266 (277)
189 PRK12595 bifunctional 3-deoxy- 97.2 0.043 9.3E-07 54.4 19.3 203 55-308 99-325 (360)
190 TIGR00693 thiE thiamine-phosph 97.2 0.0057 1.2E-07 54.9 12.0 77 232-310 102-185 (196)
191 cd04723 HisA_HisF Phosphoribos 97.2 0.00062 1.3E-08 63.3 5.8 49 261-311 176-224 (233)
192 PRK14114 1-(5-phosphoribosyl)- 97.2 0.0011 2.5E-08 61.9 7.2 68 239-311 154-229 (241)
193 PRK13585 1-(5-phosphoribosyl)- 97.2 0.0015 3.3E-08 60.7 8.0 68 239-309 42-109 (241)
194 TIGR03572 WbuZ glycosyl amidat 97.1 0.0019 4.1E-08 59.8 8.6 69 239-310 40-108 (232)
195 PRK04169 geranylgeranylglycery 97.1 0.002 4.3E-08 59.9 8.4 50 259-310 168-218 (232)
196 PRK07998 gatY putative fructos 97.1 0.041 8.8E-07 52.7 17.5 98 239-341 163-278 (283)
197 PRK07428 nicotinate-nucleotide 97.1 0.0056 1.2E-07 58.7 11.6 85 215-310 184-276 (288)
198 TIGR00078 nadC nicotinate-nucl 97.1 0.0057 1.2E-07 58.0 11.6 82 216-308 167-253 (265)
199 PRK13587 1-(5-phosphoribosyl)- 97.1 0.002 4.4E-08 59.9 8.2 66 241-309 44-109 (234)
200 PF04481 DUF561: Protein of un 97.1 0.01 2.2E-07 54.0 12.1 87 217-308 109-217 (242)
201 COG2022 ThiG Uncharacterized e 97.1 0.0015 3.2E-08 59.8 6.9 68 239-310 148-216 (262)
202 PRK01362 putative translaldola 97.1 0.13 2.8E-06 47.2 19.8 95 215-313 92-193 (214)
203 cd01568 QPRTase_NadC Quinolina 97.1 0.0063 1.4E-07 57.9 11.5 83 215-308 169-258 (269)
204 TIGR00007 phosphoribosylformim 97.1 0.0024 5.3E-08 58.9 8.5 69 239-310 38-106 (230)
205 TIGR01949 AroFGH_arch predicte 97.1 0.007 1.5E-07 57.1 11.7 83 217-310 128-232 (258)
206 PRK02615 thiamine-phosphate py 97.1 0.01 2.2E-07 58.4 13.0 90 218-310 231-327 (347)
207 PRK04128 1-(5-phosphoribosyl)- 97.0 0.0019 4.1E-08 59.9 7.5 49 259-309 58-106 (228)
208 TIGR02129 hisA_euk phosphoribo 97.0 0.0017 3.6E-08 61.0 6.9 62 239-310 48-109 (253)
209 cd01572 QPRTase Quinolinate ph 97.0 0.0058 1.3E-07 58.1 10.6 83 216-309 171-258 (268)
210 PRK07315 fructose-bisphosphate 97.0 0.2 4.4E-06 48.3 21.1 70 239-310 163-237 (293)
211 PRK05581 ribulose-phosphate 3- 97.0 0.016 3.4E-07 52.9 13.0 69 241-310 130-203 (220)
212 PRK09722 allulose-6-phosphate 97.0 0.078 1.7E-06 49.2 17.5 66 262-332 152-220 (229)
213 cd01573 modD_like ModD; Quinol 97.0 0.0084 1.8E-07 57.1 11.4 84 214-308 171-261 (272)
214 PRK12656 fructose-6-phosphate 97.0 0.2 4.4E-06 46.2 20.0 96 214-313 95-197 (222)
215 PRK12655 fructose-6-phosphate 97.0 0.18 3.9E-06 46.5 19.6 109 215-327 94-211 (220)
216 cd04727 pdxS PdxS is a subunit 96.9 0.057 1.2E-06 51.3 16.4 81 213-304 53-138 (283)
217 PRK01033 imidazole glycerol ph 96.9 0.006 1.3E-07 57.6 10.0 69 239-310 40-108 (258)
218 TIGR01919 hisA-trpF 1-(5-phosp 96.9 0.0036 7.7E-08 58.7 8.1 68 239-311 159-231 (243)
219 PRK13307 bifunctional formalde 96.9 0.039 8.4E-07 55.2 15.9 67 239-309 296-362 (391)
220 KOG1606 Stationary phase-induc 96.9 0.018 3.9E-07 52.1 12.0 36 275-310 206-243 (296)
221 COG0269 SgbH 3-hexulose-6-phos 96.9 0.039 8.4E-07 50.4 14.0 100 224-332 105-213 (217)
222 PRK11840 bifunctional sulfur c 96.9 0.0012 2.7E-08 63.7 4.7 76 230-310 202-283 (326)
223 PF00977 His_biosynth: Histidi 96.8 0.004 8.7E-08 57.7 7.7 69 239-310 39-107 (229)
224 PRK12653 fructose-6-phosphate 96.8 0.34 7.4E-06 44.7 20.1 95 215-313 94-195 (220)
225 PRK08005 epimerase; Validated 96.8 0.097 2.1E-06 48.0 16.3 47 261-309 149-195 (210)
226 PRK08227 autoinducer 2 aldolas 96.8 0.021 4.6E-07 54.0 12.4 79 216-308 131-229 (264)
227 PRK08072 nicotinate-nucleotide 96.8 0.016 3.5E-07 55.3 11.6 84 215-309 176-264 (277)
228 cd04723 HisA_HisF Phosphoribos 96.8 0.0044 9.6E-08 57.6 7.7 67 239-309 45-111 (233)
229 COG0800 Eda 2-keto-3-deoxy-6-p 96.8 0.024 5.3E-07 51.6 12.1 164 129-309 18-185 (211)
230 PRK05718 keto-hydroxyglutarate 96.8 0.047 1E-06 50.1 14.1 114 125-304 16-134 (212)
231 TIGR01769 GGGP geranylgeranylg 96.8 0.0076 1.7E-07 55.0 8.7 62 239-305 144-205 (205)
232 TIGR00343 pyridoxal 5'-phospha 96.7 0.043 9.4E-07 52.1 13.9 80 213-303 55-139 (287)
233 PRK08385 nicotinate-nucleotide 96.7 0.015 3.3E-07 55.4 11.0 83 215-309 171-263 (278)
234 PF01884 PcrB: PcrB family; I 96.7 0.0041 9E-08 57.5 6.7 66 240-310 151-216 (230)
235 cd02812 PcrB_like PcrB_like pr 96.6 0.0052 1.1E-07 56.6 6.6 65 239-310 145-209 (219)
236 TIGR01768 GGGP-family geranylg 96.6 0.009 1.9E-07 55.1 8.1 50 260-310 164-213 (223)
237 COG0352 ThiE Thiamine monophos 96.6 0.041 9E-07 50.4 12.4 91 218-311 95-192 (211)
238 PLN02446 (5-phosphoribosyl)-5- 96.6 0.018 3.9E-07 54.3 10.3 65 239-308 173-241 (262)
239 PF01729 QRPTase_C: Quinolinat 96.6 0.016 3.4E-07 51.4 9.3 88 215-310 68-160 (169)
240 PRK13586 1-(5-phosphoribosyl)- 96.6 0.015 3.3E-07 54.1 9.7 68 239-310 40-107 (232)
241 PF09370 TIM-br_sig_trns: TIM- 96.6 0.15 3.3E-06 48.0 16.1 191 72-308 15-249 (268)
242 PF04131 NanE: Putative N-acet 96.5 0.029 6.2E-07 50.3 10.6 85 213-305 20-119 (192)
243 PF02581 TMP-TENI: Thiamine mo 96.5 0.028 6.1E-07 50.0 10.6 74 232-308 101-180 (180)
244 TIGR01919 hisA-trpF 1-(5-phosp 96.5 0.01 2.2E-07 55.6 8.0 67 239-309 41-107 (243)
245 PRK12376 putative translaldola 96.5 0.47 1E-05 44.3 18.8 96 214-313 102-207 (236)
246 PRK14114 1-(5-phosphoribosyl)- 96.5 0.011 2.5E-07 55.2 8.0 67 239-309 40-106 (241)
247 PRK06106 nicotinate-nucleotide 96.4 0.035 7.6E-07 53.0 11.2 83 215-309 182-270 (281)
248 PRK08185 hypothetical protein; 96.4 0.79 1.7E-05 43.9 20.3 100 239-341 159-277 (283)
249 PF03437 BtpA: BtpA family; I 96.4 0.073 1.6E-06 50.1 12.9 64 239-310 169-232 (254)
250 PRK06559 nicotinate-nucleotide 96.4 0.036 7.7E-07 53.1 10.9 83 215-309 185-273 (290)
251 PRK13586 1-(5-phosphoribosyl)- 96.4 0.014 3E-07 54.3 7.9 66 239-310 156-223 (232)
252 cd00331 IGPS Indole-3-glycerol 96.3 0.07 1.5E-06 48.8 12.5 84 213-305 60-148 (217)
253 TIGR01182 eda Entner-Doudoroff 96.3 0.028 6.2E-07 51.2 9.3 77 213-304 46-127 (204)
254 cd00947 TBP_aldolase_IIB Tagat 96.3 0.67 1.5E-05 44.3 19.0 100 239-340 158-274 (276)
255 TIGR03569 NeuB_NnaB N-acetylne 96.3 0.27 5.8E-06 48.2 16.7 230 73-341 1-261 (329)
256 PRK09016 quinolinate phosphori 96.2 0.037 8E-07 53.2 10.3 83 215-309 197-284 (296)
257 PRK12738 kbaY tagatose-bisphos 96.2 0.75 1.6E-05 44.2 19.1 100 239-341 165-281 (286)
258 cd00381 IMPDH IMPDH: The catal 96.2 0.039 8.5E-07 53.9 10.5 61 239-305 103-163 (325)
259 PRK13813 orotidine 5'-phosphat 96.2 0.018 3.8E-07 52.7 7.6 48 279-332 165-213 (215)
260 PRK09195 gatY tagatose-bisphos 96.2 0.76 1.6E-05 44.1 18.8 100 239-341 165-281 (284)
261 PRK05718 keto-hydroxyglutarate 96.1 0.17 3.7E-06 46.4 13.7 87 213-310 97-187 (212)
262 PF00834 Ribul_P_3_epim: Ribul 96.1 0.097 2.1E-06 47.6 11.9 48 261-309 148-198 (201)
263 PRK06543 nicotinate-nucleotide 96.1 0.056 1.2E-06 51.6 10.7 83 215-309 181-269 (281)
264 PRK07896 nicotinate-nucleotide 96.1 0.061 1.3E-06 51.6 10.9 83 215-309 188-278 (289)
265 PRK11750 gltB glutamate syntha 96.1 0.046 1E-06 62.2 11.4 114 239-352 607-734 (1485)
266 PLN02446 (5-phosphoribosyl)-5- 96.0 0.028 6.1E-07 53.1 7.9 64 239-310 53-116 (262)
267 PRK13398 3-deoxy-7-phosphohept 95.9 0.73 1.6E-05 43.8 17.5 93 214-309 124-235 (266)
268 TIGR02134 transald_staph trans 95.9 1.4 3.1E-05 41.0 19.3 96 214-313 102-207 (236)
269 TIGR00167 cbbA ketose-bisphosp 95.9 1.6 3.5E-05 41.9 19.9 99 239-341 168-285 (288)
270 TIGR01858 tag_bisphos_ald clas 95.9 1 2.2E-05 43.2 18.4 100 239-341 163-279 (282)
271 PRK06978 nicotinate-nucleotide 95.9 0.075 1.6E-06 51.0 10.6 82 216-309 195-281 (294)
272 PRK13306 ulaD 3-keto-L-gulonat 95.9 0.059 1.3E-06 49.6 9.6 61 266-333 153-213 (216)
273 TIGR03586 PseI pseudaminic aci 95.9 1.1 2.5E-05 43.8 18.8 230 73-341 2-260 (327)
274 PF03932 CutC: CutC family; I 95.8 0.14 3E-06 46.6 11.5 123 130-305 66-199 (201)
275 cd02931 ER_like_FMN Enoate red 95.8 0.17 3.7E-06 50.6 13.2 213 63-305 5-272 (382)
276 TIGR00259 thylakoid_BtpA membr 95.7 0.046 9.9E-07 51.6 8.2 63 240-309 169-231 (257)
277 TIGR01334 modD putative molybd 95.7 0.094 2E-06 50.1 10.3 82 215-308 177-266 (277)
278 PRK12737 gatY tagatose-bisphos 95.7 1.6 3.4E-05 41.9 18.7 98 239-341 165-281 (284)
279 PLN02617 imidazole glycerol ph 95.7 0.043 9.3E-07 57.2 8.5 70 239-310 277-359 (538)
280 PF00478 IMPDH: IMP dehydrogen 95.6 0.064 1.4E-06 52.8 9.1 61 239-305 117-177 (352)
281 PRK06852 aldolase; Validated 95.6 0.19 4.1E-06 48.6 12.1 66 239-309 198-269 (304)
282 PRK08091 ribulose-phosphate 3- 95.5 0.44 9.5E-06 44.2 13.8 48 260-308 160-210 (228)
283 PRK06843 inosine 5-monophospha 95.5 0.081 1.8E-06 53.1 9.6 61 239-305 162-222 (404)
284 PLN02898 HMP-P kinase/thiamin- 95.5 0.18 3.9E-06 52.2 12.5 91 217-310 380-480 (502)
285 PLN02417 dihydrodipicolinate s 95.5 0.077 1.7E-06 50.7 9.1 103 210-329 17-124 (280)
286 PRK06096 molybdenum transport 95.5 0.15 3.2E-06 48.9 10.7 82 215-307 178-266 (284)
287 COG2876 AroA 3-deoxy-D-arabino 95.4 1.3 2.7E-05 41.9 16.2 88 215-305 143-249 (286)
288 COG3010 NanE Putative N-acetyl 95.3 0.53 1.1E-05 42.8 13.1 84 213-303 54-152 (229)
289 PRK09517 multifunctional thiam 95.3 0.089 1.9E-06 57.2 10.0 68 242-310 128-199 (755)
290 cd00452 KDPG_aldolase KDPG and 95.3 0.14 3E-06 46.0 9.6 76 214-304 43-123 (190)
291 cd03319 L-Ala-DL-Glu_epimerase 95.3 0.44 9.6E-06 46.1 13.8 123 125-307 126-260 (316)
292 PRK14057 epimerase; Provisiona 95.3 0.69 1.5E-05 43.6 14.3 48 260-308 174-224 (254)
293 PRK11572 copper homeostasis pr 95.3 0.48 1E-05 44.4 13.2 122 130-305 67-198 (248)
294 COG0214 SNZ1 Pyridoxine biosyn 95.2 0.023 5E-07 52.2 4.2 47 262-310 194-242 (296)
295 TIGR02313 HpaI-NOT-DapA 2,4-di 95.2 0.11 2.4E-06 50.0 9.2 89 239-330 31-124 (294)
296 PRK08673 3-deoxy-7-phosphohept 95.2 0.68 1.5E-05 45.4 14.7 123 214-339 190-333 (335)
297 PRK12290 thiE thiamine-phospha 95.2 0.3 6.5E-06 49.4 12.3 92 218-310 291-397 (437)
298 PRK03620 5-dehydro-4-deoxygluc 95.2 0.1 2.3E-06 50.4 8.9 88 239-330 38-130 (303)
299 TIGR02129 hisA_euk phosphoribo 95.1 0.041 8.8E-07 51.7 5.7 47 261-309 188-236 (253)
300 PRK01130 N-acetylmannosamine-6 95.1 0.87 1.9E-05 41.7 14.5 87 214-305 45-146 (221)
301 PLN02591 tryptophan synthase 95.1 0.11 2.5E-06 48.8 8.7 36 215-250 179-219 (250)
302 PRK06552 keto-hydroxyglutarate 95.1 0.14 3E-06 47.0 9.1 77 213-304 51-135 (213)
303 PRK08999 hypothetical protein; 95.1 0.12 2.7E-06 49.8 9.2 73 233-308 233-311 (312)
304 TIGR01305 GMP_reduct_1 guanosi 95.1 0.17 3.6E-06 49.4 9.9 91 209-305 75-178 (343)
305 PRK03512 thiamine-phosphate py 95.0 0.41 8.9E-06 43.8 11.9 76 233-310 109-191 (211)
306 cd00951 KDGDH 5-dehydro-4-deox 95.0 0.12 2.7E-06 49.5 8.9 87 239-329 31-122 (289)
307 PTZ00314 inosine-5'-monophosph 95.0 0.14 3E-06 53.0 9.8 245 42-305 19-310 (495)
308 PLN02274 inosine-5'-monophosph 95.0 0.076 1.7E-06 55.0 7.8 246 41-305 22-317 (505)
309 PLN02716 nicotinate-nucleotide 95.0 0.29 6.4E-06 47.3 11.2 91 215-309 188-294 (308)
310 TIGR01306 GMP_reduct_2 guanosi 94.9 0.23 4.9E-06 48.5 10.5 61 239-305 103-165 (321)
311 cd00952 CHBPH_aldolase Trans-o 94.9 0.13 2.9E-06 49.8 8.9 103 210-329 24-131 (309)
312 PRK09250 fructose-bisphosphate 94.9 0.13 2.9E-06 50.3 8.7 71 239-309 227-322 (348)
313 cd00408 DHDPS-like Dihydrodipi 94.9 0.16 3.5E-06 48.2 9.3 88 239-329 28-120 (281)
314 cd04728 ThiG Thiazole synthase 94.8 0.16 3.5E-06 47.4 8.6 104 123-250 90-205 (248)
315 cd04729 NanE N-acetylmannosami 94.8 1.2 2.5E-05 40.8 14.5 86 215-305 50-150 (219)
316 COG0106 HisA Phosphoribosylfor 94.8 0.16 3.5E-06 47.2 8.5 66 239-308 41-107 (241)
317 COG0329 DapA Dihydrodipicolina 94.8 0.17 3.6E-06 48.9 9.0 103 210-329 20-127 (299)
318 PRK13396 3-deoxy-7-phosphohept 94.7 0.68 1.5E-05 45.7 13.1 124 214-340 198-343 (352)
319 cd02803 OYE_like_FMN_family Ol 94.7 0.17 3.6E-06 49.2 8.9 210 63-308 4-251 (327)
320 COG1830 FbaB DhnA-type fructos 94.7 0.71 1.5E-05 43.6 12.5 60 239-309 176-241 (265)
321 TIGR01302 IMP_dehydrog inosine 94.6 0.098 2.1E-06 53.4 7.5 61 239-305 233-293 (450)
322 CHL00200 trpA tryptophan synth 94.6 0.52 1.1E-05 44.7 11.8 37 214-250 191-232 (263)
323 PRK07565 dihydroorotate dehydr 94.6 0.4 8.6E-06 47.0 11.4 90 215-306 91-198 (334)
324 PRK07709 fructose-bisphosphate 94.6 0.7 1.5E-05 44.4 12.6 98 239-341 166-282 (285)
325 PRK12857 fructose-1,6-bisphosp 94.6 4.6 0.0001 38.7 19.7 98 239-341 165-281 (284)
326 PRK06015 keto-hydroxyglutarate 94.5 0.24 5.2E-06 45.1 9.0 77 213-304 42-123 (201)
327 PRK00208 thiG thiazole synthas 94.5 0.2 4.3E-06 46.8 8.5 104 123-250 90-205 (250)
328 TIGR02320 PEP_mutase phosphoen 94.5 2.8 6.1E-05 40.2 16.6 182 90-311 18-246 (285)
329 PRK05096 guanosine 5'-monophos 94.5 0.27 5.9E-06 48.0 9.7 59 241-305 121-179 (346)
330 TIGR00683 nanA N-acetylneurami 94.4 0.24 5.2E-06 47.6 9.1 88 239-329 31-124 (290)
331 COG2089 SpsE Sialic acid synth 94.3 1.6 3.4E-05 42.4 14.2 239 64-340 3-272 (347)
332 TIGR03249 KdgD 5-dehydro-4-deo 94.3 0.23 5E-06 47.8 8.8 88 239-330 36-128 (296)
333 TIGR00674 dapA dihydrodipicoli 94.1 0.29 6.4E-06 46.7 9.2 88 239-329 29-121 (285)
334 COG0157 NadC Nicotinate-nucleo 94.1 0.53 1.2E-05 44.7 10.5 85 213-308 173-265 (280)
335 PRK04147 N-acetylneuraminate l 94.1 0.27 5.9E-06 47.2 8.9 87 239-328 34-126 (293)
336 cd03316 MR_like Mandelate race 94.0 0.69 1.5E-05 45.4 11.9 119 134-305 139-270 (357)
337 PRK03170 dihydrodipicolinate s 94.0 5.9 0.00013 37.8 18.2 84 72-156 6-103 (292)
338 PF01081 Aldolase: KDPG and KH 94.0 0.27 5.8E-06 44.6 8.0 77 213-304 46-127 (196)
339 KOG4201 Anthranilate synthase 94.0 0.23 5E-06 45.3 7.4 70 239-311 203-272 (289)
340 cd00954 NAL N-Acetylneuraminic 94.0 0.29 6.4E-06 46.8 8.8 88 239-329 31-124 (288)
341 PRK07807 inosine 5-monophospha 93.9 0.18 3.9E-06 51.9 7.7 244 42-305 14-296 (479)
342 cd04735 OYE_like_4_FMN Old yel 93.9 3.1 6.7E-05 41.1 16.2 210 63-307 5-257 (353)
343 PRK07107 inosine 5-monophospha 93.9 0.18 3.9E-06 52.2 7.7 246 41-305 10-312 (502)
344 cd04733 OYE_like_2_FMN Old yel 93.9 1.6 3.5E-05 42.8 14.1 211 63-305 5-256 (338)
345 PF00724 Oxidored_FMN: NADH:fl 93.9 0.49 1.1E-05 46.5 10.3 87 63-154 6-98 (341)
346 COG3142 CutC Uncharacterized p 93.8 1.3 2.8E-05 40.9 12.1 121 130-303 67-198 (241)
347 TIGR00734 hisAF_rel hisA/hisF 93.8 0.2 4.4E-06 46.2 7.2 65 239-309 46-112 (221)
348 cd02929 TMADH_HD_FMN Trimethyl 93.8 2.5 5.3E-05 42.1 15.4 214 62-305 11-258 (370)
349 PRK13957 indole-3-glycerol-pho 93.7 0.26 5.7E-06 46.2 7.6 64 239-308 71-134 (247)
350 PF00701 DHDPS: Dihydrodipicol 93.6 0.26 5.6E-06 47.1 7.7 87 239-328 32-123 (289)
351 TIGR02319 CPEP_Pphonmut carbox 93.6 5.8 0.00013 38.3 16.8 62 239-311 175-239 (294)
352 cd00950 DHDPS Dihydrodipicolin 93.5 0.43 9.3E-06 45.4 9.1 88 239-329 31-123 (284)
353 PRK12858 tagatose 1,6-diphosph 93.5 0.71 1.5E-05 45.4 10.7 68 240-310 197-281 (340)
354 PRK05835 fructose-bisphosphate 93.5 1.7 3.7E-05 42.1 13.1 101 239-341 165-304 (307)
355 PF01207 Dus: Dihydrouridine s 93.5 0.36 7.8E-06 46.8 8.6 86 120-249 120-213 (309)
356 PRK09140 2-dehydro-3-deoxy-6-p 93.5 0.7 1.5E-05 42.2 10.0 76 214-304 49-130 (206)
357 TIGR01303 IMP_DH_rel_1 IMP deh 93.4 0.28 6E-06 50.5 7.9 242 41-305 12-294 (475)
358 cd03315 MLE_like Muconate lact 93.3 1.8 4E-05 40.7 13.0 42 262-305 168-210 (265)
359 COG1646 Predicted phosphate-bi 93.3 0.14 3E-06 47.3 5.0 46 260-309 179-224 (240)
360 TIGR00736 nifR3_rel_arch TIM-b 93.2 0.63 1.4E-05 43.3 9.3 38 212-249 177-220 (231)
361 KOG2335 tRNA-dihydrouridine sy 93.2 1.1 2.3E-05 44.0 11.2 86 122-249 141-233 (358)
362 cd00377 ICL_PEPM Members of th 93.1 0.65 1.4E-05 43.5 9.3 92 216-307 60-182 (243)
363 PRK03170 dihydrodipicolinate s 92.9 0.55 1.2E-05 44.9 8.9 88 239-329 32-124 (292)
364 PF04898 Glu_syn_central: Glut 92.9 0.76 1.6E-05 44.1 9.5 114 239-352 152-280 (287)
365 PRK10550 tRNA-dihydrouridine s 92.8 1.2 2.6E-05 43.3 11.1 83 123-248 134-223 (312)
366 KOG3111 D-ribulose-5-phosphate 92.8 3.3 7.3E-05 37.3 12.7 109 216-334 104-220 (224)
367 PRK08610 fructose-bisphosphate 92.8 2.3 4.9E-05 40.9 12.6 98 239-341 166-282 (286)
368 cd00408 DHDPS-like Dihydrodipi 92.6 9.3 0.0002 36.1 20.9 177 72-308 2-204 (281)
369 PRK13111 trpA tryptophan synth 92.6 2 4.3E-05 40.7 11.8 37 214-250 189-229 (258)
370 cd04726 KGPDC_HPS 3-Keto-L-gul 92.5 3.8 8.3E-05 36.6 13.3 83 214-305 41-133 (202)
371 PRK07114 keto-hydroxyglutarate 92.5 0.7 1.5E-05 42.7 8.5 77 213-304 53-138 (222)
372 COG0159 TrpA Tryptophan syntha 92.5 0.43 9.3E-06 45.1 7.2 163 66-249 50-233 (265)
373 PRK00230 orotidine 5'-phosphat 92.5 0.26 5.7E-06 45.7 5.7 73 239-332 145-228 (230)
374 PRK05458 guanosine 5'-monophos 92.3 1.2 2.6E-05 43.6 10.3 61 239-305 106-168 (326)
375 cd00950 DHDPS Dihydrodipicolin 92.3 10 0.00023 35.9 17.9 84 72-156 5-102 (284)
376 PRK05567 inosine 5'-monophosph 92.2 0.47 1E-05 49.0 7.7 248 42-305 10-297 (486)
377 PRK08255 salicylyl-CoA 5-hydro 92.2 4.6 9.9E-05 44.2 15.7 216 62-305 402-658 (765)
378 PF05690 ThiG: Thiazole biosyn 92.0 0.56 1.2E-05 43.5 7.1 38 212-249 162-204 (247)
379 TIGR00262 trpA tryptophan synt 92.0 2.9 6.4E-05 39.4 12.3 38 213-250 186-228 (256)
380 COG2022 ThiG Uncharacterized e 92.0 0.99 2.1E-05 41.8 8.5 38 212-249 169-211 (262)
381 COG4981 Enoyl reductase domain 91.9 4.9 0.00011 41.6 14.2 214 49-311 11-259 (717)
382 cd04739 DHOD_like Dihydroorota 91.9 2.7 5.9E-05 41.0 12.3 183 71-296 99-304 (325)
383 PRK09427 bifunctional indole-3 91.7 1.6 3.5E-05 44.7 10.7 82 214-305 197-284 (454)
384 TIGR01361 DAHP_synth_Bsub phos 91.6 2.1 4.5E-05 40.5 10.8 94 213-309 121-233 (260)
385 COG0135 TrpF Phosphoribosylant 91.6 1.3 2.9E-05 40.5 9.1 95 208-307 81-185 (208)
386 cd00945 Aldolase_Class_I Class 91.5 1.6 3.4E-05 38.5 9.4 77 239-329 23-108 (201)
387 COG0042 tRNA-dihydrouridine sy 91.4 1.3 2.8E-05 43.3 9.4 39 211-249 183-228 (323)
388 PLN02411 12-oxophytodienoate r 91.3 6.9 0.00015 39.3 14.8 85 62-153 15-104 (391)
389 PF04309 G3P_antiterm: Glycero 91.3 0.14 3.1E-06 45.5 2.4 141 124-310 21-174 (175)
390 COG0434 SgcQ Predicted TIM-bar 91.3 0.47 1E-05 44.0 5.8 63 239-309 174-236 (263)
391 PF00290 Trp_syntA: Tryptophan 91.2 0.92 2E-05 42.9 7.9 36 215-250 188-227 (259)
392 PF01116 F_bP_aldolase: Fructo 90.9 5 0.00011 38.6 12.8 101 239-341 165-284 (287)
393 PRK12457 2-dehydro-3-deoxyphos 90.8 1.9 4.1E-05 41.0 9.6 91 214-306 120-238 (281)
394 PRK05286 dihydroorotate dehydr 90.7 1.1 2.4E-05 44.1 8.3 100 123-249 212-318 (344)
395 cd02809 alpha_hydroxyacid_oxid 90.4 3 6.5E-05 40.1 10.9 84 217-305 107-200 (299)
396 PRK11840 bifunctional sulfur c 90.1 1.7 3.6E-05 42.4 8.7 102 123-248 164-277 (326)
397 cd00516 PRTase_typeII Phosphor 90.0 2.9 6.2E-05 39.7 10.3 91 215-310 170-272 (281)
398 PLN02858 fructose-bisphosphate 89.9 41 0.00088 39.5 21.1 103 239-341 1260-1375(1378)
399 TIGR02317 prpB methylisocitrat 89.7 14 0.0003 35.5 14.6 61 239-311 171-235 (285)
400 PRK11320 prpB 2-methylisocitra 89.7 14 0.0003 35.7 14.6 61 239-311 176-240 (292)
401 CHL00162 thiG thiamin biosynth 89.7 0.96 2.1E-05 42.4 6.4 37 212-248 176-217 (267)
402 TIGR03249 KdgD 5-dehydro-4-deo 89.6 20 0.00043 34.4 19.5 82 72-155 10-105 (296)
403 cd00439 Transaldolase Transald 89.4 19 0.00041 33.9 16.8 94 215-312 130-241 (252)
404 cd01571 NAPRTase_B Nicotinate 89.3 2.4 5.2E-05 41.0 9.2 90 215-310 172-278 (302)
405 PRK10415 tRNA-dihydrouridine s 89.2 3.6 7.8E-05 40.1 10.5 38 212-249 181-224 (321)
406 cd00377 ICL_PEPM Members of th 89.2 19 0.00041 33.6 16.5 175 90-311 18-232 (243)
407 PRK08318 dihydropyrimidine deh 89.2 1.1 2.4E-05 45.3 7.1 107 123-250 169-283 (420)
408 cd02810 DHOD_DHPD_FMN Dihydroo 89.2 1.6 3.4E-05 41.6 7.8 151 71-249 98-272 (289)
409 cd04740 DHOD_1B_like Dihydroor 89.1 4.1 9E-05 38.9 10.7 87 216-304 80-185 (296)
410 TIGR00674 dapA dihydrodipicoli 88.6 23 0.00049 33.7 20.6 84 72-156 3-100 (285)
411 TIGR01521 FruBisAldo_II_B fruc 88.5 7.8 0.00017 38.2 12.2 103 239-342 181-325 (347)
412 cd00951 KDGDH 5-dehydro-4-deox 88.5 24 0.00051 33.7 20.6 82 72-155 5-100 (289)
413 PRK09196 fructose-1,6-bisphosp 88.4 7.4 0.00016 38.4 11.9 103 239-342 183-327 (347)
414 cd00429 RPE Ribulose-5-phospha 88.2 18 0.0004 32.2 15.1 86 212-306 44-135 (211)
415 cd02940 DHPD_FMN Dihydropyrimi 88.0 2.7 5.9E-05 40.4 8.7 107 123-250 169-282 (299)
416 COG0352 ThiE Thiamine monophos 87.9 15 0.00033 33.7 12.9 40 210-249 143-186 (211)
417 cd04738 DHOD_2_like Dihydrooro 87.8 1.4 3.1E-05 42.9 6.7 100 123-249 203-309 (327)
418 TIGR00737 nifR3_yhdG putative 87.7 4.7 0.0001 39.1 10.2 37 212-248 179-221 (319)
419 PRK03620 5-dehydro-4-deoxygluc 87.5 28 0.0006 33.5 18.9 82 72-155 12-107 (303)
420 PRK00311 panB 3-methyl-2-oxobu 87.4 7.6 0.00016 36.9 11.0 135 75-283 17-203 (264)
421 cd06557 KPHMT-like Ketopantoat 87.4 6 0.00013 37.3 10.3 135 75-283 14-200 (254)
422 PRK07259 dihydroorotate dehydr 87.2 5.5 0.00012 38.2 10.3 86 217-304 83-188 (301)
423 PRK13399 fructose-1,6-bisphosp 87.2 9.8 0.00021 37.6 12.0 103 239-342 183-327 (347)
424 TIGR03569 NeuB_NnaB N-acetylne 87.2 12 0.00027 36.6 12.7 135 132-296 12-153 (329)
425 TIGR01362 KDO8P_synth 3-deoxy- 86.6 5.2 0.00011 37.7 9.2 88 214-306 106-222 (258)
426 TIGR02313 HpaI-NOT-DapA 2,4-di 86.3 32 0.0007 33.0 21.9 84 72-156 5-102 (294)
427 TIGR00742 yjbN tRNA dihydrouri 86.2 6.9 0.00015 38.1 10.4 38 212-249 181-223 (318)
428 COG0329 DapA Dihydrodipicolina 85.8 35 0.00076 32.9 21.6 179 72-307 9-211 (299)
429 cd04722 TIM_phosphate_binding 85.7 14 0.00031 31.7 11.4 90 215-308 47-146 (200)
430 PLN02979 glycolate oxidase 85.7 1.4 3.1E-05 43.6 5.3 44 260-306 209-252 (366)
431 PRK05198 2-dehydro-3-deoxyphos 85.6 6.1 0.00013 37.3 9.2 88 214-306 114-230 (264)
432 PTZ00411 transaldolase-like pr 85.6 7.5 0.00016 38.2 10.2 99 212-314 145-264 (333)
433 PRK12309 transaldolase/EF-hand 85.6 43 0.00092 33.7 16.0 96 212-312 139-256 (391)
434 PF00701 DHDPS: Dihydrodipicol 85.6 34 0.00073 32.5 19.5 177 73-309 7-209 (289)
435 TIGR01037 pyrD_sub1_fam dihydr 85.5 3.6 7.8E-05 39.4 8.0 37 213-249 222-263 (300)
436 COG0269 SgbH 3-hexulose-6-phos 85.2 17 0.00037 33.4 11.6 87 214-308 44-140 (217)
437 KOG2550 IMP dehydrogenase/GMP 85.2 2.6 5.7E-05 42.1 6.8 61 239-305 260-320 (503)
438 cd03332 LMO_FMN L-Lactate 2-mo 85.1 1.6 3.5E-05 43.6 5.5 42 261-305 240-281 (383)
439 PRK11197 lldD L-lactate dehydr 85.1 1.6 3.4E-05 43.7 5.3 43 261-306 232-274 (381)
440 cd02801 DUS_like_FMN Dihydrour 85.1 8.4 0.00018 35.1 10.0 38 212-249 170-213 (231)
441 cd00957 Transaldolase_TalAB Tr 85.0 7.1 0.00015 38.0 9.7 97 212-313 133-251 (313)
442 PRK09250 fructose-bisphosphate 85.0 4.9 0.00011 39.6 8.6 71 234-306 150-238 (348)
443 PRK06512 thiamine-phosphate py 84.8 6.1 0.00013 36.4 8.8 79 215-307 61-140 (221)
444 PRK11320 prpB 2-methylisocitra 84.8 4.3 9.3E-05 39.1 8.0 78 225-304 16-112 (292)
445 COG1954 GlpP Glycerol-3-phosph 84.7 1.8 3.9E-05 38.2 4.9 141 124-310 25-178 (181)
446 PRK00278 trpC indole-3-glycero 84.7 3.7 8E-05 38.8 7.5 64 239-308 80-143 (260)
447 cd08205 RuBisCO_IV_RLP Ribulos 84.6 8.8 0.00019 38.2 10.4 101 209-310 113-235 (367)
448 COG0502 BioB Biotin synthase a 84.3 17 0.00036 35.7 11.9 174 90-306 89-295 (335)
449 PF00218 IGPS: Indole-3-glycer 84.3 4.5 9.7E-05 38.2 7.8 65 239-309 78-142 (254)
450 PLN02493 probable peroxisomal 83.9 1.9 4.1E-05 42.9 5.3 43 261-306 211-253 (367)
451 PF13714 PEP_mutase: Phosphoen 83.7 8.6 0.00019 35.9 9.4 79 225-305 8-105 (238)
452 cd06556 ICL_KPHMT Members of t 83.7 4.7 0.0001 37.7 7.6 80 225-305 11-109 (240)
453 TIGR02317 prpB methylisocitrat 83.7 4.9 0.00011 38.6 7.9 79 225-305 12-108 (285)
454 PLN02334 ribulose-phosphate 3- 83.5 36 0.00079 31.2 14.9 87 213-306 53-147 (229)
455 PRK05437 isopentenyl pyrophosp 83.5 10 0.00022 37.5 10.4 91 214-306 108-218 (352)
456 cd02811 IDI-2_FMN Isopentenyl- 83.3 12 0.00025 36.6 10.6 92 213-306 99-210 (326)
457 COG0167 PyrD Dihydroorotate de 83.2 6.5 0.00014 38.2 8.6 135 122-292 161-304 (310)
458 cd00564 TMP_TenI Thiamine mono 83.2 30 0.00065 30.1 12.6 40 211-250 136-179 (196)
459 PRK07084 fructose-bisphosphate 83.1 26 0.00057 34.2 12.7 72 239-311 174-274 (321)
460 PLN02535 glycolate oxidase 83.0 2 4.3E-05 42.7 5.1 42 261-305 210-251 (364)
461 PRK15452 putative protease; Pr 83.0 22 0.00049 36.3 12.8 57 239-308 86-144 (443)
462 cd04736 MDH_FMN Mandelate dehy 82.9 2.4 5.2E-05 42.1 5.6 41 262-305 224-264 (361)
463 PRK00043 thiE thiamine-phospha 82.7 34 0.00074 30.5 12.8 39 212-250 146-189 (212)
464 cd00953 KDG_aldolase KDG (2-ke 82.6 7.4 0.00016 37.0 8.7 86 239-329 30-120 (279)
465 TIGR00640 acid_CoA_mut_C methy 82.5 13 0.00028 31.4 9.2 80 216-303 21-110 (132)
466 COG1411 Uncharacterized protei 82.2 2.3 5E-05 38.5 4.6 49 261-311 168-216 (229)
467 COG1830 FbaB DhnA-type fructos 82.2 14 0.00031 34.9 10.1 71 233-305 100-186 (265)
468 COG0516 GuaB IMP dehydrogenase 82.1 0.66 1.4E-05 40.9 1.2 59 42-106 16-76 (170)
469 PRK07455 keto-hydroxyglutarate 81.7 14 0.00031 32.9 9.8 82 213-305 2-91 (187)
470 KOG0623 Glutamine amidotransfe 81.4 3.4 7.3E-05 40.4 5.7 71 239-311 279-362 (541)
471 PRK01222 N-(5'-phosphoribosyl) 81.2 17 0.00036 33.2 10.1 90 209-307 84-185 (210)
472 COG2070 Dioxygenases related t 81.2 19 0.00041 35.4 11.2 114 90-250 93-214 (336)
473 PF00563 EAL: EAL domain; Int 81.2 4.8 0.0001 36.2 6.7 84 215-303 138-229 (236)
474 COG0176 MipB Transaldolase [Ca 81.0 48 0.0011 31.0 17.6 96 216-315 107-210 (239)
475 PRK05581 ribulose-phosphate 3- 81.0 42 0.00091 30.2 14.3 121 133-306 13-139 (220)
476 TIGR02320 PEP_mutase phosphoen 80.8 13 0.00028 35.7 9.6 90 216-305 69-189 (285)
477 PRK05269 transaldolase B; Prov 80.7 59 0.0013 31.8 15.8 97 212-313 135-253 (318)
478 COG5564 Predicted TIM-barrel e 80.7 19 0.00041 33.3 9.9 74 232-305 162-252 (276)
479 TIGR01769 GGGP geranylgeranylg 80.7 15 0.00033 33.5 9.6 36 213-248 164-204 (205)
480 KOG4175 Tryptophan synthase al 80.3 47 0.001 30.4 13.2 46 264-311 196-241 (268)
481 PRK12346 transaldolase A; Prov 80.1 17 0.00036 35.5 10.2 97 212-313 134-252 (316)
482 cd04824 eu_ALAD_PBGS_cysteine_ 80.1 20 0.00043 34.8 10.5 20 214-233 251-271 (320)
483 cd02911 arch_FMN Archeal FMN-b 79.8 18 0.00038 33.6 10.0 36 212-249 180-220 (233)
484 KOG0134 NADH:flavin oxidoreduc 79.8 14 0.00031 37.0 9.7 100 211-311 225-354 (400)
485 smart00052 EAL Putative diguan 79.8 9.3 0.0002 34.4 8.1 85 215-303 137-229 (241)
486 TIGR02319 CPEP_Pphonmut carbox 79.6 7.1 0.00015 37.7 7.4 79 225-305 15-112 (294)
487 cd04741 DHOD_1A_like Dihydroor 79.4 9.3 0.0002 36.7 8.2 107 122-250 157-273 (294)
488 TIGR03586 PseI pseudaminic aci 79.1 42 0.00091 32.9 12.7 143 132-304 13-166 (327)
489 COG2185 Sbm Methylmalonyl-CoA 79.1 19 0.00041 30.9 9.0 82 214-303 29-120 (143)
490 COG0284 PyrF Orotidine-5'-phos 79.1 56 0.0012 30.5 13.4 58 240-311 154-220 (240)
491 PLN03033 2-dehydro-3-deoxyphos 78.9 14 0.00031 35.3 9.0 87 215-306 121-241 (290)
492 TIGR03128 RuMP_HxlA 3-hexulose 78.7 22 0.00047 31.8 10.0 85 213-306 39-134 (206)
493 COG2513 PrpB PEP phosphonomuta 78.6 65 0.0014 31.0 16.7 214 90-351 27-288 (289)
494 cd00959 DeoC 2-deoxyribose-5-p 78.2 48 0.001 29.8 12.1 69 239-308 79-154 (203)
495 COG0800 Eda 2-keto-3-deoxy-6-p 78.1 20 0.00044 32.8 9.5 56 239-303 35-90 (211)
496 cd03329 MR_like_4 Mandelate ra 77.9 35 0.00076 33.7 12.1 42 262-305 228-271 (368)
497 TIGR00693 thiE thiamine-phosph 77.6 9.1 0.0002 34.0 7.2 78 216-308 48-126 (196)
498 PRK13125 trpA tryptophan synth 77.6 61 0.0013 30.1 14.1 84 133-249 15-108 (244)
499 cd08209 RLP_DK-MTP-1-P-enolase 77.5 77 0.0017 31.9 14.3 67 92-160 144-228 (391)
500 cd04823 ALAD_PBGS_aspartate_ri 77.5 27 0.00058 33.9 10.5 20 214-233 251-270 (320)
No 1
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=100.00 E-value=3.5e-91 Score=642.79 Aligned_cols=353 Identities=76% Similarity=1.168 Sum_probs=337.1
Q ss_pred CCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEeccccccc
Q 017781 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (366)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~ 83 (366)
++|++|||+.|+++||+.+|||+.|||+|+.|+++|+++|.+|.|+||+|+|++.+|+||+++|.++++||+|||++++.
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 84 l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
++|||||..+|++|.+.|++|++|+++++++|||.+++| +..|||||+++|++++.++++|||++|++++++|+|+|..
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999999999999999999886 8899999999999999999999999999999999999999
Q ss_pred cchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----
Q 017781 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238 (366)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d---- 238 (366)
|+|+.|++|+|.+|+.++++|+.+.......+...++...+++.+.|++++|++|+|+|+.|++||++||+++.||
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A 240 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA 240 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence 9999999999999998988888776544444445567778999999999999999999999999999999999998
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~ 318 (366)
.++|+++|+||||||||+|..|+++++|+|+.+++.+++||+.|||||+|.||+|||||||.+|.+|||++|++++.|+.
T Consensus 241 ve~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~ 320 (363)
T KOG0538|consen 241 VEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEA 320 (363)
T ss_pred HHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccC
Q 017781 319 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356 (366)
Q Consensus 319 gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~~ 356 (366)
||+++++.|++|++.+|++.||+|++|+++..+....+
T Consensus 321 GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~~v~~~~s 358 (363)
T KOG0538|consen 321 GVKKVLDILRDEFELTMALSGCRSVKEITRNHVLTEES 358 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCchhhhCccceeechh
Confidence 99999999999999999999999999999886554433
No 2
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=7.5e-84 Score=626.48 Aligned_cols=358 Identities=91% Similarity=1.354 Sum_probs=326.6
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccc
Q 017781 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (366)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~ 82 (366)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|+|++++||+|++||+++++||++||+|++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 83 ~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
++.||++|.++|++|+++|++|++|+.+++++|||++..+++.|||||+++|++.++++++||+++||++|++|+|+|+.
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999999999
Q ss_pred cchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----
Q 017781 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238 (366)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d---- 238 (366)
|+|++|++|+|.+|..+..+++..............+...+...+.++.++|++|+|||+.|++||++|++.+.+|
T Consensus 162 G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a 241 (367)
T PLN02493 162 GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241 (367)
T ss_pred CcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHH
Confidence 9999999999998876665554321110111111222334555567889999999999999999999999999998
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~ 318 (366)
.++|+|+|+||||||||+|+.++++++|+++++++.+++|||+|||||+|.|++|||+|||++|+|||||+|+++..|++
T Consensus 242 ~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~ 321 (367)
T PLN02493 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEA 321 (367)
T ss_pred HHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999988778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccCCCCC
Q 017781 319 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLP 360 (366)
Q Consensus 319 gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~~~~~~ 360 (366)
||+++++.+++||+.+|.++|++++.|+++..+......++|
T Consensus 322 gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~~~~~~~~~ 363 (367)
T PLN02493 322 GVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRP 363 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhccCc
Confidence 999999999999999999999999999999888665544433
No 3
>PLN02535 glycolate oxidase
Probab=100.00 E-value=9.7e-81 Score=605.48 Aligned_cols=354 Identities=65% Similarity=1.029 Sum_probs=322.8
Q ss_pred CCCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEeccccc
Q 017781 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (366)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~ 81 (366)
++++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|+|++++||+|++||+++++||+|||+|+
T Consensus 3 ~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~ 82 (364)
T PLN02535 3 DEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAM 82 (364)
T ss_pred cccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Q 017781 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (366)
Q Consensus 82 ~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~ 161 (366)
+++.||++|.++|++|+++|+++++|+++++++|||++..+++.|||||+++|++.+.++++||+++||++|++|+|+|+
T Consensus 83 ~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~ 162 (364)
T PLN02535 83 HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPR 162 (364)
T ss_pred hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCC
Confidence 99999999999999999999999999999999999998766789999999999999999999999999999999999999
Q ss_pred CcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH---
Q 017781 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--- 238 (366)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--- 238 (366)
.|+|++|++|+|.+|. .+++..............+...+.....++.++|++|+|+|+.|++||++|++.+++|
T Consensus 163 ~g~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~ 239 (364)
T PLN02535 163 LGRREADIKNKMISPQ---LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIK 239 (364)
T ss_pred CCCchhhhhcCCCCcc---hhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHH
Confidence 9999999999998883 2332211100001111122344555566889999999999999999999999999998
Q ss_pred -HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCH
Q 017781 239 -VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 317 (366)
Q Consensus 239 -~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~ 317 (366)
.++|+|+|+|+||||+++++++++++.|+++++++.+++|||++|||+++.|++|||++||++|++||||+|+++..|+
T Consensus 240 a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~ 319 (364)
T PLN02535 240 AVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGE 319 (364)
T ss_pred HHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccH
Confidence 9999999999999999999999999999999998866899999999999999999999999999999999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccCCC
Q 017781 318 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 358 (366)
Q Consensus 318 ~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~~~~ 358 (366)
+|++++++.+++||+.+|.++|+.+++||++..++...|+-
T Consensus 320 ~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~l~~~~~~~ 360 (364)
T PLN02535 320 DGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTERERL 360 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhhccchHhhh
Confidence 99999999999999999999999999999998887665543
No 4
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-80 Score=607.32 Aligned_cols=350 Identities=38% Similarity=0.656 Sum_probs=317.7
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccc
Q 017781 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (366)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~ 82 (366)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|+|++++||+|++||+++++||++||++++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 83 ~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
++.||++|.++|++|++.|++|++|+.+++++|||++..+++.|||||+++|++.++++++||+++||++|++|||+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999999999
Q ss_pred cchhHHHhhhcCCCCccccccccccc-----------------cCCCcc-----ccchhhHHHhhhccCCCCCHHHHHHH
Q 017781 163 GRREADIKNRFTLPPFLTLKNFQGLD-----------------LGKMDE-----ANDSGLAAYVAGQIDRSLSWKDVKWL 220 (366)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~-----------------~~~~~~-----~~~~~~~~~~~~~~d~~~~~~~i~~l 220 (366)
|+|++|++++|.+|.. +++++.+.. ..+... ........+...+.++.++|++|+||
T Consensus 162 G~Rerd~rn~~~~p~~-~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~l 240 (381)
T PRK11197 162 GARYRDAHSGMSGPNA-AMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI 240 (381)
T ss_pred CCChhhhhcCCCCCCc-hhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999999988842 333321100 001000 00111223455556889999999999
Q ss_pred HHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHH
Q 017781 221 QTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 296 (366)
Q Consensus 221 r~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kala 296 (366)
|+.|++||++|++++.++ .++|+|+|+||||||++++..+++++.|+++++++.+++|||+||||+++.||+|||+
T Consensus 241 r~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALa 320 (381)
T PRK11197 241 RDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA 320 (381)
T ss_pred HHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHH
Confidence 999999999999999998 9999999999999999999999999999999988866899999999999999999999
Q ss_pred hCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017781 297 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 353 (366)
Q Consensus 297 lGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~ 353 (366)
+||++|++||||+|+++..|++||.++++.|++||+.+|.++|+++++||++..+..
T Consensus 321 LGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~l~~ 377 (381)
T PRK11197 321 LGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLVQ 377 (381)
T ss_pred cCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhhhcc
Confidence 999999999999999999999999999999999999999999999999999887743
No 5
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=1.5e-79 Score=597.04 Aligned_cols=347 Identities=38% Similarity=0.592 Sum_probs=314.5
Q ss_pred CCCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEeccccc
Q 017781 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (366)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~ 81 (366)
.+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|++++++||+|++||+++++||++|||++
T Consensus 11 ~~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~ 90 (367)
T TIGR02708 11 VDFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAA 90 (367)
T ss_pred cCCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccC-CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCC
Q 017781 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (366)
Q Consensus 82 ~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~-~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p 160 (366)
+++.||++|.++|++|+++|++|++|+.+++++|||++.. +++.|||||+.+|++.+.++++||+++|+++|++|+|+|
T Consensus 91 ~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p 170 (367)
T TIGR02708 91 HKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADAT 170 (367)
T ss_pred hhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 9999999999999999999999999999999999999874 478999999999999999999999999999999999999
Q ss_pred CCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--
Q 017781 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238 (366)
Q Consensus 161 ~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d-- 238 (366)
+.|+|++|++++|.+|......+ ..+. . ..... ........++.++|++|+|+++.+++||++|++.+.+|
T Consensus 171 ~~g~R~~d~r~~~~~p~~~~~~~-~~~~-~----~~~~~-~~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda~ 243 (367)
T TIGR02708 171 VGGNREVDVRNGFVFPVGMPIVQ-EYLP-T----GAGKS-MDNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDAD 243 (367)
T ss_pred CCCcchhhhhcCCCCCCccchhh-hhcc-c----CCccc-hhhhccccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHHH
Confidence 99999999999998885332111 0000 0 00000 00111123577899999999999999999999999988
Q ss_pred --HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcC
Q 017781 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 316 (366)
Q Consensus 239 --~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G 316 (366)
.++|+|+|+||||||||++.++++++.|+++++++++++|||+||||+++.|++|||++|||+|+|||||||+++.+|
T Consensus 244 ~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G 323 (367)
T TIGR02708 244 RALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGG 323 (367)
T ss_pred HHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcC
Confidence 999999999999999999999999999999999887789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeecc
Q 017781 317 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 355 (366)
Q Consensus 317 ~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~ 355 (366)
++||.++++.|++||+.+|.++|+++++||++..+...+
T Consensus 324 ~~gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~~~ 362 (367)
T TIGR02708 324 SQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDLRHNP 362 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCccccccCC
Confidence 999999999999999999999999999999998885443
No 6
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=1.1e-79 Score=596.78 Aligned_cols=338 Identities=44% Similarity=0.713 Sum_probs=309.3
Q ss_pred HHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccccccCC
Q 017781 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (366)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~ 87 (366)
+|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|++++++||+|++||+++++||++||+|+++++||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhH
Q 017781 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (366)
Q Consensus 88 ~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~ 167 (366)
++|.++|++|++.|++|++|+++++++|||+++.+++.|||||+. +++.++++++||+++||++|+||+|+|+.|+|++
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999988777899999996 6999999999999999999999999999999999
Q ss_pred HHhhhcCCCCccccccccccccC----------------CCccc---cchhhHHHhhhccCCCCCHHHHHHHHHhcCCCE
Q 017781 168 DIKNRFTLPPFLTLKNFQGLDLG----------------KMDEA---NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPI 228 (366)
Q Consensus 168 d~~~~~~~p~~~~~~~~~~~~~~----------------~~~~~---~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv 228 (366)
|++++|.+|.++..+++.+.... +.... ...+...+...+.|+.++|+.|+|||+.|+.|+
T Consensus 160 d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pv 239 (361)
T cd04736 160 DLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKL 239 (361)
T ss_pred hhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCE
Confidence 99999998877666553321100 00000 011123344446788999999999999999999
Q ss_pred EEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEe
Q 017781 229 LVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 229 ~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~i 304 (366)
++|++.+.+| .++|+|+|+||||||+|++..++++++|+++++++ ++|||+||||+++.||+|||++||++|++
T Consensus 240 iiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--~~~vi~dGGIr~g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 240 LVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YKPVLIDSGIRRGSDIVKALALGANAVLL 317 (361)
T ss_pred EEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 9999999998 99999999999999999999999999999999988 59999999999999999999999999999
Q ss_pred cHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017781 305 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 348 (366)
Q Consensus 305 gr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~ 348 (366)
||||||+++..|++||+++++.|++||+.+|.++|+++++||++
T Consensus 318 Gr~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~ 361 (361)
T cd04736 318 GRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLTP 361 (361)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCc
Confidence 99999999999999999999999999999999999999999863
No 7
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=1.1e-78 Score=594.64 Aligned_cols=347 Identities=41% Similarity=0.669 Sum_probs=311.3
Q ss_pred CCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEeccccccc
Q 017781 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (366)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~ 83 (366)
++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|+|++++||+|+|||+++++||++||+++++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 84 l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
+.||++|.++|++|+++|++|++|+++++++|||++..+ ++.|||||+++|++.+.++++||+++||++|++|||+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 999999999999999999999999999999999998744 6899999999999999999999999999999999999999
Q ss_pred cchhHHHhhhcCCCCc--ccccccc-------ccccCCC-ccc----cchhhHHHhhhccCCCCCHHHHHHHHHhcCCCE
Q 017781 163 GRREADIKNRFTLPPF--LTLKNFQ-------GLDLGKM-DEA----NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPI 228 (366)
Q Consensus 163 g~r~~d~~~~~~~p~~--~~~~~~~-------~~~~~~~-~~~----~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv 228 (366)
|+|++|++++| .|.. ....++. .+..... ... .......+.....++.++|+.|+|+|+.|++||
T Consensus 178 g~Rerd~r~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pv 256 (383)
T cd03332 178 GWRPRDLDLGY-LPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256 (383)
T ss_pred CCchhhhhcCC-CCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCE
Confidence 99999999998 3431 1211110 0000000 000 001122233333578899999999999999999
Q ss_pred EEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEe
Q 017781 229 LVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 229 ~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~i 304 (366)
++|++.+.+| .++|+|+|+|||||||+++++++++++|+++++++++++|||+|||||+|.|++|||++|||+|++
T Consensus 257 ivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred EEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 9999999998 999999999999999999999999999999999987789999999999999999999999999999
Q ss_pred cHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017781 305 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 305 gr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l 351 (366)
||||+|+++..|++||+++++.+++||+.+|.++|+++++||+++.+
T Consensus 337 Gr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~~~ 383 (383)
T cd03332 337 GRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRDAL 383 (383)
T ss_pred cHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCcccC
Confidence 99999999999999999999999999999999999999999988653
No 8
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=9.6e-78 Score=583.73 Aligned_cols=343 Identities=42% Similarity=0.702 Sum_probs=312.3
Q ss_pred CCCChHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccc
Q 017781 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (366)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~ 82 (366)
.++|++|||+.||++||+++|+|++||++||.|+++|+++|++|.|+||+|+|++++||+|++||+++++||++|||+++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccC-CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Q 017781 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (366)
Q Consensus 83 ~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~-~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~ 161 (366)
.+.||++|.++|++|+++|+++++|+.+++++|||.+.. +++.|||||+++|++.+.++++||+++|+++|++|+|+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999876 4789999999999999999999999999999999999999
Q ss_pred CcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH---
Q 017781 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--- 238 (366)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--- 238 (366)
.|+|++|++++|.+|.+....+...... ....... ......++.++|++++|+|+.+++||++|++.++++
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~ 237 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEGT-----GKGKGIS-EIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADV 237 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhcccc-----ccCcchh-hhhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHH
Confidence 9999999999998886443322111000 0000000 111224567899999999999999999999999988
Q ss_pred -HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCH
Q 017781 239 -VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 317 (366)
Q Consensus 239 -~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~ 317 (366)
.++|+|+|+||||||+++++++++++.|+++++++++++|||++|||+++.|++|+|++|||+|+|||||+|+++..|+
T Consensus 238 a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~ 317 (351)
T cd04737 238 AINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGA 317 (351)
T ss_pred HHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchH
Confidence 9999999999999999999999999999999998877899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017781 318 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 318 ~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l 351 (366)
+||.++++.+++||+.+|.++|+++++|+++..|
T Consensus 318 ~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~ 351 (351)
T cd04737 318 QGVASVLEHLNKELKIVMQLAGTRTIEDVKRTFL 351 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHhCCCCC
Confidence 9999999999999999999999999999987653
No 9
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=1.2e-76 Score=579.47 Aligned_cols=339 Identities=51% Similarity=0.784 Sum_probs=302.0
Q ss_pred HHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccccccCChhhHHH
Q 017781 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (366)
Q Consensus 14 A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~l 93 (366)
||++||+..|+|++||+++|.|+++|+++|++|+|+||+|++++++||+|+|||+++++||++|||+++++.||++|.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhc
Q 017781 94 ARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (366)
Q Consensus 94 a~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~ 173 (366)
|++|+++|+++++|++++.++|++.+..+++.|||||.+.|++.+.++++||+++|+++++||+|+|..++|++|+|++|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccccCCC-------------ccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--
Q 017781 174 TLPPFLTLKNFQGLDLGKM-------------DEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED-- 238 (366)
Q Consensus 174 ~~p~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d-- 238 (366)
.+|.+++.+++.+....+. ..........+...+.++.++|+.|+|+++.|++||+||++++.+|
T Consensus 161 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~ 240 (356)
T PF01070_consen 161 SVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAK 240 (356)
T ss_dssp CCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHH
T ss_pred CCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHH
Confidence 9998887776654321111 0112223445666667888999999999999999999999999999
Q ss_pred --HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcC
Q 017781 239 --VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 316 (366)
Q Consensus 239 --~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G 316 (366)
.++|+|+|+||||||||+|+++++++.|+++++++++++|||+|||||+|.|++|||+|||++|++||||+|+++..|
T Consensus 241 ~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g 320 (356)
T PF01070_consen 241 RAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGG 320 (356)
T ss_dssp HHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHH
T ss_pred HHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhh
Confidence 999999999999999999999999999999999998899999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017781 317 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 352 (366)
Q Consensus 317 ~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~ 352 (366)
++||+++++.|++||+.+|.++|+++++||+++.|.
T Consensus 321 ~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~~~ 356 (356)
T PF01070_consen 321 EEGVERVLEILKEELKRAMFLLGARSIAELRRSLLR 356 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHhcC
Confidence 999999999999999999999999999999998763
No 10
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=2.5e-74 Score=559.89 Aligned_cols=335 Identities=47% Similarity=0.755 Sum_probs=305.3
Q ss_pred HHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccccccCC
Q 017781 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (366)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~ 87 (366)
+|||+.||++||+.+|+|++||++||+|+++|+++|++|.|+||+|++++++||+|+|||+++++||+||||+++++.||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCceecCCCCCCCHHHHhcc-CC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcch
Q 017781 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVAST-GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (366)
Q Consensus 88 ~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~-~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r 165 (366)
++|.++|++|.+.|++|++|+++++++|+|.+. .| .+.|||||.++|++.++++++|++++|+++|++|+|+|+.|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 999999999999999999999999999998876 34 6899999999999999999999999999999999999999999
Q ss_pred hHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHc
Q 017781 166 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQA 241 (366)
Q Consensus 166 ~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~a 241 (366)
++|++++|..|.++..++.... ....+...+.....++..+|+.++|+|+.+++||++|++.+.++ .++
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~ 233 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTK-------AKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEY 233 (344)
T ss_pred hhhhhhcCCcCccccccccccc-------cccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHc
Confidence 9999999988865544331100 01111222333345677899999999999999999999999888 999
Q ss_pred CCcEEEEcCCCccCCCCCcchHHHHHHHHHH---cCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHH
Q 017781 242 GAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 242 Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~---~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~ 318 (366)
|+|+|+||||||++++..++++++|+++++. +++++|||++|||+++.|++|+|++||++|+|||||++++.+.|++
T Consensus 234 G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~ 313 (344)
T cd02922 234 GVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEE 313 (344)
T ss_pred CCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHH
Confidence 9999999999999999989999999999885 3457999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 319 GVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 319 gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
||+++++.+++||+.+|.++|+++++||+++
T Consensus 314 gv~~~l~~l~~EL~~~m~l~G~~~i~~l~~~ 344 (344)
T cd02922 314 GVEKAIQILKDEIETTMRLLGVTSLDQLGPS 344 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhCcC
Confidence 9999999999999999999999999999753
No 11
>PLN02979 glycolate oxidase
Probab=100.00 E-value=1e-69 Score=523.33 Aligned_cols=317 Identities=90% Similarity=1.329 Sum_probs=286.3
Q ss_pred ceeeeccccCCCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCc
Q 017781 45 RILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGI 124 (366)
Q Consensus 45 ~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~ 124 (366)
-|.|+||+|+|++++||+|++||+++++||++||+|++++.||++|.++|++|+++|+++++|+.++.++|||++..+++
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999876678
Q ss_pred eEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHh
Q 017781 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (366)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (366)
.|||||+++|++.+.++++||+++||+++++|+|+|+.|+|++|++|+|.+|...+++++..............+...+.
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV 202 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999887666555432211000101122234455
Q ss_pred hhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 205 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 205 ~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
..+.++.++|++|+|+|+.|++||++|++.+.+| .++|+|+|+||||||+|+|+.++++++|+++++++.+++|||
T Consensus 203 ~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 203 AGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred hhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 5567888999999999999999999999999998 999999999999999999999999999999999887789999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccCCCCC
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLP 360 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~~~~~~ 360 (366)
+|||||+|.|++|||++|||+|++||||+|+++..|++||.++++.+++||+.+|.++|+++++|+++..+......++|
T Consensus 283 ~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~~~~~~~~~~ 362 (366)
T PLN02979 283 LDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRP 362 (366)
T ss_pred EeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776655554
Q ss_pred C
Q 017781 361 R 361 (366)
Q Consensus 361 ~ 361 (366)
.
T Consensus 363 ~ 363 (366)
T PLN02979 363 S 363 (366)
T ss_pred c
Confidence 3
No 12
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=9.7e-65 Score=492.72 Aligned_cols=345 Identities=44% Similarity=0.640 Sum_probs=315.4
Q ss_pred hHHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccccccC
Q 017781 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86 (366)
Q Consensus 7 ~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~ 86 (366)
+.|+++.|++++| +.|+|+.+|+++|.|+++|+++|++|.|+|++|++++++||+|+++|+++++||+||||+++++.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 3689999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchh
Q 017781 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (366)
Q Consensus 87 ~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~ 166 (366)
++++...+++|..+|.++++++++++++|++.+..+ ||+|+..+++...++++++.++|++.+++|+|.|..++|+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~ 155 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERE 155 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHH
Confidence 999999999999999999999999999999887643 9999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCccccccccccccCCCcccc----chhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----
Q 017781 167 ADIKNRFTLPPFLTLKNFQGLDLGKMDEAN----DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED---- 238 (366)
Q Consensus 167 ~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d---- 238 (366)
+|.++++..|......|+.+....+-.+.. .....++.....+|..+|++++|+++.|..|+++||+.+++|
T Consensus 156 ~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a 235 (360)
T COG1304 156 RDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGA 235 (360)
T ss_pred HHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhh
Confidence 999999988876666665443211100001 112345666667889999999999999999999999999888
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~ 318 (366)
.+.|+|+|++|||||+|+||++++++.|++++++++++++||+|||||+|.|++|||+||||+|++||||||+++.+|++
T Consensus 236 ~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~ 315 (360)
T COG1304 236 GGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEA 315 (360)
T ss_pred ccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHH
Confidence 88899999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccC
Q 017781 319 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 356 (366)
Q Consensus 319 gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~~ 356 (366)
||.++++.|++||+.+|.++|+++++||++..++....
T Consensus 316 GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~~ 353 (360)
T COG1304 316 GVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSGR 353 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHhccCceeeccc
Confidence 99999999999999999999999999999998876543
No 13
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=100.00 E-value=1.5e-58 Score=444.34 Aligned_cols=295 Identities=61% Similarity=0.950 Sum_probs=278.5
Q ss_pred HHHHHHHHHhCCccchhhhcCCccchhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccccccCC
Q 017781 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (366)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~ 87 (366)
.||++.|+++||+..|+|+.+|++++.|+++|+..|++|+|+||+|++++++||+|+|+|++++.||++|||++.++.|+
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred hhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhH
Q 017781 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (366)
Q Consensus 88 ~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~ 167 (366)
+++..+|++|+++|+++++|++++.+.+++.+..+++.|+|||...+++.+.++++++++.|+++|.+++|||..+.|
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-- 158 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-- 158 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--
Confidence 999999999999999999999888899999887778999999987799999999999999999999999999853211
Q ss_pred HHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCC
Q 017781 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGA 243 (366)
Q Consensus 168 d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGa 243 (366)
..|+.++++++.+++||++|++.+.++ .++|+
T Consensus 159 --------------------------------------------~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~ 194 (299)
T cd02809 159 --------------------------------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGA 194 (299)
T ss_pred --------------------------------------------CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCC
Confidence 468899999999999999999999887 99999
Q ss_pred cEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHH
Q 017781 244 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 323 (366)
Q Consensus 244 d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~ 323 (366)
|+|+++||||++.++++++++.|+++++.+++++|||++|||+++.|++|+|++|||+|++||||++++..+|++++.++
T Consensus 195 d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~ 274 (299)
T cd02809 195 DGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHV 274 (299)
T ss_pred CEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999998865799999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHcCCCChhhhcc
Q 017781 324 LEMLREEFELAMALSGCRSLKEITR 348 (366)
Q Consensus 324 ~~~l~~el~~~m~~~G~~~l~el~~ 348 (366)
++.+++||+.+|.++|+++++||++
T Consensus 275 i~~l~~el~~~m~~~G~~~i~~l~~ 299 (299)
T cd02809 275 LEILRDELERAMALLGCASLADLDP 299 (299)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHhCc
Confidence 9999999999999999999999974
No 14
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=100.00 E-value=4.2e-39 Score=312.59 Aligned_cols=266 Identities=27% Similarity=0.384 Sum_probs=211.6
Q ss_pred HhHhcccceeeeccccC--CCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCC--CC
Q 017781 38 ENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SS 113 (366)
Q Consensus 38 ~N~~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~--~~ 113 (366)
.+...||+|.|+|+.|+ +++++||+|+|+|+++++||++|||++++....+.+..+|++|+++|++|++++++. ..
T Consensus 17 ~~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~ 96 (326)
T cd02811 17 GGSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALED 96 (326)
T ss_pred cCCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccC
Confidence 35677999999999998 789999999999999999999999987653333457899999999999999998742 12
Q ss_pred ------HHHHhccCC-CceEEEeeecC----CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccc
Q 017781 114 ------VEEVASTGP-GIRFFQLYVYK----DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (366)
Q Consensus 114 ------~e~i~~~~~-~~~~~Qly~~~----d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~ 182 (366)
.+.+++..+ .+++.++.... +.+...+ .++..+++++.++++++..
T Consensus 97 ~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~---~i~~~~adalel~l~~~q~-------------------- 153 (326)
T cd02811 97 PELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARR---AVEMIEADALAIHLNPLQE-------------------- 153 (326)
T ss_pred hhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHH---HHHhcCCCcEEEeCcchHh--------------------
Confidence 233344445 56666665433 4444333 4455678999998875421
Q ss_pred cccccccCCCccccchhhHHHhhhccCCCC-CH-HHHHHHHHhcCCCEEEEec---cCHHH----HHcCCcEEEEcCCCc
Q 017781 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SW-KDVKWLQTITKLPILVKGV---LTAED----VQAGAAGIIVSNHGA 253 (366)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~-~~i~~lr~~~~~pv~vK~v---~~~~d----~~aGad~I~vs~~gg 253 (366)
..++..+.++ .| +.++++++.+++||++|++ .+.++ .++|+|+|+|+|+||
T Consensus 154 --------------------~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GG 213 (326)
T cd02811 154 --------------------AVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGG 213 (326)
T ss_pred --------------------hcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 0011122233 23 6799999999999999987 56666 899999999999988
Q ss_pred c---------C-----------CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 254 R---------Q-----------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 254 ~---------~-----------~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
+ + .+++.++.+.|.++++.+. ++|||++|||+++.|++|+|++|||+|++|||||+++.
T Consensus 214 t~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~ 292 (326)
T cd02811 214 TSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAAL 292 (326)
T ss_pred CcccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHh
Confidence 3 1 2346778889999988764 79999999999999999999999999999999999876
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017781 314 AEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 348 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~ 348 (366)
. |++++.++++.+.+||+.+|.++|+++++||+.
T Consensus 293 ~-g~~~~~~~i~~~~~el~~~m~~~G~~si~el~~ 326 (326)
T cd02811 293 E-GEEAVIETIEQIIEELRTAMFLTGAKNLAELKQ 326 (326)
T ss_pred c-CHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhcC
Confidence 6 999999999999999999999999999999973
No 15
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=100.00 E-value=7.3e-39 Score=313.51 Aligned_cols=275 Identities=26% Similarity=0.364 Sum_probs=219.0
Q ss_pred HhcccceeeeccccC--CCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCC--CC--
Q 017781 40 RNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SS-- 113 (366)
Q Consensus 40 ~~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~--~~-- 113 (366)
...||+|+|.|+.|+ +.++|||||+|+|.+++.||+++||++++-...+.|.+||++|+++|+++++++++. .+
T Consensus 27 ~~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~ 106 (352)
T PRK05437 27 TTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPE 106 (352)
T ss_pred CCChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChh
Confidence 456999999999998 788999999999999999999999988653333557899999999999999998852 11
Q ss_pred ----HHHHhccCC-CceEEEeeecCCHHH-HHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCcccccccccc
Q 017781 114 ----VEEVASTGP-GIRFFQLYVYKDRNV-VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (366)
Q Consensus 114 ----~e~i~~~~~-~~~~~Qly~~~d~~~-~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 187 (366)
.+.+++.+| .|.+.+|........ ..+..+.++..+++++.++++++..
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe------------------------- 161 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQE------------------------- 161 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchh-------------------------
Confidence 222344444 567777765433222 2233444556789999998876521
Q ss_pred ccCCCccccchhhHHHhhhccCCCCC--HHHHHHHHHhcCCCEEEEec---cCHHH----HHcCCcEEEEcCCCcc----
Q 017781 188 DLGKMDEANDSGLAAYVAGQIDRSLS--WKDVKWLQTITKLPILVKGV---LTAED----VQAGAAGIIVSNHGAR---- 254 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~i~~lr~~~~~pv~vK~v---~~~~d----~~aGad~I~vs~~gg~---- 254 (366)
..++..+.++. .+.++++++.+++||++|++ .+.++ .++|+|+|+|+|+||+
T Consensus 162 ---------------~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ 226 (352)
T PRK05437 162 ---------------LVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAA 226 (352)
T ss_pred ---------------hcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccc
Confidence 01111223332 36799999999999999988 66666 8899999999999882
Q ss_pred -----C---------CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHH
Q 017781 255 -----Q---------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 320 (366)
Q Consensus 255 -----~---------~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv 320 (366)
. .+++.++.+.|.++++.+ .++|||++|||+++.|++|+|++|||+|++||+||+++...|++++
T Consensus 227 ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v 305 (352)
T PRK05437 227 IENYRARDDRLASYFADWGIPTAQSLLEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAV 305 (352)
T ss_pred hhhhhhhccccccccccccCCHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHH
Confidence 2 256788999999998874 3799999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhhhcccceeecc
Q 017781 321 RRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 355 (366)
Q Consensus 321 ~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~~~ 355 (366)
.++++.+.+||+.+|.++|+++++||++..++..+
T Consensus 306 ~~~i~~~~~eL~~~m~~~G~~~i~eL~~~~~~~~~ 340 (352)
T PRK05437 306 IELIEQWIEELKIAMFLTGAKNIAELRKVPLVLSG 340 (352)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHhCCCCEEecH
Confidence 99999999999999999999999999998776544
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=100.00 E-value=1.6e-37 Score=302.35 Aligned_cols=272 Identities=26% Similarity=0.368 Sum_probs=210.8
Q ss_pred hcccceeeeccccC--CCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCC--C---
Q 017781 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS--S--- 113 (366)
Q Consensus 41 ~~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~--~--- 113 (366)
..||+|+|+|..|+ +++++||||+|+|+++++||+++||++++......+..++++|+++|+++++++++.. .
T Consensus 21 ~~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~ 100 (333)
T TIGR02151 21 TGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPET 100 (333)
T ss_pred CCcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhh
Confidence 45999999999997 6789999999999999999999999876522233478999999999999999987521 1
Q ss_pred ---HHHHhccCC-CceEEEeeecCCHH-HHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccc
Q 017781 114 ---VEEVASTGP-GIRFFQLYVYKDRN-VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188 (366)
Q Consensus 114 ---~e~i~~~~~-~~~~~Qly~~~d~~-~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~ 188 (366)
...+++..+ .|.+.++......+ ...+..+.++..+++++.++++++..
T Consensus 101 ~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~-------------------------- 154 (333)
T TIGR02151 101 ADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQE-------------------------- 154 (333)
T ss_pred HhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccccc--------------------------
Confidence 122333333 55666654322211 13334444556688999998876521
Q ss_pred cCCCccccchhhHHHhhhccCCCC-CH-HHHHHHHHhcCCCEEEEec---cCHHH----HHcCCcEEEEcCCCccC----
Q 017781 189 LGKMDEANDSGLAAYVAGQIDRSL-SW-KDVKWLQTITKLPILVKGV---LTAED----VQAGAAGIIVSNHGARQ---- 255 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~d~~~-~~-~~i~~lr~~~~~pv~vK~v---~~~~d----~~aGad~I~vs~~gg~~---- 255 (366)
..++..+.++ .| +.++++++.+++||++|.+ .+.+. .++|+|+|+|+|+||+.
T Consensus 155 --------------~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~i 220 (333)
T TIGR02151 155 --------------LVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQV 220 (333)
T ss_pred --------------ccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccch
Confidence 0111123333 23 6799999999999999987 56655 89999999999998753
Q ss_pred --------------CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHH
Q 017781 256 --------------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVR 321 (366)
Q Consensus 256 --------------~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~ 321 (366)
.+++.++.+.|.++++ +..++|||++|||+++.|++|+|++|||+|++||+||.++...|+++|.
T Consensus 221 e~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~ 299 (333)
T TIGR02151 221 ENYRAKGSNLASFFNDWGIPTAASLLEVRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVI 299 (333)
T ss_pred hhhcccccccchhhhcccHhHHHHHHHHHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHH
Confidence 2346677788888876 2237999999999999999999999999999999999987667999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017781 322 RVLEMLREEFELAMALSGCRSLKEITRDHIVT 353 (366)
Q Consensus 322 ~~~~~l~~el~~~m~~~G~~~l~el~~~~l~~ 353 (366)
++++.+.+||+.+|.++|+++++||++..++.
T Consensus 300 ~~i~~~~~eL~~~m~~~G~~~i~el~~~~~~~ 331 (333)
T TIGR02151 300 EEIELIIEELKVAMFLTGAKTIAELKKVPLVI 331 (333)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHccCCeEe
Confidence 99999999999999999999999999886653
No 17
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.97 E-value=3.8e-29 Score=239.68 Aligned_cols=251 Identities=20% Similarity=0.246 Sum_probs=189.2
Q ss_pred cccceeeeccccC--CCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH--
Q 017781 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-- 117 (366)
Q Consensus 42 ~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i-- 117 (366)
.||++.|+|..++ +.+++||+|+|+|++++.||++++|. ...|..||++|+++|...++..+ ++|+.
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~------t~in~~LA~~a~~~G~~~i~hK~---~~E~~~s 73 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQ------TIIDEKLAEQLAENGYFYIMHRF---DEESRIP 73 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccc------hhhhHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 6999999999997 45799999999999999999999994 25799999999999999998663 45543
Q ss_pred --hccCCCceEEEeeecCCHHHHHHHHHHHHHcC--CCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCc
Q 017781 118 --ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (366)
Q Consensus 118 --~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G--~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (366)
.+..+......+..+...+.. +.+....++| .+.+++ |+.+
T Consensus 74 fvrk~k~~~L~v~~SvG~t~e~~-~r~~~lv~a~~~~d~i~~--D~ah-------------------------------- 118 (321)
T TIGR01306 74 FIKDMQERGLFASISVGVKACEY-EFVTQLAEEALTPEYITI--DIAH-------------------------------- 118 (321)
T ss_pred HHHhccccccEEEEEcCCCHHHH-HHHHHHHhcCCCCCEEEE--eCcc--------------------------------
Confidence 233232223444444444433 3444455566 466655 4321
Q ss_pred cccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEe-ccCHHH----HHcCCcEEEEcCCCccCC--------CCCc
Q 017781 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAED----VQAGAAGIIVSNHGARQL--------DYVP 260 (366)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~-v~~~~d----~~aGad~I~vs~~gg~~~--------~~~~ 260 (366)
++....++.++++|+.++.|+++|+ +.+.++ .++|||+|.|++++|+.. ..+.
T Consensus 119 --------------g~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~ 184 (321)
T TIGR01306 119 --------------GHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 184 (321)
T ss_pred --------------CchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCc
Confidence 1122356789999999988867676 888887 999999999998877631 2223
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH--------------------HHhhh------
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------ 314 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~l~~------ 314 (366)
+.++++.+++++. ++|||+||||+++.|++|||++|||+||+|++|- +++..
T Consensus 185 ~~l~ai~ev~~a~--~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~ 262 (321)
T TIGR01306 185 WQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGE 262 (321)
T ss_pred hHHHHHHHHHHhc--CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhhhcccc
Confidence 4667899999887 7999999999999999999999999999999882 22110
Q ss_pred ----cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017781 315 ----EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 352 (366)
Q Consensus 315 ----~G~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~ 352 (366)
.|. ..+.+++..+...|+..|.++|+++++||+...++
T Consensus 263 ~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~~~~~~ 311 (321)
T TIGR01306 263 HKNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLRTVDYV 311 (321)
T ss_pred cccccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHhhCCEE
Confidence 010 12889999999999999999999999999977543
No 18
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.97 E-value=1.1e-28 Score=237.51 Aligned_cols=250 Identities=19% Similarity=0.243 Sum_probs=191.1
Q ss_pred cccceeeeccccC--CCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHh-
Q 017781 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (366)
Q Consensus 42 ~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~- 118 (366)
.||++.|+|..++ +++++|+||+|+|++++.||++++|. ...|..||++|+++|...++.-+ ++|+..
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~------t~iN~~LA~~a~~~G~~~~~~k~---~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQ------TIIDEKIAEWLAENGYFYIMHRF---DPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEeccc------chhHHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 5999999999997 56799999999999999999999994 25799999999999998888552 455432
Q ss_pred ---ccCCCceEEEeeecCCHHHHHHHHHHHHHcCC--CEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCc
Q 017781 119 ---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGF--KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (366)
Q Consensus 119 ---~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~--~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (366)
+..+...+..+-+..+++.. +.++...++|+ ++|+| |+...
T Consensus 77 ~~r~~~~~~l~v~~~vg~~~~~~-~~~~~Lv~ag~~~d~i~i--D~a~g------------------------------- 122 (326)
T PRK05458 77 FIKDMHEQGLIASISVGVKDDEY-DFVDQLAAEGLTPEYITI--DIAHG------------------------------- 122 (326)
T ss_pred HHHhccccccEEEEEecCCHHHH-HHHHHHHhcCCCCCEEEE--ECCCC-------------------------------
Confidence 33333334555555444433 34455556754 87776 43210
Q ss_pred cccchhhHHHhhhccCCCCCHHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCC------CCCcc-
Q 017781 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQL------DYVPA- 261 (366)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~------~~~~~- 261 (366)
+.....+.|+++|+.++ .||++|.+.+.++ .++|+|+|.|++++|++. ..+.+
T Consensus 123 ---------------h~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~ 187 (326)
T PRK05458 123 ---------------HSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 187 (326)
T ss_pred ---------------chHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCc
Confidence 11123456999999995 8888888999988 999999999999999651 22445
Q ss_pred -hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH------------------HHh-----hh---
Q 017781 262 -TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV------------------YSL-----AA--- 314 (366)
Q Consensus 262 -~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l------------------~~l-----~~--- 314 (366)
.++++.++++.+ ++|||++|||+++.|++|||++|||+||+|++|+ .-+ ..
T Consensus 188 w~l~ai~~~~~~~--~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~ 265 (326)
T PRK05458 188 WQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGE 265 (326)
T ss_pred cHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHhhhcccc
Confidence 455688998877 7999999999999999999999999999999997 111 01
Q ss_pred ----cCHH-------HHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017781 315 ----EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 315 ----~G~~-------gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l 351 (366)
+|.+ .+.+++..+..+|+..|.++|++++.||+...+
T Consensus 266 ~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~~~~~ 313 (326)
T PRK05458 266 YKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIRKVDY 313 (326)
T ss_pred ccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHhcCCE
Confidence 2323 488899999999999999999999999997633
No 19
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.96 E-value=2.1e-27 Score=226.02 Aligned_cols=252 Identities=22% Similarity=0.256 Sum_probs=189.3
Q ss_pred hcccceeeecccc--CCCCCCccceeEcCc-----ccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCC
Q 017781 41 NAFSRILFRPRIL--IDVSKIDMNTTVLGF-----KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS 113 (366)
Q Consensus 41 ~~f~~i~l~pr~l--~~~~~vd~st~l~g~-----~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~ 113 (366)
-.|||+.|+|+.- .+-+++||+++|..+ .+..||+-|.|--. ++.++|.+.+++|...+++- +.+
T Consensus 8 l~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv------~~~~mA~~la~~g~~~~iHk--~~~ 79 (343)
T TIGR01305 8 LDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTV------GTFEMAAALSQHSIFTAIHK--HYS 79 (343)
T ss_pred CCccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcc------cCHHHHHHHHHCCCeEEEee--CCC
Confidence 3699999999754 355899999999744 78999999999533 48899999999999999965 345
Q ss_pred HHHHhc----cCCCc-eEEEeeecCCHHHHHHHHHHHHHc--CCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccc
Q 017781 114 VEEVAS----TGPGI-RFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (366)
Q Consensus 114 ~e~i~~----~~~~~-~~~Qly~~~d~~~~~~~l~ra~~~--G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (366)
+|+..+ ..+.. ...-+..+-.+ ...+.++.+.++ +.+.|+| |+.+ |
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~vsvG~~~-~d~er~~~L~~a~~~~d~ivi--D~Ah----------G-------------- 132 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAVSSGSSD-NDLEKMTSILEAVPQLKFICL--DVAN----------G-------------- 132 (343)
T ss_pred HHHHHHHHHhhcccccceEEEEeccCH-HHHHHHHHHHhcCCCCCEEEE--ECCC----------C--------------
Confidence 665332 12211 11111222222 223455555555 4777776 3321 1
Q ss_pred cccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEe-ccCHHH----HHcCCcEEEEc-----CCCccCC
Q 017781 187 LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAED----VQAGAAGIIVS-----NHGARQL 256 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~-v~~~~d----~~aGad~I~vs-----~~gg~~~ 256 (366)
+.....+.|+|+|+.|+.+.++|| +.++++ .++|||+|.|+ +|++|+.
T Consensus 133 ----------------------hs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~ 190 (343)
T TIGR01305 133 ----------------------YSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTK 190 (343)
T ss_pred ----------------------cHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCcee
Confidence 122356789999999988889998 899987 99999999999 7888888
Q ss_pred CCCc-chHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH--------------------HHhhh
Q 017781 257 DYVP-ATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA 314 (366)
Q Consensus 257 ~~~~-~~~~~l~~i~~~~~~-~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~l~~ 314 (366)
++.. |++++|++++++.++ ++|||+||||+++.||+|||++|||+||+|+.|. ++++.
T Consensus 191 ~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS 270 (343)
T TIGR01305 191 TGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSS 270 (343)
T ss_pred CCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccch
Confidence 7754 899999999998876 7999999999999999999999999999997662 11111
Q ss_pred -----------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 315 -----------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 315 -----------------~G~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
+|. ..+.+++..+...|+..|.++|..+++||++.
T Consensus 271 ~~Am~~~~g~~~ry~~~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~ 329 (343)
T TIGR01305 271 DTAMKKHAGGVAEYRASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKR 329 (343)
T ss_pred HHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhC
Confidence 010 02788999999999999999999999999654
No 20
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.95 E-value=7.7e-26 Score=224.76 Aligned_cols=267 Identities=25% Similarity=0.267 Sum_probs=184.2
Q ss_pred CCccceeEcC-----cccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeec
Q 017781 58 KIDMNTTVLG-----FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVY 132 (366)
Q Consensus 58 ~vd~st~l~g-----~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~ 132 (366)
.++.++++.+ ..+..||+++||+++++ ..+...+++.++++.|....+++.. .+.+++.... ....|+- .
T Consensus 59 ~~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Gegg-~~~~~~~~~~--~~i~q~~-~ 133 (392)
T cd02808 59 EVDDRVTIGPNAEKPLKLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEGG-ELPEEREGGG--DIIKQVA-S 133 (392)
T ss_pred ccccceeeccccCCccccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCCC-CCHHHHhhhh--heEEEec-C
Confidence 3445666654 35679999999997765 3445679999999999999998754 5566665332 2344542 1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC---CCCcchhHHHhhhcCCCC-ccccccccccccCCCccc-cchhhHHHhhhc
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDT---PRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEA-NDSGLAAYVAGQ 207 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~---p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 207 (366)
.........++. ++++-+-+.. |..|. .+|. +++.. ++.. ..+..++.+++.
T Consensus 134 ~~fGv~~~~~~~-----~~~ieik~~QGAkpg~gg---------~l~~~Kv~~e---------iA~~r~~~~g~~~isp~ 190 (392)
T cd02808 134 GRFGVRPEYLNK-----ADAIEIKIGQGAKPGEGG---------HLPGEKVTEE---------IAKIRGIPPGVDLISPP 190 (392)
T ss_pred CCCccCHHHccc-----CcEEEEEeccCCCCCCCC---------ccccccCCHH---------HHHHhCCCCCccccCCC
Confidence 111121122211 4455554431 11111 0110 01100 0000 001122334444
Q ss_pred cCCCCC-----HHHHHHHHHhcC-CCEEEEeccC--HHH----H-HcCCcEEEEcCCCccC--------CCCCcchHHHH
Q 017781 208 IDRSLS-----WKDVKWLQTITK-LPILVKGVLT--AED----V-QAGAAGIIVSNHGARQ--------LDYVPATIMAL 266 (366)
Q Consensus 208 ~d~~~~-----~~~i~~lr~~~~-~pv~vK~v~~--~~d----~-~aGad~I~vs~~gg~~--------~~~~~~~~~~l 266 (366)
.++++. .+.|+++|+.++ +||++|++.+ .++ . ..|+|+|+|+|++|.+ .+++.|+...|
T Consensus 191 ~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L 270 (392)
T cd02808 191 PHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGL 270 (392)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHH
Confidence 455543 467999999998 9999999864 555 4 4459999999996543 35688999999
Q ss_pred HHHHHHc-----CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhc--------------------------
Q 017781 267 EEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-------------------------- 315 (366)
Q Consensus 267 ~~i~~~~-----~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~-------------------------- 315 (366)
.++++++ ++++|||++|||+++.|++|+|++|||+|++||+||+++.|.
T Consensus 271 ~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~ 350 (392)
T cd02808 271 ARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLD 350 (392)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcC
Confidence 9998765 347999999999999999999999999999999999988654
Q ss_pred ---CHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017781 316 ---GEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 352 (366)
Q Consensus 316 ---G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~ 352 (366)
|+++|.++++.+.+||+.+|..+|++++++++++++.
T Consensus 351 ~~~~~~~v~~~~~~~~~el~~~m~~~G~~~~~~l~~~~l~ 390 (392)
T cd02808 351 VEGKAERVANYLKSLAEELRELAAALGKRSLELLGRSDLL 390 (392)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCCChHHCCHHHhh
Confidence 7889999999999999999999999999999988764
No 21
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.94 E-value=1.2e-25 Score=220.46 Aligned_cols=285 Identities=21% Similarity=0.274 Sum_probs=186.2
Q ss_pred cccceeeeccccC--CCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCC-C---CCCCHH
Q 017781 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-W---STSSVE 115 (366)
Q Consensus 42 ~f~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~-~---~~~~~e 115 (366)
.||++.|+|. ++ +.++|||++.+.+..+..||+++||.+.+ +..++.+++++|...+++. . ...+.+
T Consensus 17 ~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gVt------~~~la~avs~~GglGvl~~~gl~~~~~~~e 89 (368)
T PRK08649 17 GLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDAVV------SPETAIELGKLGGLGVLNLEGLWTRYEDPE 89 (368)
T ss_pred CcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCcccC------CHHHHHHHHhCCCceEEeeccccccCCCHH
Confidence 6999999999 54 56899999999999999999999997654 7799999999999777762 1 223445
Q ss_pred HHhc----cCCC---ceEEEee-ecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCcccccccccc
Q 017781 116 EVAS----TGPG---IRFFQLY-VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (366)
Q Consensus 116 ~i~~----~~~~---~~~~Qly-~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 187 (366)
++.+ ..+. ...-+++ .+.+++.+.++++.+++++... -+.++....-.+.+-+. . .++..-.++
T Consensus 90 ~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~V~v-~vr~~~~~~~e~a~~l~-e----aGvd~I~vh-- 161 (368)
T PRK08649 90 PILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAGVIV-AVSLSPQRAQELAPTVV-E----AGVDLFVIQ-- 161 (368)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCeEEE-EEecCCcCHHHHHHHHH-H----CCCCEEEEe--
Confidence 4432 1110 0001111 1346677777777777754211 11121100000100000 0 000000000
Q ss_pred ccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCcc------CCC
Q 017781 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGAR------QLD 257 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~------~~~ 257 (366)
.+. ..+.|.. ..-.|..+.++++..++||+++.+.+.++ .++|||+|.+..++|+ ...
T Consensus 162 -------grt-~~~~h~~----~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g 229 (368)
T PRK08649 162 -------GTV-VSAEHVS----KEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLG 229 (368)
T ss_pred -------ccc-hhhhccC----CcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCC
Confidence 000 0011111 11257777777777899999988999887 8899999998754442 123
Q ss_pred CCcchHHHHHHHHHHcC--------CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCH------------
Q 017781 258 YVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE------------ 317 (366)
Q Consensus 258 ~~~~~~~~l~~i~~~~~--------~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~------------ 317 (366)
.+.|.+.++.+++++.. .++|||++|||+++.|++|||++|||+||+|++|+....+.|.
T Consensus 230 ~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s~~~~ 309 (368)
T PRK08649 230 IGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAAPHPS 309 (368)
T ss_pred CCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccCcccCCCc
Confidence 46788888888875421 1599999999999999999999999999999999654322111
Q ss_pred ------------HHHHHHHH----------HHHHHHHHHHHHcCCCChhhhcccceee
Q 017781 318 ------------KGVRRVLE----------MLREEFELAMALSGCRSLKEITRDHIVT 353 (366)
Q Consensus 318 ------------~gv~~~~~----------~l~~el~~~m~~~G~~~l~el~~~~l~~ 353 (366)
..+++++. .+...|++.|.++|+.+++||++..++.
T Consensus 310 ~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~~~~~~ 367 (368)
T PRK08649 310 LPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQKVEVVV 367 (368)
T ss_pred CCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHHhhcCeEe
Confidence 13778877 9999999999999999999999876643
No 22
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.94 E-value=2.6e-25 Score=217.62 Aligned_cols=285 Identities=21% Similarity=0.280 Sum_probs=184.2
Q ss_pred cccceeeecc-ccCCCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCC----CCCCHHH
Q 017781 42 AFSRILFRPR-ILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW----STSSVEE 116 (366)
Q Consensus 42 ~f~~i~l~pr-~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~----~~~~~e~ 116 (366)
.||+|.|+|. .-++.+++||++.+.+.++..||++|||++.+ +.+++..++++|...+++.. .+...+.
T Consensus 14 ~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagVt------d~~fr~~~~~~Galgvvsaegl~~~~~~~~~ 87 (369)
T TIGR01304 14 SLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDALV------SPEFAIELGELGGLGVLNLEGLWGRHEDPDP 87 (369)
T ss_pred CcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCccc------CHHHHHHHHHcCCcccccchHHHhcCCCHHH
Confidence 7999999996 55788999999999999999999999998765 78999999999997677531 1222222
Q ss_pred Hh----ccCCC-------ceEEEeee-cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccc
Q 017781 117 VA----STGPG-------IRFFQLYV-YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (366)
Q Consensus 117 i~----~~~~~-------~~~~Qly~-~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (366)
+. ...+. ....++|. +.+++.+.++++.+++++.. +-+.++ |. ...++.... +..+..+
T Consensus 88 ~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~Vt-vkiRl~-~~---~~~e~a~~l-~eAGad~--- 158 (369)
T TIGR01304 88 AIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSGVI-TAVRVS-PQ---NAREIAPIV-VKAGADL--- 158 (369)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHcCCCccChHHHHHHHHHHHhcceE-EEEecC-Cc---CHHHHHHHH-HHCCCCE---
Confidence 21 10000 00011111 24566666666666665521 112221 10 111111000 0000000
Q ss_pred cccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccC----C
Q 017781 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQ----L 256 (366)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~----~ 256 (366)
+ .+. .+. ..+.+.. ..-.|..+.++++..++||+++++.+.++ .++|||+|.++.+|+.. +
T Consensus 159 --I---~ih-grt-~~q~~~s----g~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~l 227 (369)
T TIGR01304 159 --L---VIQ-GTL-VSAEHVS----TSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVL 227 (369)
T ss_pred --E---EEe-ccc-hhhhccC----CCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCccccccc
Confidence 0 000 000 0011111 12258888888888999999988889887 78999999855444432 2
Q ss_pred CCCcchHHHHHHHHHHc-------CC-CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcC------------
Q 017781 257 DYVPATIMALEEVVKAT-------QG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG------------ 316 (366)
Q Consensus 257 ~~~~~~~~~l~~i~~~~-------~~-~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G------------ 316 (366)
..+.++.+++.+++++. ++ .+|||++|||+++.|++|||++|||+||+|++|+.+..+.|
T Consensus 228 g~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~~~ 307 (369)
T TIGR01304 228 GIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAAHP 307 (369)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhcCc
Confidence 34577778888776542 22 49999999999999999999999999999999987543321
Q ss_pred -----------HHH----HHHHH----------HHHHHHHHHHHHHcCCCChhhhccccee
Q 017781 317 -----------EKG----VRRVL----------EMLREEFELAMALSGCRSLKEITRDHIV 352 (366)
Q Consensus 317 -----------~~g----v~~~~----------~~l~~el~~~m~~~G~~~l~el~~~~l~ 352 (366)
..| +++++ ..|...|++.|..+|+.+++|+++..+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~~ 368 (369)
T TIGR01304 308 RLPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQKVSLT 368 (369)
T ss_pred cCCccccccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchhhhhhhhccee
Confidence 112 55554 3688999999999999999999987653
No 23
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.93 E-value=2.1e-24 Score=209.56 Aligned_cols=253 Identities=24% Similarity=0.330 Sum_probs=187.9
Q ss_pred cccceeeecccc-CCCCCCccceeEcC-cccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc
Q 017781 42 AFSRILFRPRIL-IDVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (366)
Q Consensus 42 ~f~~i~l~pr~l-~~~~~vd~st~l~g-~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (366)
.||++.|+|... .+.++||++|.|.+ ..+..||+.|||.+.+ +..++.+.+++|...++.. +.+.+++.+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt------~~~ma~ava~~GglGvi~~--~~~~~~~~~ 74 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVT------ESEMAIAMARLGGIGVIHR--NMSIEEQAE 74 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcCC------cHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 599999999865 46789999999988 8899999999997654 7789999999999878753 344555432
Q ss_pred c---CCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCcccc
Q 017781 120 T---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 196 (366)
Q Consensus 120 ~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 196 (366)
. ...+..+..-.+.++ ...+.++.+.++|++.++++...
T Consensus 75 ~i~~vk~~l~v~~~~~~~~-~~~~~~~~l~eagv~~I~vd~~~------------------------------------- 116 (325)
T cd00381 75 EVRKVKGRLLVGAAVGTRE-DDKERAEALVEAGVDVIVIDSAH------------------------------------- 116 (325)
T ss_pred HHHHhccCceEEEecCCCh-hHHHHHHHHHhcCCCEEEEECCC-------------------------------------
Confidence 1 112223322222232 23456667777899988775321
Q ss_pred chhhHHHhhhccCCCCCHHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCcc------CCCCCcchHHH
Q 017781 197 DSGLAAYVAGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGAR------QLDYVPATIMA 265 (366)
Q Consensus 197 ~~~~~~~~~~~~d~~~~~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~------~~~~~~~~~~~ 265 (366)
+++...++.++++|+..+ +||++..+.+.++ .++|+|+|+|+..+|. ...++.+++.+
T Consensus 117 -----------G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~ 185 (325)
T cd00381 117 -----------GHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATA 185 (325)
T ss_pred -----------CCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHH
Confidence 011223567899999874 8888888888877 8999999999643321 23467889999
Q ss_pred HHHHHHHcCC-CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhc-----------------------------
Q 017781 266 LEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE----------------------------- 315 (366)
Q Consensus 266 l~~i~~~~~~-~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~----------------------------- 315 (366)
+.++.+++.. ++|||++|||+++.|++|||++|||+||+||.|+-...+.
T Consensus 186 i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~ 265 (325)
T cd00381 186 VADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGD 265 (325)
T ss_pred HHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCccc
Confidence 9999887643 6999999999999999999999999999999985321110
Q ss_pred -------------C-------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017781 316 -------------G-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 316 -------------G-------~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l 351 (366)
| ...+.+++..+...|+..|.++|+.+++||++...
T Consensus 266 ~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~ 321 (325)
T cd00381 266 RYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKAR 321 (325)
T ss_pred cccccccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCe
Confidence 0 01388899999999999999999999999997643
No 24
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.92 E-value=1.4e-23 Score=203.35 Aligned_cols=252 Identities=23% Similarity=0.330 Sum_probs=176.0
Q ss_pred cccceeeecccc---CCCCCCccceeE-cCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH
Q 017781 42 AFSRILFRPRIL---IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (366)
Q Consensus 42 ~f~~i~l~pr~l---~~~~~vd~st~l-~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i 117 (366)
.||++.|+|... .+..++||++.+ .+.++..||+-|||...+ |..+|.+.++.|...++.- ++++|+.
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtVt------e~~mAiama~~Gglgvih~--~~~~e~q 75 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTVT------ESEMAIAMARLGGLGVIHR--NMSIEEQ 75 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTTS------SHHHHHHHHHTTSEEEEES--SSCHHHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccccc------hHHHHHHHHHhcCCceecC--CCCHHHH
Confidence 599999999874 455667777556 689999999999995433 7899999999999999864 3455433
Q ss_pred h-------ccCC-------CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCcccccc
Q 017781 118 A-------STGP-------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (366)
Q Consensus 118 ~-------~~~~-------~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (366)
. +..| +...+-...+... ...+.++.+.++|++.|+|.+ .+ +
T Consensus 76 ~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~-~~~er~~~L~~agvD~ivID~--a~----------g----------- 131 (352)
T PF00478_consen 76 AEEVKKVKRYYPNASKDEKGRLLVAAAVGTRD-DDFERAEALVEAGVDVIVIDS--AH----------G----------- 131 (352)
T ss_dssp HHHHHHHHTHHTTHHBHTTSCBCEEEEEESST-CHHHHHHHHHHTT-SEEEEE---SS----------T-----------
T ss_pred HHHHhhhccccccccccccccceEEEEecCCH-HHHHHHHHHHHcCCCEEEccc--cC----------c-----------
Confidence 2 1111 1222222222221 124456666778999998743 21 1
Q ss_pred ccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccC---
Q 017781 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQ--- 255 (366)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~--- 255 (366)
+.....+.++++|+.++ +||+...+.|.+- .++|||+|.|.-.+|..
T Consensus 132 -------------------------~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtT 186 (352)
T PF00478_consen 132 -------------------------HSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTT 186 (352)
T ss_dssp -------------------------TSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHH
T ss_pred -------------------------cHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCccccc
Confidence 11123467899999995 9999999998875 99999999998665641
Q ss_pred ---CCCCcchHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH--------------------HH
Q 017781 256 ---LDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YS 311 (366)
Q Consensus 256 ---~~~~~~~~~~l~~i~~~~~~-~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~ 311 (366)
...|.|.+.++.+++++..+ .+|||+||||+++.|++|||++|||+||+|+.|- ++
T Consensus 187 r~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrG 266 (352)
T PF00478_consen 187 REVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRG 266 (352)
T ss_dssp HHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEE
T ss_pred ccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecc
Confidence 24578899999999987643 7999999999999999999999999999999871 11
Q ss_pred hhh------------------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017781 312 LAA------------------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDH 350 (366)
Q Consensus 312 l~~------------------------~G~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~ 350 (366)
++. +|- ..+.+++..|...|+..|.++|..+|.||+...
T Consensus 267 MgS~~A~~~~~~~~~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 267 MGSLGAMKKRRGSGDRYFQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp TTSHHHHHHHSTTGCTCTSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred cccHHHHhhccccchhccccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence 110 011 138899999999999999999999999999763
No 25
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.92 E-value=3.6e-23 Score=203.98 Aligned_cols=252 Identities=20% Similarity=0.282 Sum_probs=180.6
Q ss_pred hcccceeeecccc-CCCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHh
Q 017781 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (366)
Q Consensus 41 ~~f~~i~l~pr~l-~~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~ 118 (366)
-.||++.|+|... ...+++|++|.+. ...+..||+.|||...+ +..+|.+.+++|...+++. +.++|++.
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt------~~~lA~AvA~aGGlGvI~~--~~~~e~l~ 81 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIHK--NMSIEAQR 81 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCC------CHHHHHHHHHCCCEEEecC--CCCHHHHH
Confidence 3699999999865 3567899999885 57789999999997543 6789999999999999873 45666543
Q ss_pred ccC------C--CceE------------------E------------------------Eee----ecCCHHHHHHHHHH
Q 017781 119 STG------P--GIRF------------------F------------------------QLY----VYKDRNVVAQLVRR 144 (366)
Q Consensus 119 ~~~------~--~~~~------------------~------------------------Qly----~~~d~~~~~~~l~r 144 (366)
+.. . .+.. + ||. .+..++ +.+.++.
T Consensus 82 ~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~-~~~~v~~ 160 (404)
T PRK06843 82 KEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDID-TIERVEE 160 (404)
T ss_pred HHHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHH-HHHHHHH
Confidence 210 0 0000 0 010 011122 3344555
Q ss_pred HHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhc
Q 017781 145 AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT 224 (366)
Q Consensus 145 a~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~ 224 (366)
+.++|++.|+| |+.. +++...++.++++|+.+
T Consensus 161 lv~aGvDvI~i--D~a~----------------------------------------------g~~~~~~~~v~~ik~~~ 192 (404)
T PRK06843 161 LVKAHVDILVI--DSAH----------------------------------------------GHSTRIIELVKKIKTKY 192 (404)
T ss_pred HHhcCCCEEEE--ECCC----------------------------------------------CCChhHHHHHHHHHhhC
Confidence 55566666655 2210 12223457799999998
Q ss_pred -CCCEEEEeccCHHH----HHcCCcEEEEcCCCc-----cCC-CCCcchHHHHHHHHHHcC-CCceEEEecCCCCHHHHH
Q 017781 225 -KLPILVKGVLTAED----VQAGAAGIIVSNHGA-----RQL-DYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVF 292 (366)
Q Consensus 225 -~~pv~vK~v~~~~d----~~aGad~I~vs~~gg-----~~~-~~~~~~~~~l~~i~~~~~-~~i~vi~~GGI~~~~dv~ 292 (366)
+.+|+++++.|.++ .++|+|+|.++...| +.. ..+.|.++++.++.+.+. ..+|||++|||+++.|++
T Consensus 193 p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~ 272 (404)
T PRK06843 193 PNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVV 272 (404)
T ss_pred CCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHH
Confidence 68999999999988 899999999864333 333 346788888877776653 269999999999999999
Q ss_pred HHHHhCcCEEEecHHHHH--------------------Hhhh-----cC-----------------HH----------HH
Q 017781 293 KALALGASGIFIGRPVVY--------------------SLAA-----EG-----------------EK----------GV 320 (366)
Q Consensus 293 kalalGAd~V~igr~~l~--------------------~l~~-----~G-----------------~~----------gv 320 (366)
|||++||++||+|++|.- +++. .| ++ .+
T Consensus 273 KALalGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~~~~~~v~eGveg~v~~~G~v 352 (404)
T PRK06843 273 KAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKL 352 (404)
T ss_pred HHHHcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhccccccccccccccccccCCCccEEEecCCCCH
Confidence 999999999999999832 1110 00 01 17
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 321 RRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 321 ~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
.+++..|...|+..|.++|+.++.||+..
T Consensus 353 ~~~~~~l~gglrs~m~y~Ga~~i~el~~~ 381 (404)
T PRK06843 353 KDILTQLKGGLMSGMGYLGAATISDLKIN 381 (404)
T ss_pred HHHHHHHHHHHHHHhhccCCCcHHHHHhc
Confidence 88999999999999999999999999854
No 26
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.91 E-value=7.3e-23 Score=194.95 Aligned_cols=252 Identities=20% Similarity=0.232 Sum_probs=183.1
Q ss_pred hcccceeeeccccC--CCCCCccceeEc-----CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCC
Q 017781 41 NAFSRILFRPRILI--DVSKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS 113 (366)
Q Consensus 41 ~~f~~i~l~pr~l~--~~~~vd~st~l~-----g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~ 113 (366)
-.|||+.|+|+... +-++|||+.+|. ...+..|++-|+|--. ++.++|.+.++.|...+++- +.+
T Consensus 9 l~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV------~~~~mA~~la~~g~~~~iHk--~~~ 80 (346)
T PRK05096 9 LGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTV------GTFEMAKALASFDILTAVHK--HYS 80 (346)
T ss_pred CCceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCcc------ccHHHHHHHHHCCCeEEEec--CCC
Confidence 46999999998543 447999988775 4557799999999533 48899999999999999964 355
Q ss_pred HHHHhc----cCCCc-eEEEeeecCCHHHHHHHHHHHHH--cCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccc
Q 017781 114 VEEVAS----TGPGI-RFFQLYVYKDRNVVAQLVRRAER--AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (366)
Q Consensus 114 ~e~i~~----~~~~~-~~~Qly~~~d~~~~~~~l~ra~~--~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (366)
+|+.++ ..+.. ...-+..+-.++. .+.++.+.+ +|++.|+|++ . +|
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~vavG~~~~d-~er~~~L~~~~~g~D~iviD~--A----------hG-------------- 133 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMVSTGTSDAD-FEKTKQILALSPALNFICIDV--A----------NG-------------- 133 (346)
T ss_pred HHHHHHHHHhccccccceEEEEecCCHHH-HHHHHHHHhcCCCCCEEEEEC--C----------CC--------------
Confidence 665432 22111 1111222333332 344444444 5888887743 2 11
Q ss_pred cccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCcc----C--
Q 017781 187 LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGAR----Q-- 255 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~----~-- 255 (366)
+.....+.|+++|+.+ +.+|+...+.|.+- .++|||+|.|.-..|. +
T Consensus 134 ----------------------hs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~v 191 (346)
T PRK05096 134 ----------------------YSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVK 191 (346)
T ss_pred ----------------------cHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccc
Confidence 1123457899999998 68899988988875 9999999999765553 1
Q ss_pred CCCCcchHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH--------------------HHhhh
Q 017781 256 LDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA 314 (366)
Q Consensus 256 ~~~~~~~~~~l~~i~~~~~~-~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~l~~ 314 (366)
...|.|.+.++.+++++... .+|||+||||++..|++|||++|||+||+|+.|- ++++.
T Consensus 192 tGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS 271 (346)
T PRK05096 192 TGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSS 271 (346)
T ss_pred cccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEecccc
Confidence 23467899999999887543 6899999999999999999999999999999872 22211
Q ss_pred c-------C-------HH----------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 315 E-------G-------EK----------GVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 315 ~-------G-------~~----------gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
. | +| .+.+++..+...|+..|.++|..++.||++.
T Consensus 272 ~~Am~~~~g~~~ry~~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~ 330 (346)
T PRK05096 272 ESAMKRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKR 330 (346)
T ss_pred HHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhC
Confidence 0 0 11 2888999999999999999999999999654
No 27
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.91 E-value=1.4e-22 Score=194.94 Aligned_cols=234 Identities=23% Similarity=0.316 Sum_probs=171.4
Q ss_pred cceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecC-CCC--------------------------CCC
Q 017781 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS--------------------------TSS 113 (366)
Q Consensus 61 ~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs-~~~--------------------------~~~ 113 (366)
++|+++|.++.+||++||...+ .+....+.+.+.|..+++. |.. +..
T Consensus 1 l~~~~~g~~l~npi~~aag~~~------~~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMG------SGVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCC------CCHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 4789999999999999994221 1334455566668887765 111 112
Q ss_pred HHH----Hhc---cCCCceEEEeeecCCHHHHHHHHHHHHHcC--CCEEEEecCCCCCcchhHHHhhhcCCCCccccccc
Q 017781 114 VEE----VAS---TGPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (366)
Q Consensus 114 ~e~----i~~---~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G--~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (366)
.+. +.+ ..+.|.++|++ ..+.+.+.+.++.+++++ ++++.+|+.||... +..
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~--------~~g---------- 135 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK--------GGG---------- 135 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC--------CCc----------
Confidence 222 111 11247899997 567888888888888763 99999999999641 100
Q ss_pred cccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--------HHcCCcEEEEcCCC-ccC
Q 017781 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--------VQAGAAGIIVSNHG-ARQ 255 (366)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--------~~aGad~I~vs~~g-g~~ 255 (366)
..+. .++.+..+.++++|+.+++||++|...+.++ .++|+|+|+++|+- |+.
T Consensus 136 -----------------~~l~--~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~ 196 (300)
T TIGR01037 136 -----------------IAIG--QDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMK 196 (300)
T ss_pred -----------------cccc--cCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccc
Confidence 0001 2445667889999999999999998866544 78999999998752 211
Q ss_pred CC---------------CCcc----hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcC
Q 017781 256 LD---------------YVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 316 (366)
Q Consensus 256 ~~---------------~~~~----~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G 316 (366)
.+ .+++ .++.+.++++.+ ++|||++|||++++|+.++|..|||+|++||++++. +
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~----p 270 (300)
T TIGR01037 197 IDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYR----G 270 (300)
T ss_pred cccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcC----c
Confidence 10 1222 246777787777 699999999999999999999999999999999863 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 317 EKGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 317 ~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
.+++.++++|+.+|+..|+++++|+++.
T Consensus 271 -----~~~~~i~~~l~~~~~~~g~~~~~e~~g~ 298 (300)
T TIGR01037 271 -----FAFKKIIEGLIAFLKAEGFTSIEELIGI 298 (300)
T ss_pred -----hHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 4778999999999999999999999864
No 28
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.90 E-value=1.2e-21 Score=190.57 Aligned_cols=235 Identities=19% Similarity=0.225 Sum_probs=166.7
Q ss_pred ccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecC-CCCCC--------------------------
Q 017781 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS-------------------------- 112 (366)
Q Consensus 60 d~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs-~~~~~-------------------------- 112 (366)
|++|+++|++|.+||++|.-+. +.+.+..+.+...|+++++. |....
T Consensus 1 dL~v~~~Gl~l~nPv~~ASg~~------~~~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~i 74 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASASPL------SRNLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYF 74 (325)
T ss_pred CceEEECCEecCCCCEeCCcCC------CCCHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCccccc
Confidence 6899999999999999976332 23555666688888887752 21100
Q ss_pred --------CHH----HHhcc---CCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCC
Q 017781 113 --------SVE----EVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (366)
Q Consensus 113 --------~~e----~i~~~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~ 177 (366)
.++ ++.+. ...|.+.|+. ..+.+...+.+++++++|++++.+|+.||... |
T Consensus 75 n~~g~~n~g~~~~~~~i~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~------------~- 140 (325)
T cd04739 75 PEYGRYNLGPEEYLELIRRAKRAVSIPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPTD------------P- 140 (325)
T ss_pred ccccccCcCHHHHHHHHHHHHhccCCeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC------------C-
Confidence 011 11111 1246677875 35667677888888888889998888874210 0
Q ss_pred ccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHH---H-----HHcCCcEEEEc
Q 017781 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE---D-----VQAGAAGIIVS 249 (366)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~---d-----~~aGad~I~vs 249 (366)
+. . +. ..+....+.++++++.+++||++|...+.. + .++|+|+|+++
T Consensus 141 ~~----------------~--g~-------~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 141 DI----------------S--GA-------EVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred Cc----------------c--cc-------hHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence 00 0 00 001234577999999999999999875432 2 88999999999
Q ss_pred CCC-ccCCC---------C---Cc----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHh
Q 017781 250 NHG-ARQLD---------Y---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 250 ~~g-g~~~~---------~---~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l 312 (366)
|+. +...+ + |+ -.++.+.++++.+ ++|||++|||++++|+.++|.+|||+|++||++++.
T Consensus 196 nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~- 272 (325)
T cd04739 196 NRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRH- 272 (325)
T ss_pred cCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhc-
Confidence 975 22111 1 11 1345566666655 799999999999999999999999999999999873
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 313 AAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 313 ~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
|+. ++..+.+||+.+|...|+++++|+++.
T Consensus 273 ---gp~----~~~~i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 273 ---GPD----YIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred ---Cch----HHHHHHHHHHHHHHHcCCCCHHHHhcc
Confidence 553 677899999999999999999999984
No 29
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.90 E-value=1.1e-21 Score=188.79 Aligned_cols=235 Identities=21% Similarity=0.259 Sum_probs=176.0
Q ss_pred ccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCCC--------------------------
Q 017781 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS-------------------------- 112 (366)
Q Consensus 60 d~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~~-------------------------- 112 (366)
|++|+++|++|++||++|+=.. +.+..+++.+.+.|.++++ .|....
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~------~~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTF------GFGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCC------CCCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 6899999999999999987211 2355788888888888875 333210
Q ss_pred CHH----HHhcc---CCCceEEEeeecCCHHHHHHHHHHHHHcC-CCEEEEecCCCCCcchhHHHhhhcCCCCccccccc
Q 017781 113 SVE----EVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (366)
Q Consensus 113 ~~e----~i~~~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~G-~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (366)
..+ ++.+. ...+...|+. ..+.+...+.+++++++| ++++.+++.||... .+ +.
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~-------~g-----g~----- 136 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVK-------HG-----GM----- 136 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCC-------CC-----cc-----
Confidence 112 11111 1246788986 467888889999999998 99999999998631 00 00
Q ss_pred cccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--------HHcCCcEEEEcCCC-ccC
Q 017781 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--------VQAGAAGIIVSNHG-ARQ 255 (366)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--------~~aGad~I~vs~~g-g~~ 255 (366)
.+ ..++.+.++.++++|+.+++||++|...+.++ .++|+|+|+++|.. |..
T Consensus 137 ------------------~~--~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~ 196 (301)
T PRK07259 137 ------------------AF--GTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMA 196 (301)
T ss_pred ------------------cc--ccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccc
Confidence 00 02345678899999999999999998866544 78999999997732 211
Q ss_pred C---------------CCC----cchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcC
Q 017781 256 L---------------DYV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 316 (366)
Q Consensus 256 ~---------------~~~----~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G 316 (366)
. ..+ +..++.+.++++.+ ++|||++|||++++|+.++|++|||+|++||++++.
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~----- 269 (301)
T PRK07259 197 IDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYD----- 269 (301)
T ss_pred cccccCceeecCCcCccCCcCcccccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcC-----
Confidence 0 011 22567888888887 799999999999999999999999999999999863
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 317 EKGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 317 ~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
+ .+++.++++++.+|...|+++++|+.+.
T Consensus 270 P----~~~~~i~~~l~~~~~~~g~~~i~~~~g~ 298 (301)
T PRK07259 270 P----YAFPKIIEGLEAYLDKYGIKSIEEIVGI 298 (301)
T ss_pred c----HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 3 4677899999999999999999999864
No 30
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.89 E-value=2.6e-21 Score=188.92 Aligned_cols=236 Identities=19% Similarity=0.198 Sum_probs=167.0
Q ss_pred ccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecC-CCC----------------------------
Q 017781 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS---------------------------- 110 (366)
Q Consensus 60 d~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs-~~~---------------------------- 110 (366)
|++|+++|.+|++||++|.-+.. .+.+..+.+.+.|++.++. |..
T Consensus 2 ~l~~~~~Gl~l~nPv~~asg~~~------~~~~~~~~~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T PRK07565 2 DLSTTYLGLTLRNPLVASASPLS------ESVDNVKRLEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDY 75 (334)
T ss_pred CceEEECCEecCCCCEecCcCCC------CCHHHHHHHHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhh
Confidence 68999999999999998874322 2334455577888776652 111
Q ss_pred -------CCCHHHHh-------ccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCC
Q 017781 111 -------TSSVEEVA-------STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 176 (366)
Q Consensus 111 -------~~~~e~i~-------~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p 176 (366)
+..+++.. +....|.+.|+.. .+.+...+.+++++++|++++.+|+.||.... +.
T Consensus 76 ~n~~gl~n~g~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~~-------~~--- 144 (334)
T PRK07565 76 FPEPAKFYVGPEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTDP-------DI--- 144 (334)
T ss_pred hhhhhccCcCHHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC-------CC---
Confidence 01111111 1112467888863 55666678888888899999999998863200 00
Q ss_pred CccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHH---H-----HHcCCcEEEE
Q 017781 177 PFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE---D-----VQAGAAGIIV 248 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~---d-----~~aGad~I~v 248 (366)
. +. ......++.++++++.+++||++|...... + .++|+|+|++
T Consensus 145 -------------------~--g~-------~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 145 -------------------S--GA-------EVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred -------------------c--cc-------cHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 0 00 001224688999999999999999775443 2 7899999999
Q ss_pred cCCCc-cCC---------CCC---c----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 249 SNHGA-RQL---------DYV---P----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 249 s~~gg-~~~---------~~~---~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
+|+.. ... .++ + -.++.+.++++.+ ++|||++|||++++|+.|+|.+|||+|++||++++.
T Consensus 197 ~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~ 274 (334)
T PRK07565 197 FNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRH 274 (334)
T ss_pred ECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhh
Confidence 98742 111 111 1 1345566666666 799999999999999999999999999999999873
Q ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017781 312 LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 350 (366)
Q Consensus 312 l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~ 350 (366)
|+ .+++.+.+||+.+|...|+++++|+++..
T Consensus 275 ----g~----~~~~~i~~~L~~~l~~~g~~~i~e~~g~~ 305 (334)
T PRK07565 275 ----GP----DYIGTILRGLEDWMERHGYESLQQFRGSM 305 (334)
T ss_pred ----Cc----HHHHHHHHHHHHHHHHcCCCCHHHHhccc
Confidence 54 47788999999999999999999999864
No 31
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.88 E-value=4.8e-21 Score=184.00 Aligned_cols=233 Identities=21% Similarity=0.270 Sum_probs=167.9
Q ss_pred ceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecC-CCCCC--------------------------CH
Q 017781 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS--------------------------SV 114 (366)
Q Consensus 62 st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs-~~~~~--------------------------~~ 114 (366)
+|+++|.++++||++|+ |..+ ....+.+.+...|.++++. |.+.. .+
T Consensus 1 ~~~~~G~~~~nP~~~aa-g~~~-----~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~ 74 (296)
T cd04740 1 SVELAGLRLKNPVILAS-GTFG-----FGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGV 74 (296)
T ss_pred CeEECCEEcCCCCEECC-CCCC-----CHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCH
Confidence 57899999999999995 2111 1234455444444777653 22111 11
Q ss_pred HH----Hhcc---CCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCcccccccccc
Q 017781 115 EE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (366)
Q Consensus 115 e~----i~~~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 187 (366)
++ +.+. ...|..+||. ..+.+...+.+++++++|++++.+|+.||....|-
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g--------------------- 132 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGGG--------------------- 132 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCc---------------------
Confidence 22 2111 1257889987 46778888899999999999999999999641110
Q ss_pred ccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--------HHcCCcEEEEcCCC-ccCCC-
Q 017781 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--------VQAGAAGIIVSNHG-ARQLD- 257 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--------~~aGad~I~vs~~g-g~~~~- 257 (366)
..+ . .++.+..+.++++|+.+++||++|...+.++ .++|+|+|+++|+. |+..+
T Consensus 133 -------------~~~-~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~ 196 (296)
T cd04740 133 -------------MAF-G--TDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDI 196 (296)
T ss_pred -------------ccc-c--CCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCccccccc
Confidence 000 0 2345567889999999999999998755433 78999999998752 22111
Q ss_pred --------------CCc----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHH
Q 017781 258 --------------YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG 319 (366)
Q Consensus 258 --------------~~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~g 319 (366)
.++ ..++.+.++++.+ ++|||++|||++++|+.++|++|||+|++||++++. +
T Consensus 197 ~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~-----p-- 267 (296)
T cd04740 197 ETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVD-----P-- 267 (296)
T ss_pred ccCceeecCCcceecCcccchHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcC-----h--
Confidence 122 2457788888877 799999999999999999999999999999999863 3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 320 VRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 320 v~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
.+++.++++|+++|+..|+++++|+++.
T Consensus 268 --~~~~~i~~~l~~~~~~~g~~~~~~~~g~ 295 (296)
T cd04740 268 --EAFKEIIEGLEAYLDEEGIKSIEELVGL 295 (296)
T ss_pred --HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 3678899999999999999999999863
No 32
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.87 E-value=4.6e-21 Score=186.03 Aligned_cols=245 Identities=16% Similarity=0.173 Sum_probs=180.6
Q ss_pred eEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHH--------HHhcc--CCCceEEEeeecC
Q 017781 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVE--------EVAST--GPGIRFFQLYVYK 133 (366)
Q Consensus 64 ~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e--------~i~~~--~~~~~~~Qly~~~ 133 (366)
++.+..+..|+++|||++.+ +.++++.|.++|..++.+++.+.... ..... .+.+..+||+ +.
T Consensus 2 ~i~~~~~~~~~~lAPM~g~t------d~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~-g~ 74 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGIT------DRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA-GS 74 (321)
T ss_pred ccCCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEe-CC
Confidence 35667888999999998765 88999999999999888887543211 01111 1246779997 67
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
|++.+.+.++++++.|++.|.+|+.||.. + +.-+ +.+..+. .+|++.
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~--~-------------v~~~----------------g~Gs~ll--~~p~~~ 121 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAK--K-------------VNRK----------------LAGSALL--QYPDLV 121 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHH--H-------------HcCC----------------CcccHHh--cCHHHH
Confidence 88888888888888999999999999952 0 0000 0112222 266677
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHH-------H-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAE-------D-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~-------d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.++.+++.+++||.+|.....+ + .++|+|+|++++....+...+++.++.+.++++.+ ++|||+
T Consensus 122 ~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~--~iPVI~ 199 (321)
T PRK10415 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV--SIPVIA 199 (321)
T ss_pred HHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhc--CCcEEE
Confidence 788999999999999999864221 1 78999999997654445556777899999999988 799999
Q ss_pred ecCCCCHHHHHHHHH-hCcCEEEecHHHH-----HHhh---h-cC----HHHHHHHHHHHHHHHHHHHHHcCCC-Chhhh
Q 017781 282 DGGVRRGTDVFKALA-LGASGIFIGRPVV-----YSLA---A-EG----EKGVRRVLEMLREEFELAMALSGCR-SLKEI 346 (366)
Q Consensus 282 ~GGI~~~~dv~kala-lGAd~V~igr~~l-----~~l~---~-~G----~~gv~~~~~~l~~el~~~m~~~G~~-~l~el 346 (366)
+|||++++|+.+++. .|||+||+||+++ +.-. . .| +...++.++.+.++++.+..+.|.. .+.++
T Consensus 200 nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (321)
T PRK10415 200 NGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIA 279 (321)
T ss_pred eCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHH
Confidence 999999999999998 6999999999654 3211 1 12 1234567788888888888887754 56666
Q ss_pred cccc
Q 017781 347 TRDH 350 (366)
Q Consensus 347 ~~~~ 350 (366)
++..
T Consensus 280 rk~~ 283 (321)
T PRK10415 280 RKHV 283 (321)
T ss_pred HHHH
Confidence 6654
No 33
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.87 E-value=1.4e-20 Score=185.25 Aligned_cols=248 Identities=20% Similarity=0.269 Sum_probs=175.1
Q ss_pred CCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCC-CC-------CC---------------
Q 017781 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-WS-------TS--------------- 112 (366)
Q Consensus 56 ~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~-~~-------~~--------------- 112 (366)
.+..|++|+|+|+++++||++|.-.. ..+....+.+.+.|++.++.- .+ +.
T Consensus 6 ~~~~dLst~~~Gl~l~NP~i~ASgp~------t~~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~ 79 (385)
T PLN02495 6 ASEPDLSVTVNGLKMPNPFVIGSGPP------GTNYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSA 79 (385)
T ss_pred cCCCcceEEECCEEcCCCcEeCCccC------CCCHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCccccccc
Confidence 35688999999999999999987322 224556666666788877621 10 00
Q ss_pred ----------------CHH----HHh---ccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHH
Q 017781 113 ----------------SVE----EVA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (366)
Q Consensus 113 ----------------~~e----~i~---~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d 168 (366)
.++ ++. +..+ .|.+..+....+.+...+++++++++|++++.+++.||...
T Consensus 80 ~~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~----- 154 (385)
T PLN02495 80 KGRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGM----- 154 (385)
T ss_pred ccccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-----
Confidence 122 221 1223 36677765446788888999999999999999999999631
Q ss_pred HhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--------HH
Q 017781 169 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--------VQ 240 (366)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--------~~ 240 (366)
+ .+.. +..+. .+++...+.++++|+.+++||++|...+..+ .+
T Consensus 155 -------~----~r~~----------------g~~~g--q~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~ 205 (385)
T PLN02495 155 -------P----ERKM----------------GAAVG--QDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALK 205 (385)
T ss_pred -------C----cCcc----------------chhhc--cCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHH
Confidence 0 0000 00001 2444555678999999999999999876654 88
Q ss_pred cCCcEEEEcCCCc--cCC----------------CCC---cc----hHHHHHHHHHHcC----CCceEEEecCCCCHHHH
Q 017781 241 AGAAGIIVSNHGA--RQL----------------DYV---PA----TIMALEEVVKATQ----GRIPVFLDGGVRRGTDV 291 (366)
Q Consensus 241 aGad~I~vs~~gg--~~~----------------~~~---~~----~~~~l~~i~~~~~----~~i~vi~~GGI~~~~dv 291 (366)
+|+|+|++.|+-. ..+ .+| ++ .+..+.++++.+. .++|||+.|||.+++|+
T Consensus 206 ~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da 285 (385)
T PLN02495 206 SGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDA 285 (385)
T ss_pred hCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHH
Confidence 9999999998642 111 011 11 2234455666552 25899999999999999
Q ss_pred HHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017781 292 FKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 292 ~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l 351 (366)
++.|.+||++|++++.+++. |+. +++.|.+||+.+|...|+++++|+++..+
T Consensus 286 ~e~i~aGAs~VQv~Ta~~~~----Gp~----vi~~i~~~L~~~m~~~G~~si~e~~G~~~ 337 (385)
T PLN02495 286 AEFILLGADTVQVCTGVMMH----GYP----LVKNLCAELQDFMKKHNFSSIEDFRGASL 337 (385)
T ss_pred HHHHHhCCCceeEeeeeeec----CcH----HHHHHHHHHHHHHHHcCCCCHHHHhCcCC
Confidence 99999999999999998763 654 67789999999999999999999998654
No 34
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.87 E-value=9.5e-21 Score=192.99 Aligned_cols=136 Identities=26% Similarity=0.344 Sum_probs=113.7
Q ss_pred HHHHHHHHHhcCCCEEEEe--ccCHHH----HHcCCcEEEEcCCCc-----c-CCCCCcchHHHHHHHHHHc-------C
Q 017781 214 WKDVKWLQTITKLPILVKG--VLTAED----VQAGAAGIIVSNHGA-----R-QLDYVPATIMALEEVVKAT-------Q 274 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~--v~~~~d----~~aGad~I~vs~~gg-----~-~~~~~~~~~~~l~~i~~~~-------~ 274 (366)
.+.|+++|+.++.++.|+. +.+.++ .++|||+|.|++|+| | +.+.++|+++++.++++++ +
T Consensus 271 ~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g 350 (502)
T PRK07107 271 KRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETG 350 (502)
T ss_pred HHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcC
Confidence 5779999999975555665 788887 999999999999999 5 5778899999999998875 2
Q ss_pred CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH--------------------HHhhh--------------------
Q 017781 275 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA-------------------- 314 (366)
Q Consensus 275 ~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~l~~-------------------- 314 (366)
.++|||+||||+++.|++|||++|||+||+|++|- ++++.
T Consensus 351 ~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~~~ 430 (502)
T PRK07107 351 VYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLSFE 430 (502)
T ss_pred CcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhccccccccccccccC
Confidence 25999999999999999999999999999999982 11111
Q ss_pred cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 315 EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 315 ~G~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
+|- ..+.+++..+...|+..|.++|..++.||+..
T Consensus 431 egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~ 472 (502)
T PRK07107 431 EGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQK 472 (502)
T ss_pred CccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhC
Confidence 010 12888999999999999999999999999865
No 35
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.87 E-value=2.7e-20 Score=177.58 Aligned_cols=236 Identities=25% Similarity=0.376 Sum_probs=164.0
Q ss_pred ccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCCCCHHHHhccCCCceEEE----------
Q 017781 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTSSVEEVASTGPGIRFFQ---------- 128 (366)
Q Consensus 60 d~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~~~~e~i~~~~~~~~~~Q---------- 128 (366)
+++++++|.++++||++|+ |.. ..+.....+..+.|.++++ .|....+ ++.+|.|+.|.
T Consensus 1 ~l~~~~~Gl~f~NPl~lAa-G~~-----~~~~~~~~~~~~~g~G~i~~ktvt~~p----q~Gnp~PR~~~l~~~~~~iN~ 70 (310)
T COG0167 1 DLSTEILGLKFPNPLGLAA-GFD-----GKNGEELDALAALGFGAIVTKTVTPEP----QEGNPKPRLFRLPEDEGLINR 70 (310)
T ss_pred CCceeecceecCCCCeEcc-cCC-----ccCHHHHHHHHhcCCceEEecCCCCcC----CCCCCCCeEEEecCcccHHHh
Confidence 5788999999999999987 221 1244455555555555553 4432211 11111111111
Q ss_pred ----------------------------ee---ecCCHHHHHHHHHHHHHcC-CCEEEEecCCCCCcchhHHHhhhcCCC
Q 017781 129 ----------------------------LY---VYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLP 176 (366)
Q Consensus 129 ----------------------------ly---~~~d~~~~~~~l~ra~~~G-~~ai~vtvd~p~~g~r~~d~~~~~~~p 176 (366)
+. .....+...+.+...++++ ++++.+|+.||.. |
T Consensus 71 mG~~N~G~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt-------------~ 137 (310)
T COG0167 71 MGFNNPGADAFLEELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNT-------------P 137 (310)
T ss_pred cCCCchhHHHHHHHHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCC-------------C
Confidence 11 1223455566666667766 7777777777752 1
Q ss_pred CccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--------HHcCCcEEEE
Q 017781 177 PFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--------VQAGAAGIIV 248 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--------~~aGad~I~v 248 (366)
+..+ + +.+++..-+.++++++..++||++|...+.+| .++|+|+|++
T Consensus 138 ----------------------g~~~-l--~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~ 192 (310)
T COG0167 138 ----------------------GGRA-L--GQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIA 192 (310)
T ss_pred ----------------------Chhh-h--ccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 0000 1 11444445668899999999999999987766 9999999999
Q ss_pred cCCCccCC--------------CC---Cc----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 249 SNHGARQL--------------DY---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 249 s~~gg~~~--------------~~---~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
.|+-.... .+ |+ -++..+.++++.++.++|||+.|||.|++|+++.|.+||++|++|++
T Consensus 193 ~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Ta 272 (310)
T COG0167 193 INTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTA 272 (310)
T ss_pred EeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeee
Confidence 99543110 12 22 25678888888887789999999999999999999999999999999
Q ss_pred HHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017781 308 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 308 ~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l 351 (366)
+++. |+. +++.+.++|.++|...|++|++|+.+..+
T Consensus 273 l~~~----Gp~----i~~~I~~~l~~~l~~~g~~si~d~iG~~~ 308 (310)
T COG0167 273 LIYK----GPG----IVKEIIKGLARWLEEKGFESIQDIIGSAL 308 (310)
T ss_pred eeee----Cch----HHHHHHHHHHHHHHHcCCCCHHHHhchhc
Confidence 9874 663 77889999999999999999999987654
No 36
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=9.9e-21 Score=183.45 Aligned_cols=246 Identities=24% Similarity=0.285 Sum_probs=190.9
Q ss_pred EcCcccCCceEecccccccccCChhhHHHHHHHHHcCC-ceecCCCCCC------CHHHHh--ccC--CCceEEEeeecC
Q 017781 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVA--STG--PGIRFFQLYVYK 133 (366)
Q Consensus 65 l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~-~~~vs~~~~~------~~e~i~--~~~--~~~~~~Qly~~~ 133 (366)
+....+..++++|||.+.+ |.++++.++++|. ..+.++|.+. +-+... ... ..|..+||. +.
T Consensus 4 ~~~~~~~~~~~lAPM~gvt------d~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-gs 76 (323)
T COG0042 4 IGLIELRNRVILAPMAGVT------DLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLG-GS 76 (323)
T ss_pred cccccccCcEEEecCCCCc------cHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEec-CC
Confidence 4556778999999998765 8899999999999 8888887542 111111 111 267899998 68
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
|++.+.+..+.+++.|++.|.||++||.. + ++ ..+.++.++ .+|++.
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~--------------~-V~----------------~~g~Ga~Ll--~~p~lv 123 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSP--------------K-VV----------------KGGAGAALL--KNPELL 123 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChH--------------H-hc----------------CCCcchhhc--CCHHHH
Confidence 89999999999999999999999999953 0 11 011233344 367777
Q ss_pred HHHHHHHHHhcC-CCEEEEeccCHHH------------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 214 WKDVKWLQTITK-LPILVKGVLTAED------------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 214 ~~~i~~lr~~~~-~pv~vK~v~~~~d------------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
.+.|+.+++.++ +||.||....+++ .++|++.++|+++...+...++..|+.+.++++.+++ +|||
T Consensus 124 ~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~-ipvi 202 (323)
T COG0042 124 AEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPS-IPVI 202 (323)
T ss_pred HHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCC-CeEE
Confidence 889999999994 9999998765432 8999999999876655667788999999999999943 9999
Q ss_pred EecCCCCHHHHHHHHH-hCcCEEEecHH-----HHHHh---hhcCH---HHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017781 281 LDGGVRRGTDVFKALA-LGASGIFIGRP-----VVYSL---AAEGE---KGVRRVLEMLREEFELAMALSGCRSLKEITR 348 (366)
Q Consensus 281 ~~GGI~~~~dv~kala-lGAd~V~igr~-----~l~~l---~~~G~---~gv~~~~~~l~~el~~~m~~~G~~~l~el~~ 348 (366)
++|+|.+.+|+.+.|. .|+|+||+||. +++.- ...|+ ......++.+..+++....+.|...+..+++
T Consensus 203 ~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~r~ 282 (323)
T COG0042 203 ANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKGLRRLRK 282 (323)
T ss_pred eCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999 68999999994 45431 12233 4567888999999999999998667788776
Q ss_pred cce
Q 017781 349 DHI 351 (366)
Q Consensus 349 ~~l 351 (366)
...
T Consensus 283 h~~ 285 (323)
T COG0042 283 HLG 285 (323)
T ss_pred HHH
Confidence 643
No 37
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.86 E-value=4.7e-20 Score=188.04 Aligned_cols=140 Identities=23% Similarity=0.376 Sum_probs=115.0
Q ss_pred CCCCCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCcc------CCCCCcchHHHHHHHHHHcC-CC
Q 017781 209 DRSLSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQ-GR 276 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~------~~~~~~~~~~~l~~i~~~~~-~~ 276 (366)
+....|+.|+++|+.+ ++||+++.+.+.++ .++|||+|.++.+.|. ..++|.|++.++.++++.+. ..
T Consensus 265 ~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~ 344 (495)
T PTZ00314 265 NSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERG 344 (495)
T ss_pred CchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcC
Confidence 3445678999999997 68999999999887 9999999999755442 24578889999888887654 26
Q ss_pred ceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH--------------------Hhhh------c---------------
Q 017781 277 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA------E--------------- 315 (366)
Q Consensus 277 i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~l~~------~--------------- 315 (366)
+|||++|||+++.|++|||++|||+||+|+.|.- +++. .
T Consensus 345 v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~~ 424 (495)
T PTZ00314 345 VPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIKV 424 (495)
T ss_pred CeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhccccccccccccccccc
Confidence 9999999999999999999999999999998832 1110 0
Q ss_pred --CH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017781 316 --GE-------KGVRRVLEMLREEFELAMALSGCRSLKEITR 348 (366)
Q Consensus 316 --G~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~ 348 (366)
|- ..+.+++..+..+|+..|.++|+.++.||+.
T Consensus 425 ~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 425 AQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred CCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence 00 1288999999999999999999999999987
No 38
>PLN02826 dihydroorotate dehydrogenase
Probab=99.86 E-value=8.9e-20 Score=181.28 Aligned_cols=119 Identities=28% Similarity=0.450 Sum_probs=97.4
Q ss_pred cCCCEEEEecc--CHHH--------HHcCCcEEEEcCCC-cc----------CCC---CCcc----hHHHHHHHHHHcCC
Q 017781 224 TKLPILVKGVL--TAED--------VQAGAAGIIVSNHG-AR----------QLD---YVPA----TIMALEEVVKATQG 275 (366)
Q Consensus 224 ~~~pv~vK~v~--~~~d--------~~aGad~I~vs~~g-g~----------~~~---~~~~----~~~~l~~i~~~~~~ 275 (366)
.++||++|+.. +.++ .++|+|+|+++|+. ++ +.. +|++ +++.+.++++.+++
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 46899999963 4333 88999999999952 11 111 2222 56788899888877
Q ss_pred CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017781 276 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 350 (366)
Q Consensus 276 ~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~ 350 (366)
++|||++|||.+++|++++|.+||++|+++|+++|. |+. ++..+++||.++|...|+++++|+.+..
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~----Gp~----~i~~I~~eL~~~l~~~G~~si~e~iG~~ 407 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYE----GPA----LIPRIKAELAACLERDGFKSIQEAVGAD 407 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhc----CHH----HHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 899999999999999999999999999999999883 653 7788999999999999999999998753
No 39
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.85 E-value=6.9e-20 Score=177.84 Aligned_cols=242 Identities=20% Similarity=0.233 Sum_probs=174.1
Q ss_pred cCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCC--------CHHHHhccCC--CceEEEeeecCCH
Q 017781 66 LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS--------SVEEVASTGP--GIRFFQLYVYKDR 135 (366)
Q Consensus 66 ~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~--------~~e~i~~~~~--~~~~~Qly~~~d~ 135 (366)
.+..+..|+++|||.+.+ +.++++.++++|..++.+++.+. ....+....+ .|..+||. ..++
T Consensus 2 ~~~~~~~~l~lAPm~~~t------~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~~ 74 (319)
T TIGR00737 2 GNIQLKSRVVLAPMAGVT------DSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSDP 74 (319)
T ss_pred CCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCCH
Confidence 567889999999998765 88999999999988888776431 1112222222 57889997 6788
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHH
Q 017781 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (366)
Q Consensus 136 ~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (366)
+.+.+.+++++++|+++|.+++.||.. .|.+ . +.+..+. .++.+..+
T Consensus 75 ~~~~~aa~~~~~~G~d~IelN~gcP~~-~~~~---~---------------------------~~Gs~l~--~~~~~~~e 121 (319)
T TIGR00737 75 DTMAEAAKINEELGADIIDINMGCPVP-KITK---K---------------------------GAGSALL--RDPDLIGK 121 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHH-HhcC---C---------------------------CccchHh--CCHHHHHH
Confidence 899999999999999999999999842 1110 0 0011111 24556678
Q ss_pred HHHHHHHhcCCCEEEEeccC-------HHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEec
Q 017781 216 DVKWLQTITKLPILVKGVLT-------AED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 283 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~~-------~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G 283 (366)
.++++|+.+++||.+|.... ..+ .++|+|+|++++....+...+++.++.+.++++.+ ++|||++|
T Consensus 122 i~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nG 199 (319)
T TIGR00737 122 IVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGNG 199 (319)
T ss_pred HHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEeC
Confidence 89999999999999997532 122 78899999997643223334567889999999888 79999999
Q ss_pred CCCCHHHHHHHHH-hCcCEEEecHHHHHHh-----h----hcCH----HHHHHHHHHHHHHHHHHHHHcCCC-Chhhhcc
Q 017781 284 GVRRGTDVFKALA-LGASGIFIGRPVVYSL-----A----AEGE----KGVRRVLEMLREEFELAMALSGCR-SLKEITR 348 (366)
Q Consensus 284 GI~~~~dv~kala-lGAd~V~igr~~l~~l-----~----~~G~----~gv~~~~~~l~~el~~~m~~~G~~-~l~el~~ 348 (366)
||++++|+.+++. .|||+||+||+++... . ..|+ ....+.++.+.++++...+..|.. .+..+++
T Consensus 200 gI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~ 279 (319)
T TIGR00737 200 DIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARK 279 (319)
T ss_pred CCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 9999999999995 7899999999876421 1 1121 134456677778888777777643 4555554
Q ss_pred c
Q 017781 349 D 349 (366)
Q Consensus 349 ~ 349 (366)
.
T Consensus 280 ~ 280 (319)
T TIGR00737 280 H 280 (319)
T ss_pred H
Confidence 4
No 40
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.85 E-value=6.3e-20 Score=176.55 Aligned_cols=211 Identities=23% Similarity=0.293 Sum_probs=149.7
Q ss_pred ccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCCC-------------------------C
Q 017781 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS-------------------------S 113 (366)
Q Consensus 60 d~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~~-------------------------~ 113 (366)
|++|+++|++|.+||++|+=.. +.+....+.+...|+++++ .|.... .
T Consensus 1 ~l~~~~~Gl~l~nPi~~aag~~------~~~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n 74 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLASAPP------TTSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNN 74 (299)
T ss_pred CCceEECCEEcCCCCEeCCcCC------CCCHHHHHHHHHhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccC
Confidence 6899999999999999998211 1244555555566776654 221110 0
Q ss_pred --------HHH----Hh---ccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCC
Q 017781 114 --------VEE----VA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (366)
Q Consensus 114 --------~e~----i~---~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~ 177 (366)
++. +. ...+ .|.+.|++...+.+.+.+.++++++.|++++.+|+.||....+
T Consensus 75 ~e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~------------ 142 (299)
T cd02940 75 IELISEKPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPE------------ 142 (299)
T ss_pred CccccccCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCC------------
Confidence 111 11 1122 4678898744488888889999988999999999999964100
Q ss_pred ccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--------HHcCCcEEEEc
Q 017781 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--------VQAGAAGIIVS 249 (366)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--------~~aGad~I~vs 249 (366)
+. .+..+. .+++...+.++++|+.+++||+||...+.++ .++|+|+|+++
T Consensus 143 ----~~----------------~G~~l~--~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 143 ----RG----------------MGAAVG--QDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred ----CC----------------Cchhhc--cCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 00 001111 2455566789999999999999998865432 88999999988
Q ss_pred CCCcc---------------------CCCCCcc----hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEe
Q 017781 250 NHGAR---------------------QLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 250 ~~gg~---------------------~~~~~~~----~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~i 304 (366)
|+... +..+|++ +++.+.++++.+.+++|||++|||++++|+.++|.+|||+||+
T Consensus 201 Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 201 NTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred cccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 75421 1112332 4788999998886679999999999999999999999999999
Q ss_pred cHHHHH
Q 017781 305 GRPVVY 310 (366)
Q Consensus 305 gr~~l~ 310 (366)
||.+++
T Consensus 281 ~ta~~~ 286 (299)
T cd02940 281 CTAVMN 286 (299)
T ss_pred ceeecc
Confidence 999876
No 41
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.85 E-value=9.7e-20 Score=175.83 Aligned_cols=236 Identities=19% Similarity=0.199 Sum_probs=165.5
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcC-CceecCCCCCC--------CHHHHhc------cC--CCceEEEeeecCC
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMTLSSWSTS--------SVEEVAS------TG--PGIRFFQLYVYKD 134 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G-~~~~vs~~~~~--------~~e~i~~------~~--~~~~~~Qly~~~d 134 (366)
+|+++|||++.+ +.++++.+.++| ...+.++|.+. ....+.+ .. +.|..+||+ +.+
T Consensus 1 ~~~~lAPMag~t------d~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g~~ 73 (312)
T PRK10550 1 MRVLLAPMEGVL------DSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL-GQY 73 (312)
T ss_pred CCeEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec-cCC
Confidence 589999998876 889999999999 78888887432 1111111 11 267899998 689
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCH
Q 017781 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 214 (366)
Q Consensus 135 ~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 214 (366)
++.+.+.++++++.|++.|.||+.||.. + +. + .+.+..++ .++.+..
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~--------------~-v~-~---------------~g~Gs~Ll--~~~~~~~ 120 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSK--------------T-VN-G---------------SGGGATLL--KDPELIY 120 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCch--------------H-Hh-c---------------CCCchHhh--cCHHHHH
Confidence 9999999999999999999999999863 0 00 0 01122223 2566677
Q ss_pred HHHHHHHHhc--CCCEEEEeccCH---HH--------HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEE
Q 017781 215 KDVKWLQTIT--KLPILVKGVLTA---ED--------VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 215 ~~i~~lr~~~--~~pv~vK~v~~~---~d--------~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi 280 (366)
+.++.+|+.+ ++||.||..... ++ .++|+|.|+|+++...+...+++ .++.+.++++.+ ++|||
T Consensus 121 eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~--~iPVi 198 (312)
T PRK10550 121 QGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL--TIPVI 198 (312)
T ss_pred HHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc--CCcEE
Confidence 8899999988 499999976533 22 88999999998755445555654 789999999888 79999
Q ss_pred EecCCCCHHHHHHHHH-hCcCEEEecHHH-----HHHhhhcCH--HHHHHHHHHHHHHHHHHHHHcCC-CChhhhccc
Q 017781 281 LDGGVRRGTDVFKALA-LGASGIFIGRPV-----VYSLAAEGE--KGVRRVLEMLREEFELAMALSGC-RSLKEITRD 349 (366)
Q Consensus 281 ~~GGI~~~~dv~kala-lGAd~V~igr~~-----l~~l~~~G~--~gv~~~~~~l~~el~~~m~~~G~-~~l~el~~~ 349 (366)
++|||.|++|+.++++ .|||+|||||++ ++.-...|. ...++.++.+.+.++......+. ..+.++++.
T Consensus 199 ~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~rk~ 276 (312)
T PRK10550 199 ANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQW 276 (312)
T ss_pred EeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 9999999999999997 689999999965 443222221 12344555566555432222221 234455554
No 42
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.85 E-value=1.4e-20 Score=183.63 Aligned_cols=245 Identities=25% Similarity=0.311 Sum_probs=147.3
Q ss_pred cccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCce-EEEeeecCCHHHHHHHHHHHH
Q 017781 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIR-FFQLYVYKDRNVVAQLVRRAE 146 (366)
Q Consensus 68 ~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~-~~Qly~~~d~~~~~~~l~ra~ 146 (366)
.++..||++++|++++++ ++.-.++|++++..|+.+..++.. .+.++.... ... ++|+- ........+.++
T Consensus 62 ~~l~~p~~is~MS~GaLS-~~a~~Ala~ga~~~G~~~ntGEGg-~~~~~~~~~--~~~~I~Q~~-sg~fGv~~~~l~--- 133 (368)
T PF01645_consen 62 LELSIPFMISAMSYGALS-EEAKEALAKGANMAGTASNTGEGG-ELPEERKAA--KDLRIKQIA-SGRFGVRPEYLK--- 133 (368)
T ss_dssp HHHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT----GGGCSB---TTSSEEEE--TT-TT--HHHHC---
T ss_pred hhheeeeecccCChhhcC-HHHHHHHHHHHHHhCceEecCCCC-CCHHHhccc--CCceEEEcC-CCCCCCCHHHhc---
Confidence 457899999999998765 566789999999999998888864 344444332 234 88964 333444444443
Q ss_pred HcCCCEEEEecCC---CCCcchhHHHhhhcCCCC-cccc--ccccccccCCCccccchhhHHHhhhccCCCC-C---H-H
Q 017781 147 RAGFKAIALTVDT---PRLGRREADIKNRFTLPP-FLTL--KNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-S---W-K 215 (366)
Q Consensus 147 ~~G~~ai~vtvd~---p~~g~r~~d~~~~~~~p~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~---~-~ 215 (366)
.++.|-|-+.. |..|.. +|. +++. +.+..+ ......+++...+++ + + +
T Consensus 134 --~a~~iEIKigQGAKpG~GG~---------Lp~~KV~~~ia~~R~~----------~~g~~~iSP~~h~di~s~edl~~ 192 (368)
T PF01645_consen 134 --QADMIEIKIGQGAKPGEGGH---------LPGEKVTEEIARIRGV----------PPGVDLISPPPHHDIYSIEDLAQ 192 (368)
T ss_dssp --C-SEEEEE---TTSTTT--E---------E-GGG--HHHHHHHTS-----------TT--EE--SS-TT-SSHHHHHH
T ss_pred --CCCeEEEEEecCccccCcce---------echhhchHHHHHHhCC----------CCCCccccCCCCCCcCCHHHHHH
Confidence 45677776653 221110 110 0100 000000 000111222222222 2 2 3
Q ss_pred HHHHHHHhc-CCCEEEEeccC--HHH-----HHcCCcEEEEcCCCc-cC-------CCCCcchHHHHHHHHHHc-----C
Q 017781 216 DVKWLQTIT-KLPILVKGVLT--AED-----VQAGAAGIIVSNHGA-RQ-------LDYVPATIMALEEVVKAT-----Q 274 (366)
Q Consensus 216 ~i~~lr~~~-~~pv~vK~v~~--~~d-----~~aGad~I~vs~~gg-~~-------~~~~~~~~~~l~~i~~~~-----~ 274 (366)
.|++||+.. ++||.+|.+.. .++ .++|+|+|++++++| +. .+.|.|....|.++.+.+ +
T Consensus 193 ~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr 272 (368)
T PF01645_consen 193 LIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLR 272 (368)
T ss_dssp HHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCC
Confidence 589999998 89999998742 233 899999999999754 32 246788888898888775 4
Q ss_pred CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhc-----------------------------CHHHHHHHHH
Q 017781 275 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLE 325 (366)
Q Consensus 275 ~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~-----------------------------G~~gv~~~~~ 325 (366)
+++.|+++||++++.|++|||+||||+|.+||++|+++.|. +++.|.+++.
T Consensus 273 ~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~ 352 (368)
T PF01645_consen 273 DRVSLIASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLK 352 (368)
T ss_dssp CCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHH
T ss_pred CceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHH
Confidence 68999999999999999999999999999999999998663 3577999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 017781 326 MLREEFELAMALSGCR 341 (366)
Q Consensus 326 ~l~~el~~~m~~~G~~ 341 (366)
.+.+|++..|+.+|.+
T Consensus 353 ~~~~el~~~~~a~G~~ 368 (368)
T PF01645_consen 353 ACAEELREILAALGKR 368 (368)
T ss_dssp HHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999999964
No 43
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.85 E-value=6.2e-20 Score=185.74 Aligned_cols=298 Identities=24% Similarity=0.353 Sum_probs=186.0
Q ss_pred cccceeeeccccC-CCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc
Q 017781 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (366)
Q Consensus 42 ~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (366)
.|||+.|+|.... ..+++|++|.+- +.+++.|++.|||...+ |.+++.+.++.|...++.. ++++|+..+
T Consensus 3 t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtvT------e~ema~~ma~~gg~GvI~~--n~~~e~q~~ 74 (450)
T TIGR01302 3 TFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVT------ESRMAIAMAREGGIGVIHR--NMSIEEQAE 74 (450)
T ss_pred CccceEecccccccCccccccccccccccCcCCCeeecCCCccC------HHHHHHHHHhcCCCceeec--CCCHHHHHH
Confidence 5999999998653 456899999987 78999999999996543 7788888888887777753 455543322
Q ss_pred ----cC--CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCC----CCc-chhHHHh-------------h--h-
Q 017781 120 ----TG--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP----RLG-RREADIK-------------N--R- 172 (366)
Q Consensus 120 ----~~--~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p----~~g-~r~~d~~-------------~--~- 172 (366)
.. .....-++..-.......+.++...+.++..+.|.=+.. ..| -..+|+. . .
T Consensus 75 ~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~~~~~V~dvm~~~~~ 154 (450)
T TIGR01302 75 QVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKDKGKPVSEVMTREEV 154 (450)
T ss_pred HHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhcCCCCHHHhhCCCCC
Confidence 11 111001111111223344556666667777666543220 000 0011111 0 0
Q ss_pred cCCCCcccccc------------------------------cc-ccccCCCcc---c------c----c---hhhHHHhh
Q 017781 173 FTLPPFLTLKN------------------------------FQ-GLDLGKMDE---A------N----D---SGLAAYVA 205 (366)
Q Consensus 173 ~~~p~~~~~~~------------------------------~~-~~~~~~~~~---~------~----~---~~~~~~~~ 205 (366)
..++....+.. +. .+..+...+ . . . ......+.
T Consensus 155 ~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L~~ 234 (450)
T TIGR01302 155 ITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEALVK 234 (450)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHHHH
Confidence 00000000000 00 000000000 0 0 0 00000111
Q ss_pred ----------hccCCCCCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCcc-----C-CCCCcchHH
Q 017781 206 ----------GQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGAR-----Q-LDYVPATIM 264 (366)
Q Consensus 206 ----------~~~d~~~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~-----~-~~~~~~~~~ 264 (366)
.+++....++.|+++|+.+ ++||+++.+.+.++ .++|||+|.|+.+.|. . ..++.|+++
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~ 314 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQIT 314 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHH
Confidence 1112233457799999995 89999999999987 9999999999866552 1 246888999
Q ss_pred HHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH--------------------HHhhh---------
Q 017781 265 ALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA--------- 314 (366)
Q Consensus 265 ~l~~i~~~~~-~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~l~~--------- 314 (366)
++.++++++. .++|||++|||+++.|++|||++||++||+|+.|. ++++.
T Consensus 315 ~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~~~~ 394 (450)
T TIGR01302 315 AVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSS 394 (450)
T ss_pred HHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhcccc
Confidence 9999987653 37999999999999999999999999999999883 11110
Q ss_pred ---------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhc
Q 017781 315 ---------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEIT 347 (366)
Q Consensus 315 ---------------~G~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~ 347 (366)
+|- ..|.+++..+...|+..|.++|+.++.||+
T Consensus 395 ~ry~~~~~~~~~~~~egv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 449 (450)
T TIGR01302 395 DRYLQDENKTKKFVPEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDELR 449 (450)
T ss_pred ccccccccccccccCCceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHHh
Confidence 011 137889999999999999999999999986
No 44
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.84 E-value=2.1e-19 Score=173.56 Aligned_cols=237 Identities=18% Similarity=0.183 Sum_probs=164.7
Q ss_pred ccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCCC--------------------------
Q 017781 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS-------------------------- 112 (366)
Q Consensus 60 d~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~~-------------------------- 112 (366)
|++|+++|.+|++||++|+=... .+.+..+.+.+.|.++++ .|....
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~------~~~e~~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYC------MTKEELEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL 74 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence 68999999999999999983211 244556668888888775 332111
Q ss_pred CHH----HHhc---cCC-CceEEEeeecCCHHHHHHHHHHHHHcC-CCEEEEecCCCCCcchhHHHhhhcCCCCcccccc
Q 017781 113 SVE----EVAS---TGP-GIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (366)
Q Consensus 113 ~~e----~i~~---~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G-~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (366)
.++ ++.+ ..+ .|.+.++. ..+.+...+.+++++++| ++++.+|+.||..... .
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~-G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~----------------~- 136 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVV-GLSPEETHTILKKIQASDFNGLVELNLSCPNVPGK----------------P- 136 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEE-eCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCc----------------c-
Confidence 111 1111 111 34555654 455666677888888887 8899999998853100 0
Q ss_pred ccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHH--H--------HHcCCcEEEEcCCCc
Q 017781 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE--D--------VQAGAAGIIVSNHGA 253 (366)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~--d--------~~aGad~I~vs~~gg 253 (366)
.+ ..|++...+.++++|+.+++||++|...+.+ + .+.|+++|...|.-|
T Consensus 137 ------------------~~---g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~ 195 (310)
T PRK02506 137 ------------------QI---AYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIG 195 (310)
T ss_pred ------------------cc---ccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCC
Confidence 00 0133345677999999999999999875432 1 355778777666311
Q ss_pred ----------cC-C-----C---CCc----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 254 ----------RQ-L-----D---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 254 ----------~~-~-----~---~~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+. . . +|+ -.+..+.++++.++.++|||++|||.+++|++++|.+||++||+++++++
T Consensus 196 ~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~ 275 (310)
T PRK02506 196 NGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK 275 (310)
T ss_pred CceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence 10 0 1 122 24566777777776689999999999999999999999999999999987
Q ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 311 SLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 311 ~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
. |+ .++..+.+||+.+|...|+++++|+++.
T Consensus 276 ~----gp----~~~~~i~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 276 E----GP----AVFERLTKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred h----Ch----HHHHHHHHHHHHHHHHhCCCCHHHHhCh
Confidence 3 54 3677899999999999999999999873
No 45
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.84 E-value=2.1e-19 Score=182.00 Aligned_cols=137 Identities=26% Similarity=0.351 Sum_probs=112.7
Q ss_pred CHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccC------CCCCcchHHHHHHHHHHcCC-CceEE
Q 017781 213 SWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~------~~~~~~~~~~l~~i~~~~~~-~i~vi 280 (366)
..+.++++|+.+ ++||++-.+.+.+. .++|||+|.|+..+|+. ..+|.+++..+.+++++... .+|||
T Consensus 253 ~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~vi 332 (475)
T TIGR01303 253 MISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVW 332 (475)
T ss_pred HHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEE
Confidence 456799999987 79999977888887 99999999999887752 34688899888888765432 69999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHHHH---------------------HHhhh-----------------------cC
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRPVV---------------------YSLAA-----------------------EG 316 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~~l---------------------~~l~~-----------------------~G 316 (366)
++|||+++.|++|||++||++||+|+.|- ++++. +|
T Consensus 333 adGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~v~eG 412 (475)
T TIGR01303 333 ADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKALFEEG 412 (475)
T ss_pred EeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhccccccCc
Confidence 99999999999999999999999999871 11110 12
Q ss_pred HHH-----------HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 317 EKG-----------VRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 317 ~~g-----------v~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
-+| +.+++..+...|+..|.++|+.++.||+..
T Consensus 413 v~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~ 456 (475)
T TIGR01303 413 ISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHER 456 (475)
T ss_pred eecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhC
Confidence 222 778899999999999999999999999866
No 46
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.84 E-value=2.6e-19 Score=180.08 Aligned_cols=244 Identities=20% Similarity=0.262 Sum_probs=171.6
Q ss_pred CccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCC----CC---------------------
Q 017781 59 IDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWS----TS--------------------- 112 (366)
Q Consensus 59 vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~----~~--------------------- 112 (366)
.|++|+++|++|.+||++|+=. +. +....+.+.. +.|+++++ .|.. +.
T Consensus 2 ~~L~~~~~Gl~l~nPv~~aag~---~~--~~~~~~~~~~-~~g~Gavv~kti~~~~gn~~~pr~~~~~~~~~~~~g~~n~ 75 (420)
T PRK08318 2 ADLSITFCGIKSPNPFWLASAP---PT--NKYYNVARAF-EAGWGGVVWKTLGPPIVNVSSPRFGALVKEDRRFIGFNNI 75 (420)
T ss_pred CCceEEECCEecCCCcEeCCcC---CC--CCHHHHHHHH-HhCCCEEEEeecCCCCCCCCCCeEEEecCCCcccccccCc
Confidence 4789999999999999999721 11 1233444444 35766543 1110 00
Q ss_pred ------CHH----HH---hccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC-cchhHHHhhhcCCCC
Q 017781 113 ------SVE----EV---ASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL-GRREADIKNRFTLPP 177 (366)
Q Consensus 113 ------~~e----~i---~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~-g~r~~d~~~~~~~p~ 177 (366)
.++ .+ .+..+ .+.++|+....+.+...+.++.++++|+++|.+|+.||.. ..| ++
T Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~------~~---- 145 (420)
T PRK08318 76 ELITDRPLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSER------GM---- 145 (420)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCcccc------CC----
Confidence 112 11 11222 4567898744377888889999999999999999999962 111 00
Q ss_pred ccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH--------HHcCCcEEEEc
Q 017781 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--------VQAGAAGIIVS 249 (366)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--------~~aGad~I~vs 249 (366)
+..+. .++....+.++++++.+++||+||...+..+ .++|+|+|++.
T Consensus 146 -----------------------g~~~~--~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~ 200 (420)
T PRK08318 146 -----------------------GSAVG--QVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLI 200 (420)
T ss_pred -----------------------ccccc--CCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEe
Confidence 00111 2455566789999999999999998864432 78999999976
Q ss_pred CCC-c-----------------c---CCCCCcc----hHHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHhCcCEEE
Q 017781 250 NHG-A-----------------R---QLDYVPA----TIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIF 303 (366)
Q Consensus 250 ~~g-g-----------------~---~~~~~~~----~~~~l~~i~~~~~-~~i~vi~~GGI~~~~dv~kalalGAd~V~ 303 (366)
|+- + + +..+|++ .++.+.++++.++ .++|||++|||.+++|++++|.+|||+||
T Consensus 201 Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vq 280 (420)
T PRK08318 201 NTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQ 280 (420)
T ss_pred cccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChhe
Confidence 642 1 1 1122444 4788888887764 37999999999999999999999999999
Q ss_pred ecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017781 304 IGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 304 igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l 351 (366)
|||.+++. |+. ++..|.+||+.+|...|+.++.++.+..+
T Consensus 281 i~ta~~~~----gp~----ii~~I~~~L~~~l~~~g~~si~e~iG~~~ 320 (420)
T PRK08318 281 VCTAAMQY----GFR----IVEDMISGLSHYMDEKGFASLEDMVGLAV 320 (420)
T ss_pred eeeeeccC----Cch----hHHHHHHHHHHHHHHcCcchHHHHhcccc
Confidence 99998863 553 67789999999999999999999987543
No 47
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.84 E-value=3.2e-19 Score=182.09 Aligned_cols=136 Identities=21% Similarity=0.338 Sum_probs=109.9
Q ss_pred CCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCcc----CCCC--Cc---chHHHHHHHHHHcCCCc
Q 017781 212 LSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGAR----QLDY--VP---ATIMALEEVVKATQGRI 277 (366)
Q Consensus 212 ~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~----~~~~--~~---~~~~~l~~i~~~~~~~i 277 (366)
..|+.|+|+|+.+ +.+|+.+++.+.++ .++|||+|.|++|.|. +... +. +++..++++++.. ++
T Consensus 275 ~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~--~v 352 (505)
T PLN02274 275 YQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH--GV 352 (505)
T ss_pred HHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc--CC
Confidence 3678999999999 58888999999998 9999999999988763 2222 22 2555677776655 79
Q ss_pred eEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH--------------------Hhhh-----cC--------------HH
Q 017781 278 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA-----EG--------------EK 318 (366)
Q Consensus 278 ~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~l~~-----~G--------------~~ 318 (366)
|||++|||+++.|++|||++||++||+|+.|.- +++. .| ++
T Consensus 353 pVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~~~v~e 432 (505)
T PLN02274 353 PVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAKLKIAQ 432 (505)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCcccccCC
Confidence 999999999999999999999999999998842 1110 00 12
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 319 ----------GVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 319 ----------gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
.|.+++..|...|+..|.++|+.++.||+..
T Consensus 433 gv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 433 GVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred ceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 2789999999999999999999999999865
No 48
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.83 E-value=3.1e-19 Score=172.66 Aligned_cols=233 Identities=19% Similarity=0.221 Sum_probs=162.2
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCC-ceecCCCCCC------CHHHHhccCC--CceEEEeeecCCHHHHHHHHH
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~aa~~~G~-~~~vs~~~~~------~~e~i~~~~~--~~~~~Qly~~~d~~~~~~~l~ 143 (366)
|+++|||.+.+ +.++++.++++|. .++.++|.+. ...+.....+ .|..+||+ ..|++.+.+..+
T Consensus 2 ~~~lAPM~g~T------d~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDWT------DRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLG-GSDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEc-cCCHHHHHHHHH
Confidence 79999998876 8899999999998 6888887432 1122222222 68999998 689999999999
Q ss_pred HHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHh
Q 017781 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (366)
Q Consensus 144 ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~ 223 (366)
.+++.|++.|.||++||..- . . + .+.+..++ .++++..+.++.+++.
T Consensus 75 ~~~~~g~d~IDlN~GCP~~~-----v----------~-~---------------~g~Gs~Ll--~~p~~~~~iv~av~~~ 121 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSDR-----V----------Q-N---------------GNFGACLM--GNADLVADCVKAMQEA 121 (318)
T ss_pred HHHhCCCCEEEEECCCCHHH-----h----------C-C---------------CCeehHhh--cCHHHHHHHHHHHHHH
Confidence 99999999999999999530 0 0 0 01122233 2566677889999999
Q ss_pred cCCCEEEEeccCH------HH--------HHcCCcEEEEcCCCc-cCCC-------CCcchHHHHHHHHHHcCCCceEEE
Q 017781 224 TKLPILVKGVLTA------ED--------VQAGAAGIIVSNHGA-RQLD-------YVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 224 ~~~pv~vK~v~~~------~d--------~~aGad~I~vs~~gg-~~~~-------~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
+++||.||..... ++ .++|+|.|+|+++.. .+.. ..+..|+.+.++++.+. ++|||+
T Consensus 122 ~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~-~ipVi~ 200 (318)
T TIGR00742 122 VNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP-HLTIEI 200 (318)
T ss_pred hCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCC-CCcEEE
Confidence 9999999987522 22 789999999976532 1111 23346788888887663 699999
Q ss_pred ecCCCCHHHHHHHHHhCcCEEEecHHH-----HHHhh----hcC---HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 282 DGGVRRGTDVFKALALGASGIFIGRPV-----VYSLA----AEG---EKGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 282 ~GGI~~~~dv~kalalGAd~V~igr~~-----l~~l~----~~G---~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
+|||++.+|+.+++. |||+|||||++ +|.-. .+| .....+.++.+.++++..... ...+.++++.
T Consensus 201 NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~rk~ 277 (318)
T TIGR00742 201 NGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ--GLSLNHITRH 277 (318)
T ss_pred ECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHH
Confidence 999999999999996 99999999965 44311 112 112344555666666554332 2345555554
No 49
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.83 E-value=3.2e-19 Score=182.22 Aligned_cols=137 Identities=26% Similarity=0.407 Sum_probs=113.1
Q ss_pred CHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcC-----CCccCC-CCCcchHHHHHHHHHHcC-CCceEE
Q 017781 213 SWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSN-----HGARQL-DYVPATIMALEEVVKATQ-GRIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~-----~gg~~~-~~~~~~~~~l~~i~~~~~-~~i~vi 280 (366)
.++.++++|+.+ ++||+++.+.+.++ .++|+|+|.++. ++++.. .++.|+++++.+++++.. ..+|||
T Consensus 256 vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~vi 335 (486)
T PRK05567 256 VLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVI 335 (486)
T ss_pred HHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEE
Confidence 346799999998 89999999999987 999999999843 333443 568899999999988763 369999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHHHHH--------------------Hhhh------------------------cC
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA------------------------EG 316 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~l~~------------------------~G 316 (366)
+||||+++.|++|||++|||+||+|++|.- +++. .|
T Consensus 336 adGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~~~~g 415 (486)
T PRK05567 336 ADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLVPEG 415 (486)
T ss_pred EcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccCCCc
Confidence 999999999999999999999999998721 1111 01
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 317 E-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 317 ~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
- ..+.+++..+...|+..|.++|..++.||+..
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 455 (486)
T PRK05567 416 IEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREK 455 (486)
T ss_pred eEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhc
Confidence 0 12889999999999999999999999999844
No 50
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.83 E-value=7.1e-19 Score=172.33 Aligned_cols=228 Identities=15% Similarity=0.177 Sum_probs=152.8
Q ss_pred CCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCCC----------------------
Q 017781 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS---------------------- 112 (366)
Q Consensus 56 ~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~~---------------------- 112 (366)
..+++++|+++|.++.+||++|. |. +++....+.+.+.|.++++ .|....
T Consensus 44 ~~~~~L~~~~~Gl~l~nPi~~As-G~------~~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~ 116 (344)
T PRK05286 44 YTDPRLPVTVMGLTFPNPVGLAA-GF------DKNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINR 116 (344)
T ss_pred CCCCCCceEECCEECCCCCEECC-CC------CCChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccC
Confidence 45788999999999999999876 32 2355667778899988875 332211
Q ss_pred ------CHH----HHhcc-CCCceEEEeeecC------CHHHHHHHHHHHHHcCCCEEEEecCCCCCc-chhHHHhhhcC
Q 017781 113 ------SVE----EVAST-GPGIRFFQLYVYK------DRNVVAQLVRRAERAGFKAIALTVDTPRLG-RREADIKNRFT 174 (366)
Q Consensus 113 ------~~e----~i~~~-~~~~~~~Qly~~~------d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g-~r~~d~~~~~~ 174 (366)
.++ ++.+. ...|.+.++.... ..+...++++++.+ +++++.+++.||... .|.
T Consensus 117 ~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~-------- 187 (344)
T PRK05286 117 MGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRD-------- 187 (344)
T ss_pred CCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCccc--------
Confidence 011 11111 1124555553211 23334444444433 467777777776431 000
Q ss_pred CCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcC-----CCEEEEeccCH--HH--------H
Q 017781 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-----LPILVKGVLTA--ED--------V 239 (366)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~-----~pv~vK~v~~~--~d--------~ 239 (366)
..++....+.++++|+.++ +||++|...+. ++ .
T Consensus 188 --------------------------------~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~ 235 (344)
T PRK05286 188 --------------------------------LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLAL 235 (344)
T ss_pred --------------------------------ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 0123334467899999886 99999987532 22 7
Q ss_pred HcCCcEEEEcCCCc-------------cCCCCCcc----hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEE
Q 017781 240 QAGAAGIIVSNHGA-------------RQLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 302 (366)
Q Consensus 240 ~aGad~I~vs~~gg-------------~~~~~~~~----~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V 302 (366)
++|+|+|+++|.-- ....+|++ .++.+.++++.+++++|||++|||++++|+.++|.+|||+|
T Consensus 236 ~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V 315 (344)
T PRK05286 236 EHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLV 315 (344)
T ss_pred HhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHH
Confidence 88999999998531 01112332 56678888888766799999999999999999999999999
Q ss_pred EecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcC
Q 017781 303 FIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 339 (366)
Q Consensus 303 ~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G 339 (366)
++||++++. |+. ++..+++||+.+|...|
T Consensus 316 ~v~~~~~~~----gP~----~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 316 QIYSGLIYE----GPG----LVKEIVRGLARLLRRDG 344 (344)
T ss_pred HHHHHHHHh----Cch----HHHHHHHHHHHHHHhcC
Confidence 999999873 553 66788999999998765
No 51
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.79 E-value=7.7e-18 Score=161.68 Aligned_cols=219 Identities=17% Similarity=0.129 Sum_probs=150.6
Q ss_pred eeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCC--------------------------CCH-
Q 017781 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST--------------------------SSV- 114 (366)
Q Consensus 63 t~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~--------------------------~~~- 114 (366)
++++|++|++||++|+=. .+.+.+..+.+.+.|+++++ .|... ..+
T Consensus 1 ~~~~Gl~l~nPi~~Asg~------~~~~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~ 74 (294)
T cd04741 1 VTPPGLTISPPLMNAAGP------WCTTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLD 74 (294)
T ss_pred CccCCeeCCCCCEECCCC------CCCCHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHH
Confidence 478999999999999832 23466677777778988875 22211 011
Q ss_pred ---HHHhcc------CCCceEEEeeecCCHHHHHHHHHHHHHc---CCCEEEEecCCCCCcchhHHHhhhcCCCCccccc
Q 017781 115 ---EEVAST------GPGIRFFQLYVYKDRNVVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (366)
Q Consensus 115 ---e~i~~~------~~~~~~~Qly~~~d~~~~~~~l~ra~~~---G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~ 182 (366)
+++.+. ...|...|+... .+...+.++++++. |++++.+|+.||.....
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~----------------- 135 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGK----------------- 135 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECCCC--HHHHHHHHHHHHhhccccccEEEEECCCCCCCCc-----------------
Confidence 222221 125678888643 66667777777765 69999999999963100
Q ss_pred cccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHH--H--------HHc--CCcEEEEcC
Q 017781 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE--D--------VQA--GAAGIIVSN 250 (366)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~--d--------~~a--Gad~I~vs~ 250 (366)
.. + ..+++...+.++++|+.+++||++|.....+ + .++ |+|+|++.|
T Consensus 136 ------------------~~-~--~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~N 194 (294)
T cd04741 136 ------------------PP-P--AYDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATN 194 (294)
T ss_pred ------------------cc-c--cCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEc
Confidence 00 0 0134455678999999999999999885332 2 456 999999876
Q ss_pred CCc---------cC-------CCCCcc-------hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 251 HGA---------RQ-------LDYVPA-------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 251 ~gg---------~~-------~~~~~~-------~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
.-+ +. ..+|.+ .+..+.++++.+++++|||++|||.+++|++++|.+|||+||+||.
T Consensus 195 t~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta 274 (294)
T cd04741 195 TLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTA 274 (294)
T ss_pred cCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchh
Confidence 431 11 112222 3455677777775569999999999999999999999999999999
Q ss_pred HHHHhhhcCHHHHHHHHHHHHHHHHHHH
Q 017781 308 VVYSLAAEGEKGVRRVLEMLREEFELAM 335 (366)
Q Consensus 308 ~l~~l~~~G~~gv~~~~~~l~~el~~~m 335 (366)
+++. |+. +++.+.+||+.+|
T Consensus 275 ~~~~----gp~----~~~~i~~~L~~~~ 294 (294)
T cd04741 275 LGKE----GPK----VFARIEKELEDIW 294 (294)
T ss_pred hhhc----Cch----HHHHHHHHHHhhC
Confidence 9862 543 5667788888764
No 52
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.79 E-value=8.9e-19 Score=169.23 Aligned_cols=236 Identities=24% Similarity=0.328 Sum_probs=153.5
Q ss_pred EecccccccccCChhhHHHHHHHHHcCCc-eecCCCCCC-----CHH---HHhccCC--CceEEEeeecCCHHHHHHHHH
Q 017781 75 MIAPTAMQKMAHPEGEYATARAASAAGTI-MTLSSWSTS-----SVE---EVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (366)
Q Consensus 75 ~iApm~~~~l~~~~~e~~la~aa~~~G~~-~~vs~~~~~-----~~e---~i~~~~~--~~~~~Qly~~~d~~~~~~~l~ 143 (366)
++|||.+.+ +.+++..+.++|.. .+.+++.+. ..+ +.....+ .|..+||. .+|++.+.+.++
T Consensus 1 ~LAPM~g~t------d~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~-g~~~~~~~~aa~ 73 (309)
T PF01207_consen 1 ILAPMAGVT------DLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLF-GNDPEDLAEAAE 73 (309)
T ss_dssp -E---TTTS------SHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE--S-HHHHHHHHH
T ss_pred CccCCCCCc------hHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEe-eccHHHHHHHHH
Confidence 589998765 88999999999999 888887431 111 1111222 58999998 689999999998
Q ss_pred HHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHh
Q 017781 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (366)
Q Consensus 144 ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~ 223 (366)
.+.+.|++.|.||++||.. . ++ + .+.+..++ .+++...+.++.+++.
T Consensus 74 ~~~~~~~~~IDlN~GCP~~-----~----------v~-~---------------~g~Ga~Ll--~~p~~~~~iv~~~~~~ 120 (309)
T PF01207_consen 74 IVAELGFDGIDLNMGCPAP-----K----------VT-K---------------GGAGAALL--KDPDLLAEIVKAVRKA 120 (309)
T ss_dssp HHCCTT-SEEEEEE---SH-----H----------HH-H---------------CT-GGGGG--C-HHHHHHHHHHHHHH
T ss_pred hhhccCCcEEeccCCCCHH-----H----------Hh-c---------------CCcChhhh--cChHHhhHHHHhhhcc
Confidence 8888999999999999963 0 00 0 01222333 2566667789999999
Q ss_pred cCCCEEEEeccCHH----H--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHH
Q 017781 224 TKLPILVKGVLTAE----D--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 291 (366)
Q Consensus 224 ~~~pv~vK~v~~~~----d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv 291 (366)
+++||.+|.....+ + .++|+++|+|+++...|...+++.|+.+.++++.+ ++|||++|||.+.+|+
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d~ 198 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPEDA 198 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHHH
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHHH
Confidence 99999999875332 1 89999999999887777778899999999999988 6999999999999999
Q ss_pred HHHHHh-CcCEEEecHH-----HHHHh---hhcCH----HHHHHHHHHHHHHHHHHHHHcCC-CChhhhccccee
Q 017781 292 FKALAL-GASGIFIGRP-----VVYSL---AAEGE----KGVRRVLEMLREEFELAMALSGC-RSLKEITRDHIV 352 (366)
Q Consensus 292 ~kalal-GAd~V~igr~-----~l~~l---~~~G~----~gv~~~~~~l~~el~~~m~~~G~-~~l~el~~~~l~ 352 (366)
.+.+.. |+|+|||||. ++|.. ...|. .-+.+.++.+.++++......|. ..+..+++...+
T Consensus 199 ~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 273 (309)
T PF01207_consen 199 ERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKW 273 (309)
T ss_dssp HHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCC
T ss_pred HHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 999984 9999999994 45541 11111 11456677788888877777763 356666665443
No 53
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.78 E-value=1.1e-17 Score=162.84 Aligned_cols=233 Identities=19% Similarity=0.196 Sum_probs=150.7
Q ss_pred chhhHHHhHhcccceeeecccc-CCCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCC
Q 017781 32 DQWTLQENRNAFSRILFRPRIL-IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSW 109 (366)
Q Consensus 32 ~~~t~~~N~~~f~~i~l~pr~l-~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~ 109 (366)
-|.+++-....++-+...|-.. +...+.|++|+++|.++.+||++|. |. +++....+.+.+.|+++++ .|.
T Consensus 9 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~As-G~------~~~~~~~~~~~~~G~Gavv~kti 81 (327)
T cd04738 9 PETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAA-GF------DKNAEAIDALLALGFGFVEVGTV 81 (327)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCc-CC------CCCHHHHHHHHHCCCcEEEEecc
Confidence 3455555566666555555332 4567899999999999999998876 32 2344556666688888775 222
Q ss_pred CCC----------------------------C----HHHHhccC--CCceEEEeeecCC------HHHHHHHHHHHHHcC
Q 017781 110 STS----------------------------S----VEEVASTG--PGIRFFQLYVYKD------RNVVAQLVRRAERAG 149 (366)
Q Consensus 110 ~~~----------------------------~----~e~i~~~~--~~~~~~Qly~~~d------~~~~~~~l~ra~~~G 149 (366)
+.. . ++++.+.. ..|.++|+..... .+...++++++.. .
T Consensus 82 t~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~-~ 160 (327)
T cd04738 82 TPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP-Y 160 (327)
T ss_pred CCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHh-h
Confidence 110 0 12222211 2456777753221 2333334444433 3
Q ss_pred CCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcC----
Q 017781 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK---- 225 (366)
Q Consensus 150 ~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~---- 225 (366)
++++.+++.||..... + . ..++....+.++++|+.++
T Consensus 161 ad~ielN~scP~~~g~----------------~--------------------~---~~~~~~~~~iv~av~~~~~~~~~ 201 (327)
T cd04738 161 ADYLVVNVSSPNTPGL----------------R--------------------D---LQGKEALRELLTAVKEERNKLGK 201 (327)
T ss_pred CCEEEEECCCCCCCcc----------------c--------------------c---ccCHHHHHHHHHHHHHHHhhccc
Confidence 7888888888753100 0 0 0133334467899998875
Q ss_pred -CCEEEEeccCH--HH--------HHcCCcEEEEcCCCcc-------------CCCCCc----chHHHHHHHHHHcCCCc
Q 017781 226 -LPILVKGVLTA--ED--------VQAGAAGIIVSNHGAR-------------QLDYVP----ATIMALEEVVKATQGRI 277 (366)
Q Consensus 226 -~pv~vK~v~~~--~d--------~~aGad~I~vs~~gg~-------------~~~~~~----~~~~~l~~i~~~~~~~i 277 (366)
+||++|..... ++ .++|+|+|+++|.... +..+|+ .+++.+.++++.+++++
T Consensus 202 ~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~i 281 (327)
T cd04738 202 KVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKI 281 (327)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCC
Confidence 99999987533 23 8899999999884210 001222 34678888888886679
Q ss_pred eEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 278 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 278 ~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
|||++|||++++|+.+++.+|||+||+||++++.
T Consensus 282 pIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~ 315 (327)
T cd04738 282 PIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYE 315 (327)
T ss_pred cEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhh
Confidence 9999999999999999999999999999999873
No 54
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.78 E-value=6.5e-18 Score=164.78 Aligned_cols=238 Identities=21% Similarity=0.215 Sum_probs=164.3
Q ss_pred cccCCceEecccccccccCChhhHHHHHHHHHcCC-ceecCCCCCC------CHHHHhccCC--CceEEEeeecCCHHHH
Q 017781 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVV 138 (366)
Q Consensus 68 ~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~-~~~vs~~~~~------~~e~i~~~~~--~~~~~Qly~~~d~~~~ 138 (366)
.....|+++|||.+.+ +.++++.|+++|. .++.++|.+. ...+.....+ .|..+||+ ..|++..
T Consensus 7 ~~~~~~~~lAPM~g~t------d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~ 79 (333)
T PRK11815 7 KLPSRRFSVAPMMDWT------DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG-GSDPADL 79 (333)
T ss_pred cCCCCCEEEeCCCCCc------CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe-CCCHHHH
Confidence 3456799999998865 8899999999997 6777777431 1122222222 68999998 6889999
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHH
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (366)
.+.+++++++|+++|.||++||..-.|. . +.+..+. .++.+..+.++
T Consensus 80 ~~aA~~~~~~g~d~IdlN~gCP~~~v~~-----------------------------~--~~Gs~L~--~~p~~~~eiv~ 126 (333)
T PRK11815 80 AEAAKLAEDWGYDEINLNVGCPSDRVQN-----------------------------G--RFGACLM--AEPELVADCVK 126 (333)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHccC-----------------------------C--CeeeHHh--cCHHHHHHHHH
Confidence 9999999999999999999998531110 0 0111122 25667778899
Q ss_pred HHHHhcCCCEEEEeccC------HHH--------HHcCCcEEEEcCCCc-cCC-------CCCcchHHHHHHHHHHcCCC
Q 017781 219 WLQTITKLPILVKGVLT------AED--------VQAGAAGIIVSNHGA-RQL-------DYVPATIMALEEVVKATQGR 276 (366)
Q Consensus 219 ~lr~~~~~pv~vK~v~~------~~d--------~~aGad~I~vs~~gg-~~~-------~~~~~~~~~l~~i~~~~~~~ 276 (366)
.+++.+++||.+|.... .++ .++|+|+|+|++..+ .+. ...+..++.+.++++.+. +
T Consensus 127 avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~ 205 (333)
T PRK11815 127 AMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP-H 205 (333)
T ss_pred HHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCC-C
Confidence 99999999999997432 122 789999999986432 111 113346788888887642 6
Q ss_pred ceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH-----hh---hcCH----HHHHHHHHHHHHHHHHHHHHcCCCChh
Q 017781 277 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS-----LA---AEGE----KGVRRVLEMLREEFELAMALSGCRSLK 344 (366)
Q Consensus 277 i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~-----l~---~~G~----~gv~~~~~~l~~el~~~m~~~G~~~l~ 344 (366)
+|||++|||++.+|+.++++ |||+|||||+++.. -. ..|. ....++++.+.++++..... |. .+.
T Consensus 206 iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 282 (333)
T PRK11815 206 LTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQ-GG-RLN 282 (333)
T ss_pred CeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc-Cc-hHH
Confidence 99999999999999999997 89999999976532 11 1122 12345566666666665552 33 355
Q ss_pred hhccc
Q 017781 345 EITRD 349 (366)
Q Consensus 345 el~~~ 349 (366)
.+++.
T Consensus 283 ~~rk~ 287 (333)
T PRK11815 283 HITRH 287 (333)
T ss_pred HHHHH
Confidence 55544
No 55
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.76 E-value=5.1e-17 Score=164.89 Aligned_cols=137 Identities=28% Similarity=0.369 Sum_probs=110.9
Q ss_pred CHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCcc----C--CCCCcchHHHHHHHHHHcCC-CceEE
Q 017781 213 SWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGAR----Q--LDYVPATIMALEEVVKATQG-RIPVF 280 (366)
Q Consensus 213 ~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~----~--~~~~~~~~~~l~~i~~~~~~-~i~vi 280 (366)
.++.|+++|+.+ +.+|+...+.|.+. .++|||+|.|.-..|. + ...+.|.++++.+++++... .+|||
T Consensus 255 ~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~vi 334 (479)
T PRK07807 255 MLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVW 334 (479)
T ss_pred HHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEE
Confidence 456799999998 68888889999887 9999999998755442 1 23467899999999886533 79999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHHHHH---------------------------Hhh-----------------hcC
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRPVVY---------------------------SLA-----------------AEG 316 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~~l~---------------------------~l~-----------------~~G 316 (366)
++|||+++.|++|||++||++||+|+.|.- ++. ..|
T Consensus 335 a~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~~~eG 414 (479)
T PRK07807 335 ADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRARKALFEEG 414 (479)
T ss_pred ecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcccCCCCCC
Confidence 999999999999999999999999998831 111 011
Q ss_pred HHH-----------HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 317 EKG-----------VRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 317 ~~g-----------v~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
-++ +..+++.|...|+..|.++|..++.||+..
T Consensus 415 v~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~ 458 (479)
T PRK07807 415 ISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHER 458 (479)
T ss_pred ccceeeeccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhC
Confidence 111 677899999999999999999999999866
No 56
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=99.75 E-value=5.7e-17 Score=161.62 Aligned_cols=254 Identities=22% Similarity=0.228 Sum_probs=171.8
Q ss_pred cccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHH
Q 017781 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (366)
Q Consensus 68 ~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~ 147 (366)
..+..||.++.|++++++ ++...++|+++.+.|..+-.++..- ..+.. +. ....+.|+-. .-..++.+.+.
T Consensus 163 ~~i~~~~~~~aMS~GAlS-~eA~~alA~a~~~~G~~sntGEGGe-~~~~~-~~-~~s~I~QvaS-GRFGV~~~yL~---- 233 (485)
T COG0069 163 LELKKRFVTGAMSFGALS-KEAHEALARAMNRIGTKSNTGEGGE-DPERY-ED-GRSAIKQVAS-GRFGVTPEYLA---- 233 (485)
T ss_pred ceeeecccccccCCcccc-HHHHHHHHHHHHHhcCcccCCCCCC-CHHHh-cc-ccceEEEecc-ccCccCHHHhC----
Confidence 567789999999998876 5678899999999998888877653 33433 21 2346778642 22333333332
Q ss_pred cCCCEEEEecCC---CCCcchhHHHhhhcCCCC-ccccccccccccCCCccccch-hhHHHhhhccCCC-CCHH----HH
Q 017781 148 AGFKAIALTVDT---PRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDS-GLAAYVAGQIDRS-LSWK----DV 217 (366)
Q Consensus 148 ~G~~ai~vtvd~---p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~-~~~~----~i 217 (366)
.++++.|-+.. |..|.+ +|. +++. .+++.+.. .....+++..+.+ .+.+ .|
T Consensus 234 -~a~~ieIKiaQGAKPGeGG~---------Lpg~KV~~---------~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI 294 (485)
T COG0069 234 -NADAIEIKIAQGAKPGEGGQ---------LPGEKVTP---------EIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLI 294 (485)
T ss_pred -ccceEEEEeccCCCCCCCCC---------CCCccCCH---------HHHHhcCCCCCCCCcCCCCcccccCHHHHHHHH
Confidence 34555555542 221111 121 1110 00000000 0011222222222 2343 36
Q ss_pred HHHHHhc-CCCEEEEecc--CHHH-----HHcCCcEEEEcCCC-ccC-------CCCCcchHHHHHHHHHHc-----CCC
Q 017781 218 KWLQTIT-KLPILVKGVL--TAED-----VQAGAAGIIVSNHG-ARQ-------LDYVPATIMALEEVVKAT-----QGR 276 (366)
Q Consensus 218 ~~lr~~~-~~pv~vK~v~--~~~d-----~~aGad~I~vs~~g-g~~-------~~~~~~~~~~l~~i~~~~-----~~~ 276 (366)
..||+.. ..+|.||.+. .+++ .+++||.|+|+++. |+. .+.|.|....|+++.+.+ +++
T Consensus 295 ~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~ 374 (485)
T COG0069 295 KDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDK 374 (485)
T ss_pred HHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcce
Confidence 6777765 3679999884 3333 89999999999984 442 246777777788887764 568
Q ss_pred ceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhc-----------------------------CHHHHHHHHHHH
Q 017781 277 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEML 327 (366)
Q Consensus 277 i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~-----------------------------G~~gv~~~~~~l 327 (366)
+.|+++||++|+.||+||++||||.|.+||+.|.++.|. .++.|.+++..+
T Consensus 375 v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~ 454 (485)
T COG0069 375 VKLIADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFV 454 (485)
T ss_pred eEEEecCCccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999988652 367899999999
Q ss_pred HHHHHHHHHHcCCCChhhhccc
Q 017781 328 REEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 328 ~~el~~~m~~~G~~~l~el~~~ 349 (366)
.+|++++|+.+|.+++++|.++
T Consensus 455 a~e~rella~lG~~~l~el~g~ 476 (485)
T COG0069 455 AEELRELLAALGKRSLSELIGR 476 (485)
T ss_pred HHHHHHHHHHhCCCCHHHHhcc
Confidence 9999999999999999999966
No 57
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.75 E-value=1e-16 Score=153.44 Aligned_cols=203 Identities=23% Similarity=0.300 Sum_probs=145.1
Q ss_pred eeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceec-CCCCCC-----------------------------
Q 017781 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS----------------------------- 112 (366)
Q Consensus 63 t~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~~~----------------------------- 112 (366)
|+++|+++.+||++|+-... .+....+.+.+.|+++++ .|....
T Consensus 1 ~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~ 74 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLL------KTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNS 74 (289)
T ss_pred CeECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeec
Confidence 57899999999999984321 366788888888888775 222110
Q ss_pred ------CHH----HHhc---c-CCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCc
Q 017781 113 ------SVE----EVAS---T-GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF 178 (366)
Q Consensus 113 ------~~e----~i~~---~-~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~ 178 (366)
..+ ++.+ . ...+...|+. ..+.+.+.+.+++++++|++++.+|+.||.....
T Consensus 75 ~g~~~~g~~~~~~~i~~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~------------- 140 (289)
T cd02810 75 FGLPNLGLDVWLQDIAKAKKEFPGQPLIASVG-GSSKEDYVELARKIERAGAKALELNLSCPNVGGG------------- 140 (289)
T ss_pred CCCCCcCHHHHHHHHHHHHhccCCCeEEEEec-cCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC-------------
Confidence 111 2221 1 1256778886 4577788888999999999999999999963110
Q ss_pred cccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEecc--CHHH--------HHcCCcEEEE
Q 017781 179 LTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL--TAED--------VQAGAAGIIV 248 (366)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~--~~~d--------~~aGad~I~v 248 (366)
+. + ..++....+.++++|+.+++||++|... +.++ .++|+|+|++
T Consensus 141 ---~~--------------------~--~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~ 195 (289)
T cd02810 141 ---RQ--------------------L--GQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTA 195 (289)
T ss_pred ---cc--------------------c--ccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 00 0 0133445677999999889999999764 3323 8899999999
Q ss_pred cCCC-ccC------------CC---CCc----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 249 SNHG-ARQ------------LD---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 249 s~~g-g~~------------~~---~~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
+|+. +.. .. .++ ..++.+.++++.++.++|||++|||++++|+.+++++|||+|++||++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~ 275 (289)
T cd02810 196 INTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATAL 275 (289)
T ss_pred EcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHH
Confidence 8752 211 01 111 246678888887755799999999999999999999999999999999
Q ss_pred HH
Q 017781 309 VY 310 (366)
Q Consensus 309 l~ 310 (366)
+.
T Consensus 276 ~~ 277 (289)
T cd02810 276 MW 277 (289)
T ss_pred Hh
Confidence 86
No 58
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.74 E-value=1.6e-16 Score=174.45 Aligned_cols=249 Identities=21% Similarity=0.187 Sum_probs=168.0
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCC
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFK 151 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ 151 (366)
.+|.++.|++++++ ++...++|++|.+.|+....++.. ...++... .....++|+-. .-...+.+.+. .++
T Consensus 859 ~rf~~~aMSfGalS-~eA~~aLA~a~~~~G~~sntGEGG-~~p~~~~~-~~~~~i~QiaS-GrFGv~~e~l~-----~a~ 929 (1485)
T PRK11750 859 KRFDSAAMSIGALS-PEAHEALAIAMNRLGGRSNSGEGG-EDPARYGT-EKVSKIKQVAS-GRFGVTPAYLV-----NAE 929 (1485)
T ss_pred cccccccCCCCccC-HHHHHHHHHHHHHhCCceecCCCC-CCHHHHhc-ccCCeEEEccC-CcCCCCHHHhc-----cCC
Confidence 45899999998876 567889999999999998888765 44455422 22456788743 22233333333 356
Q ss_pred EEEEecCC---CCCcchhHHHhhhcCCCC-ccccccccccccCCCcccc-chhhHHHhhhccCCCC-CHHH----HHHHH
Q 017781 152 AIALTVDT---PRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEAN-DSGLAAYVAGQIDRSL-SWKD----VKWLQ 221 (366)
Q Consensus 152 ai~vtvd~---p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~-~~~~----i~~lr 221 (366)
.|-|.+.. |..|. .+|. +++. . +++.+ .......+++..+++. +.++ |.++|
T Consensus 930 ~ieIKi~QGAKPG~GG---------~Lpg~KV~~-~--------IA~~R~~~~G~~liSP~phhdiySieDL~qlI~~Lk 991 (1485)
T PRK11750 930 VLQIKVAQGAKPGEGG---------QLPGDKVNP-L--------IARLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLK 991 (1485)
T ss_pred EEEEEecCCCCCCCCC---------cCccccCCH-H--------HHHHcCCCCCCCCCCCCCCccCCCHHHHHHHHHHHH
Confidence 77776653 21111 1221 1110 0 00000 0001112233233333 4443 66777
Q ss_pred Hhc-CCCEEEEecc-----CHHH--HHcCCcEEEEcCCCc-cC-------CCCCcchHHHHHHHHHHc-----CCCceEE
Q 017781 222 TIT-KLPILVKGVL-----TAED--VQAGAAGIIVSNHGA-RQ-------LDYVPATIMALEEVVKAT-----QGRIPVF 280 (366)
Q Consensus 222 ~~~-~~pv~vK~v~-----~~~d--~~aGad~I~vs~~gg-~~-------~~~~~~~~~~l~~i~~~~-----~~~i~vi 280 (366)
+.. +.||.||.+. +... .++|+|.|++++|.| +. .+.|.|....|.++.+.+ ++++.|+
T Consensus 992 ~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~ 1071 (1485)
T PRK11750 992 QVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQ 1071 (1485)
T ss_pred HhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEE
Confidence 776 5799999873 2222 789999999999854 32 134666556687777664 4689999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhc----------------------------CHHHHHHHHHHHHHHHH
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE----------------------------GEKGVRRVLEMLREEFE 332 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~----------------------------G~~gv~~~~~~l~~el~ 332 (366)
++||++|+.|++||++||||.|.+||++|.++.|. .++.|.+++..+.+|++
T Consensus 1072 a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~~~~~el~ 1151 (1485)
T PRK11750 1072 VDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETR 1151 (1485)
T ss_pred EcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988762 14679999999999999
Q ss_pred HHHHHcCCCChhhhc
Q 017781 333 LAMALSGCRSLKEIT 347 (366)
Q Consensus 333 ~~m~~~G~~~l~el~ 347 (366)
..|..+|.++++|+.
T Consensus 1152 ~~la~lG~~s~~elv 1166 (1485)
T PRK11750 1152 EWMAQLGVRSLEDLI 1166 (1485)
T ss_pred HHHHHhCCCCHHHhc
Confidence 999999999999993
No 59
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.73 E-value=1.6e-16 Score=146.81 Aligned_cols=196 Identities=21% Similarity=0.249 Sum_probs=144.6
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCC------CHH--HHhccC--CCceEEEeeecCCHHHHHHHH
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------SVE--EVASTG--PGIRFFQLYVYKDRNVVAQLV 142 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~------~~e--~i~~~~--~~~~~~Qly~~~d~~~~~~~l 142 (366)
|+++|||.+.+ +.+++..+.++|.-.+.+++... .-. ...... +.|..+||. ..+++...+..
T Consensus 1 ~~~~aPm~~~~------~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~-g~~~~~~~~aa 73 (231)
T cd02801 1 KLILAPMVGVT------DLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLG-GSDPETLAEAA 73 (231)
T ss_pred CeEeCCCCCCc------CHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEc-CCCHHHHHHHH
Confidence 68999997654 88999999999977777766321 111 111112 267889997 56788888999
Q ss_pred HHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHH
Q 017781 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (366)
Q Consensus 143 ~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~ 222 (366)
++++++|++++.|++.||..-.|. .++ +..+. .++.+..+.++++|+
T Consensus 74 ~~~~~aG~d~ieln~g~p~~~~~~----~~~---------------------------G~~l~--~~~~~~~eii~~v~~ 120 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSPKVTK----GGA---------------------------GAALL--KDPELVAEIVRAVRE 120 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHHHHhC----CCe---------------------------eehhc--CCHHHHHHHHHHHHH
Confidence 999999999999999998531110 000 00011 244556788999999
Q ss_pred hcCCCEEEEeccCH--H-H--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHH
Q 017781 223 ITKLPILVKGVLTA--E-D--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 291 (366)
Q Consensus 223 ~~~~pv~vK~v~~~--~-d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv 291 (366)
.++.|+.+|...++ + + .++|+|+|.+++....+...++..++.+..+++.+ ++||+++|||++.+|+
T Consensus 121 ~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 121 AVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDA 198 (231)
T ss_pred hcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHH
Confidence 88899999976433 1 2 78899999997654323234456788888888766 7999999999999999
Q ss_pred HHHHHh-CcCEEEecHHHHH
Q 017781 292 FKALAL-GASGIFIGRPVVY 310 (366)
Q Consensus 292 ~kalal-GAd~V~igr~~l~ 310 (366)
.+++.. |||+|++||+++.
T Consensus 199 ~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 199 LRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HHHHHhcCCCEEEEcHHhHh
Confidence 999998 8999999999875
No 60
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.72 E-value=9.1e-17 Score=154.37 Aligned_cols=115 Identities=25% Similarity=0.361 Sum_probs=84.0
Q ss_pred CHHHHHHHHHhcCCCEEEEeccC---HHH-------HHcCCcEEEEcCCCcc----------CCC-------CCc----c
Q 017781 213 SWKDVKWLQTITKLPILVKGVLT---AED-------VQAGAAGIIVSNHGAR----------QLD-------YVP----A 261 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~---~~d-------~~aGad~I~vs~~gg~----------~~~-------~~~----~ 261 (366)
..+.++++++..++||++|...+ ... .+.|+|+|++.|.-+. ... +|+ .
T Consensus 150 ~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~ 229 (295)
T PF01180_consen 150 VAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPI 229 (295)
T ss_dssp HHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHH
T ss_pred HHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhH
Confidence 34567888888899999998863 221 5789999998775321 011 122 2
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHH
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 335 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m 335 (366)
++..+.++++.++.++|||++|||.+++|++++|.+||++|++++.+++. |+. +++.+.+||+.+|
T Consensus 230 aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~----Gp~----~~~~i~~~L~~~l 295 (295)
T PF01180_consen 230 ALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYR----GPG----VIRRINRELEEWL 295 (295)
T ss_dssp HHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHH----GTT----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhc----CcH----HHHHHHHHHHhhC
Confidence 45677888888866799999999999999999999999999999999874 553 6678888888877
No 61
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.70 E-value=8.8e-16 Score=149.80 Aligned_cols=100 Identities=23% Similarity=0.288 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHhcC-------CCEEEEeccCHH--H--------HHcCCcEEEEcCCCc-c------------CCCCCcc
Q 017781 212 LSWKDVKWLQTITK-------LPILVKGVLTAE--D--------VQAGAAGIIVSNHGA-R------------QLDYVPA 261 (366)
Q Consensus 212 ~~~~~i~~lr~~~~-------~pv~vK~v~~~~--d--------~~aGad~I~vs~~gg-~------------~~~~~~~ 261 (366)
...+.++++++.++ +||++|...+.. + .++|+|+|++.|+-- + ..-+|++
T Consensus 190 ~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~ 269 (335)
T TIGR01036 190 ELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKP 269 (335)
T ss_pred HHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHH
Confidence 34456788887765 999999885431 2 889999999988531 0 0011222
Q ss_pred ----hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 262 ----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 262 ----~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.+..+.++++.+++++|||+.|||.+++|+.++|.+||++|++||++++.
T Consensus 270 i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~ 323 (335)
T TIGR01036 270 LQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYW 323 (335)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHh
Confidence 34566677777766899999999999999999999999999999999873
No 62
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.70 E-value=4.1e-16 Score=144.80 Aligned_cols=184 Identities=16% Similarity=0.149 Sum_probs=129.3
Q ss_pred ceEecccccccccCChhhHHHHHH-HHHcCCceecCCCCC----------------------CCHHHHh------ccCCC
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARA-ASAAGTIMTLSSWST----------------------SSVEEVA------STGPG 123 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~a-a~~~G~~~~vs~~~~----------------------~~~e~i~------~~~~~ 123 (366)
|+++|||++.+ +.+++++ +..+|+. +++..+. .+.+.+. +..+.
T Consensus 1 ~~~lApMag~t------d~~f~~~~~~~~g~~-~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~ 73 (233)
T cd02911 1 PVALASMAGIT------DGDFCRKRADHAGLV-FLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNV 73 (233)
T ss_pred CceeeecCCCc------CHHHHHhhCccCCEE-EEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCC
Confidence 89999998865 6788884 5555554 4433221 1222221 11235
Q ss_pred ceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHH
Q 017781 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (366)
Q Consensus 124 ~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (366)
+..+|++ ..+++.+.+.++++++. ++.|.+++.||.. .+.. .+.+..
T Consensus 74 p~~vqi~-g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~-----~v~~--------------------------~g~G~~ 120 (233)
T cd02911 74 LVGVNVR-SSSLEPLLNAAALVAKN-AAILEINAHCRQP-----EMVE--------------------------AGAGEA 120 (233)
T ss_pred eEEEEec-CCCHHHHHHHHHHHhhc-CCEEEEECCCCcH-----HHhc--------------------------CCcchH
Confidence 7899998 67888888888888774 6999999999953 0000 011222
Q ss_pred hhhccCCCCCHHHHHHHHHhcCCCEEEEeccCH-HH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcC
Q 017781 204 VAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA-ED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ 274 (366)
Q Consensus 204 ~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~-~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~ 274 (366)
+. .+++...+.++.+|+ .++||.+|...+. ++ .++|+|+|.+++.. .+....++.+++++ +
T Consensus 121 Ll--~~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~----~g~~ad~~~I~~i~--~- 190 (233)
T cd02911 121 LL--KDPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMD----PGNHADLKKIRDIS--T- 190 (233)
T ss_pred Hc--CCHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCC----CCCCCcHHHHHHhc--C-
Confidence 22 256666788999998 5999999987554 22 89999998876532 11345677777775 4
Q ss_pred CCceEEEecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 275 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 275 ~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
++|||++|||.+++|+.+++..|||+||+||+
T Consensus 191 -~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 191 -ELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred -CCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 79999999999999999999999999999995
No 63
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.66 E-value=5.9e-16 Score=149.08 Aligned_cols=302 Identities=22% Similarity=0.301 Sum_probs=186.0
Q ss_pred HhcccceeeeccccC-CCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH
Q 017781 40 RNAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (366)
Q Consensus 40 ~~~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i 117 (366)
.-.|+++.|+|.... ..++|||++.|- ..+++.|++.|||.-.+ |..+|.+.+.+|...++ +-+|++|+-
T Consensus 29 ~LtynDfliLPg~idF~s~eVsL~t~ltr~itl~tPlvsSpMDTVt------es~MAiaMAl~ggIg~I--HhNctpe~Q 100 (503)
T KOG2550|consen 29 GLTYNDFLILPGFIDFASDEVSLQTKLTRNITLNTPLVSSPMDTVT------ESEMAIAMALLGGIGFI--HHNCTPEDQ 100 (503)
T ss_pred CccccceeecccccccccccceeehhhhhcccccCceeccCCcccc------hhHHHHHHHhcCCceee--ecCCCHHHH
Confidence 467999999999874 556999999874 57899999999995433 78999999999988887 346776654
Q ss_pred hcc----C--CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcc-------hhHHHhhh------------
Q 017781 118 AST----G--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGR-------READIKNR------------ 172 (366)
Q Consensus 118 ~~~----~--~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~-------r~~d~~~~------------ 172 (366)
+.. . .+.+.-+-.+........+.++.-+..|+..+-+|-|.-..++ |.-+....
T Consensus 101 A~~v~~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~~~~~~~~vmt~~ 180 (503)
T KOG2550|consen 101 ADMVRRVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLEDNSLLVSDVMTKN 180 (503)
T ss_pred HHHHHHHHHhhcccccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhcccchhhhhcccc
Confidence 321 1 1111111111111122233333333467776666643211100 11000000
Q ss_pred -cCCCCccccccc---------------------------------cccccC--CCcc---------ccc----------
Q 017781 173 -FTLPPFLTLKNF---------------------------------QGLDLG--KMDE---------AND---------- 197 (366)
Q Consensus 173 -~~~p~~~~~~~~---------------------------------~~~~~~--~~~~---------~~~---------- 197 (366)
+..|.+++++.. .++++. ...+ ++.
T Consensus 181 ~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~yPlask~~~kqll~gAaiGTre~dK~rl~ll~ 260 (503)
T KOG2550|consen 181 PVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRDYPLASKDSTKQLLCGAAIGTRDDDKERLDLLV 260 (503)
T ss_pred cccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcCCCccccCcccceeeeeccccccchhHHHHHhh
Confidence 001111111100 000000 0000 000
Q ss_pred -hhhH--HHhhhccCCCCCHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCcc----C--CCCCcchH
Q 017781 198 -SGLA--AYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGAR----Q--LDYVPATI 263 (366)
Q Consensus 198 -~~~~--~~~~~~~d~~~~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~----~--~~~~~~~~ 263 (366)
.+.- -..++++...+..+.|+|+|+.+ .+.|+-..+.+.+. +++|||++.|....|. | +..|.|..
T Consensus 261 ~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~ 340 (503)
T KOG2550|consen 261 QAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQG 340 (503)
T ss_pred hcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcc
Confidence 0000 01123344556678899999998 46777777777664 9999999999765553 2 45677777
Q ss_pred HHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH--------------------HHH------hh---
Q 017781 264 MALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV--------------------VYS------LA--- 313 (366)
Q Consensus 264 ~~l~~i~~~~~-~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~--------------------l~~------l~--- 313 (366)
.++.++++... -.+|||+||||.+..+++|||.+||+.||+|.-+ .++ +.
T Consensus 341 TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~~s 420 (503)
T KOG2550|consen 341 TAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMESSS 420 (503)
T ss_pred cchhhHHHHHHhcCCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcceeeecCeeehhccCcchHHHHhhhh
Confidence 77777776543 2799999999999999999999999999999744 111 11
Q ss_pred -------------hcCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 314 -------------AEGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 314 -------------~~G~-------~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
++|. -.+.+++..+...++..++..|++++++++..
T Consensus 421 ~~rY~~e~dkvkiAQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~ 476 (503)
T KOG2550|consen 421 QKRYFSEVDKVKIAQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREM 476 (503)
T ss_pred hhccccccceEeeccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 0011 23888999999999999999999999999854
No 64
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.66 E-value=3.5e-15 Score=139.60 Aligned_cols=288 Identities=21% Similarity=0.291 Sum_probs=169.3
Q ss_pred hhhHHHhHhcccceeeeccccCCCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCcee-cCCCCC
Q 017781 33 QWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWST 111 (366)
Q Consensus 33 ~~t~~~N~~~f~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~-vs~~~~ 111 (366)
|.++|--. .+..|.|.||.-.. ++-.+.++++|+++++||++|+ |++ .+..-.......|.+++ +++...
T Consensus 58 E~sHrlAv-~aas~gl~Pr~~~~-d~~~L~~k~~g~~f~NPiglAA-Gfd------k~~eaidgL~~~gfG~ieigSvTp 128 (398)
T KOG1436|consen 58 EFSHRLAV-LAASWGLLPRDRVA-DDASLETKVLGRKFSNPIGLAA-GFD------KNAEAIDGLANSGFGFIEIGSVTP 128 (398)
T ss_pred HHHHHHHH-HHHHhCCCchhccC-CccchhhHHhhhhccCchhhhh-ccC------cchHHHHHHHhCCCceEEeccccc
Confidence 34444333 24577888876432 3556788899999999999998 443 24445555666888776 555554
Q ss_pred CCHHHHhccCCCceEEEee---------ecCC--HHHHHHHHHHHHHcC---C-CEEEEecCCCC-CcchhHHHhhhcCC
Q 017781 112 SSVEEVASTGPGIRFFQLY---------VYKD--RNVVAQLVRRAERAG---F-KAIALTVDTPR-LGRREADIKNRFTL 175 (366)
Q Consensus 112 ~~~e~i~~~~~~~~~~Qly---------~~~d--~~~~~~~l~ra~~~G---~-~ai~vtvd~p~-~g~r~~d~~~~~~~ 175 (366)
.+ ++.+|.|+.|.|- ..++ .+...+.++..+.+. . ..+.|++..-. ...-..|+..+..
T Consensus 129 ~p----qeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl~rl~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~- 203 (398)
T KOG1436|consen 129 KP----QEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQRLRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVR- 203 (398)
T ss_pred CC----CCCCCCCceEecccccchhhccCCCcccHHHHHHHHHHHHHhcCCCccccceeeeccccCCcchHHHHHHHhh-
Confidence 44 4456666666653 1112 122222221112111 1 11233333222 1223344444432
Q ss_pred CCccccccccccccCCCccccchhhHHHhhhccCCCCC--HHHHHHHHHh--c--CCCEEEEeccCH--H---H-----H
Q 017781 176 PPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS--WKDVKWLQTI--T--KLPILVKGVLTA--E---D-----V 239 (366)
Q Consensus 176 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~i~~lr~~--~--~~pv~vK~v~~~--~---d-----~ 239 (366)
....+.++...+++..++.+.... + .+.++. ...+-.-+.. + +.|+++|...+. + | .
T Consensus 204 ----~~g~~adylviNvSsPNtpGlr~l-q--~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v~k 276 (398)
T KOG1436|consen 204 ----VFGPFADYLVINVSSPNTPGLRSL-Q--KKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALVVK 276 (398)
T ss_pred ----hcccccceEEEeccCCCCcchhhh-h--hHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhHHHHHHHHHHHH
Confidence 111122222222333333322211 1 111111 1111122222 1 459999987533 2 2 6
Q ss_pred HcCCcEEEEcCCC-ccC----------CC---CCcc----hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCE
Q 017781 240 QAGAAGIIVSNHG-ARQ----------LD---YVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 301 (366)
Q Consensus 240 ~aGad~I~vs~~g-g~~----------~~---~~~~----~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~ 301 (366)
+.+.|+++++|.. .|. -. +|++ +.+.++++...+++++|||.+|||.||.|+.+-+.+||+.
T Consensus 277 k~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASl 356 (398)
T KOG1436|consen 277 KLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASL 356 (398)
T ss_pred HhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCchH
Confidence 7899999999854 220 01 2222 4567888888888899999999999999999999999999
Q ss_pred EEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 302 IFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 302 V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
|+++++|.|. |+. +++.++.||...|...|+.++.|+.+.
T Consensus 357 vQlyTal~ye----Gp~----i~~kIk~El~~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 357 VQLYTALVYE----GPA----IIEKIKRELSALLKAKGFTSVDDAIGK 396 (398)
T ss_pred HHHHHHHhhc----Cch----hHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 9999998763 653 788999999999999999999998764
No 65
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.65 E-value=1.4e-14 Score=139.79 Aligned_cols=179 Identities=21% Similarity=0.240 Sum_probs=126.6
Q ss_pred EcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH-------hccCCCceEEEeeecCCHHH
Q 017781 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRNV 137 (366)
Q Consensus 65 l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i-------~~~~~~~~~~Qly~~~d~~~ 137 (366)
++|. ..||+.|||++.+ +..++.++.++|...+++... .+.+++ ++....|+.+++....+.
T Consensus 7 ~lgi--~~Pii~apM~~~s------~~~la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~-- 75 (307)
T TIGR03151 7 LLGI--EYPIFQGGMAWVA------TGSLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKPFGVNIMLLSPF-- 75 (307)
T ss_pred HhCC--CCCEEcCCCCCCC------CHHHHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhcCCCcEEeeecCCCC--
Confidence 4454 4999999998643 568999999999998887532 344433 222235666665432211
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHH
Q 017781 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (366)
..+.++.+.+.|++.+.++.. .| .+.+
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g--------------------------------------------------~p---~~~i 102 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAG--------------------------------------------------NP---GKYI 102 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCC--------------------------------------------------Cc---HHHH
Confidence 234556566677766543211 11 2467
Q ss_pred HHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHH
Q 017781 218 KWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 291 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv 291 (366)
+++|+. +++++. .+.+.++ .++|+|+|++.++ ||+. +..+++..++++++.+ ++|||++|||.++.|+
T Consensus 103 ~~lk~~-g~~v~~-~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~~ 176 (307)
T TIGR03151 103 PRLKEN-GVKVIP-VVASVALAKRMEKAGADAVIAEGMESGGHI--GELTTMALVPQVVDAV--SIPVIAAGGIADGRGM 176 (307)
T ss_pred HHHHHc-CCEEEE-EcCCHHHHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHHHHHHHh--CCCEEEECCCCCHHHH
Confidence 778775 666665 4566665 8999999999886 3432 2345789999999888 7999999999999999
Q ss_pred HHHHHhCcCEEEecHHHHHHhh
Q 017781 292 FKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 292 ~kalalGAd~V~igr~~l~~l~ 313 (366)
.+++++|||+|++|+.|+....
T Consensus 177 ~~al~~GA~gV~iGt~f~~t~E 198 (307)
T TIGR03151 177 AAAFALGAEAVQMGTRFLCAKE 198 (307)
T ss_pred HHHHHcCCCEeecchHHhcccc
Confidence 9999999999999999987543
No 66
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.62 E-value=3.8e-14 Score=138.29 Aligned_cols=196 Identities=22% Similarity=0.261 Sum_probs=110.6
Q ss_pred EcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH-------hccCCCceEEEeeecCCHHH
Q 017781 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRNV 137 (366)
Q Consensus 65 l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i-------~~~~~~~~~~Qly~~~d~~~ 137 (366)
++|. ..||+.+||++.+ ...|+-+.+++|...+++.. ..+.+++ ++....|+.+++........
T Consensus 7 ~lgi--~~PIiqapM~~is------~~~LaaAVs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~ 77 (330)
T PF03060_consen 7 LLGI--KYPIIQAPMGGIS------TPELAAAVSNAGGLGFLGAG-GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPA 77 (330)
T ss_dssp HHT---SSSEEE---TTTS------SHHHHHHHHHTTSBEEEECT-TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHH
T ss_pred HhCC--CcCEEcCCCCCCC------hHHHHHHHHhCCCEeecccc-ccChHHHHHHHHHHHhhccccccccccccCcccc
Confidence 4454 4899999998733 55899999999999999853 3444433 23334578888765443322
Q ss_pred HH-H---------HHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhc
Q 017781 138 VA-Q---------LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ 207 (366)
Q Consensus 138 ~~-~---------~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (366)
.. + .++...+.+.. -...+..-+.... ..+. .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~------------------------~~v~-~ 119 (330)
T PF03060_consen 78 DEEDAWPKELGNAVLELCIEEGVP-------------FEEQLDVALEAKP------------------------DVVS-F 119 (330)
T ss_dssp HH-HHHHHHTHHHHHHHHHHTT-S-------------HHHHHHHHHHS--------------------------SEEE-E
T ss_pred hhhhhhhhhhHHHHHHHHHHhCcc-------------cccccccccccce------------------------EEEE-e
Confidence 22 0 11111222211 0000000000000 0000 0
Q ss_pred cCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCC--CccCC-CCCcchHHHHHHHHHHcCCCceEE
Q 017781 208 IDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNH--GARQL-DYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 208 ~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~--gg~~~-~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
.......+.++.+++. ++.++. .+.+.++ .++|+|+|++.+. ||+.. +.+ +++.+++++++.+ ++|||
T Consensus 120 ~~G~p~~~~i~~l~~~-gi~v~~-~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~-~~~~L~~~v~~~~--~iPVi 194 (330)
T PF03060_consen 120 GFGLPPPEVIERLHAA-GIKVIP-QVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVG-STFSLLPQVRDAV--DIPVI 194 (330)
T ss_dssp ESSSC-HHHHHHHHHT-T-EEEE-EESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG--HHHHHHHHHHH---SS-EE
T ss_pred ecccchHHHHHHHHHc-CCcccc-ccCCHHHHHHhhhcCCCEEEEeccccCCCCCcccc-ceeeHHHHHhhhc--CCcEE
Confidence 0111234567888774 776666 4567766 9999999999874 56543 222 5788999999988 79999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHHHHHHh
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~~l~~l 312 (366)
+.|||.++.+++.+|++|||+|++|+.|+..-
T Consensus 195 aAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~ 226 (330)
T PF03060_consen 195 AAGGIADGRGIAAALALGADGVQMGTRFLATE 226 (330)
T ss_dssp EESS--SHHHHHHHHHCT-SEEEESHHHHTST
T ss_pred EecCcCCHHHHHHHHHcCCCEeecCCeEEecc
Confidence 99999999999999999999999999998653
No 67
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=2.6e-14 Score=136.86 Aligned_cols=194 Identities=23% Similarity=0.257 Sum_probs=144.7
Q ss_pred EecccccccccCChhhHHHHHHHHHcCCceecCCCCCC--CH--HHHh----ccCC--CceEEEeeecCCHHHHHHHHHH
Q 017781 75 MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS--SV--EEVA----STGP--GIRFFQLYVYKDRNVVAQLVRR 144 (366)
Q Consensus 75 ~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~--~~--e~i~----~~~~--~~~~~Qly~~~d~~~~~~~l~r 144 (366)
++|||-..+ +.++++.++..|.-.+.+.|... -+ |... ...+ .|.++|+- .+|++.+.+..+.
T Consensus 22 i~APMvd~S------~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~-~ndp~~ll~Aa~l 94 (358)
T KOG2335|consen 22 IVAPMVDYS------ELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFG-GNDPENLLKAARL 94 (358)
T ss_pred ccCCccccc------HHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEc-CCCHHHHHHHHHH
Confidence 689996544 89999999999988887766321 00 1111 1122 68999976 6899998888888
Q ss_pred HHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhc
Q 017781 145 AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT 224 (366)
Q Consensus 145 a~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~ 224 (366)
++..+ ++|.+|++||.. . -.+.+ .+.+++ .++++.-+.|+.+++.+
T Consensus 95 v~~y~-D~idlNcGCPq~---~-a~~g~---------------------------yGa~L~--~~~eLv~e~V~~v~~~l 140 (358)
T KOG2335|consen 95 VQPYC-DGIDLNCGCPQK---V-AKRGG---------------------------YGAFLM--DNPELVGEMVSAVRANL 140 (358)
T ss_pred hhhhc-CcccccCCCCHH---H-HhcCC---------------------------ccceec--cCHHHHHHHHHHHHhhc
Confidence 88776 999999999942 0 00011 122233 24555667899999999
Q ss_pred CCCEEEEeccCH--HH--------HHcCCcEEEEcCCCccCC--CCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHH
Q 017781 225 KLPILVKGVLTA--ED--------VQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 292 (366)
Q Consensus 225 ~~pv~vK~v~~~--~d--------~~aGad~I~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~ 292 (366)
+.||.+|+.... ++ .++|++.++|+++...+- -.++..|+.+..+++.+++ +|||++|+|.+..|+-
T Consensus 141 ~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipviaNGnI~~~~d~~ 219 (358)
T KOG2335|consen 141 NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD-IPVIANGNILSLEDVE 219 (358)
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEeeCCcCcHHHHH
Confidence 999999987543 22 899999999977544333 2678899999999999964 9999999999999999
Q ss_pred HHHH-hCcCEEEecHHHHH
Q 017781 293 KALA-LGASGIFIGRPVVY 310 (366)
Q Consensus 293 kala-lGAd~V~igr~~l~ 310 (366)
.++. .|||+||.||..|+
T Consensus 220 ~~~~~tG~dGVM~arglL~ 238 (358)
T KOG2335|consen 220 RCLKYTGADGVMSARGLLY 238 (358)
T ss_pred HHHHHhCCceEEecchhhc
Confidence 9999 99999999995543
No 68
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.55 E-value=8e-14 Score=128.72 Aligned_cols=149 Identities=14% Similarity=0.127 Sum_probs=111.5
Q ss_pred CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHH
Q 017781 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (366)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
.+..+|+- ..+++...+.++.+.+ +++.+.|++.||+. .+. + .+.+.
T Consensus 68 ~~vivnv~-~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~-----~v~-----------~---------------~g~G~ 114 (231)
T TIGR00736 68 ALVSVNVR-FVDLEEAYDVLLTIAE-HADIIEINAHCRQP-----EIT-----------E---------------IGIGQ 114 (231)
T ss_pred CCEEEEEe-cCCHHHHHHHHHHHhc-CCCEEEEECCCCcH-----HHc-----------C---------------CCCch
Confidence 57899986 4688888888887765 89999999999963 000 0 01112
Q ss_pred HhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHH--H--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHH
Q 017781 203 YVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE--D--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 272 (366)
Q Consensus 203 ~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~--d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~ 272 (366)
.+. .|++...+.++.+++ .++||.+|...... + .++|+|+|+|+. +.. ..+...++.+.++++.
T Consensus 115 ~Ll--~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~--~~~-g~~~a~~~~I~~i~~~ 188 (231)
T TIGR00736 115 ELL--KNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDA--MYP-GKPYADMDLLKILSEE 188 (231)
T ss_pred hhc--CCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEee--CCC-CCchhhHHHHHHHHHh
Confidence 222 256666677888885 58999999886332 1 899999999953 211 1122689999999998
Q ss_pred cCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 273 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 273 ~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
++ .+|||++|||++.+|+.+++..|||+||+||+.+.+
T Consensus 189 ~~-~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 189 FN-DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred cC-CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 73 399999999999999999999999999999988753
No 69
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.46 E-value=8.8e-12 Score=115.61 Aligned_cols=184 Identities=22% Similarity=0.267 Sum_probs=123.9
Q ss_pred CCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHH-------hccCCCceEEEeeecCCHHHHHHHHH
Q 017781 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRNVVAQLVR 143 (366)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i-------~~~~~~~~~~Qly~~~d~~~~~~~l~ 143 (366)
..|++.|||.+.+ +..+++++.+.|....++.. ..+.+++ .+....+..+++..........+.++
T Consensus 2 ~~pi~~a~m~g~~------~~~~~~~~~~~G~ig~i~~~-~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGVS------TPELAAAVSNAGGLGFIGAG-YLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCCC------CHHHHHHHHhCCCccccCCC-CCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 4799999997653 66899999999865555432 2223322 22222345577765331134567788
Q ss_pred HHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHh
Q 017781 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (366)
Q Consensus 144 ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~ 223 (366)
.+.++|++.+.++-+ ...+.++++++
T Consensus 75 ~~~~~g~d~v~l~~~-----------------------------------------------------~~~~~~~~~~~- 100 (236)
T cd04730 75 VALEEGVPVVSFSFG-----------------------------------------------------PPAEVVERLKA- 100 (236)
T ss_pred HHHhCCCCEEEEcCC-----------------------------------------------------CCHHHHHHHHH-
Confidence 889999999876321 01223445554
Q ss_pred cCCCEEEEeccCHHH----HHcCCcEEEEcCCC--ccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh
Q 017781 224 TKLPILVKGVLTAED----VQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 297 (366)
Q Consensus 224 ~~~pv~vK~v~~~~d----~~aGad~I~vs~~g--g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal 297 (366)
.+++++++ +.+.++ .+.|+|+|.+.+.+ |.........++.+.++++.. ++||++.|||++++|+.+++.+
T Consensus 101 ~~i~~i~~-v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~~ 177 (236)
T cd04730 101 AGIKVIPT-VTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALAL 177 (236)
T ss_pred cCCEEEEe-CCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHc
Confidence 36777665 334444 77899999986542 222111134678888888777 7999999999999999999999
Q ss_pred CcCEEEecHHHHHHhhhcCHH
Q 017781 298 GASGIFIGRPVVYSLAAEGEK 318 (366)
Q Consensus 298 GAd~V~igr~~l~~l~~~G~~ 318 (366)
|||+|++|+.++....+.+..
T Consensus 178 GadgV~vgS~l~~~~e~~~~~ 198 (236)
T cd04730 178 GADGVQMGTRFLATEESGASP 198 (236)
T ss_pred CCcEEEEchhhhcCcccCCCH
Confidence 999999999999876554444
No 70
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.41 E-value=5.7e-12 Score=122.88 Aligned_cols=98 Identities=30% Similarity=0.440 Sum_probs=78.9
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCC--CccCC--CCCcchHHHHHHHHHHcCCC-ceEEEec
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNH--GARQL--DYVPATIMALEEVVKATQGR-IPVFLDG 283 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~--gg~~~--~~~~~~~~~l~~i~~~~~~~-i~vi~~G 283 (366)
.-+.++.+++ .+..++.+.+ +... .++|+|+|++.+. ||+.- +..++++.+++++++++ + +|||+.|
T Consensus 116 ~~~~i~~~~~-~g~~v~~~v~-~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAG 191 (336)
T COG2070 116 PAEFVARLKA-AGIKVIHSVI-TVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAG 191 (336)
T ss_pred cHHHHHHHHH-cCCeEEEEeC-CHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEec
Confidence 3467888888 5777777655 3333 8999999998864 45432 34677889999999998 6 9999999
Q ss_pred CCCCHHHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 284 GVRRGTDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 284 GI~~~~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
||.++.++..||++||++|++|+.|+..-.|
T Consensus 192 GI~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea 222 (336)
T COG2070 192 GIADGRGIAAALALGADGVQMGTRFLATKEA 222 (336)
T ss_pred CccChHHHHHHHHhccHHHHhhhhhhccccc
Confidence 9999999999999999999999999875443
No 71
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.34 E-value=9.1e-11 Score=116.68 Aligned_cols=214 Identities=18% Similarity=0.145 Sum_probs=127.7
Q ss_pred EcCcccCCceEecccc-cccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHh-------cc-C-CCceEEEeeec-C
Q 017781 65 VLGFKISMPIMIAPTA-MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------ST-G-PGIRFFQLYVY-K 133 (366)
Q Consensus 65 l~g~~l~~Pi~iApm~-~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~-------~~-~-~~~~~~Qly~~-~ 133 (366)
++|. ..|++.+||+ +.+ ..+|+.++.++|....++... .+.+++. +. . ..|+.++|+.. .
T Consensus 9 ~lgi--ryPii~gpMa~Gis------s~eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~ 79 (418)
T cd04742 9 DYGL--RYAYVAGAMARGIA------SAELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSPD 79 (418)
T ss_pred HhCC--CccEECCcccCCCC------CHHHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCCC
Confidence 4444 5899999997 332 568999999999998888653 4455542 22 2 36889998753 3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEe--cCC-CCCcchhHHHhhhcCCC-Cc-cccccccccccCCCcc-ccchhhHHHhhhc
Q 017781 134 DRNVVAQLVRRAERAGFKAIALT--VDT-PRLGRREADIKNRFTLP-PF-LTLKNFQGLDLGKMDE-ANDSGLAAYVAGQ 207 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vt--vd~-p~~g~r~~d~~~~~~~p-~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 207 (366)
+++...+.++...+.|.+.+... .+. |.. .+.++ .|+... .+ +..++ ..+.+ .+.. ..+.
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~~-~~~r~--~G~~~~~~g~~~~~~------~ViakVsr~e-vAs~---- 145 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASAFMQLTPAL-VRYRA--KGLRRDADGRVQIAN------RIIAKVSRPE-VAEA---- 145 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEeccccCCCcch-hhHHh--cCCcccccccccccc------eEEEecCChh-hhhh----
Confidence 44555667888888898876543 111 111 11110 111000 00 00000 00000 0000 0111
Q ss_pred cCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcC-CcEEEEcC-CCccCCCCCcchHHHHHHHHH---Hc-----
Q 017781 208 IDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAG-AAGIIVSN-HGARQLDYVPATIMALEEVVK---AT----- 273 (366)
Q Consensus 208 ~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aG-ad~I~vs~-~gg~~~~~~~~~~~~l~~i~~---~~----- 273 (366)
.-.+..-+.++++++. ++ .|.++ .+.| +|.|++.. .||+. +..+++..++.+.+ .+
T Consensus 146 ~f~ppp~~~v~~L~~~-G~-------it~~eA~~A~~~g~aD~Ivvq~EAGGH~--g~~~~~~Llp~v~~l~d~v~~~~~ 215 (418)
T cd04742 146 FMSPAPERILKKLLAE-GK-------ITEEQAELARRVPVADDITVEADSGGHT--DNRPLSVLLPTIIRLRDELAARYG 215 (418)
T ss_pred hcCCCCHHHHHHHHHc-CC-------CCHHHHHHHHhCCCCCEEEEcccCCCCC--CCccHHhHHHHHHHHHHHHhhccc
Confidence 1122355678888875 32 27776 8999 59999874 24543 22345555555543 33
Q ss_pred -CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 274 -QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 274 -~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
..++||++.|||.|+.+++.|+++|||+|++|+.|+-.
T Consensus 216 ~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat 254 (418)
T cd04742 216 YRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCT 254 (418)
T ss_pred cCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhC
Confidence 12599999999999999999999999999999999764
No 72
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.34 E-value=7e-11 Score=113.80 Aligned_cols=177 Identities=17% Similarity=0.212 Sum_probs=118.6
Q ss_pred CCceEecccccccccCChhh-HHHHHHHHHcCCceecCCCCCCCHHHH-------hcc-CCCceEEEeeecCCHHHHHHH
Q 017781 71 SMPIMIAPTAMQKMAHPEGE-YATARAASAAGTIMTLSSWSTSSVEEV-------AST-GPGIRFFQLYVYKDRNVVAQL 141 (366)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~e-~~la~aa~~~G~~~~vs~~~~~~~e~i-------~~~-~~~~~~~Qly~~~d~~~~~~~ 141 (366)
..||+.+||+..+ + ..|+.+.+++|...+++.. ..+.+++ ++. ...|+.++|-...+.....+.
T Consensus 2 ~yPIiqgpM~~vs------~~~~LaaAVS~AGgLG~la~~-~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~ 74 (320)
T cd04743 2 RYPIVQGPMTRVS------DVAEFAVAVAEGGGLPFIALA-LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQ 74 (320)
T ss_pred CCCEECCCcCCCC------CcHHHHHHHHhCCccccCCCC-CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHH
Confidence 4899999998643 3 5799999999998887643 3344433 221 235777776432222333456
Q ss_pred HHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHH
Q 017781 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQ 221 (366)
Q Consensus 142 l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr 221 (366)
++.+.+.+.+.+.++.. .| + .+++++
T Consensus 75 l~vi~e~~v~~V~~~~G--------------------------------------------------~P---~-~~~~lk 100 (320)
T cd04743 75 LAVVRAIKPTFALIAGG--------------------------------------------------RP---D-QARALE 100 (320)
T ss_pred HHHHHhcCCcEEEEcCC--------------------------------------------------Ch---H-HHHHHH
Confidence 66666666665543211 12 1 246666
Q ss_pred HhcCCCEEEEeccCHHH----HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcC--------CCceEEEecCCCC
Q 017781 222 TITKLPILVKGVLTAED----VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRR 287 (366)
Q Consensus 222 ~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~--------~~i~vi~~GGI~~ 287 (366)
+. +++++.. +.++.. .++|+|+|++.++ ||+. +..+++..++++.+.+. .++|||+.|||.+
T Consensus 101 ~~-Gi~v~~~-v~s~~~A~~a~~~GaD~vVaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~d 176 (320)
T cd04743 101 AI-GISTYLH-VPSPGLLKQFLENGARKFIFEGRECGGHV--GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHD 176 (320)
T ss_pred HC-CCEEEEE-eCCHHHHHHHHHcCCCEEEEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCC
Confidence 63 7666644 456555 9999999999885 5543 23445556666655441 2699999999999
Q ss_pred HHHHHHHHHhCc--------CEEEecHHHHHHh
Q 017781 288 GTDVFKALALGA--------SGIFIGRPVVYSL 312 (366)
Q Consensus 288 ~~dv~kalalGA--------d~V~igr~~l~~l 312 (366)
+..++.++++|| ++|++|+.|+..-
T Consensus 177 gr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~ 209 (320)
T cd04743 177 ERSAAMVSALAAPLAERGAKVGVLMGTAYLFTE 209 (320)
T ss_pred HHHHHHHHHcCCcccccccccEEEEccHHhcch
Confidence 999999999999 8999999998753
No 73
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.32 E-value=4.4e-11 Score=116.99 Aligned_cols=98 Identities=20% Similarity=0.198 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHHhcCCCEEEEecc--------CHHH--------HHcCCcEEEEcCCCccC--CCCC-cchHHHHHHHHH
Q 017781 211 SLSWKDVKWLQTITKLPILVKGVL--------TAED--------VQAGAAGIIVSNHGARQ--LDYV-PATIMALEEVVK 271 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~~pv~vK~v~--------~~~d--------~~aGad~I~vs~~gg~~--~~~~-~~~~~~l~~i~~ 271 (366)
.+..+.++.+|+.++.||.+|... +.++ .++|+|.|.||...-.. .... ...++...++++
T Consensus 193 Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~ 272 (337)
T PRK13523 193 RFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIRE 272 (337)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHh
Confidence 456788999999998999999763 4554 77899999997643111 1111 114566677777
Q ss_pred HcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 272 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 272 ~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
.+ ++||++.|+|++++++.++|+.| ||+|++||+++.
T Consensus 273 ~~--~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ia 310 (337)
T PRK13523 273 HA--NIATGAVGLITSGAQAEEILQNNRADLIFIGRELLR 310 (337)
T ss_pred hc--CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHh
Confidence 77 79999999999999999999987 999999999985
No 74
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.26 E-value=3.6e-10 Score=100.21 Aligned_cols=181 Identities=23% Similarity=0.246 Sum_probs=120.4
Q ss_pred eEecccccccccCChhhHHHHHHHHHcCCceec-CCCC-----C--CC---HHHHhccCCCceEEEeeecCCHHHHHHHH
Q 017781 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWS-----T--SS---VEEVASTGPGIRFFQLYVYKDRNVVAQLV 142 (366)
Q Consensus 74 i~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-s~~~-----~--~~---~e~i~~~~~~~~~~Qly~~~d~~~~~~~l 142 (366)
|++++|..+.. +...++++.+.+.|+.++. .+.. . .. ++.+......+.++|++.....+......
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (200)
T cd04722 1 VILALLAGGPS---GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAA 77 (200)
T ss_pred CeeeccccCch---HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHH
Confidence 45677755321 3356899999998876653 2211 1 11 33344444467889998654444443335
Q ss_pred HHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHH
Q 017781 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (366)
Q Consensus 143 ~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~ 222 (366)
++++++|++.+.++..++.. +....+.++++++
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~-----------------------------------------------~~~~~~~~~~i~~ 110 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYL-----------------------------------------------AREDLELIRELRE 110 (200)
T ss_pred HHHHHcCCCEEEEeccCCcH-----------------------------------------------HHHHHHHHHHHHH
Confidence 68889999999887665311 1224567888998
Q ss_pred hc-CCCEEEEeccCHH--H---HHcCCcEEEEcCCCccCCCCCcc--hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHH
Q 017781 223 IT-KLPILVKGVLTAE--D---VQAGAAGIIVSNHGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 294 (366)
Q Consensus 223 ~~-~~pv~vK~v~~~~--d---~~aGad~I~vs~~gg~~~~~~~~--~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~ka 294 (366)
.+ +.|+++|.....+ + .+.|+|.|.++++.+.+...... ....+..+++.. ++||+++|||.+++++.++
T Consensus 111 ~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pi~~~GGi~~~~~~~~~ 188 (200)
T cd04722 111 AVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGS--KVPVIAGGGINDPEDAAEA 188 (200)
T ss_pred hcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHH
Confidence 87 7999999764322 1 67899999998865433222221 123344444433 7999999999999999999
Q ss_pred HHhCcCEEEecH
Q 017781 295 LALGASGIFIGR 306 (366)
Q Consensus 295 lalGAd~V~igr 306 (366)
+.+|||+|++||
T Consensus 189 ~~~Gad~v~vgs 200 (200)
T cd04722 189 LALGADGVIVGS 200 (200)
T ss_pred HHhCCCEEEecC
Confidence 999999999996
No 75
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.20 E-value=1.8e-09 Score=108.15 Aligned_cols=213 Identities=19% Similarity=0.173 Sum_probs=124.7
Q ss_pred cCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc-------cCC-Cc-eEEEeeecC-CHHHHH
Q 017781 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS-------TGP-GI-RFFQLYVYK-DRNVVA 139 (366)
Q Consensus 70 l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~-------~~~-~~-~~~Qly~~~-d~~~~~ 139 (366)
+..|++.+||+.+ .. ..+|+.+..++|....++... .+++++.+ ..+ ++ +.++|+.+. +++.-.
T Consensus 17 iryPiiqgpMa~G-iS----s~eLVaAVs~AGgLG~lgag~-l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~e~ 90 (444)
T TIGR02814 17 VRYAYVAGAMANG-IA----SAELVIAMGRAGILGFFGAGG-LPLEEVEQAIHRIQQALPGGPAYGVNLIHSPSDPALEW 90 (444)
T ss_pred CCCcEECccccCC-CC----CHHHHHHHHhCCceeeeCCCC-CCHHHHHHHHHHHHHhcCCCCceEEEecccCCCcccHH
Confidence 4589999999731 22 568999999999998888653 45555532 223 36 888987543 333344
Q ss_pred HHHHHHHHcCCCEEEEe--cC-CCCCcchhHHHhhhcCCCC--ccccccccccccCCCcc-ccchhhHHHhhhccCCCCC
Q 017781 140 QLVRRAERAGFKAIALT--VD-TPRLGRREADIKNRFTLPP--FLTLKNFQGLDLGKMDE-ANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 140 ~~l~ra~~~G~~ai~vt--vd-~p~~g~r~~d~~~~~~~p~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 213 (366)
++++.+.+.|.+.+... ++ +|.. .+.+ ..|+.... ++..++ ..+.+ .+.. .....+ .+..
T Consensus 91 ~~v~l~l~~~V~~veasa~~~~~p~~-v~~r--~~G~~~~~~g~~~~~~------~ViakVsr~~-vAs~f~----~p~p 156 (444)
T TIGR02814 91 GLVDLLLRHGVRIVEASAFMQLTPAL-VRYR--AKGLHRDADGRVVIRN------RLIAKVSRPE-VAEAFM----SPAP 156 (444)
T ss_pred HHHHHHHHcCCCEEEeccccCCCcch-hhhh--hccccccccccccccc------eEEEecCCHH-HHHHhc----CCCc
Confidence 56677778888876543 11 1211 0100 01110000 000000 00000 0000 011111 1223
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH----HHcC-CcEEEEcC-CCccCCCCCcchHHHHHHHH---HHc------CCCce
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED----VQAG-AAGIIVSN-HGARQLDYVPATIMALEEVV---KAT------QGRIP 278 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d----~~aG-ad~I~vs~-~gg~~~~~~~~~~~~l~~i~---~~~------~~~i~ 278 (366)
-+.|+.+++. + +.|.++ .+.| +|.|++.. .||+. +..+++..++.+. +.+ ..++|
T Consensus 157 ~~~v~~L~~~-G-------~it~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~~y~~~Vp 226 (444)
T TIGR02814 157 AHILQKLLAE-G-------RITREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRYGYRKPIR 226 (444)
T ss_pred HHHHHHHHHc-C-------CCCHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcccCCCCce
Confidence 4567777764 2 227777 8888 59998863 25543 2335666677664 333 12689
Q ss_pred EEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHh
Q 017781 279 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 279 vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l 312 (366)
|++.|||.|+.+++.|+++|||+|++|+.|+-+.
T Consensus 227 ViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~ 260 (444)
T TIGR02814 227 VGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTV 260 (444)
T ss_pred EEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCc
Confidence 9999999999999999999999999999998653
No 76
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.17 E-value=1.3e-09 Score=107.08 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHhcCCCEEEEecc----------CHHH--------HHcC-CcEEEEcCCCccCC----------CCCc-
Q 017781 211 SLSWKDVKWLQTITKLPILVKGVL----------TAED--------VQAG-AAGIIVSNHGARQL----------DYVP- 260 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~~pv~vK~v~----------~~~d--------~~aG-ad~I~vs~~gg~~~----------~~~~- 260 (366)
.+..+.++.+|+.++.++.||..+ +.++ .++| +|+|.||...-... ....
T Consensus 192 r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ 271 (343)
T cd04734 192 RFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPG 271 (343)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcc
Confidence 456788999999986555444332 2343 6788 89999974321110 1111
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
..++....+++.+ ++|||++|||++++++.++++.| ||+|++||+++.
T Consensus 272 ~~~~~~~~ik~~~--~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 272 PFLPLAARIKQAV--DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred hhHHHHHHHHHHc--CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHh
Confidence 1356777788877 79999999999999999999976 999999999985
No 77
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=99.15 E-value=1.5e-10 Score=109.87 Aligned_cols=253 Identities=16% Similarity=0.147 Sum_probs=169.6
Q ss_pred eccccCCCCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhcc--------
Q 017781 49 RPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST-------- 120 (366)
Q Consensus 49 ~pr~l~~~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~-------- 120 (366)
.|..|.-++++|.+++..|+++++||.++.- .|.....+.+.|-..|.++.+.-.....-..|...
T Consensus 91 ~~k~~~~l~~ie~~vd~~G~k~~npf~~~s~------Pp~t~~~lm~raf~~gwg~l~~kt~~ld~~kV~nv~prvar~~ 164 (471)
T KOG1799|consen 91 GLKALLYLKSIEELVDWDGQKPANPFHQKSK------PPPTIAELMDRAFPSGWGYLEQKTKILDENKVRNVEPRVARSP 164 (471)
T ss_pred chhhhcchhhhhhhccccCccCCCccccCCC------CCCccHHHHHhhhhcccchhheeeeecchhhheecccceeecc
Confidence 3566667889999999999999999988652 24456789999999999987632111100001000
Q ss_pred ------CC-CceEEE--eee-----------------------------cCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 121 ------GP-GIRFFQ--LYV-----------------------------YKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 121 ------~~-~~~~~Q--ly~-----------------------------~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
.| .+.|.+ |.. -.+.....++.++.+++|.+.+-+++.||+.
T Consensus 165 t~~~~~~p~~~i~~nielIsdr~~e~~L~~f~eLk~~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphg 244 (471)
T KOG1799|consen 165 TKRSCFIPKRPIPTNIELISDRKAEQYLGTFGELKNVEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHG 244 (471)
T ss_pred CCCCccccCCCccchhhhhccchHHHHHHHHHHhcccCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCC
Confidence 00 011100 000 0122224567778888888888888888863
Q ss_pred cchhHHHhhhcCCCC-ccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH---
Q 017781 163 GRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED--- 238 (366)
Q Consensus 163 g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d--- 238 (366)
++. ++.+. + ..+|...-+...|++....+|++-|...+..|
T Consensus 245 ------------m~ergmgla---------------------~--gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~re 289 (471)
T KOG1799|consen 245 ------------MCERGMGLA---------------------L--GQCPIVDCEVCGWINAKATIPMVSKMTPNITDKRE 289 (471)
T ss_pred ------------Cccccccce---------------------e--ccChhhhHHHhhhhhhccccccccccCCCcccccc
Confidence 111 11110 0 12455667889999999999999999887766
Q ss_pred -----HHcCCcEEEEcCCC------------------ccCCCCC-------cchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 239 -----VQAGAAGIIVSNHG------------------ARQLDYV-------PATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 239 -----~~aGad~I~vs~~g------------------g~~~~~~-------~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.+.|+.+|...|.- |+.-.+| |..+..+..|++.+. ..|+.+.|||.++
T Consensus 290 var~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~-~F~l~~~GGvEt~ 368 (471)
T KOG1799|consen 290 VARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK-EFSLSGIGGVETG 368 (471)
T ss_pred cchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh-cCccccccCcccc
Confidence 67778887755420 1111122 334555666777664 7899999999999
Q ss_pred HHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017781 289 TDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l 351 (366)
.|.+..|.+|++.|++.+..+- .|.. .++.+-.||+.+|.+.|.+++++++++.|
T Consensus 369 ~~~~~Fil~Gs~~vQVCt~V~~----~~~~----~V~~~Ca~LK~~m~~~~~~ti~~~~G~SL 423 (471)
T KOG1799|consen 369 YDAAEFILLGSNTVQVCTGVMM----HGYG----HVKTLCAELKDFMKQHNFSTIEEFRGHSL 423 (471)
T ss_pred cchhhHhhcCCcHhhhhhHHHh----cCcc----hHHHHHHHHHHHHHHcCchhhhhccCcch
Confidence 9999999999999999998764 2443 34567789999999999999999998854
No 78
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.13 E-value=6.2e-09 Score=101.95 Aligned_cols=100 Identities=22% Similarity=0.231 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHHhc--CCCEEEEec--------cCHHH--------HHcCCcEEEEcCCCcc--CC-CCCc-chHHHHH
Q 017781 210 RSLSWKDVKWLQTIT--KLPILVKGV--------LTAED--------VQAGAAGIIVSNHGAR--QL-DYVP-ATIMALE 267 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~--~~pv~vK~v--------~~~~d--------~~aGad~I~vs~~gg~--~~-~~~~-~~~~~l~ 267 (366)
..+..+.++.+|+.+ +.||.+|.. .+.++ .+.|+|+|.|+.++.. +. ...+ ..++.+.
T Consensus 204 ~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~ 283 (336)
T cd02932 204 MRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAE 283 (336)
T ss_pred hHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHH
Confidence 345678899999999 689999954 24444 6789999999864321 11 1111 1346677
Q ss_pred HHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 268 EVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 268 ~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
++++.+ ++||+++|||.+++++.++|+.| ||+|++||+++..
T Consensus 284 ~ir~~~--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~d 326 (336)
T cd02932 284 RIRQEA--GIPVIAVGLITDPEQAEAILESGRADLVALGRELLRN 326 (336)
T ss_pred HHHhhC--CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhC
Confidence 788877 79999999999999999999998 9999999999863
No 79
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.07 E-value=8.5e-09 Score=95.00 Aligned_cols=169 Identities=21% Similarity=0.186 Sum_probs=107.9
Q ss_pred HHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCC-----H--HHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 017781 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKD-----R--NVVAQLVRRAERAGFKAIALTVDTPRLG 163 (366)
Q Consensus 91 ~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d-----~--~~~~~~l~ra~~~G~~ai~vtvd~p~~g 163 (366)
..+++++.+.|+..+.. .+...++++++....|....+| +| - ....+.++.+.++|++.+.+ |.+...
T Consensus 26 ~~~a~a~~~~G~~~~~~-~~~~~i~~i~~~~~~Pil~~~~--~d~~~~~~~~~~~~~~v~~a~~aGad~I~~--d~~~~~ 100 (221)
T PRK01130 26 AAMALAAVQGGAVGIRA-NGVEDIKAIRAVVDVPIIGIIK--RDYPDSEVYITPTLKEVDALAAAGADIIAL--DATLRP 100 (221)
T ss_pred HHHHHHHHHCCCeEEEc-CCHHHHHHHHHhCCCCEEEEEe--cCCCCCCceECCCHHHHHHHHHcCCCEEEE--eCCCCC
Confidence 68999999999875542 1112233444333344433333 11 0 00234578889999996654 433100
Q ss_pred chhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----H
Q 017781 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----V 239 (366)
Q Consensus 164 ~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~ 239 (366)
.| +.....+.++++++..++|++ ..+.+.++ .
T Consensus 101 -----------~p--------------------------------~~~~~~~~i~~~~~~~~i~vi-~~v~t~ee~~~a~ 136 (221)
T PRK01130 101 -----------RP--------------------------------DGETLAELVKRIKEYPGQLLM-ADCSTLEEGLAAQ 136 (221)
T ss_pred -----------CC--------------------------------CCCCHHHHHHHHHhCCCCeEE-EeCCCHHHHHHHH
Confidence 00 001123456777764466655 45667776 8
Q ss_pred HcCCcEEEEcCCCccC--CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 240 QAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 240 ~aGad~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
++|+|+|.++++|-+. .......++.+.++++.+ ++||++.|||++++|+.+++++|||+|++|+.++.
T Consensus 137 ~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 137 KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcC
Confidence 9999999876544221 122344578888898887 79999999999999999999999999999998754
No 80
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.07 E-value=1.7e-09 Score=105.34 Aligned_cols=98 Identities=23% Similarity=0.234 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHHhc--CCCEEEEecc--------CHHH--------HHcCCcEEEEcCCCccCCCC--------CcchHH
Q 017781 211 SLSWKDVKWLQTIT--KLPILVKGVL--------TAED--------VQAGAAGIIVSNHGARQLDY--------VPATIM 264 (366)
Q Consensus 211 ~~~~~~i~~lr~~~--~~pv~vK~v~--------~~~d--------~~aGad~I~vs~~gg~~~~~--------~~~~~~ 264 (366)
.+..+.++.+|+.+ +.||.+|... +.++ .++|+|+|.+++....+... ....++
T Consensus 192 r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 271 (327)
T cd02803 192 RFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLE 271 (327)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHH
Confidence 34678899999998 6899999763 3343 88999999998754322111 123456
Q ss_pred HHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh-CcCEEEecHHHHH
Q 017781 265 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 310 (366)
Q Consensus 265 ~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal-GAd~V~igr~~l~ 310 (366)
.+..+++.+ ++||+++|||++++++.++|+. |||+|++||+++.
T Consensus 272 ~~~~ir~~~--~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 272 LAEKIKKAV--KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred HHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence 777788877 7999999999999999999998 7999999999985
No 81
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.03 E-value=1.6e-08 Score=93.09 Aligned_cols=95 Identities=22% Similarity=0.270 Sum_probs=73.9
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccC--CCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
..+.++++++..++|+++ .+.+.++ .++|+|+|.+.++|-+. .....+.++.+.++++.+ ++||++.|||+
T Consensus 111 ~~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~ 187 (219)
T cd04729 111 LAELIKRIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRIN 187 (219)
T ss_pred HHHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCC
Confidence 345677888765577766 4567766 89999999765554211 122335678899998877 79999999999
Q ss_pred CHHHHHHHHHhCcCEEEecHHHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+++|+.+++++|||+|++|+.++.
T Consensus 188 ~~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 188 SPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred CHHHHHHHHHCCCCEEEEchHHhC
Confidence 999999999999999999999864
No 82
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.02 E-value=2.5e-08 Score=88.55 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCcc--CCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
.+.++++|+.. -+++-.+.+.|| .++|+|.|--...|.+ ... ..|.++++.++++. .+|||+.|+|.+
T Consensus 82 ~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~---~~pvIaEGri~t 155 (192)
T PF04131_consen 82 EELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA---DVPVIAEGRIHT 155 (192)
T ss_dssp HHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT---TSEEEEESS--S
T ss_pred HHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC---CCcEeecCCCCC
Confidence 35699999987 678888999998 9999999975544443 223 56789999998864 699999999999
Q ss_pred HHHHHHHHHhCcCEEEecHHHHH
Q 017781 288 GTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~ 310 (366)
++++.++|.+||++|.+|+++..
T Consensus 156 pe~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 156 PEQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp HHHHHHHHHTT-SEEEE-HHHH-
T ss_pred HHHHHHHHhcCCeEEEECcccCC
Confidence 99999999999999999998754
No 83
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=99.01 E-value=4.6e-09 Score=103.74 Aligned_cols=203 Identities=16% Similarity=0.207 Sum_probs=141.6
Q ss_pred ccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCH-------H-HHhccCC--CceEEEeeecCCHHHH
Q 017781 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSV-------E-EVASTGP--GIRFFQLYVYKDRNVV 138 (366)
Q Consensus 69 ~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~-------e-~i~~~~~--~~~~~Qly~~~d~~~~ 138 (366)
.+.--.++||++-. ||++++|.|+++|.-.+.|+|+.+.. | .+...++ ..+.+||-. ..++.+
T Consensus 262 D~r~K~~LaPLTTv------GNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag-~~pdt~ 334 (614)
T KOG2333|consen 262 DFRDKKYLAPLTTV------GNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAG-SKPDTA 334 (614)
T ss_pred ccccceeecccccc------CCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEecc-CChHHH
Confidence 34467889998643 48899999999999999999865311 1 1112222 568889974 445555
Q ss_pred HHHHHHHH-HcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHH
Q 017781 139 AQLVRRAE-RAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (366)
Q Consensus 139 ~~~l~ra~-~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (366)
.+..+.+. ....+.|.|+++||.. +. .+ .+.+..++. .|..-...+
T Consensus 335 ~kaaq~i~e~~~VDFIDlN~GCPID------lv----------y~---------------qG~GsALl~--rp~rl~~~l 381 (614)
T KOG2333|consen 335 AKAAQVIAETCDVDFIDLNMGCPID------LV----------YR---------------QGGGSALLN--RPARLIRIL 381 (614)
T ss_pred HHHHHHHHhhcceeeeeccCCCChh------ee----------ec---------------cCCcchhhc--CcHHHHHHH
Confidence 55555443 4578999999999952 11 00 011122221 222233456
Q ss_pred HHHHHhcC-CCEEEEeccCHHH-------------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEec
Q 017781 218 KWLQTITK-LPILVKGVLTAED-------------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 283 (366)
Q Consensus 218 ~~lr~~~~-~pv~vK~v~~~~d-------------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G 283 (366)
+......+ +||.||+.....+ .+.|+++|+++++...|-+.-.+.|+.+.++++.+...+|+|++|
T Consensus 382 ~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNG 461 (614)
T KOG2333|consen 382 RAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNG 461 (614)
T ss_pred HHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecC
Confidence 66666564 6999998753321 489999999977665566667789999999999886569999999
Q ss_pred CCCCHHHHHHHHHhC--cCEEEecH-----HHHHH
Q 017781 284 GVRRGTDVFKALALG--ASGIFIGR-----PVVYS 311 (366)
Q Consensus 284 GI~~~~dv~kalalG--Ad~V~igr-----~~l~~ 311 (366)
.|-+-+|=.+-+..+ .+.||||| ||||.
T Consensus 462 Di~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFt 496 (614)
T KOG2333|consen 462 DILSWEDWYERLNQNPNVDSVMIARGALIKPWIFT 496 (614)
T ss_pred ccccHHHHHHHhhcCCCcceEEeeccccccchHhh
Confidence 999999999988866 89999999 77764
No 84
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.00 E-value=1.8e-08 Score=99.41 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHhc--CCCEEEEecc------------CHHH--------HHcCCcEEEEcCCCc-cCCCCCcchHHHHH
Q 017781 211 SLSWKDVKWLQTIT--KLPILVKGVL------------TAED--------VQAGAAGIIVSNHGA-RQLDYVPATIMALE 267 (366)
Q Consensus 211 ~~~~~~i~~lr~~~--~~pv~vK~v~------------~~~d--------~~aGad~I~vs~~gg-~~~~~~~~~~~~l~ 267 (366)
.+..+.|+.+|+.+ +.||.+|... +.++ .++|+|.|.++...- .+...+ ..+....
T Consensus 195 Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~-~~~~~~~ 273 (361)
T cd04747 195 RFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEG-SELNLAG 273 (361)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCc-cchhHHH
Confidence 45678999999998 4799999752 3333 678999999876321 111111 2344556
Q ss_pred HHHHHcCCCceEEEecCC------------------CCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 268 EVVKATQGRIPVFLDGGV------------------RRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 268 ~i~~~~~~~i~vi~~GGI------------------~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
++++.+ ++||++.|+| ++++++.++|+-| ||+|++||++|..
T Consensus 274 ~~k~~~--~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iad 334 (361)
T cd04747 274 WTKKLT--GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSD 334 (361)
T ss_pred HHHHHc--CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhC
Confidence 677766 7999999999 6999999999977 9999999999863
No 85
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.96 E-value=3.2e-09 Score=104.69 Aligned_cols=101 Identities=21% Similarity=0.224 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHhcC------CCEEEEecc--------CHHH--------HHcCCcEEEEcCCCccC--CCCCcchHHHH
Q 017781 211 SLSWKDVKWLQTITK------LPILVKGVL--------TAED--------VQAGAAGIIVSNHGARQ--LDYVPATIMAL 266 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~------~pv~vK~v~--------~~~d--------~~aGad~I~vs~~gg~~--~~~~~~~~~~l 266 (366)
.+..+.++.+|+.++ .||.+|... +.++ .++|+|+|.||..+... ..........+
T Consensus 195 r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~ 274 (353)
T cd04735 195 RFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIM 274 (353)
T ss_pred HHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHH
Confidence 456788999999875 456665432 3344 78899999998743221 11112234455
Q ss_pred HHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 267 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 267 ~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
..+++.+..++|||+.|||++++++.++++.|||+|++||+++..
T Consensus 275 ~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liad 319 (353)
T cd04735 275 ELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVD 319 (353)
T ss_pred HHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhC
Confidence 566666544799999999999999999999999999999999863
No 86
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=98.95 E-value=2e-08 Score=98.99 Aligned_cols=99 Identities=21% Similarity=0.179 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHhcC--CCEEEEec--------cCHHH--------HHcCCcEEEEcC--CCccCCC----CCcc-hHHH
Q 017781 211 SLSWKDVKWLQTITK--LPILVKGV--------LTAED--------VQAGAAGIIVSN--HGARQLD----YVPA-TIMA 265 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~--~pv~vK~v--------~~~~d--------~~aGad~I~vs~--~gg~~~~----~~~~-~~~~ 265 (366)
.+..+.++.+|+.++ .||.+|.. .+.++ .++|+|.|.||. |..+... .... ....
T Consensus 188 r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~ 267 (353)
T cd02930 188 RFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWA 267 (353)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHH
Confidence 456788999999985 46666654 24343 778999999975 2222111 1111 2345
Q ss_pred HHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 266 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 266 l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
..++++.+ ++||+++|+|++..++.++++.| +|+|++||+++..
T Consensus 268 ~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~d 312 (353)
T cd02930 268 TAKLKRAV--DIPVIASNRINTPEVAERLLADGDADMVSMARPFLAD 312 (353)
T ss_pred HHHHHHhC--CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHC
Confidence 56777777 89999999999999999999987 9999999999853
No 87
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.89 E-value=1.9e-08 Score=98.63 Aligned_cols=99 Identities=24% Similarity=0.316 Sum_probs=75.9
Q ss_pred CCCCHHHHHHHHHhc--CCCEEEEec--------cCHHH--------HHcCCcEEEEcCCCccCCCCC---------cc-
Q 017781 210 RSLSWKDVKWLQTIT--KLPILVKGV--------LTAED--------VQAGAAGIIVSNHGARQLDYV---------PA- 261 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~--~~pv~vK~v--------~~~~d--------~~aGad~I~vs~~gg~~~~~~---------~~- 261 (366)
..+..+.|+.+|+.+ +.||.+|.. .+.++ .++|+|.|.||...-.+.... +.
T Consensus 199 ~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~ 278 (338)
T cd04733 199 ARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREA 278 (338)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccch
Confidence 346778999999998 479999975 35554 788999999976422111110 01
Q ss_pred -hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 262 -TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 262 -~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
.++...++++.+ ++||+++|+|.+.+++.++|+.| ||+|++||+++.
T Consensus 279 ~~~~~~~~ik~~v--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 279 YFLEFAEKIRKVT--KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred hhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 145666788877 79999999999999999999987 999999999975
No 88
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=98.88 E-value=3e-08 Score=97.15 Aligned_cols=96 Identities=18% Similarity=0.104 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHhcCC-CEEEEecc-----------CHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHH
Q 017781 211 SLSWKDVKWLQTITKL-PILVKGVL-----------TAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVV 270 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~~-pv~vK~v~-----------~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~ 270 (366)
.+..+.++.+|+.++. ||.+|... +.++ .++|+|.|.||... .........++...+++
T Consensus 203 rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~-~~~~~~~~~~~~~~~ik 281 (338)
T cd02933 203 RFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPR-VAGNPEDQPPDFLDFLR 281 (338)
T ss_pred hHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCC-CCCcccccchHHHHHHH
Confidence 4567889999999854 89999742 3344 77899999996532 11111334567778888
Q ss_pred HHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 271 KATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 271 ~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
+.+ ++|||++|||+ ++++.++|+.| ||+|++||+++.
T Consensus 282 ~~~--~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la 319 (338)
T cd02933 282 KAF--KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred HHc--CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence 888 79999999997 99999999987 999999999975
No 89
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=98.86 E-value=3.3e-08 Score=98.43 Aligned_cols=100 Identities=16% Similarity=0.234 Sum_probs=75.1
Q ss_pred CCCCHHHHHHHHHhc--CCCEEEEecc----------------------CHHH--------HHcCCcEEEEcCCCccCCC
Q 017781 210 RSLSWKDVKWLQTIT--KLPILVKGVL----------------------TAED--------VQAGAAGIIVSNHGARQLD 257 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~--~~pv~vK~v~----------------------~~~d--------~~aGad~I~vs~~gg~~~~ 257 (366)
..+..+.++.+|+.+ +.||.+|... +.++ .++|+|.|.||.....+..
T Consensus 201 ~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~ 280 (382)
T cd02931 201 LRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWY 280 (382)
T ss_pred hHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccc
Confidence 346778999999998 5699999752 3344 6789999999753311111
Q ss_pred C-------Ccch-HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 258 Y-------VPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 258 ~-------~~~~-~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
. .... +.....+++.+ ++||+++|||++++++.++|+.| ||+|++||+++..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~lad 341 (382)
T cd02931 281 WNHPPMYQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLAD 341 (382)
T ss_pred cccCCccCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhC
Confidence 1 1111 34566777777 79999999999999999999987 9999999999863
No 90
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.73 E-value=8.2e-08 Score=90.46 Aligned_cols=93 Identities=26% Similarity=0.391 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccC------------------C-----C-------CCc
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQ------------------L-----D-------YVP 260 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~------------------~-----~-------~~~ 260 (366)
+.+..+|..++.| ++-++.+.++ .+.|+|.|--.+.-|+. + + ...
T Consensus 111 ~~~~~~K~~f~~~-fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~ 189 (293)
T PRK04180 111 EEYHIDKWDFTVP-FVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQ 189 (293)
T ss_pred HHHHHHHHHcCCC-EEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccC
Confidence 5577777777766 4456667776 88899988765432321 0 0 023
Q ss_pred chHHHHHHHHHHcCCCceEE--EecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 261 ATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi--~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+.++.|.++++.. ++||+ +.|||.|++|+.+++.+|||+|++|+.++.
T Consensus 190 ~~~elL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 190 APYELVKEVAELG--RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred CCHHHHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 4678888888876 79998 999999999999999999999999999864
No 91
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.73 E-value=1.1e-06 Score=82.82 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
..+.+.++++.. +.||+++|||++++++.+++..|||+|.+|++++.-+.
T Consensus 186 ~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~ 235 (256)
T TIGR00262 186 LNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKIIE 235 (256)
T ss_pred HHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 456677777665 67999999999999999999999999999999977553
No 92
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=98.71 E-value=2.7e-06 Score=84.25 Aligned_cols=94 Identities=14% Similarity=-0.029 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHhcC-CCEEEEec-----------cCHHH---------HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHH
Q 017781 212 LSWKDVKWLQTITK-LPILVKGV-----------LTAED---------VQAGAAGIIVSNHGARQLDYVPA-TIMALEEV 269 (366)
Q Consensus 212 ~~~~~i~~lr~~~~-~pv~vK~v-----------~~~~d---------~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i 269 (366)
+..+.|+.+|+.++ -+|.+|.. .+.+| .+.|+|+|.||.... ....+ ......++
T Consensus 211 f~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~---~~~~~~~~~~~~~i 287 (362)
T PRK10605 211 LVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDW---AGGEPYSDAFREKV 287 (362)
T ss_pred HHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccc---cCCccccHHHHHHH
Confidence 46688999999984 25888753 23222 668999999986211 11111 22334566
Q ss_pred HHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 270 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 270 ~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
++.+ ++||++.|++ +++.+.++|+.| ||+|++||+++..
T Consensus 288 k~~~--~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iad 327 (362)
T PRK10605 288 RARF--HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIAN 327 (362)
T ss_pred HHHC--CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhC
Confidence 6667 6899999986 899999999998 9999999999863
No 93
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=98.68 E-value=7.2e-07 Score=87.98 Aligned_cols=98 Identities=28% Similarity=0.356 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHhcC--CCEEEEecc---------CHHH--------HHcC-CcEEEEcCCCcc---CCCCC-cc-hHHHH
Q 017781 212 LSWKDVKWLQTITK--LPILVKGVL---------TAED--------VQAG-AAGIIVSNHGAR---QLDYV-PA-TIMAL 266 (366)
Q Consensus 212 ~~~~~i~~lr~~~~--~pv~vK~v~---------~~~d--------~~aG-ad~I~vs~~gg~---~~~~~-~~-~~~~l 266 (366)
+..+.++.+|+.++ .||.++... +.++ .+.| +|.|.++..+.. ..... +. .....
T Consensus 201 f~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a 280 (363)
T COG1902 201 FLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFA 280 (363)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHH
Confidence 35578999999995 589999653 2333 7899 799999874321 11111 11 12334
Q ss_pred HHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 267 EEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 267 ~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
..++..+ .+|||++|+|++++.+.++|+-| ||+|.+|||||..
T Consensus 281 ~~i~~~~--~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~lad 324 (363)
T COG1902 281 ARIKKAV--RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLAD 324 (363)
T ss_pred HHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcC
Confidence 4566655 69999999999999999999998 9999999999863
No 94
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=98.64 E-value=3.9e-07 Score=90.41 Aligned_cols=98 Identities=11% Similarity=0.038 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHHhcC--CCEEEEecc----------CHHH-------HHcCCcEEEEcCCCc----cCCCCCc--chHHH
Q 017781 211 SLSWKDVKWLQTITK--LPILVKGVL----------TAED-------VQAGAAGIIVSNHGA----RQLDYVP--ATIMA 265 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~--~pv~vK~v~----------~~~d-------~~aGad~I~vs~~gg----~~~~~~~--~~~~~ 265 (366)
.+..+.++.+|+.++ .||.+|... +.++ .+..+|.+.+|...- ......+ ..++.
T Consensus 201 Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~ 280 (370)
T cd02929 201 RFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNVGDWANDGEDSRFYPEGHQEPY 280 (370)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEecCCCccccccccccCCccccHHH
Confidence 457789999999985 566666431 2333 444589998875211 0000001 12456
Q ss_pred HHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 266 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 266 l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
..++++.+ ++|||+.|||++++++.++|+.| ||+|++||++|.
T Consensus 281 ~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 281 IKFVKQVT--SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh
Confidence 67777777 79999999999999999999987 999999999985
No 95
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.64 E-value=2.6e-07 Score=99.84 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHhc--CCCEEEEecc--------CHHH--------HHcCCcEEEEcCCCc-c-C-CCCCcc-hHHHHHH
Q 017781 211 SLSWKDVKWLQTIT--KLPILVKGVL--------TAED--------VQAGAAGIIVSNHGA-R-Q-LDYVPA-TIMALEE 268 (366)
Q Consensus 211 ~~~~~~i~~lr~~~--~~pv~vK~v~--------~~~d--------~~aGad~I~vs~~gg-~-~-~~~~~~-~~~~l~~ 268 (366)
.+..+.++.+|+.+ +.||.+|... +.++ .++|+|.|.||..+- . + ...++. ......+
T Consensus 602 r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 681 (765)
T PRK08255 602 RYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADR 681 (765)
T ss_pred HHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHH
Confidence 35678899999987 4799999763 2344 788999999985221 1 1 011111 2334466
Q ss_pred HHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 269 VVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 269 i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
+++.+ ++||++.|+|++++++.++|+.| ||+|++||++|..
T Consensus 682 ik~~~--~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~d 723 (765)
T PRK08255 682 IRNEA--GIATIAVGAISEADHVNSIIAAGRADLCALARPHLAD 723 (765)
T ss_pred HHHHc--CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhC
Confidence 77777 79999999999999999999976 9999999999863
No 96
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.62 E-value=6.7e-07 Score=84.55 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=56.8
Q ss_pred eccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 232 GVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 232 ~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
.+.+.++ .++|+|.|-++|. .+..-.+.++...++.+.+++..++|+.|||.+++|+.+++.+|||+|.+|+.
T Consensus 166 evh~~~E~~~A~~~gadiIgin~r---dl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsa 242 (260)
T PRK00278 166 EVHDEEELERALKLGAPLIGINNR---NLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGES 242 (260)
T ss_pred EeCCHHHHHHHHHcCCCEEEECCC---CcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHH
Confidence 3445554 6778887766432 22222334666677777665567999999999999999999999999999999
Q ss_pred HHHH
Q 017781 308 VVYS 311 (366)
Q Consensus 308 ~l~~ 311 (366)
++.+
T Consensus 243 I~~~ 246 (260)
T PRK00278 243 LMRA 246 (260)
T ss_pred HcCC
Confidence 8753
No 97
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.59 E-value=4.2e-06 Score=74.90 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=65.8
Q ss_pred CCCEEEEeccCHHH----HHcCCcEEEE--cCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC
Q 017781 225 KLPILVKGVLTAED----VQAGAAGIIV--SNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 298 (366)
Q Consensus 225 ~~pv~vK~v~~~~d----~~aGad~I~v--s~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG 298 (366)
..-+++..+.+.|| .++|+|.|-- |++.+....-..+.+++++++.+ . .++||+.|.+.|++++.+++.+|
T Consensus 126 ~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~--~~~vIAEGr~~tP~~Ak~a~~~G 202 (229)
T COG3010 126 PGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-A--GCRVIAEGRYNTPEQAKKAIEIG 202 (229)
T ss_pred CCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-C--CCeEEeeCCCCCHHHHHHHHHhC
Confidence 45688888899998 9999999863 33333222234468888888877 3 79999999999999999999999
Q ss_pred cCEEEecHHHH
Q 017781 299 ASGIFIGRPVV 309 (366)
Q Consensus 299 Ad~V~igr~~l 309 (366)
|++|.+|+++-
T Consensus 203 a~aVvVGsAIT 213 (229)
T COG3010 203 ADAVVVGSAIT 213 (229)
T ss_pred CeEEEECcccC
Confidence 99999998764
No 98
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.53 E-value=8.6e-06 Score=76.31 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHh
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l 312 (366)
..+.+.++++... +.||+++|||++++++.+++..|||++.+|+.++.-+
T Consensus 172 ~~~~i~~lr~~~~-~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~~~ 221 (244)
T PRK13125 172 VERNIKRVRNLVG-NKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIEEL 221 (244)
T ss_pred HHHHHHHHHHhcC-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 3456777776653 4789999999999999999999999999999987644
No 99
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.52 E-value=1.2e-05 Score=76.00 Aligned_cols=48 Identities=25% Similarity=0.364 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 264 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 264 ~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
+.+..+++.. +.||.+.+||++++++.+....|||+|.+|++++.-+.
T Consensus 192 ~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i~ 239 (263)
T CHL00200 192 KLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQILL 239 (263)
T ss_pred HHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHHH
Confidence 3445555544 79999999999999999999999999999999986543
No 100
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.52 E-value=6.5e-06 Score=75.55 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=58.3
Q ss_pred cCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 234 LTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 234 ~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.++++ .+.|+|.+.+++..+.. ..+.++.+.++++.++.++|+++.|||.+++|+.+++.+|||+|.+|++++
T Consensus 129 ~~~~e~~~~~~~g~~~i~~t~~~~~~---~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~ 205 (217)
T cd00331 129 HDEEELERALALGAKIIGINNRDLKT---FEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLM 205 (217)
T ss_pred CCHHHHHHHHHcCCCEEEEeCCCccc---cCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHc
Confidence 45554 77899999876433322 234457778887775447899999999999999999999999999999987
Q ss_pred HH
Q 017781 310 YS 311 (366)
Q Consensus 310 ~~ 311 (366)
..
T Consensus 206 ~~ 207 (217)
T cd00331 206 RA 207 (217)
T ss_pred CC
Confidence 53
No 101
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.47 E-value=2e-06 Score=80.91 Aligned_cols=94 Identities=26% Similarity=0.353 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCC-----------------------------C-CC
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQL-----------------------------D-YV 259 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~-----------------------------~-~~ 259 (366)
.+.+..+|..++.| ++-++.+.++ .+.|+|.|--...|++.. . ..
T Consensus 101 ~~~~~~iK~~~~~l-~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~ 179 (283)
T cd04727 101 DEEHHIDKHKFKVP-FVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEI 179 (283)
T ss_pred HHHHHHHHHHcCCc-EEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccc
Confidence 45688888888665 6677888888 999999998766555431 0 12
Q ss_pred cchHHHHHHHHHHcCCCceEE--EecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 260 PATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 260 ~~~~~~l~~i~~~~~~~i~vi--~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.++.|.++.+.+ ++||+ +.|||.+++++.+++.+||++|++|+.++.
T Consensus 180 ~~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 180 QAPYELVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred CCCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 35778899998877 79997 999999999999999999999999999864
No 102
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.44 E-value=1.3e-05 Score=73.52 Aligned_cols=170 Identities=15% Similarity=0.169 Sum_probs=110.4
Q ss_pred eEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCC-CCccccccccccccCCCccccchhhHHH
Q 017781 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL-PPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (366)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (366)
..+-+....+.+....+++.+.+.|++.+-||+++|..-.-.+.++..+.- | ++.+. ..........+........+
T Consensus 14 ~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p-~~~vG-aGTV~~~~~~~~a~~aGA~F 91 (213)
T PRK06552 14 GVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDP-EVLIG-AGTVLDAVTARLAILAGAQF 91 (213)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCC-CeEEe-eeeCCCHHHHHHHHHcCCCE
Confidence 345566677889999999999999999999999998765556666655521 1 11110 00000000000000111122
Q ss_pred hhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 204 VAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 204 ~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
+. .|.++-+.+++.++ .++|++ =|+.|+.+ .++|+|.|.+.-.. ..| .+.++.++..++ ++|+
T Consensus 92 iv---sP~~~~~v~~~~~~-~~i~~i-PG~~T~~E~~~A~~~Gad~vklFPa~----~~G---~~~ik~l~~~~p-~ip~ 158 (213)
T PRK06552 92 IV---SPSFNRETAKICNL-YQIPYL-PGCMTVTEIVTALEAGSEIVKLFPGS----TLG---PSFIKAIKGPLP-QVNV 158 (213)
T ss_pred EE---CCCCCHHHHHHHHH-cCCCEE-CCcCCHHHHHHHHHcCCCEEEECCcc----cCC---HHHHHHHhhhCC-CCEE
Confidence 22 35566677777665 477754 47788887 88999999984311 112 344555555553 6999
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
++.|||. .+++...+++||++|.+|+.++.
T Consensus 159 ~atGGI~-~~N~~~~l~aGa~~vavgs~l~~ 188 (213)
T PRK06552 159 MVTGGVN-LDNVKDWFAAGADAVGIGGELNK 188 (213)
T ss_pred EEECCCC-HHHHHHHHHCCCcEEEEchHHhC
Confidence 9999996 79999999999999999999854
No 103
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.40 E-value=5.5e-06 Score=76.42 Aligned_cols=89 Identities=21% Similarity=0.191 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCCCEEEEec-----cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 214 WKDVKWLQTITKLPILVKGV-----LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v-----~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
.+.++.+++.. .|+.+|.+ ++.++ .++|+|+|..|...+ .+..+.+.+..+++.++++++|.
T Consensus 109 ~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~----~~gat~~~v~~m~~~~~~~~~IK 183 (221)
T PRK00507 109 EADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGFS----TGGATVEDVKLMRETVGPRVGVK 183 (221)
T ss_pred HHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHhCCCceEE
Confidence 34677777755 47899985 34443 899999887665321 23367777777778887789999
Q ss_pred EecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 281 LDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 281 ~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
++|||++.+|+.+.+.+||+.++..+.
T Consensus 184 asGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 184 ASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred eeCCcCCHHHHHHHHHcCcceEccCcH
Confidence 999999999999999999999977653
No 104
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.40 E-value=2.6e-05 Score=72.96 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
..+.+.++++.. ++||+++|||++.+++.++... ||+|.+|+.++.-+.
T Consensus 175 ~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~~ 223 (242)
T cd04724 175 LKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKIIE 223 (242)
T ss_pred HHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHHHH
Confidence 345566666654 7999999999999999999999 999999999876553
No 105
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.39 E-value=4.7e-05 Score=69.58 Aligned_cols=169 Identities=15% Similarity=0.180 Sum_probs=106.0
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhh
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
.+-+....+.+...+.++.+.+.|++.+-+|.+.|..-...+.++..+..+.-+...++-. ....+........++.
T Consensus 12 ~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~---~~~~~~a~~aGA~fiv 88 (206)
T PRK09140 12 LIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLS---PEQVDRLADAGGRLIV 88 (206)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCC---HHHHHHHHHcCCCEEE
Confidence 3444556788888889999999999999999998865445566665553211000000000 0000000000011111
Q ss_pred hccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 206 ~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
-|..+.+.++..+ ..+.|++. ++.|+++ .++|+|+|.+.-. ....++.+.++++.++.++|+++
T Consensus 89 ---sp~~~~~v~~~~~-~~~~~~~~-G~~t~~E~~~A~~~Gad~vk~Fpa-------~~~G~~~l~~l~~~~~~~ipvva 156 (206)
T PRK09140 89 ---TPNTDPEVIRRAV-ALGMVVMP-GVATPTEAFAALRAGAQALKLFPA-------SQLGPAGIKALRAVLPPDVPVFA 156 (206)
T ss_pred ---CCCCCHHHHHHHH-HCCCcEEc-ccCCHHHHHHHHHcCCCEEEECCC-------CCCCHHHHHHHHhhcCCCCeEEE
Confidence 2334455555554 44666554 5888877 8899999987331 11235667777666643699999
Q ss_pred ecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 282 DGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 282 ~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.||| +.+++...+++||++|.+++.++.
T Consensus 157 iGGI-~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 157 VGGV-TPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred ECCC-CHHHHHHHHHCCCeEEEEehHhcc
Confidence 9999 889999999999999999999864
No 106
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.37 E-value=1.4e-05 Score=74.51 Aligned_cols=69 Identities=26% Similarity=0.388 Sum_probs=56.2
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|++.|.+.+....... ....++.+.++++.+ ++||++.|||++.+|+.+++.+||++|++|+.++.
T Consensus 159 ~~~G~~~i~~~~~~~~g~~-~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 159 EELGAGSILFTNVDVEGLL-EGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred HHcCCCEEEEEeecCCCCc-CCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 6789999998764211111 235788899998887 79999999999999999998999999999999865
No 107
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.36 E-value=4.6e-06 Score=78.57 Aligned_cols=94 Identities=26% Similarity=0.326 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCC---------------------C----------C
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQL---------------------D----------Y 258 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~---------------------~----------~ 258 (366)
.+.+..+|+.++.| ++-++.+.++ .+.|+|.|--.+.||+.. . .
T Consensus 103 de~~~~~K~~f~vp-fmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~ 181 (287)
T TIGR00343 103 DWTFHIDKKKFKVP-FVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKE 181 (287)
T ss_pred HHHHHHHHHHcCCC-EEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcc
Confidence 45578888888777 5567778887 999999998776665431 0 0
Q ss_pred CcchHHHHHHHHHHcCCCceEE--EecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 259 VPATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 259 ~~~~~~~l~~i~~~~~~~i~vi--~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
-.+.++.|.++++.. ++||+ +.|||.|++|+.+++.+|||+|.+|+.++.
T Consensus 182 ~~~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 182 LRVPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred cCCCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 125678888888866 79998 999999999999999999999999999864
No 108
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.36 E-value=3.4e-06 Score=77.99 Aligned_cols=70 Identities=26% Similarity=0.384 Sum_probs=56.5
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.+.|++.+++..........+ ..++.+.++++.+ ++||++.|||++.+|+.+++..|||+|++|+.++.+
T Consensus 155 ~~~g~~~ii~~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 155 EELGLEGIIYTDISRDGTLSG-PNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HhCCCCEEEEEeecCCCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 778999888764322112233 4688888888876 799999999999999999999999999999999764
No 109
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.32 E-value=4.1e-06 Score=79.16 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=59.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHH-HhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kal-alGAd~V~igr~~l~~ 311 (366)
.+.|++.+++.+...-+...| +.++.+.++.+.+ ++|||++|||++.+|+.+++ ..|+++|.+|++|.|.
T Consensus 162 ~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 162 EALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred HHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 799999999875432223345 4889999998887 79999999999999999999 7999999999999884
No 110
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.31 E-value=7.9e-05 Score=70.37 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
..+.+.++++.. ++||++.+||++++|+.+++.. ||+|.+|++|+..+.
T Consensus 188 ~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~~~ 236 (258)
T PRK13111 188 LAELVARLKAHT--DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKIIE 236 (258)
T ss_pred HHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHHHH
Confidence 445778888765 7999999999999999999976 999999999987654
No 111
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.30 E-value=6.3e-06 Score=76.27 Aligned_cols=70 Identities=24% Similarity=0.345 Sum_probs=58.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.+.|++.+++....-.+...+ +.++.+.++++.+ ++||++.|||++.+|+.+++..||++|++||.++.+
T Consensus 156 ~~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~ 225 (234)
T cd04732 156 EELGVKAIIYTDISRDGTLSG-PNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEG 225 (234)
T ss_pred HHcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 788999999875322112234 6788999998887 799999999999999999999999999999998764
No 112
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.28 E-value=5.6e-06 Score=89.26 Aligned_cols=138 Identities=27% Similarity=0.276 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHhc-----CCCEEEEeccC-----HHH--HHcCCcEEEEcCC-CccCC------CCCcchHHH-HHHHHH
Q 017781 212 LSWKDVKWLQTIT-----KLPILVKGVLT-----AED--VQAGAAGIIVSNH-GARQL------DYVPATIMA-LEEVVK 271 (366)
Q Consensus 212 ~~~~~i~~lr~~~-----~~pv~vK~v~~-----~~d--~~aGad~I~vs~~-gg~~~------~~~~~~~~~-l~~i~~ 271 (366)
++.++++++.-.. .-.|.||.+.- +.. .++.||.|.||+| ||+.. ...-.+|+. |.|..+
T Consensus 1080 YSIEDLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQ 1159 (2142)
T KOG0399|consen 1080 YSIEDLAQLIYDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQ 1159 (2142)
T ss_pred ccHHHHHHHHHHhhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhh
Confidence 4667766655332 34689997742 222 8888999999999 44321 111123432 344433
Q ss_pred H-----cCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhc--------------------------C-HHH
Q 017781 272 A-----TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE--------------------------G-EKG 319 (366)
Q Consensus 272 ~-----~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~--------------------------G-~~g 319 (366)
. +++++-+-.||+++||.||+-|-++||+-.++++.-|.++.|- | ++-
T Consensus 1160 tLv~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~Peh 1239 (2142)
T KOG0399|consen 1160 TLVLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEH 1239 (2142)
T ss_pred HHhhccccccEEEEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHH
Confidence 2 4568889999999999999999999999999999777776542 3 356
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017781 320 VRRVLEMLREEFELAMALSGCRSLKEITRD 349 (366)
Q Consensus 320 v~~~~~~l~~el~~~m~~~G~~~l~el~~~ 349 (366)
|.+++-.+.+|++..|..+|+++++|+-++
T Consensus 1240 vVNff~yvaEEvR~imakLGfrtldemvGr 1269 (2142)
T KOG0399|consen 1240 VVNFFFYVAEEVRGIMAKLGFRTLDEMVGR 1269 (2142)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchHHHHhcc
Confidence 889999999999999999999999999755
No 113
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.27 E-value=2.3e-06 Score=80.04 Aligned_cols=70 Identities=26% Similarity=0.347 Sum_probs=58.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh---CcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal---GAd~V~igr~~l~~ 311 (366)
.+.|++.+++++...-+...|+ .++.+.++.+.+ ++|||++|||++.+|+.+++.+ |||+|++||+++.+
T Consensus 156 ~~~G~~~iiv~~~~~~g~~~G~-d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g 228 (241)
T PRK14024 156 DSAGCSRYVVTDVTKDGTLTGP-NLELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAG 228 (241)
T ss_pred HhcCCCEEEEEeecCCCCccCC-CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcC
Confidence 6889999999865433334454 899999999887 7999999999999999998754 99999999999864
No 114
>PLN02591 tryptophan synthase
Probab=98.27 E-value=0.00011 Score=68.94 Aligned_cols=48 Identities=25% Similarity=0.389 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHh
Q 017781 263 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 263 ~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l 312 (366)
.+.+.++++.. ++||+.--||++++|+.+++..|||+|.+|++++..+
T Consensus 178 ~~~i~~vk~~~--~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i 225 (250)
T PLN02591 178 ESLLQELKEVT--DKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKAL 225 (250)
T ss_pred HHHHHHHHhcC--CCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhh
Confidence 34577777654 8999998899999999999999999999999998754
No 115
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.24 E-value=4.9e-05 Score=68.42 Aligned_cols=166 Identities=17% Similarity=0.180 Sum_probs=98.0
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhh
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
.+-+....+.+...++++.+.+.|++.+.++...+..-.-.+.++..++ ...+...++. ..............++.
T Consensus 6 ~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~-~~~iGag~v~---~~~~~~~a~~~Ga~~i~ 81 (190)
T cd00452 6 LVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFP-EALIGAGTVL---TPEQADAAIAAGAQFIV 81 (190)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCC-CCEEEEEeCC---CHHHHHHHHHcCCCEEE
Confidence 3445556778888888888888999999998876642222233333331 0000000000 00000000000001111
Q ss_pred hccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 206 ~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
-+..+.+.++.. +..+.|+++ ++.|.++ .++|+|.|.+... .+...+.+..+++..+ .+|+++
T Consensus 82 ---~p~~~~~~~~~~-~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~~-~~p~~a 148 (190)
T cd00452 82 ---SPGLDPEVVKAA-NRAGIPLLP-GVATPTEIMQALELGADIVKLFPA-------EAVGPAYIKALKGPFP-QVRFMP 148 (190)
T ss_pred ---cCCCCHHHHHHH-HHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhCC-CCeEEE
Confidence 122233444444 446777766 7778887 8899999988431 1123455666655443 589999
Q ss_pred ecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 282 DGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 282 ~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.||| +.+++.+.+.+||++|.+++.+.
T Consensus 149 ~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 149 TGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred eCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 9999 99999999999999999999876
No 116
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.23 E-value=4.8e-06 Score=77.78 Aligned_cols=70 Identities=19% Similarity=0.280 Sum_probs=56.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh-CcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal-GAd~V~igr~~l~~ 311 (366)
.+.|+|.|.+++........+ ..++.+.++.+.+ ++|||++|||++.+|+.+++.. |||+|++||++..+
T Consensus 159 ~~~G~d~i~v~~i~~~g~~~g-~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~ 229 (243)
T cd04731 159 EELGAGEILLTSMDRDGTKKG-YDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFG 229 (243)
T ss_pred HHCCCCEEEEeccCCCCCCCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcC
Confidence 678999999976321111112 3678888888776 8999999999999999999997 99999999999764
No 117
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.19 E-value=2.7e-05 Score=70.67 Aligned_cols=90 Identities=21% Similarity=0.258 Sum_probs=64.0
Q ss_pred HHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccC-C-CCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 217 VKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQ-L-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 217 i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~-~-~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
++.+|+..+ ..|.+ .+.+.++ .++|+|+|.++....+. . ...+..++.+.++.+.+ ++||++.||| +.+
T Consensus 86 ~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~ 161 (201)
T PRK07695 86 VRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPE 161 (201)
T ss_pred HHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 345555542 33444 4556666 68999999765422221 1 11233567788887766 7999999999 999
Q ss_pred HHHHHHHhCcCEEEecHHHHH
Q 017781 290 DVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l~ 310 (366)
++.+++.+||++|++|+.+..
T Consensus 162 ~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 162 NTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred HHHHHHHcCCCEEEEEHHHhc
Confidence 999999999999999999875
No 118
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=98.19 E-value=7e-06 Score=80.67 Aligned_cols=98 Identities=24% Similarity=0.311 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHhc--CCCEEEEeccC--------HHH--------HHcCCcEEEEcCCCcc------C-CC--CCc-chH
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGVLT--------AED--------VQAGAAGIIVSNHGAR------Q-LD--YVP-ATI 263 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v~~--------~~d--------~~aGad~I~vs~~gg~------~-~~--~~~-~~~ 263 (366)
+..+.|+.+|+.+ +.||.+|.... .+| .++|+|.+.++...+. . .. ..+ ..+
T Consensus 201 f~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (341)
T PF00724_consen 201 FLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNL 280 (341)
T ss_dssp HHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTH
T ss_pred HHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhh
Confidence 4678899999997 57899996531 122 6778888876532211 0 01 111 123
Q ss_pred HHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 264 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 264 ~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
.....+++.+ ++|||+.|||++++.+.++++.| ||+|++||+++..
T Consensus 281 ~~a~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~lad 327 (341)
T PF00724_consen 281 DLAEAIKKAV--KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLAD 327 (341)
T ss_dssp HHHHHHHHHH--SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-
T ss_pred hhhhhhhhhc--CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhC
Confidence 4556677777 79999999999999999999988 9999999999863
No 119
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.18 E-value=1.1e-05 Score=74.67 Aligned_cols=68 Identities=19% Similarity=0.354 Sum_probs=54.0
Q ss_pred HHcCCcEEEEcCCC-ccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|++.|-.-+.. |.. .|....+.+..+++.. ++|||++|||.+++|+.+++.+|||+|++|+++..
T Consensus 141 ~~~G~~~vmPlg~pIGsg--~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 141 EDAGCAAVMPLGSPIGSG--QGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred HHcCCCEeCCCCcCCCCC--CCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 89999999542210 111 2555677888887765 79999999999999999999999999999998864
No 120
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=98.17 E-value=2.7e-05 Score=71.30 Aligned_cols=88 Identities=26% Similarity=0.287 Sum_probs=64.4
Q ss_pred CHHHHHHHHHhcCCCEEEEec-----cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 213 SWKDVKWLQTITKLPILVKGV-----LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-----~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
..++++++++..+ .+.+|.+ ++.++ .++|+|+|..|...+ .+..+.+.+..+++.++++++|
T Consensus 104 v~~ei~~i~~~~~-g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~----~~gat~~dv~~m~~~v~~~v~I 178 (211)
T TIGR00126 104 VYDDIRAVVEACA-GVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG----AGGATVEDVRLMRNTVGDTIGV 178 (211)
T ss_pred HHHHHHHHHHHcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHHhccCCeE
Confidence 4567888888764 3445544 34343 999999999875321 1235666666666677678999
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
-++||||+.+|+++.+.+||+-++..
T Consensus 179 KaaGGirt~~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 179 KASGGVRTAEDAIAMIEAGASRIGAS 204 (211)
T ss_pred EEeCCCCCHHHHHHHHHHhhHHhCcc
Confidence 99999999999999999999988654
No 121
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.16 E-value=7e-06 Score=81.09 Aligned_cols=92 Identities=18% Similarity=0.316 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeccCH---HH-----HHcCCcEEEEcCCCccCCC-CCcchHHHHHHHHHHcCCCceE
Q 017781 209 DRSLSWKDVKWLQTITKLPILVKGVLTA---ED-----VQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~pv~vK~v~~~---~d-----~~aGad~I~vs~~gg~~~~-~~~~~~~~l~~i~~~~~~~i~v 279 (366)
++++..+.++++|+. .+.+|...++ .+ .++|+|.|+++++.-.|.+ .+...+..+.++.+.+ ++||
T Consensus 117 ~p~l~~~ii~~vr~a---~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPV 191 (369)
T TIGR01304 117 KPELLGERIAEVRDS---GVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPV 191 (369)
T ss_pred ChHHHHHHHHHHHhc---ceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCE
Confidence 444555678888885 2788877543 23 8999999999875422322 2223456677777776 7999
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
|+ |+|.+.+++.+++.+|||+|++|+
T Consensus 192 I~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 192 IA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred EE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 98 999999999999999999999885
No 122
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.15 E-value=6.5e-06 Score=76.18 Aligned_cols=70 Identities=27% Similarity=0.371 Sum_probs=56.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
.+.|++.|.+.....-+...| +.++.+.++.+.+ .+|||++|||++.+|+.+++..| |++|++||+++++
T Consensus 156 ~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 156 EDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred HhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 677999887764321112234 5789999998887 69999999999999999999998 9999999999864
No 123
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=98.13 E-value=4.9e-05 Score=69.36 Aligned_cols=90 Identities=22% Similarity=0.265 Sum_probs=69.5
Q ss_pred CHHHHHHHHHhcCCCEEEEec-----cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 213 SWKDVKWLQTITKLPILVKGV-----LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-----~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
..++|+.+++..+-++.+|.+ ++.++ .++|+|+|.-|.... .+..+.+.+.-.++.+++++.|
T Consensus 111 V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~----~~gAT~edv~lM~~~vg~~vgv 186 (228)
T COG0274 111 VEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFS----AGGATVEDVKLMKETVGGRVGV 186 (228)
T ss_pred HHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHhccCcee
Confidence 345688888888666888966 34444 999999999876322 3446777777777777778999
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
=++|||||.+|+.+++.+||.-++..+
T Consensus 187 KaSGGIrt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 187 KASGGIRTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred eccCCcCCHHHHHHHHHHhHHHhcccc
Confidence 999999999999999999977665544
No 124
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.12 E-value=1.7e-05 Score=73.41 Aligned_cols=67 Identities=21% Similarity=0.407 Sum_probs=53.4
Q ss_pred HHcCCcEEEEcC--CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|+|.|-.-+ -| .. .|....+.+..+++.. ++|||++|||.+++|+.+++.+|||+|++++.+..
T Consensus 141 ~~~G~~~vmPlg~pIG-sg--~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 141 EEAGCAAVMPLGAPIG-SG--LGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred HHcCCCEeCCCCcCCC-CC--CCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 899999995411 12 11 2455567788887765 79999999999999999999999999999998864
No 125
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.09 E-value=1.7e-05 Score=74.60 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=56.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh-CcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal-GAd~V~igr~~l~~ 311 (366)
.+.|++.++++.+.......++ .++.+.++.+.+ ++|||++|||++.+|+.+++.. ||++|++|+.|.++
T Consensus 163 ~~~g~~~ii~~~i~~~g~~~g~-d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 163 EELGAGEILLTSMDRDGTKNGY-DLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred HHcCCCEEEEcCCcCCCCCCCc-CHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 6789999998764321111233 688889988877 7999999999999999999975 99999999998764
No 126
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=4.5e-05 Score=74.96 Aligned_cols=202 Identities=20% Similarity=0.228 Sum_probs=131.4
Q ss_pred cccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCC--CCHHHHh---------------------ccCC--
Q 017781 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SSVEEVA---------------------STGP-- 122 (366)
Q Consensus 68 ~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~--~~~e~i~---------------------~~~~-- 122 (366)
..+.+-+++|||- . -|+.++...|-++|.-++-+...- .-++-+. ...|
T Consensus 7 l~y~nk~iLApMv--r----~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e 80 (477)
T KOG2334|consen 7 LFYRNKLILAPMV--R----AGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAE 80 (477)
T ss_pred hhhcCcEeeehHH--H----hccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhh
Confidence 3456778999993 1 258889999999999888654210 0111110 0011
Q ss_pred -CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhH
Q 017781 123 -GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (366)
Q Consensus 123 -~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (366)
....||+- -.+.+...+..+. .......+.+++.||-. |..-.++ +
T Consensus 81 ~~rlilQ~g-T~sa~lA~e~A~l-v~nDvsgidiN~gCpK~----------fSi~~gm---------------------g 127 (477)
T KOG2334|consen 81 NSRLILQIG-TASAELALEAAKL-VDNDVSGIDINMGCPKE----------FSIHGGM---------------------G 127 (477)
T ss_pred cCeEEEEec-CCcHHHHHHHHHH-hhcccccccccCCCCCc----------cccccCC---------------------C
Confidence 24567764 3455554433332 23456678899999842 2211111 1
Q ss_pred HHhhhccCCCCCHHHHHHHHHhcCCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHH
Q 017781 202 AYVAGQIDRSLSWKDVKWLQTITKLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 271 (366)
Q Consensus 202 ~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~ 271 (366)
..+. .+++....++..+.+..++|+..|.. .+.+| ...|+.+|.|+.+..-.-..-+.+.+.+.+++.
T Consensus 128 aalL--t~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~ 205 (477)
T KOG2334|consen 128 AALL--TDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQ 205 (477)
T ss_pred chhh--cCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHH
Confidence 1111 24555567889999989999999987 35555 788999999876431111234667888999998
Q ss_pred HcCCCceEEEecCCCC---HHHHHHHHH-hCcCEEEecHHHHHH
Q 017781 272 ATQGRIPVFLDGGVRR---GTDVFKALA-LGASGIFIGRPVVYS 311 (366)
Q Consensus 272 ~~~~~i~vi~~GGI~~---~~dv~kala-lGAd~V~igr~~l~~ 311 (366)
.++ .+|||+.||.++ ..|+.+.-. .|++.||+.|...+.
T Consensus 206 ~~~-~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n 248 (477)
T KOG2334|consen 206 ACQ-MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESN 248 (477)
T ss_pred Hhc-cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcC
Confidence 884 399999999999 899998887 799999999976554
No 127
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=98.06 E-value=9e-05 Score=67.48 Aligned_cols=87 Identities=26% Similarity=0.301 Sum_probs=60.1
Q ss_pred CHHHHHHHHHhcCCCEEEEec-----cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 213 SWKDVKWLQTITKLPILVKGV-----LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-----~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
.++++.++++..+ ++.+|.+ ++.+. .++|+|+|..+. |.. ....+.+.+..+++.++.++||
T Consensus 103 ~~~ei~~v~~~~~-g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsT-G~~---~~~at~~~v~~~~~~~~~~v~i 177 (203)
T cd00959 103 VYEEIAAVVEACG-GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTST-GFG---PGGATVEDVKLMKEAVGGRVGV 177 (203)
T ss_pred HHHHHHHHHHhcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCC-CCC---CCCCCHHHHHHHHHHhCCCceE
Confidence 4567788887764 3334433 34333 999999999873 211 1224555554555555558999
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEe
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~i 304 (366)
-++|||++.+++++.+.+||+-++.
T Consensus 178 k~aGGikt~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 178 KAAGGIRTLEDALAMIEAGATRIGT 202 (203)
T ss_pred EEeCCCCCHHHHHHHHHhChhhccC
Confidence 9999999999999999999987653
No 128
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.06 E-value=1.4e-05 Score=74.12 Aligned_cols=68 Identities=25% Similarity=0.250 Sum_probs=54.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHH-HHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK-ALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k-alalGAd~V~igr~~l 309 (366)
.++|+|.|++++........+ +.++.+.++++.+ ++||+++|||++.+|+.+ ....|||+|++|++|-
T Consensus 163 ~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 163 EQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231 (232)
T ss_pred HHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence 688999999987432212223 3688899998877 799999999999999999 5558999999999874
No 129
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.05 E-value=7.6e-05 Score=67.95 Aligned_cols=168 Identities=14% Similarity=0.120 Sum_probs=108.2
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhh
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
.+-+....+.+...++++.+.+.|++.+.||+++|..-.-.+.++..+ |. +.+- ..........+.......+++.
T Consensus 10 liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~--~~-~~vG-AGTVl~~~~a~~a~~aGA~Fiv 85 (204)
T TIGR01182 10 IVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEV--PD-ALIG-AGTVLNPEQLRQAVDAGAQFIV 85 (204)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHC--CC-CEEE-EEeCCCHHHHHHHHHcCCCEEE
Confidence 455566778888889999999999999999999987555455665554 21 1110 0000000000000001111222
Q ss_pred hccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 206 ~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.|.++.+.+++.++ .++|++- |++|+.| .++|+|.|.+.-.+ .-+|+..+. .++.-+ .+++++.
T Consensus 86 ---sP~~~~~v~~~~~~-~~i~~iP-G~~TptEi~~A~~~Ga~~vKlFPA~---~~GG~~yik---al~~pl-p~i~~~p 153 (204)
T TIGR01182 86 ---SPGLTPELAKHAQD-HGIPIIP-GVATPSEIMLALELGITALKLFPAE---VSGGVKMLK---ALAGPF-PQVRFCP 153 (204)
T ss_pred ---CCCCCHHHHHHHHH-cCCcEEC-CCCCHHHHHHHHHCCCCEEEECCch---hcCCHHHHH---HHhccC-CCCcEEe
Confidence 35566677777665 4887655 8889988 99999999987532 112344433 333334 3799999
Q ss_pred ecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 282 DGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 282 ~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+|||.- +++...|++||.+|++|+.+..
T Consensus 154 tGGV~~-~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 154 TGGINL-ANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred cCCCCH-HHHHHHHhCCCEEEEEChhhcC
Confidence 999954 8999999999999999998763
No 130
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.03 E-value=0.00079 Score=63.34 Aligned_cols=150 Identities=20% Similarity=0.294 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCC--CccccccccccccCCCccccchhhHHHhhhccCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP--PFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (366)
.+.+.+.+.++.+.+.|+++|-+.+ |.. =| .|.+. . .+....+......
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGv--PfS------------DPvADGP~I-----------q----~A~~rAL~~g~t~ 78 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGV--PFS------------DPVADGPTI-----------Q----AAHLRALAAGVTL 78 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecC--CCC------------CcCccCHHH-----------H----HHHHHHHHCCCCH
Confidence 4678899999999999999998754 321 01 01110 0 0111222221222
Q ss_pred CCCHHHHHHHHHh-cCCCEEEEeccCH------HH-----HHcCCcEEEEcC---------------CCcc--------C
Q 017781 211 SLSWKDVKWLQTI-TKLPILVKGVLTA------ED-----VQAGAAGIIVSN---------------HGAR--------Q 255 (366)
Q Consensus 211 ~~~~~~i~~lr~~-~~~pv~vK~v~~~------~d-----~~aGad~I~vs~---------------~gg~--------~ 255 (366)
...++.++.+|+. .++|+++=.-.++ +. .++|+|++.+-- ||=. .
T Consensus 79 ~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt 158 (265)
T COG0159 79 EDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTT 158 (265)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 3357788899865 5789887654333 22 788888888732 1100 0
Q ss_pred -----------------------CCCCc-----chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHH
Q 017781 256 -----------------------LDYVP-----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 256 -----------------------~~~~~-----~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~ 307 (366)
..+.. ...+.+..+++.. ++||.+-=||++++++.+.... ||+|.+|++
T Consensus 159 ~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSA 235 (265)
T COG0159 159 PDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSA 235 (265)
T ss_pred CHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHH
Confidence 00111 1234555555555 8999997799999999999999 999999999
Q ss_pred HHHHhhh
Q 017781 308 VVYSLAA 314 (366)
Q Consensus 308 ~l~~l~~ 314 (366)
++..+..
T Consensus 236 iV~~i~~ 242 (265)
T COG0159 236 IVKIIEE 242 (265)
T ss_pred HHHHHHh
Confidence 9886543
No 131
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.01 E-value=0.0005 Score=61.23 Aligned_cols=168 Identities=20% Similarity=0.103 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHcCCceecCCCCCCCHHHHhccCC---CceEEEeeecC---CHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 89 GEYATARAASAAGTIMTLSSWSTSSVEEVASTGP---GIRFFQLYVYK---DRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 89 ~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~---~~~~~Qly~~~---d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
.-..+++.+.+.|+...+-.. ..++.+.+..+ .+.+.++..+. ..+...+.+++++++|++++.+.... .
T Consensus 14 ~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~--~ 89 (201)
T cd00945 14 DIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINI--G 89 (201)
T ss_pred HHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccH--H
Confidence 345788888888887654332 22344433322 24455554221 14667778899999999999875321 0
Q ss_pred cchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHh--cCCCEEEEecc----CH
Q 017781 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI--TKLPILVKGVL----TA 236 (366)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~--~~~pv~vK~v~----~~ 236 (366)
+. | ..+.....+.++.+++. .++|++++... +.
T Consensus 90 ----------~~-~------------------------------~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~ 128 (201)
T cd00945 90 ----------SL-K------------------------------EGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTA 128 (201)
T ss_pred ----------HH-h------------------------------CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCH
Confidence 00 0 00012234567777777 48999999863 44
Q ss_pred HH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 237 ED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 237 ~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
+. .+.|+|+|..+.... .+...+..+.++++..+.++++++.||+.+.+++..++.+||+++.+|
T Consensus 129 ~~~~~~~~~~~~~g~~~iK~~~~~~----~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 129 DEIAKAARIAAEAGADFIKTSTGFG----GGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 43 468999998765211 122355667777766654689999999999999999999999999875
No 132
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.01 E-value=0.00018 Score=66.40 Aligned_cols=169 Identities=13% Similarity=0.141 Sum_probs=108.0
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcC--CCCccccccccccccCCCccccchhhHHH
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT--LPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (366)
.+-+....+.+...++++.+.+.|++.+-||.++|..-...+.++..+. .|. +.+. ..........+.......++
T Consensus 17 vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~-~~vG-aGTVl~~e~a~~a~~aGA~F 94 (222)
T PRK07114 17 MVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPG-MILG-VGSIVDAATAALYIQLGANF 94 (222)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCC-eEEe-eEeCcCHHHHHHHHHcCCCE
Confidence 4455667889999999999999999999999999876555555553331 221 1100 00000000000000111112
Q ss_pred hhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 204 VAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 204 ~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
+. .|.++-+.++..++. ++| ++=|++|+.| .++|+|.|.+.-.+ ..|+.. ++.+..-+ .++++
T Consensus 95 iV---sP~~~~~v~~~~~~~-~i~-~iPG~~TpsEi~~A~~~Ga~~vKlFPA~----~~G~~~---ikal~~p~-p~i~~ 161 (222)
T PRK07114 95 IV---TPLFNPDIAKVCNRR-KVP-YSPGCGSLSEIGYAEELGCEIVKLFPGS----VYGPGF---VKAIKGPM-PWTKI 161 (222)
T ss_pred EE---CCCCCHHHHHHHHHc-CCC-EeCCCCCHHHHHHHHHCCCCEEEECccc----ccCHHH---HHHHhccC-CCCeE
Confidence 22 355667778877764 776 4457888887 99999999987532 123333 33333333 37999
Q ss_pred EEecCCCC-HHHHHHHHHhCcCEEEecHHHH
Q 017781 280 FLDGGVRR-GTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 280 i~~GGI~~-~~dv~kalalGAd~V~igr~~l 309 (366)
+.+|||.- .+++...+.+||.+|++|+.+.
T Consensus 162 ~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 162 MPTGGVEPTEENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred EeCCCCCcchhcHHHHHhCCCEEEEEChhhc
Confidence 99999985 5899999999999999999875
No 133
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.00 E-value=0.00011 Score=69.09 Aligned_cols=164 Identities=25% Similarity=0.335 Sum_probs=88.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHHhh---hcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHH
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKN---RFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (366)
.++.+.-++.|+.+|-|-.|....+....|++. .+.+|. -.+.+- +....+.+....|+...+. ...-++.+
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~Pv--L~KDFI-id~~QI~eA~~~GADaVLL--I~~~L~~~ 145 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPV--LRKDFI-IDPYQIYEARAAGADAVLL--IAAILSDD 145 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-E--EEES----SHHHHHHHHHTT-SEEEE--EGGGSGHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCc--ccccCC-CCHHHHHHHHHcCCCEeeh--hHHhCCHH
Confidence 445666778999999998888877766666553 233331 111110 0000000000001000000 01122333
Q ss_pred HHHHHHHh---cCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 216 DVKWLQTI---TKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 216 ~i~~lr~~---~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.++++-+. .++-.+| .+.+.++ .++|++.|-|.|+. +..-...+....++...++.++.+|+.+||.+.
T Consensus 146 ~l~~l~~~a~~lGle~lV-EVh~~~El~~al~~~a~iiGINnRd---L~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~ 221 (254)
T PF00218_consen 146 QLEELLELAHSLGLEALV-EVHNEEELERALEAGADIIGINNRD---LKTFEVDLNRTEELAPLIPKDVIVISESGIKTP 221 (254)
T ss_dssp HHHHHHHHHHHTT-EEEE-EESSHHHHHHHHHTT-SEEEEESBC---TTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSH
T ss_pred HHHHHHHHHHHcCCCeEE-EECCHHHHHHHHHcCCCEEEEeCcc---ccCcccChHHHHHHHhhCccceeEEeecCCCCH
Confidence 33444333 3554443 4556666 78889888887753 222223344445666666667899999999999
Q ss_pred HHHHHHHHhCcCEEEecHHHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~~ 311 (366)
+|+.+...+|+|+|.||+.+|.+
T Consensus 222 ~d~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 222 EDARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp HHHHHHCTTT-SEEEESHHHHTS
T ss_pred HHHHHHHHCCCCEEEECHHHhCC
Confidence 99999999999999999999864
No 134
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.99 E-value=2.5e-05 Score=73.54 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=56.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~ 311 (366)
.++|+|.|.++.... ......+.++.+.++++.+ ++|||++|||++.+|+.+++..| ||+|++|+.+..+
T Consensus 165 ~~~G~~~iivt~i~~-~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 165 EKLGAGEILLTSMDK-DGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred HHcCCCEEEEeCcCc-ccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 678999999865321 1112335678888888877 79999999999999999999988 9999999998653
No 135
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.97 E-value=8.1e-05 Score=67.98 Aligned_cols=181 Identities=19% Similarity=0.269 Sum_probs=113.8
Q ss_pred HHHHHHHHcCCceecCCCCCCCHHHHhcc---CCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHH
Q 017781 92 ATARAASAAGTIMTLSSWSTSSVEEVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (366)
Q Consensus 92 ~la~aa~~~G~~~~vs~~~~~~~e~i~~~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d 168 (366)
-+.+.|++.-+|++++.. -.++|++.+. ......++----.+++.+.+ .++..|..++++.+|+... .
T Consensus 65 vv~r~A~~vfiPltVGGG-I~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~---~a~~FGsQciVvaIDakr~----~- 135 (256)
T COG0107 65 VVERVAEQVFIPLTVGGG-IRSVEDARKLLRAGADKVSINSAAVKDPELITE---AADRFGSQCIVVAIDAKRV----P- 135 (256)
T ss_pred HHHHHHhhceeeeEecCC-cCCHHHHHHHHHcCCCeeeeChhHhcChHHHHH---HHHHhCCceEEEEEEeeec----c-
Confidence 467888889999999865 3567766542 11222333222346664433 3456899999999997421 0
Q ss_pred HhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEE
Q 017781 169 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIV 248 (366)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~v 248 (366)
.+ .+..... ....+..+..|+.++|.++. ++.||--|.+
T Consensus 136 --~g--~~~~~~v----------------------~~~gGr~~t~~d~~~Wa~~~---------------e~~GAGEIlL 174 (256)
T COG0107 136 --DG--ENGWYEV----------------------FTHGGREDTGLDAVEWAKEV---------------EELGAGEILL 174 (256)
T ss_pred --CC--CCCcEEE----------------------EecCCCcCCCcCHHHHHHHH---------------HHcCCceEEE
Confidence 00 0000000 00012344578889998886 3456655655
Q ss_pred cC--CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHHHhhhcCHHHHHHHHH
Q 017781 249 SN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYSLAAEGEKGVRRVLE 325 (366)
Q Consensus 249 s~--~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~~l~~~G~~gv~~~~~ 325 (366)
.. +-|.+ .| =.++.+..+++.+ ++|||+|||..+.+|...++..| ||++..++-|-|. +
T Consensus 175 tsmD~DGtk--~G-yDl~l~~~v~~~v--~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~-----~-------- 236 (256)
T COG0107 175 TSMDRDGTK--AG-YDLELTRAVREAV--NIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFG-----E-------- 236 (256)
T ss_pred eeecccccc--cC-cCHHHHHHHHHhC--CCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcC-----c--------
Confidence 32 11221 11 1567888888888 89999999999999999999988 9999988888764 1
Q ss_pred HHHHHHHHHHHHcCC
Q 017781 326 MLREEFELAMALSGC 340 (366)
Q Consensus 326 ~l~~el~~~m~~~G~ 340 (366)
.-..|++..|...|.
T Consensus 237 ~~i~evK~yL~~~gi 251 (256)
T COG0107 237 ITIGEVKEYLAEQGI 251 (256)
T ss_pred ccHHHHHHHHHHcCC
Confidence 233666777766664
No 136
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.95 E-value=5.1e-05 Score=70.86 Aligned_cols=69 Identities=23% Similarity=0.304 Sum_probs=56.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|+|.|++.+-.+ .....++.++.+.++++.+ ++||+++|||++.+|+.+++..||++|++|+.++.
T Consensus 37 ~~~G~~~i~i~d~~~-~~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 37 NEQGADELVFLDITA-SSEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred HHCCCCEEEEEcCCc-ccccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 567999888776432 1123455778889998887 79999999999999999999999999999998864
No 137
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.94 E-value=0.00042 Score=64.79 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=56.9
Q ss_pred CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcC
Q 017781 225 KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 300 (366)
Q Consensus 225 ~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd 300 (366)
+.-.+| .+-+.+| .++|++.|-|.|+.-. .-........++...++.+..+|+.|||.+++|+.+.... ||
T Consensus 151 Gle~LV-EVh~~~El~~a~~~ga~iiGINnRdL~---t~~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~d 225 (247)
T PRK13957 151 GMDVLV-EVHTEDEAKLALDCGAEIIGINTRDLD---TFQIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VD 225 (247)
T ss_pred CCceEE-EECCHHHHHHHHhCCCCEEEEeCCCCc---cceECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CC
Confidence 444333 3445555 6777777766664322 2222334455666777777889999999999999987776 99
Q ss_pred EEEecHHHHHH
Q 017781 301 GIFIGRPVVYS 311 (366)
Q Consensus 301 ~V~igr~~l~~ 311 (366)
+|.||+.+|.+
T Consensus 226 avLvG~~lm~~ 236 (247)
T PRK13957 226 AALIGTYFMEK 236 (247)
T ss_pred EEEECHHHhCC
Confidence 99999999874
No 138
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.90 E-value=7.3e-05 Score=70.30 Aligned_cols=69 Identities=23% Similarity=0.320 Sum_probs=58.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|++.|.+.+..... ......++.+.++++.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 40 ~~~G~~~i~i~dl~~~~-~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 40 NEEGADELVFLDITASS-EGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred HHcCCCEEEEEeCCccc-ccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 57899999987754321 13356889999999887 79999999999999999999999999999998865
No 139
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.90 E-value=0.00012 Score=68.31 Aligned_cols=47 Identities=30% Similarity=0.487 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++.+.++.+.. ++||+++|||++.+|+.+++.+|+++|.+|+++..
T Consensus 180 ~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 180 NFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred CHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 456677776665 79999999999999999999999999999999864
No 140
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=97.89 E-value=0.00081 Score=60.92 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=48.8
Q ss_pred HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
...++|.|.+... |++.....+..++.+.++++.++ ..+|++++|||+ .+++.+++..|||.+.+|++++.
T Consensus 123 ~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~ 198 (210)
T TIGR01163 123 VLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFG 198 (210)
T ss_pred HHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 4458999876432 22111223445566666665542 237999999996 79999999999999999999863
No 141
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.86 E-value=5.8e-05 Score=71.07 Aligned_cols=69 Identities=25% Similarity=0.300 Sum_probs=57.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.+++.+.-+. .......++.+.++++.+ ++||+++|||++.+|+.+++.+||+.|.+|+.++.
T Consensus 40 ~~~G~~~l~v~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~ 108 (254)
T TIGR00735 40 DEEGADELVFLDITAS-SEGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVK 108 (254)
T ss_pred HHcCCCEEEEEcCCcc-cccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 5679999998774321 113446788899999887 79999999999999999999999999999998864
No 142
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.86 E-value=6.3e-05 Score=74.52 Aligned_cols=93 Identities=18% Similarity=0.279 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEecc-CHHH-----HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEe
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVL-TAED-----VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLD 282 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~-~~~d-----~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~ 282 (366)
+++..+.++.+++. ++++.++... +..+ .++|+|.|+++++.-.+.+.+.. .+..+.++.+.. ++|||+
T Consensus 117 p~l~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa- 192 (368)
T PRK08649 117 PELITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV- 192 (368)
T ss_pred HHHHHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEE-
Confidence 44445678888885 5555444321 2222 89999999997643223332222 345566666665 799999
Q ss_pred cCCCCHHHHHHHHHhCcCEEEecH
Q 017781 283 GGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 283 GGI~~~~dv~kalalGAd~V~igr 306 (366)
|+|.+.+++.+++.+|||+|++|+
T Consensus 193 G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 193 GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred eCCCCHHHHHHHHHcCCCEEEECC
Confidence 999999999999999999999995
No 143
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.86 E-value=0.0015 Score=60.37 Aligned_cols=48 Identities=25% Similarity=0.343 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 261 ATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 261 ~~~~~l~~i~~~~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
..++.+.++++... .++||.++|||. .+.+.+..++|||.+.+|+.+.
T Consensus 149 ~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf 199 (220)
T PRK08883 149 HTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred hHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 34556666666542 148999999998 8899999999999999999864
No 144
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.85 E-value=0.0006 Score=63.77 Aligned_cols=160 Identities=21% Similarity=0.309 Sum_probs=92.1
Q ss_pred HHHHHHHcCCCEEEEecCCCCCcchhHHHh---hhcCCCCccccccccccccCCCccccchhhHH--HhhhccCCCCCHH
Q 017781 141 LVRRAERAGFKAIALTVDTPRLGRREADIK---NRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA--YVAGQIDRSLSWK 215 (366)
Q Consensus 141 ~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~ 215 (366)
..+.-++.|+.++=|-.|.+.......+++ ....+|. -.+.+- +....+...+..|+.. .+.. -++-+
T Consensus 71 ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~Pv--L~KDFi-iD~yQI~~Ar~~GADavLLI~~----~L~~~ 143 (254)
T COG0134 71 IAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLPV--LRKDFI-IDPYQIYEARAAGADAVLLIVA----ALDDE 143 (254)
T ss_pred HHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcCCCe--eeccCC-CCHHHHHHHHHcCcccHHHHHH----hcCHH
Confidence 455667789999988888877655554443 3344441 111110 0000000000001000 0111 11222
Q ss_pred HHHHHHHh---cCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 216 DVKWLQTI---TKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 216 ~i~~lr~~---~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.++++-+. .+.-++| .+.+.++ .++|++.|-|-|+.-+.+. ..++...++...++.+..+|..+||.++
T Consensus 144 ~l~el~~~A~~LGm~~LV-EVh~~eEl~rAl~~ga~iIGINnRdL~tf~---vdl~~t~~la~~~p~~~~~IsESGI~~~ 219 (254)
T COG0134 144 QLEELVDRAHELGMEVLV-EVHNEEELERALKLGAKIIGINNRDLTTLE---VDLETTEKLAPLIPKDVILISESGISTP 219 (254)
T ss_pred HHHHHHHHHHHcCCeeEE-EECCHHHHHHHHhCCCCEEEEeCCCcchhe---ecHHHHHHHHhhCCCCcEEEecCCCCCH
Confidence 23333332 3544444 3455555 7789988888775433222 2334455666667778899999999999
Q ss_pred HHHHHHHHhCcCEEEecHHHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~~ 311 (366)
+|+.+....|||++.||+.+|..
T Consensus 220 ~dv~~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 220 EDVRRLAKAGADAFLVGEALMRA 242 (254)
T ss_pred HHHHHHHHcCCCEEEecHHHhcC
Confidence 99999999999999999999864
No 145
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.84 E-value=9.9e-05 Score=67.74 Aligned_cols=68 Identities=19% Similarity=0.364 Sum_probs=49.6
Q ss_pred HHcCCcEEEEcCCC-ccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++||..|---+.. |+ ..|......|..+++.. ++|||+|+||.++.|+.+|+++|||+|.+-+++..
T Consensus 141 ~d~GcaavMPlgsPIGS--g~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~ 209 (247)
T PF05690_consen 141 EDAGCAAVMPLGSPIGS--GRGIQNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAK 209 (247)
T ss_dssp HHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHG--SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHT
T ss_pred HHCCCCEEEeccccccc--CcCCCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhc
Confidence 99999998754421 21 12455677888888887 89999999999999999999999999999998743
No 146
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.84 E-value=0.00058 Score=61.44 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=94.1
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhh
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
.+-+....+.+...+.++.+-+.|++.+-++...+..-......+..+ |. .... ...+......+........++
T Consensus 14 ~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~--~~-~~~g-~gtvl~~d~~~~A~~~gAdgv- 88 (187)
T PRK07455 14 AIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKL--PE-CIIG-TGTILTLEDLEEAIAAGAQFC- 88 (187)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhC--CC-cEEe-EEEEEcHHHHHHHHHcCCCEE-
Confidence 445555667777777777777778888877776654322222222211 10 0000 000000000000000000011
Q ss_pred hccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 206 ~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.-|.+..+.++ .++..+++.++. +.|+.+ .+.|+|+|.+.-. ......+.+..++..++ ++|+++
T Consensus 89 --~~p~~~~~~~~-~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fpt------~~~~G~~~l~~~~~~~~-~ipvva 157 (187)
T PRK07455 89 --FTPHVDPELIE-AAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFPV------QAVGGADYIKSLQGPLG-HIPLIP 157 (187)
T ss_pred --ECCCCCHHHHH-HHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECcC------CcccCHHHHHHHHhhCC-CCcEEE
Confidence 11233434443 455556776654 788877 7899999988321 11223566777766652 599999
Q ss_pred ecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 282 DGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 282 ~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.||| +.+++...++.||++|.+++.++
T Consensus 158 iGGI-~~~n~~~~l~aGa~~vav~s~i~ 184 (187)
T PRK07455 158 TGGV-TLENAQAFIQAGAIAVGLSGQLF 184 (187)
T ss_pred eCCC-CHHHHHHHHHCCCeEEEEehhcc
Confidence 9999 78999999999999999998764
No 147
>PLN02411 12-oxophytodienoate reductase
Probab=97.80 E-value=0.0006 Score=68.30 Aligned_cols=96 Identities=14% Similarity=0.035 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHhcC-CCEEEEeccC-----------HHH--------HH----c--CCcEEEEcCCCcc---CCC---CC
Q 017781 212 LSWKDVKWLQTITK-LPILVKGVLT-----------AED--------VQ----A--GAAGIIVSNHGAR---QLD---YV 259 (366)
Q Consensus 212 ~~~~~i~~lr~~~~-~pv~vK~v~~-----------~~d--------~~----a--Gad~I~vs~~gg~---~~~---~~ 259 (366)
+..+.|+.+|+.++ -.|.+|.... .++ .+ . |+|+|.||..... +.. .+
T Consensus 217 F~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~ 296 (391)
T PLN02411 217 FLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHG 296 (391)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccC
Confidence 56788999999984 2488887531 111 22 2 5999999863210 000 11
Q ss_pred cc-h-HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 260 PA-T-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 260 ~~-~-~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
+. . .....++++.+ ++|||+.|+| +.+++.++|+.| ||+|.+||+||.
T Consensus 297 ~~~~~~~~a~~ik~~v--~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 297 SEEEEAQLMRTLRRAY--QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred CccchhHHHHHHHHHc--CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 11 1 13446677777 7899999999 679999999999 999999999986
No 148
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.80 E-value=0.0014 Score=61.91 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcC
Q 017781 264 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 316 (366)
Q Consensus 264 ~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G 316 (366)
+.+..+++.. ++||++-=||++++++.+.. .|||+|.||++++..+...+
T Consensus 188 ~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~ 237 (259)
T PF00290_consen 188 EFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENG 237 (259)
T ss_dssp HHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTC
T ss_pred HHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHcc
Confidence 4566666655 89999988999999999888 99999999999998765434
No 149
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.75 E-value=0.00075 Score=71.88 Aligned_cols=164 Identities=21% Similarity=0.255 Sum_probs=93.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHHhh---hcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHH
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKN---RFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (366)
.++.+.-++.|+.+|=|-.|....+....|++. ...+|- -.+.+- +....+.+....++...+. .-.-++-+
T Consensus 73 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~Pv--LrKDFI-id~~QI~ea~~~GADavLL--I~~~L~~~ 147 (695)
T PRK13802 73 AALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAVHIPV--LRKDFI-VTDYQIWEARAHGADLVLL--IVAALDDA 147 (695)
T ss_pred HHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCCCCE--Eecccc-CCHHHHHHHHHcCCCEeeh--hHhhcCHH
Confidence 345566788999999888887766655555543 233331 111110 0000010000000000000 00112223
Q ss_pred HHHHHHHh---cCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 216 DVKWLQTI---TKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 216 ~i~~lr~~---~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.++.+.+. .++-++| .+-+.+| .++|++.|-|-|+.= ..-...++...++...++.++.+|+.+||+++
T Consensus 148 ~l~~l~~~a~~lGme~Lv-Evh~~~el~~a~~~ga~iiGINnRdL---~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~ 223 (695)
T PRK13802 148 QLKHLLDLAHELGMTVLV-ETHTREEIERAIAAGAKVIGINARNL---KDLKVDVNKYNELAADLPDDVIKVAESGVFGA 223 (695)
T ss_pred HHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhCCCCEEEEeCCCC---ccceeCHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 34444433 3554444 3556665 888999887877532 22222344455566666777889999999999
Q ss_pred HHHHHHHHhCcCEEEecHHHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~~ 311 (366)
+|+..+..+|||+|.||+.+|.+
T Consensus 224 ~d~~~l~~~G~davLIGeslm~~ 246 (695)
T PRK13802 224 VEVEDYARAGADAVLVGEGVATA 246 (695)
T ss_pred HHHHHHHHCCCCEEEECHHhhCC
Confidence 99999999999999999988753
No 150
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.72 E-value=0.00062 Score=61.77 Aligned_cols=74 Identities=26% Similarity=0.338 Sum_probs=54.5
Q ss_pred cCHHH----HHcCCcEEEEcCCC--ccCCC-CCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 234 LTAED----VQAGAAGIIVSNHG--ARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 234 ~~~~d----~~aGad~I~vs~~g--g~~~~-~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
.+.++ .+.|+|.|.++.-. +.... ..+..++.+.++++..+ ++||++.||| +.+++.+++++||++|.+|+
T Consensus 112 ~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs 189 (212)
T PRK00043 112 HTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG-DIPIVAIGGI-TPENAPEVLEAGADGVAVVS 189 (212)
T ss_pred CCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEEeH
Confidence 45555 68899999886421 11111 11223778888877762 4999999999 78999999999999999999
Q ss_pred HHH
Q 017781 307 PVV 309 (366)
Q Consensus 307 ~~l 309 (366)
.+.
T Consensus 190 ~i~ 192 (212)
T PRK00043 190 AIT 192 (212)
T ss_pred Hhh
Confidence 865
No 151
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.72 E-value=0.0018 Score=58.82 Aligned_cols=167 Identities=14% Similarity=0.097 Sum_probs=104.2
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhh
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
.+-+....+.+...++++.+.+.|++.+-||.++|..-.-.+.++..+ |. +.+. ..........+........++.
T Consensus 6 vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~--~~-~~vG-AGTVl~~e~a~~ai~aGA~Fiv 81 (201)
T PRK06015 6 VIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEV--EE-AIVG-AGTILNAKQFEDAAKAGSRFIV 81 (201)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHC--CC-CEEe-eEeCcCHHHHHHHHHcCCCEEE
Confidence 344555678888889999999999999999999987544445555444 21 1110 0000000000000011111222
Q ss_pred hccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 206 ~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.|.++-+.+++.++ .++| ++=|++|+.| .++|+|.|.+.-.+ .-+|+.. ++.++.-++ +++++.
T Consensus 82 ---SP~~~~~vi~~a~~-~~i~-~iPG~~TptEi~~A~~~Ga~~vK~FPa~---~~GG~~y---ikal~~plp-~~~l~p 149 (201)
T PRK06015 82 ---SPGTTQELLAAAND-SDVP-LLPGAATPSEVMALREEGYTVLKFFPAE---QAGGAAF---LKALSSPLA-GTFFCP 149 (201)
T ss_pred ---CCCCCHHHHHHHHH-cCCC-EeCCCCCHHHHHHHHHCCCCEEEECCch---hhCCHHH---HHHHHhhCC-CCcEEe
Confidence 35566777888776 4776 4557889887 99999999986521 1123433 444444443 799999
Q ss_pred ecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 282 DGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 282 ~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
+|||. .+++...|.+|+.+++.|+.+.
T Consensus 150 tGGV~-~~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 150 TGGIS-LKNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred cCCCC-HHHHHHHHhCCCeEEEEchhhC
Confidence 99995 4799999999988777776654
No 152
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.71 E-value=0.00037 Score=66.27 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcC---CCceEEEecCC
Q 017781 214 WKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 285 (366)
Q Consensus 214 ~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGI 285 (366)
.+.++.+|+..+ ...+.-.+.+.++ .++|+|.|-+.| .+.+.+.++++..+ .++.+.++|||
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn----------~~~e~l~~~v~~~~~~~~~~~ieAsGgI 238 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDN----------MSVEEIKEVVAYRNANYPHVLLEASGNI 238 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhhccCCCeEEEEECCC
Confidence 456888988875 2334446778887 999999998877 24556666665543 36779999999
Q ss_pred CCHHHHHHHHHhCcCEEEecHHHH
Q 017781 286 RRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~igr~~l 309 (366)
+.+.+.++..+|+|.+.+|+++.
T Consensus 239 -t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 239 -TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred -CHHHHHHHHHcCCCEEEeChhhc
Confidence 99999999999999999998765
No 153
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.69 E-value=0.0011 Score=60.13 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCCEEEEec--cCH-HH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 216 DVKWLQTITKLPILVKGV--LTA-ED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v--~~~-~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.++++++ .++++++-.. .+. ++ .+.|+|.|.+......+ ..++..++.+.++++.++ .+++.++||| +.
T Consensus 94 ~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~-~~~~~~~~~i~~l~~~~~-~~~i~v~GGI-~~ 169 (206)
T TIGR03128 94 AVKAAKK-HGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQ-AKGQNPFEDLQTILKLVK-EARVAVAGGI-NL 169 (206)
T ss_pred HHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcc-cCCCCCHHHHHHHHHhcC-CCcEEEECCc-CH
Confidence 4555555 4788777532 222 33 67799999875321111 223445666777777664 4677779999 88
Q ss_pred HHHHHHHHhCcCEEEecHHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~ 310 (366)
+.+.+++..|||.|.+||.++.
T Consensus 170 ~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 170 DTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred HHHHHHHHcCCCEEEEeehhcC
Confidence 8999999999999999999753
No 154
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.69 E-value=0.0014 Score=66.47 Aligned_cols=90 Identities=21% Similarity=0.280 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCCEEEEec--cCH-HH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 216 DVKWLQTITKLPILVKGV--LTA-ED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v--~~~-~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.++.+++ .+.++++..+ .+. +. .+.|+|+|.++. |......++..++.+.++++.+ ++||++.||| +.
T Consensus 99 ~i~~a~~-~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~p-g~~~~~~~~~~~~~l~~l~~~~--~iPI~a~GGI-~~ 173 (430)
T PRK07028 99 AVRAARK-YGVRLMADLINVPDPVKRAVELEELGVDYINVHV-GIDQQMLGKDPLELLKEVSEEV--SIPIAVAGGL-DA 173 (430)
T ss_pred HHHHHHH-cCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEe-ccchhhcCCChHHHHHHHHhhC--CCcEEEECCC-CH
Confidence 4555555 4666665322 232 22 678999997652 2211112334567788877765 6999999999 68
Q ss_pred HHHHHHHHhCcCEEEecHHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~ 310 (366)
+.+.++++.|||.+.+||.++.
T Consensus 174 ~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 174 ETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred HHHHHHHHcCCCEEEEChHHcC
Confidence 9999999999999999999764
No 155
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.67 E-value=0.0011 Score=59.80 Aligned_cols=89 Identities=21% Similarity=0.203 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCCEEEE--eccCHHH----HHcCCcEEEEc-CCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 216 DVKWLQTITKLPILVK--GVLTAED----VQAGAAGIIVS-NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK--~v~~~~d----~~aGad~I~vs-~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.++.+++ .++++++= +..++++ .+.|+|.+.+. +..+... +.+...+.+.++++.. ++|++++|||+ .
T Consensus 95 ~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~-~~~~~~~~i~~~~~~~--~~~i~~~GGI~-~ 169 (202)
T cd04726 95 AVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAA-GGWWPEDDLKKVKKLL--GVKVAVAGGIT-P 169 (202)
T ss_pred HHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCccccccc-CCCCCHHHHHHHHhhc--CCCEEEECCcC-H
Confidence 4555554 46676653 4456666 67799998874 2211111 1344567777776553 79999999995 9
Q ss_pred HHHHHHHHhCcCEEEecHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l 309 (366)
+++.+++..|||+|.+|+++.
T Consensus 170 ~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 170 DTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred HHHHHHHhcCCCEEEEeehhc
Confidence 999999999999999999975
No 156
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.66 E-value=0.00034 Score=64.69 Aligned_cols=69 Identities=29% Similarity=0.379 Sum_probs=56.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.+.+..-.|. ..+....++.+.++++.+ .+||+++|||++.+|+.+++.+||+.|.+|+.++.
T Consensus 40 ~~~g~~~i~v~dld~~-~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 40 EDQGAKWLHLVDLDGA-KAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK 108 (233)
T ss_pred HHcCCCEEEEEeCCcc-ccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 5578899987663221 123346788899998887 79999999999999999999999999999998865
No 157
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.66 E-value=0.00068 Score=62.89 Aligned_cols=61 Identities=28% Similarity=0.536 Sum_probs=49.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCC--CCHHH----HHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV--RRGTD----VFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI--~~~~d----v~kalalGAd~V~igr~~l~ 310 (366)
.++|+|+|.+++.+ .++.+.++.+.. .+||++.||+ .+.+| +..++.+||++|.+||.++.
T Consensus 153 ~~~GaD~Ik~~~~~---------~~~~~~~i~~~~--~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~ 219 (235)
T cd00958 153 AELGADIVKTKYTG---------DAESFKEVVEGC--PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQ 219 (235)
T ss_pred HHHCCCEEEecCCC---------CHHHHHHHHhcC--CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhc
Confidence 68899999985422 456777777766 6899999997 67766 77788999999999999874
No 158
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.64 E-value=0.00015 Score=66.92 Aligned_cols=49 Identities=20% Similarity=0.364 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
+.++.+.++.+.+ .+|||++|||++.+|+.+...+|||+|.+|++|..+
T Consensus 171 ~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 171 PNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 4788888998877 799999999999999999888999999999998653
No 159
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.64 E-value=0.021 Score=54.63 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=71.6
Q ss_pred cCHHH-----HHcCCcEEEEc--CCCccCCCCCcchHHHHHHHHHHcCCCceEEEec--CCCCHHHHHHHHHhCcCEEEe
Q 017781 234 LTAED-----VQAGAAGIIVS--NHGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 234 ~~~~d-----~~aGad~I~vs--~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G--GI~~~~dv~kalalGAd~V~i 304 (366)
.++++ .+.|+|++-++ +-.|...+..+-.++.|.++++.+ ++|+++-| || +.+++.+++..|++.|.+
T Consensus 153 t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI-~~e~~~~~i~~G~~kinv 229 (281)
T PRK06806 153 TSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV--HIPLVLHGGSGI-SPEDFKKCIQHGIRKINV 229 (281)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc--CCCEEEECCCCC-CHHHHHHHHHcCCcEEEE
Confidence 45555 34699999994 322322222234788999999988 79999999 88 578899999999999999
Q ss_pred cHHHHHHhhh-------cCH-----HHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 305 GRPVVYSLAA-------EGE-----KGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 305 gr~~l~~l~~-------~G~-----~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
.+.+..+... ..+ .-.....+.+++..+..|+.+|..
T Consensus 230 ~T~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 278 (281)
T PRK06806 230 ATATFNSVITAVNNLVLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGSE 278 (281)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9988654211 000 112333455666677777777753
No 160
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.63 E-value=0.00022 Score=65.95 Aligned_cols=69 Identities=35% Similarity=0.479 Sum_probs=55.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.+.|..-.+. .......++.+.++.+.+ .+||++.|||++.+|+.+++..|||.|++|+..+.
T Consensus 39 ~~~g~d~l~v~dl~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 39 EEAGAKWLHVVDLDGA-KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred HHcCCCEEEEECCCcc-ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 4578999998753221 112345678888998887 79999999999999999999999999999998754
No 161
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.62 E-value=0.00054 Score=69.70 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 017781 263 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRS 342 (366)
Q Consensus 263 ~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~m~~~G~~~ 342 (366)
...-.++...+++++.+|+.+||.+++|+..+ ..|||+|.||+.+|.+- . ....+..+ +......||.++
T Consensus 197 ~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~~davLiG~~lm~~~---d---~~~~~~~L---~~~~vKICGit~ 266 (454)
T PRK09427 197 LNRTRELAPLIPADVIVISESGIYTHAQVREL-SPFANGFLIGSSLMAED---D---LELAVRKL---ILGENKVCGLTR 266 (454)
T ss_pred HHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-HhcCCEEEECHHHcCCC---C---HHHHHHHH---hccccccCCCCC
Confidence 34445556666778889999999999999885 45899999999998751 1 12222233 223457799998
Q ss_pred hhhhc
Q 017781 343 LKEIT 347 (366)
Q Consensus 343 l~el~ 347 (366)
.++..
T Consensus 267 ~eda~ 271 (454)
T PRK09427 267 PQDAK 271 (454)
T ss_pred HHHHH
Confidence 87775
No 162
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.61 E-value=0.0048 Score=57.22 Aligned_cols=63 Identities=22% Similarity=0.370 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHH
Q 017781 263 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 333 (366)
Q Consensus 263 ~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~ 333 (366)
++-+.++++..+ .+.|.++|||+. +.+.++..+|||.+.+||++..+ . -..+.++.++++++.
T Consensus 161 ~~ki~~~~~~~~-~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI~~a---~---d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 161 MPKVRELRKRYP-HLNIQVDGGINL-ETIDIAADAGANVIVAGSSIFKA---K---DRKQAIELLRESVQK 223 (228)
T ss_pred HHHHHHHHHhcc-cCeEEECCCCCH-HHHHHHHHcCCCEEEEchHHhCC---C---CHHHHHHHHHHHHHH
Confidence 344444444332 478999999965 67778889999999999985421 1 133455566665554
No 163
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.61 E-value=0.0026 Score=58.93 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=58.0
Q ss_pred CcEEEEcC-CCccC-CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHH
Q 017781 243 AAGIIVSN-HGARQ-LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 320 (366)
Q Consensus 243 ad~I~vs~-~gg~~-~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv 320 (366)
+|.|.+.. +.|.. ....+..++.+.++++... ++||.++||| +.+++.+.+.+|||.+.+|++++.+ +-.
T Consensus 140 ~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~-~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~~------~d~ 211 (229)
T PLN02334 140 VDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYP-ELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFGA------PDY 211 (229)
T ss_pred CCEEEEEEEecCCCccccCHHHHHHHHHHHHhCC-CCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhCC------CCH
Confidence 89886532 22221 1234456677777776542 5799999999 7999999999999999999986432 123
Q ss_pred HHHHHHHHHHHHHHH
Q 017781 321 RRVLEMLREEFELAM 335 (366)
Q Consensus 321 ~~~~~~l~~el~~~m 335 (366)
...++.++++++..|
T Consensus 212 ~~~~~~l~~~~~~~~ 226 (229)
T PLN02334 212 AEVISGLRASVEKAA 226 (229)
T ss_pred HHHHHHHHHHHHHhh
Confidence 455666666666554
No 164
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.59 E-value=0.0073 Score=56.62 Aligned_cols=198 Identities=21% Similarity=0.254 Sum_probs=107.9
Q ss_pred ccceeEcCcccCCceEe-cccccccccCChhhHHHHHHHHHcCCceecC-CCCCCCHHHHhccCCCceEEEeeecCCHHH
Q 017781 60 DMNTTVLGFKISMPIMI-APTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTSSVEEVASTGPGIRFFQLYVYKDRNV 137 (366)
Q Consensus 60 d~st~l~g~~l~~Pi~i-Apm~~~~l~~~~~e~~la~aa~~~G~~~~vs-~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~ 137 (366)
++-..+.+.....+.+| .|.+. -..+--..+|+.++++|+.+.-+ .+.+.+ .|+-|| +-..+-
T Consensus 3 ~~~~~~~~~~~~~~~~iaGPC~v---Es~e~~~~~a~~~~~~g~~~~r~g~~kpRt---------s~~sf~---G~G~~g 67 (250)
T PRK13397 3 DIMSDFQNKTCSKNNFIVGPCSI---ESYDHIRLAASSAKKLGYNYFRGGAYKPRT---------SAASFQ---GLGLQG 67 (250)
T ss_pred cceEEecCccCCCCcEEeccCcc---CCHHHHHHHHHHHHHcCCCEEEecccCCCC---------CCcccC---CCCHHH
Confidence 34444455555555444 45433 22333468999999999988864 232221 345565 233456
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC-CCHHH
Q 017781 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS-LSWKD 216 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 216 (366)
...+.+.+++.|...+- ++-.+ +.-+....+ ++ + +. .+... ...+.
T Consensus 68 l~~L~~~~~~~Gl~~~T-ev~d~----~~v~~~~e~-vd----------i----------------lq-Igs~~~~n~~L 114 (250)
T PRK13397 68 IRYLHEVCQEFGLLSVS-EIMSE----RQLEEAYDY-LD----------V----------------IQ-VGARNMQNFEF 114 (250)
T ss_pred HHHHHHHHHHcCCCEEE-eeCCH----HHHHHHHhc-CC----------E----------------EE-ECcccccCHHH
Confidence 66677777788876653 21111 111111110 00 0 00 00011 13455
Q ss_pred HHHHHHhcCCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCC---cchHHHHHHHHHHcCCCceEEEe-
Q 017781 217 VKWLQTITKLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYV---PATIMALEEVVKATQGRIPVFLD- 282 (366)
Q Consensus 217 i~~lr~~~~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~---~~~~~~l~~i~~~~~~~i~vi~~- 282 (366)
++.+.+ +++||++|-. .+++| .+.|..-|++--+|-+..... ...+..++.+++.. .+|||++
T Consensus 115 L~~va~-tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPVivd~ 191 (250)
T PRK13397 115 LKTLSH-IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPIIVDV 191 (250)
T ss_pred HHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCeEECC
Confidence 666655 5899999955 57766 667876555443232222111 34556677777655 6899997
Q ss_pred ---cCCCC--HHHHHHHHHhCcCEEEecHHH
Q 017781 283 ---GGVRR--GTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 283 ---GGI~~--~~dv~kalalGAd~V~igr~~ 308 (366)
+|.|. ..-...|+++|||+++|-+-+
T Consensus 192 SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 192 SHSTGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred CCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 44433 133557888999999998754
No 165
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.57 E-value=0.00031 Score=65.25 Aligned_cols=69 Identities=22% Similarity=0.442 Sum_probs=54.1
Q ss_pred HHcCCcEEEEcCCC-ccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.++||..|---+.. |+ ..|......|..+++.. ++||+.++||.+++|+.+|+++|||+|++.+.+..+
T Consensus 155 ed~Gc~aVMPlgsPIGS--g~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA 224 (267)
T CHL00162 155 EDIGCATVMPLGSPIGS--GQGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQA 224 (267)
T ss_pred HHcCCeEEeeccCcccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecC
Confidence 99999988743321 11 12455667777777665 799999999999999999999999999999988643
No 166
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=97.56 E-value=0.0026 Score=61.95 Aligned_cols=183 Identities=17% Similarity=0.243 Sum_probs=98.0
Q ss_pred HHHhccCCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhh---h-cCCCCccccccccccccC
Q 017781 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKN---R-FTLPPFLTLKNFQGLDLG 190 (366)
Q Consensus 115 e~i~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~---~-~~~p~~~~~~~~~~~~~~ 190 (366)
.|++.+.|...++. ..-|+ .++.+.-++.|+.+|=|-.|....+....+++. . ..+|- -.+.+- +...
T Consensus 123 AEvKrASPSkG~I~--~~~dp---~~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPv--LrKDFI-ID~y 194 (338)
T PLN02460 123 AEVKKASPSRGVLR--ENFDP---VEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPL--LCKEFI-VDAW 194 (338)
T ss_pred eeeccCCCCCCccC--CCCCH---HHHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCE--eecccc-CCHH
Confidence 45555556333332 12244 345556678899999888887777666655543 2 33331 111110 0000
Q ss_pred CCccccchhhHHHhhhccCCCCCHHHHHHHHH---hcCCCEEEEeccCHHH----HHc-CCcEEEEcCCCccCCCCCcch
Q 017781 191 KMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT---ITKLPILVKGVLTAED----VQA-GAAGIIVSNHGARQLDYVPAT 262 (366)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~---~~~~pv~vK~v~~~~d----~~a-Gad~I~vs~~gg~~~~~~~~~ 262 (366)
.+.+.+..|+...+. ...-++-+.++.+.+ ..+.-++| .+-+.++ .++ |++.|-|.|+.=..+...
T Consensus 195 QI~eAr~~GADAVLL--IaaiL~~~~L~~l~~~A~~LGme~LV-EVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vD--- 268 (338)
T PLN02460 195 QIYYARSKGADAILL--IAAVLPDLDIKYMLKICKSLGMAALI-EVHDEREMDRVLGIEGVELIGINNRSLETFEVD--- 268 (338)
T ss_pred HHHHHHHcCCCcHHH--HHHhCCHHHHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhcCCCCEEEEeCCCCCcceEC---
Confidence 011111111100000 001122223444333 34555444 4556665 776 999888877543222222
Q ss_pred HHHHHHHHH-----Hc-CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 263 IMALEEVVK-----AT-QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 263 ~~~l~~i~~-----~~-~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
++.-.++.. .+ +.++.+++.+||++++|+.....+|||+|.||..+|..
T Consensus 269 l~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 269 ISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred HHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 222233333 23 23567899999999999999999999999999999874
No 167
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.54 E-value=0.0092 Score=54.12 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCCCEEEEe-ccCHHH------HHcCCcEEEEcCCCccCC--CCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 214 WKDVKWLQTITKLPILVKG-VLTAED------VQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~-v~~~~d------~~aGad~I~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
.+.++.+|+..+.+++... +.+..+ ...|+|++.+....+... .+.+..|+.+.++. . ++|+++.||
T Consensus 85 ~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~--~~PvilaGG 160 (203)
T cd00405 85 PEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--S--RKPVILAGG 160 (203)
T ss_pred HHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--c--CCCEEEECC
Confidence 4567777776666655322 222222 447899998876422111 12345677777665 3 789999999
Q ss_pred CCCHHHHHHHHHhC-cCEEEecHHHHH
Q 017781 285 VRRGTDVFKALALG-ASGIFIGRPVVY 310 (366)
Q Consensus 285 I~~~~dv~kalalG-Ad~V~igr~~l~ 310 (366)
| +++.+.+++..| +++|-+.+.+..
T Consensus 161 I-~~~Nv~~~i~~~~~~gvdv~S~ie~ 186 (203)
T cd00405 161 L-TPDNVAEAIRLVRPYGVDVSSGVET 186 (203)
T ss_pred C-ChHHHHHHHHhcCCCEEEcCCcccC
Confidence 9 999999999999 999999988753
No 168
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.53 E-value=0.00091 Score=62.06 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=33.7
Q ss_pred CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 276 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 276 ~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
++|||++|||++.+|+.++..+|+++|.+|++|.++
T Consensus 182 ~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 182 DEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 689999999999999999999999999999998764
No 169
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.50 E-value=0.0013 Score=58.47 Aligned_cols=69 Identities=22% Similarity=0.224 Sum_probs=52.7
Q ss_pred HHcCCcEEEEcCCC--cc-CCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHG--AR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~g--g~-~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.|.++... .. +..+.+..++.+.++++.. ++||++.|||. .+++.+++.+||++|.+|+.++.
T Consensus 112 ~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~~i~~ 183 (196)
T cd00564 112 EELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLAAGADGVAVISAITG 183 (196)
T ss_pred hhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCCEEEEehHhhc
Confidence 77899999987532 11 1111445677788877664 79999999995 79999999999999999998753
No 170
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.50 E-value=0.00069 Score=61.31 Aligned_cols=169 Identities=18% Similarity=0.239 Sum_probs=98.8
Q ss_pred EEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhh
Q 017781 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (366)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
.+-+....+.+...++++.+.+.|.+.+-||.++|..-.-.+.++..+ |. +... ..........+........++.
T Consensus 10 iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~--p~-~~vG-AGTV~~~e~a~~a~~aGA~Fiv 85 (196)
T PF01081_consen 10 IIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEF--PD-LLVG-AGTVLTAEQAEAAIAAGAQFIV 85 (196)
T ss_dssp EEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHH--TT-SEEE-EES--SHHHHHHHHHHT-SEEE
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHC--CC-CeeE-EEeccCHHHHHHHHHcCCCEEE
Confidence 344455677888888888889999999999999986433334444444 22 1110 0000000000000111111222
Q ss_pred hccCCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 206 ~~~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.|.++-+.+++.++. ++| ++=|++|+.| .++|+|.|.+.-.+ .-+|+ ..++.++.-+ .+++++.
T Consensus 86 ---SP~~~~~v~~~~~~~-~i~-~iPG~~TptEi~~A~~~G~~~vK~FPA~---~~GG~---~~ik~l~~p~-p~~~~~p 153 (196)
T PF01081_consen 86 ---SPGFDPEVIEYAREY-GIP-YIPGVMTPTEIMQALEAGADIVKLFPAG---ALGGP---SYIKALRGPF-PDLPFMP 153 (196)
T ss_dssp ---ESS--HHHHHHHHHH-TSE-EEEEESSHHHHHHHHHTT-SEEEETTTT---TTTHH---HHHHHHHTTT-TT-EEEE
T ss_pred ---CCCCCHHHHHHHHHc-CCc-ccCCcCCHHHHHHHHHCCCCEEEEecch---hcCcH---HHHHHHhccC-CCCeEEE
Confidence 255667778877764 776 5567889887 99999999986532 11224 3444444334 3799999
Q ss_pred ecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 282 DGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 282 ~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.|||.- +++...+.+|+.+|++|+.+...
T Consensus 154 tGGV~~-~N~~~~l~ag~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 154 TGGVNP-DNLAEYLKAGAVAVGGGSWLFPK 182 (196)
T ss_dssp BSS--T-TTHHHHHTSTTBSEEEESGGGSH
T ss_pred cCCCCH-HHHHHHHhCCCEEEEECchhcCH
Confidence 999975 79999999999999999977543
No 171
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.47 E-value=0.0013 Score=62.45 Aligned_cols=61 Identities=26% Similarity=0.495 Sum_probs=48.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC--CHHHHHHHH----HhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR--RGTDVFKAL----ALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~--~~~dv~kal----alGAd~V~igr~~l~ 310 (366)
.++|||+|..+-.+ ..+.+.++.+.. ++||+++|||+ +.+++.+.+ .+||+++.+||.++.
T Consensus 170 ~e~GAD~vKt~~~~---------~~~~l~~~~~~~--~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 170 AELGADIVKTNYTG---------DPESFREVVEGC--PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred HHHCCCEEeeCCCC---------CHHHHHHHHHhC--CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 78999999886321 346677766654 79999999999 777777664 899999999999864
No 172
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.43 E-value=0.00068 Score=63.38 Aligned_cols=68 Identities=28% Similarity=0.269 Sum_probs=54.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.+++-.--+. .+.....+.+.++.+.+ .+||.+.|||||.+|+.+++.+||+.|.+|+..+.
T Consensus 42 ~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 42 QRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred HHCCCCEEEEEecccc--CCCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 4578887775432111 12345678999999888 79999999999999999999999999999998764
No 173
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.41 E-value=0.00096 Score=62.05 Aligned_cols=91 Identities=23% Similarity=0.356 Sum_probs=59.1
Q ss_pred HHHHHHHHh---cCCCEEEEeccCH-H-------H---------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcC
Q 017781 215 KDVKWLQTI---TKLPILVKGVLTA-E-------D---------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ 274 (366)
Q Consensus 215 ~~i~~lr~~---~~~pv~vK~v~~~-~-------d---------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~ 274 (366)
+.++++++. +++|+++=..++. + + .++|+|+|..+..+. ........+.+.++.+..
T Consensus 112 ~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~--~~~t~~~~~~~~~~~~~~- 188 (236)
T PF01791_consen 112 EEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP--VGATPEDVELMRKAVEAA- 188 (236)
T ss_dssp HHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS--SCSHHHHHHHHHHHHHTH-
T ss_pred HHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc--ccccHHHHHHHHHHHHhc-
Confidence 344444443 4788888754322 2 1 899999999876411 111223344455555433
Q ss_pred CCce----EEEecCC------CCHHHHHHHHHhCc--CEEEecHHHH
Q 017781 275 GRIP----VFLDGGV------RRGTDVFKALALGA--SGIFIGRPVV 309 (366)
Q Consensus 275 ~~i~----vi~~GGI------~~~~dv~kalalGA--d~V~igr~~l 309 (366)
.+| |.++||| ++.+++.+++.+|| .++..||.+.
T Consensus 189 -~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 189 -PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp -SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred -CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 456 9999999 99999999999999 8888888653
No 174
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=97.40 E-value=0.033 Score=51.11 Aligned_cols=95 Identities=25% Similarity=0.181 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCCC
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 287 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~~ 287 (366)
+.++.|++. ++++-+=.+.+.+. .++|++.|.. .-||-.+.+...++.+.++.+.+ +.+..|++.+ +|+
T Consensus 92 ~A~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIlaAS-~r~ 167 (213)
T TIGR00875 92 KAVKILKKE-GIKTNVTLVFSAAQALLAAKAGATYVSP--FVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIAAS-VRH 167 (213)
T ss_pred HHHHHHHHC-CCceeEEEecCHHHHHHHHHcCCCEEEe--ecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEEec-cCC
Confidence 445566553 89999999999887 8999997753 33554455556677777776654 2366777755 999
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
..++.+++.+|+|.|-+.-.++..+.
T Consensus 168 ~~~v~~~~~~G~d~vTip~~vl~~l~ 193 (213)
T TIGR00875 168 PRHVLEAALIGADIATMPLDVMQQLF 193 (213)
T ss_pred HHHHHHHHHcCCCEEEcCHHHHHHHH
Confidence 99999999999999999999888764
No 175
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.40 E-value=0.059 Score=51.62 Aligned_cols=103 Identities=25% Similarity=0.343 Sum_probs=72.2
Q ss_pred CHHH----H-HcCCcEEEEcC---CCccCCCCCcchHHHHHHHHHHcCCCceEEEec--CCCCHHHHHHHHHhCcCEEEe
Q 017781 235 TAED----V-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 235 ~~~d----~-~aGad~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G--GI~~~~dv~kalalGAd~V~i 304 (366)
++++ . +.|+|.+.++. ||-. .....-.++.|.++++.+ ++|+++=| ||. .+++.+++.+|++.|-+
T Consensus 154 ~~eea~~f~~~tgvD~Lavs~Gt~hg~~-~~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~-~e~i~~~i~~Gi~kiNv 229 (282)
T TIGR01859 154 DPDEAEQFVKETGVDYLAAAIGTSHGKY-KGEPGLDFERLKEIKELT--NIPLVLHGASGIP-EEQIKKAIKLGIAKINI 229 (282)
T ss_pred CHHHHHHHHHHHCcCEEeeccCcccccc-CCCCccCHHHHHHHHHHh--CCCEEEECCCCCC-HHHHHHHHHcCCCEEEE
Confidence 5555 4 48999999762 4321 112234678899999988 79999999 984 67899999999999999
Q ss_pred cHHHHHHhhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 305 GRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 305 gr~~l~~l~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
++-+..+... .. ..-.....+.+.+..+..|+.+|..
T Consensus 230 ~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~ 279 (282)
T TIGR01859 230 DTDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSA 279 (282)
T ss_pred CcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9987554211 00 1223445567778888888888754
No 176
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.38 E-value=0.014 Score=53.44 Aligned_cols=149 Identities=23% Similarity=0.328 Sum_probs=90.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
..|.....+.+++++++|++.+ ++|. + -..| +| +-.
T Consensus 12 saD~~~l~~el~~~~~agad~i--H~DV--M-------DghF-VP--------------------------------NiT 47 (220)
T COG0036 12 SADFARLGEELKALEAAGADLI--HIDV--M-------DGHF-VP--------------------------------NIT 47 (220)
T ss_pred hCCHhHHHHHHHHHHHcCCCEE--EEec--c-------CCCc-CC--------------------------------Ccc
Confidence 4677788899999999999886 4442 0 0001 11 012
Q ss_pred CCHHHHHHHHHhcCCCEEEEe-ccCHHH-----HHcCCcEEEEcCCCc----c--------------------C------
Q 017781 212 LSWKDVKWLQTITKLPILVKG-VLTAED-----VQAGAAGIIVSNHGA----R--------------------Q------ 255 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~-v~~~~d-----~~aGad~I~vs~~gg----~--------------------~------ 255 (366)
+....++++|+.++.|+=|=. +.+++. .++|||.|.++---. + .
T Consensus 48 fGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~ 127 (220)
T COG0036 48 FGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEP 127 (220)
T ss_pred cCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHH
Confidence 234567777777777766664 345544 777888887753211 0 0
Q ss_pred ----C-----------CCC----cchHHHHHHHHHHcCC--CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 256 ----L-----------DYV----PATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 256 ----~-----------~~~----~~~~~~l~~i~~~~~~--~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
. .+| +..++-+.++++.... ++-|-+||||. .+-+-++.++|||.+..|+ .+|.
T Consensus 128 ~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGS-alF~--- 202 (220)
T COG0036 128 VLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGS-ALFG--- 202 (220)
T ss_pred HHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEE-EEeC---
Confidence 0 122 3355666666666532 57799999994 4556667779999999999 4453
Q ss_pred cCHHHHHHHHHHHHHHH
Q 017781 315 EGEKGVRRVLEMLREEF 331 (366)
Q Consensus 315 ~G~~gv~~~~~~l~~el 331 (366)
+.+ ....++.++.++
T Consensus 203 -~~d-~~~~i~~~~~~~ 217 (220)
T COG0036 203 -ADD-YKATIRELRGEL 217 (220)
T ss_pred -Ccc-HHHHHHHHHHHh
Confidence 222 344455555443
No 177
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.37 E-value=0.0026 Score=58.96 Aligned_cols=96 Identities=24% Similarity=0.266 Sum_probs=69.3
Q ss_pred CHHHHHHHHHhcCCCEEEEec----------------cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHH
Q 017781 213 SWKDVKWLQTITKLPILVKGV----------------LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 271 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v----------------~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~ 271 (366)
.++.++++.+.++-.|+|-.= .++.+ .+.|+..|.+..-.--.. ..-+.++.+.++++
T Consensus 110 ~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGt-l~G~n~~l~~~l~~ 188 (241)
T COG0106 110 NPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGT-LSGPNVDLVKELAE 188 (241)
T ss_pred CHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEecccccc-cCCCCHHHHHHHHH
Confidence 455666666766545555411 12233 888999998765221001 12257888999999
Q ss_pred HcCCCceEEEecCCCCHHHHHHHHHh-CcCEEEecHHHHHH
Q 017781 272 ATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVYS 311 (366)
Q Consensus 272 ~~~~~i~vi~~GGI~~~~dv~kalal-GAd~V~igr~~l~~ 311 (366)
++ ++||+++|||++-.|+..+-.+ |...|.+||+++.+
T Consensus 189 ~~--~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g 227 (241)
T COG0106 189 AV--DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEG 227 (241)
T ss_pred Hh--CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcC
Confidence 98 8999999999999999998889 99999999998754
No 178
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.36 E-value=0.01 Score=53.52 Aligned_cols=69 Identities=12% Similarity=0.208 Sum_probs=46.6
Q ss_pred cCCcEEEEcC-CCc-cCCCCCcchHHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 241 AGAAGIIVSN-HGA-RQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 241 aGad~I~vs~-~gg-~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|.+.+.. +.| +.........+.+.++++..+ .++|+++.|||+. +++.+++..|||.|.+|++++.
T Consensus 126 ~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 126 DEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred hhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 4478876543 222 211222334455556655442 1489999999995 9999999999999999999864
No 179
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.35 E-value=0.0014 Score=61.58 Aligned_cols=92 Identities=26% Similarity=0.230 Sum_probs=63.2
Q ss_pred CHHHHHHHHHhcCCCEEEEec-----cCHH-H--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc-----
Q 017781 213 SWKDVKWLQTITKLPILVKGV-----LTAE-D--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT----- 273 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-----~~~~-d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~----- 273 (366)
..++|+++++..+-++.+|.+ ++.+ . .++|||+|.-|...+ .+..+.+.+.-+++.+
T Consensus 117 v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~----~~gAt~edv~lm~~~i~~~~~ 192 (257)
T PRK05283 117 GFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKV----PVNATLEAARIMLEVIRDMGV 192 (257)
T ss_pred HHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHHHhccc
Confidence 345788888876435788866 3433 2 899999999876322 1224555444444443
Q ss_pred CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 274 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 274 ~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
++++.|=++||||+.+++.+++.+|.+.. |.-|+.
T Consensus 193 ~~~vgIKAsGGIrt~~~A~~~i~ag~~~l--g~~~~~ 227 (257)
T PRK05283 193 AKTVGFKPAGGVRTAEDAAQYLALADEIL--GADWAD 227 (257)
T ss_pred CCCeeEEccCCCCCHHHHHHHHHHHHHHh--ChhhcC
Confidence 35789999999999999999999998754 555543
No 180
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.34 E-value=0.011 Score=54.64 Aligned_cols=92 Identities=27% Similarity=0.371 Sum_probs=55.9
Q ss_pred HHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCC--cc--CCCCC-cchHH-HHHHHHHHcCCCceEEEecCCC
Q 017781 217 VKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHG--AR--QLDYV-PATIM-ALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 217 i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~g--g~--~~~~~-~~~~~-~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
++..++ .++.+++ .+.+.++ .+.|.|.|.+-..+ |+ ..... +...+ .+..+++. ..++||++.|||+
T Consensus 107 v~~a~~-~Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~-~~~~pvi~GggI~ 183 (223)
T PRK04302 107 VERAKK-LGLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV-NPDVKVLCGAGIS 183 (223)
T ss_pred HHHHHH-CCCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc-cCCCEEEEECCCC
Confidence 334444 2544333 3344444 56778888754321 21 11111 22222 23333332 2368999999999
Q ss_pred CHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
+++++..++..|||+|.+|+.++..
T Consensus 184 ~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 184 TGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred CHHHHHHHHcCCCCEEEEehHHhCC
Confidence 9999999999999999999999853
No 181
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.31 E-value=0.023 Score=52.50 Aligned_cols=63 Identities=21% Similarity=0.374 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHH
Q 017781 262 TIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 331 (366)
Q Consensus 262 ~~~~l~~i~~~~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el 331 (366)
.++-+.++++... .++.|-+||||. .+.+.+..++|||.+.+|+.+ |. .+.....++.+++.+
T Consensus 154 ~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSai-F~-----~~d~~~~~~~lr~~~ 219 (223)
T PRK08745 154 ALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAI-FN-----APDYAQVIAQMRAAV 219 (223)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhh-hC-----CCCHHHHHHHHHHHH
Confidence 4455555555432 257799999996 667778888999999999984 43 111344555555443
No 182
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.31 E-value=0.0009 Score=62.10 Aligned_cols=67 Identities=25% Similarity=0.394 Sum_probs=48.5
Q ss_pred HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+..|++..- -|+ ..| +.++.+.++++.+ ++|||++|||++.+|+.++...|+++|.+|++|..
T Consensus 157 ~~~g~~~ii~tdi~~dGt--~~G-~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~ 225 (229)
T PF00977_consen 157 EELGAGEIILTDIDRDGT--MQG-PDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHE 225 (229)
T ss_dssp HHTT-SEEEEEETTTTTT--SSS---HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEEEESHHHHT
T ss_pred HhcCCcEEEEeeccccCC--cCC-CCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhC
Confidence 4456666665431 121 123 4678888898888 89999999999999999999999999999999864
No 183
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.29 E-value=0.0041 Score=64.67 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=52.7
Q ss_pred HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHH-hCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kala-lGAd~V~igr~~l~~ 311 (366)
.+.||..|.+..- -|+. .-..++.+..+.+.+ ++|||++||+.+.+|+.+++. .|||++..++.|-|.
T Consensus 448 ~~~Gageil~t~id~DGt~---~G~d~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~ 518 (538)
T PLN02617 448 EELGAGEILLNCIDCDGQG---KGFDIELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRK 518 (538)
T ss_pred HhcCCCEEEEeeccccccc---cCcCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccC
Confidence 5678877776432 1211 124678888888887 899999999999999999998 679999999888764
No 184
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.27 E-value=0.0013 Score=60.25 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=55.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|||-++.-.-.. ..++..+.++.+.++++.+ .+|+.+-|||++-+|+-+.|.+|||-|.|.++-+.
T Consensus 40 ~e~GADElvFlDItA-s~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 40 NEEGADELVFLDITA-SSEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred HHcCCCeEEEEeccc-ccccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 889999998543211 1122345778899999888 89999999999999999999999999999998764
No 185
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.26 E-value=0.0049 Score=56.92 Aligned_cols=91 Identities=13% Similarity=0.090 Sum_probs=62.5
Q ss_pred HHHHHHhcCCCEEEEe--ccCHHH----HHcCCcEEEEcCCCccC-CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 217 VKWLQTITKLPILVKG--VLTAED----VQAGAAGIIVSNHGARQ-LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 217 i~~lr~~~~~pv~vK~--v~~~~d----~~aGad~I~vs~~gg~~-~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
++.+|+..+--.++.. ..+.++ .+.|+|+|.++.-.-.. .+..+..++.+.++.+.+ ++||++-||| +.+
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~ 176 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLA 176 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHH
Confidence 4555555432234432 224554 57899999987542111 112233466777777766 7999999999 899
Q ss_pred HHHHHHHhCcCEEEecHHHHH
Q 017781 290 DVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l~ 310 (366)
++.+++..||++|.+-+.++.
T Consensus 177 n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 177 SAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred HHHHHHHhCCCEEEEhHHhhC
Confidence 999999999999999999864
No 186
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=97.26 E-value=0.043 Score=50.29 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=72.8
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCC---CceEEEecCCCC
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRR 287 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~i~vi~~GGI~~ 287 (366)
+.++.|++. ++++-+-.+.+.+. .++|+++| +-+-||--+.+...++.+.++.+.+.. +..|++ .|+|+
T Consensus 92 ~ai~~L~~~-gi~v~~T~V~s~~Qa~~Aa~AGA~yv--sP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~-As~r~ 167 (211)
T cd00956 92 KAIKKLSEE-GIKTNVTAIFSAAQALLAAKAGATYV--SPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILA-ASIRN 167 (211)
T ss_pred HHHHHHHHc-CCceeeEEecCHHHHHHHHHcCCCEE--EEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEe-cccCC
Confidence 456666665 88999999999887 99999984 555566555666677777777665421 344555 56999
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
..++..++.+|||.|-+.-.++..+..
T Consensus 168 ~~ei~~a~~~Gad~vTv~~~vl~~l~~ 194 (211)
T cd00956 168 PQHVIEAALAGADAITLPPDVLEQLLK 194 (211)
T ss_pred HHHHHHHHHcCCCEEEeCHHHHHHHhc
Confidence 999999999999999999988877653
No 187
>PRK06801 hypothetical protein; Provisional
Probab=97.23 E-value=0.075 Score=51.01 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=68.5
Q ss_pred HHcCCcEEEEcCCCccCCCCC--cchHHHHHHHHHHcCCCceEEEecC--CCCHHHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~i~vi~~GG--I~~~~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
.+.|+|.+-++...-+....+ ...++.|.++++.+ ++|+++-|| |. .+++.+++.+|++.|-+++.+..+...
T Consensus 166 ~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv~T~~~~a~~~ 242 (286)
T PRK06801 166 DRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKINFYTGMSQAALA 242 (286)
T ss_pred HHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEEEehhHHHHHHHH
Confidence 478999999853211112222 24788999999887 799999998 75 678999999999999999987654210
Q ss_pred -------cCH-------HHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 315 -------EGE-------KGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 315 -------~G~-------~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
..+ .-.....+.+++..+..|+++|..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 283 (286)
T PRK06801 243 AVEQRMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGSA 283 (286)
T ss_pred HHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 111 113334456677777788887754
No 188
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.21 E-value=0.0033 Score=59.94 Aligned_cols=84 Identities=20% Similarity=0.219 Sum_probs=61.1
Q ss_pred HHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHH
Q 017781 216 DVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 291 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv 291 (366)
.++.+|+..+...+.-.+-+.++ .++|+|+|.+.|- ..+.+.++.+..++++|+.++||| +.+.+
T Consensus 179 av~~~r~~~~~~~I~VEv~tleea~eA~~~gaD~I~LD~~----------~~e~l~~~v~~~~~~i~leAsGGI-t~~ni 247 (277)
T PRK05742 179 AVAAAHRIAPGKPVEVEVESLDELRQALAAGADIVMLDEL----------SLDDMREAVRLTAGRAKLEASGGI-NESTL 247 (277)
T ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCcEEEECCC-CHHHH
Confidence 46777776432223233456666 8899999987652 345566666655558999999999 69999
Q ss_pred HHHHHhCcCEEEecHHHHH
Q 017781 292 FKALALGASGIFIGRPVVY 310 (366)
Q Consensus 292 ~kalalGAd~V~igr~~l~ 310 (366)
.++.+.|+|.+.+|.+...
T Consensus 248 ~~~a~tGvD~Isvg~lt~s 266 (277)
T PRK05742 248 RVIAETGVDYISIGAMTKD 266 (277)
T ss_pred HHHHHcCCCEEEEChhhcC
Confidence 9999999999999987643
No 189
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=97.21 E-value=0.043 Score=54.39 Aligned_cols=203 Identities=21% Similarity=0.251 Sum_probs=110.8
Q ss_pred CCCCCccceeEcCcccC--Cc-eEecccccccccCChhhHHHHHHHHHcCCceecCC-CCCCCHHHHhccCCCceEEEee
Q 017781 55 DVSKIDMNTTVLGFKIS--MP-IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-WSTSSVEEVASTGPGIRFFQLY 130 (366)
Q Consensus 55 ~~~~vd~st~l~g~~l~--~P-i~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~-~~~~~~e~i~~~~~~~~~~Qly 130 (366)
....-|+.+.+.+..+. .| ++++|.. +-..+.-..+|+.+++.|+.+.-.. +.+. . .|+.||
T Consensus 99 ~~~~~~~~~~~~~~~~g~~~~~~iaGpc~---iE~~~~~~~~A~~lk~~g~~~~r~~~~kpR-------t--sp~~f~-- 164 (360)
T PRK12595 99 KKKPEDTIVDVKGEVIGDGNQSFIFGPCS---VESYEQVEAVAKALKAKGLKLLRGGAFKPR-------T--SPYDFQ-- 164 (360)
T ss_pred ccCCCCCEEEECCEEecCCCeeeEEeccc---ccCHHHHHHHHHHHHHcCCcEEEccccCCC-------C--CCcccc--
Confidence 33344555555444332 34 4556632 2223344688888999888877632 1111 1 345555
Q ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCC
Q 017781 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (366)
Q Consensus 131 ~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (366)
+-..+....+.+.+++.|...+. ++-- .+.-+....+ ++. +. + +..
T Consensus 165 -g~~~e~l~~L~~~~~~~Gl~~~t-~v~d----~~~~~~l~~~-vd~-lk-----------I---------------~s~ 210 (360)
T PRK12595 165 -GLGVEGLKILKQVADEYGLAVIS-EIVN----PADVEVALDY-VDV-IQ-----------I---------------GAR 210 (360)
T ss_pred -CCCHHHHHHHHHHHHHcCCCEEE-eeCC----HHHHHHHHHh-CCe-EE-----------E---------------Ccc
Confidence 33446666777777888876653 2111 1111221111 110 00 0 001
Q ss_pred C-CCHHHHHHHHHhcCCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCC---CCcchHHHHHHHHHHcCCC
Q 017781 211 S-LSWKDVKWLQTITKLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGR 276 (366)
Q Consensus 211 ~-~~~~~i~~lr~~~~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~---~~~~~~~~l~~i~~~~~~~ 276 (366)
. ..+..++.+.+ +++||++|.. .+.+| .+.|.+-|++.-+|-+... .....+..++.+++.. .
T Consensus 211 ~~~n~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~ 287 (360)
T PRK12595 211 NMQNFELLKAAGR-VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--H 287 (360)
T ss_pred cccCHHHHHHHHc-cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--C
Confidence 1 23456666665 5899999966 37776 6678765655433432211 1123677888887765 6
Q ss_pred ceEEEecCCCCH----H--HHHHHHHhCcCEEEecHHH
Q 017781 277 IPVFLDGGVRRG----T--DVFKALALGASGIFIGRPV 308 (366)
Q Consensus 277 i~vi~~GGI~~~----~--dv~kalalGAd~V~igr~~ 308 (366)
+||++|.+=..| . -...|+++|||+++|-+-|
T Consensus 288 ~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 288 LPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 899996432222 2 3445789999999999877
No 190
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.20 E-value=0.0057 Score=54.92 Aligned_cols=77 Identities=23% Similarity=0.275 Sum_probs=56.3
Q ss_pred eccCHHH----HHcCCcEEEEcCCCccC--CCC-CcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEe
Q 017781 232 GVLTAED----VQAGAAGIIVSNHGARQ--LDY-VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 232 ~v~~~~d----~~aGad~I~vs~~gg~~--~~~-~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~i 304 (366)
.+.+.++ .+.|+|+|.++.-.-+. ... .+..++.+.++.+..+ ++||++.||| +.+++.+++.+||++|.+
T Consensus 102 s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 102 STHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI-DIPIVAIGGI-TLENAAEVLAAGADGVAV 179 (196)
T ss_pred eCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 3456665 67899999987643211 111 2225677777776543 5999999999 689999999999999999
Q ss_pred cHHHHH
Q 017781 305 GRPVVY 310 (366)
Q Consensus 305 gr~~l~ 310 (366)
|+.++.
T Consensus 180 ~~~i~~ 185 (196)
T TIGR00693 180 VSAIMQ 185 (196)
T ss_pred hHHhhC
Confidence 998863
No 191
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.20 E-value=0.00062 Score=63.35 Aligned_cols=49 Identities=31% Similarity=0.424 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
+..+.+.++.+.+ .+||++.|||++.+|+.+++.+||++|.+|+++..+
T Consensus 176 ~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 176 PDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred cCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcC
Confidence 5678888888876 799999999999999999999999999999998754
No 192
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.16 E-value=0.0011 Score=61.92 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=52.6
Q ss_pred HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh-----C-cCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-ASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal-----G-Ad~V~igr~~l~ 310 (366)
.+.|+..|++..- -|+. .| +.++.+.++++.. ++|||++|||++.+|+.++..+ | +++|.+|+++..
T Consensus 154 ~~~g~~~ii~tdI~rdGt~--~G-~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~ 228 (241)
T PRK14114 154 KEYGLEEIVHTEIEKDGTL--QE-HDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLE 228 (241)
T ss_pred HhcCCCEEEEEeechhhcC--CC-cCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHC
Confidence 4567777776531 1211 22 5788888888876 8999999999999999999987 6 999999999865
Q ss_pred H
Q 017781 311 S 311 (366)
Q Consensus 311 ~ 311 (366)
+
T Consensus 229 g 229 (241)
T PRK14114 229 G 229 (241)
T ss_pred C
Confidence 3
No 193
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.15 E-value=0.0015 Score=60.71 Aligned_cols=68 Identities=28% Similarity=0.491 Sum_probs=53.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.+.|+|.+.+-...+ ........++.+.++.+.. .+|++++|||++.+|+.+++.+|||.|.+|+..+
T Consensus 42 ~~~G~~~l~i~dl~~-~~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 42 VDAGAETLHLVDLDG-AFEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHcCCCEEEEEechh-hhcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 567888887654321 1112345677888888876 7999999999999999999999999999999765
No 194
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.15 E-value=0.0019 Score=59.78 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=54.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|++.+.+..-.+ ........++.+.++++.+ .+||+++|||++.+|+.+++..||+.|.+|+..+.
T Consensus 40 ~~~g~~~i~i~dl~~-~~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 40 NAKGADELIVLDIDA-SKRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred HHcCCCEEEEEeCCC-cccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 467888887654332 1112345778888898877 79999999999999999999999999999988754
No 195
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.13 E-value=0.002 Score=59.87 Aligned_cols=50 Identities=28% Similarity=0.415 Sum_probs=44.5
Q ss_pred CcchHHHHHHHHHHcCCCc-eEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 259 VPATIMALEEVVKATQGRI-PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 259 ~~~~~~~l~~i~~~~~~~i-~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+...+.+.++++.+ +. ||++.||||+.+++.+++..|||.|.+|+.+..
T Consensus 168 ~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 168 DPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE 218 (232)
T ss_pred CCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence 455678888888877 66 999999999999999999999999999999874
No 196
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.12 E-value=0.041 Score=52.66 Aligned_cols=98 Identities=13% Similarity=0.240 Sum_probs=70.1
Q ss_pred HHcCCcEEEEcC---CCccCCCCCc-chHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~-~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|.+-++. ||-+ .+| -.++.|.+|++.+ ++|+..-||=..+ +++.+++.+|+.-|-++|-+..+..
T Consensus 163 ~~TgvD~LAvaiGt~HG~Y---~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~a~~ 237 (283)
T PRK07998 163 ERTGCDMLAVSIGNVHGLE---DIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLRKAFI 237 (283)
T ss_pred HHhCcCeeehhccccccCC---CCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHHHHHH
Confidence 678999999875 4432 232 2478999999988 8999999987777 6677899999999999997654321
Q ss_pred h-------cCH------HHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 314 A-------EGE------KGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 314 ~-------~G~------~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
. ..+ .-.....+.+++..+..|+.+|..
T Consensus 238 ~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 278 (283)
T PRK07998 238 TTVGKAYVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSN 278 (283)
T ss_pred HHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0 010 123344566778888888888864
No 197
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.12 E-value=0.0056 Score=58.71 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCC-CEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCC
Q 017781 215 KDVKWLQTITKL-PILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVR 286 (366)
Q Consensus 215 ~~i~~lr~~~~~-pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~ 286 (366)
+.++.+|+..+. ..+--.+.+.++ .++|+|.|-++|- ++ +.+.++.+.+ ..++++.++|||
T Consensus 184 ~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~-------~~---e~l~~av~~~~~~~~~i~leAsGGI- 252 (288)
T PRK07428 184 EAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNM-------PV---DLMQQAVQLIRQQNPRVKIEASGNI- 252 (288)
T ss_pred HHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCC-------CH---HHHHHHHHHHHhcCCCeEEEEECCC-
Confidence 458888887652 223234467776 8999999998863 23 3334433332 357999999999
Q ss_pred CHHHHHHHHHhCcCEEEecHHHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+.+.+.++.+.|+|.+.+|+++..
T Consensus 253 t~~ni~~ya~tGvD~Isvgsl~~s 276 (288)
T PRK07428 253 TLETIRAVAETGVDYISSSAPITR 276 (288)
T ss_pred CHHHHHHHHHcCCCEEEEchhhhC
Confidence 699999999999999999997753
No 198
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.12 E-value=0.0057 Score=58.03 Aligned_cols=82 Identities=22% Similarity=0.230 Sum_probs=62.3
Q ss_pred HHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 216 DVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 216 ~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
.++.+|+..+ ...+.-.+-+.++ .++|+|+|-+++- ..+.++++.+.++..+|+.++||| +.+.
T Consensus 167 av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~AsGGI-~~~n 235 (265)
T TIGR00078 167 AVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLEASGGI-TLDN 235 (265)
T ss_pred HHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEEEECCC-CHHH
Confidence 4888888764 2334444567776 8999999988662 225666666666446999999999 6999
Q ss_pred HHHHHHhCcCEEEecHHH
Q 017781 291 VFKALALGASGIFIGRPV 308 (366)
Q Consensus 291 v~kalalGAd~V~igr~~ 308 (366)
+....+.|||.+.+|..+
T Consensus 236 i~~~a~~Gvd~Isvgait 253 (265)
T TIGR00078 236 LEEYAETGVDVISSGALT 253 (265)
T ss_pred HHHHHHcCCCEEEeCHHH
Confidence 999999999999997654
No 199
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.09 E-value=0.002 Score=59.95 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=52.6
Q ss_pred cCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 241 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 241 aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.|||.+.+-.-.+. ..+.+..++.+.++.+.+ .+||.+.|||||-+|+.+++.+||+.|.+|+..+
T Consensus 44 ~Ga~~l~ivDLd~a-~~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~ 109 (234)
T PRK13587 44 ECVNRIHIVDLIGA-KAQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGI 109 (234)
T ss_pred cCCCEEEEEECccc-ccCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHh
Confidence 58888886432111 123446788899998877 7999999999999999999999999999999764
No 200
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.09 E-value=0.01 Score=54.04 Aligned_cols=87 Identities=28% Similarity=0.360 Sum_probs=59.0
Q ss_pred HHHHHHhc-CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCC-----------CCCcchHHHHHHHHHHcC
Q 017781 217 VKWLQTIT-KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQL-----------DYVPATIMALEEVVKATQ 274 (366)
Q Consensus 217 i~~lr~~~-~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~-----------~~~~~~~~~l~~i~~~~~ 274 (366)
.++.|+.. ++|+.|-.- +..++ .++|+|.|.- .||+.. ...-|++.+..+|.+++
T Consensus 109 t~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQT--EGgtss~p~~~g~lglIekaapTLAaay~ISr~v- 185 (242)
T PF04481_consen 109 TRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQT--EGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV- 185 (242)
T ss_pred HHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEc--CCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc-
Confidence 44555544 466666532 33333 8999998853 444321 11235666677777777
Q ss_pred CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 275 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 275 ~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
++||+..+|+..-. +=-|+++||.+|++|+.+
T Consensus 186 -~iPVlcASGlS~vT-~PmAiaaGAsGVGVGSav 217 (242)
T PF04481_consen 186 -SIPVLCASGLSAVT-APMAIAAGASGVGVGSAV 217 (242)
T ss_pred -CCceEeccCcchhh-HHHHHHcCCcccchhHHh
Confidence 89999999997655 445899999999999876
No 201
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.0015 Score=59.82 Aligned_cols=68 Identities=21% Similarity=0.393 Sum_probs=52.8
Q ss_pred HHcCCcEEEEcCCC-ccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++||..|-=-+.. |+ .-|+-+...|..+.+.. ++|||+|-||.++.|++.++++|+|+|++-+++-.
T Consensus 148 ee~GcaavMPl~aPIGS--g~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~ 216 (262)
T COG2022 148 EEAGCAAVMPLGAPIGS--GLGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAR 216 (262)
T ss_pred HhcCceEeccccccccC--CcCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHhcccceeehhhHhhc
Confidence 89999887521110 11 12455667787777777 89999999999999999999999999999998743
No 202
>PRK01362 putative translaldolase; Provisional
Probab=97.08 E-value=0.13 Score=47.25 Aligned_cols=95 Identities=22% Similarity=0.164 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcC---CCceEEEecCCCC
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRR 287 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGI~~ 287 (366)
+.++.|++. ++++-+=.+.+... .++|+++|.. .-||-.+.+...+..+.++.+.+. .+..|++ ..+|+
T Consensus 92 ~a~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-AS~r~ 167 (214)
T PRK01362 92 KAVKALSKE-GIKTNVTLIFSANQALLAAKAGATYVSP--FVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-ASVRH 167 (214)
T ss_pred HHHHHHHHC-CCceEEeeecCHHHHHHHHhcCCcEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-eecCC
Confidence 445666554 89999999999887 8999997753 445555566667777777766552 2455555 45999
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
..++.+++.+|||.+-+.-.++..+.
T Consensus 168 ~~~v~~~~~~G~d~iTi~~~vl~~l~ 193 (214)
T PRK01362 168 PMHVLEAALAGADIATIPYKVIKQLF 193 (214)
T ss_pred HHHHHHHHHcCCCEEecCHHHHHHHH
Confidence 99999999999999999988887765
No 203
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.08 E-value=0.0063 Score=57.91 Aligned_cols=83 Identities=25% Similarity=0.262 Sum_probs=60.9
Q ss_pred HHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCC--CceEEEecCCCC
Q 017781 215 KDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRR 287 (366)
Q Consensus 215 ~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~--~i~vi~~GGI~~ 287 (366)
..++.+|+..+ ...+.-.+.+.++ .++|+|+|-+.+-. .+.+.++.+.++. ++||.++||| +
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~----------~e~l~~~v~~i~~~~~i~i~asGGI-t 237 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMS----------PEELKEAVKLLKGLPRVLLEASGGI-T 237 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhccCCCeEEEEECCC-C
Confidence 35888888874 2334445567776 78999999886632 2444555444433 7899999999 5
Q ss_pred HHHHHHHHHhCcCEEEecHHH
Q 017781 288 GTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~ 308 (366)
.+.+.+..+.|||++.+|..+
T Consensus 238 ~~ni~~~a~~Gad~Isvgal~ 258 (269)
T cd01568 238 LENIRAYAETGVDVISTGALT 258 (269)
T ss_pred HHHHHHHHHcCCCEEEEcHHH
Confidence 899999999999999998654
No 204
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.07 E-value=0.0024 Score=58.93 Aligned_cols=69 Identities=30% Similarity=0.463 Sum_probs=53.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|++.+.+-.-.+. ..+....++.+.++++.+ .+|+.+.|||++.+|+.+++.+|||.|.+|+..+.
T Consensus 38 ~~~g~~~l~v~dl~~~-~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 38 EEEGAERIHVVDLDGA-KEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred HHcCCCEEEEEeCCcc-ccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 5678888886543221 123345678888888877 79999999999999999999999999999987653
No 205
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.07 E-value=0.007 Score=57.12 Aligned_cols=83 Identities=23% Similarity=0.351 Sum_probs=57.9
Q ss_pred HHHHHHhcCCCEEEEec--------cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 217 VKWLQTITKLPILVKGV--------LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 217 i~~lr~~~~~pv~vK~v--------~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
+..+...+++|+++... .+.+. .++|||+|.++.. ...+.+.++.+.. .+||.
T Consensus 128 i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~--~iPVv 196 (258)
T TIGR01949 128 IAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT---------GDIDSFRDVVKGC--PAPVV 196 (258)
T ss_pred HHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--CCcEE
Confidence 34444456889888422 12121 6899999987521 2466777777665 79999
Q ss_pred EecCCC--CHHHHH----HHHHhCcCEEEecHHHHH
Q 017781 281 LDGGVR--RGTDVF----KALALGASGIFIGRPVVY 310 (366)
Q Consensus 281 ~~GGI~--~~~dv~----kalalGAd~V~igr~~l~ 310 (366)
+.|||+ +.+++. .++.+||+++.+|+.++.
T Consensus 197 a~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 197 VAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 999999 655554 455899999999998864
No 206
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.06 E-value=0.01 Score=58.43 Aligned_cols=90 Identities=21% Similarity=0.244 Sum_probs=63.4
Q ss_pred HHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccC--CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 218 KWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 218 ~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
...|+..+ ..++--.+.+.++ .+.|+|+|.++-...+. .+..+..++.+..+.+.. ++||++-|||. .++
T Consensus 231 ~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~n 307 (347)
T PRK02615 231 AVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KSN 307 (347)
T ss_pred HHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHH
Confidence 44455442 2344334456766 67899999987644321 112244567777777666 79999999994 899
Q ss_pred HHHHHHhCcCEEEecHHHHH
Q 017781 291 VFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 291 v~kalalGAd~V~igr~~l~ 310 (366)
+.+.+.+||++|.+++.++.
T Consensus 308 i~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 308 IPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred HHHHHHcCCcEEEEeHHHhC
Confidence 99999999999999999864
No 207
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.05 E-value=0.0019 Score=59.95 Aligned_cols=49 Identities=20% Similarity=0.463 Sum_probs=43.7
Q ss_pred CcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 259 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 259 ~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.++.++.+.++.+.+ .+||+++|||++-+|+.+++.+||+.|.+|+..+
T Consensus 58 ~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 58 KPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred CcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 346788899998876 7999999999999999999999999999998764
No 208
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.02 E-value=0.0017 Score=61.00 Aligned_cols=62 Identities=23% Similarity=0.188 Sum_probs=52.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|++.+.|-.= +.+..+.+.++.+.+ .+||.+.||||+ +++.+++.+||+.|.+|+..+.
T Consensus 48 ~~~Ga~~lHvVDL-------g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~ 109 (253)
T TIGR02129 48 KDDGVKGCHVIML-------GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT 109 (253)
T ss_pred HHcCCCEEEEEEC-------CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence 7789999886432 334788999999887 799999999998 9999999999999999997653
No 209
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.01 E-value=0.0058 Score=58.10 Aligned_cols=83 Identities=23% Similarity=0.238 Sum_probs=63.7
Q ss_pred HHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 216 DVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 216 ~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
.++.+|+..+ ...+.-.+-+.++ .++|+|+|-+++- ..+.+.++.+.++.++|+.++||| +.+.
T Consensus 171 ~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI-~~~n 239 (268)
T cd01572 171 AVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGI-TLEN 239 (268)
T ss_pred HHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCC-CHHH
Confidence 4788888764 2233334567766 8899999988763 246677777666446999999999 6999
Q ss_pred HHHHHHhCcCEEEecHHHH
Q 017781 291 VFKALALGASGIFIGRPVV 309 (366)
Q Consensus 291 v~kalalGAd~V~igr~~l 309 (366)
+.+..+.|+|.+.+|+++.
T Consensus 240 i~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 240 IRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHcCCCEEEEEeeec
Confidence 9999999999999998764
No 210
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.00 E-value=0.2 Score=48.26 Aligned_cols=70 Identities=21% Similarity=0.403 Sum_probs=54.4
Q ss_pred HHcCCcEEEEc--C-CCccCCCCCcchHHHHHHHHHHcCCCceEEEecC--CCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG--I~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.+-++ + ||-+.-....-.++.|.++++.+. ++|+++=|| | +.+++.+++..|++.|-+++.+..
T Consensus 163 ~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiNv~T~i~~ 237 (293)
T PRK07315 163 VETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGI-PDDQIQEAIKLGVAKVNVNTECQI 237 (293)
T ss_pred HHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCC-CHHHHHHHHHcCCCEEEEccHHHH
Confidence 77899999998 4 553221112356789999998872 499999998 7 568899999999999999998764
No 211
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=96.99 E-value=0.016 Score=52.92 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=44.6
Q ss_pred cCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCC---CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 241 AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 241 aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~---~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.++|+|.+... |++.....+...+.+.++++..+. ..+|.++|||+. +++.+++..|||.|.+|++++.
T Consensus 130 ~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 130 DLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred hhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhC
Confidence 46787766432 221111222334555555554421 145779999988 7999999999999999999864
No 212
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=96.98 E-value=0.078 Score=49.22 Aligned_cols=66 Identities=14% Similarity=0.285 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHH
Q 017781 262 TIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 332 (366)
Q Consensus 262 ~~~~l~~i~~~~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~ 332 (366)
.++-+.++++... .++.|.+||||. .+-+.+..++|||.+.+|+..+|.. .+...+.++.++..++
T Consensus 152 ~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~~----~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 152 MLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFNL----DEDIDEAWDIMTAQIE 220 (229)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcCC----CCCHHHHHHHHHHHHH
Confidence 4455555555432 257799999997 5677788899999999998766631 1113345555555443
No 213
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=96.98 E-value=0.0084 Score=57.12 Aligned_cols=84 Identities=21% Similarity=0.253 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcC---CCceEEEecCCC
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVR 286 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGI~ 286 (366)
.+.++.+|+..+-..+.-.+.+.++ .++|+|+|-+++-. +.. +.++.+.++ .++|++++|||
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~~-------p~~---l~~~~~~~~~~~~~i~i~AsGGI- 239 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKFS-------PEE---LAELVPKLRSLAPPVLLAAAGGI- 239 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCCC-------HHH---HHHHHHHHhccCCCceEEEECCC-
Confidence 3567888876532223333467766 88999999887632 222 233333222 36999999999
Q ss_pred CHHHHHHHHHhCcCEEEecHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~ 308 (366)
+.+.+.+..+.|+|++.+|..+
T Consensus 240 ~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 240 NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred CHHHHHHHHHcCCcEEEEChhh
Confidence 8999999999999999877654
No 214
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=96.97 E-value=0.2 Score=46.22 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCC
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVR 286 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~ 286 (366)
.+.++.|++. ++++-+-.+.+.+. .++||++|. -.-||--+.|......+.++.+.+ ..+..|++.+ +|
T Consensus 95 l~Ai~~L~~~-Gi~vn~T~ifs~~Qa~~Aa~aGa~yvs--PyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS-~r 170 (222)
T PRK12656 95 LAAIKTLKAE-GYHITATAIYTVFQGLLAIEAGADYLA--PYYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAAS-FK 170 (222)
T ss_pred HHHHHHHHHC-CCceEEeeeCCHHHHHHHHHCCCCEEe--cccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEe-cC
Confidence 3456666554 89999999999987 899998874 344554444444455555555443 3356677766 99
Q ss_pred CHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 287 RGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
+..++.+++.+|||.+-+.-.++..+.
T Consensus 171 ~~~~v~~a~~~G~d~vTvp~~vl~~l~ 197 (222)
T PRK12656 171 NVAQVNKAFALGAQAVTAGPDVFEAAF 197 (222)
T ss_pred CHHHHHHHHHcCCCEEecCHHHHHHHh
Confidence 999999999999999999988887764
No 215
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=96.96 E-value=0.18 Score=46.52 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCCC
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 287 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~~ 287 (366)
+.++.|++. ++++-+=.+.+... ..+|+++|.. .-||--+.|...+..+.++.+.+ +.+..|++.+ +|+
T Consensus 94 ~Ai~~L~~~-GI~vn~T~vfs~~Qa~~Aa~aGa~yIsp--yvgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILaAS-~r~ 169 (220)
T PRK12655 94 AAIKKLKKE-GIPTLGTAVYSAAQGLLAALAGAKYVAP--YVNRVDAQGGDGIRMVQELQTLLEMHAPESMVLAAS-FKT 169 (220)
T ss_pred HHHHHHHHC-CCceeEeEecCHHHHHHHHHcCCeEEEe--ecchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEEEe-cCC
Confidence 445556553 89999999999887 7899987753 33443334444555555555543 2355666655 999
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhhhcC--HHHHHHHHHHH
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEML 327 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~~~G--~~gv~~~~~~l 327 (366)
..++.+++.+|||.+-+.-.++..+...- .++++.+.+.|
T Consensus 170 ~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw 211 (220)
T PRK12655 170 PRQALDCLLAGCQSITLPLDVAQQMLNTPAVESAIEKFEQDW 211 (220)
T ss_pred HHHHHHHHHcCCCEEECCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 99999999999999999998888765321 24555444443
No 216
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.95 E-value=0.057 Score=51.27 Aligned_cols=81 Identities=16% Similarity=0.107 Sum_probs=58.7
Q ss_pred CHHHHHHHHHhcCCCEEEEeccC-HHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTITKLPILVKGVLT-AED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~-~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
+.++|+++++.+++||+-|.-.. ..+ .++|+|.|..+..- .|.-+.+..+++.. ++|+++ |++|
T Consensus 53 ~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT~r~-------rP~~~~~~~iK~~~--~~l~MA--D~st 121 (283)
T cd04727 53 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVL-------TPADEEHHIDKHKF--KVPFVC--GARN 121 (283)
T ss_pred CHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEeccCCC-------CcHHHHHHHHHHHc--CCcEEc--cCCC
Confidence 56899999999999999875433 333 99999999533211 12344556665544 555554 6999
Q ss_pred HHHHHHHHHhCcCEEEe
Q 017781 288 GTDVFKALALGASGIFI 304 (366)
Q Consensus 288 ~~dv~kalalGAd~V~i 304 (366)
-+++..+..+|||.|.-
T Consensus 122 leEal~a~~~Gad~I~T 138 (283)
T cd04727 122 LGEALRRISEGAAMIRT 138 (283)
T ss_pred HHHHHHHHHCCCCEEEe
Confidence 99999999999998853
No 217
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.94 E-value=0.006 Score=57.61 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=54.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|++.+.+..-.+. .....+.++.+.++.+.. .+||+++|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 40 ~~~g~~~l~i~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 40 NEKEVDELIVLDIDAS-KRGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE 108 (258)
T ss_pred HHcCCCEEEEEECCCC-cCCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence 5678888887653221 012345788899998876 79999999999999999999999999999987643
No 218
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.92 E-value=0.0036 Score=58.69 Aligned_cols=68 Identities=19% Similarity=0.120 Sum_probs=50.2
Q ss_pred HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHH---HhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL---ALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kal---alGAd~V~igr~~l~~ 311 (366)
.+.|+..|++..- -|+. .| +.++.+.++++.. ++|||++|||++.+|+.+.- ..|+++|.+|++|..+
T Consensus 159 ~~~g~~~ii~tdI~~dGt~--~G-~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g 231 (243)
T TIGR01919 159 DSGGCSRVVVTDSKKDGLS--GG-PNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYAR 231 (243)
T ss_pred HhCCCCEEEEEecCCcccC--CC-cCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcC
Confidence 3456666766542 2221 23 5777888888776 79999999999999999763 3599999999998653
No 219
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=96.92 E-value=0.039 Score=55.19 Aligned_cols=67 Identities=25% Similarity=0.342 Sum_probs=49.2
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
...++|.|.++. +.......+.++.+.++++. ..+++|.++|||. .+++-+++.+|||.+.+||.+.
T Consensus 296 l~~~vD~Vllht--~vdp~~~~~~~~kI~~ikk~-~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf 362 (391)
T PRK13307 296 LKVKPDVVELHR--GIDEEGTEHAWGNIKEIKKA-GGKILVAVAGGVR-VENVEEALKAGADILVVGRAIT 362 (391)
T ss_pred hhCCCCEEEEcc--ccCCCcccchHHHHHHHHHh-CCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 466889887753 11111224566777777765 3478999999998 8888899999999999999854
No 220
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=96.90 E-value=0.018 Score=52.08 Aligned_cols=36 Identities=39% Similarity=0.787 Sum_probs=31.5
Q ss_pred CCceE--EEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 275 GRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 275 ~~i~v--i~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+++|| ++.|||.|+.|++-.+.||+|+|.+|+-++.
T Consensus 206 GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 206 GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred CCCceEEecccCcCChhHHHHHHHcCCCeEEecccccc
Confidence 36775 7999999999999999999999999986543
No 221
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.039 Score=50.37 Aligned_cols=100 Identities=19% Similarity=0.239 Sum_probs=66.9
Q ss_pred cCCCEEEEec--cCHHH----HH-cCCcEEEEcCCCcc--CCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHH
Q 017781 224 TKLPILVKGV--LTAED----VQ-AGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 294 (366)
Q Consensus 224 ~~~pv~vK~v--~~~~d----~~-aGad~I~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~ka 294 (366)
+++-+.+=.+ .++++ .+ +|+|.+.++ -|+ |..+--+.++.|.++.+.......|-+.||| +++++-..
T Consensus 105 ~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H--~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI-~~~~i~~~ 181 (217)
T COG0269 105 YGKEVQIDLIGVWDPEQRAKWLKELGVDQVILH--RGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGI-TPEDIPLF 181 (217)
T ss_pred cCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEE--ecccHhhcCCCccHHHHHHHHHhhccCceEEEecCC-CHHHHHHH
Confidence 4555555544 34555 44 999999884 343 2222233467777777765334789999999 68999999
Q ss_pred HHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHH
Q 017781 295 LALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 332 (366)
Q Consensus 295 lalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~ 332 (366)
...|++.|.+||.+.. ...+.+..+.+++++.
T Consensus 182 ~~~~~~ivIvGraIt~------a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 182 KGIGADIVIVGRAITG------AKDPAEAARKFKEEID 213 (217)
T ss_pred hcCCCCEEEECchhcC------CCCHHHHHHHHHHHHh
Confidence 9999999999998753 3333445555665553
No 222
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=96.87 E-value=0.0012 Score=63.66 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=54.2
Q ss_pred EEeccCHHH----HHcCCcEEEEcC--CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEE
Q 017781 230 VKGVLTAED----VQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 303 (366)
Q Consensus 230 vK~v~~~~d----~~aGad~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ 303 (366)
+=...++.. .++|+-+|---+ -|. ..|....+.+..+.+.. ++||+.++||.+++|+.+|+++|||+|.
T Consensus 202 ~yc~~d~~~a~~l~~~g~~avmPl~~pIGs---g~gv~~p~~i~~~~e~~--~vpVivdAGIg~~sda~~AmelGadgVL 276 (326)
T PRK11840 202 VYCSDDPIAAKRLEDAGAVAVMPLGAPIGS---GLGIQNPYTIRLIVEGA--TVPVLVDAGVGTASDAAVAMELGCDGVL 276 (326)
T ss_pred EEeCCCHHHHHHHHhcCCEEEeeccccccC---CCCCCCHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 333445544 888984443211 111 12344667777777764 7999999999999999999999999999
Q ss_pred ecHHHHH
Q 017781 304 IGRPVVY 310 (366)
Q Consensus 304 igr~~l~ 310 (366)
+.+.+..
T Consensus 277 ~nSaIa~ 283 (326)
T PRK11840 277 MNTAIAE 283 (326)
T ss_pred Ecceecc
Confidence 9998753
No 223
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=96.83 E-value=0.004 Score=57.75 Aligned_cols=69 Identities=25% Similarity=0.379 Sum_probs=50.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.+.+-.=.+ ...+.+...+.+.++.+.+ .+||.++||||+.+|+.+.+.+||+.|.+|+..+.
T Consensus 39 ~~~g~~~l~ivDLda-a~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 39 NEQGADELHIVDLDA-AKEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHTT-SEEEEEEHHH-HCCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHcCCCEEEEEEccC-cccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 355777777543111 1123346778899999887 69999999999999999999999999999998764
No 224
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=96.80 E-value=0.34 Score=44.69 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=68.6
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCCC
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 287 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~~ 287 (366)
+.++.|++. ++++-+=.+.+.+. ..+||++|.. .-||--+.+...+..+.++.+.+ +.+..|++.+ +|+
T Consensus 94 ~A~~~L~~~-GI~vn~T~vfs~~Qa~~Aa~aGa~yIsp--yvgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILaAS-~r~ 169 (220)
T PRK12653 94 AAIKMLKAE-GIPTLGTAVYGAAQGLLSALAGAEYVAP--YVNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLAAS-FKT 169 (220)
T ss_pred HHHHHHHHc-CCCeeEEEecCHHHHHHHHhcCCcEEEe--ecChHhhcCCChHHHHHHHHHHHHhcCCCcEEEEEe-cCC
Confidence 445566554 89999999999887 8899998754 33443344444555555555543 2355666655 999
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
..++.+++.+|||.+-+.-.++..+.
T Consensus 170 ~~~v~~~~~~G~d~vTip~~vl~~l~ 195 (220)
T PRK12653 170 PRQALDCLLAGCESITLPLDVAQQMI 195 (220)
T ss_pred HHHHHHHHHcCCCEEECCHHHHHHHH
Confidence 99999999999999999999888764
No 225
>PRK08005 epimerase; Validated
Probab=96.80 E-value=0.097 Score=47.96 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
..++-+.++++... ...|.+||||. .+-+.+..++|||.+.+|+.+.
T Consensus 149 ~~~~KI~~l~~~~~-~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 149 AMCEKVSQSREHFP-AAECWADGGIT-LRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred HHHHHHHHHHHhcc-cCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhh
Confidence 34455555555442 34799999996 6677788899999999998753
No 226
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.80 E-value=0.021 Score=54.02 Aligned_cols=79 Identities=20% Similarity=0.342 Sum_probs=54.8
Q ss_pred HHHHHHHhcCCCEEEEecc------CHHH---------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE
Q 017781 216 DVKWLQTITKLPILVKGVL------TAED---------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~------~~~d---------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 280 (366)
.+.+-.+.|++|+++ ... +..+ .+.|||.|.+.= +. +.+.++.+.. .+||+
T Consensus 131 ~v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y----------~~-~~f~~vv~a~--~vPVv 196 (264)
T PRK08227 131 QLVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY----------VE-EGFERITAGC--PVPIV 196 (264)
T ss_pred HHHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC----------CH-HHHHHHHHcC--CCcEE
Confidence 344445568999887 221 1112 999999997621 12 5677777766 79999
Q ss_pred EecCCCCH-HHH----HHHHHhCcCEEEecHHH
Q 017781 281 LDGGVRRG-TDV----FKALALGASGIFIGRPV 308 (366)
Q Consensus 281 ~~GGI~~~-~dv----~kalalGAd~V~igr~~ 308 (366)
..||=+.. +|+ ..++..||.+|.+||=+
T Consensus 197 iaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNI 229 (264)
T PRK08227 197 IAGGKKLPERDALEMCYQAIDEGASGVDMGRNI 229 (264)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCceeeechhh
Confidence 99999853 334 35777899999999965
No 227
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.79 E-value=0.016 Score=55.33 Aligned_cols=84 Identities=24% Similarity=0.161 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCCEEE-EeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 215 KDVKWLQTITKLPILV-KGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~v-K~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
+.++.+|+..+-..++ =-+-+.++ .+.|+|+|.+.+ -..+.+.++++.++.++|+.+.||| +.+
T Consensus 176 ~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~----------~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ 244 (277)
T PRK08072 176 KAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN----------RTPDEIREFVKLVPSAIVTEASGGI-TLE 244 (277)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHhcCCCceEEEECCC-CHH
Confidence 4588888887522222 23456666 889999998853 2336677777766446889999999 899
Q ss_pred HHHHHHHhCcCEEEecHHHH
Q 017781 290 DVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l 309 (366)
.+....+.|+|.+.+|.+..
T Consensus 245 ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 245 NLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHcCCCEEEEChhhc
Confidence 99999999999999998764
No 228
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=96.79 E-value=0.0044 Score=57.61 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=53.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.+.|+|.+.+-.-.+. .+.....+.+.++.+.+ .+|+.+.||||+.+|+.+++.+||+-|.+|+..+
T Consensus 45 ~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 45 KELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred HHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence 5668888886542221 13455778888888877 6899999999999999999999999999999654
No 229
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=96.78 E-value=0.024 Score=51.58 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=101.6
Q ss_pred eeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhcc
Q 017781 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQI 208 (366)
Q Consensus 129 ly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (366)
+....+.+....+++.+-+.|+++|-||+++|....-.+.++..+. . .... ..-................++ .
T Consensus 18 Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p--~-~lIG-AGTVL~~~q~~~a~~aGa~fi---V 90 (211)
T COG0800 18 VIRGDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP--E-ALIG-AGTVLNPEQARQAIAAGAQFI---V 90 (211)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc--c-cEEc-cccccCHHHHHHHHHcCCCEE---E
Confidence 3345788888888988999999999999999988776677766653 1 1110 000000000000000011111 1
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 209 DRSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
.|.++-+.++..+. .++| ++=|+.|+-+ .++|++.+.+.-... .+|+..+..+ +....+++++-.||
T Consensus 91 sP~~~~ev~~~a~~-~~ip-~~PG~~TptEi~~Ale~G~~~lK~FPa~~---~Gg~~~~ka~----~gP~~~v~~~pTGG 161 (211)
T COG0800 91 SPGLNPEVAKAANR-YGIP-YIPGVATPTEIMAALELGASALKFFPAEV---VGGPAMLKAL----AGPFPQVRFCPTGG 161 (211)
T ss_pred CCCCCHHHHHHHHh-CCCc-ccCCCCCHHHHHHHHHcChhheeecCccc---cCcHHHHHHH----cCCCCCCeEeecCC
Confidence 35566666666555 4777 4457788877 999999999864321 1233222222 11123689999999
Q ss_pred CCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~~l 309 (366)
|. ...+...+++|+.+|++|+-+.
T Consensus 162 Vs-~~N~~~yla~gv~avG~Gs~l~ 185 (211)
T COG0800 162 VS-LDNAADYLAAGVVAVGLGSWLV 185 (211)
T ss_pred CC-HHHHHHHHhCCceEEecCcccc
Confidence 95 5599999999999999998665
No 230
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.77 E-value=0.047 Score=50.11 Aligned_cols=114 Identities=19% Similarity=0.274 Sum_probs=81.5
Q ss_pred eEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHh
Q 017781 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (366)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (366)
..+-+....+.+...++++.+.+.|++.+-||++.|.
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~------------------------------------------- 52 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPA------------------------------------------- 52 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCcc-------------------------------------------
Confidence 3555666788888889999999999999999866431
Q ss_pred hhccCCCCCHHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 205 AGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 205 ~~~~d~~~~~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
..+.|+.+++..+ +-|..-.+.+.++ .++|+|+++.-+. ..+.+..+.+ . .+|+
T Consensus 53 --------~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~----------~~~vi~~a~~-~--~i~~ 111 (212)
T PRK05718 53 --------ALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGL----------TPPLLKAAQE-G--PIPL 111 (212)
T ss_pred --------HHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHHH-c--CCCE
Confidence 2345777777764 4455556677776 9999999974331 2244544443 2 4444
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEe
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~i 304 (366)
+ =|+.|+.++..++.+||+.|-+
T Consensus 112 i--PG~~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 112 I--PGVSTPSELMLGMELGLRTFKF 134 (212)
T ss_pred e--CCCCCHHHHHHHHHCCCCEEEE
Confidence 4 4799999999999999999877
No 231
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=96.75 E-value=0.0076 Score=54.95 Aligned_cols=62 Identities=23% Similarity=0.349 Sum_probs=48.5
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
...|++.|.+-...|. ..+...+.+.++++.+ ++|+++.||||+.+++.+++..|||.|.+|
T Consensus 144 ~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 144 KYFGMKWVYLEAGSGA---SYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 4567888876442222 1223577888888877 799999999999999999999999999987
No 232
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=96.74 E-value=0.043 Score=52.08 Aligned_cols=80 Identities=18% Similarity=0.132 Sum_probs=58.1
Q ss_pred CHHHHHHHHHhcCCCEEEEeccC-HHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTITKLPILVKGVLT-AED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~-~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
+.+.|+++++.+++||+-|.-.. ..+ .++|+|.|.-|..- .|.-+....+++.. ++|++ .|+++
T Consensus 55 ~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~l-------rPade~~~~~K~~f--~vpfm--ad~~~ 123 (287)
T TIGR00343 55 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVL-------TPADWTFHIDKKKF--KVPFV--CGARD 123 (287)
T ss_pred CHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCCC-------CcHHHHHHHHHHHc--CCCEE--ccCCC
Confidence 56789999999999999986543 333 99999999643321 12334445454433 45555 57999
Q ss_pred HHHHHHHHHhCcCEEE
Q 017781 288 GTDVFKALALGASGIF 303 (366)
Q Consensus 288 ~~dv~kalalGAd~V~ 303 (366)
-++++.++.+|||.|.
T Consensus 124 l~EAlrai~~GadmI~ 139 (287)
T TIGR00343 124 LGEALRRINEGAAMIR 139 (287)
T ss_pred HHHHHHHHHCCCCEEe
Confidence 9999999999999885
No 233
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.74 E-value=0.015 Score=55.45 Aligned_cols=83 Identities=22% Similarity=0.289 Sum_probs=61.0
Q ss_pred HHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc-----CCCceEEEecC
Q 017781 215 KDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGG 284 (366)
Q Consensus 215 ~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~i~vi~~GG 284 (366)
+.++.+|+... .+ |.=.+-+.++ .++|+|.|.+.|. +.+.+.++++.+ +.++.+.++||
T Consensus 171 ~av~~~r~~~~~~k-IeVEv~~leea~~a~~agaDiI~LDn~----------~~e~l~~~v~~l~~~~~~~~~~leaSGG 239 (278)
T PRK08385 171 EAIRRAKEFSVYKV-VEVEVESLEDALKAAKAGADIIMLDNM----------TPEEIREVIEALKREGLRERVKIEVSGG 239 (278)
T ss_pred HHHHHHHHhCCCCc-EEEEeCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHHhcCcCCCEEEEEECC
Confidence 34778887653 44 3334567776 9999999988883 233444444433 24788999999
Q ss_pred CCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~~l 309 (366)
| +.+.+.++...|+|.+.+|.++.
T Consensus 240 I-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 240 I-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred C-CHHHHHHHHHcCCCEEEeChhhc
Confidence 9 89999999999999999998764
No 234
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=96.71 E-value=0.0041 Score=57.53 Aligned_cols=66 Identities=23% Similarity=0.354 Sum_probs=43.0
Q ss_pred HcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 240 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 240 ~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
=.|...|.+-...|+ .++.+ +.+.++++.+ .++|+|..||||+++++.+++..|||.|.+|+.|-.
T Consensus 151 ~~g~~~iYLEaGSGa---~~~v~-~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee 216 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGA---YGPVP-EEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEE 216 (230)
T ss_dssp HTT-SEEEEE--TTS---SS-HH-HHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHH
T ss_pred HhCCCEEEEEeCCCC---CCCcc-HHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEE
Confidence 345566665432221 12222 3344555555 389999999999999999999999999999998854
No 235
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=96.61 E-value=0.0052 Score=56.59 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=50.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
...|...|.+. ..|. ....+.+..+++.+. ++|+++.||||+.+++.+++.+|||.|.+|+.+..
T Consensus 145 e~~g~~ivyLe-~SG~-----~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 145 EYLGMPIVYLE-YSGA-----YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred HHcCCeEEEeC-CCCC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 55566666666 2221 245677777777653 68999999999999999999999999999998864
No 236
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=96.61 E-value=0.009 Score=55.12 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 260 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 260 ~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+-..+.+..+++.++ ++||+..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 164 ~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 164 PVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred CcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 345677888877663 69999999999999999999999999999998764
No 237
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=96.60 E-value=0.041 Score=50.39 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=64.5
Q ss_pred HHHHHhcCCCEEEEec-cCHHH----HHcCCcEEEEcCCCccC--CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 218 KWLQTITKLPILVKGV-LTAED----VQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v-~~~~d----~~aGad~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
...++..+-..++... -+.++ .+.|+|+|.++.-..+. .+..+..++.+.++.+.. .+|+++-||| +.+.
T Consensus 95 ~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi-~~~n 171 (211)
T COG0352 95 AEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGI-NLEN 171 (211)
T ss_pred HHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCC-CHHH
Confidence 4444544433444433 35555 67889999886644433 222334567888887766 6999999999 6899
Q ss_pred HHHHHHhCcCEEEecHHHHHH
Q 017781 291 VFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 291 v~kalalGAd~V~igr~~l~~ 311 (366)
+...++.||++|.+-|.++.+
T Consensus 172 v~~v~~~Ga~gVAvvsai~~a 192 (211)
T COG0352 172 VPEVLEAGADGVAVVSAITSA 192 (211)
T ss_pred HHHHHHhCCCeEEehhHhhcC
Confidence 999999999999999998753
No 238
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.59 E-value=0.018 Score=54.33 Aligned_cols=65 Identities=18% Similarity=0.234 Sum_probs=51.8
Q ss_pred HHcCCcEEEEcCCC--ccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC--cCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG--ASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~g--g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG--Ad~V~igr~~ 308 (366)
.+.|+..|++..-. |+ -.| +.++.+.++++.+ ++|||++|||++-+|+.+...+| ...|.+|+++
T Consensus 173 ~~~g~~eii~TdI~rDGt--l~G-~d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 173 LAAYCDEFLVHGVDVEGK--RLG-IDEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred HHhCCCEEEEEEEcCCCc--ccC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence 77889988875421 21 112 4678888888887 89999999999999999998884 6889999997
No 239
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=96.59 E-value=0.016 Score=51.36 Aligned_cols=88 Identities=19% Similarity=0.223 Sum_probs=59.5
Q ss_pred HHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 215 KDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 215 ~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
+.++.+|+..+ .+-+.=.+.+.++ .++|+|.|-+.|. .+..+..+.+..+....++.|.++||| +.+
T Consensus 68 ~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~-------~~~~~~~~v~~l~~~~~~v~ie~SGGI-~~~ 139 (169)
T PF01729_consen 68 EAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNM-------SPEDLKEAVEELRELNPRVKIEASGGI-TLE 139 (169)
T ss_dssp HHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES--------CHHHHHHHHHHHHHHTTTSEEEEESSS-STT
T ss_pred HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCc-------CHHHHHHHHHHHhhcCCcEEEEEECCC-CHH
Confidence 45888888774 3323335566665 9999999999883 333332222222345567999999999 678
Q ss_pred HHHHHHHhCcCEEEecHHHHH
Q 017781 290 DVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l~ 310 (366)
.+.++...|+|.+.+|.....
T Consensus 140 ni~~ya~~gvD~isvg~~~~~ 160 (169)
T PF01729_consen 140 NIAEYAKTGVDVISVGSLTHS 160 (169)
T ss_dssp THHHHHHTT-SEEEECHHHHS
T ss_pred HHHHHHhcCCCEEEcChhhcC
Confidence 899999999999999986543
No 240
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.58 E-value=0.015 Score=54.07 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=52.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+|.+++-.-.+.. +.....+.+.++.+.. ..|+.+.||||+.+|+.+++.+||+-|.+|+..+.
T Consensus 40 ~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~ 107 (232)
T PRK13586 40 YNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFT 107 (232)
T ss_pred HHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhC
Confidence 56788888865433221 3345668888888743 25999999999999999999999999999997653
No 241
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=96.57 E-value=0.15 Score=47.97 Aligned_cols=191 Identities=16% Similarity=0.219 Sum_probs=92.6
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceecC------------CCCCC---------CH---HHHhccCC-CceE
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS------------SWSTS---------SV---EEVASTGP-GIRF 126 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs------------~~~~~---------~~---e~i~~~~~-~~~~ 126 (366)
.||+-+..| .+ -.|+.+++.|+.+.+- +.+.. .+ +||....+ .|.+
T Consensus 15 ~pIig~gaG-tG--------lsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPVi 85 (268)
T PF09370_consen 15 KPIIGAGAG-TG--------LSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVI 85 (268)
T ss_dssp --EEEEEES-SH--------HHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EE
T ss_pred CceEEEeec-cc--------hhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEE
Confidence 577766643 22 4899999999988861 11110 01 23333333 5777
Q ss_pred EEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhh
Q 017781 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (366)
Q Consensus 127 ~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (366)
+=+........+...++++++.|+.++. |.|..|.-.-..|+. +.
T Consensus 86 aGv~atDP~~~~~~fl~~lk~~Gf~GV~---NfPTvgliDG~fR~~-------------------------------LE- 130 (268)
T PF09370_consen 86 AGVCATDPFRDMDRFLDELKELGFSGVQ---NFPTVGLIDGQFRQN-------------------------------LE- 130 (268)
T ss_dssp EEE-TT-TT--HHHHHHHHHHHT-SEEE---E-S-GGG--HHHHHH-------------------------------HH-
T ss_pred EEecCcCCCCcHHHHHHHHHHhCCceEE---ECCcceeeccHHHHH-------------------------------HH-
Confidence 7776544445678889999999999975 445443221111111 11
Q ss_pred ccCCCCCHH-HHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcC---CCccC-CCCCcc---hHHHHHHHHH--
Q 017781 207 QIDRSLSWK-DVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSN---HGARQ-LDYVPA---TIMALEEVVK-- 271 (366)
Q Consensus 207 ~~d~~~~~~-~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~---~gg~~-~~~~~~---~~~~l~~i~~-- 271 (366)
.....++ +|+-||..- .--+.+--+.+.++ .++|||.|+++- .||.. .....+ ..+.+.++.+
T Consensus 131 --e~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa 208 (268)
T PF09370_consen 131 --ETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAA 208 (268)
T ss_dssp --HTT--HHHHHHHHHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHH
T ss_pred --hcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHH
Confidence 1122332 355555443 12344555678887 999999999863 23321 112222 1223333333
Q ss_pred -HcCCC-ceEEEecCCCCHHHHHHHHHh--CcCEEEecHHH
Q 017781 272 -ATQGR-IPVFLDGGVRRGTDVFKALAL--GASGIFIGRPV 308 (366)
Q Consensus 272 -~~~~~-i~vi~~GGI~~~~dv~kalal--GAd~V~igr~~ 308 (366)
.++.+ +.++--|-|.+++|+...+.. |+++..=|+.+
T Consensus 209 ~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 209 RAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp HCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTT
T ss_pred HHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccch
Confidence 33344 445555669999999999983 57887777654
No 242
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.55 E-value=0.029 Score=50.27 Aligned_cols=85 Identities=20% Similarity=0.216 Sum_probs=54.0
Q ss_pred CHHHHHHHHHhcCCCEE--EEec---------cCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCc
Q 017781 213 SWKDVKWLQTITKLPIL--VKGV---------LTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 277 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~--vK~v---------~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i 277 (366)
..++|+.+|+.+++||| +|.. ++.++ .++|+|.|-++....... .+..+.+.++++.. .
T Consensus 20 ~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~~---~ 93 (192)
T PF04131_consen 20 GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP---ETLEELIREIKEKY---Q 93 (192)
T ss_dssp SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHCT---S
T ss_pred CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHhC---c
Confidence 56789999999999976 3421 34555 999999999987543211 33445666666532 5
Q ss_pred eEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 278 PVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 278 ~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.+++| |.|-+|...|..+|+|.|.--
T Consensus 94 l~MAD--ist~ee~~~A~~~G~D~I~TT 119 (192)
T PF04131_consen 94 LVMAD--ISTLEEAINAAELGFDIIGTT 119 (192)
T ss_dssp EEEEE---SSHHHHHHHHHTT-SEEE-T
T ss_pred EEeee--cCCHHHHHHHHHcCCCEEEcc
Confidence 56655 899999999999999999643
No 243
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=96.52 E-value=0.028 Score=50.01 Aligned_cols=74 Identities=20% Similarity=0.314 Sum_probs=53.5
Q ss_pred eccCHHH----HHcCCcEEEEcCCCccC--CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 232 GVLTAED----VQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 232 ~v~~~~d----~~aGad~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
-+-+.++ .+.|+|++.++.-.-+. .+..+..++.+.++.+.. ++||++-||| +.+++.+...+||++|.+-
T Consensus 101 S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi 177 (180)
T PF02581_consen 101 SCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGADGVAVI 177 (180)
T ss_dssp EESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-SEEEES
T ss_pred ecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEEEE
Confidence 4457766 66899999988643221 122344678888888877 7999999999 7999999999999999988
Q ss_pred HHH
Q 017781 306 RPV 308 (366)
Q Consensus 306 r~~ 308 (366)
+++
T Consensus 178 ~aI 180 (180)
T PF02581_consen 178 SAI 180 (180)
T ss_dssp HHH
T ss_pred eeC
Confidence 753
No 244
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.51 E-value=0.01 Score=55.60 Aligned_cols=67 Identities=30% Similarity=0.222 Sum_probs=51.2
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.+.|+..+.+.---+. .+.+...+.+.++.+.+ .+|+.+.|||||.+|+.+++.+||+-|.+|+..+
T Consensus 41 ~~~g~~~lhivDLd~a--~g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 41 EQGGAEWIHLVDLDAA--FGGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred HhCCCeEEEEEECCCC--CCCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 3456666665421111 13445778899999887 6999999999999999999999999999999754
No 245
>PRK12376 putative translaldolase; Provisional
Probab=96.49 E-value=0.47 Score=44.28 Aligned_cols=96 Identities=19% Similarity=0.175 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH----HH--c--CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcC--CCceEEEec
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED----VQ--A--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDG 283 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d----~~--a--Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~i~vi~~G 283 (366)
.+.++.+++. ++++-+-.+.++.. .+ + |++.|.. .-||-.|.+...+..+.++++.+. .+..|++.+
T Consensus 102 l~Ai~~L~~~-GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS 178 (236)
T PRK12376 102 IPLIKKLSAD-GVKLNVTAIFTIEQVKEVVDALTPGVPAIVSV--FAGRIADTGVDPVPLMKEALAICHSKPGVELLWAS 178 (236)
T ss_pred HHHHHHHHHC-CCeEEEeeecCHHHHHHHHHHhcCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEe
Confidence 4456666664 88999999988876 23 3 5877653 345544556556666666665542 256777766
Q ss_pred CCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 284 GVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 284 GI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
||+..++.+++.+|||.|-+.-.++..+.
T Consensus 179 -iR~~~~v~~a~~~Gad~vTvp~~v~~~l~ 207 (236)
T PRK12376 179 -PREVYNIIQADQLGCDIITVTPDVLKKLP 207 (236)
T ss_pred -cCCHHHHHHHHHcCCCEEEcCHHHHHHHH
Confidence 99999999999999999999988877654
No 246
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.46 E-value=0.011 Score=55.25 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=52.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.+.|+|.+.+----+. ..+.+...+.+.++.+.+ .||.+.||||+-+|+.+.+.+||+-|.+|+..+
T Consensus 40 ~~~ga~~lhivDLd~a-~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 40 IEEGFTLIHVVDLSKA-IENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred HHCCCCEEEEEECCCc-ccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 5678888876432111 123446788899998875 599999999999999999999999999998654
No 247
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.42 E-value=0.035 Score=53.04 Aligned_cols=83 Identities=20% Similarity=0.200 Sum_probs=64.2
Q ss_pred HHHHHHHHhcC--CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 215 KDVKWLQTITK--LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 215 ~~i~~lr~~~~--~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
+.++.+|+..+ .+|.| .+-+.++ .++|+|.|-+.|. +.+.+.++.+.++++.++-++||| +.
T Consensus 182 ~ai~~~r~~~~~~~kIeV-Ev~tleea~ea~~~gaDiI~LDn~----------s~e~l~~av~~~~~~~~leaSGGI-~~ 249 (281)
T PRK06106 182 EAIRRARAGVGHLVKIEV-EVDTLDQLEEALELGVDAVLLDNM----------TPDTLREAVAIVAGRAITEASGRI-TP 249 (281)
T ss_pred HHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHhCCCceEEEECCC-CH
Confidence 45888888764 34333 4567776 9999999999883 346666776666667889999999 67
Q ss_pred HHHHHHHHhCcCEEEecHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l 309 (366)
+.+.++-+.|+|.+.+|.+..
T Consensus 250 ~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 250 ETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred HHHHHHHhcCCCEEEeChhhc
Confidence 888888889999999998654
No 248
>PRK08185 hypothetical protein; Provisional
Probab=96.41 E-value=0.79 Score=43.94 Aligned_cols=100 Identities=20% Similarity=0.310 Sum_probs=68.3
Q ss_pred HHcCCcEEEEcC---CCccCCCCCc--chHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l 312 (366)
.+.|+|.+.++. ||-.. ..+. -.++.|.++++.+ ++|+++=||+..+ +++.|++.+|..-|-+++-+..+.
T Consensus 159 ~~TgvD~LAvaiGt~HG~y~-~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~a~ 235 (283)
T PRK08185 159 SRTGVDTLAVAIGTAHGIYP-KDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKYAF 235 (283)
T ss_pred HhhCCCEEEeccCcccCCcC-CCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHHHH
Confidence 445999999864 33221 1112 2588999999888 7999999999666 456679999999999999765432
Q ss_pred hh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 313 AA-------EG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 313 ~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
.. .. ..-.....+.+.+..+..|+.+|..
T Consensus 236 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~ 277 (283)
T PRK08185 236 FKKVREILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNST 277 (283)
T ss_pred HHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 10 01 1223344566777888888888864
No 249
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=96.37 E-value=0.073 Score=50.12 Aligned_cols=64 Identities=25% Similarity=0.394 Sum_probs=52.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
...++|+|+|++.. .+.+++.+.|.++++.+ .+||++.+|+ |.+.+.+.|.. ||++.+|+.|-.
T Consensus 169 ~~~~aDaviVtG~~----TG~~~~~~~l~~vr~~~--~~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 169 ERGGADAVIVTGKA----TGEPPDPEKLKRVREAV--PVPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFKK 232 (254)
T ss_pred HhcCCCEEEECCcc----cCCCCCHHHHHHHHhcC--CCCEEEecCC-CHHHHHHHHHh-CCEEEEeeeeee
Confidence 46789999999843 13467888999999888 4999999998 68889888865 999999998743
No 250
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.37 E-value=0.036 Score=53.14 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=63.4
Q ss_pred HHHHHHHHhcC--CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 215 KDVKWLQTITK--LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 215 ~~i~~lr~~~~--~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
+.++.+|+..+ .+|.| .+-+.++ .++|+|.|.+.|. +.+.+.++.+.+++++.+.++||| +.
T Consensus 185 ~av~~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImLDnm----------spe~l~~av~~~~~~~~leaSGGI-~~ 252 (290)
T PRK06559 185 KAIAQARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIMLDNM----------SLEQIEQAITLIAGRSRIECSGNI-DM 252 (290)
T ss_pred HHHHHHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCceEEEEECCC-CH
Confidence 45888888764 33333 4567776 9999999999883 345566666666668899999999 68
Q ss_pred HHHHHHHHhCcCEEEecHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l 309 (366)
+.+..+..+|+|.+.+|.+..
T Consensus 253 ~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 253 TTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHHHHHhcCCCEEEeCcccc
Confidence 888888889999999998764
No 251
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.36 E-value=0.014 Score=54.32 Aligned_cols=66 Identities=17% Similarity=0.063 Sum_probs=47.2
Q ss_pred HHcCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|+..|++.+- -|+. .| +.++.+..+.+. ..|+|++|||++-+|+.++..+|+++|.+|+++..
T Consensus 156 ~~~g~~~ii~tdI~~dGt~--~G-~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~ 223 (232)
T PRK13586 156 NELELLGIIFTYISNEGTT--KG-IDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL 223 (232)
T ss_pred HhcCCCEEEEecccccccC--cC-cCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence 3456666665431 1221 23 466677776653 34599999999999999999999999999999764
No 252
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.35 E-value=0.07 Score=48.77 Aligned_cols=84 Identities=25% Similarity=0.353 Sum_probs=55.0
Q ss_pred CHHHHHHHHHhcCCCEEEEec-cCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTITKLPILVKGV-LTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
..+.++.+|+..++||++|+. .+.+. .++|+|+|++.... ..+..+..+.+....+ .+.++++ +.+
T Consensus 60 ~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~-----~~~~~~~~~~~~~~~~--g~~~~v~--v~~ 130 (217)
T cd00331 60 SLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAA-----LDDEQLKELYELAREL--GMEVLVE--VHD 130 (217)
T ss_pred CHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeecc-----CCHHHHHHHHHHHHHc--CCeEEEE--ECC
Confidence 456788888888999999974 34333 89999999985531 1112222222222223 3333322 468
Q ss_pred HHHHHHHHHhCcCEEEec
Q 017781 288 GTDVFKALALGASGIFIG 305 (366)
Q Consensus 288 ~~dv~kalalGAd~V~ig 305 (366)
.+++.++..+|++.++++
T Consensus 131 ~~e~~~~~~~g~~~i~~t 148 (217)
T cd00331 131 EEELERALALGAKIIGIN 148 (217)
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 999999999999999887
No 253
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.28 E-value=0.028 Score=51.20 Aligned_cols=77 Identities=26% Similarity=0.305 Sum_probs=55.4
Q ss_pred CHHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
..+.|+++++.++ +.|....+++.++ .++|+++|+ |-+. ..+.+..+. .. .+|++- |+.|
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv-sP~~---------~~~v~~~~~-~~--~i~~iP--G~~T 110 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV-SPGL---------TPELAKHAQ-DH--GIPIIP--GVAT 110 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE-CCCC---------CHHHHHHHH-Hc--CCcEEC--CCCC
Confidence 3466999998774 5566667888887 999999995 3321 223343333 22 566666 8999
Q ss_pred HHHHHHHHHhCcCEEEe
Q 017781 288 GTDVFKALALGASGIFI 304 (366)
Q Consensus 288 ~~dv~kalalGAd~V~i 304 (366)
+.++.+|+.+|||.|=+
T Consensus 111 ptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 111 PSEIMLALELGITALKL 127 (204)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999743
No 254
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.28 E-value=0.67 Score=44.26 Aligned_cols=100 Identities=25% Similarity=0.353 Sum_probs=68.5
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH-HHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~-dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
.+.|+|.+-++. ||.+......-.++.|.++.+.+ ++|+..=||=..+. ++.|++..|..-|-+++-+..+...
T Consensus 158 ~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~ 235 (276)
T cd00947 158 EETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRLAFTA 235 (276)
T ss_pred HHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHH
Confidence 567899999874 44322101123678999999998 79999999877774 5888999999999999987554211
Q ss_pred -------cC------HHHHHHHHHHHHHHHHHHHHHcCC
Q 017781 315 -------EG------EKGVRRVLEMLREEFELAMALSGC 340 (366)
Q Consensus 315 -------~G------~~gv~~~~~~l~~el~~~m~~~G~ 340 (366)
.. ..-.....+.+.+.++..|..+|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s 274 (276)
T cd00947 236 ALREYLAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGS 274 (276)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 00 012334445667777777777765
No 255
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=96.27 E-value=0.27 Score=48.15 Aligned_cols=230 Identities=16% Similarity=0.133 Sum_probs=119.0
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhcc-CCC-ce-----E-----EEeee--cCCHHHH
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST-GPG-IR-----F-----FQLYV--YKDRNVV 138 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~-~~~-~~-----~-----~Qly~--~~d~~~~ 138 (366)
|++||=+|...-..-+--..+.++|++.|+-.+= =+ ....+++... .+. .+ | +.+|. .-+.+..
T Consensus 1 ~~iIAEig~NH~Gdl~~A~~lI~~A~~aGadaVK-fQ-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~ 78 (329)
T TIGR03569 1 TFIIAEAGVNHNGSLELAKKLVDAAAEAGADAVK-FQ-TFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDH 78 (329)
T ss_pred CEEEEEeCCCccCcHHHHHHHHHHHHHhCCCEEE-ee-eCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHH
Confidence 6788888653211111224788899999976541 12 2334444221 111 11 1 11110 1245667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC-CCHHHH
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS-LSWKDV 217 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~i 217 (366)
..+.+.+++.|...+.--.| .+.-|+...+.+|. +. + ...+ ..+..+
T Consensus 79 ~~L~~~~~~~Gi~~~stpfd-----~~svd~l~~~~v~~-~K-----------I---------------aS~~~~n~pLL 126 (329)
T TIGR03569 79 RELKEYCESKGIEFLSTPFD-----LESADFLEDLGVPR-FK-----------I---------------PSGEITNAPLL 126 (329)
T ss_pred HHHHHHHHHhCCcEEEEeCC-----HHHHHHHHhcCCCE-EE-----------E---------------CcccccCHHHH
Confidence 77788888888777642222 12223333332221 00 0 0112 246677
Q ss_pred HHHHHhcCCCEEEEec-cCHHH--------HHcCCc---EEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCC
Q 017781 218 KWLQTITKLPILVKGV-LTAED--------VQAGAA---GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 285 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v-~~~~d--------~~aGad---~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI 285 (366)
+.+.+ +++||+++.. .+.++ .+.|.+ .+.++....+........+..++.+++.. .+||..++=-
T Consensus 127 ~~~A~-~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f--~~pVG~SdHt 203 (329)
T TIGR03569 127 KKIAR-FGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF--DLPVGYSDHT 203 (329)
T ss_pred HHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh--CCCEEECCCC
Confidence 77776 5899999955 56665 667764 44443322111111123456677777666 5899887533
Q ss_pred CCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHH----HHHHHHHHHHHHHHHHHcCCC
Q 017781 286 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv----~~~~~~l~~el~~~m~~~G~~ 341 (366)
..-.-...|+++||+ +|=+-|--.-+..|++.- -.-+..|.++++..-..+|..
T Consensus 204 ~G~~~~~aAvalGA~--iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~~ 261 (329)
T TIGR03569 204 LGIEAPIAAVALGAT--VIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGDG 261 (329)
T ss_pred ccHHHHHHHHHcCCC--EEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 323344567889999 556655433333343221 123456666677777777753
No 256
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=96.24 E-value=0.037 Score=53.18 Aligned_cols=83 Identities=24% Similarity=0.261 Sum_probs=62.9
Q ss_pred HHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 215 KDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 215 ~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
+.++.+|+... .| +.-.+-+.++ .++|+|.|-+.|. +.+.+.++.+.+++++.+.++||| +.+
T Consensus 197 ~av~~~r~~~~~~k-IeVEv~sleea~ea~~~gaDiI~LDn~----------s~e~~~~av~~~~~~~~ieaSGGI-~~~ 264 (296)
T PRK09016 197 QAVEKAFWLHPDVP-VEVEVENLDELDQALKAGADIIMLDNF----------TTEQMREAVKRTNGRALLEVSGNV-TLE 264 (296)
T ss_pred HHHHHHHHhCCCCC-EEEEeCCHHHHHHHHHcCCCEEEeCCC----------ChHHHHHHHHhhcCCeEEEEECCC-CHH
Confidence 45778887653 45 3335567776 9999999998883 235666666666668899999999 678
Q ss_pred HHHHHHHhCcCEEEecHHHH
Q 017781 290 DVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l 309 (366)
.+.++-.+|+|.+.+|.+.-
T Consensus 265 ni~~yA~tGVD~Is~galth 284 (296)
T PRK09016 265 TLREFAETGVDFISVGALTK 284 (296)
T ss_pred HHHHHHhcCCCEEEeCcccc
Confidence 88888889999999998653
No 257
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.23 E-value=0.75 Score=44.15 Aligned_cols=100 Identities=17% Similarity=0.274 Sum_probs=67.6
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC-HHHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~-~~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
.+.|+|.+-++. ||-+. ....-.++.|.+|++.+ ++|+..=||=.. .+++.||+.+|..-|-+++-+..+...
T Consensus 165 ~~TgvD~LAvaiGt~HG~Y~-~~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l~~a~~~ 241 (286)
T PRK12738 165 ELTGVDSLAVAIGTAHGLYS-KTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAG 241 (286)
T ss_pred HHhCCCEEEeccCcccCCCC-CCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHH
Confidence 567899999874 45332 11223678999999988 799888775444 466778999999999999977554211
Q ss_pred -------cCH------HHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 315 -------EGE------KGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 315 -------~G~------~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
..+ .-.....+.+++-.+..|+.+|..
T Consensus 242 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (286)
T PRK12738 242 AVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 011 123344556777777888888754
No 258
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.20 E-value=0.039 Score=53.93 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=48.2
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|+++.+.|.. ....+.+.++++..+ +++|++ |.+.+.+++.+++.+|||+|.+|
T Consensus 103 ~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 103 VEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 88999999987644321 234567777777653 588888 99999999999999999999874
No 259
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.20 E-value=0.018 Score=52.67 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=33.7
Q ss_pred EEEecCCCCHH-HHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHH
Q 017781 279 VFLDGGVRRGT-DVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 332 (366)
Q Consensus 279 vi~~GGI~~~~-dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~ 332 (366)
.+++|||+... ++.+++..|||.+.+||+++.+ ++ ..+.++.++++++
T Consensus 165 ~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~-----~d-~~~~~~~l~~~~~ 213 (215)
T PRK13813 165 KIISPGIGAQGGKAADAIKAGADYVIVGRSIYNA-----AD-PREAAKAINEEIR 213 (215)
T ss_pred EEEeCCcCCCCCCHHHHHHcCCCEEEECcccCCC-----CC-HHHHHHHHHHHHh
Confidence 34999999863 6778888999999999986432 11 3445566665554
No 260
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.16 E-value=0.76 Score=44.08 Aligned_cols=100 Identities=17% Similarity=0.293 Sum_probs=66.9
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC-HHHHHHHHHhCcCEEEecHHHHHHhh-
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVYSLA- 313 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~-~~dv~kalalGAd~V~igr~~l~~l~- 313 (366)
.+.|+|.+-|+. ||-+. ....-.++.|.+|++.+ ++|+..=||=.. -+++.||+.+|..-|-+++-+..+..
T Consensus 165 ~~TgvD~LAvaiGt~HG~y~-~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~ 241 (284)
T PRK09195 165 EATGIDSLAVAIGTAHGMYK-GEPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKVNVATELKIAFSQ 241 (284)
T ss_pred HHHCcCEEeeccCccccccC-CCCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHH
Confidence 567999999875 55322 11123678899999988 789888775444 46677899999999999997754321
Q ss_pred ------hcC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 314 ------AEG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 314 ------~~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
... ..-.....+.+++-.+..|+.+|..
T Consensus 242 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK09195 242 ALKNYLTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCE 281 (284)
T ss_pred HHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 001 0113344556777777788887753
No 261
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.12 E-value=0.17 Score=46.40 Aligned_cols=87 Identities=16% Similarity=0.101 Sum_probs=55.5
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
+-+.+++.++ .++|+ +=|+.|+.+ .++|+|.|.+.-.+ .. +|+ ..++.++.-++ +++++..|||. .
T Consensus 97 ~~~vi~~a~~-~~i~~-iPG~~TptEi~~a~~~Ga~~vKlFPa~--~~-gg~---~~lk~l~~p~p-~~~~~ptGGV~-~ 166 (212)
T PRK05718 97 TPPLLKAAQE-GPIPL-IPGVSTPSELMLGMELGLRTFKFFPAE--AS-GGV---KMLKALAGPFP-DVRFCPTGGIS-P 166 (212)
T ss_pred CHHHHHHHHH-cCCCE-eCCCCCHHHHHHHHHCCCCEEEEccch--hc-cCH---HHHHHHhccCC-CCeEEEeCCCC-H
Confidence 3345555554 46653 346778776 89999999984321 11 133 33444444443 69999999995 5
Q ss_pred HHHHHHHHhCcCEEEecHHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l~ 310 (366)
+++...+.+|+..++.| .+|+
T Consensus 167 ~ni~~~l~ag~v~~vgg-s~L~ 187 (212)
T PRK05718 167 ANYRDYLALPNVLCIGG-SWMV 187 (212)
T ss_pred HHHHHHHhCCCEEEEEC-hHhC
Confidence 89999999996555554 4443
No 262
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=96.11 E-value=0.097 Score=47.63 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHc---CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 261 ATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 261 ~~~~~l~~i~~~~---~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
..++-+.++++.. +.++.|.+||||+.. .+.+..++|||.+.+|+.+.
T Consensus 148 ~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~-~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 148 EVLEKIRELRKLIPENGLDFEIEVDGGINEE-NIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCGSEEEEESSESTT-THHHHHHHT--EEEESHHHH
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEECCCCHH-HHHHHHHcCCCEEEECHHHh
Confidence 3555555555443 336899999999754 67778889999999998753
No 263
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.09 E-value=0.056 Score=51.61 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=63.0
Q ss_pred HHHHHHHHhcC--CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 215 KDVKWLQTITK--LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 215 ~~i~~lr~~~~--~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
+.++.+|+..+ .+ |.=.+-+.++ .++|+|.|.+.|. +.+.+.++.+.++++..+.++||| +.
T Consensus 181 ~av~~~r~~~~~~~k-IeVEv~slee~~ea~~~gaDiImLDn~----------s~e~l~~av~~~~~~~~leaSGgI-~~ 248 (281)
T PRK06543 181 EALRHVRAQLGHTTH-VEVEVDRLDQIEPVLAAGVDTIMLDNF----------SLDDLREGVELVDGRAIVEASGNV-NL 248 (281)
T ss_pred HHHHHHHHhCCCCCc-EEEEeCCHHHHHHHHhcCCCEEEECCC----------CHHHHHHHHHHhCCCeEEEEECCC-CH
Confidence 45888888764 33 3334567776 8899999999883 345556666666667789999999 68
Q ss_pred HHHHHHHHhCcCEEEecHHHH
Q 017781 289 TDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 289 ~dv~kalalGAd~V~igr~~l 309 (366)
+.+.++...|+|.+.+|.+..
T Consensus 249 ~ni~~yA~tGVD~Is~galth 269 (281)
T PRK06543 249 NTVGAIASTGVDVISVGALTH 269 (281)
T ss_pred HHHHHHHhcCCCEEEeCcccc
Confidence 889888889999999998653
No 264
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.09 E-value=0.061 Score=51.61 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=60.3
Q ss_pred HHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHH---cCCCceEEEecCCC
Q 017781 215 KDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGVR 286 (366)
Q Consensus 215 ~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~---~~~~i~vi~~GGI~ 286 (366)
+.++++|+..+ .| +.=.+-+.++ .++|+|.|-+.|. . .+.+.++.+. ...++.+.++|||
T Consensus 188 ~ai~~~r~~~~~~k-IeVEv~tl~ea~eal~~gaDiI~LDnm-------~---~e~vk~av~~~~~~~~~v~ieaSGGI- 255 (289)
T PRK07896 188 AALRAVRAAAPDLP-CEVEVDSLEQLDEVLAEGAELVLLDNF-------P---VWQTQEAVQRRDARAPTVLLESSGGL- 255 (289)
T ss_pred HHHHHHHHhCCCCC-EEEEcCCHHHHHHHHHcCCCEEEeCCC-------C---HHHHHHHHHHHhccCCCEEEEEECCC-
Confidence 45888888653 45 3334567766 8999999999873 2 2333333332 3457899999999
Q ss_pred CHHHHHHHHHhCcCEEEecHHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~l 309 (366)
+.+.+.++-.+|+|.+.+|.+..
T Consensus 256 ~~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 256 TLDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred CHHHHHHHHhcCCCEEEeChhhc
Confidence 68888888889999999998764
No 265
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=96.06 E-value=0.046 Score=62.23 Aligned_cols=114 Identities=12% Similarity=0.148 Sum_probs=84.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc-----CCCceEEE-ecCCCCHHHHHHHHHhCcCEEEecHHHH--H
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGRPVV--Y 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~i~vi~-~GGI~~~~dv~kalalGAd~V~igr~~l--~ 310 (366)
.+.|+..|++|-++-..-....|.+-++..+...+ +.++.||+ +|.+|+.-|++..+.+|||+|.-.-++- .
T Consensus 607 v~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYLA~eti~ 686 (1485)
T PRK11750 607 VRDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYLAYETLG 686 (1485)
T ss_pred HHCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHHHHHHHH
Confidence 78899999999875322223445555555555443 44788888 8999999999999999999995544331 1
Q ss_pred HhhhcC------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017781 311 SLAAEG------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 352 (366)
Q Consensus 311 ~l~~~G------~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~ 352 (366)
.+...| .+.+.+++..+.++|...|..+|.++++.-++..+.
T Consensus 687 ~l~~~g~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqiF 734 (1485)
T PRK11750 687 DLVDTGEILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLF 734 (1485)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCcccc
Confidence 121223 367889999999999999999999999988776553
No 266
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=95.98 E-value=0.028 Score=53.08 Aligned_cols=64 Identities=25% Similarity=0.219 Sum_probs=50.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.+.|++.+.|--=+| +.+...+++.++++ + .+||-+-||||+ +++.++|.+||+-|.||+..+.
T Consensus 53 ~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 53 KRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred HHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 678888887543222 23445788888888 6 599999999997 9999999999999999987654
No 267
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.94 E-value=0.73 Score=43.78 Aligned_cols=93 Identities=23% Similarity=0.330 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCCEEEEec-c-CHHH--------HHcCCcEEEEcCCCccCCCCC-cc--hHHHHHHHHHHcCCCceEE
Q 017781 214 WKDVKWLQTITKLPILVKGV-L-TAED--------VQAGAAGIIVSNHGARQLDYV-PA--TIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v-~-~~~d--------~~aGad~I~vs~~gg~~~~~~-~~--~~~~l~~i~~~~~~~i~vi 280 (366)
.+.++.+ ..+++||++|.. . +.++ ...|-.-+++--.|++....- +. .+..++.+++.. .+||+
T Consensus 124 ~~LL~~~-a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV~ 200 (266)
T PRK13398 124 FELLKEV-GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS--HLPII 200 (266)
T ss_pred HHHHHHH-hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc--CCCEE
Confidence 4456666 456899999965 3 6665 556776565544455333211 11 344566555544 68999
Q ss_pred EecCCCC------HHHHHHHHHhCcCEEEecHHHH
Q 017781 281 LDGGVRR------GTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 281 ~~GGI~~------~~dv~kalalGAd~V~igr~~l 309 (366)
+|..=.. ......|+++|||+++|-+-+-
T Consensus 201 ~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 201 VDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred EeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 9643222 5677788999999999997653
No 268
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=95.93 E-value=1.4 Score=41.01 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH-------HHcC-CcEEEEcCCCccCCCCCcchHHHHHHHHHHcC--CCceEEEec
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED-------VQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDG 283 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d-------~~aG-ad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~i~vi~~G 283 (366)
.+.++.+++. ++++-+-.+.+... ..+| +++|.. .-||--|.|......+.++.+.+. .+..|++.+
T Consensus 102 l~ai~~L~~~-GI~vn~T~vfs~~Qa~~aa~A~~aG~a~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS 178 (236)
T TIGR02134 102 GPLIQKLSAD-GITLNVTALTTIEQVEKVCQSFTDGVPGIVSV--FAGRIADTGVDPEPHMREALEIVAQKPGVELLWAS 178 (236)
T ss_pred HHHHHHHHHC-CCcEEeehcCCHHHHHHHHHHHhCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEc
Confidence 5667777775 88999988988876 2479 577754 335544556556666666655442 367788877
Q ss_pred CCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 284 GVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 284 GI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
+|+..++.++..+|||.|-+.-.++..+.
T Consensus 179 -~R~~~~v~~a~~~Gad~vTvp~~v~~~l~ 207 (236)
T TIGR02134 179 -PRELFNIIQADRIGCDIITCAHDILAKLP 207 (236)
T ss_pred -cCCHHHHHHHHHcCCCEEECCHHHHHHHH
Confidence 99999999999999999999988877764
No 269
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=95.93 E-value=1.6 Score=41.94 Aligned_cols=99 Identities=24% Similarity=0.320 Sum_probs=70.9
Q ss_pred HHcCCcEEEEcC---CCccCCCCCc--chHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l 312 (366)
.+.|+|.+-++. ||.+. ..| -.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|-+++-+..+.
T Consensus 168 ~~TgvD~LAvaiGt~HG~y~--~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~ 243 (288)
T TIGR00167 168 KLTGVDSLAAAIGNVHGVYK--GEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQIAF 243 (288)
T ss_pred hccCCcEEeeccCccccccC--CCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHHHHH
Confidence 567899999874 44322 223 3778999999988 8999999988777 578889999999999999775432
Q ss_pred hh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 313 AA-------EG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 313 ~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
.. .. ..-.....+.+.+..+..|+.+|+.
T Consensus 244 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 285 (288)
T TIGR00167 244 AAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSA 285 (288)
T ss_pred HHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 10 00 1223445567777788888888764
No 270
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=95.92 E-value=1 Score=43.19 Aligned_cols=100 Identities=16% Similarity=0.270 Sum_probs=68.3
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
.+.|+|.+-++. ||-+. ....-.++.|.+|++.+ ++|+..=||=..+ +++.|++.+|..-|-+++-+..+...
T Consensus 163 ~~TgvD~LAvaiGt~HG~yk-~~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~ 239 (282)
T TIGR01858 163 EATGVDSLAVAIGTAHGLYK-KTPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKVNVATELKIAFSG 239 (282)
T ss_pred HHHCcCEEecccCccccCcC-CCCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHH
Confidence 678999998874 44322 11123678999999988 7999888865554 56678999999999999977544211
Q ss_pred -------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 315 -------EG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 315 -------~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
.. ..-.....+.+++-++..|+.+|..
T Consensus 240 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 279 (282)
T TIGR01858 240 AVKAYFAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSA 279 (282)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 00 1223444566777778888888754
No 271
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.91 E-value=0.075 Score=51.01 Aligned_cols=82 Identities=24% Similarity=0.335 Sum_probs=60.5
Q ss_pred HHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHH
Q 017781 216 DVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 290 (366)
Q Consensus 216 ~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~d 290 (366)
.++.+|+... .+|.| .+-+.++ .++|+|.|-+.|. +.+.+.++.+.+++++.+-++||| +.+.
T Consensus 195 av~~~r~~~~~~kIeV-Evetleea~eA~~aGaDiImLDnm----------spe~l~~av~~~~~~~~lEaSGGI-t~~n 262 (294)
T PRK06978 195 ALDAAFALNAGVPVQI-EVETLAQLETALAHGAQSVLLDNF----------TLDMMREAVRVTAGRAVLEVSGGV-NFDT 262 (294)
T ss_pred HHHHHHHhCCCCcEEE-EcCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCCeEEEEECCC-CHHH
Confidence 4777776542 33332 4457766 9999999999883 345556666666667899999999 6888
Q ss_pred HHHHHHhCcCEEEecHHHH
Q 017781 291 VFKALALGASGIFIGRPVV 309 (366)
Q Consensus 291 v~kalalGAd~V~igr~~l 309 (366)
+.++-.+|.|.+.+|.+..
T Consensus 263 i~~yA~tGVD~IS~galth 281 (294)
T PRK06978 263 VRAFAETGVDRISIGALTK 281 (294)
T ss_pred HHHHHhcCCCEEEeCcccc
Confidence 8888889999999998654
No 272
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=95.89 E-value=0.059 Score=49.57 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=36.7
Q ss_pred HHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHH
Q 017781 266 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 333 (366)
Q Consensus 266 l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~ 333 (366)
+..+++..+.+..+.++|||+-... -+....|||.+.+|||+..+ +-....++.++++++.
T Consensus 153 ~~~ir~~~~~~~~i~V~gGI~~~~~-~~~~~~~ad~~VvGr~I~~a------~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 153 LNKVKKLSDMGFKVSVTGGLVVEDL-KLFKGIPVKTFIAGRAIRGA------ADPAAAARAFKDEIAK 213 (216)
T ss_pred HHHHHHHhcCCCeEEEcCCCCHhhH-HHHhcCCCCEEEECCcccCC------CCHHHHHHHHHHHHHh
Confidence 3444444433456999999984322 12334599999999995432 1134456666666643
No 273
>TIGR03586 PseI pseudaminic acid synthase.
Probab=95.86 E-value=1.1 Score=43.76 Aligned_cols=230 Identities=18% Similarity=0.205 Sum_probs=113.2
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCC-Cc------eEE-----Eee--ecCCHHHH
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GI------RFF-----QLY--VYKDRNVV 138 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~------~~~-----Qly--~~~d~~~~ 138 (366)
|++||=+|...-..-+--..++++|++.|.-.+= -+ ....+++..... .+ .|- .+| ..-..+..
T Consensus 2 ~~iIAEiG~NH~G~~~~A~~lI~~A~~aGAdavK-FQ-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~ 79 (327)
T TIGR03586 2 PFIIAELSANHNGSLERALAMIEAAKAAGADAIK-LQ-TYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWH 79 (327)
T ss_pred CEEEEEECCCCCChHHHHHHHHHHHHHhCCCEEE-ee-eccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHH
Confidence 6888887653211112224888999999987441 11 233444421111 11 110 000 01234556
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC-CCHHHH
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS-LSWKDV 217 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~i 217 (366)
.++.+.+++.|...+.- | ...+.-|+...+.+|. +. + ...+ ..+..+
T Consensus 80 ~~L~~~~~~~Gi~~~st----p-fd~~svd~l~~~~v~~-~K-----------I---------------~S~~~~n~~LL 127 (327)
T TIGR03586 80 KELFERAKELGLTIFSS----P-FDETAVDFLESLDVPA-YK-----------I---------------ASFEITDLPLI 127 (327)
T ss_pred HHHHHHHHHhCCcEEEc----c-CCHHHHHHHHHcCCCE-EE-----------E---------------CCccccCHHHH
Confidence 67777788888777642 2 1122223333332221 00 0 0112 246677
Q ss_pred HHHHHhcCCCEEEEec-cCHHH--------HHcCC-cEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 218 KWLQTITKLPILVKGV-LTAED--------VQAGA-AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v-~~~~d--------~~aGa-d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
+.+.+ +++||++|.. .+.++ .+.|. +.+.++....+.-......+..++.+++.. .+||-.+.=-..
T Consensus 128 ~~va~-~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f--~~pVG~SDHt~G 204 (327)
T TIGR03586 128 RYVAK-TGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERF--NVPVGLSDHTLG 204 (327)
T ss_pred HHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHh--CCCEEeeCCCCc
Confidence 77766 5899999955 56665 66787 444443221111111122456677666665 689855541111
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHH----HHHHHHHHHHHHHHHHHcCCC
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv----~~~~~~l~~el~~~m~~~G~~ 341 (366)
-.-...|+++||+ +|=+-|--.-+..|++.- -.-+..|.+.++..-..+|..
T Consensus 205 ~~~~~aAva~GA~--iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~~lg~~ 260 (327)
T TIGR03586 205 ILAPVAAVALGAC--VIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWLALGEV 260 (327)
T ss_pred hHHHHHHHHcCCC--EEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 2333467789998 556655333222232210 112445666666666666653
No 274
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=95.84 E-value=0.14 Score=46.62 Aligned_cols=123 Identities=20% Similarity=0.304 Sum_probs=70.9
Q ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
|...+-+.+.+.++.++++|++++++.+-.+ |
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~------------------------------------------------d 97 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTE------------------------------------------------D 97 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BET------------------------------------------------T
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECC------------------------------------------------C
Confidence 5455567788888899999999998754211 2
Q ss_pred CCCCHHHHHHHHHhc-CCCEEEEec----cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 210 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~-~~pv~vK~v----~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
...+.+.++.+.+.. +.|+.+=-. .++.+ .+.|++.|--|+.-. .....++.|.++.+..++++.|
T Consensus 98 g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~----~a~~g~~~L~~lv~~a~~~i~I 173 (201)
T PF03932_consen 98 GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAP----TALEGIENLKELVEQAKGRIEI 173 (201)
T ss_dssp SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSS----STTTCHHHHHHHHHHHTTSSEE
T ss_pred CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCC----CHHHHHHHHHHHHHHcCCCcEE
Confidence 234455555555544 455555422 22222 788999987665322 1223456677776666678999
Q ss_pred EEecCCCCHHHHHHHHH-hCcCEEEec
Q 017781 280 FLDGGVRRGTDVFKALA-LGASGIFIG 305 (366)
Q Consensus 280 i~~GGI~~~~dv~kala-lGAd~V~ig 305 (366)
++-|||+. +.+.+.++ .|+..+-.+
T Consensus 174 m~GgGv~~-~nv~~l~~~tg~~~~H~s 199 (201)
T PF03932_consen 174 MPGGGVRA-ENVPELVEETGVREIHGS 199 (201)
T ss_dssp EEESS--T-TTHHHHHHHHT-SEEEET
T ss_pred EecCCCCH-HHHHHHHHhhCCeEEeec
Confidence 99999964 55666666 888877543
No 275
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=95.81 E-value=0.17 Score=50.60 Aligned_cols=213 Identities=18% Similarity=0.135 Sum_probs=105.7
Q ss_pred eeEcCcccCCceEecccccccccCChh-----hHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCC--H
Q 017781 63 TTVLGFKISMPIMIAPTAMQKMAHPEG-----EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKD--R 135 (366)
Q Consensus 63 t~l~g~~l~~Pi~iApm~~~~l~~~~~-----e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d--~ 135 (366)
.+|.+.++++-|+.|||+-.....+++ ..+.-+.-++-|+++++.+....+........+ ...|+-...+ -
T Consensus 5 ~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~--~~~~~~~~~~~~i 82 (382)
T cd02931 5 IKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMP--SLPCPTYNPTAFI 82 (382)
T ss_pred eeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCC--CccccccCCHHHh
Confidence 467789999999999996322222332 345555556668888875543222110000001 1112211112 2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHH
Q 017781 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (366)
Q Consensus 136 ~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (366)
+..+++.+.+.+.|++.+ +-+... .|+... ... ... ...+... .+.. ..........++.+
T Consensus 83 ~~~k~l~davh~~G~~i~-~QL~H~-~Gr~~~---~~~-~~~---~~~~~ps---~~~~-------~~~~~~~p~~mt~~ 143 (382)
T cd02931 83 RTAKEMTERVHAYGTKIF-LQLTAG-FGRVCI---PGF-LGE---DKPVAPS---PIPN-------RWLPEITCRELTTE 143 (382)
T ss_pred HHHHHHHHHHHHcCCEEE-EEccCc-CCCccC---ccc-cCC---CCccCCC---CCCC-------CcCCCCCCCcCCHH
Confidence 456778888888998765 344321 121110 000 000 0000000 0000 00000011346788
Q ss_pred HHHHHHHhcCCCEEEEeccCHHH-HHcCCcEEEEcC-C-Ccc--C----------CC-CC------cchHHHHHHHHHHc
Q 017781 216 DVKWLQTITKLPILVKGVLTAED-VQAGAAGIIVSN-H-GAR--Q----------LD-YV------PATIMALEEVVKAT 273 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~~~~d-~~aGad~I~vs~-~-gg~--~----------~~-~~------~~~~~~l~~i~~~~ 273 (366)
+|+++.+.+-. ...- .++|.|+|.++. | |.- | -. +| .-..+.+..|++++
T Consensus 144 eI~~ii~~f~~--------AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~ 215 (382)
T cd02931 144 EVETFVGKFGE--------SAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARC 215 (382)
T ss_pred HHHHHHHHHHH--------HHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhc
Confidence 88888876520 1112 789999999986 5 431 1 11 22 11346777777777
Q ss_pred CCCceEEE----------------------ecCCCCHH---HHHHHHH-hCcCEEEec
Q 017781 274 QGRIPVFL----------------------DGGVRRGT---DVFKALA-LGASGIFIG 305 (366)
Q Consensus 274 ~~~i~vi~----------------------~GGI~~~~---dv~kala-lGAd~V~ig 305 (366)
+.+++|.+ .||. +.+ ++++.|. .|+|.+-+.
T Consensus 216 g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~-~~e~~~~~~~~l~~~gvD~l~vs 272 (382)
T cd02931 216 GEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGR-DLEEGLKAAKILEEAGYDALDVD 272 (382)
T ss_pred CCCceEEEEEechhhccccccccccccccccCCC-CHHHHHHHHHHHHHhCCCEEEeC
Confidence 65555543 2233 334 4667775 799999885
No 276
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=95.72 E-value=0.046 Score=51.55 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=50.5
Q ss_pred HcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 240 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 240 ~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
..++|+|+|++.+- +.++.++.|.++++..+ ++|+++.||+ +++.+.+++.. ||+|-+|+.|=
T Consensus 169 ~~~aDavivtG~~T----G~~~d~~~l~~vr~~~~-~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 169 RGLADAVILSGKTT----GTEVDLELLKLAKETVK-DTPVLAGSGV-NLENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred hcCCCEEEECcCCC----CCCCCHHHHHHHHhccC-CCeEEEECCC-CHHHHHHHHhh-CCEEEECCCcc
Confidence 34499999998541 23568888988887553 6899999999 68999999987 99999998863
No 277
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=95.69 E-value=0.094 Score=50.06 Aligned_cols=82 Identities=13% Similarity=0.136 Sum_probs=59.5
Q ss_pred HHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCC
Q 017781 215 KDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVR 286 (366)
Q Consensus 215 ~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~ 286 (366)
+.++.+|+..+ .+ +.=.+.+.++ .++|+|.|.++|. +.+.+.++.+.+ ..++.|.++|||
T Consensus 177 ~av~~~r~~~~~~k-IeVEv~tleea~ea~~~GaDiI~lDn~----------~~e~l~~~v~~l~~~~~~~~leasGGI- 244 (277)
T TIGR01334 177 GAIGRLKQTAPERK-ITVEADTIEQALTVLQASPDILQLDKF----------TPQQLHHLHERLKFFDHIPTLAAAGGI- 244 (277)
T ss_pred HHHHHHHHhCCCCC-EEEECCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHhccCCCEEEEEECCC-
Confidence 45888888753 34 3334567776 9999999998873 223333333333 347889999999
Q ss_pred CHHHHHHHHHhCcCEEEecHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~ 308 (366)
+.+.+.++..+|+|.+.+|.++
T Consensus 245 ~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 245 NPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred CHHHHHHHHhcCCCEEEeCcce
Confidence 6889999999999999999874
No 278
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.69 E-value=1.6 Score=41.95 Aligned_cols=98 Identities=20% Similarity=0.280 Sum_probs=66.7
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcc--hHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l 312 (366)
.+.|+|.+-|+. ||-+ .+.| .++.|.+|++.+ ++|+..=||=..+ +++.||+.+|..-|-+++-+..+.
T Consensus 165 ~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~~a~ 239 (284)
T PRK12737 165 ERTGIDSLAVAIGTAHGLY---KGEPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKVNVATELKIAF 239 (284)
T ss_pred HHhCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHHHH
Confidence 567999999875 5532 2333 678899999988 7999888865554 556679999999999999765432
Q ss_pred h-------hcC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 313 A-------AEG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 313 ~-------~~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
. ... ..-.....+.+++..+..|+.+|..
T Consensus 240 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12737 240 SDAVKKYFYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSE 281 (284)
T ss_pred HHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1 000 1113334456777777788887754
No 279
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=95.67 E-value=0.043 Score=57.18 Aligned_cols=70 Identities=21% Similarity=0.214 Sum_probs=54.7
Q ss_pred HHcCCcEEEEcCCCcc-C-CCCCcchHHHHHHHHHHcCCCceEEEecCCCCH-----------HHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGAR-Q-LDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~-~-~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~-----------~dv~kalalGAd~V~ig 305 (366)
.+.|||.|++-.-.+. . .....+.++.+.++++.+ .+|+.+-||||+- +++.+.|.+|||-|.||
T Consensus 277 ~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~ 354 (538)
T PLN02617 277 YKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIG 354 (538)
T ss_pred HHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEC
Confidence 8899999987653331 1 112234578899998887 7999999999998 55899999999999999
Q ss_pred HHHHH
Q 017781 306 RPVVY 310 (366)
Q Consensus 306 r~~l~ 310 (366)
+..+.
T Consensus 355 s~Av~ 359 (538)
T PLN02617 355 SDAVY 359 (538)
T ss_pred hHHHh
Confidence 97655
No 280
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=95.62 E-value=0.064 Score=52.81 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=46.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|+++...|+ ..-..+.+.++++..+ ++|||+ |.|-|++-+...+..|||+|-+|
T Consensus 117 ~~agvD~ivID~a~g~----s~~~~~~ik~ik~~~~-~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 117 VEAGVDVIVIDSAHGH----SEHVIDMIKKIKKKFP-DVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHTT-SEEEEE-SSTT----SHHHHHHHHHHHHHST-TSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHcCCCEEEccccCcc----HHHHHHHHHHHHHhCC-CceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 8899999999854332 2335577888888775 789986 88999999999889999999888
No 281
>PRK06852 aldolase; Validated
Probab=95.61 E-value=0.19 Score=48.56 Aligned_cols=66 Identities=26% Similarity=0.282 Sum_probs=45.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH-HHHH----HHHH-hCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVF----KALA-LGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~----kala-lGAd~V~igr~~l 309 (366)
.+.|||.|.+--.+- .+-...+.+.++.+.+ +.+||++.||=+.. .|++ .++. .||.+|.+||=+.
T Consensus 198 aELGADIVKv~y~~~----~~~g~~e~f~~vv~~~-g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIf 269 (304)
T PRK06852 198 ACLGADFVKVNYPKK----EGANPAELFKEAVLAA-GRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIH 269 (304)
T ss_pred HHHcCCEEEecCCCc----CCCCCHHHHHHHHHhC-CCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhh
Confidence 999999998743210 0012345666676665 36899999998853 3444 4666 8999999999653
No 282
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=95.53 E-value=0.44 Score=44.23 Aligned_cols=48 Identities=8% Similarity=-0.055 Sum_probs=35.5
Q ss_pred cchHHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 260 PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 260 ~~~~~~l~~i~~~~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
+..++-+.++++... .++.|-+||||+ .+-+.+..++|||.+.+|+.+
T Consensus 160 ~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSal 210 (228)
T PRK08091 160 DLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQIDWVVSGSAL 210 (228)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChhh
Confidence 345555665555432 257799999996 667778889999999999874
No 283
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.52 E-value=0.081 Score=53.10 Aligned_cols=61 Identities=11% Similarity=0.256 Sum_probs=47.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|++....|. +....+.+.++++..+ +++|++ |+|.|.+++..++.+|||+|.+|
T Consensus 162 v~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~p-~~~vi~-g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 162 VKAHVDILVIDSAHGH----STRIIELVKKIKTKYP-NLDLIA-GNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HhcCCCEEEEECCCCC----ChhHHHHHHHHHhhCC-CCcEEE-EecCCHHHHHHHHHcCCCEEEEC
Confidence 8999999998754332 3345677888887664 466554 88999999999999999999877
No 284
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=95.51 E-value=0.18 Score=52.21 Aligned_cols=91 Identities=19% Similarity=0.253 Sum_probs=61.8
Q ss_pred HHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEcCCCccC--CCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH
Q 017781 217 VKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 289 (366)
Q Consensus 217 i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~ 289 (366)
+...|+..+...++. -+.+.++ .+.|+|+|.++--.-+. .+..+..++.+.++.+.. ++||++-|||. .+
T Consensus 380 ~~~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~ 456 (502)
T PLN02898 380 VRLARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-AS 456 (502)
T ss_pred HHHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HH
Confidence 345555543223333 3456666 68899999876432211 112223467777776655 79999999995 99
Q ss_pred HHHHHHHhCcC---EEEecHHHHH
Q 017781 290 DVFKALALGAS---GIFIGRPVVY 310 (366)
Q Consensus 290 dv~kalalGAd---~V~igr~~l~ 310 (366)
++.+.+++||+ +|.+++.++.
T Consensus 457 ~~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 457 NAASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHHHHcCCCcCceEEEEeHHhc
Confidence 99999999999 9999999863
No 285
>PLN02417 dihydrodipicolinate synthase
Probab=95.50 E-value=0.077 Score=50.68 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=66.3
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+|+|.+.++.|-...-... ..+.+..+++.+.+++||++.=|-.+-
T Consensus 17 g~iD~~~~~~~i~~l--------------~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t 82 (280)
T PLN02417 17 GRFDLEAYDSLVNMQ--------------IENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNST 82 (280)
T ss_pred CCcCHHHHHHHHHHH--------------HHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccH
Confidence 345666655554432 46799999998876643221221 234555566667778999886666566
Q ss_pred HHHHH----HHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHH
Q 017781 289 TDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 329 (366)
Q Consensus 289 ~dv~k----alalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~ 329 (366)
.|+++ |-++|||+|++-.|+++. ..++++.+++..+.+
T Consensus 83 ~~~i~~a~~a~~~Gadav~~~~P~y~~---~~~~~i~~~f~~va~ 124 (280)
T PLN02417 83 REAIHATEQGFAVGMHAALHINPYYGK---TSQEGLIKHFETVLD 124 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCccCC---CCHHHHHHHHHHHHh
Confidence 66664 456899999999998664 245666666655544
No 286
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=95.46 E-value=0.15 Score=48.92 Aligned_cols=82 Identities=12% Similarity=0.128 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCCceEEEecCCCC
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 287 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGI~~ 287 (366)
+.++.+|+..+-.-+.=.+.+.++ .++|+|.|.+.|. +.+.+.++.+.+ ..++.+-++||| +
T Consensus 178 ~av~~~r~~~~~~kIeVEv~tleqa~ea~~agaDiI~LDn~----------~~e~l~~av~~~~~~~~~~~leaSGGI-~ 246 (284)
T PRK06096 178 GAINQLRRHAPEKKIVVEADTPKEAIAALRAQPDVLQLDKF----------SPQQATEIAQIAPSLAPHCTLSLAGGI-N 246 (284)
T ss_pred HHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC-C
Confidence 458888887642224445567777 9999999998773 223344444433 257889999999 6
Q ss_pred HHHHHHHHHhCcCEEEecHH
Q 017781 288 GTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~ 307 (366)
.+.+.++-.+|+|.+.+|.+
T Consensus 247 ~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 247 LNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred HHHHHHHHhcCCCEEEECcc
Confidence 88888888899999999976
No 287
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=95.40 E-value=1.3 Score=41.87 Aligned_cols=88 Identities=27% Similarity=0.416 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCC-c--chHHHHHHHHHHcCCCceEEE
Q 017781 215 KDVKWLQTITKLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYV-P--ATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~-~--~~~~~l~~i~~~~~~~i~vi~ 281 (366)
+.++++-+ .++||++|-. .|.++ ...|-..|++.-+|=|..+.+ + -.+.+++-+++.. .+|||+
T Consensus 143 ~LLke~G~-~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPViv 219 (286)
T COG2876 143 ALLKEVGR-QNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPVIV 219 (286)
T ss_pred HHHHHhcc-cCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCEEE
Confidence 34444433 4899999955 46666 788888888887776655443 2 2456777777665 799999
Q ss_pred ec----CCCCHHH--HHHHHHhCcCEEEec
Q 017781 282 DG----GVRRGTD--VFKALALGASGIFIG 305 (366)
Q Consensus 282 ~G----GI~~~~d--v~kalalGAd~V~ig 305 (366)
|= |=|+... +..|++.|||++|+-
T Consensus 220 DpSH~~Grr~lv~pla~AA~AaGAdglmiE 249 (286)
T COG2876 220 DPSHATGRRDLVEPLAKAAIAAGADGLMIE 249 (286)
T ss_pred CCCCcccchhhHHHHHHHHHhccCCeeEEE
Confidence 74 3333322 235678999999986
No 288
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=95.34 E-value=0.53 Score=42.75 Aligned_cols=84 Identities=19% Similarity=0.183 Sum_probs=55.1
Q ss_pred CHHHHHHHHHhcCCCEE--EE---------eccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCc
Q 017781 213 SWKDVKWLQTITKLPIL--VK---------GVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 277 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~--vK---------~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i 277 (366)
..++|+.+|+.+++||| +| +..+.+| .++|++.|-+...-....++ +++ ++.+..+ .-
T Consensus 54 gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~---~~~---~~i~~~k-~~ 126 (229)
T COG3010 54 GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDG---DLE---ELIARIK-YP 126 (229)
T ss_pred chhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcc---hHH---HHHHHhh-cC
Confidence 45688889999999975 33 1234444 99999999887754322222 332 2222221 12
Q ss_pred eEEEecCCCCHHHHHHHHHhCcCEEE
Q 017781 278 PVFLDGGVRRGTDVFKALALGASGIF 303 (366)
Q Consensus 278 ~vi~~GGI~~~~dv~kalalGAd~V~ 303 (366)
-.++--.+.+.+|..-|..+|+|.|+
T Consensus 127 ~~l~MAD~St~ee~l~a~~~G~D~IG 152 (229)
T COG3010 127 GQLAMADCSTFEEGLNAHKLGFDIIG 152 (229)
T ss_pred CcEEEeccCCHHHHHHHHHcCCcEEe
Confidence 24444568899999999999999985
No 289
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=95.34 E-value=0.089 Score=57.22 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=51.0
Q ss_pred CCcEEEEcCCCccC-CCC-C-cchHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 242 GAAGIIVSNHGARQ-LDY-V-PATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 242 Gad~I~vs~~gg~~-~~~-~-~~~~~~l~~i~~~~~~-~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
|+|+|.++--.-+. ... . +..++.+.++++.+.. .+||++-||| +.+++.++++.||++|.+-+.++.
T Consensus 128 gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~ 199 (755)
T PRK09517 128 LPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMA 199 (755)
T ss_pred CCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhC
Confidence 59999987543221 111 1 2356778888777621 3999999999 899999999999999999999863
No 290
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.31 E-value=0.14 Score=45.95 Aligned_cols=76 Identities=26% Similarity=0.319 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 214 WKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 214 ~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
.+.++.+++.++ +++..-.+.+.++ .++|+|+|+..+ ...+ +.+.++.. .++++. |+.|.
T Consensus 43 ~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~----------~~~~-~~~~~~~~--~~~~i~--gv~t~ 107 (190)
T cd00452 43 LEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG----------LDPE-VVKAANRA--GIPLLP--GVATP 107 (190)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC----------CCHH-HHHHHHHc--CCcEEC--CcCCH
Confidence 456899998875 5555556666665 899999996322 1122 23333334 567765 78899
Q ss_pred HHHHHHHHhCcCEEEe
Q 017781 289 TDVFKALALGASGIFI 304 (366)
Q Consensus 289 ~dv~kalalGAd~V~i 304 (366)
+++.+|+.+|||.+.+
T Consensus 108 ~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 108 TEIMQALELGADIVKL 123 (190)
T ss_pred HHHHHHHHCCCCEEEE
Confidence 9999999999999998
No 291
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.30 E-value=0.44 Score=46.10 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=80.6
Q ss_pred eEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHh
Q 017781 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (366)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (366)
..+++. ..+++...+.++++.+.|++++-+.++..
T Consensus 126 ~~~~~~-~~~~~~~~~~~~~~~~~Gf~~iKik~g~~-------------------------------------------- 160 (316)
T cd03319 126 TDYTIS-IDTPEAMAAAAKKAAKRGFPLLKIKLGGD-------------------------------------------- 160 (316)
T ss_pred eEEEEe-CCCHHHHHHHHHHHHHcCCCEEEEEeCCC--------------------------------------------
Confidence 334543 35667777777788888999988765321
Q ss_pred hhccCCCCCHHHHHHHHHhcC-CCEEEEecc--CHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc
Q 017781 205 AGQIDRSLSWKDVKWLQTITK-LPILVKGVL--TAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT 273 (366)
Q Consensus 205 ~~~~d~~~~~~~i~~lr~~~~-~pv~vK~v~--~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~ 273 (366)
+....+.++.+|+.++ .++.++.-. +.++ .+.|+++|- +. ..+..++.+.++++..
T Consensus 161 -----~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iE-------eP-~~~~d~~~~~~L~~~~ 227 (316)
T cd03319 161 -----LEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELIE-------QP-VPAGDDDGLAYLRDKS 227 (316)
T ss_pred -----hhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEE-------CC-CCCCCHHHHHHHHhcC
Confidence 1123455666666553 556666432 2232 455666663 11 1234577788888876
Q ss_pred CCCceEEEecCCCCHHHHHHHHHhC-cCEEEecHH
Q 017781 274 QGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRP 307 (366)
Q Consensus 274 ~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~igr~ 307 (366)
++||++++.+.+..|+.+++..| +|.|++--.
T Consensus 228 --~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 228 --PLPIMADESCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred --CCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 79999999999999999999965 899988643
No 292
>PRK14057 epimerase; Provisional
Probab=95.25 E-value=0.69 Score=43.58 Aligned_cols=48 Identities=10% Similarity=0.163 Sum_probs=35.0
Q ss_pred cchHHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 260 PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 260 ~~~~~~l~~i~~~~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
+..++-+.++++... .++.|-+||||. .+-+.+..++|||.+..|+.+
T Consensus 174 ~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGad~~V~GSal 224 (254)
T PRK14057 174 SDLHERVAQLLCLLGDKREGKIIVIDGSLT-QDQLPSLIAQGIDRVVSGSAL 224 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChHh
Confidence 345555555555432 257899999995 457778889999999999875
No 293
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=95.25 E-value=0.48 Score=44.41 Aligned_cols=122 Identities=16% Similarity=0.250 Sum_probs=74.5
Q ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
|...+.+.+.+.++.++++|++++++.+-.+ +
T Consensus 67 Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~------------------------------------------------d 98 (248)
T PRK11572 67 YSDGEFAAMLEDIATVRELGFPGLVTGVLDV------------------------------------------------D 98 (248)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECC------------------------------------------------C
Confidence 4445566788888899999999998754322 2
Q ss_pred CCCCHHHHHHHHHhc-CCCEEEEec----cCHH----H-HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 210 RSLSWKDVKWLQTIT-KLPILVKGV----LTAE----D-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~-~~pv~vK~v----~~~~----d-~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
...+.+.++.+.+.. +.|+.+=-. .++. . .+.|+|.|--|+... .....++.|.++.+..++.+ |
T Consensus 99 g~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~----~a~~g~~~L~~lv~~a~~~~-I 173 (248)
T PRK11572 99 GHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQ----DAEQGLSLIMELIAASDGPI-I 173 (248)
T ss_pred CCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCC----CHHHHHHHHHHHHHhcCCCE-E
Confidence 233455555555554 355544322 1222 2 888999987654221 12223456666666554434 7
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
++-|||+ ...+.+-...|+..+-..
T Consensus 174 m~GgGV~-~~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 174 MAGAGVR-LSNLHKFLDAGVREVHSS 198 (248)
T ss_pred EeCCCCC-HHHHHHHHHcCCCEEeeC
Confidence 7777775 667777668999988765
No 294
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=95.24 E-value=0.023 Score=52.20 Aligned_cols=47 Identities=34% Similarity=0.581 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHcCCCce--EEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 262 TIMALEEVVKATQGRIP--VFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~--vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+.+.+.++.+.- ++| -++.|||.|+.|++-.+.||||+|.+|+-++.
T Consensus 194 p~elv~~~~~~g--rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 194 PYELVKEVAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred hHHHHHHHHHhC--CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccC
Confidence 456666666543 555 47999999999999999999999999997654
No 295
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.22 E-value=0.11 Score=50.04 Aligned_cols=89 Identities=16% Similarity=0.219 Sum_probs=59.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHH----HHHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~----kalalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|.+.++.|-...-... ..+.+..+++.+.+++||++.-|-.+-.|.+ +|-++|||+|++..|+++..
T Consensus 31 ~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~- 109 (294)
T TIGR02313 31 IEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKP- 109 (294)
T ss_pred HHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCC-
Confidence 46799999998876643221211 3345666666677789999766666666664 34558999999999987652
Q ss_pred hcCHHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLREE 330 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~e 330 (366)
.++++.+++..+.+.
T Consensus 110 --~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 110 --NQEALYDHFAEVADA 124 (294)
T ss_pred --CHHHHHHHHHHHHHh
Confidence 456666666555543
No 296
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=95.20 E-value=0.68 Score=45.44 Aligned_cols=123 Identities=22% Similarity=0.345 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCCEEEEecc--CHHH--------HHcCCcEEEEcCCCccCCCC-Cc--chHHHHHHHHHHcCCCceEE
Q 017781 214 WKDVKWLQTITKLPILVKGVL--TAED--------VQAGAAGIIVSNHGARQLDY-VP--ATIMALEEVVKATQGRIPVF 280 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~--~~~d--------~~aGad~I~vs~~gg~~~~~-~~--~~~~~l~~i~~~~~~~i~vi 280 (366)
...++++-+ +++||++|-.+ +.++ ...|-+-+++.-.|.+.... .. ..+..++.+++.. .+|||
T Consensus 190 ~~LL~~va~-~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPVi 266 (335)
T PRK08673 190 FDLLKEVGK-TNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPVI 266 (335)
T ss_pred HHHHHHHHc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCEE
Confidence 344555544 58999999653 5666 66777767665555544421 12 2455677776655 68999
Q ss_pred EecCCCCH------HHHHHHHHhCcCEEEecHHHHHHh-hhcCHHHH-HHHHHHHHHHHHHHHHHcC
Q 017781 281 LDGGVRRG------TDVFKALALGASGIFIGRPVVYSL-AAEGEKGV-RRVLEMLREEFELAMALSG 339 (366)
Q Consensus 281 ~~GGI~~~------~dv~kalalGAd~V~igr~~l~~l-~~~G~~gv-~~~~~~l~~el~~~m~~~G 339 (366)
++..=..| .-...|+++|||+++|-.-+--.- .++|+..+ -+-+..|.++++..-..+|
T Consensus 267 ~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i~~i~~~~g 333 (335)
T PRK08673 267 VDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred EeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence 87554444 455678899999999987542211 13343221 1234455555665555554
No 297
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.18 E-value=0.3 Score=49.35 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=61.1
Q ss_pred HHHHHhcCCCEEEEec-cCHHH----HHcCCcEEEEcCCCccC---CCCCcchHHHHHHHHHHcC-------CCceEEEe
Q 017781 218 KWLQTITKLPILVKGV-LTAED----VQAGAAGIIVSNHGARQ---LDYVPATIMALEEVVKATQ-------GRIPVFLD 282 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v-~~~~d----~~aGad~I~vs~~gg~~---~~~~~~~~~~l~~i~~~~~-------~~i~vi~~ 282 (366)
..+|+..+--.++... -+.++ .+.|+|+|.++--.-+. ....+-.++.|.++++.+. ..+||++-
T Consensus 291 ~~aR~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAI 370 (437)
T PRK12290 291 ANLAQLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAI 370 (437)
T ss_pred hhhhhhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEE
Confidence 3444443322334332 35555 77899999886432221 1223335666766665542 26999999
Q ss_pred cCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 283 GGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 283 GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
||| +.+++...++.||++|.+-|.++.
T Consensus 371 GGI-~~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 371 GGI-DQSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred CCc-CHHHHHHHHHcCCCEEEEehHhhc
Confidence 999 899999999999999999999874
No 298
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.17 E-value=0.1 Score=50.35 Aligned_cols=88 Identities=20% Similarity=0.331 Sum_probs=58.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHH----HHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~ka----lalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|.+.++.|-...-... ..+.+..+++.+.+++|||+.-|- +-.+.++. -.+|||+|++-.|+++..
T Consensus 38 ~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~- 115 (303)
T PRK03620 38 APYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYLTEA- 115 (303)
T ss_pred HHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCC-
Confidence 46799999998876643222222 234566667777778999986664 55666543 347999999999987642
Q ss_pred hcCHHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLREE 330 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~e 330 (366)
.++++.+++..+.+.
T Consensus 116 --~~~~i~~~f~~va~~ 130 (303)
T PRK03620 116 --PQEGLAAHVEAVCKS 130 (303)
T ss_pred --CHHHHHHHHHHHHHh
Confidence 456666666665543
No 299
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=95.13 E-value=0.041 Score=51.75 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHh--CcCEEEecHHHH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL--GASGIFIGRPVV 309 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalal--GAd~V~igr~~l 309 (366)
+.++.+.++++.+ ++|||++||+.+.+|+.+.-.+ |...+.+|+++.
T Consensus 188 ~dlel~~~l~~~~--~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf 236 (253)
T TIGR02129 188 IDEELVSKLGEWS--PIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALD 236 (253)
T ss_pred CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHH
Confidence 5788888888887 8999999999999999988555 555588888764
No 300
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.13 E-value=0.87 Score=41.67 Aligned_cols=87 Identities=16% Similarity=0.085 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCCEEEE---e-----c---cCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCce
Q 017781 214 WKDVKWLQTITKLPILVK---G-----V---LTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 278 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK---~-----v---~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~ 278 (366)
++.++.+|+.+++|++.. . + .+.++ .++|+|.|++...-.... .+....+.+..+++. ..++
T Consensus 45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p-~~~~~~~~i~~~~~~--~~i~ 121 (221)
T PRK01130 45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRP-DGETLAELVKRIKEY--PGQL 121 (221)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCC-CCCCHHHHHHHHHhC--CCCe
Confidence 467788888888898622 1 1 12222 899999888754221100 011223445555442 3677
Q ss_pred EEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 279 VFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 279 vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
++. ++.+.+++.++..+|+|.+.++
T Consensus 122 vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 122 LMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred EEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 775 5789999999999999999774
No 301
>PLN02591 tryptophan synthase
Probab=95.10 E-value=0.11 Score=48.81 Aligned_cols=36 Identities=31% Similarity=0.472 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEcC
Q 017781 215 KDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs~ 250 (366)
+.++++|+.+++||++. |+.++++ .+.|||+++|..
T Consensus 179 ~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 179 SLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred HHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 45999999999999998 4566887 889999999854
No 302
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.10 E-value=0.14 Score=47.02 Aligned_cols=77 Identities=25% Similarity=0.194 Sum_probs=54.6
Q ss_pred CHHHHHHHHHhcC----CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 213 SWKDVKWLQTITK----LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 213 ~~~~i~~lr~~~~----~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
..+.|+.+++.++ +.|.+..|++.++ .++|+++|+ |-+ ...+++..+. .. ++|++- |
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv-sP~---------~~~~v~~~~~-~~--~i~~iP--G 115 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV-SPS---------FNRETAKICN-LY--QIPYLP--G 115 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE-CCC---------CCHHHHHHHH-Hc--CCCEEC--C
Confidence 3466999998873 4455556788887 999999996 221 1223333322 22 566554 8
Q ss_pred CCCHHHHHHHHHhCcCEEEe
Q 017781 285 VRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~i 304 (366)
+.|+.++.+|+.+|||.|.+
T Consensus 116 ~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 116 CMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred cCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999998
No 303
>PRK08999 hypothetical protein; Provisional
Probab=95.08 E-value=0.12 Score=49.82 Aligned_cols=73 Identities=22% Similarity=0.247 Sum_probs=53.8
Q ss_pred ccCHHH----HHcCCcEEEEcCCCccC-C-CCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 233 VLTAED----VQAGAAGIIVSNHGARQ-L-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 233 v~~~~d----~~aGad~I~vs~~gg~~-~-~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
+-+.++ .+.|+|+|.++--.-+. . +..+..++.+.++++.. ++||++-||| +.+++...+++||++|.+-+
T Consensus 233 ~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~ 309 (312)
T PRK08999 233 CHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGIR 309 (312)
T ss_pred cCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEEE
Confidence 345555 57799999987543221 1 12223467788877766 7999999999 99999999999999998866
Q ss_pred HH
Q 017781 307 PV 308 (366)
Q Consensus 307 ~~ 308 (366)
.|
T Consensus 310 ~~ 311 (312)
T PRK08999 310 GL 311 (312)
T ss_pred Ee
Confidence 43
No 304
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.08 E-value=0.17 Score=49.39 Aligned_cols=91 Identities=15% Similarity=0.117 Sum_probs=60.3
Q ss_pred CCCCCHHH-HHHHHHh---cCCCEEEEeccCHHH-------HHc--CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCC
Q 017781 209 DRSLSWKD-VKWLQTI---TKLPILVKGVLTAED-------VQA--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQG 275 (366)
Q Consensus 209 d~~~~~~~-i~~lr~~---~~~pv~vK~v~~~~d-------~~a--Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~ 275 (366)
+..++.+. .+++++. ...-+.+-...+.+| .++ |+|.|++.-..|+ ....++.++.+++..+
T Consensus 75 Hk~~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~~~p- 149 (343)
T TIGR01305 75 HKHYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVREAFP- 149 (343)
T ss_pred eeCCCHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHhhCC-
Confidence 34455554 5555542 223344433344444 666 5999999865443 2346678888887763
Q ss_pred CceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 276 RIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 276 ~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
. +.+..|-|-|++++..++.+|||+|-+|
T Consensus 150 ~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 150 E-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred C-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 2 4555588999999999999999999777
No 305
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=95.02 E-value=0.41 Score=43.84 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=54.2
Q ss_pred ccCHHH----HHcCCcEEEEcCCCccC-CC--CCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 233 VLTAED----VQAGAAGIIVSNHGARQ-LD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 233 v~~~~d----~~aGad~I~vs~~gg~~-~~--~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
+-+.++ .+.|+|+|.++--..+. .. ..+..++.+.++.+.. .++||++-|||. .+++.+.++.||++|.+-
T Consensus 109 ~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvi 186 (211)
T PRK03512 109 THDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVGSIAVV 186 (211)
T ss_pred CCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCCEEEEh
Confidence 345555 56799999987533221 11 1223456666666542 169999999995 899999999999999999
Q ss_pred HHHHH
Q 017781 306 RPVVY 310 (366)
Q Consensus 306 r~~l~ 310 (366)
+.++.
T Consensus 187 sai~~ 191 (211)
T PRK03512 187 SAITQ 191 (211)
T ss_pred hHhhC
Confidence 98863
No 306
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.01 E-value=0.12 Score=49.48 Aligned_cols=87 Identities=21% Similarity=0.342 Sum_probs=58.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHH----HHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~ka----lalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|.+.++.|-...-... ..+.+..+++.+.+++|||+.-|- +-.+.++. -.+|||++++-.|+++..
T Consensus 31 ~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~- 108 (289)
T cd00951 31 LSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLTEA- 108 (289)
T ss_pred HHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCC-
Confidence 56799999998876643322222 234556666777778999997775 66666643 347999999999987642
Q ss_pred hcCHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLRE 329 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~ 329 (366)
.++++.+++..+.+
T Consensus 109 --~~~~i~~~f~~v~~ 122 (289)
T cd00951 109 --PQEGLYAHVEAVCK 122 (289)
T ss_pred --CHHHHHHHHHHHHh
Confidence 45666666655544
No 307
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.00 E-value=0.14 Score=52.95 Aligned_cols=245 Identities=19% Similarity=0.265 Sum_probs=134.1
Q ss_pred cccceeeecccc-CCCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc
Q 017781 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (366)
Q Consensus 42 ~f~~i~l~pr~l-~~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (366)
.|||+.|+|... ...+++|++|.+- +..+..|++.|||...+ |..||.+.++.|...+++. ++++|+..+
T Consensus 19 t~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~vt------~~~ma~a~a~~GglGvi~~--~~~~e~~~~ 90 (495)
T PTZ00314 19 TYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVT------EHKMAIAMALMGGIGVIHN--NCSIEEQVE 90 (495)
T ss_pred CccceEecccccccccccccccccccCCcccCCceeecCccccc------cHHHHHHHHHCCCeEEecC--CCCHHHHHH
Confidence 499999999865 3557899998876 46889999999996543 7899999999999999953 567776543
Q ss_pred cCC------Cc---eEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCC----CCc-chhHHHhhhcCCCCcccccccc
Q 017781 120 TGP------GI---RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP----RLG-RREADIKNRFTLPPFLTLKNFQ 185 (366)
Q Consensus 120 ~~~------~~---~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p----~~g-~r~~d~~~~~~~p~~~~~~~~~ 185 (366)
... .. -.+-+. ......+.++...+.++..+.|+-+-. ..| -..+|++..- .....+..+.
T Consensus 91 ~v~kvk~~e~g~i~dpvtv~---pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~--~~~~~V~diM 165 (495)
T PTZ00314 91 EVRKVKRFENGFIMDPYVLS---PNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK--DKSTPVSEVM 165 (495)
T ss_pred HHhhccccccccccCCeecC---CCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--cCCCCHHHhh
Confidence 211 00 011122 222345556666778888777753310 011 1223332100 0000000000
Q ss_pred cc--ccCCCcc-ccchhhHHHhhhc-------cC--C----CCCHHHHHHHHHh------cCCCEEEEec--cCHHH---
Q 017781 186 GL--DLGKMDE-ANDSGLAAYVAGQ-------ID--R----SLSWKDVKWLQTI------TKLPILVKGV--LTAED--- 238 (366)
Q Consensus 186 ~~--~~~~~~~-~~~~~~~~~~~~~-------~d--~----~~~~~~i~~lr~~------~~~pv~vK~v--~~~~d--- 238 (366)
.- ....... .........+... .+ . -.+.+++...+.. -...+.|-.. .++++
T Consensus 166 t~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~ 245 (495)
T PTZ00314 166 TPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIER 245 (495)
T ss_pred CCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHH
Confidence 00 0000000 0000000000000 00 0 0122222222110 0123344322 23332
Q ss_pred ----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 ----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|++....|+. ...++.+.++++..+ +++|++ |.|.|.+++..++.+|||++-+|
T Consensus 246 ~~~l~~ag~d~i~id~a~G~s----~~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 246 AAALIEAGVDVLVVDSSQGNS----IYQIDMIKKLKSNYP-HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHCCCCEEEEecCCCCc----hHHHHHHHHHHhhCC-CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 99999999988644432 234678888887753 688887 99999999999999999999754
No 308
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.98 E-value=0.076 Score=55.00 Aligned_cols=246 Identities=17% Similarity=0.213 Sum_probs=131.9
Q ss_pred hcccceeeeccccC-CCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHh
Q 017781 41 NAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (366)
Q Consensus 41 ~~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~ 118 (366)
-.|||+.|+|.... ..+++|++|.+. ...+..||+.|||...+ +..+|.+.++.|...+++. +.+.|+..
T Consensus 22 ltfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt------~~~lA~Ama~aGGiGfI~~--~as~E~q~ 93 (505)
T PLN02274 22 YTYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVT------ESDMAIAMAALGGIGIVHY--NNTAEEQA 93 (505)
T ss_pred CCccceEecccccCcCCcccccccccccccCcCCCEeccCCcccc------hHHHHHHHHhCCCeEEEcC--CCCHHHHH
Confidence 45999999998653 457889988775 46788999999996544 6789999999998777763 44555443
Q ss_pred c----cC--CC---ceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCC----CCCc-chhHHHhhhcCCCCccccccc
Q 017781 119 S----TG--PG---IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT----PRLG-RREADIKNRFTLPPFLTLKNF 184 (366)
Q Consensus 119 ~----~~--~~---~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~----p~~g-~r~~d~~~~~~~p~~~~~~~~ 184 (366)
+ .. .. +..+.+ .......+.++...+.++..+.|+-+. -..| -..+|++..-. + ......+
T Consensus 94 ~~Irkvk~~~~gmi~dpvtV---~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~-~-~~~V~eI 168 (505)
T PLN02274 94 AIVRKAKSRRVGFVSDPVVK---SPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVND-R-ETKLSEV 168 (505)
T ss_pred HHHHHhhcccccccCCCeee---CCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccc-c-CCcHHHH
Confidence 2 11 10 011112 222334455666677788877765321 0001 11223221000 0 0000000
Q ss_pred cccc--cCCCcc-ccchhhHHHhhhc-------cC------CCCCHHHHHHHHHhc---------CCCEEEEec--cCHH
Q 017781 185 QGLD--LGKMDE-ANDSGLAAYVAGQ-------ID------RSLSWKDVKWLQTIT---------KLPILVKGV--LTAE 237 (366)
Q Consensus 185 ~~~~--~~~~~~-~~~~~~~~~~~~~-------~d------~~~~~~~i~~lr~~~---------~~pv~vK~v--~~~~ 237 (366)
..-. ...+.. .........+... .| .-.+.+++....+.- +..+.|... .+.+
T Consensus 169 Mt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~ 248 (505)
T PLN02274 169 MTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRES 248 (505)
T ss_pred hccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCcc
Confidence 0000 000000 0000000000000 00 012344444433321 123444422 2222
Q ss_pred H-------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 238 D-------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 238 d-------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
+ .++|+|.|.++...|. ....|+.+.++++..+ +++||+ |+|.|.+++..++.+|||+|.+|
T Consensus 249 ~~~r~~~l~~ag~d~i~iD~~~g~----~~~~~~~i~~ik~~~p-~~~vi~-g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 249 DKERLEHLVKAGVDVVVLDSSQGD----SIYQLEMIKYIKKTYP-ELDVIG-GNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCC----cHHHHHHHHHHHHhCC-CCcEEE-ecCCCHHHHHHHHHcCcCEEEEC
Confidence 2 9999999999875442 2346688888887663 455555 88999999999999999999775
No 309
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=94.98 E-value=0.29 Score=47.29 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=62.9
Q ss_pred HHHHHHHHhcC-CCEEEE---eccCHHH----HH------cCCcEEEEcCC--CccCCCCCcchHHHHHHHHHHcCCCce
Q 017781 215 KDVKWLQTITK-LPILVK---GVLTAED----VQ------AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIP 278 (366)
Q Consensus 215 ~~i~~lr~~~~-~pv~vK---~v~~~~d----~~------aGad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~ 278 (366)
+.++.+|+..+ .+...| .+-+.++ .+ +|+|.|-+.|. .... ...+.+.+.++.+.++++.+
T Consensus 188 ~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~---~~~~~e~l~~av~~~~~~~~ 264 (308)
T PLN02716 188 NAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLEN---GDVDVSMLKEAVELINGRFE 264 (308)
T ss_pred HHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccc---cCCCHHHHHHHHHhhCCCce
Confidence 34777777321 122223 3467776 88 99999999985 1111 11255666676666666789
Q ss_pred EEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 279 VFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 279 vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
+-++||| +.+.+.++..+|+|.+.+|.+..
T Consensus 265 lEaSGGI-t~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 265 TEASGNV-TLDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred EEEECCC-CHHHHHHHHHcCCCEEEeCcccc
Confidence 9999999 67888888889999999997654
No 310
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=94.95 E-value=0.23 Score=48.46 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=49.8
Q ss_pred HHcC--CcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aG--ad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++| +|.|++.-..|+ ....++.++++++.. ..|.+..|.|-+++++..++.+|||+|-+|
T Consensus 103 v~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~~--p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 103 AEEALTPEYITIDIAHGH----SNSVINMIKHIKTHL--PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred HhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 7888 799998764442 235667888888877 568888899999999999999999999877
No 311
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=94.91 E-value=0.13 Score=49.77 Aligned_cols=103 Identities=21% Similarity=0.319 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+++|.+.++.|-...-... ..+.+..+++.+.+++|||+.-|=.+-
T Consensus 24 g~iD~~~l~~lv~~l--------------i~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t 89 (309)
T cd00952 24 DTVDLDETARLVERL--------------IAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNT 89 (309)
T ss_pred CCcCHHHHHHHHHHH--------------HHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCH
Confidence 345666665555432 56899999998876643222222 234555666677778999986665566
Q ss_pred HHHHHHH----HhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHH
Q 017781 289 TDVFKAL----ALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 329 (366)
Q Consensus 289 ~dv~kal----alGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~ 329 (366)
.|+++.. .+|||+|++-.|+++.. .++++.++++.+.+
T Consensus 90 ~~ai~~a~~A~~~Gad~vlv~~P~y~~~---~~~~l~~yf~~va~ 131 (309)
T cd00952 90 RDTIARTRALLDLGADGTMLGRPMWLPL---DVDTAVQFYRDVAE 131 (309)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCcCCCC---CHHHHHHHHHHHHH
Confidence 6666433 47999999999987642 35665555555444
No 312
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=94.91 E-value=0.13 Score=50.31 Aligned_cols=71 Identities=24% Similarity=0.244 Sum_probs=46.3
Q ss_pred HHcCCcEEEEcCCC---c-------cCC------CCCcchHHHHHHHHHHc-CCCceEEEecCCCCH-HHH----HHH--
Q 017781 239 VQAGAAGIIVSNHG---A-------RQL------DYVPATIMALEEVVKAT-QGRIPVFLDGGVRRG-TDV----FKA-- 294 (366)
Q Consensus 239 ~~aGad~I~vs~~g---g-------~~~------~~~~~~~~~l~~i~~~~-~~~i~vi~~GGI~~~-~dv----~ka-- 294 (366)
.+.|||.|.+--.+ + ... ...-...+.+..+.+.+ .+.+||+.+||=+.. .|+ ..+
T Consensus 227 aELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~ 306 (348)
T PRK09250 227 ATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVI 306 (348)
T ss_pred HHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 89999999975322 1 100 00112345566666655 347999999999853 333 356
Q ss_pred -HHhCcCEEEecHHHH
Q 017781 295 -LALGASGIFIGRPVV 309 (366)
Q Consensus 295 -lalGAd~V~igr~~l 309 (366)
+..||.+|.+||=..
T Consensus 307 ~i~aGa~Gv~iGRNIf 322 (348)
T PRK09250 307 NKRAGGMGLIIGRKAF 322 (348)
T ss_pred hhhcCCcchhhchhhh
Confidence 778999999999654
No 313
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=94.89 E-value=0.16 Score=48.23 Aligned_cols=88 Identities=22% Similarity=0.402 Sum_probs=59.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|.+.++.|....-... ..+.+..+++.+++++||++.-|-.+-.+.++ |-.+|||+|++..|+++.
T Consensus 28 ~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~-- 105 (281)
T cd00408 28 IEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNK-- 105 (281)
T ss_pred HHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCC--
Confidence 45699999998876643322222 33556666777777899988766666665554 334799999999998775
Q ss_pred hcCHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLRE 329 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~ 329 (366)
..++++.+++..+.+
T Consensus 106 -~~~~~~~~~~~~ia~ 120 (281)
T cd00408 106 -PSQEGIVAHFKAVAD 120 (281)
T ss_pred -CCHHHHHHHHHHHHh
Confidence 245666666555544
No 314
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=94.83 E-value=0.16 Score=47.38 Aligned_cols=104 Identities=20% Similarity=0.360 Sum_probs=66.0
Q ss_pred CceEEEeeecCCHH----HHHHHHHHHHHc---CCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccc
Q 017781 123 GIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (366)
Q Consensus 123 ~~~~~Qly~~~d~~----~~~~~l~ra~~~---G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (366)
+..|+.|-+-.|+. ...+.++++++. |+..+-+..|.|...+|..++.-.+-.| +
T Consensus 90 ~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmP-------l----------- 151 (248)
T cd04728 90 GTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMP-------L----------- 151 (248)
T ss_pred CCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCC-------C-----------
Confidence 34577765433332 245566677776 9999877778887777776652111111 0
Q ss_pred cchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEe-ccCHHH----HHcCCcEEEEcC
Q 017781 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~-v~~~~d----~~aGad~I~vs~ 250 (366)
++.+.+ ..+-.+++.|+.+++..++||++-+ +.+++| .+.|+|++.|..
T Consensus 152 -----g~pIGs-g~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 152 -----GSPIGS-GQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred -----CcCCCC-CCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 000111 1122357889999998889999985 578888 999999998743
No 315
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=94.81 E-value=1.2 Score=40.77 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCCEEE---Eec--------cCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 215 KDVKWLQTITKLPILV---KGV--------LTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~v---K~v--------~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
+.++++|+..++|++. |.. .+.++ .++|+|.|++.....+ ...+....+.+..+++.. ++++
T Consensus 50 ~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g--~~~i 126 (219)
T cd04729 50 EDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEY--NCLL 126 (219)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHh--CCeE
Confidence 4667777767888763 222 12222 8999998876432111 001112334555555443 5777
Q ss_pred EEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 280 FLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 280 i~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
+. ++.+.+++.++..+|+|.+.+.
T Consensus 127 iv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 127 MA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred EE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 66 6899999999999999999653
No 316
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=94.76 E-value=0.16 Score=47.22 Aligned_cols=66 Identities=30% Similarity=0.473 Sum_probs=51.6
Q ss_pred HHcCCcEEEEcC-CCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
.+.||..+.+-- .|. ..+++-..+++.++.+.+ ++||=.-||||+-+++.+.|.+|++-|.+|+.-
T Consensus 41 ~~~Ga~~lHlVDLdgA--~~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 41 SDQGAEWLHLVDLDGA--KAGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred HHcCCcEEEEeecccc--ccCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 456777776422 121 123455778999999988 899999999999999999999999999999943
No 317
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.76 E-value=0.17 Score=48.95 Aligned_cols=103 Identities=24% Similarity=0.364 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCH
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG 288 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~ 288 (366)
...+++.++++.+.. .+.|+|+|++.++.|-...-... ..+.+..+++.+.+++|||+--|=.+-
T Consensus 20 g~vD~~a~~~lv~~l--------------i~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t 85 (299)
T COG0329 20 GSVDEEALRRLVEFL--------------IAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNST 85 (299)
T ss_pred CCcCHHHHHHHHHHH--------------HHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcH
Confidence 345666666555432 57899999998877643222222 234566667777788998885554444
Q ss_pred HHHH----HHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHH
Q 017781 289 TDVF----KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 329 (366)
Q Consensus 289 ~dv~----kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~ 329 (366)
.+++ .|-.+|||++++-.|+++.. .++++.+.+..+.+
T Consensus 86 ~eai~lak~a~~~Gad~il~v~PyY~k~---~~~gl~~hf~~ia~ 127 (299)
T COG0329 86 AEAIELAKHAEKLGADGILVVPPYYNKP---SQEGLYAHFKAIAE 127 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcCC---ChHHHHHHHHHHHH
Confidence 4443 33448999999999998753 34555444444433
No 318
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.68 E-value=0.68 Score=45.69 Aligned_cols=124 Identities=19% Similarity=0.324 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCCCEEEEecc--CHHH--------HHcCCcEEEEcCCCccCCCC----CcchHHHHHHHHHHcCCCceE
Q 017781 214 WKDVKWLQTITKLPILVKGVL--TAED--------VQAGAAGIIVSNHGARQLDY----VPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~--~~~d--------~~aGad~I~vs~~gg~~~~~----~~~~~~~l~~i~~~~~~~i~v 279 (366)
...++++-+ +++||++|-.+ +.++ .+.|-+-|++.-.|-|.... -...+.+++.+++.. .+||
T Consensus 198 ~~LL~~va~-t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~--~lPV 274 (352)
T PRK13396 198 FSLLKKVGA-QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLT--HLPI 274 (352)
T ss_pred HHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhh--CCCE
Confidence 445666655 58999999553 6666 66788777766555444432 223567788777655 6899
Q ss_pred EEec----CCCC--HHHHHHHHHhCcCEEEecHHHHHHh-hhcCHHHH-HHHHHHHHHHHHHHHHHcCC
Q 017781 280 FLDG----GVRR--GTDVFKALALGASGIFIGRPVVYSL-AAEGEKGV-RRVLEMLREEFELAMALSGC 340 (366)
Q Consensus 280 i~~G----GI~~--~~dv~kalalGAd~V~igr~~l~~l-~~~G~~gv-~~~~~~l~~el~~~m~~~G~ 340 (366)
|+|- |.++ ..-...|+++|||+++|=.-+--.- .++|+..+ -+-++.|.++++..-..+|.
T Consensus 275 i~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g~ 343 (352)
T PRK13396 275 MIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIGKTVGR 343 (352)
T ss_pred EECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 9983 3332 2344577889999999987542211 11232211 12344555666666555553
No 319
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.67 E-value=0.17 Score=49.22 Aligned_cols=210 Identities=17% Similarity=0.225 Sum_probs=106.4
Q ss_pred eeEcCcccCCceEecccccccccCChh---h--HHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHH
Q 017781 63 TTVLGFKISMPIMIAPTAMQKMAHPEG---E--YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNV 137 (366)
Q Consensus 63 t~l~g~~l~~Pi~iApm~~~~l~~~~~---e--~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~ 137 (366)
.+|.+.++++-|++|||+-.. ..+++ + ...-+.-++-|+++++++....+.+ ....+ ...-+|....-+.
T Consensus 4 ~~i~~~~l~NR~~~~p~~~~~-~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~--~~~~~--~~~~~~~~~~~~~ 78 (327)
T cd02803 4 IKIGGLTLKNRIVMAPMTENM-ATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPE--GKGYP--GQLGIYDDEQIPG 78 (327)
T ss_pred cccCCEeeccccEeccccccc-ccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCc--ccCCC--CCcCcCCHHHHHH
Confidence 467788999999999996332 22222 2 3444444456788887665433211 11111 1122332233455
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHH
Q 017781 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (366)
.+++++.+++.|++.++ -+.. .|++......+. .|. . .+ . ............++.++|
T Consensus 79 ~~~~~~~vh~~g~~~~~-Ql~h--~G~~~~~~~~~~-~~~--~-----------~s--~---~~~~~~~~~~~~mt~~ei 136 (327)
T cd02803 79 LRKLTEAVHAHGAKIFA-QLAH--AGRQAQPNLTGG-PPP--A-----------PS--A---IPSPGGGEPPREMTKEEI 136 (327)
T ss_pred HHHHHHHHHhCCCHhhH-HhhC--CCcCCCCcCCCC-Ccc--C-----------CC--C---CCCCCCCCCCCcCCHHHH
Confidence 77778888888877542 2222 222210000000 000 0 00 0 000000001234677888
Q ss_pred HHHHHhcCCCEEEEeccCHHH-HHcCCcEEEEcCCCcc---C----------CCCCcc-------hHHHHHHHHHHcCCC
Q 017781 218 KWLQTITKLPILVKGVLTAED-VQAGAAGIIVSNHGAR---Q----------LDYVPA-------TIMALEEVVKATQGR 276 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v~~~~d-~~aGad~I~vs~~gg~---~----------~~~~~~-------~~~~l~~i~~~~~~~ 276 (366)
+++.+.+- ..... .++|+|+|.++...|. | ..+|-+ ..+.+..+++.++.+
T Consensus 137 ~~~i~~~~--------~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d 208 (327)
T cd02803 137 EQIIEDFA--------AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPD 208 (327)
T ss_pred HHHHHHHH--------HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 88877642 01222 8899999999754332 1 111211 246677777777667
Q ss_pred ceEEE--e------cCCCCHH---HHHHHHH-hCcCEEEecHHH
Q 017781 277 IPVFL--D------GGVRRGT---DVFKALA-LGASGIFIGRPV 308 (366)
Q Consensus 277 i~vi~--~------GGI~~~~---dv~kala-lGAd~V~igr~~ 308 (366)
+||.+ + +|. +.+ ++++.++ +|+|.+-+...+
T Consensus 209 ~~i~vris~~~~~~~g~-~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 209 FPVGVRLSADDFVPGGL-TLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred ceEEEEechhccCCCCC-CHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 77765 3 222 334 4456665 799999876543
No 320
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.66 E-value=0.71 Score=43.55 Aligned_cols=60 Identities=30% Similarity=0.467 Sum_probs=44.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC-HHH-----HHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTD-----VFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~-~~d-----v~kalalGAd~V~igr~~l 309 (366)
.+.|||.|.+.=.| ..+...++.+.+ .+||+.+||=++ .++ +..++..||.++.+||=+.
T Consensus 176 aelGADIiK~~ytg---------~~e~F~~vv~~~--~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNif 241 (265)
T COG1830 176 AELGADIIKTKYTG---------DPESFRRVVAAC--GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIF 241 (265)
T ss_pred HHhcCCeEeecCCC---------ChHHHHHHHHhC--CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhh
Confidence 89999999863222 225667777777 499999999988 333 2345668999999999764
No 321
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.64 E-value=0.098 Score=53.44 Aligned_cols=61 Identities=21% Similarity=0.362 Sum_probs=49.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|.|....|+ ....++.+.++++..+ ++||++ |.|-|.+++..++.+|||+|-+|
T Consensus 233 ~~aG~d~I~vd~a~g~----~~~~~~~i~~i~~~~~-~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 233 VKAGVDVIVIDSSHGH----SIYVIDSIKEIKKTYP-DLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHhCCCEEEEECCCCc----HhHHHHHHHHHHHhCC-CCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 8999999999874442 2346678888887653 689888 99999999999999999999766
No 322
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=94.58 E-value=0.52 Score=44.69 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCEEEEe-ccCHHH----HHcCCcEEEEcC
Q 017781 214 WKDVKWLQTITKLPILVKG-VLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~-v~~~~d----~~aGad~I~vs~ 250 (366)
.+.++++|+.++.|+.+.. +.++++ .++|||+++|..
T Consensus 191 ~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 191 KKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 3568999999999999984 456777 789999999854
No 323
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.58 E-value=0.4 Score=46.98 Aligned_cols=90 Identities=19% Similarity=0.202 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCCEEEEec-cCHHH--------HHcCCcEEEEcC---CCccCCCCC-c--chHHHHHHHHHHcCCCceE
Q 017781 215 KDVKWLQTITKLPILVKGV-LTAED--------VQAGAAGIIVSN---HGARQLDYV-P--ATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v-~~~~d--------~~aGad~I~vs~---~gg~~~~~~-~--~~~~~l~~i~~~~~~~i~v 279 (366)
+.++.+++..++|++++.. .+.++ .++|+|+|.+.- ++.....+. + ..++.+.++++.+ ++||
T Consensus 91 ~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iPV 168 (334)
T PRK07565 91 ELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIPV 168 (334)
T ss_pred HHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCcE
Confidence 3466676767899999975 34443 778999999832 111111111 1 1345666666665 6898
Q ss_pred EEe--cCCCCHHHHHHHHH-hCcCEEEecH
Q 017781 280 FLD--GGVRRGTDVFKALA-LGASGIFIGR 306 (366)
Q Consensus 280 i~~--GGI~~~~dv~kala-lGAd~V~igr 306 (366)
++- +++.+..++++++. .|||+|.+-.
T Consensus 169 ~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n 198 (334)
T PRK07565 169 AVKLSPYFSNLANMAKRLDAAGADGLVLFN 198 (334)
T ss_pred EEEeCCCchhHHHHHHHHHHcCCCeEEEEC
Confidence 876 45556778888775 8999987743
No 324
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=94.57 E-value=0.7 Score=44.36 Aligned_cols=98 Identities=19% Similarity=0.218 Sum_probs=70.2
Q ss_pred HHcCCcEEEEcC---CCccCCCCCc--chHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l 312 (366)
.+.|+|.+-++. ||- +.+. -.++.|.+|++.+ ++|+..=||=..+ +++.|++.+|..-|-+++-+-.+.
T Consensus 166 ~~TgvD~LAvaiGt~HG~---Y~~~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~ 240 (285)
T PRK07709 166 EATGIDCLAPALGSVHGP---YKGEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEF 240 (285)
T ss_pred HHhCCCEEEEeecccccC---cCCCCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHH
Confidence 678999999874 442 2233 3678899999988 7999999987777 677789999999999999765432
Q ss_pred hh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 313 AA-------EG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 313 ~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
.. .. ..-.....+.+++..+..|+.+|+.
T Consensus 241 ~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 282 (285)
T PRK07709 241 TKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 282 (285)
T ss_pred HHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 10 00 1223344566778888888888864
No 325
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.55 E-value=4.6 Score=38.75 Aligned_cols=98 Identities=19% Similarity=0.264 Sum_probs=67.3
Q ss_pred HHcCCcEEEEcC---CCccCCCCCc--chHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l 312 (366)
.+.|+|.+-|+. ||.+ .+. -.++.|.+|++.+ ++|+..=||=..+ +++.|++.+|..-|-+++-+..+.
T Consensus 165 ~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a~ 239 (284)
T PRK12857 165 EETGVDALAIAIGTAHGPY---KGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNIREAF 239 (284)
T ss_pred HHHCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHHH
Confidence 567899998874 4432 233 3678899999988 7999888865554 556779999999999999775442
Q ss_pred hh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 313 AA-------EG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 313 ~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
.. .. ..-.....+.+++..+..|+.+|..
T Consensus 240 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12857 240 VARLREVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSA 281 (284)
T ss_pred HHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 10 00 1223444566777777888887754
No 326
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.55 E-value=0.24 Score=45.08 Aligned_cols=77 Identities=16% Similarity=0.197 Sum_probs=52.9
Q ss_pred CHHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
..+.|+.+++..+ +-|....|++.++ .++|+++|+ |-+ ...+.+..++ .. ++|++ =|+.|
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv-SP~---------~~~~vi~~a~-~~--~i~~i--PG~~T 106 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV-SPG---------TTQELLAAAN-DS--DVPLL--PGAAT 106 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE-CCC---------CCHHHHHHHH-Hc--CCCEe--CCCCC
Confidence 3466888988774 4455556788887 999999996 221 1223333333 22 44444 58999
Q ss_pred HHHHHHHHHhCcCEEEe
Q 017781 288 GTDVFKALALGASGIFI 304 (366)
Q Consensus 288 ~~dv~kalalGAd~V~i 304 (366)
+.++..|+.+||+.|=+
T Consensus 107 ptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 107 PSEVMALREEGYTVLKF 123 (201)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999998843
No 327
>PRK00208 thiG thiazole synthase; Reviewed
Probab=94.52 E-value=0.2 Score=46.82 Aligned_cols=104 Identities=20% Similarity=0.340 Sum_probs=65.9
Q ss_pred CceEEEeeecCCHH----HHHHHHHHHHHc---CCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccc
Q 017781 123 GIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (366)
Q Consensus 123 ~~~~~Qly~~~d~~----~~~~~l~ra~~~---G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (366)
+..|+.|-+-.|+. ...+.+++++.. |+..+-+..|.|...+|..++.-.+-.| +
T Consensus 90 ~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmP-------l----------- 151 (250)
T PRK00208 90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMP-------L----------- 151 (250)
T ss_pred CCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCC-------C-----------
Confidence 34577775433322 245566777776 9999877778887777776652111111 0
Q ss_pred cchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEe-ccCHHH----HHcCCcEEEEcC
Q 017781 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~-v~~~~d----~~aGad~I~vs~ 250 (366)
++.+.+ ..+-.+++.++.+++..++||++-+ +.+++| .+.|+|++.|..
T Consensus 152 -----g~pIGs-g~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 152 -----GAPIGS-GLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred -----CcCCCC-CCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 000111 1122257779999998889999985 568888 999999998743
No 328
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.50 E-value=2.8 Score=40.24 Aligned_cols=182 Identities=18% Similarity=0.098 Sum_probs=96.7
Q ss_pred hHHHHHHHHHc---------CCceec-CCCC-----------CCCHHHHhc-------cCCCceEEEeeecCCHHHHHHH
Q 017781 90 EYATARAASAA---------GTIMTL-SSWS-----------TSSVEEVAS-------TGPGIRFFQLYVYKDRNVVAQL 141 (366)
Q Consensus 90 e~~la~aa~~~---------G~~~~v-s~~~-----------~~~~e~i~~-------~~~~~~~~Qly~~~d~~~~~~~ 141 (366)
+...|+.+++. |...+- |+.+ ..+.+|... ...-|..+=.=.+.++..+.+.
T Consensus 18 D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~ 97 (285)
T TIGR02320 18 NGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRL 97 (285)
T ss_pred CHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHH
Confidence 55678888888 776553 3211 124444432 2223544444334677788888
Q ss_pred HHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHH
Q 017781 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQ 221 (366)
Q Consensus 142 l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr 221 (366)
+++..++|+.++.|. |.. .|++... +.. . +.... .+...-.+.|+..+
T Consensus 98 V~~l~~aGvaGi~iE-Dq~--------------~pk~cg~--~~~---------~--~~~~l----~s~ee~~~kI~Aa~ 145 (285)
T TIGR02320 98 VRKLERRGVSAVCIE-DKL--------------GLKKNSL--FGN---------D--VAQPQ----ASVEEFCGKIRAGK 145 (285)
T ss_pred HHHHHHcCCeEEEEe-ccC--------------CCccccc--cCC---------C--Ccccc----cCHHHHHHHHHHHH
Confidence 999999999888762 211 1221110 000 0 00000 00011123355554
Q ss_pred Hh-c--CCCEEEE----e-ccCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCC---CceEEEe
Q 017781 222 TI-T--KLPILVK----G-VLTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLD 282 (366)
Q Consensus 222 ~~-~--~~pv~vK----~-v~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~i~vi~~ 282 (366)
+. . +++|+.. . ..+.++ .++|||+|.+-. ++.+.+.+.++.+.++. ++|+++.
T Consensus 146 ~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~--------~~~~~~ei~~~~~~~~~~~p~~pl~~~ 217 (285)
T TIGR02320 146 DAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHS--------RKKDPDEILEFARRFRNHYPRTPLVIV 217 (285)
T ss_pred HhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecC--------CCCCHHHHHHHHHHhhhhCCCCCEEEe
Confidence 43 2 4566666 1 224444 999999998842 22455666666666543 5687765
Q ss_pred cCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 283 GGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 283 GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.+-.-...+...-++|.+.|..|..++++
T Consensus 218 ~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 218 PTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred cCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 43111123445556899999999877664
No 329
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.49 E-value=0.27 Score=47.97 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=45.6
Q ss_pred cCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 241 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 241 aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
+|+|.|+++-..|+ ....++.++++++..+ +++||+ |.|-|++-+...+.+|||+|=+|
T Consensus 121 ~g~D~iviD~AhGh----s~~~i~~ik~ik~~~P-~~~vIa-GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 121 PALNFICIDVANGY----SEHFVQFVAKAREAWP-DKTICA-GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred CCCCEEEEECCCCc----HHHHHHHHHHHHHhCC-CCcEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 69999999864442 2346778888888774 577666 99999998888888999998544
No 330
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=94.39 E-value=0.24 Score=47.59 Aligned_cols=88 Identities=10% Similarity=0.150 Sum_probs=56.0
Q ss_pred HHcC-CcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHh
Q 017781 239 VQAG-AAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aG-ad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l 312 (366)
.+.| +|+|.+.++.|-...-... ..+.+..+++.+.+++||++.=|-.+-.|+++ |-.+|||+|++..|+.+..
T Consensus 31 i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~ 110 (290)
T TIGR00683 31 IDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKF 110 (290)
T ss_pred HhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCC
Confidence 4678 9999998876643222222 23445556666677899987645444555543 3348999999999987652
Q ss_pred hhcCHHHHHHHHHHHHH
Q 017781 313 AAEGEKGVRRVLEMLRE 329 (366)
Q Consensus 313 ~~~G~~gv~~~~~~l~~ 329 (366)
.++++.+++..+.+
T Consensus 111 ---~~~~i~~yf~~v~~ 124 (290)
T TIGR00683 111 ---SFPEIKHYYDTIIA 124 (290)
T ss_pred ---CHHHHHHHHHHHHh
Confidence 34555555555543
No 331
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=94.30 E-value=1.6 Score=42.40 Aligned_cols=239 Identities=17% Similarity=0.178 Sum_probs=121.5
Q ss_pred eEcCccc---CCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhcc-CC----------CceEEEe
Q 017781 64 TVLGFKI---SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST-GP----------GIRFFQL 129 (366)
Q Consensus 64 ~l~g~~l---~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~-~~----------~~~~~Ql 129 (366)
+++|+.+ ..|++||=+|...-..-+--.++.++|+++|+-.+=- +.-...+.+... .+ +.-.+|+
T Consensus 3 ~Ig~r~i~~~~~~~iIAEig~NHnG~le~A~~lIdaAk~aGADavKf-Qt~~~~d~~t~~~~~~~~~i~~~~~~~slyel 81 (347)
T COG2089 3 KIGNRTIGKDKKPFIIAEIGANHNGDLERAKELIDAAKEAGADAVKF-QTFYTPDIMTLESKNVPFKIKTLWDKVSLYEL 81 (347)
T ss_pred eeCceeecCCCCcEEEeeecccccCcHHHHHHHHHHHHHcCcceeee-ecccccccccccccCCccccccccccccHHHH
Confidence 4555543 5799999987543211122358889999999987621 111111222111 00 1122444
Q ss_pred ee--cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhc
Q 017781 130 YV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ 207 (366)
Q Consensus 130 y~--~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (366)
|- .-+.++..++.+.|++.|.-.+ .+| ...+..|+.+.+..|. + .+
T Consensus 82 ~e~~~~p~e~~~~Lke~a~~~Gi~~~----SSP-fd~~svd~l~~~~~~a---------y---KI--------------- 129 (347)
T COG2089 82 YEEAETPLEWHAQLKEYARKRGIIFF----SSP-FDLTAVDLLESLNPPA---------Y---KI--------------- 129 (347)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCeEEE----ecC-CCHHHHHHHHhcCCCe---------E---Ee---------------
Confidence 42 2356778888899998874332 333 3344455555443221 0 00
Q ss_pred cCCCCC-HHHHHHHHHhcCCCEEEEec-cCHHH--------HHcCCc-EEEEcCCCccCCCCCcchHHHHHHHHHHcCCC
Q 017781 208 IDRSLS-WKDVKWLQTITKLPILVKGV-LTAED--------VQAGAA-GIIVSNHGARQLDYVPATIMALEEVVKATQGR 276 (366)
Q Consensus 208 ~d~~~~-~~~i~~lr~~~~~pv~vK~v-~~~~d--------~~aGad-~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ 276 (366)
.....+ ...|+.+.+. +.|+|+=.. .+.++ .+.|.- .+.++....+........+..++.+++.. .
T Consensus 130 aS~E~~~~plik~iA~~-~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F--n 206 (347)
T COG2089 130 ASGEINDLPLIKYIAKK-GKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF--N 206 (347)
T ss_pred cCccccChHHHHHHHhc-CCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh--C
Confidence 012233 3457776664 679988844 45544 566654 44454432221111112345666777665 4
Q ss_pred ceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHH----HHHHHHHHHHHHHHHHHcCC
Q 017781 277 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGC 340 (366)
Q Consensus 277 i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv----~~~~~~l~~el~~~m~~~G~ 340 (366)
++|=.|.-=..-.-.+-|+++||. +|-+-|.-.....|++.. -+-+..|.+.++..-..+|.
T Consensus 207 ~~vGlSDHT~g~~a~l~AvALGA~--viEKHFtldk~~~GpD~~fSldP~efk~mv~~ir~~~~alG~ 272 (347)
T COG2089 207 AIVGLSDHTLGILAPLAAVALGAS--VIEKHFTLDKSREGPDHAFSLDPDEFKEMVDAIRQVEKALGD 272 (347)
T ss_pred CccccccCccchhHHHHHHHhccc--ceeeeeeecCCCCCCCcceecCHHHHHHHHHHHHHHHHHhCC
Confidence 555444422223334568899995 457777654444454211 01234455555555556664
No 332
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.29 E-value=0.23 Score=47.79 Aligned_cols=88 Identities=20% Similarity=0.334 Sum_probs=57.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|.+.++.|-...-... ..+++..+++.+.+++||++.=|- +-.+.++ |-.+|||++++-.|+++..
T Consensus 36 ~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y~~~- 113 (296)
T TIGR03249 36 LGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYLING- 113 (296)
T ss_pred HhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCCCCC-
Confidence 56899999998876643322222 234555566777778998887663 4555543 3348999999999987642
Q ss_pred hcCHHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLREE 330 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~e 330 (366)
.++++.+++..+.+.
T Consensus 114 --s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 114 --EQEGLYAHVEAVCES 128 (296)
T ss_pred --CHHHHHHHHHHHHhc
Confidence 356666666555443
No 333
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=94.14 E-value=0.29 Score=46.73 Aligned_cols=88 Identities=20% Similarity=0.353 Sum_probs=57.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|.+.++.|....-... ..+.+..+++.+.+++||++.=|-.+-.++++ |-.+|||+|++..|+.+..
T Consensus 29 ~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~- 107 (285)
T TIGR00674 29 IENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKP- 107 (285)
T ss_pred HHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCC-
Confidence 46799999998776643222222 23455666666777899987666556666553 3347999999999987642
Q ss_pred hcCHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLRE 329 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~ 329 (366)
.++++.+++..+.+
T Consensus 108 --~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 108 --TQEGLYQHFKAIAE 121 (285)
T ss_pred --CHHHHHHHHHHHHh
Confidence 35555555555443
No 334
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=94.10 E-value=0.53 Score=44.68 Aligned_cols=85 Identities=24% Similarity=0.270 Sum_probs=61.8
Q ss_pred CHH-HHHHHHHhcCC-CEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHH--cCCCceEEEecC
Q 017781 213 SWK-DVKWLQTITKL-PILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA--TQGRIPVFLDGG 284 (366)
Q Consensus 213 ~~~-~i~~lr~~~~~-pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~--~~~~i~vi~~GG 284 (366)
+|+ .|+++|+..+. +-+-=.+-+.++ .++|+|.|-+.|. +.+.+.++.+. ..+++-+=+|||
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm----------~~e~~~~av~~l~~~~~~~lEaSGg 242 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLGLAGRALLEASGG 242 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCC----------CHHHHHHHHHHhccCCceEEEEeCC
Confidence 564 48888887532 223234567777 9999999999884 22445555554 445788999999
Q ss_pred CCCHHHHHHHHHhCcCEEEecHHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~~ 308 (366)
| +.+.+..+-.+|.|.+.+|.+.
T Consensus 243 I-t~~ni~~yA~tGVD~IS~galt 265 (280)
T COG0157 243 I-TLENIREYAETGVDVISVGALT 265 (280)
T ss_pred C-CHHHHHHHhhcCCCEEEeCccc
Confidence 9 6788888888999999999764
No 335
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=94.09 E-value=0.27 Score=47.17 Aligned_cols=87 Identities=16% Similarity=0.245 Sum_probs=57.0
Q ss_pred HH-cCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHh
Q 017781 239 VQ-AGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~-aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l 312 (366)
.+ .|+++|.+.++.|....-... ..+++..+++.+.+++|||+.=|-.+-.|+++ |-.+|||+|++-.|+.+..
T Consensus 34 ~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~ 113 (293)
T PRK04147 34 IEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPF 113 (293)
T ss_pred HhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCC
Confidence 45 799999998877643222222 23455666677777899998666566666653 4458999999999987642
Q ss_pred hhcCHHHHHHHHHHHH
Q 017781 313 AAEGEKGVRRVLEMLR 328 (366)
Q Consensus 313 ~~~G~~gv~~~~~~l~ 328 (366)
.++++.++++.+.
T Consensus 114 ---~~~~l~~~f~~va 126 (293)
T PRK04147 114 ---SFEEICDYYREII 126 (293)
T ss_pred ---CHHHHHHHHHHHH
Confidence 2455554444443
No 336
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=94.04 E-value=0.69 Score=45.44 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
+.+.+.+.++++.+.|++++-+.++...... .....+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~-------------------------------------------~~~~~d 175 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGG-------------------------------------------EDLRED 175 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcch-------------------------------------------HHHHHH
Confidence 4666777777888899999877665321000 001224
Q ss_pred HHHHHHHHHhc--CCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTIT--KLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~--~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.++.+|+.+ +.++.+..- .+.++ .+.|+++|- +. ..+..++.+.++++.. .+||++
T Consensus 176 ~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~~~~~~~~l~~~~--~ipi~~ 245 (357)
T cd03316 176 LARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFWFE-------EP-VPPDDLEGLARLRQAT--SVPIAA 245 (357)
T ss_pred HHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCeEc-------CC-CCccCHHHHHHHHHhC--CCCEEe
Confidence 56677777776 456666642 34444 234555442 10 1122567778888776 799999
Q ss_pred ecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 282 DGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 282 ~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
+..+.+..|+.+++..| +|.|++-
T Consensus 246 dE~~~~~~~~~~~i~~~~~d~v~~k 270 (357)
T cd03316 246 GENLYTRWEFRDLLEAGAVDIIQPD 270 (357)
T ss_pred ccccccHHHHHHHHHhCCCCEEecC
Confidence 99999999999999977 8888775
No 337
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=94.00 E-value=5.9 Score=37.83 Aligned_cols=84 Identities=14% Similarity=0.011 Sum_probs=53.2
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec-----CCCCCCCHHHHhc-------cCC--CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-----s~~~~~~~e~i~~-------~~~--~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-...++-..+.+-+.+.|+-..+ |++.+.+.+|..+ ..+ .+.+.++.. .+.+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHH
Confidence 46667787544334444456778888888876543 3344566665432 222 355566542 45667
Q ss_pred HHHHHHHHHHcCCCEEEEe
Q 017781 138 VAQLVRRAERAGFKAIALT 156 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vt 156 (366)
+.++++.++++|++++++.
T Consensus 85 ~i~~a~~a~~~G~d~v~~~ 103 (292)
T PRK03170 85 AIELTKFAEKAGADGALVV 103 (292)
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 7788899999999999873
No 338
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=93.98 E-value=0.27 Score=44.57 Aligned_cols=77 Identities=27% Similarity=0.295 Sum_probs=50.6
Q ss_pred CHHHHHHHHHhc-CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 213 SWKDVKWLQTIT-KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 213 ~~~~i~~lr~~~-~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
..+.|+.+++.. ++-|.+..|.+.++ .++||++++--+ ..-+.+..+.+. ++|++ =|+.|
T Consensus 46 a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~----------~~~~v~~~~~~~---~i~~i--PG~~T 110 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG----------FDPEVIEYAREY---GIPYI--PGVMT 110 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS------------HHHHHHHHHH---TSEEE--EEESS
T ss_pred HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHHc---CCccc--CCcCC
Confidence 356788898887 44455556788887 999999996321 133444444432 56655 47999
Q ss_pred HHHHHHHHHhCcCEEEe
Q 017781 288 GTDVFKALALGASGIFI 304 (366)
Q Consensus 288 ~~dv~kalalGAd~V~i 304 (366)
+.++.+|+.+||+.|=+
T Consensus 111 ptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 111 PTEIMQALEAGADIVKL 127 (196)
T ss_dssp HHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999865
No 339
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=93.98 E-value=0.23 Score=45.27 Aligned_cols=70 Identities=14% Similarity=0.242 Sum_probs=51.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.+.|+..|-|.|+.-.......++ -..+.+-.+.++-+++-+||.|+.|++++-..|..+|.+|-.++..
T Consensus 203 leiGakvvGvNNRnL~sFeVDlst---TskL~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~ 272 (289)
T KOG4201|consen 203 LEIGAKVVGVNNRNLHSFEVDLST---TSKLLEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQ 272 (289)
T ss_pred HHhCcEEEeecCCccceeeechhh---HHHHHhhCccceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhc
Confidence 778998888877543222222222 2333344556788999999999999999999999999999998874
No 340
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=93.97 E-value=0.29 Score=46.82 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=56.2
Q ss_pred HHc-CCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHH----HHHHhCcCEEEecHHHHHHh
Q 017781 239 VQA-GAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~a-Gad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~----kalalGAd~V~igr~~l~~l 312 (366)
.+. |+++|.+.++.|....-... ..+.+..+++.+.+++|||+.=|-.+-.|++ .|-.+|||+|++-.|+.+..
T Consensus 31 ~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~ 110 (288)
T cd00954 31 IEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKF 110 (288)
T ss_pred HhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC
Confidence 457 99999998876643222222 2345555666677789998844434444444 34458999999999987642
Q ss_pred hhcCHHHHHHHHHHHHH
Q 017781 313 AAEGEKGVRRVLEMLRE 329 (366)
Q Consensus 313 ~~~G~~gv~~~~~~l~~ 329 (366)
.++++.++++.+.+
T Consensus 111 ---~~~~i~~~~~~v~~ 124 (288)
T cd00954 111 ---SFEEIKDYYREIIA 124 (288)
T ss_pred ---CHHHHHHHHHHHHH
Confidence 45666665555544
No 341
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.95 E-value=0.18 Score=51.89 Aligned_cols=244 Identities=15% Similarity=0.225 Sum_probs=127.5
Q ss_pred cccceeeeccccC-CC-CCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc
Q 017781 42 AFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (366)
Q Consensus 42 ~f~~i~l~pr~l~-~~-~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (366)
.|||+.|+|.... .. +++|++|++ +..+..||+.|||...+ +..||.+.++.|...++.. +.+.++..+
T Consensus 14 tfddvll~p~~~~~~~~~~v~~~t~~-~~~l~~Pi~sa~Mdtvt------~~~MAiaLAr~GGiGvih~--nl~~~~q~~ 84 (479)
T PRK07807 14 TYDDVFLVPSRSDVGSRFDVDLSTAD-GTGTTIPLVVANMTAVA------GRRMAETVARRGGLVVLPQ--DIPIDVVAE 84 (479)
T ss_pred CccceEecccccCccCCCceecccCC-CCccccceeecCCcchh------HHHHHHHHHHCCCceEeeC--CCCHHHHHH
Confidence 5999999998764 44 489999974 88999999999996543 7899999999998777753 445544332
Q ss_pred cC---C-CceEE-EeeecCCHHHHHHHHHHHHHcCCCEEEEecCCC-CCc-chhHHHhhhcCCCCccccccccccccCCC
Q 017781 120 TG---P-GIRFF-QLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP-RLG-RREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (366)
Q Consensus 120 ~~---~-~~~~~-Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p-~~g-~r~~d~~~~~~~p~~~~~~~~~~~~~~~~ 192 (366)
.. . ..... +...-.......+.++...+.++..+.|.-+.- ..| --.+|++.. +.......+.......+
T Consensus 85 ~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~---~~~~~V~diMt~~~itV 161 (479)
T PRK07807 85 VVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV---DRFTQVRDVMSTDLVTL 161 (479)
T ss_pred HHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC---ccCCCHHHhccCCceEE
Confidence 11 1 00000 000011222345566666677777766642210 001 112233210 00000000000000000
Q ss_pred cc-ccchhhHHHhhh-------ccC------CCCCHHHHHHHHHhcCCCE-------EEEec--cCHH--H-----HHcC
Q 017781 193 DE-ANDSGLAAYVAG-------QID------RSLSWKDVKWLQTITKLPI-------LVKGV--LTAE--D-----VQAG 242 (366)
Q Consensus 193 ~~-~~~~~~~~~~~~-------~~d------~~~~~~~i~~lr~~~~~pv-------~vK~v--~~~~--d-----~~aG 242 (366)
.. .........+.. -.| .-.+..+|...... + |. .+... .+.+ + .++|
T Consensus 162 ~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~-~-~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aG 239 (479)
T PRK07807 162 PAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIY-T-PAVDAAGRLRVAAAVGINGDVAAKARALLEAG 239 (479)
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC-C-chhhhhhccchHhhhccChhHHHHHHHHHHhC
Confidence 00 000000000000 000 01123333222221 1 11 11100 1111 1 8899
Q ss_pred CcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 243 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 243 ad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
+|.|++....|. +...++.+++|++..+ +++||+ |.|.|.+.+..++.+|||+|-+|
T Consensus 240 vd~i~~D~a~~~----~~~~~~~i~~ik~~~p-~~~v~a-gnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 240 VDVLVVDTAHGH----QEKMLEALRAVRALDP-GVPIVA-GNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred CCEEEEeccCCc----cHHHHHHHHHHHHHCC-CCeEEe-eccCCHHHHHHHHHcCCCEEEEC
Confidence 999999865443 4567788999988764 577776 89999999999999999998744
No 342
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.92 E-value=3.1 Score=41.10 Aligned_cols=210 Identities=16% Similarity=0.135 Sum_probs=104.4
Q ss_pred eeEcC-cccCCceEecccccccccCChh---h--HHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHH
Q 017781 63 TTVLG-FKISMPIMIAPTAMQKMAHPEG---E--YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRN 136 (366)
Q Consensus 63 t~l~g-~~l~~Pi~iApm~~~~l~~~~~---e--~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~ 136 (366)
.+|.+ .++++-|++|||+.. ....+| + ...-+.-++ |+++++.+....+.+. ...+ ...-++.....+
T Consensus 5 ~~ig~g~~lkNRiv~apm~~~-~~~~~G~~t~~~~~yy~~rA~-g~glIi~e~~~v~~~~--~~~~--~~~~~~~d~~i~ 78 (353)
T cd04735 5 FTLKNGVTLKNRFVMAPMTTY-SSNPDGTITDDELAYYQRRAG-GVGMVITGATYVSPSG--IGFE--GGFSADDDSDIP 78 (353)
T ss_pred EEcCCCeEEeCcceecccccC-ccCCCCCCCHHHHHHHHHHhC-CCCEEEECceEECccc--CcCC--CCceecChhhhH
Confidence 46776 999999999999632 232333 2 222222222 4666665543322111 1111 112233333456
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcchhHH-HhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHH
Q 017781 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREAD-IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (366)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (366)
..+++.+.+.+.|++.+ +-+..+ |..... ...+ ..| +.... +. . ..........++.+
T Consensus 79 ~~~~l~~~vh~~G~~i~-~QL~h~--G~~~~~~~~~~-~~~--~~ps~--------~~--~-----~~~~~~~p~~mt~~ 137 (353)
T cd04735 79 GLRKLAQAIKSKGAKAI-LQIFHA--GRMANPALVPG-GDV--VSPSA--------IA--A-----FRPGAHTPRELTHE 137 (353)
T ss_pred HHHHHHHHHHhCCCeEE-EEecCC--CCCCCccccCC-Cce--ecCCC--------Cc--c-----cCCCCCCCccCCHH
Confidence 67888889999998754 444432 211100 0000 000 00000 00 0 00000012346778
Q ss_pred HHHHHHHhcCCCEEEEeccCHHH-HHcCCcEEEEcC-CCcc--C----------C-CCCc------chHHHHHHHHHHcC
Q 017781 216 DVKWLQTITKLPILVKGVLTAED-VQAGAAGIIVSN-HGAR--Q----------L-DYVP------ATIMALEEVVKATQ 274 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~~~~d-~~aGad~I~vs~-~gg~--~----------~-~~~~------~~~~~l~~i~~~~~ 274 (366)
+|+++.+.+- ..... .++|+|+|.++. ||.- | - .+|- -..+.+..++++++
T Consensus 138 eI~~ii~~f~--------~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg 209 (353)
T cd04735 138 EIEDIIDAFG--------EATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVID 209 (353)
T ss_pred HHHHHHHHHH--------HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhc
Confidence 8888877642 01122 789999999975 4320 1 1 1221 13466777777775
Q ss_pred ----CCceEEE--------ecCCC--CHHHHHHHHH-hCcCEEEecHH
Q 017781 275 ----GRIPVFL--------DGGVR--RGTDVFKALA-LGASGIFIGRP 307 (366)
Q Consensus 275 ----~~i~vi~--------~GGI~--~~~dv~kala-lGAd~V~igr~ 307 (366)
.+++|.. .||+. ...++++.|. +|+|.+-+...
T Consensus 210 ~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g 257 (353)
T cd04735 210 KHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLW 257 (353)
T ss_pred cccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccC
Confidence 4555443 45654 2335567775 79999998753
No 343
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.91 E-value=0.18 Score=52.18 Aligned_cols=246 Identities=17% Similarity=0.171 Sum_probs=124.7
Q ss_pred hcccceeeeccccC---CCCCCccceeEc--------CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCC
Q 017781 41 NAFSRILFRPRILI---DVSKIDMNTTVL--------GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW 109 (366)
Q Consensus 41 ~~f~~i~l~pr~l~---~~~~vd~st~l~--------g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~ 109 (366)
-.|||+.|+|.... ..+++|++|.+- +.++..|+..|+|.... +-+||.+..+.|-..++..
T Consensus 10 ~tfddvll~P~~~~~~~~~~~v~~~t~~~~~~~~~~~~i~l~iP~~Satmdtvt------gdalAiala~~gG~g~Ih~- 82 (502)
T PRK07107 10 RTFSEYLLVPGLSSKECVPANVSLKTPLVKFKKGEESAITLNIPLVSAIMQSVS------DDNMAIALAREGGLSFIFG- 82 (502)
T ss_pred ccccceEEccCCCCCCcCccceeccccccccccCcccccccCCChHHHHHHHHh------hHHHHHHHHHcCCCeEeeC-
Confidence 46999999998763 457899998875 45688899999985432 6689999999887777642
Q ss_pred CCCCHHHHhcc-------C----CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCC----CCCc-chhHHHhhhc
Q 017781 110 STSSVEEVAST-------G----PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT----PRLG-RREADIKNRF 173 (366)
Q Consensus 110 ~~~~~e~i~~~-------~----~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~----p~~g-~r~~d~~~~~ 173 (366)
++++|+-++. . ..+. .+. ....+.+.++...+.+...+.|.=+. -..| --.+|++...
T Consensus 83 -n~sie~qa~lV~kVk~~~~g~i~~~~--tV~---pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~ 156 (502)
T PRK07107 83 -SQSIESEAAMVRRVKNYKAGFVVSDS--NLT---PDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR 156 (502)
T ss_pred -CCCHHHHHHHHHHHHHHhcCCcCCCC--EeC---CCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc
Confidence 3455543221 1 0121 122 22334556666666677666654220 0000 0123332100
Q ss_pred CCCCccccccccccccCCC--c-cccchhhHHHhhh-------ccC------CCCCHHHHHHHH-------HhcCCCEEE
Q 017781 174 TLPPFLTLKNFQGLDLGKM--D-EANDSGLAAYVAG-------QID------RSLSWKDVKWLQ-------TITKLPILV 230 (366)
Q Consensus 174 ~~p~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~-------~~d------~~~~~~~i~~lr-------~~~~~pv~v 230 (366)
..+. .....+.......+ . ........+.+.. -.| .-.+++++...+ +.-+-.++.
T Consensus 157 ~~~~-~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~ 235 (502)
T PRK07107 157 MSLD-TKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVG 235 (502)
T ss_pred cCCC-CCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeee
Confidence 0000 00000000000000 0 0000000000000 000 011333332221 111112222
Q ss_pred EeccCHH--H-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEE
Q 017781 231 KGVLTAE--D-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 303 (366)
Q Consensus 231 K~v~~~~--d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ 303 (366)
..+...+ + .++|+|.|+|.+..|. ..-.++.+.++++..+++++|+ .|-|-+++++..++.+|||++-
T Consensus 236 ~av~~~~~~~ra~~Lv~aGvd~i~vd~a~g~----~~~~~~~i~~ir~~~~~~~~V~-aGnV~t~e~a~~li~aGAd~I~ 310 (502)
T PRK07107 236 AGINTRDYAERVPALVEAGADVLCIDSSEGY----SEWQKRTLDWIREKYGDSVKVG-AGNVVDREGFRYLAEAGADFVK 310 (502)
T ss_pred eccChhhHHHHHHHHHHhCCCeEeecCcccc----cHHHHHHHHHHHHhCCCCceEE-eccccCHHHHHHHHHcCCCEEE
Confidence 2332112 1 8899999998753332 1224678888888765345444 4889999999999999999998
Q ss_pred ec
Q 017781 304 IG 305 (366)
Q Consensus 304 ig 305 (366)
+|
T Consensus 311 vg 312 (502)
T PRK07107 311 VG 312 (502)
T ss_pred EC
Confidence 74
No 344
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.91 E-value=1.6 Score=42.77 Aligned_cols=211 Identities=17% Similarity=0.150 Sum_probs=104.6
Q ss_pred eeEc-CcccCCceEecccccccccCChh-----hHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEE--eeecCC
Q 017781 63 TTVL-GFKISMPIMIAPTAMQKMAHPEG-----EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQ--LYVYKD 134 (366)
Q Consensus 63 t~l~-g~~l~~Pi~iApm~~~~l~~~~~-----e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Q--ly~~~d 134 (366)
.+|. |+++++-|+++||+.. ..+.++ ..+.-..-++-|+++++.+......+. ...+. ...| +|-...
T Consensus 5 ~~i~~~~~lkNRi~~~p~~~~-~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~--~~~~~-~~~~~~~~~d~~ 80 (338)
T cd04733 5 LTLPNGATLPNRLAKAAMSER-LADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRH--LEEPG-IIGNVVLESGED 80 (338)
T ss_pred eEcCCCcEEcccceecccccc-cccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECccc--ccCCC-cCCCcccCCHHH
Confidence 4677 4999999999999632 222332 234444444457888765543322111 11110 0012 232222
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCH
Q 017781 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 214 (366)
Q Consensus 135 ~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 214 (366)
-...+++.+.+++.|++.++ -+.. .|.+...-... .|...+ .+.. .. .. .. .......++.
T Consensus 81 i~~~~~l~~~vh~~G~~~~~-Ql~h--~G~~~~~~~~~--~~~~ps----------~~~~-~~-~~-~~-~~~~p~~mt~ 141 (338)
T cd04733 81 LEAFREWAAAAKANGALIWA-QLNH--PGRQSPAGLNQ--NPVAPS----------VALD-PG-GL-GK-LFGKPRAMTE 141 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEE-EccC--CCcCCCccCCC--CCcCCC----------CCcC-cc-cc-cc-cCCCCCcCCH
Confidence 34567777888889987643 3332 23221100000 000000 0000 00 00 00 0001124577
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH-HHcCCcEEEEcCCCcc---C----------CCCCcc-------hHHHHHHHHHHc
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED-VQAGAAGIIVSNHGAR---Q----------LDYVPA-------TIMALEEVVKAT 273 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d-~~aGad~I~vs~~gg~---~----------~~~~~~-------~~~~l~~i~~~~ 273 (366)
++|+++.+.+- ..... .++|.|+|.++...|. | -.+|-+ ..+.+.+|++++
T Consensus 142 ~eI~~~i~~~~--------~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~av 213 (338)
T cd04733 142 EEIEDVIDRFA--------HAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAV 213 (338)
T ss_pred HHHHHHHHHHH--------HHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHc
Confidence 77777777542 01112 8899999999753332 1 112211 356788888888
Q ss_pred CCCceEEEe--------cCCCCHH---HHHHHHH-hCcCEEEec
Q 017781 274 QGRIPVFLD--------GGVRRGT---DVFKALA-LGASGIFIG 305 (366)
Q Consensus 274 ~~~i~vi~~--------GGI~~~~---dv~kala-lGAd~V~ig 305 (366)
+++++|.+. +|. +.+ ++++.|+ +|.|.+-+.
T Consensus 214 G~d~~v~vris~~~~~~~g~-~~eea~~ia~~Le~~Gvd~iev~ 256 (338)
T cd04733 214 GPGFPVGIKLNSADFQRGGF-TEEDALEVVEALEEAGVDLVELS 256 (338)
T ss_pred CCCCeEEEEEcHHHcCCCCC-CHHHHHHHHHHHHHcCCCEEEec
Confidence 777777653 454 444 4566665 699998764
No 345
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=93.86 E-value=0.49 Score=46.52 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=48.4
Q ss_pred eeEcCcccCCceEecccccccccCChh------hHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHH
Q 017781 63 TTVLGFKISMPIMIAPTAMQKMAHPEG------EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRN 136 (366)
Q Consensus 63 t~l~g~~l~~Pi~iApm~~~~l~~~~~------e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~ 136 (366)
.+|.+.++++-|++|||+.. ...+++ ....-+.-++-|+++++.+....+.+-. ..+.. .-++....-+
T Consensus 6 ~~ig~~~lkNRiv~apm~~~-~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~--~~~~~--~~i~~d~~i~ 80 (341)
T PF00724_consen 6 LKIGNLTLKNRIVMAPMTTN-MADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGR--GFPGQ--PGIWDDEQIP 80 (341)
T ss_dssp EEETTEEESSSEEE----SS-TSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGS--SSTTS--EBSSSHHHHH
T ss_pred eeECCEEecCCeEECCCCCC-CcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccc--ccccc--chhchhhHHH
Confidence 57888999999999999643 333443 2455556667788888866544332211 12211 1122222234
Q ss_pred HHHHHHHHHHHcCCCEEE
Q 017781 137 VVAQLVRRAERAGFKAIA 154 (366)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~ 154 (366)
..+++++.+++.|++.++
T Consensus 81 ~~k~l~~~vh~~Ga~i~~ 98 (341)
T PF00724_consen 81 GLKKLADAVHAHGAKIIA 98 (341)
T ss_dssp HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCcccee
Confidence 567777888889988754
No 346
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=93.85 E-value=1.3 Score=40.90 Aligned_cols=121 Identities=18% Similarity=0.327 Sum_probs=72.7
Q ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
|...+.+.+.+-++.++++|++++++..-.+ |
T Consensus 67 Y~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~------------------------------------------------d 98 (241)
T COG3142 67 YSDDELEIMLEDIRLARELGVQGVVLGALTA------------------------------------------------D 98 (241)
T ss_pred cChHHHHHHHHHHHHHHHcCCCcEEEeeecC------------------------------------------------C
Confidence 4344556789999999999999998754322 2
Q ss_pred CCCCHHHHHHHHHhc-CCCEEEEec----cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE
Q 017781 210 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~-~~pv~vK~v----~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 279 (366)
...+.+.++.+.+.. +++|.+--. .++.+ .+.|+.-|--| ||. ....-.++.|.++.+...+++.|
T Consensus 99 g~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTs--Gg~--~sa~eg~~~l~~li~~a~gri~I 174 (241)
T COG3142 99 GNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTS--GGK--ASALEGLDLLKRLIEQAKGRIII 174 (241)
T ss_pred CccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecC--CCc--CchhhhHHHHHHHHHHhcCCEEE
Confidence 233444555555544 344444322 23332 88888877644 442 22233445566666665678888
Q ss_pred EEecCCCCHHHHHHH-HHhCcCEEE
Q 017781 280 FLDGGVRRGTDVFKA-LALGASGIF 303 (366)
Q Consensus 280 i~~GGI~~~~dv~ka-lalGAd~V~ 303 (366)
++-|||+ ++.+... ...|+.-+-
T Consensus 175 m~GaGV~-~~N~~~l~~~tg~~e~H 198 (241)
T COG3142 175 MAGAGVR-AENIAELVLLTGVTEVH 198 (241)
T ss_pred EeCCCCC-HHHHHHHHHhcCchhhh
Confidence 8888885 5555555 557765443
No 347
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=93.85 E-value=0.2 Score=46.16 Aligned_cols=65 Identities=18% Similarity=0.145 Sum_probs=48.2
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHH--hCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA--LGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kala--lGAd~V~igr~~l 309 (366)
.+.|+|.+++--=-+. .+.+...+.+.++.+. +|+.+.||||+.+|+.+++. .||+-|.+|+..+
T Consensus 46 ~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 46 EEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 5568888876432221 1344577888888764 48999999999999999876 2799999999754
No 348
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=93.83 E-value=2.5 Score=42.12 Aligned_cols=214 Identities=14% Similarity=0.031 Sum_probs=102.0
Q ss_pred ceeEcCcccCCceEecccccccc-cCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHHHHHH
Q 017781 62 NTTVLGFKISMPIMIAPTAMQKM-AHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQ 140 (366)
Q Consensus 62 st~l~g~~l~~Pi~iApm~~~~l-~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~~~~~ 140 (366)
..+|.++++++-|++|||+...- ..++-....-..-++-|+++++.+....+.+. ...+. .-..+|....-+..++
T Consensus 11 P~~ig~~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~--~~~~~-~~~~l~~d~~i~~~~~ 87 (370)
T cd02929 11 PIKIGPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSS--DDTPR-ISARLWDDGDIRNLAA 87 (370)
T ss_pred CccCCCEEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEcccc--ccCcc-cCcCcCCHHHHHHHHH
Confidence 35677899999999999953221 11211112222234567888776543332111 01110 0122332223445677
Q ss_pred HHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHH
Q 017781 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 220 (366)
Q Consensus 141 ~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~l 220 (366)
+++.+++.|++.+ +-+.. .|.+......+. .|. .... +.. ... .........++.++|+++
T Consensus 88 l~~~vh~~G~~i~-~QL~H--~G~~~~~~~~~~-~~~--~ps~--------~~~-~~~----~~~~~~p~~mt~~eI~~i 148 (370)
T cd02929 88 MTDAVHKHGALAG-IELWH--GGAHAPNRESRE-TPL--GPSQ--------LPS-EFP----TGGPVQAREMDKDDIKRV 148 (370)
T ss_pred HHHHHHHCCCeEE-Eeccc--CCCCCCccCCCC-Ccc--CCCC--------CCC-Ccc----ccCCCCCccCCHHHHHHH
Confidence 7788888888754 33332 232211000000 000 0000 000 000 000001234677888888
Q ss_pred HHhcCCCEEEEeccCHHH-HHcCCcEEEEcCCCcc---C----------CCCCc-------chHHHHHHHHHHcCCCceE
Q 017781 221 QTITKLPILVKGVLTAED-VQAGAAGIIVSNHGAR---Q----------LDYVP-------ATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 221 r~~~~~pv~vK~v~~~~d-~~aGad~I~vs~~gg~---~----------~~~~~-------~~~~~l~~i~~~~~~~i~v 279 (366)
.+.+. ..... .++|+|+|.++...|. | -.+|- -..+.+..|++.++.+++|
T Consensus 149 i~~f~--------~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v 220 (370)
T cd02929 149 RRWYV--------DAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAV 220 (370)
T ss_pred HHHHH--------HHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceE
Confidence 77642 01122 8899999999753332 1 11221 2356777788877656665
Q ss_pred EE---------ecCCCCHH---HHHHHHHhCcCEEEec
Q 017781 280 FL---------DGGVRRGT---DVFKALALGASGIFIG 305 (366)
Q Consensus 280 i~---------~GGI~~~~---dv~kalalGAd~V~ig 305 (366)
.+ .||..+.+ ++++.|+-..|++-+.
T Consensus 221 ~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs 258 (370)
T cd02929 221 ATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVN 258 (370)
T ss_pred EEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEec
Confidence 44 12223444 4556666556776554
No 349
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=93.68 E-value=0.26 Score=46.22 Aligned_cols=64 Identities=25% Similarity=0.326 Sum_probs=50.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
.++||++|.|-.-+. +-...++.|..+++.+ ++||+.-..|-+..++..+.++|||+|.+=-.+
T Consensus 71 ~~~GA~aISVlTe~~----~F~Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~ 134 (247)
T PRK13957 71 ETLGASAISVLTDQS----YFGGSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRI 134 (247)
T ss_pred HHCCCcEEEEEcCCC----cCCCCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhh
Confidence 788999998765321 1113567888888887 899999999999999999999999999765444
No 350
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=93.60 E-value=0.26 Score=47.13 Aligned_cols=87 Identities=21% Similarity=0.355 Sum_probs=54.5
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|++.+.++.|-...-... ..+.+..+++.+++++|||+.=|=.+-.++++ |-.+|||++++..|+.+..
T Consensus 32 ~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~- 110 (289)
T PF00701_consen 32 IEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKP- 110 (289)
T ss_dssp HHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSC-
T ss_pred HHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccc-
Confidence 56799999998876643222222 23445555666777899888656556666553 3348999999999986642
Q ss_pred hcCHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLR 328 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~ 328 (366)
.++++.++++.+.
T Consensus 111 --s~~~l~~y~~~ia 123 (289)
T PF00701_consen 111 --SQEELIDYFRAIA 123 (289)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred --hhhHHHHHHHHHH
Confidence 3455555554443
No 351
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=93.59 E-value=5.8 Score=38.27 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=42.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceE---EEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV---FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v---i~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
.++|||+|.+.+ +.+.+.+.++.+.++ .|+ +..||-.-...+...-++|.+.|..+...+++
T Consensus 175 ~eAGAD~ifi~~---------~~~~~ei~~~~~~~~--~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~a 239 (294)
T TIGR02319 175 VAAGADCIFLEA---------MLDVEEMKRVRDEID--APLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMA 239 (294)
T ss_pred HHhCCCEEEecC---------CCCHHHHHHHHHhcC--CCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHHH
Confidence 899999998732 345677778888774 444 44444322234555556899999999877765
No 352
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=93.54 E-value=0.43 Score=45.44 Aligned_cols=88 Identities=20% Similarity=0.374 Sum_probs=55.9
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|.+.++.|....-... ..+.+..+++.+.+++||++.=|-.+..++++ |-.+|||+|++..|+.+..
T Consensus 31 ~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~- 109 (284)
T cd00950 31 IENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKP- 109 (284)
T ss_pred HHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCC-
Confidence 46799999998776643222222 23445556666667889876555455666654 3448999999999987642
Q ss_pred hcCHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLRE 329 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~ 329 (366)
.++++.++++.+.+
T Consensus 110 --~~~~l~~~~~~ia~ 123 (284)
T cd00950 110 --SQEGLYAHFKAIAE 123 (284)
T ss_pred --CHHHHHHHHHHHHh
Confidence 34555555555544
No 353
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=93.52 E-value=0.71 Score=45.43 Aligned_cols=68 Identities=24% Similarity=0.279 Sum_probs=41.1
Q ss_pred HcCCcEEEEcCCCc----cCCC------CCcchHHHHHHHHHHcCCCceEEE-ecCCCCHHHHHH----HHHhCc--CEE
Q 017781 240 QAGAAGIIVSNHGA----RQLD------YVPATIMALEEVVKATQGRIPVFL-DGGVRRGTDVFK----ALALGA--SGI 302 (366)
Q Consensus 240 ~aGad~I~vs~~gg----~~~~------~~~~~~~~l~~i~~~~~~~i~vi~-~GGI~~~~dv~k----alalGA--d~V 302 (366)
+.|+|.+.+---+. -..+ ......+.+.++.+.. .+|+++ +||. +.+++.+ |+..|| .+|
T Consensus 197 elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f~~~l~~A~~aGa~f~Gv 273 (340)
T PRK12858 197 RYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELFRRTLEFACEAGADFSGV 273 (340)
T ss_pred ccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHHHHHHHHHHHcCCCccch
Confidence 59999999742210 0001 1111224456666555 677555 7776 6676665 455799 999
Q ss_pred EecHHHHH
Q 017781 303 FIGRPVVY 310 (366)
Q Consensus 303 ~igr~~l~ 310 (366)
.+||....
T Consensus 274 l~GRniwq 281 (340)
T PRK12858 274 LCGRATWQ 281 (340)
T ss_pred hhhHHHHh
Confidence 99998744
No 354
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=93.51 E-value=1.7 Score=42.11 Aligned_cols=101 Identities=19% Similarity=0.164 Sum_probs=70.0
Q ss_pred HHcCCcEEEEcC---CCccCCCCC-cchHHHHHHHHHHcCCCceEEEecCCCCHH----------------------HHH
Q 017781 239 VQAGAAGIIVSN---HGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGT----------------------DVF 292 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~-~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~----------------------dv~ 292 (366)
.+.|+|.+-++. ||-+...+. .-.++.|.+|++.+ ++|+..=||=..+. ++.
T Consensus 165 ~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~ 242 (307)
T PRK05835 165 KESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQ 242 (307)
T ss_pred HhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHH
Confidence 567999998874 443211111 23678999999988 89999999877666 799
Q ss_pred HHHHhCcCEEEecHHHHHHhhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 293 KALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 293 kalalGAd~V~igr~~l~~l~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
||+.+|..-|-+++-+..+... .. ..-.....+.+++..+..|+.+|+.
T Consensus 243 kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 304 (307)
T PRK05835 243 ESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_pred HHHHcCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999977554211 00 1223344566777777888888764
No 355
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=93.51 E-value=0.36 Score=46.84 Aligned_cols=86 Identities=22% Similarity=0.389 Sum_probs=54.8
Q ss_pred cCCCceEEEeeecCC--HHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccc
Q 017781 120 TGPGIRFFQLYVYKD--RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAND 197 (366)
Q Consensus 120 ~~~~~~~~Qly~~~d--~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 197 (366)
..+.|..+.+-.+.+ .+.+.+++++++++|++.|.||--++.. .
T Consensus 120 ~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q---------~------------------------- 165 (309)
T PF01207_consen 120 AVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQ---------R------------------------- 165 (309)
T ss_dssp H-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTC---------C-------------------------
T ss_pred ccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhh---------c-------------------------
Confidence 334566666655544 6778899999999999999887533211 0
Q ss_pred hhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEEe-ccCHHH-----HHcCCcEEEEc
Q 017781 198 SGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAED-----VQAGAAGIIVS 249 (366)
Q Consensus 198 ~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~-v~~~~d-----~~aGad~I~vs 249 (366)
......|+.++++++..++||+.=| +.+.+| ...|+|+|-+.
T Consensus 166 ----------~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 166 ----------YKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp ----------CTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred ----------CCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 1224589999999999999999886 578887 45599999773
No 356
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=93.48 E-value=0.7 Score=42.17 Aligned_cols=76 Identities=25% Similarity=0.271 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCC--EEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 214 WKDVKWLQTITKLP--ILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 214 ~~~i~~lr~~~~~p--v~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
.+.++.+++.++.+ |.+..+++.++ .++|+|+++..+ ...+.+ +.+... .++++. | +.|
T Consensus 49 ~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~----------~~~~v~-~~~~~~--~~~~~~-G-~~t 113 (206)
T PRK09140 49 FDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN----------TDPEVI-RRAVAL--GMVVMP-G-VAT 113 (206)
T ss_pred HHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC----------CCHHHH-HHHHHC--CCcEEc-c-cCC
Confidence 35689999888544 44445677776 999999996422 122222 222222 455544 3 999
Q ss_pred HHHHHHHHHhCcCEEEe
Q 017781 288 GTDVFKALALGASGIFI 304 (366)
Q Consensus 288 ~~dv~kalalGAd~V~i 304 (366)
.+++.+|..+|||.|.+
T Consensus 114 ~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 114 PTEAFAALRAGAQALKL 130 (206)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999997
No 357
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=93.36 E-value=0.28 Score=50.52 Aligned_cols=242 Identities=16% Similarity=0.222 Sum_probs=128.9
Q ss_pred hcccceeeeccccC-CC-CCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHh
Q 017781 41 NAFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (366)
Q Consensus 41 ~~f~~i~l~pr~l~-~~-~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~ 118 (366)
-.|||+.|+|.... .. +++|++|.+ ..++..||+.|||--.+ |..||.+.++.|...++.. ++++++..
T Consensus 12 ltfddvll~p~~~~~~~~~~v~~~t~~-~~~l~~P~vsa~mdtvT------e~~MAi~~A~~GGigvIh~--n~~i~~qa 82 (475)
T TIGR01303 12 LTYNDVFMVPSRSEVGSRFDVDLSTAD-GTGTTIPLVVANMTAVA------GRRMAETVARRGGIVILPQ--DLPIPAVK 82 (475)
T ss_pred CCccceEEccCccCccCCCceeecccc-cCccccceeeccchhhH------HHHHHHHHHHCCCEEEEeC--CCCHHHHH
Confidence 36999999998763 34 489999884 57999999999995433 8899999999999999854 56676554
Q ss_pred ccC---C-Cc----eEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCc-chhHHHhhhcCCCCcccccccccccc
Q 017781 119 STG---P-GI----RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG-RREADIKNRFTLPPFLTLKNFQGLDL 189 (366)
Q Consensus 119 ~~~---~-~~----~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g-~r~~d~~~~~~~p~~~~~~~~~~~~~ 189 (366)
+.- . .. ..+.+.+ .....+.++...+.+...++|.-+.-..| --.+|++.. +.......+.....
T Consensus 83 e~v~~VKv~eim~~~pvtv~p---~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~---~~~~~V~dIMt~~l 156 (475)
T TIGR01303 83 QTVAFVKSRDLVLDTPITLAP---HDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV---DRFTQVRDIMSTDL 156 (475)
T ss_pred HHHhhcchhhccccCCeEECC---CCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC---CCCCCHHHHccCCc
Confidence 321 0 00 1112221 22345556666666766655432210001 112232210 00000000000000
Q ss_pred CCCcc-ccchhhHHHhhh-------ccC------CCCCHHHHHHHHHhcCCCE-------EEE---ecc-CHHH-----H
Q 017781 190 GKMDE-ANDSGLAAYVAG-------QID------RSLSWKDVKWLQTITKLPI-------LVK---GVL-TAED-----V 239 (366)
Q Consensus 190 ~~~~~-~~~~~~~~~~~~-------~~d------~~~~~~~i~~lr~~~~~pv-------~vK---~v~-~~~d-----~ 239 (366)
..+.. .........+.. ..+ .-.+..++-..+.. + |. .+. ++. ...+ .
T Consensus 157 itv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~-~-~~~d~~grl~Vgaav~~~~~~~~ra~~Lv 234 (475)
T TIGR01303 157 VTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY-T-PATDAAGRLRIGAAVGINGDVGGKAKALL 234 (475)
T ss_pred eEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC-C-chhhhccCceehheeeeCccHHHHHHHHH
Confidence 00000 000000000000 000 01133333222221 1 11 111 110 1111 8
Q ss_pred HcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 240 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 240 ~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
++|+|.|++....|+. ....+.+++|++..+ ++|||+ |-+.|.+.+..++.+|||+|-+|
T Consensus 235 ~aGVd~i~~D~a~g~~----~~~~~~i~~i~~~~~-~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 235 DAGVDVLVIDTAHGHQ----VKMISAIKAVRALDL-GVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HhCCCEEEEeCCCCCc----HHHHHHHHHHHHHCC-CCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 8999999998654542 456678888887653 689999 77999999999999999998765
No 358
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=93.34 E-value=1.8 Score=40.66 Aligned_cols=42 Identities=29% Similarity=0.443 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhC-cCEEEec
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalG-Ad~V~ig 305 (366)
.++.+.++++.. .+||++++.+.+..|+.+++..+ +|.|++-
T Consensus 168 d~~~~~~l~~~~--~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 168 DLEGRAALARAT--DTPIMADESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred cHHHHHHHHhhC--CCCEEECCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 467777888776 79999999999999999999876 7988885
No 359
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=93.33 E-value=0.14 Score=47.29 Aligned_cols=46 Identities=22% Similarity=0.432 Sum_probs=35.6
Q ss_pred cchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 260 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 260 ~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
|...+.++.+. ...++|.-||||+++.+.+...+|||.+.+|+.+-
T Consensus 179 Pv~~e~v~~v~----~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iie 224 (240)
T COG1646 179 PVPVEMVSRVL----SDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIE 224 (240)
T ss_pred CcCHHHHHHhh----ccceEEEcCCcCCHHHHHHHHHcCCCEEEECceee
Confidence 44445554333 24599999999999999988889999999998653
No 360
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=93.23 E-value=0.63 Score=43.27 Aligned_cols=38 Identities=21% Similarity=0.137 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHhcC-CCEEEEe-ccCHHH----HHcCCcEEEEc
Q 017781 212 LSWKDVKWLQTITK-LPILVKG-VLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 212 ~~~~~i~~lr~~~~-~pv~vK~-v~~~~d----~~aGad~I~vs 249 (366)
..|+.|+.+++.++ +|||.=| +.+.+| .++|||+|.+.
T Consensus 177 a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 177 ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 47999999999984 8977664 578888 77999999874
No 361
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=93.22 E-value=1.1 Score=44.00 Aligned_cols=86 Identities=19% Similarity=0.357 Sum_probs=62.6
Q ss_pred CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhH
Q 017781 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (366)
Q Consensus 122 ~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (366)
+.|....+-...|.+.+.+.++.++++|++.+.|+- |.++.+-
T Consensus 141 ~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHG-------Rtr~~kg------------------------------ 183 (358)
T KOG2335|consen 141 NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHG-------RTREQKG------------------------------ 183 (358)
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEec-------ccHHhcC------------------------------
Confidence 345666666678888888999999999999887752 2222110
Q ss_pred HHhhhccCCCCCHHHHHHHHHhcC-CCEEEEe-ccCHHH-----HHcCCcEEEEc
Q 017781 202 AYVAGQIDRSLSWKDVKWLQTITK-LPILVKG-VLTAED-----VQAGAAGIIVS 249 (366)
Q Consensus 202 ~~~~~~~d~~~~~~~i~~lr~~~~-~pv~vK~-v~~~~d-----~~aGad~I~vs 249 (366)
...+..+|+.|+.+|+... +||++-| +.+.+| ...|+|||-+.
T Consensus 184 -----~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 184 -----LKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred -----CCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 0134579999999999997 9999986 467776 55999999653
No 362
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.06 E-value=0.65 Score=43.45 Aligned_cols=92 Identities=23% Similarity=0.360 Sum_probs=53.2
Q ss_pred HHHHHHHhcCCCEEEEecc---CHHH--------HHcCCcEEEE--------cCCCc-cCCCCCcchHHHHHHHHHHcCC
Q 017781 216 DVKWLQTITKLPILVKGVL---TAED--------VQAGAAGIIV--------SNHGA-RQLDYVPATIMALEEVVKATQG 275 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~---~~~d--------~~aGad~I~v--------s~~gg-~~~~~~~~~~~~l~~i~~~~~~ 275 (366)
.++.+...+.+||++-+-. +.++ .++|+++|.+ .+|.| ..+-.--...+.|..++++..+
T Consensus 60 ~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~ 139 (243)
T cd00377 60 AVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDD 139 (243)
T ss_pred HHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhc
Confidence 4666667678998877433 4333 7899999998 23221 1110001122344444444444
Q ss_pred --CceEEEe--------cCCCCHHHHHHHH-HhCcCEEEecHH
Q 017781 276 --RIPVFLD--------GGVRRGTDVFKAL-ALGASGIFIGRP 307 (366)
Q Consensus 276 --~i~vi~~--------GGI~~~~dv~kal-alGAd~V~igr~ 307 (366)
+++|++= .|+...-.-+++. .+|||+|++-.+
T Consensus 140 ~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 140 LPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred cCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 6888876 3444444444444 489999999754
No 363
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=92.94 E-value=0.55 Score=44.93 Aligned_cols=88 Identities=20% Similarity=0.367 Sum_probs=55.5
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|.+.++.|....-... ..+.+..+++.+.+++||++.=|=.+-.++++ |-.+|||+|++..|+++..
T Consensus 32 ~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~- 110 (292)
T PRK03170 32 IANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKP- 110 (292)
T ss_pred HHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCC-
Confidence 45799999987766643222322 23455666677777899876444444555543 2347999999999987642
Q ss_pred hcCHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLRE 329 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~ 329 (366)
.++++.++++.+.+
T Consensus 111 --~~~~i~~~~~~ia~ 124 (292)
T PRK03170 111 --TQEGLYQHFKAIAE 124 (292)
T ss_pred --CHHHHHHHHHHHHh
Confidence 45666665555544
No 364
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=92.92 E-value=0.76 Score=44.05 Aligned_cols=114 Identities=20% Similarity=0.268 Sum_probs=70.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc-----CCCceEEE-ecCCCCHHHHHHHHHhCcCEEEecHHH--HH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGRPV--VY 310 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~i~vi~-~GGI~~~~dv~kalalGAd~V~igr~~--l~ 310 (366)
.+.|+..|++|-.+...-.-..|++-++..+...+ +.++.||+ +|-+|+.-|++..+..|||+|.=.-+| +.
T Consensus 152 v~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~PYla~e~~~ 231 (287)
T PF04898_consen 152 VREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVNPYLAYETIR 231 (287)
T ss_dssp HHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHCCHHHHH
T ss_pred HHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhcHHHHHHHHH
Confidence 88999999999865322112334555555555443 33566554 678999999999999999998532221 11
Q ss_pred HhhhcC-------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017781 311 SLAAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 352 (366)
Q Consensus 311 ~l~~~G-------~~gv~~~~~~l~~el~~~m~~~G~~~l~el~~~~l~ 352 (366)
.+...| ++.+.+++..+.+.|...|..+|.+.++.-++..+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~gaqiF 280 (287)
T PF04898_consen 232 ELAERGELPELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRGAQIF 280 (287)
T ss_dssp HCCCCCCCCT--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--E
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhcccceee
Confidence 122222 367899999999999999999999999888766543
No 365
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=92.85 E-value=1.2 Score=43.27 Aligned_cols=83 Identities=8% Similarity=0.230 Sum_probs=55.9
Q ss_pred CceEEEeeecC-CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhH
Q 017781 123 GIRFFQLYVYK-DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (366)
Q Consensus 123 ~~~~~Qly~~~-d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (366)
-|.++.+-.+. +.+...++++.++++|++.|.|+-.+.. +++
T Consensus 134 ~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~---------~~y---------------------------- 176 (312)
T PRK10550 134 LPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE---------DGY---------------------------- 176 (312)
T ss_pred cceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc---------cCC----------------------------
Confidence 36666654332 2234678888888999999877532110 000
Q ss_pred HHhhhccCCCCCHHHHHHHHHhcCCCEEEEe-ccCHHH-----HHcCCcEEEE
Q 017781 202 AYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAED-----VQAGAAGIIV 248 (366)
Q Consensus 202 ~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK~-v~~~~d-----~~aGad~I~v 248 (366)
.-+...|+.++++++..++||+.=| +.+++| .+.|+|+|-+
T Consensus 177 ------~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmi 223 (312)
T PRK10550 177 ------RAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMI 223 (312)
T ss_pred ------CCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEE
Confidence 0122479999999999999988775 468877 5689999977
No 366
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=92.84 E-value=3.3 Score=37.30 Aligned_cols=109 Identities=23% Similarity=0.273 Sum_probs=61.0
Q ss_pred HHHHHHHhc-CCCEEEEeccCHHH---HHcCCcEEEEc----CCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 216 DVKWLQTIT-KLPILVKGVLTAED---VQAGAAGIIVS----NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 216 ~i~~lr~~~-~~pv~vK~v~~~~d---~~aGad~I~vs----~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
.++.+|+.- +.-+.+|-....++ ...-+|.+-|- +.|| |. .-+....-+..+++.. .++.+=+|||+ +
T Consensus 104 lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGG-Qk-Fme~mm~KV~~lR~ky-p~l~ievDGGv-~ 179 (224)
T KOG3111|consen 104 LVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGG-QK-FMEDMMPKVEWLREKY-PNLDIEVDGGV-G 179 (224)
T ss_pred HHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCch-hh-hHHHHHHHHHHHHHhC-CCceEEecCCc-C
Confidence 456666642 22344444445555 22345555432 2233 21 1112223334444332 25667799999 5
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHHHHHH
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELA 334 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~el~~~ 334 (366)
++-+-|+.++||+++..|+.++.+ .--.++|..|+++....
T Consensus 180 ~~ti~~~a~AGAN~iVaGsavf~a------~d~~~vi~~lr~~v~~a 220 (224)
T KOG3111|consen 180 PSTIDKAAEAGANMIVAGSAVFGA------ADPSDVISLLRNSVEKA 220 (224)
T ss_pred cchHHHHHHcCCCEEEecceeecC------CCHHHHHHHHHHHHhhh
Confidence 678999999999999999987643 12235677777766543
No 367
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=92.75 E-value=2.3 Score=40.90 Aligned_cols=98 Identities=20% Similarity=0.262 Sum_probs=69.2
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcc--hHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHhCcCEEEecHHHHHHh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~vi~~GGI~~~-~dv~kalalGAd~V~igr~~l~~l 312 (366)
.+.|+|.+-++. ||-+ .+.| .++.|.+|++.+ ++|+..=||=..+ +++.|++.+|..-|-+++-+-.+.
T Consensus 166 ~~TgvD~LAvaiGt~HG~Y---~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~~a~ 240 (286)
T PRK08610 166 EKTGIDALAPALGSVHGPY---KGEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQIAS 240 (286)
T ss_pred HHHCCCEEEeecccccccc---CCCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHHHHHH
Confidence 567999999875 4432 2333 678899999988 7999999987777 667789999999999999764432
Q ss_pred hh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 313 AA-------EG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 313 ~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
.. .. ..-.....+.+++.++..|+.+|..
T Consensus 241 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~ 282 (286)
T PRK08610 241 AKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTS 282 (286)
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 10 01 1223344566777777888888754
No 368
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=92.64 E-value=9.3 Score=36.11 Aligned_cols=177 Identities=18% Similarity=0.188 Sum_probs=98.5
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec-----CCCCCCCHHHHhc-------cCC--CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-----s~~~~~~~e~i~~-------~~~--~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-...++-..+.+-+.+.|+..++ |++.+.+.+|..+ ... .+.++++. ..+.+.
T Consensus 2 ~~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~ 80 (281)
T cd00408 2 IPALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG-ANSTRE 80 (281)
T ss_pred CCCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC-CccHHH
Confidence 35566777544434445556788888888876553 3334566665432 222 34555554 234555
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHH
Q 017781 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (366)
..++++.++++|++++++. .|... + ....-..+..
T Consensus 81 ~i~~a~~a~~~Gad~v~v~--pP~y~------------~-------------------------------~~~~~~~~~~ 115 (281)
T cd00408 81 AIELARHAEEAGADGVLVV--PPYYN------------K-------------------------------PSQEGIVAHF 115 (281)
T ss_pred HHHHHHHHHHcCCCEEEEC--CCcCC------------C-------------------------------CCHHHHHHHH
Confidence 7788889999999999873 22110 0 0000122345
Q ss_pred HHHHHhcCCCEEEEecc-------CHHH----HHc-CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCC
Q 017781 218 KWLQTITKLPILVKGVL-------TAED----VQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 285 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v~-------~~~d----~~a-Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI 285 (366)
+.+.+.+++|+++-... +++. .+. .+-+|.-+ . .....+.++++..++++.|+. |.
T Consensus 116 ~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s---------~-~d~~~~~~~~~~~~~~~~v~~-G~- 183 (281)
T cd00408 116 KAVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDS---------S-GDLDRLTRLIALLGPDFAVLS-GD- 183 (281)
T ss_pred HHHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeC---------C-CCHHHHHHHHHhcCCCeEEEE-cc-
Confidence 55566667888876442 3333 210 11222211 1 244455566655544554443 42
Q ss_pred CCHHHHHHHHHhCcCEEEecHHH
Q 017781 286 RRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~igr~~ 308 (366)
...+...+.+|++++.-|..-
T Consensus 184 --d~~~~~~l~~G~~G~i~~~~n 204 (281)
T cd00408 184 --DDLLLPALALGADGAISGAAN 204 (281)
T ss_pred --hHHHHHHHHcCCCEEEehHHh
Confidence 677888999999999988753
No 369
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.55 E-value=2 Score=40.68 Aligned_cols=37 Identities=35% Similarity=0.391 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCCEEEEe-ccCHHH---HHcCCcEEEEcC
Q 017781 214 WKDVKWLQTITKLPILVKG-VLTAED---VQAGAAGIIVSN 250 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~-v~~~~d---~~aGad~I~vs~ 250 (366)
.+.++++|+..++|+++.. +.++++ ...+||+++|..
T Consensus 189 ~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~ADGviVGS 229 (258)
T PRK13111 189 AELVARLKAHTDLPVAVGFGISTPEQAAAIAAVADGVIVGS 229 (258)
T ss_pred HHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHhCCEEEEcH
Confidence 4579999998899999985 457777 334599999854
No 370
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=92.54 E-value=3.8 Score=36.56 Aligned_cols=83 Identities=25% Similarity=0.203 Sum_probs=55.7
Q ss_pred HHHHHHHHHh-cCCCEEE--EeccC----HHH-HHcCCcEEEEcCCCccCCCCCcchH-HHHHHHHHHcCCCceEEEe-c
Q 017781 214 WKDVKWLQTI-TKLPILV--KGVLT----AED-VQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLD-G 283 (366)
Q Consensus 214 ~~~i~~lr~~-~~~pv~v--K~v~~----~~d-~~aGad~I~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~i~vi~~-G 283 (366)
.+.++++|+. .+.|+++ |.... .+. .++|+|+|+++.... +... +.+..++ .. .++++++ =
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~------~~~~~~~i~~~~-~~--g~~~~v~~~ 111 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP------LSTIKKAVKAAK-KY--GKEVQVDLI 111 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC------HHHHHHHHHHHH-Hc--CCeEEEEEe
Confidence 5678888886 4788877 33221 122 899999999865321 1122 2333333 22 5777765 7
Q ss_pred CCCCHHHHHHHHHhCcCEEEec
Q 017781 284 GVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 284 GI~~~~dv~kalalGAd~V~ig 305 (366)
+..|+.++.+++..|+|.|.++
T Consensus 112 ~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 112 GVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred CCCCHHHHHHHHHCCCCEEEEc
Confidence 8999999999888999999985
No 371
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.53 E-value=0.7 Score=42.72 Aligned_cols=77 Identities=16% Similarity=0.095 Sum_probs=50.3
Q ss_pred CHHHHHHHHHhc-----CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEec
Q 017781 213 SWKDVKWLQTIT-----KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 283 (366)
Q Consensus 213 ~~~~i~~lr~~~-----~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G 283 (366)
..+.|+.+++.+ ++-|.+..|++.++ .++|+++|+--+ ...+++..+. .. ++|++ =
T Consensus 53 a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~----------~~~~v~~~~~-~~--~i~~i--P 117 (222)
T PRK07114 53 AHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPL----------FNPDIAKVCN-RR--KVPYS--P 117 (222)
T ss_pred HHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHH-Hc--CCCEe--C
Confidence 345577776443 24455556788887 999999996211 1223333333 22 45544 5
Q ss_pred CCCCHHHHHHHHHhCcCEEEe
Q 017781 284 GVRRGTDVFKALALGASGIFI 304 (366)
Q Consensus 284 GI~~~~dv~kalalGAd~V~i 304 (366)
|+.|+.++..|+.+||+.|=+
T Consensus 118 G~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 118 GCGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CCCCHHHHHHHHHCCCCEEEE
Confidence 899999999999999998744
No 372
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=92.48 E-value=0.43 Score=45.13 Aligned_cols=163 Identities=22% Similarity=0.269 Sum_probs=81.8
Q ss_pred cCcccCCceEeccc---c----cccccCChhhHHHHHHHHHc--CCceecCCCCC----CCHHHHh-ccCC-CceEEEee
Q 017781 66 LGFKISMPIMIAPT---A----MQKMAHPEGEYATARAASAA--GTIMTLSSWST----SSVEEVA-STGP-GIRFFQLY 130 (366)
Q Consensus 66 ~g~~l~~Pi~iApm---~----~~~l~~~~~e~~la~aa~~~--G~~~~vs~~~~----~~~e~i~-~~~~-~~~~~Qly 130 (366)
+|.+++-|+.=.|+ + ..+-...+....+.+..++. ++|.++=+..+ ..++.-. ++.. +.-.+ |.
T Consensus 50 LGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGl-iv 128 (265)
T COG0159 50 LGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGL-LV 128 (265)
T ss_pred ecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEE-Ee
Confidence 47888888776664 1 11111123356777777754 45666644333 2333311 1111 11111 22
Q ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCc-chhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG-RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 131 ~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g-~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
+.-..+...++.+.+++.|.+.|.+- +|... +|.+.+...- .+...- ++.....+.. ...
T Consensus 129 pDLP~ee~~~~~~~~~~~gi~~I~lv--aPtt~~~rl~~i~~~a---~GFiY~---------vs~~GvTG~~-----~~~ 189 (265)
T COG0159 129 PDLPPEESDELLKAAEKHGIDPIFLV--APTTPDERLKKIAEAA---SGFIYY---------VSRMGVTGAR-----NPV 189 (265)
T ss_pred CCCChHHHHHHHHHHHHcCCcEEEEe--CCCCCHHHHHHHHHhC---CCcEEE---------EecccccCCC-----ccc
Confidence 33345555667777778888776542 34332 4444443221 011100 0000000000 001
Q ss_pred CCCCHHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEc
Q 017781 210 RSLSWKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs 249 (366)
....-+.++++|+.+++|+.+. |+.++++ .++ ||+++|.
T Consensus 190 ~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 190 SADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred chhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 1123456999999999999999 6677776 777 9999884
No 373
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=92.48 E-value=0.26 Score=45.69 Aligned_cols=73 Identities=23% Similarity=0.370 Sum_probs=47.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHH-----------HHHHHHHhCcCEEEecHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-----------DVFKALALGASGIFIGRP 307 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~-----------dv~kalalGAd~V~igr~ 307 (366)
.+.|+|+++++.+ .+..+++..+ .--+++.+||+ +. .+-.++..|||.+.+||+
T Consensus 145 ~~~g~dgvv~~~~-------------~~~~ir~~~~-~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~ 209 (230)
T PRK00230 145 QEAGLDGVVCSAQ-------------EAAAIREATG-PDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRP 209 (230)
T ss_pred HHcCCeEEEeChH-------------HHHHHHhhcC-CceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCc
Confidence 6789999987542 1344555543 33457779998 33 477788899999999999
Q ss_pred HHHHhhhcCHHHHHHHHHHHHHHHH
Q 017781 308 VVYSLAAEGEKGVRRVLEMLREEFE 332 (366)
Q Consensus 308 ~l~~l~~~G~~gv~~~~~~l~~el~ 332 (366)
+..+ .-+ ....+.+.+++.
T Consensus 210 I~~a---~dP---~~~a~~i~~~i~ 228 (230)
T PRK00230 210 ITQA---ADP---AAAYEAILAEIA 228 (230)
T ss_pred ccCC---CCH---HHHHHHHHHHhh
Confidence 8643 122 234455555543
No 374
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.29 E-value=1.2 Score=43.56 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=46.3
Q ss_pred HHcCC--cEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGa--d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+ |.|.++...| .+....+.+.++++..+ ++|||+ |.|.|.+++..++.+|||++.+|
T Consensus 106 v~ag~~~d~i~iD~a~g----h~~~~~e~I~~ir~~~p-~~~vi~-g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 106 AAEGLTPEYITIDIAHG----HSDSVINMIQHIKKHLP-ETFVIA-GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HhcCCCCCEEEEECCCC----chHHHHHHHHHHHhhCC-CCeEEE-EecCCHHHHHHHHHcCcCEEEEC
Confidence 88855 9999865333 23456677888887663 466655 67889999999999999999877
No 375
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=92.28 E-value=10 Score=35.88 Aligned_cols=84 Identities=17% Similarity=0.051 Sum_probs=51.7
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------cCC--CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~~~--~~~~~Qly~~~d~~~ 137 (366)
.|..+.|+.-..-.+.++-....+-+.+.|+...+ + ++.+.+.+|..+ ... .+.++++. ..+.+.
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~ 83 (284)
T cd00950 5 ITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG-SNNTAE 83 (284)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC-CccHHH
Confidence 35566777433334444456777788888875543 2 333456665432 222 34556654 245667
Q ss_pred HHHHHHHHHHcCCCEEEEe
Q 017781 138 VAQLVRRAERAGFKAIALT 156 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vt 156 (366)
+.++++.|+++|++++++.
T Consensus 84 ~~~~a~~a~~~G~d~v~~~ 102 (284)
T cd00950 84 AIELTKRAEKAGADAALVV 102 (284)
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 7888899999999998873
No 376
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=92.21 E-value=0.47 Score=49.01 Aligned_cols=248 Identities=16% Similarity=0.218 Sum_probs=130.0
Q ss_pred cccceeeeccccC-CCCCCccceeEc-CcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHHHHhc
Q 017781 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (366)
Q Consensus 42 ~f~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e~i~~ 119 (366)
.|||+.|+|.... ..+++|++|.+. +..+..||+.|||...+ +.+++.+.++.|...+++. +++.++..+
T Consensus 10 t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT------~~ela~ava~~GglG~i~~--~~~~e~~~~ 81 (486)
T PRK05567 10 TFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVT------EARMAIAMAREGGIGVIHK--NMSIEEQAE 81 (486)
T ss_pred CccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcC------HHHHHHHHHhCCCCCEecC--CCCHHHHHH
Confidence 5999999998653 456899998875 57788999999997654 6788888899988888863 445554422
Q ss_pred c------CCCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC-Cc-chhHHHhhhcCCCCccccccccc-cccC
Q 017781 120 T------GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR-LG-RREADIKNRFTLPPFLTLKNFQG-LDLG 190 (366)
Q Consensus 120 ~------~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~-~g-~r~~d~~~~~~~p~~~~~~~~~~-~~~~ 190 (366)
. ......-++..-.......+.++...+.++..+.|.-+... .| -..+|+....... .....+.. ....
T Consensus 82 ~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~--~~V~dim~~~~~v 159 (486)
T PRK05567 82 EVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLS--QPVSEVMTKERLV 159 (486)
T ss_pred HHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCC--CcHHHHcCCCCCE
Confidence 1 01000001111112233455666667777777665422100 01 0112222100000 00000000 0000
Q ss_pred CCcc-ccchhhHHHhhhc-------c--C----CCCCHHHH-HHHHHh-----cCCCEEEEeccC--H---HH----HHc
Q 017781 191 KMDE-ANDSGLAAYVAGQ-------I--D----RSLSWKDV-KWLQTI-----TKLPILVKGVLT--A---ED----VQA 241 (366)
Q Consensus 191 ~~~~-~~~~~~~~~~~~~-------~--d----~~~~~~~i-~~lr~~-----~~~pv~vK~v~~--~---~d----~~a 241 (366)
.+.. .........+... . + .-.+.+++ +.+... ....+.+....+ + +. .++
T Consensus 160 ~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~a 239 (486)
T PRK05567 160 TVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEA 239 (486)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHh
Confidence 0000 0000000000000 0 0 01133332 222110 122455555433 2 22 899
Q ss_pred CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 242 GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 242 Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
|+|.|++....|+. ...++.+.++++..+ ++||++ |+|.|.+++..++.+|||+|-+|
T Consensus 240 gvdvivvD~a~g~~----~~vl~~i~~i~~~~p-~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 240 GVDVLVVDTAHGHS----EGVLDRVREIKAKYP-DVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred CCCEEEEECCCCcc----hhHHHHHHHHHhhCC-CCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 99999886532321 235667777877653 688888 99999999999999999999775
No 377
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=92.18 E-value=4.6 Score=44.16 Aligned_cols=216 Identities=15% Similarity=0.189 Sum_probs=103.7
Q ss_pred ceeEcCcccCCceEecccccccccCChh-----hHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHH
Q 017781 62 NTTVLGFKISMPIMIAPTAMQKMAHPEG-----EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRN 136 (366)
Q Consensus 62 st~l~g~~l~~Pi~iApm~~~~l~~~~~-----e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~ 136 (366)
-.+|.|+++++-|+++||.... ..++ ..+.-..-++-|+++++.+....+.+. ...+ ....+|....-+
T Consensus 402 P~~i~~~~l~NRi~~~pm~~~~--~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g--~~~~--~~~~~~~d~~i~ 475 (765)
T PRK08255 402 PFRLRGLTLKNRVVVSPMAMYS--AVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEG--RITP--GCPGLYNDEQEA 475 (765)
T ss_pred ccccCCEeeCCCccccCccccc--CCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCc--CCCC--CCCccCCHHHHH
Confidence 3567889999999999995322 2222 234444555568888876654333211 1111 112234222234
Q ss_pred HHHHHHHHHHHc-CCCEEEEecCCCCCcchhHHHhhhc---CCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 137 VVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRF---TLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 137 ~~~~~l~ra~~~-G~~ai~vtvd~p~~g~r~~d~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
..+++.+.+.+. |++. .+-+..+ |..... ...+ ..|. . . .+......+ . ............+
T Consensus 476 ~~~~~~~~vh~~gg~~i-~~QL~h~--Gr~~~~-~~~~~~~~~~~--~-~--~~~~~~~pS--~---~~~~~~~~~p~~m 541 (765)
T PRK08255 476 AWKRIVDFVHANSDAKI-GIQLGHS--GRKGST-RLGWEGIDEPL--E-E--GNWPLISAS--P---LPYLPGSQVPREM 541 (765)
T ss_pred HHHHHHHHHHhcCCceE-EEEccCC--cccccc-ccccccccccc--c-c--CCCceeCCC--C---CcCCCCCCCCCcC
Confidence 566677777777 4654 3444332 221100 0000 0000 0 0 000000000 0 0000000011246
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCHHH-HHcCCcEEEEcCCCcc---C----------CC-CCc------chHHHHHHHHH
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTAED-VQAGAAGIIVSNHGAR---Q----------LD-YVP------ATIMALEEVVK 271 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~~d-~~aGad~I~vs~~gg~---~----------~~-~~~------~~~~~l~~i~~ 271 (366)
+.++|+++.+.+- ..... .++|+|+|.++...|+ | -. +|- -..+.+..|++
T Consensus 542 t~~eI~~~i~~f~--------~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~ 613 (765)
T PRK08255 542 TRADMDRVRDDFV--------AAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRA 613 (765)
T ss_pred CHHHHHHHHHHHH--------HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHH
Confidence 7788888877642 01122 8899999999754332 1 11 221 13466777777
Q ss_pred HcCCCceEEE--------ecCCC--CHHHHHHHHH-hCcCEEEec
Q 017781 272 ATQGRIPVFL--------DGGVR--RGTDVFKALA-LGASGIFIG 305 (366)
Q Consensus 272 ~~~~~i~vi~--------~GGI~--~~~dv~kala-lGAd~V~ig 305 (366)
+++.++||.+ .||.. ...+++|.|+ .|+|.+-|.
T Consensus 614 ~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 614 VWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred hcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 7765666543 23331 2235667776 799999885
No 378
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=92.02 E-value=0.56 Score=43.48 Aligned_cols=38 Identities=21% Similarity=0.442 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEc
Q 017781 212 LSWKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs 249 (366)
.+...++.+++..++||||- |+.++.| .+.|+|+|-|-
T Consensus 162 ~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvN 204 (247)
T PF05690_consen 162 QNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVN 204 (247)
T ss_dssp STHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEES
T ss_pred CCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehh
Confidence 35677999999999999998 5567766 99999999763
No 379
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=91.97 E-value=2.9 Score=39.41 Aligned_cols=38 Identities=34% Similarity=0.402 Sum_probs=31.3
Q ss_pred CHHHHHHHHHhcCCCEEEEec-cCHHH----HHcCCcEEEEcC
Q 017781 213 SWKDVKWLQTITKLPILVKGV-LTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-~~~~d----~~aGad~I~vs~ 250 (366)
..+.++++|+.++.||++-+. .++++ .++|||+++|..
T Consensus 186 ~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 186 LNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 456799999999999999865 45877 889999999854
No 380
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=91.95 E-value=0.99 Score=41.75 Aligned_cols=38 Identities=18% Similarity=0.413 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEc
Q 017781 212 LSWKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs 249 (366)
.+...++-+++..++||||- |+.++.| .|.|+|+|-+.
T Consensus 169 ~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 169 QNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred CCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 35678899999999999998 5566665 99999999753
No 381
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=91.90 E-value=4.9 Score=41.62 Aligned_cols=214 Identities=18% Similarity=0.309 Sum_probs=107.8
Q ss_pred eccccCC-CCCCccceeEcCcccCCceEecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCHH-------HHhcc
Q 017781 49 RPRILID-VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVE-------EVAST 120 (366)
Q Consensus 49 ~pr~l~~-~~~vd~st~l~g~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~e-------~i~~~ 120 (366)
-|+.... ...+-++|.|--+.=..|+++|-|+=.+ .+..+..+++++|--.-+......+.| .+...
T Consensus 11 aPklvk~~~Gr~~v~TkfsrLtGr~PillaGMTPtT-----Vdp~ivAAaAnAGhwaELAGGGq~t~e~~~~~i~ql~~~ 85 (717)
T COG4981 11 APKLVKLPDGRVKVSTKFSRLTGRSPILLAGMTPTT-----VDPDIVAAAANAGHWAELAGGGQVTEEIFTNAIEQLVSL 85 (717)
T ss_pred CcceEecCCCcEEEeechhhhcCCCCeeecCCCCCc-----CCHHHHHHHhcCCceeeecCCcccCHHHHHHHHHHHHhc
Confidence 3555443 2345566665544445799999987544 255788888888876666544333322 22211
Q ss_pred C-CC-ceEEE-ee----ecCCHHHHHHHHHHHHHcCCC--EEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCC
Q 017781 121 G-PG-IRFFQ-LY----VYKDRNVVAQLVRRAERAGFK--AIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (366)
Q Consensus 121 ~-~~-~~~~Q-ly----~~~d~~~~~~~l~ra~~~G~~--ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (366)
. |+ .+-|+ +| .++-.=--.++++++++.|+. .++|+.+.|..- -..++.+.+ .+.
T Consensus 86 lepG~t~qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~le-~A~ElI~~L-----------~~~---- 149 (717)
T COG4981 86 LEPGRTAQFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPSLE-EAVELIEEL-----------GDD---- 149 (717)
T ss_pred cCCCccceeeEEEechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCcHH-HHHHHHHHH-----------hhc----
Confidence 1 11 11222 12 111100124578888888765 566665555320 001111110 000
Q ss_pred CccccchhhHHHhhhccCCCCCHHHHHHHHHhc----CCCEEEEeccCHHHHHcCCcEEEEcCCCccCCCC---CcchHH
Q 017781 192 MDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT----KLPILVKGVLTAEDVQAGAAGIIVSNHGARQLDY---VPATIM 264 (366)
Q Consensus 192 ~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~----~~pv~vK~v~~~~d~~aGad~I~vs~~gg~~~~~---~~~~~~ 264 (366)
+. .|+. ..| =+.+.|+.+.+.. ..||++-. -.+++|...++ --+.+.
T Consensus 150 -------G~-~yv~--fKP-GtIeqI~svi~IAka~P~~pIilq~---------------egGraGGHHSweDld~llL~ 203 (717)
T COG4981 150 -------GF-PYVA--FKP-GTIEQIRSVIRIAKANPTFPIILQW---------------EGGRAGGHHSWEDLDDLLLA 203 (717)
T ss_pred -------Cc-eeEE--ecC-CcHHHHHHHHHHHhcCCCCceEEEE---------------ecCccCCccchhhcccHHHH
Confidence 00 0110 011 1444444443332 46766542 12332211111 122334
Q ss_pred HHHHHHHHcCCCceEEEecCCCCHHHHHHHHH------hC-----cCEEEecHHHHHH
Q 017781 265 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALA------LG-----ASGIFIGRPVVYS 311 (366)
Q Consensus 265 ~l~~i~~~~~~~i~vi~~GGI~~~~dv~kala------lG-----Ad~V~igr~~l~~ 311 (366)
...++++. +++.+++-|||.+++|.+.+|- .| .|++.+|++.|.+
T Consensus 204 tYs~lR~~--~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMat 259 (717)
T COG4981 204 TYSELRSR--DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMAT 259 (717)
T ss_pred HHHHHhcC--CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhh
Confidence 44555542 3799999999999999997762 33 5999999988753
No 382
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=91.86 E-value=2.7 Score=41.03 Aligned_cols=183 Identities=18% Similarity=0.185 Sum_probs=98.3
Q ss_pred CCceEecccccccccCChhhHHHHHHHHHcCCcee---cCCCCC------CC--------HHHHhccCCCceEEEeeecC
Q 017781 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT---LSSWST------SS--------VEEVASTGPGIRFFQLYVYK 133 (366)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~---vs~~~~------~~--------~e~i~~~~~~~~~~Qly~~~ 133 (366)
..|++++=+ +. .++.-..+++.++++|+.+. +|.... .. ++.+++....|.++.|-+.
T Consensus 99 ~~pvi~si~-g~---~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~- 173 (325)
T cd04739 99 SIPVIASLN-GV---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPF- 173 (325)
T ss_pred CCeEEEEeC-CC---CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCC-
Confidence 578776633 22 23333588888888886554 221100 01 1222333336788887542
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
...+.++++.++++|+++++++--.+.. .-|+...-..+. .. ++.....+..
T Consensus 174 -~~~~~~~a~~l~~~Gadgi~~~nt~~~~---~id~~~~~~~~~-------~g-----------------lSG~~~~~~a 225 (325)
T cd04739 174 -FSALAHMAKQLDAAGADGLVLFNRFYQP---DIDLETLEVVPN-------LL-----------------LSSPAEIRLP 225 (325)
T ss_pred -ccCHHHHHHHHHHcCCCeEEEEcCcCCC---CccccccceecC-------CC-----------------cCCccchhHH
Confidence 2346778888999999999875332211 001000000000 00 0100111245
Q ss_pred HHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEcCCCccCCCCCcchH-HHHHHHHHHcCCCceEEEecCCCC
Q 017781 214 WKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
++.+.++++..++||+.= |+.+.+| ..+|||+|.+...- +..|+..+ ..+.++.+++. .-|+.+
T Consensus 226 l~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~---~~~gp~~~~~i~~~L~~~l~-------~~g~~~ 295 (325)
T cd04739 226 LRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSAL---LRHGPDYIGTLLAGLEAWME-------EHGYES 295 (325)
T ss_pred HHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhh---hhcCchHHHHHHHHHHHHHH-------HcCCCC
Confidence 777888888889998854 5788888 77999999875311 12233322 33444444431 257888
Q ss_pred HHHHHHHHH
Q 017781 288 GTDVFKALA 296 (366)
Q Consensus 288 ~~dv~kala 296 (366)
-.|+.-.++
T Consensus 296 i~e~~G~~~ 304 (325)
T cd04739 296 VQQLRGSMS 304 (325)
T ss_pred HHHHhcccc
Confidence 888764433
No 383
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=91.65 E-value=1.6 Score=44.67 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCC-EEE--EeccCHHH---HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 214 WKDVKWLQTITKLP-ILV--KGVLTAED---VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 214 ~~~i~~lr~~~~~p-v~v--K~v~~~~d---~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
.+...++....+.. ++| =|+.+++| ...|+|++.|... +-..+.....+.++.. ..+.| .|+++
T Consensus 197 ~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~~~davLiG~~----lm~~~d~~~~~~~L~~---~~vKI---CGit~ 266 (454)
T PRK09427 197 LNRTRELAPLIPADVIVISESGIYTHAQVRELSPFANGFLIGSS----LMAEDDLELAVRKLIL---GENKV---CGLTR 266 (454)
T ss_pred HHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHhcCCEEEECHH----HcCCCCHHHHHHHHhc---ccccc---CCCCC
Confidence 34455555554322 222 26778888 5568999987432 2223333444444432 12222 57999
Q ss_pred HHHHHHHHHhCcCEEEec
Q 017781 288 GTDVFKALALGASGIFIG 305 (366)
Q Consensus 288 ~~dv~kalalGAd~V~ig 305 (366)
.+|+..+..+|||++++=
T Consensus 267 ~eda~~a~~~GaD~lGfI 284 (454)
T PRK09427 267 PQDAKAAYDAGAVYGGLI 284 (454)
T ss_pred HHHHHHHHhCCCCEEeeE
Confidence 999999999999999883
No 384
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=91.62 E-value=2.1 Score=40.53 Aligned_cols=94 Identities=24% Similarity=0.375 Sum_probs=59.4
Q ss_pred CHHHHHHHHHhcCCCEEEEecc--CHHH--------HHcCCcEEEEcCCCccCCC---CCcchHHHHHHHHHHcCCCceE
Q 017781 213 SWKDVKWLQTITKLPILVKGVL--TAED--------VQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~--~~~d--------~~aGad~I~vs~~gg~~~~---~~~~~~~~l~~i~~~~~~~i~v 279 (366)
....++.+.+ +++||++|..+ +.++ .+.|.+-|++--.|-+... .-...+..+..+++.. .+||
T Consensus 121 n~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~--~~pV 197 (260)
T TIGR01361 121 NFELLKEVGK-QGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET--HLPI 197 (260)
T ss_pred CHHHHHHHhc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh--CCCE
Confidence 3455666654 58999999653 5766 6678865655332322221 1124567777777655 6899
Q ss_pred EEec----CCCC--HHHHHHHHHhCcCEEEecHHHH
Q 017781 280 FLDG----GVRR--GTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 280 i~~G----GI~~--~~dv~kalalGAd~V~igr~~l 309 (366)
+.|. |.|. ..-...|+++||++++|-+-|-
T Consensus 198 ~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t 233 (260)
T TIGR01361 198 IVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPD 233 (260)
T ss_pred EEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 9943 3222 2344478899999999988653
No 385
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=91.61 E-value=1.3 Score=40.47 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=65.2
Q ss_pred cCCCCCHHHHHHHHHhcCCCEEEEeccCHH---H----HHcCCcEEEEcCCCcc-C-CCCCcchHHHHHHHHHHcCCCce
Q 017781 208 IDRSLSWKDVKWLQTITKLPILVKGVLTAE---D----VQAGAAGIIVSNHGAR-Q-LDYVPATIMALEEVVKATQGRIP 278 (366)
Q Consensus 208 ~d~~~~~~~i~~lr~~~~~pv~vK~v~~~~---d----~~aGad~I~vs~~gg~-~-~~~~~~~~~~l~~i~~~~~~~i~ 278 (366)
.+.+.+.+.++.+++..++||+--.....+ . ...-+|.+.+...... . ..+-.-.|+.++.. .. ..|
T Consensus 81 lHG~e~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~--~~~ 156 (208)
T COG0135 81 LHGDEDPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RL--SKP 156 (208)
T ss_pred ECCCCCHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc--cc--cCC
Confidence 355678899999999888886644443321 1 5566899998875211 1 11223467777655 12 678
Q ss_pred EEEecCCCCHHHHHHHHHhCc-CEEEecHH
Q 017781 279 VFLDGGVRRGTDVFKALALGA-SGIFIGRP 307 (366)
Q Consensus 279 vi~~GGI~~~~dv~kalalGA-d~V~igr~ 307 (366)
++..||| +++.|.+|++++. .+|=+.+-
T Consensus 157 ~~LAGGL-~p~NV~~ai~~~~p~gvDvSSG 185 (208)
T COG0135 157 VMLAGGL-NPDNVAEAIALGPPYGVDVSSG 185 (208)
T ss_pred EEEECCC-CHHHHHHHHHhcCCceEEeccc
Confidence 9999999 7999999999987 77776643
No 386
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=91.48 E-value=1.6 Score=38.47 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=48.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCC-CceEEEecCCCC--------HHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGVRR--------GTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~-~i~vi~~GGI~~--------~~dv~kalalGAd~V~igr~~l 309 (366)
.+.|+|+|.+.+ +.+..+++..++ ++||++.=|-.+ -+.+..|..+|||++++..|+.
T Consensus 23 ~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~ 89 (201)
T cd00945 23 IEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIG 89 (201)
T ss_pred HHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHH
Confidence 567999998754 556666677766 789776433333 3445567779999999988876
Q ss_pred HHhhhcCHHHHHHHHHHHHH
Q 017781 310 YSLAAEGEKGVRRVLEMLRE 329 (366)
Q Consensus 310 ~~l~~~G~~gv~~~~~~l~~ 329 (366)
+... ..++++.+.+..+.+
T Consensus 90 ~~~~-~~~~~~~~~~~~i~~ 108 (201)
T cd00945 90 SLKE-GDWEEVLEEIAAVVE 108 (201)
T ss_pred HHhC-CCHHHHHHHHHHHHH
Confidence 5421 013444444444433
No 387
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=91.37 E-value=1.3 Score=43.33 Aligned_cols=39 Identities=26% Similarity=0.619 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHhcC-CCEEEEe-ccCHHH-----HHcCCcEEEEc
Q 017781 211 SLSWKDVKWLQTITK-LPILVKG-VLTAED-----VQAGAAGIIVS 249 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~-~pv~vK~-v~~~~d-----~~aGad~I~vs 249 (366)
+..|+.|+++|+..+ +||+.=| |.+.++ ...|+|+|.+.
T Consensus 183 ~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 183 PADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred ccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 368999999999998 9998886 478887 67889999773
No 388
>PLN02411 12-oxophytodienoate reductase
Probab=91.34 E-value=6.9 Score=39.27 Aligned_cols=85 Identities=16% Similarity=0.128 Sum_probs=45.3
Q ss_pred ceeEcCcccCCceEecccccccccCChh-----hHHHHHHHHHcCCceecCCCCCCCHHHHhccCCCceEEEeeecCCHH
Q 017781 62 NTTVLGFKISMPIMIAPTAMQKMAHPEG-----EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRN 136 (366)
Q Consensus 62 st~l~g~~l~~Pi~iApm~~~~l~~~~~-----e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~~~~~~Qly~~~d~~ 136 (366)
..+|.+.++++-|++|||+... . .++ ..+.-+.-++-| ++++.+....+.+. ...+ ....+|-...-+
T Consensus 15 P~~ig~~~lkNRiv~aPm~~~~-~-~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~g--~~~~--~~~gi~~d~~i~ 87 (391)
T PLN02411 15 PYKMGRFDLSHRVVLAPMTRCR-A-LNGIPNAALAEYYAQRSTPG-GFLISEGTLISPTA--PGFP--HVPGIYSDEQVE 87 (391)
T ss_pred CeeECCEEEcccCEECCcCcCc-C-CCCCCCHHHHHHHHHHHcCC-CEEEeCceEECccc--CcCC--CCCccCCHHHHH
Confidence 3578889999999999996432 2 222 123333333345 66665543322111 1111 112233222234
Q ss_pred HHHHHHHHHHHcCCCEE
Q 017781 137 VVAQLVRRAERAGFKAI 153 (366)
Q Consensus 137 ~~~~~l~ra~~~G~~ai 153 (366)
..+++.+.+++.|++.+
T Consensus 88 ~~~~l~~avH~~G~~i~ 104 (391)
T PLN02411 88 AWKKVVDAVHAKGSIIF 104 (391)
T ss_pred HHHHHHHHHHhcCCEEE
Confidence 56777788888898764
No 389
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=91.31 E-value=0.14 Score=45.46 Aligned_cols=141 Identities=19% Similarity=0.231 Sum_probs=79.1
Q ss_pred ceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHH
Q 017781 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (366)
Q Consensus 124 ~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (366)
...|=++ .|-....+++++++++|- -+.||+|. ..|+.- ....-+|
T Consensus 21 ~~vfLl~--g~I~~l~~~v~~~~~~gK-~vfVHiDl----------i~Gl~~---------------------D~~~i~~ 66 (175)
T PF04309_consen 21 EVVFLLT--GDIGNLKDIVKRLKAAGK-KVFVHIDL----------IEGLSR---------------------DEAGIEY 66 (175)
T ss_dssp SEEEE-S--EECCCHHHHHHHHHHTT--EEEEECCG----------EETB-S---------------------SHHHHHH
T ss_pred CEEEEEc--CcHHHHHHHHHHHHHcCC-EEEEEehh----------cCCCCC---------------------CHHHHHH
Confidence 3455454 344556788889998884 45678873 222210 0112233
Q ss_pred hhhcc--CCCC--CHHHHHHHHHhcCCCEEEEecc----CHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHH
Q 017781 204 VAGQI--DRSL--SWKDVKWLQTITKLPILVKGVL----TAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVV 270 (366)
Q Consensus 204 ~~~~~--d~~~--~~~~i~~lr~~~~~pv~vK~v~----~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~ 270 (366)
+.... |.-. -...++..|+. ++.-+-+... +.+. .+..+|+|-+-- + -....+.+++
T Consensus 67 L~~~~~~dGIISTk~~~i~~Ak~~-gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEilP-------g--~~p~vi~~i~ 136 (175)
T PF04309_consen 67 LKEYGKPDGIISTKSNLIKRAKKL-GLLTIQRIFLIDSSALETGIKQIEQSKPDAVEILP-------G--VMPKVIKKIR 136 (175)
T ss_dssp HHHTT--SEEEESSHHHHHHHHHT-T-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEES-------C--CHHHHHCCCC
T ss_pred HHHcCCCcEEEeCCHHHHHHHHHc-CCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEch-------H--HHHHHHHHHH
Confidence 33322 2222 23457777764 6666666432 2222 788899997622 1 1123444444
Q ss_pred HHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 271 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 271 ~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+.+ ++|||+.|=|++.+|+.++|..||++|....+-||
T Consensus 137 ~~~--~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 137 EET--NIPIIAGGLIRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp CCC--SS-EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred Hhc--CCCEEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 444 69999999999999999999999999999887665
No 390
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=91.28 E-value=0.47 Score=44.01 Aligned_cols=63 Identities=22% Similarity=0.382 Sum_probs=52.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
...++|+|+++++. .++++..+.|..+.+.. ++||++.+|+ +.+.+.+.|.. ||++.+|+.+=
T Consensus 174 er~~aDaVI~tG~~----TG~~~d~~el~~a~~~~--~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK 236 (263)
T COG0434 174 ERGLADAVIVTGSR----TGSPPDLEELKLAKEAV--DTPVLVGSGV-NPENIEELLKI-ADGVIVGTSLK 236 (263)
T ss_pred HccCCCEEEEeccc----CCCCCCHHHHHHHHhcc--CCCEEEecCC-CHHHHHHHHHH-cCceEEEEEEc
Confidence 66789999999853 24678889998888887 6999999998 67788888877 99999998763
No 391
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=91.18 E-value=0.92 Score=42.94 Aligned_cols=36 Identities=39% Similarity=0.634 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCEEEE-eccCHHH---HHcCCcEEEEcC
Q 017781 215 KDVKWLQTITKLPILVK-GVLTAED---VQAGAAGIIVSN 250 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK-~v~~~~d---~~aGad~I~vs~ 250 (366)
+.++.+|+.+++||.+. |+.++++ ...|+|+++|..
T Consensus 188 ~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~~~aDGvIVGS 227 (259)
T PF00290_consen 188 EFIKRIKKHTDLPVAVGFGISTPEQAKKLAAGADGVIVGS 227 (259)
T ss_dssp HHHHHHHHTTSS-EEEESSS-SHHHHHHHHTTSSEEEESH
T ss_pred HHHHHHHhhcCcceEEecCCCCHHHHHHHHccCCEEEECH
Confidence 56999999999999999 6778887 569999999854
No 392
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=90.91 E-value=5 Score=38.55 Aligned_cols=101 Identities=25% Similarity=0.329 Sum_probs=68.7
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcc--hHHHHHHHHHHcCCCceEEEecCCCCHH-HHHHHHHhCcCEEEecHHHHHHh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~vi~~GGI~~~~-dv~kalalGAd~V~igr~~l~~l 312 (366)
.+.|+|.+-|+- ||..... ..| .++.|.+|.+.++ ++|+..=||=..+. ++.|++.+|..-|-+++-+..+.
T Consensus 165 ~~TgvD~LAvaiGt~HG~y~~~-~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a~ 242 (287)
T PF01116_consen 165 EETGVDALAVAIGTAHGMYKGG-KKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIKNGISKINIGTELRRAF 242 (287)
T ss_dssp HHHTTSEEEE-SSSBSSSBSSS-SSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHHTTEEEEEESHHHHHHH
T ss_pred HHhCCCEEEEecCccccccCCC-CCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHHcCceEEEEehHHHHHH
Confidence 566889998874 4532211 133 5788999998874 69999999877666 78899999999999999876542
Q ss_pred hh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 313 AA-------EG------EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 313 ~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
.. .. ..-.....+.+++.++..|..+|..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 284 (287)
T PF01116_consen 243 TDALREYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSA 284 (287)
T ss_dssp HHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11 00 1223444566777788888888864
No 393
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=90.85 E-value=1.9 Score=41.01 Aligned_cols=91 Identities=24% Similarity=0.451 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccC-CCCCcchHHHHHHHHHHcCCCceEEEe
Q 017781 214 WKDVKWLQTITKLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQ-LDYVPATIMALEEVVKATQGRIPVFLD 282 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~-~~~~~~~~~~l~~i~~~~~~~i~vi~~ 282 (366)
.+.++.+.+ ++.||.+|-. .++++ .+.|-.-|++.-+|-+- ...-...+..++.+++.. ..+|||+|
T Consensus 120 tdLL~a~~~-t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~-t~lPVi~D 197 (281)
T PRK12457 120 TDLVVAIAK-TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTT-GDLPVIFD 197 (281)
T ss_pred HHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhC-CCCCEEEe
Confidence 455666555 5899999966 67776 77898989887766441 111233556677666642 25899987
Q ss_pred ---------------cCCCCH--HHHHHHHHhCcCEEEecH
Q 017781 283 ---------------GGVRRG--TDVFKALALGASGIFIGR 306 (366)
Q Consensus 283 ---------------GGI~~~--~dv~kalalGAd~V~igr 306 (366)
||.|.- .-+..|++.|||++++-.
T Consensus 198 pSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEv 238 (281)
T PRK12457 198 VTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEA 238 (281)
T ss_pred CCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 444432 223467789999999985
No 394
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=90.70 E-value=1.1 Score=44.13 Aligned_cols=100 Identities=19% Similarity=0.147 Sum_probs=60.8
Q ss_pred CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHH
Q 017781 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (366)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
.|.++.|-+..+.+.+.++++.++++|++++.++-..+.. . ++ .-+ ...+ . ....++ .
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~---~-~~----~~~---~~~~--------~-~gg~SG--~ 269 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSR---D-GL----KGL---PNAD--------E-AGGLSG--R 269 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCcccc---c-cc----ccc---ccCC--------C-CCCccc--H
Confidence 4788888765555567888899999999999886433210 0 00 000 0000 0 000000 0
Q ss_pred HhhhccCCCCCHHHHHHHHHhc--CCCEE-EEeccCHHH----HHcCCcEEEEc
Q 017781 203 YVAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 203 ~~~~~~d~~~~~~~i~~lr~~~--~~pv~-vK~v~~~~d----~~aGad~I~vs 249 (366)
......|+.++.+++.. ++||+ +.|+.+.+| ..+|||.|.+.
T Consensus 270 -----~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 270 -----PLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIY 318 (344)
T ss_pred -----HHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHH
Confidence 01124688899999988 78987 446788888 77999998653
No 395
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=90.44 E-value=3 Score=40.14 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=57.5
Q ss_pred HHHHHHhcCCCEEEEecc--CHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 217 VKWLQTITKLPILVKGVL--TAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 217 i~~lr~~~~~pv~vK~v~--~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
.+.+++..+.|+++.... +++. .+.|+|+|.++-.- ...+....++.+.++++.+ ++||++- ++.
T Consensus 107 ~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~--p~~~~~~~~~~i~~l~~~~--~~pvivK-~v~ 181 (299)
T cd02809 107 LEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDT--PVLGRRLTWDDLAWLRSQW--KGPLILK-GIL 181 (299)
T ss_pred HHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCC--CCCCCCCCHHHHHHHHHhc--CCCEEEe-ecC
Confidence 344444445688877653 3332 66899999875311 0001113567888888877 6898885 589
Q ss_pred CHHHHHHHHHhCcCEEEec
Q 017781 287 RGTDVFKALALGASGIFIG 305 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~ig 305 (366)
+.+++.++..+|||+|.+.
T Consensus 182 s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 182 TPEDALRAVDAGADGIVVS 200 (299)
T ss_pred CHHHHHHHHHCCCCEEEEc
Confidence 9999999999999999884
No 396
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=90.14 E-value=1.7 Score=42.36 Aligned_cols=102 Identities=24% Similarity=0.358 Sum_probs=66.2
Q ss_pred CceEEEeeecCCHH----HHHHHHHHHHHc---CCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccc
Q 017781 123 GIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (366)
Q Consensus 123 ~~~~~Qly~~~d~~----~~~~~l~ra~~~---G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (366)
+.-|+.|-+-.|+. ...+.+++++.. |+..+.+..|.|...+|..++.-..-+|
T Consensus 164 ~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmP------------------- 224 (326)
T PRK11840 164 GWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMP------------------- 224 (326)
T ss_pred CCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEee-------------------
Confidence 45688875533322 245667777777 9999888889888877776652100011
Q ss_pred cchhhHHHhhhccCCCCCHHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEE
Q 017781 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIV 248 (366)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~v 248 (366)
..+.+.+ +.+-.+.+.|+.+++..++||++- |+.+++| .+.|+|++-+
T Consensus 225 ----l~~pIGs-g~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~ 277 (326)
T PRK11840 225 ----LGAPIGS-GLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLM 277 (326)
T ss_pred ----ccccccC-CCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 0000110 111125678888888889999998 5678887 9999999965
No 397
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=90.05 E-value=2.9 Score=39.74 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCCEEEEe---ccCHHH----HHcC-CcEEEEcCCCccCCCCCcchHHHHHHHHHHc----CCCceEEEe
Q 017781 215 KDVKWLQTITKLPILVKG---VLTAED----VQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLD 282 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~---v~~~~d----~~aG-ad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~----~~~i~vi~~ 282 (366)
+.++.+++..+.|...|. +.+.++ .++| +|+|-+.+.+-.. ..+....+ +..+.+ ..++.++++
T Consensus 170 ~a~~~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~i~~S 245 (281)
T cd00516 170 AAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPEE---LDPAVLIL-KARAHLDGKGLPRVKIEAS 245 (281)
T ss_pred HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCChHH---HHHHHHHH-HHHHhhhhcCCCceEEEEe
Confidence 457777776543344442 234444 8888 9999887743211 11111112 111111 136789999
Q ss_pred cCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 283 GGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 283 GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
|||. .+.+.....+|.|.+++|+.+..
T Consensus 246 ggi~-~~~i~~~~~~gvd~~gvG~~~~~ 272 (281)
T cd00516 246 GGLD-EENIRAYAETGVDVFGVGTLLHS 272 (281)
T ss_pred CCCC-HHHHHHHHHcCCCEEEeCccccc
Confidence 9997 77777777799999999987643
No 398
>PLN02858 fructose-bisphosphate aldolase
Probab=89.90 E-value=41 Score=39.48 Aligned_cols=103 Identities=13% Similarity=0.113 Sum_probs=69.3
Q ss_pred HHcCCcEEEEcC---CCccCCCCCcchHHHHHHHHHHcC-CCceEEEecCCCC-HHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQ-GRIPVFLDGGVRR-GTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~-~~i~vi~~GGI~~-~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|.+-|+- ||-+......-.++.|.+|++.+. .++|+..=||=.. -+++.||+.+|..-|-|++-+..+..
T Consensus 1260 ~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~ai~~Gi~KiNi~T~~~~a~~ 1339 (1378)
T PLN02858 1260 DETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIKECIENGVRKFNVNTEVRTAYM 1339 (1378)
T ss_pred HhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHHHHcCCeEEEeCHHHHHHHH
Confidence 678999999874 553321111236789999999883 2589888774333 46788999999999999997755421
Q ss_pred ----hcC----HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017781 314 ----AEG----EKGVRRVLEMLREEFELAMALSGCR 341 (366)
Q Consensus 314 ----~~G----~~gv~~~~~~l~~el~~~m~~~G~~ 341 (366)
..+ ..-.....+.+++-.+..|+.+|..
T Consensus 1340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 1375 (1378)
T PLN02858 1340 EALSSPKKTDLIDVMSAAKEAMKAVVAEKLRLFGSA 1375 (1378)
T ss_pred HHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 111 1223445567778888888888854
No 399
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=89.70 E-value=14 Score=35.49 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=42.1
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE---EecCCCCH-HHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF---LDGGVRRG-TDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi---~~GGI~~~-~dv~kalalGAd~V~igr~~l~~ 311 (366)
.++|||+|.+-+ +.+.+.+.++.+.+ +.|++ ..+|- ++ -++...-++|.+.|..|...+++
T Consensus 171 ~~AGAD~vfi~g---------~~~~e~i~~~~~~i--~~Pl~~n~~~~~~-~p~~s~~eL~~lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 171 VEAGADMIFPEA---------LTSLEEFRQFAKAV--KVPLLANMTEFGK-TPLFTADELREAGYKMVIYPVTAFRA 235 (285)
T ss_pred HHcCCCEEEeCC---------CCCHHHHHHHHHhc--CCCEEEEeccCCC-CCCCCHHHHHHcCCcEEEEchHHHHH
Confidence 999999998732 34566777888777 46763 33442 22 24555567899999999877665
No 400
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=89.67 E-value=14 Score=35.65 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=41.4
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEE---EecCCCCH-HHHHHHHHhCcCEEEecHHHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF---LDGGVRRG-TDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi---~~GGI~~~-~dv~kalalGAd~V~igr~~l~~ 311 (366)
.++|||+|.+.+ +.+.+.+.++.+.+ ++|++ ..+|- ++ .++...-++|.+.|..|...+++
T Consensus 176 ~eAGAD~ifi~~---------~~~~~~i~~~~~~~--~~Pl~~n~~~~~~-~p~~s~~~L~~lGv~~v~~~~~~~~a 240 (292)
T PRK11320 176 VEAGADMIFPEA---------MTELEMYRRFADAV--KVPILANITEFGA-TPLFTTEELASAGVAMVLYPLSAFRA 240 (292)
T ss_pred HHcCCCEEEecC---------CCCHHHHHHHHHhc--CCCEEEEeccCCC-CCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 999999998733 34577777787777 56763 33442 22 23444556899999999877654
No 401
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=89.65 E-value=0.96 Score=42.44 Aligned_cols=37 Identities=19% Similarity=0.536 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEE
Q 017781 212 LSWKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIV 248 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~v 248 (366)
.+...++.+++..++||++- |+.+++| .+.|+|++-+
T Consensus 176 ~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~ 217 (267)
T CHL00162 176 QNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLL 217 (267)
T ss_pred CCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEee
Confidence 36678999999999999998 5678888 9999999965
No 402
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=89.59 E-value=20 Score=34.36 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=51.6
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------cCC--CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~~~--~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-...++-..+++-..+.|+-..+ + ++.+.+.||..+ ... .+.++++- .+.+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 45667776433333344445777788888866543 2 344567665432 222 35677764 34666
Q ss_pred HHHHHHHHHHcCCCEEEE
Q 017781 138 VAQLVRRAERAGFKAIAL 155 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~v 155 (366)
..++++.++++|++++++
T Consensus 88 ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLL 105 (296)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 777888899999999987
No 403
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=89.45 E-value=19 Score=33.90 Aligned_cols=94 Identities=12% Similarity=0.016 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcC-----CCccCC-CC-----CcchHHHHHHHHHHc---CCC
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSN-----HGARQL-DY-----VPATIMALEEVVKAT---QGR 276 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~-----~gg~~~-~~-----~~~~~~~l~~i~~~~---~~~ 276 (366)
+.++.|++. ++++-+=.+.+.+. .++|++.|...- ++..++ .. +.+.+..+.++.+.. +.+
T Consensus 130 ~A~~~L~~~-GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~ 208 (252)
T cd00439 130 PAIKDLIAA-GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKK 208 (252)
T ss_pred HHHHHHHHC-CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCC
Confidence 345555543 89999999999887 999999886431 121111 00 114445555555433 235
Q ss_pred ceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHh
Q 017781 277 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 277 i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l 312 (366)
..|++.+ +|+..++.+++ |+|.|-+.-..+..+
T Consensus 209 tkiL~AS-~r~~~~v~~l~--G~d~vT~~p~v~~~l 241 (252)
T cd00439 209 QRVLWAS-FSDTLYVAPLI--GCDTVTTMPDQALEA 241 (252)
T ss_pred CeEEEEe-eCCHHHHHHhh--CCCeeecCHHHHHHH
Confidence 6676655 99999998766 999999998877765
No 404
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=89.30 E-value=2.4 Score=41.01 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=58.8
Q ss_pred HHHHHHHHhcC--CCEEEEeccCH----HH----HHc---CCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---C-CCc
Q 017781 215 KDVKWLQTITK--LPILVKGVLTA----ED----VQA---GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRI 277 (366)
Q Consensus 215 ~~i~~lr~~~~--~pv~vK~v~~~----~d----~~a---Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~-~~i 277 (366)
+.++.+++..+ .|+++= +-+. .+ .++ ++|+|-++|.+++. | -..+.+.++++++ + .++
T Consensus 172 ~A~~~~~~~~p~~~~i~ve-vdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~~---G-~~~~~~~~~~~~l~~~g~~~~ 246 (302)
T cd01571 172 EAWKAFDETYPEDVPRIAL-IDTFNDEKEEALKAAKALGDKLDGVRLDTPSSRR---G-VFRYLIREVRWALDIRGYKHV 246 (302)
T ss_pred HHHHHHHHHCCCcCCeEEE-EeecCcchHHHHHHHHHhCCCCcEEEECCCCCCC---C-CHHHHHHHHHHHHHhCCCCCe
Confidence 34777777664 454443 3232 23 333 59999999865311 1 1333444444443 2 468
Q ss_pred eEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 278 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 278 ~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
.|+++||| +.+.+.+..+.|+|.+.+|+.+..
T Consensus 247 ~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~~ 278 (302)
T cd01571 247 KIFVSGGL-DEEDIKELEDVGVDAFGVGTAISK 278 (302)
T ss_pred EEEEeCCC-CHHHHHHHHHcCCCEEECCcccCC
Confidence 89999999 889999888899999999986643
No 405
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=89.23 E-value=3.6 Score=40.13 Aligned_cols=38 Identities=11% Similarity=0.398 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhcCCCEEEEe-ccCHHH-----HHcCCcEEEEc
Q 017781 212 LSWKDVKWLQTITKLPILVKG-VLTAED-----VQAGAAGIIVS 249 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~-v~~~~d-----~~aGad~I~vs 249 (366)
..|+.++++++.+++||+.=| +.++++ ...|+|+|.++
T Consensus 181 a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred cChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 468999999999999988876 468877 45799999773
No 406
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=89.20 E-value=19 Score=33.60 Aligned_cols=175 Identities=20% Similarity=0.179 Sum_probs=94.2
Q ss_pred hHHHHHHHHHcCCceec-CCC-----------CCCCHHHHhcc-------CCCceEEEee-ecCCHHHHHHHHHHHHHcC
Q 017781 90 EYATARAASAAGTIMTL-SSW-----------STSSVEEVAST-------GPGIRFFQLY-VYKDRNVVAQLVRRAERAG 149 (366)
Q Consensus 90 e~~la~aa~~~G~~~~v-s~~-----------~~~~~e~i~~~-------~~~~~~~Qly-~~~d~~~~~~~l~ra~~~G 149 (366)
+...|+.+++.|+..+. |+. ...+.+++... ...|...-+- ...+.+...+.+++..++|
T Consensus 18 D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G 97 (243)
T cd00377 18 DALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAG 97 (243)
T ss_pred CHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 66899999999988764 321 11355554332 2223332221 1235667778888888899
Q ss_pred CCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhc----C
Q 017781 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT----K 225 (366)
Q Consensus 150 ~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~----~ 225 (366)
+.++.+. |.. .|++... +.. ... .+.+.-.+.|+..++.. +
T Consensus 98 ~~gv~iE-D~~--------------~~k~~g~--~~~--------------~~~----~~~ee~~~ki~aa~~a~~~~~~ 142 (243)
T cd00377 98 AAGIHIE-DQV--------------GPKKCGH--HGG--------------KVL----VPIEEFVAKIKAARDARDDLPD 142 (243)
T ss_pred CEEEEEe-cCC--------------CCccccC--CCC--------------Cee----cCHHHHHHHHHHHHHHHhccCC
Confidence 9888763 211 1111000 000 000 00111123355555543 3
Q ss_pred CCEEEE-----ec-cCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEe--cCCCCHH
Q 017781 226 LPILVK-----GV-LTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD--GGVRRGT 289 (366)
Q Consensus 226 ~pv~vK-----~v-~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~--GGI~~~~ 289 (366)
.+|+.. .. .+.++ .++|||+|.+.+ +.+.+.+.++.+.. +.||++. .+-. ..
T Consensus 143 ~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~---------~~~~~~~~~~~~~~--~~Pl~~~~~~~~~-~~ 210 (243)
T cd00377 143 FVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEG---------LKDPEEIRAFAEAP--DVPLNVNMTPGGN-LL 210 (243)
T ss_pred eEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCC---------CCCHHHHHHHHhcC--CCCEEEEecCCCC-CC
Confidence 455555 11 34444 999999998743 22557777777776 5676654 2321 02
Q ss_pred HHHHHHHhCcCEEEecHHHHHH
Q 017781 290 DVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l~~ 311 (366)
.+-..-++|.+.|.+|...+++
T Consensus 211 ~~~~l~~lG~~~v~~~~~~~~~ 232 (243)
T cd00377 211 TVAELAELGVRRVSYGLALLRA 232 (243)
T ss_pred CHHHHHHCCCeEEEEChHHHHH
Confidence 3334446799999999877664
No 407
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=89.19 E-value=1.1 Score=45.28 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=59.9
Q ss_pred CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHH
Q 017781 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (366)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
.|.++.|-+ +...+.++++.++++|++++.++ |+-.. .-.-|+...-..| .++. ... .+
T Consensus 169 ~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~~-~~~id~~~~~~~p------~~~~-------~~~---~g- 227 (420)
T PRK08318 169 LPVIVKLTP--NITDIREPARAAKRGGADAVSLI-NTINS-ITGVDLDRMIPMP------IVNG-------KSS---HG- 227 (420)
T ss_pred CcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEe-cccCc-cccccccccCCCc------eecC-------CCC---cc-
Confidence 578888864 33336788888999999998754 32110 0000110000000 0000 000 00
Q ss_pred HhhhccCCCCCHHHHHHHHHhc---CCCEEE-EeccCHHH----HHcCCcEEEEcC
Q 017781 203 YVAGQIDRSLSWKDVKWLQTIT---KLPILV-KGVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 203 ~~~~~~d~~~~~~~i~~lr~~~---~~pv~v-K~v~~~~d----~~aGad~I~vs~ 250 (366)
.++.....+..|+.|.++++.+ ++||+- .|+.+.+| ..+|||+|.+..
T Consensus 228 g~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~t 283 (420)
T PRK08318 228 GYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCT 283 (420)
T ss_pred cccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeee
Confidence 0111011234789999999987 789774 46789888 889999998754
No 408
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=89.16 E-value=1.6 Score=41.61 Aligned_cols=151 Identities=25% Similarity=0.289 Sum_probs=83.1
Q ss_pred CCceEecccccccccCChhhHHHHHHHHHcCCcee-c--CCCC-C------C---CH----HHHhccCCCceEEEeeecC
Q 017781 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-L--SSWS-T------S---SV----EEVASTGPGIRFFQLYVYK 133 (366)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~-v--s~~~-~------~---~~----e~i~~~~~~~~~~Qly~~~ 133 (366)
..|++++ +.+. .++.=...++.+.+.|+.++ + |.-. . . .+ +.+++....|.++.+-...
T Consensus 98 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIAS-VGGS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEE-eccC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 4676654 3332 22323477888888887655 2 2110 0 0 11 2223333346777776666
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCC
Q 017781 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (366)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (366)
+.+.+.++++.++++|++++.++-..... ..+... ..|. .. ....+ ++........
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~~~~~~---~~~~~~--~~~~---~~------------~~~~g----~sg~~~~~~~ 229 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAINTISGR---VVDLKT--VGPG---PK------------RGTGG----LSGAPIRPLA 229 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCcc---ceeccc--Cccc---cC------------CCCCc----cCcHHHHHHH
Confidence 66678889999999999999886332110 000000 0000 00 00000 0000011235
Q ss_pred HHHHHHHHHhc--CCCEEEEe-ccCHHH----HHcCCcEEEEc
Q 017781 214 WKDVKWLQTIT--KLPILVKG-VLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 214 ~~~i~~lr~~~--~~pv~vK~-v~~~~d----~~aGad~I~vs 249 (366)
++.++++++.. ++||+.=| +.+.++ ..+|||+|.+.
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEc
Confidence 78899999988 79988775 467777 88999999764
No 409
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=89.12 E-value=4.1 Score=38.92 Aligned_cols=87 Identities=23% Similarity=0.293 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCCEEEEec-cCHHH--------HHcCCcEEEEcCC------CccCCCCCcc-hHHHHHHHHHHcCCCceE
Q 017781 216 DVKWLQTITKLPILVKGV-LTAED--------VQAGAAGIIVSNH------GARQLDYVPA-TIMALEEVVKATQGRIPV 279 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v-~~~~d--------~~aGad~I~vs~~------gg~~~~~~~~-~~~~l~~i~~~~~~~i~v 279 (366)
.+...++..+.|+++=.. .+.++ .++|+|+|.+.-+ +|.++...+. ..+.+..+++.+ ++||
T Consensus 80 ~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~Pv 157 (296)
T cd04740 80 ELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DVPV 157 (296)
T ss_pred HHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CCCE
Confidence 344444445789888764 34555 7889999998421 1222211121 224455555555 6787
Q ss_pred EE--ecCCCCHHHHHHHH-HhCcCEEEe
Q 017781 280 FL--DGGVRRGTDVFKAL-ALGASGIFI 304 (366)
Q Consensus 280 i~--~GGI~~~~dv~kal-alGAd~V~i 304 (366)
++ +..+.+..++++.+ ++|||++.+
T Consensus 158 ~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 158 IVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred EEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 75 33444566777655 589998865
No 410
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=88.58 E-value=23 Score=33.70 Aligned_cols=84 Identities=14% Similarity=-0.016 Sum_probs=49.7
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------cC-C-CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TG-P-GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~~-~-~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-.+.++-..+.+-+-+.|+-.++ + ++.+.+.+|..+ .. + .+.++++. ..+.+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHH
Confidence 35566776433333334445667777778866543 2 334456665432 22 2 34566653 234566
Q ss_pred HHHHHHHHHHcCCCEEEEe
Q 017781 138 VAQLVRRAERAGFKAIALT 156 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vt 156 (366)
+.++.+.+++.|++++++.
T Consensus 82 ~i~~a~~a~~~Gad~v~v~ 100 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVV 100 (285)
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 7778889999999999873
No 411
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=88.52 E-value=7.8 Score=38.23 Aligned_cols=103 Identities=16% Similarity=0.240 Sum_probs=71.0
Q ss_pred HHcCCcEEEEcC---CCccCCCCCc----chHHHHHHHHHHcCCCceEEEecCCCCH----------------------H
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG----------------------T 289 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~----------------------~ 289 (366)
.+.|+|.+-++. ||-+.....| -.++.|.+|++.++ ++|+..=||=..+ +
T Consensus 181 ~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~-~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e 259 (347)
T TIGR01521 181 KKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLP-DTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVE 259 (347)
T ss_pred HHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCC-CCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHH
Confidence 667899998874 4432211012 35788999998873 5999998876555 8
Q ss_pred HHHHHHHhCcCEEEecHHHHHHhhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 017781 290 DVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 342 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l~~l~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~~ 342 (366)
++.||+.+|..-|-+++-+-.+... .. ..-.....+.+++-.+..|..+|...
T Consensus 260 ~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~~ 325 (347)
T TIGR01521 260 EIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTAG 325 (347)
T ss_pred HHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999976543210 11 12234445667888888899988653
No 412
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=88.45 E-value=24 Score=33.74 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=51.9
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec-----CCCCCCCHHHHhc-------cCC--CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-----s~~~~~~~e~i~~-------~~~--~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-..-...++-..+.+..-+.|+...+ |++...+.||..+ ... -|.+.++. . +...
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~ 82 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTAT 82 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHH
Confidence 35566776433333344445788888888876543 2344566665432 222 35566664 3 6667
Q ss_pred HHHHHHHHHHcCCCEEEE
Q 017781 138 VAQLVRRAERAGFKAIAL 155 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~v 155 (366)
..+++++++++|++++.+
T Consensus 83 ~i~~a~~a~~~Gad~v~~ 100 (289)
T cd00951 83 AIAYAQAAEKAGADGILL 100 (289)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 778899999999999987
No 413
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=88.44 E-value=7.4 Score=38.42 Aligned_cols=103 Identities=13% Similarity=0.229 Sum_probs=70.6
Q ss_pred HHcCCcEEEEcC---CCccCCCCCc----chHHHHHHHHHHcCCCceEEEecCCCC----------------------HH
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRR----------------------GT 289 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~----------------------~~ 289 (366)
.+.|+|.+-++. ||-+.....| -.++.|.+|++.++ ++|+..=||=.. -+
T Consensus 183 ~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~-~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e 261 (347)
T PRK09196 183 KKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP-NTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVE 261 (347)
T ss_pred HHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC-CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHH
Confidence 678999998875 4432211112 36788999998873 599988886543 47
Q ss_pred HHHHHHHhCcCEEEecHHHHHHhhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 017781 290 DVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 342 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l~~l~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~~ 342 (366)
++.||+.+|..-|-+++-+..+... .. ..-.....+.+++..+..|+.+|...
T Consensus 262 ~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ 327 (347)
T PRK09196 262 EIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICKARYEAFGTAG 327 (347)
T ss_pred HHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 7899999999999999977554211 00 12233445677888888999998653
No 414
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=88.22 E-value=18 Score=32.16 Aligned_cols=86 Identities=15% Similarity=0.067 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHhcCCCEEEEec-cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCC
Q 017781 212 LSWKDVKWLQTITKLPILVKGV-LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 285 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~v-~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI 285 (366)
+..+.++++++.++.|+.+... .++++ .++|+|+|.++. +.. ....+.+..+++ . .+.+..+-.-
T Consensus 44 ~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh~--~~~----~~~~~~~~~~~~-~--~~~~g~~~~~ 114 (211)
T cd00429 44 FGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFHA--EAT----DHLHRTIQLIKE-L--GMKAGVALNP 114 (211)
T ss_pred cCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEECc--cch----hhHHHHHHHHHH-C--CCeEEEEecC
Confidence 4557888898876556654433 23333 899999998854 210 112233333332 2 4555554455
Q ss_pred CCHHHHHHHHHhCcCEEEecH
Q 017781 286 RRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~igr 306 (366)
.+..+..+.+..++|.+.++.
T Consensus 115 ~~~~~~~~~~~~~~d~i~~~~ 135 (211)
T cd00429 115 GTPVEVLEPYLDEVDLVLVMS 135 (211)
T ss_pred CCCHHHHHHHHhhCCEEEEEE
Confidence 556777788877799998874
No 415
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=88.03 E-value=2.7 Score=40.44 Aligned_cols=107 Identities=17% Similarity=0.219 Sum_probs=60.2
Q ss_pred CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHH
Q 017781 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (366)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
.|.++.|-+ +...+.++++.++++|+++++++ |+-. +.-..|+... . |. .. ++ ..+. .+
T Consensus 169 ~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~-~-~~-~~---~~-------~~~~---~g- 227 (299)
T cd02940 169 IPVIAKLTP--NITDIREIARAAKEGGADGVSAI-NTVN-SLMGVDLDGT-P-PA-PG---VE-------GKTT---YG- 227 (299)
T ss_pred CCeEEECCC--CchhHHHHHHHHHHcCCCEEEEe-cccc-cccccccccC-C-cc-cc---cc-------CCCC---cC-
Confidence 578888753 44456788889999999998764 2110 0000000000 0 00 00 00 0000 00
Q ss_pred HhhhccCCCCCHHHHHHHHHhc--CCCEEEE-eccCHHH----HHcCCcEEEEcC
Q 017781 203 YVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 203 ~~~~~~d~~~~~~~i~~lr~~~--~~pv~vK-~v~~~~d----~~aGad~I~vs~ 250 (366)
.++.....+.+|+.|.++++.+ ++||+.= ++.+.+| ..+|||+|.+..
T Consensus 228 g~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~t 282 (299)
T cd02940 228 GYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCT 282 (299)
T ss_pred cccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEce
Confidence 0111112335799999999999 7897766 4678888 789999998743
No 416
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=87.89 E-value=15 Score=33.68 Aligned_cols=40 Identities=23% Similarity=0.525 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEc
Q 017781 210 RSLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs 249 (366)
+...|+.++|+++...+|++.-|..+.+. .++|+|+|.|.
T Consensus 143 ~~~G~~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 143 PPLGLEGLREIRELVNIPVVAIGGINLENVPEVLEAGADGVAVV 186 (211)
T ss_pred CccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEEeh
Confidence 34578999999999889999998888876 99999999864
No 417
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=87.75 E-value=1.4 Score=42.94 Aligned_cols=100 Identities=21% Similarity=0.240 Sum_probs=60.4
Q ss_pred CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHH
Q 017781 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (366)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
.|.++.|-+..+.+.+.++++.++++|+++|.++-..... + ...-|. .. ... +.
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~-----~---~~~~~~---~~-------------~~~--gG 256 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISR-----P---GLLRSP---LA-------------NET--GG 256 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccc-----c---cccccc---cc-------------CCC--Cc
Confidence 4788888655555567888899999999999876322110 0 000000 00 000 00
Q ss_pred HhhhccCCCCCHHHHHHHHHhc--CCCEEEE-eccCHHH----HHcCCcEEEEc
Q 017781 203 YVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 203 ~~~~~~d~~~~~~~i~~lr~~~--~~pv~vK-~v~~~~d----~~aGad~I~vs 249 (366)
++........|+.++.+++.. ++||+.= ++.+.+| ..+|||.|.+.
T Consensus 257 -~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 257 -LSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred -cCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhcc
Confidence 000001124678899999988 6888754 5678888 77999999764
No 418
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=87.70 E-value=4.7 Score=39.12 Aligned_cols=37 Identities=19% Similarity=0.661 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHhcCCCEEEEe-ccCHHH-----HHcCCcEEEE
Q 017781 212 LSWKDVKWLQTITKLPILVKG-VLTAED-----VQAGAAGIIV 248 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~-v~~~~d-----~~aGad~I~v 248 (366)
..|+.++.+++.+++||+.=| +.++++ .+.|+|+|.+
T Consensus 179 ~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 179 ANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred hhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 468899999999999988875 467777 4789999987
No 419
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=87.53 E-value=28 Score=33.52 Aligned_cols=82 Identities=13% Similarity=0.068 Sum_probs=52.1
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec-----CCCCCCCHHHHhc-------cCC--CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-----s~~~~~~~e~i~~-------~~~--~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-...++-..+++...+.|+...+ |++...+.||..+ ... .+.+..+. . +.+.
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHH
Confidence 56677787543333344445777777788876543 3344566665432 222 35566663 3 6667
Q ss_pred HHHHHHHHHHcCCCEEEE
Q 017781 138 VAQLVRRAERAGFKAIAL 155 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~v 155 (366)
+.+++++++++|++++++
T Consensus 90 ~i~~~~~a~~~Gadav~~ 107 (303)
T PRK03620 90 AIEYAQAAERAGADGILL 107 (303)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 778889999999999987
No 420
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=87.41 E-value=7.6 Score=36.88 Aligned_cols=135 Identities=22% Similarity=0.240 Sum_probs=0.0
Q ss_pred EecccccccccCChhhHHHHHHHHHcCCceecCCCCCCCH--------------------HHHhccCCCc-----eEEEe
Q 017781 75 MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSV--------------------EEVASTGPGI-----RFFQL 129 (366)
Q Consensus 75 ~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~~~--------------------e~i~~~~~~~-----~~~Ql 129 (366)
++.|..+ +...|+.+.++|+.+++ +.++... ..|++..+.+ .-|-=
T Consensus 17 i~~~tay--------D~~sArl~e~aG~d~i~-vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~ 87 (264)
T PRK00311 17 IVMLTAY--------DYPFAKLFDEAGVDVIL-VGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGS 87 (264)
T ss_pred EEEEeCC--------CHHHHHHHHHcCCCEEE-ECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCC
Q ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
|.....+......+..+++|+.++-+ .|
T Consensus 88 y~~~~~~av~~a~r~~~~aGa~aVki----------------------------------------------------Ed 115 (264)
T PRK00311 88 YQASPEQALRNAGRLMKEAGAHAVKL----------------------------------------------------EG 115 (264)
T ss_pred ccCCHHHHHHHHHHHHHHhCCeEEEE----------------------------------------------------cC
Q ss_pred CCCCHHHHHHHHHhcCCCEE---------------EEeccCHHH------------HHcCCcEEEEcCCCccCCCCCcch
Q 017781 210 RSLSWKDVKWLQTITKLPIL---------------VKGVLTAED------------VQAGAAGIIVSNHGARQLDYVPAT 262 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~---------------vK~v~~~~d------------~~aGad~I~vs~~gg~~~~~~~~~ 262 (366)
.....+.|+.+++. ++||. .|....-++ .++|||+|++ -+++.
T Consensus 116 g~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~l---------E~v~~ 185 (264)
T PRK00311 116 GEEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVL---------ECVPA 185 (264)
T ss_pred cHHHHHHHHHHHHC-CCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEE---------cCCCH
Q ss_pred HHHHHHHHHHcCCCceEEEec
Q 017781 263 IMALEEVVKATQGRIPVFLDG 283 (366)
Q Consensus 263 ~~~l~~i~~~~~~~i~vi~~G 283 (366)
+...++.+.+ ++|+|.-|
T Consensus 186 -~~~~~i~~~l--~iP~igiG 203 (264)
T PRK00311 186 -ELAKEITEAL--SIPTIGIG 203 (264)
T ss_pred -HHHHHHHHhC--CCCEEEec
No 421
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=87.38 E-value=6 Score=37.33 Aligned_cols=135 Identities=22% Similarity=0.264 Sum_probs=0.0
Q ss_pred EecccccccccCChhhHHHHHHHHHcCCceecCCCCCC--------------------CHHHHhccCCCc-----eEEEe
Q 017781 75 MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS--------------------SVEEVASTGPGI-----RFFQL 129 (366)
Q Consensus 75 ~iApm~~~~l~~~~~e~~la~aa~~~G~~~~vs~~~~~--------------------~~e~i~~~~~~~-----~~~Ql 129 (366)
++.|..+ +...|+.+.++|+.+++ +.++. ....|++..+.| .-|-=
T Consensus 14 l~~~~ay--------D~~sA~l~e~aG~d~i~-vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~ 84 (254)
T cd06557 14 IVMLTAY--------DYPTAKLADEAGVDVIL-VGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGS 84 (254)
T ss_pred EEEEeCC--------CHHHHHHHHHcCCCEEE-ECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCc
Q ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccC
Q 017781 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (366)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (366)
|.....+......+..+++|+.++-| .|
T Consensus 85 y~~~~~~av~~a~r~~~~aGa~aVki----------------------------------------------------Ed 112 (254)
T cd06557 85 YQTSPEQALRNAARLMKEAGADAVKL----------------------------------------------------EG 112 (254)
T ss_pred ccCCHHHHHHHHHHHHHHhCCeEEEE----------------------------------------------------cC
Q ss_pred CCCCHHHHHHHHHhcCCCEE---------------EEeccCHHH------------HHcCCcEEEEcCCCccCCCCCcch
Q 017781 210 RSLSWKDVKWLQTITKLPIL---------------VKGVLTAED------------VQAGAAGIIVSNHGARQLDYVPAT 262 (366)
Q Consensus 210 ~~~~~~~i~~lr~~~~~pv~---------------vK~v~~~~d------------~~aGad~I~vs~~gg~~~~~~~~~ 262 (366)
.....+.|+.+++. ++||. .|....-++ .++|||+|++-+ .+
T Consensus 113 ~~~~~~~I~al~~a-gipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~----------v~ 181 (254)
T cd06557 113 GAEVAETIRALVDA-GIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLEC----------VP 181 (254)
T ss_pred cHHHHHHHHHHHHc-CCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcC----------CC
Q ss_pred HHHHHHHHHHcCCCceEEEec
Q 017781 263 IMALEEVVKATQGRIPVFLDG 283 (366)
Q Consensus 263 ~~~l~~i~~~~~~~i~vi~~G 283 (366)
-+...++.+.+ ++|+|.-|
T Consensus 182 ~~~~~~i~~~v--~iP~igiG 200 (254)
T cd06557 182 AELAKEITEAL--SIPTIGIG 200 (254)
T ss_pred HHHHHHHHHhC--CCCEEEec
No 422
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=87.24 E-value=5.5 Score=38.22 Aligned_cols=86 Identities=21% Similarity=0.248 Sum_probs=51.5
Q ss_pred HHHHHHhcCCCEEEEec-cCHHH--------HHcC-CcEEEEcC------CCccCCCCCc-chHHHHHHHHHHcCCCceE
Q 017781 217 VKWLQTITKLPILVKGV-LTAED--------VQAG-AAGIIVSN------HGARQLDYVP-ATIMALEEVVKATQGRIPV 279 (366)
Q Consensus 217 i~~lr~~~~~pv~vK~v-~~~~d--------~~aG-ad~I~vs~------~gg~~~~~~~-~~~~~l~~i~~~~~~~i~v 279 (366)
+...++.++.|+++=.. .+.++ .++| +|+|.+.- |||..+...+ ...+.+..+++.+ ++||
T Consensus 83 ~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv 160 (301)
T PRK07259 83 ELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPV 160 (301)
T ss_pred HHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCE
Confidence 33333445789888764 45665 7888 99998832 2232221111 2345566666655 6888
Q ss_pred EEec--CCCCHHHHHHHHH-hCcCEEEe
Q 017781 280 FLDG--GVRRGTDVFKALA-LGASGIFI 304 (366)
Q Consensus 280 i~~G--GI~~~~dv~kala-lGAd~V~i 304 (366)
++-- .+.+..++++.+. .|+|++.+
T Consensus 161 ~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 161 IVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred EEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 7743 3445566777665 89999865
No 423
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=87.15 E-value=9.8 Score=37.56 Aligned_cols=103 Identities=14% Similarity=0.268 Sum_probs=70.4
Q ss_pred HHcCCcEEEEcC---CCccCCCCCc----chHHHHHHHHHHcCCCceEEEecCCCCH----------------------H
Q 017781 239 VQAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG----------------------T 289 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~i~vi~~GGI~~~----------------------~ 289 (366)
.+.|+|.+-++. ||-+.....| -.++.|.+|++.++ ++|+..=||=..+ +
T Consensus 183 ~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~-~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e 261 (347)
T PRK13399 183 QRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP-NTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVE 261 (347)
T ss_pred HHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC-CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHH
Confidence 567899998874 4432211012 35778999998883 4999998876555 8
Q ss_pred HHHHHHHhCcCEEEecHHHHHHhhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 017781 290 DVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 342 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l~~l~~-------~G------~~gv~~~~~~l~~el~~~m~~~G~~~ 342 (366)
++.||+.+|..-|-+++-+..+... .. ..-.....+.+++-++..|+++|+..
T Consensus 262 ~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~l~gs~~ 327 (347)
T PRK13399 262 EIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGTAG 327 (347)
T ss_pred HHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999976543211 00 12233445667788888889998754
No 424
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=87.15 E-value=12 Score=36.64 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=76.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
+.|-+...++++.|.++|++++=.-.- +..++..... +.. .+...+.. .+....+... .-.
T Consensus 12 ~Gdl~~A~~lI~~A~~aGadaVKfQt~------~~~~~~~~~~-~~~-------~~~~~~~~--~~~~~~~~~~---~~~ 72 (329)
T TIGR03569 12 NGSLELAKKLVDAAAEAGADAVKFQTF------KAEDLVSKNA-PKA-------EYQKINTG--AEESQLEMLK---KLE 72 (329)
T ss_pred cCcHHHHHHHHHHHHHhCCCEEEeeeC------CHHHhhCccc-ccc-------cccccCCc--CCCcHHHHHH---HhC
Confidence 467888999999999999998754321 1111111000 000 00000000 0001111221 124
Q ss_pred CCHHHHHHHHH---hcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 212 LSWKDVKWLQT---ITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 212 ~~~~~i~~lr~---~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
++++..+++++ ..+++++. .+.+.++ .+.|++.+.|... ....+..|..+++. ..|||.+-|
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KIaS~-------~~~n~pLL~~~A~~---gkPvilStG 141 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLS-TPFDLESADFLEDLGVPRFKIPSG-------EITNAPLLKKIARF---GKPVILSTG 141 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEE-EeCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHhc---CCcEEEECC
Confidence 56665555554 45776543 3444443 7899999988431 22356677777653 689999999
Q ss_pred CCCHHHHHHHHH
Q 017781 285 VRRGTDVFKALA 296 (366)
Q Consensus 285 I~~~~dv~kala 296 (366)
..+-+++..|+.
T Consensus 142 matl~Ei~~Av~ 153 (329)
T TIGR03569 142 MATLEEIEAAVG 153 (329)
T ss_pred CCCHHHHHHHHH
Confidence 999999998875
No 425
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=86.59 E-value=5.2 Score=37.68 Aligned_cols=88 Identities=24% Similarity=0.322 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCC--cchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTITKLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.++.+-+ ++.||.+|-. .++++ ...|-+-|++.-+|- ..... ...+..++.+++ . .+|||+
T Consensus 106 ~~LL~a~g~-t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~-tf~y~r~~~D~~~ip~~k~-~--~~PVi~ 180 (258)
T TIGR01362 106 TDLLVAAAK-TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGT-SFGYNNLVVDMRSLPIMRE-L--GCPVIF 180 (258)
T ss_pred HHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCC-CcCCCCcccchhhhHHHHh-c--CCCEEE
Confidence 455666655 5899999965 57776 778888888876664 22111 224556666654 3 589998
Q ss_pred e---------------cCCCCHH--HHHHHHHhCcCEEEecH
Q 017781 282 D---------------GGVRRGT--DVFKALALGASGIFIGR 306 (366)
Q Consensus 282 ~---------------GGI~~~~--dv~kalalGAd~V~igr 306 (366)
| ||.|.-- -...|+++|||+++|-.
T Consensus 181 DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 181 DATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMET 222 (258)
T ss_pred eCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 7 5555432 23358889999999985
No 426
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=86.30 E-value=32 Score=32.97 Aligned_cols=84 Identities=14% Similarity=0.005 Sum_probs=51.3
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec-----CCCCCCCHHHHhc-------cCC--CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v-----s~~~~~~~e~i~~-------~~~--~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-...++-..+.+...+.|+-..+ |++.+.+.+|..+ ... .+.+.++.. .+.+.
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHH
Confidence 46677887543333334445777777778875432 3445567766432 122 345555542 45555
Q ss_pred HHHHHHHHHHcCCCEEEEe
Q 017781 138 VAQLVRRAERAGFKAIALT 156 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vt 156 (366)
..++++.+++.|++++++.
T Consensus 84 ai~~a~~A~~~Gad~v~v~ 102 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVI 102 (294)
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 6778888999999999873
No 427
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=86.17 E-value=6.9 Score=38.14 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHhc-CCCEEEEe-ccCHHH---HHcCCcEEEEc
Q 017781 212 LSWKDVKWLQTIT-KLPILVKG-VLTAED---VQAGAAGIIVS 249 (366)
Q Consensus 212 ~~~~~i~~lr~~~-~~pv~vK~-v~~~~d---~~aGad~I~vs 249 (366)
..|+.+.++++.. ++||+.=| +.+.+| .-.|+|+|-++
T Consensus 181 ~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~g~dgVMig 223 (318)
T TIGR00742 181 LRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLSHVDGVMVG 223 (318)
T ss_pred hhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHhCCCEEEEC
Confidence 5799999999987 79987654 678888 22399999763
No 428
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=85.78 E-value=35 Score=32.90 Aligned_cols=179 Identities=19% Similarity=0.221 Sum_probs=101.8
Q ss_pred CceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------cCC--CceEEEeeecCCHHH
Q 017781 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (366)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~~~--~~~~~Qly~~~d~~~ 137 (366)
.|.++.|+.-.+-...++-..+++-.-+.|+-.++ | +..+.+.||-.+ ... -|...+.. ..+.+.
T Consensus 9 i~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~e 87 (299)
T COG0329 9 IPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG-SNSTAE 87 (299)
T ss_pred eeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-CCcHHH
Confidence 56677787542324445556777777888866543 2 334567766432 222 34566654 345566
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHH
Q 017781 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (366)
Q Consensus 138 ~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (366)
..++.+.+++.|++++.+. +|.. + + ....-..+..
T Consensus 88 ai~lak~a~~~Gad~il~v--~PyY-~-----------k-------------------------------~~~~gl~~hf 122 (299)
T COG0329 88 AIELAKHAEKLGADGILVV--PPYY-N-----------K-------------------------------PSQEGLYAHF 122 (299)
T ss_pred HHHHHHHHHhcCCCEEEEe--CCCC-c-----------C-------------------------------CChHHHHHHH
Confidence 6788899999999999872 2211 0 0 0011123456
Q ss_pred HHHHHhcCCCEEEEecc-------CHHH-HHc-CCcEEE-EcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC
Q 017781 218 KWLQTITKLPILVKGVL-------TAED-VQA-GAAGII-VSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 287 (366)
Q Consensus 218 ~~lr~~~~~pv~vK~v~-------~~~d-~~a-Gad~I~-vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~ 287 (366)
+++.+.+++|+++=.+. +++. .+. ....|+ +=. .-..+..+.++....+.+-=++.+|+
T Consensus 123 ~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiKd--------~~gd~~~~~~~~~~~~~~~f~v~~G~--- 191 (299)
T COG0329 123 KAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKD--------SSGDLDRLEEIIAALGDRDFIVLSGD--- 191 (299)
T ss_pred HHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEe--------CCcCHHHHHHHHHhcCccCeeEEeCc---
Confidence 77777788998888763 3333 111 011221 111 11255666666666533212455553
Q ss_pred HHHHHHHHHhCcCEEEecHH
Q 017781 288 GTDVFKALALGASGIFIGRP 307 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~ 307 (366)
-+.++-++.+|++++.-+..
T Consensus 192 d~~~~~~~~~G~~G~is~~~ 211 (299)
T COG0329 192 DELALPALLLGADGVISVTA 211 (299)
T ss_pred hHHHHHHHhCCCCeEEeccc
Confidence 56678888899999988873
No 429
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=85.73 E-value=14 Score=31.75 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCEEEEeccC-H-H-------H-HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 215 KDVKWLQTITKLPILVKGVLT-A-E-------D-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~-~-~-------d-~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
+.++.+++..+.|+++....+ . + . .++|+|+|.+....+.. ..-..+.+.++++.+ .+++++..-.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~---~~~~~~~~~~i~~~~-~~~~v~~~~~ 122 (200)
T cd04722 47 EVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL---AREDLELIRELREAV-PDVKVVVKLS 122 (200)
T ss_pred cHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH---HHHHHHHHHHHHHhc-CCceEEEEEC
Confidence 456777777788988886521 1 1 2 78999999987643210 011345666666665 3577776654
Q ss_pred CCCHHHHHHHHHhCcCEEEecHHH
Q 017781 285 VRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~igr~~ 308 (366)
.....+...+...|+|.+.+...+
T Consensus 123 ~~~~~~~~~~~~~g~d~i~~~~~~ 146 (200)
T cd04722 123 PTGELAAAAAEEAGVDEVGLGNGG 146 (200)
T ss_pred CCCccchhhHHHcCCCEEEEcCCc
Confidence 433333222467899999998643
No 430
>PLN02979 glycolate oxidase
Probab=85.65 E-value=1.4 Score=43.65 Aligned_cols=44 Identities=25% Similarity=0.456 Sum_probs=38.0
Q ss_pred cchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 260 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 260 ~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
..+|+.|..+++.- ++|||+ .||.+++|+.+++.+|+|+|.++.
T Consensus 209 ~ltW~dl~wlr~~~--~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 209 TLSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred CCCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 34788899898866 799998 568999999999999999999874
No 431
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=85.65 E-value=6.1 Score=37.33 Aligned_cols=88 Identities=27% Similarity=0.330 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCC--cchHHHHHHHHHHcCCCceEEE
Q 017781 214 WKDVKWLQTITKLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFL 281 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~i~vi~ 281 (366)
.+.++++.+ ++.||.+|-. .++++ ...|-.-|++.-+|- ..... ...+..++.+++ . .+|||+
T Consensus 114 ~~LL~a~g~-t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~-tf~y~r~~~D~~~vp~~k~-~--~lPVi~ 188 (264)
T PRK05198 114 TDLLVAAAK-TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGT-SFGYNNLVVDMRGLPIMRE-T--GAPVIF 188 (264)
T ss_pred HHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCC-CcCCCCeeechhhhHHHhh-C--CCCEEE
Confidence 455666655 5899999965 67776 778888888876664 22111 124556665554 3 489999
Q ss_pred e---------------cCCCCHH--HHHHHHHhCcCEEEecH
Q 017781 282 D---------------GGVRRGT--DVFKALALGASGIFIGR 306 (366)
Q Consensus 282 ~---------------GGI~~~~--dv~kalalGAd~V~igr 306 (366)
| ||-|.-- -...|+++|||++++-.
T Consensus 189 DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEv 230 (264)
T PRK05198 189 DATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIET 230 (264)
T ss_pred eCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 7 4544422 23367889999999985
No 432
>PTZ00411 transaldolase-like protein; Provisional
Probab=85.61 E-value=7.5 Score=38.16 Aligned_cols=99 Identities=14% Similarity=0.268 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHh--cCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCC-------------CcchHHHHHHHHHH
Q 017781 212 LSWKDVKWLQTI--TKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKA 272 (366)
Q Consensus 212 ~~~~~i~~lr~~--~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~-------------~~~~~~~l~~i~~~ 272 (366)
.+|+-++.++.. -++++-+=.+.+... .++|++.|... -||-.|| +.+....+.++.+.
T Consensus 145 aT~eGi~Aa~~L~~eGI~~N~TlvFS~~QA~aaaeAGa~~ISPf--VGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~ 222 (333)
T PTZ00411 145 STWEGIQAAKALEKEGIHCNLTLLFSFAQAVACAQAGVTLISPF--VGRILDWYKKPEKAESYVGAQDPGVISVTKIYNY 222 (333)
T ss_pred CCHHHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCCEEEee--cchHHHhcccccccccccccCCchHHHHHHHHHH
Confidence 367655444433 288999888999877 99999887642 2332222 33445566666654
Q ss_pred cC--CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhhh
Q 017781 273 TQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 314 (366)
Q Consensus 273 ~~--~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~~ 314 (366)
.. +--..|....+|+..++.+ .+|+|.+-|.-.++..+..
T Consensus 223 ~k~~g~~T~Im~ASfRn~~qi~~--laG~D~lTi~p~ll~~L~~ 264 (333)
T PTZ00411 223 YKKHGYKTIVMGASFRNTGEILE--LAGCDKLTISPKLLEELAN 264 (333)
T ss_pred HHHcCCCeEEEecccCCHHHHHH--HHCCCEEeCCHHHHHHHHh
Confidence 42 2234555567999999997 3899999999888776643
No 433
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=85.57 E-value=43 Score=33.72 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHh--cCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCC-----C--------CcchHHHHHHHHHH
Q 017781 212 LSWKDVKWLQTI--TKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLD-----Y--------VPATIMALEEVVKA 272 (366)
Q Consensus 212 ~~~~~i~~lr~~--~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~-----~--------~~~~~~~l~~i~~~ 272 (366)
.+|+-++.++.. -++++-+=.+.+... .++|++.|... -||-.+ . .-|....+.++.+.
T Consensus 139 aT~eGi~A~~~L~~~GI~~n~TlvFS~~QA~aaaeAGa~~ISPf--VgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~ 216 (391)
T PRK12309 139 STWEGIKAAEVLEKEGIHCNLTLLFGFHQAIACAEAGVTLISPF--VGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNY 216 (391)
T ss_pred CCHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchhhhhhhhccCCCccccccchHHHHHHHHHHH
Confidence 356554444432 288988888999877 99999877642 233222 1 12244556666554
Q ss_pred cC---CCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHh
Q 017781 273 TQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 312 (366)
Q Consensus 273 ~~---~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l 312 (366)
.. .+..|++ ..+|+..++.+ .+|+|.+-|.-.++..+
T Consensus 217 ~~~~~~~T~Im~-ASfRn~~~v~~--laG~d~~Ti~p~ll~~L 256 (391)
T PRK12309 217 YKKFGYKTEVMG-ASFRNIGEIIE--LAGCDLLTISPKLLEQL 256 (391)
T ss_pred HHhcCCCcEEEe-cccCCHHHHHH--HHCCCeeeCCHHHHHHH
Confidence 42 2444555 45999999997 48999999998776654
No 434
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=85.57 E-value=34 Score=32.52 Aligned_cols=177 Identities=20% Similarity=0.198 Sum_probs=93.1
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCceec--C---CCCCCCHHHHhc-------cCC--CceEEEeeecCCHHHH
Q 017781 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNVV 138 (366)
Q Consensus 73 Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v--s---~~~~~~~e~i~~-------~~~--~~~~~Qly~~~d~~~~ 138 (366)
|.++.|+.-..-.+.++-..+++-.-+.|+...+ + ++.+.+.+|..+ ..+ .+.+.++- ..+.+.+
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~ 85 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEA 85 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHH
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHH
Confidence 4556666432222233345777777788876543 2 233456655422 222 35666654 3467777
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHH
Q 017781 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (366)
Q Consensus 139 ~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (366)
.++++.++++|++++.+.. |... + .+..-..+..+
T Consensus 86 i~~a~~a~~~Gad~v~v~~--P~~~------------~-------------------------------~s~~~l~~y~~ 120 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIP--PYYF------------K-------------------------------PSQEELIDYFR 120 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEE--STSS------------S-------------------------------CCHHHHHHHHH
T ss_pred HHHHHHHhhcCceEEEEec--cccc------------c-------------------------------chhhHHHHHHH
Confidence 8889999999999998742 2210 0 00000123455
Q ss_pred HHHHhcCCCEEEEecc-------CHHH----HHc-CCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 219 WLQTITKLPILVKGVL-------TAED----VQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 219 ~lr~~~~~pv~vK~v~-------~~~d----~~a-Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
.+.+.+++|+++=... +++. .+. .+-+|..+. ..+..+.++.+...+++.|+ +|
T Consensus 121 ~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~giK~s~----------~~~~~~~~~~~~~~~~~~v~-~G--- 186 (289)
T PF00701_consen 121 AIADATDLPIIIYNNPARTGNDLSPETLARLAKIPNVVGIKDSS----------GDLERLIQLLRAVGPDFSVF-CG--- 186 (289)
T ss_dssp HHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEEEESS----------SBHHHHHHHHHHSSTTSEEE-ES---
T ss_pred HHHhhcCCCEEEEECCCccccCCCHHHHHHHhcCCcEEEEEcCc----------hhHHHHHHHhhhcccCeeee-cc---
Confidence 5566667787776542 2222 221 111222211 13344555666655566544 45
Q ss_pred CHHHHHHHHHhCcCEEEecHHHH
Q 017781 287 RGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr~~l 309 (366)
....+..++.+|+++++.+.+-+
T Consensus 187 ~d~~~~~~l~~G~~G~is~~~n~ 209 (289)
T PF00701_consen 187 DDELLLPALAAGADGFISGLANV 209 (289)
T ss_dssp SGGGHHHHHHTTSSEEEESGGGT
T ss_pred ccccccccccccCCEEEEccccc
Confidence 45568899999999999887643
No 435
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=85.49 E-value=3.6 Score=39.44 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=29.8
Q ss_pred CHHHHHHHHHhcCCCEEEE-eccCHHH----HHcCCcEEEEc
Q 017781 213 SWKDVKWLQTITKLPILVK-GVLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK-~v~~~~d----~~aGad~I~vs 249 (366)
.++.+.++++..++||+.= ++.+++| .++|||+|.+.
T Consensus 222 ~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 222 ALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeec
Confidence 4577889999889998865 5678887 77999999763
No 436
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=85.21 E-value=17 Score=33.39 Aligned_cols=87 Identities=28% Similarity=0.244 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEec-C
Q 017781 214 WKDVKWLQTITKLPILVKGVLTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG-G 284 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G-G 284 (366)
.+.|+.+|+.++-.++|-..-+.+. .++|||+++|++.. -.+|+....+.++.. .+.+.++= |
T Consensus 44 ~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A------~~~TI~~~i~~A~~~--~~~v~iDl~~ 115 (217)
T COG0269 44 MRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAA------DDATIKKAIKVAKEY--GKEVQIDLIG 115 (217)
T ss_pred HHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecC------CHHHHHHHHHHHHHc--CCeEEEEeec
Confidence 4678899998855556554433221 99999999998732 224544333344444 34444443 6
Q ss_pred CCCHHHHHHHHH-hCcCEEEecHHH
Q 017781 285 VRRGTDVFKALA-LGASGIFIGRPV 308 (366)
Q Consensus 285 I~~~~dv~kala-lGAd~V~igr~~ 308 (366)
..++.+..+=+. +|.|.+.+=|..
T Consensus 116 ~~~~~~~~~~l~~~gvd~~~~H~g~ 140 (217)
T COG0269 116 VWDPEQRAKWLKELGVDQVILHRGR 140 (217)
T ss_pred CCCHHHHHHHHHHhCCCEEEEEecc
Confidence 999999999999 999999887654
No 437
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=85.15 E-value=2.6 Score=42.12 Aligned_cols=61 Identities=20% Similarity=0.319 Sum_probs=48.0
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.++|+|.|++.-.-|. ..-.++.++.+++..+ +++||+ |-+-|.+.+...++.|||.+=||
T Consensus 260 ~~aGvdvviLDSSqGn----S~~qiemik~iK~~yP-~l~Via-GNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 260 VQAGVDVVILDSSQGN----SIYQLEMIKYIKETYP-DLQIIA-GNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred hhcCCcEEEEecCCCc----chhHHHHHHHHHhhCC-Cceeec-cceeeHHHHHHHHHccCceeEec
Confidence 8999999998765442 2235677888877664 678887 88999999999999999986655
No 438
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=85.11 E-value=1.6 Score=43.62 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.+|+.|.++++.. ++||++- ||.+.+|+.+++.+|+|+|.+.
T Consensus 240 ~tW~~i~~lr~~~--~~pvivK-gV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 240 LTWEDLAFLREWT--DLPIVLK-GILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred CCHHHHHHHHHhc--CCCEEEe-cCCCHHHHHHHHHCCCCEEEEc
Confidence 4788999999877 7899885 7999999999999999999986
No 439
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=85.09 E-value=1.6 Score=43.72 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
.+|+.|.++++.. ++|||+ .||-+.+|+.+++.+|+|+|.++.
T Consensus 232 ltW~di~~lr~~~--~~pviv-KgV~s~~dA~~a~~~Gvd~I~Vs~ 274 (381)
T PRK11197 232 ISWKDLEWIRDFW--DGPMVI-KGILDPEDARDAVRFGADGIVVSN 274 (381)
T ss_pred CCHHHHHHHHHhC--CCCEEE-EecCCHHHHHHHHhCCCCEEEECC
Confidence 4788899999887 789888 669999999999999999998763
No 440
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=85.08 E-value=8.4 Score=35.06 Aligned_cols=38 Identities=18% Similarity=0.615 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHhcCCCEEEEec-cCHHH----HHc-CCcEEEEc
Q 017781 212 LSWKDVKWLQTITKLPILVKGV-LTAED----VQA-GAAGIIVS 249 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~v-~~~~d----~~a-Gad~I~vs 249 (366)
..|+.++.+++..++||+.=|. .+.++ .+. |+|+|.+.
T Consensus 170 ~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 170 ADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred CCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 4788899999999999998764 57777 555 89999763
No 441
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=84.99 E-value=7.1 Score=38.02 Aligned_cols=97 Identities=12% Similarity=0.204 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHhc--CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCC-------------CcchHHHHHHHHHH
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKA 272 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~-------------~~~~~~~l~~i~~~ 272 (366)
.+|+-++.++... ++++-+-.+.+.+. .++|++.|.. .-||-.|| .-+.+..+.++.+.
T Consensus 133 aT~eGi~A~~~L~~~GI~vn~TlvFS~~Qa~~aa~AGa~~ISP--fVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~ 210 (313)
T cd00957 133 ATWEGIQAAKQLEKEGIHCNLTLLFSFAQAVACAEAGVTLISP--FVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNY 210 (313)
T ss_pred CCHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEe--ecchHHHhhhhccccccCCccCCcHHHHHHHHHHH
Confidence 4666555444332 88999989999877 9999987763 22332222 12345556666554
Q ss_pred c---CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 273 T---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 273 ~---~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
. +.+..|+ ...+|+..++.+ .+|+|.+-+.-.++..|.
T Consensus 211 ~~~~~~~T~vm-aASfRn~~~v~~--laG~d~~Ti~p~ll~~L~ 251 (313)
T cd00957 211 YKKFGYKTKVM-GASFRNIGQILA--LAGCDYLTISPALLEELK 251 (313)
T ss_pred HHHcCCCcEEE-ecccCCHHHHHH--HhCCCeEEcCHHHHHHHH
Confidence 4 2244455 456999999997 579999999988887764
No 442
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=84.97 E-value=4.9 Score=39.58 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=40.2
Q ss_pred cCHHH-HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcC-CCceEEE----ec-CCCCHH------HHH-----HHH
Q 017781 234 LTAED-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVFL----DG-GVRRGT------DVF-----KAL 295 (366)
Q Consensus 234 ~~~~d-~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~-~~i~vi~----~G-GI~~~~------dv~-----kal 295 (366)
.++++ .+.|||+|.++-.-|.. .....++.+.++.+... -.+|+++ -| .|.+.. |.+ -+.
T Consensus 150 ~sVedAlrLGAdAV~~tvy~Gs~--~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaa 227 (348)
T PRK09250 150 ASVEDALRLGAVAVGATIYFGSE--ESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAA 227 (348)
T ss_pred ecHHHHHHCCCCEEEEEEecCCH--HHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHH
Confidence 36777 99999999987654411 11223444444444332 2688776 22 233332 333 344
Q ss_pred HhCcCEEEecH
Q 017781 296 ALGASGIFIGR 306 (366)
Q Consensus 296 alGAd~V~igr 306 (366)
++|||.|=+--
T Consensus 228 ELGADIVKv~y 238 (348)
T PRK09250 228 TIGADIIKQKL 238 (348)
T ss_pred HHcCCEEEecC
Confidence 58999997653
No 443
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=84.78 E-value=6.1 Score=36.40 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHH-HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHH
Q 017781 215 KDVKWLQTITKLPILVKGVLTAED-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 293 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~~~d-~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k 293 (366)
+.+..+.+.+++|++|-. +++- .+.|+|+|.+...- . .+.++++.++ .--+|+.+-.++-.++.+
T Consensus 61 ~~l~~l~~~~gv~liINd--~~dlA~~~~adGVHLg~~d--------~---~~~~~r~~~~-~~~iiG~s~~~s~~~a~~ 126 (221)
T PRK06512 61 EKLVPVIQEAGAAALIAG--DSRIAGRVKADGLHIEGNL--------A---ALAEAIEKHA-PKMIVGFGNLRDRHGAME 126 (221)
T ss_pred HHHHHHHHHhCCEEEEeC--HHHHHHHhCCCEEEECccc--------c---CHHHHHHhcC-CCCEEEecCCCCHHHHHH
Confidence 345666666788988753 1222 88999999774321 0 1345555543 223555455678888999
Q ss_pred HHHhCcCEEEecHH
Q 017781 294 ALALGASGIFIGRP 307 (366)
Q Consensus 294 alalGAd~V~igr~ 307 (366)
|..+|||.|.+|--
T Consensus 127 A~~~gaDYv~~Gpv 140 (221)
T PRK06512 127 IGELRPDYLFFGKL 140 (221)
T ss_pred hhhcCCCEEEECCC
Confidence 99999999999953
No 444
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=84.76 E-value=4.3 Score=39.13 Aligned_cols=78 Identities=22% Similarity=0.393 Sum_probs=52.0
Q ss_pred CCCEEEEeccCHHH----HHcCCcEEEEcCCCc--c---CCCCCcchH----HHHHHHHHHcCCCceEEEec--CCCCHH
Q 017781 225 KLPILVKGVLTAED----VQAGAAGIIVSNHGA--R---QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGT 289 (366)
Q Consensus 225 ~~pv~vK~v~~~~d----~~aGad~I~vs~~gg--~---~~~~~~~~~----~~l~~i~~~~~~~i~vi~~G--GI~~~~ 289 (366)
+.|+++=++.+.-. .++|.++|.+|+++= . ..|.+.-++ +.+.+|.+.+ ++||++|. |..++.
T Consensus 16 ~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~ 93 (292)
T PRK11320 16 EKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC--DLPLLVDIDTGFGGAF 93 (292)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHH
Confidence 45777766655544 899999999987541 1 134444343 3344455555 79999986 777888
Q ss_pred HH---H-HHHHhCcCEEEe
Q 017781 290 DV---F-KALALGASGIFI 304 (366)
Q Consensus 290 dv---~-kalalGAd~V~i 304 (366)
.+ + +....||.++.|
T Consensus 94 ~v~r~V~~~~~aGaagi~I 112 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHI 112 (292)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 86 3 444589988888
No 445
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=84.72 E-value=1.8 Score=38.17 Aligned_cols=141 Identities=18% Similarity=0.227 Sum_probs=84.0
Q ss_pred ceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHH
Q 017781 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (366)
Q Consensus 124 ~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (366)
.+.|-|+ .+-..+.+.++.+++.| +.+.+++|. .+|..- ..-..++
T Consensus 25 ~~vflL~--~~i~~ik~ivk~lK~~g-K~vfiHvDL----------v~Gl~~---------------------~e~~i~f 70 (181)
T COG1954 25 QYVFLLT--GHILNIKEIVKKLKNRG-KTVFIHVDL----------VEGLSN---------------------DEVAIEF 70 (181)
T ss_pred eEEEEEe--chhhhHHHHHHHHHhCC-cEEEEEeHH----------hcccCC---------------------chHHHHH
Confidence 3555555 45666777888887776 455678873 333210 0011122
Q ss_pred hhhcc--CCCCCH--HHHHHHHHhcCCCEEEEec----cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHH
Q 017781 204 VAGQI--DRSLSW--KDVKWLQTITKLPILVKGV----LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVV 270 (366)
Q Consensus 204 ~~~~~--d~~~~~--~~i~~lr~~~~~pv~vK~v----~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~ 270 (366)
+.... |+-.+. ..+...|+. +++.+-..- ...+. .+.++|+|-+-- + -....+.++.
T Consensus 71 i~~~~~pdGIISTk~~~i~~Akk~-~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvLP-------G--v~Pkvi~~i~ 140 (181)
T COG1954 71 IKEVIKPDGIISTKSNVIKKAKKL-GILAIQRLFILDSIALEKGIKQIEKSEPDFIEVLP-------G--VMPKVIKEIT 140 (181)
T ss_pred HHHhccCCeeEEccHHHHHHHHHc-CCceeeeeeeecHHHHHHHHHHHHHcCCCEEEEcC-------c--ccHHHHHHHH
Confidence 22222 222222 345555553 566555532 12222 778999997622 2 1335666776
Q ss_pred HHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHH
Q 017781 271 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 271 ~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 310 (366)
+.. .+|||+-|=|++-+|+..||..||-+|.-..--+|
T Consensus 141 ~~t--~~piIAGGLi~t~Eev~~Al~aGA~avSTs~~~lW 178 (181)
T COG1954 141 EKT--HIPIIAGGLIETEEEVREALKAGAVAVSTSNTKLW 178 (181)
T ss_pred Hhc--CCCEEeccccccHHHHHHHHHhCcEEEeecchhhc
Confidence 666 79999999999999999999999999876544444
No 446
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=84.72 E-value=3.7 Score=38.80 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=49.7
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~ 308 (366)
.++||++|.|..... .-...++.|..+++.+ ++||+.--=|..+.++..+..+|||+|.+.-..
T Consensus 80 ~~~GA~aisvlte~~----~f~g~~~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 80 EAGGAACLSVLTDER----FFQGSLEYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAA 143 (260)
T ss_pred HhCCCeEEEEecccc----cCCCCHHHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEecc
Confidence 789999998754221 0112367888888887 899998777888999999999999999988544
No 447
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=84.60 E-value=8.8 Score=38.22 Aligned_cols=101 Identities=19% Similarity=0.158 Sum_probs=59.1
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEec-----cCHHH--------HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcC
Q 017781 209 DRSLSWKDVKWLQTITKLPILVKGV-----LTAED--------VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQ 274 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~pv~vK~v-----~~~~d--------~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~ 274 (366)
-|.+..+-++++....+.|++.-.+ ++++. .+.|+|+|...+..|.+...... ...++.++.+...
T Consensus 113 GP~fGi~g~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~ 192 (367)
T cd08205 113 GPRFGIEGLRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRAN 192 (367)
T ss_pred CCCCCchhHHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHH
Confidence 3566777788888877888765432 44443 88999999877665544322211 2233334433332
Q ss_pred ---CC-ceEEEecCCCCHHHHH----HHHHhCcCEEEecHHHHH
Q 017781 275 ---GR-IPVFLDGGVRRGTDVF----KALALGASGIFIGRPVVY 310 (366)
Q Consensus 275 ---~~-i~vi~~GGI~~~~dv~----kalalGAd~V~igr~~l~ 310 (366)
++ .+++++.. .+..++. .+..+|||+||+--++.+
T Consensus 193 ~~TG~~~~y~~nit-~~~~e~i~~a~~a~~~Gad~vmv~~~~~g 235 (367)
T cd08205 193 EETGRKTLYAPNIT-GDPDELRRRADRAVEAGANALLINPNLVG 235 (367)
T ss_pred HhhCCcceEEEEcC-CCHHHHHHHHHHHHHcCCCEEEEeccccc
Confidence 33 33343332 3335553 345589999999987643
No 448
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=84.35 E-value=17 Score=35.75 Aligned_cols=174 Identities=17% Similarity=0.185 Sum_probs=95.4
Q ss_pred hHHHHHHHHHcC-CceecCCC-CC--CCHHHHhccCC---CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 017781 90 EYATARAASAAG-TIMTLSSW-ST--SSVEEVASTGP---GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (366)
Q Consensus 90 e~~la~aa~~~G-~~~~vs~~-~~--~~~e~i~~~~~---~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~ 162 (366)
=++.|+.|++.| ..+++.+. -. ..++++.+... ......+...-. ....+.+++++++|.+...-++++..
T Consensus 89 Ile~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG-~l~~eq~~~L~~aGvd~ynhNLeTs~- 166 (335)
T COG0502 89 ILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLG-MLTEEQAEKLADAGVDRYNHNLETSP- 166 (335)
T ss_pred HHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccC-CCCHHHHHHHHHcChhheecccccCH-
Confidence 358999999999 78876433 22 44455443221 001111111101 23345667788889888877777521
Q ss_pred cchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHH----HHHHHHhcCCCEEEEec----c
Q 017781 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD----VKWLQTITKLPILVKGV----L 234 (366)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----i~~lr~~~~~pv~vK~v----~ 234 (366)
++.. ...+..+|++ ++.+|+. ++-+-..++ -
T Consensus 167 ---------------------------------------~~y~-~I~tt~t~edR~~tl~~vk~~-Gi~vcsGgI~GlGE 205 (335)
T COG0502 167 ---------------------------------------EFYE-NIITTRTYEDRLNTLENVREA-GIEVCSGGIVGLGE 205 (335)
T ss_pred ---------------------------------------HHHc-ccCCCCCHHHHHHHHHHHHHc-CCccccceEecCCC
Confidence 0000 0123345653 5555553 444444433 3
Q ss_pred CHHH--------HHcC-CcEEEEcC---CCccCCCC--CcchHHHHHHHHHH--cCCCceEEEecCCCCHHH--HHHHHH
Q 017781 235 TAED--------VQAG-AAGIIVSN---HGARQLDY--VPATIMALEEVVKA--TQGRIPVFLDGGVRRGTD--VFKALA 296 (366)
Q Consensus 235 ~~~d--------~~aG-ad~I~vs~---~gg~~~~~--~~~~~~~l~~i~~~--~~~~i~vi~~GGI~~~~d--v~kala 296 (366)
+.+| .+.. +|.|-+-. +-|+.+.. ..+.++.++-|+-+ .-.+.-|.++||..+-.. ...++.
T Consensus 206 s~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~ 285 (335)
T COG0502 206 TVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFM 285 (335)
T ss_pred CHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEccCCcccccHHHHHHHHH
Confidence 5555 5556 88887642 34554432 34566776655432 223566777787665444 466777
Q ss_pred hCcCEEEecH
Q 017781 297 LGASGIFIGR 306 (366)
Q Consensus 297 lGAd~V~igr 306 (366)
+||+.+++|-
T Consensus 286 aGansi~~g~ 295 (335)
T COG0502 286 AGANSIFVGD 295 (335)
T ss_pred hccceeeecc
Confidence 8999999997
No 449
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=84.32 E-value=4.5 Score=38.18 Aligned_cols=65 Identities=25% Similarity=0.361 Sum_probs=45.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 309 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l 309 (366)
.++||++|.|-.-. .+-..+++.|..+++.+ ++||+.-==|-++.++.+|-++|||+|.+=-.+|
T Consensus 78 ~~~GA~aiSVlTe~----~~F~Gs~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L 142 (254)
T PF00218_consen 78 EEAGAAAISVLTEP----KFFGGSLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAIL 142 (254)
T ss_dssp HHTT-SEEEEE--S----CCCHHHHHHHHHHHHHS--SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGS
T ss_pred HhcCCCEEEEECCC----CCCCCCHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhC
Confidence 88999999885421 11224778888898888 7999998889999999999999999998865543
No 450
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=83.87 E-value=1.9 Score=42.90 Aligned_cols=43 Identities=26% Similarity=0.465 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr 306 (366)
.+|+.|..+++.- ++|||+ .||.+++|+.+++.+|+|+|.+..
T Consensus 211 ~tW~di~wlr~~~--~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 211 LSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred CCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 4788899888876 799998 558999999999999999999874
No 451
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=83.68 E-value=8.6 Score=35.88 Aligned_cols=79 Identities=29% Similarity=0.351 Sum_probs=49.7
Q ss_pred CCCEEEEeccCHHH----HHcCCcEEEEcCCCc----cCCCCCcchH----HHHHHHHHHcCCCceEEEec--CCCC-HH
Q 017781 225 KLPILVKGVLTAED----VQAGAAGIIVSNHGA----RQLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRR-GT 289 (366)
Q Consensus 225 ~~pv~vK~v~~~~d----~~aGad~I~vs~~gg----~~~~~~~~~~----~~l~~i~~~~~~~i~vi~~G--GI~~-~~ 289 (366)
+.|+++=++-+.-. .++|.++|.+|+++- ...|.+.-++ +.+.+|.+.+ ++||++|+ |..+ +.
T Consensus 8 ~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~--~iPv~vD~d~GyG~~~~ 85 (238)
T PF13714_consen 8 GKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV--SIPVIVDADTGYGNDPE 85 (238)
T ss_dssp SSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS--SSEEEEE-TTTSSSSHH
T ss_pred CCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh--cCcEEEEcccccCchhH
Confidence 36888888876655 899999999987431 1245454444 3455666666 89999987 6655 43
Q ss_pred HH----HHHHHhCcCEEEec
Q 017781 290 DV----FKALALGASGIFIG 305 (366)
Q Consensus 290 dv----~kalalGAd~V~ig 305 (366)
++ .+...+||.++.|-
T Consensus 86 ~v~~tv~~~~~aG~agi~IE 105 (238)
T PF13714_consen 86 NVARTVRELERAGAAGINIE 105 (238)
T ss_dssp HHHHHHHHHHHCT-SEEEEE
T ss_pred HHHHHHHHHHHcCCcEEEee
Confidence 43 34556899999885
No 452
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=83.68 E-value=4.7 Score=37.71 Aligned_cols=80 Identities=16% Similarity=0.107 Sum_probs=50.0
Q ss_pred CCCEEEEeccCHHH----HHcCCcEEEEcCCCccC----CCCCcchHHH----HHHHHHHcCCCceEEEecCCCCH---H
Q 017781 225 KLPILVKGVLTAED----VQAGAAGIIVSNHGARQ----LDYVPATIMA----LEEVVKATQGRIPVFLDGGVRRG---T 289 (366)
Q Consensus 225 ~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~----~~~~~~~~~~----l~~i~~~~~~~i~vi~~GGI~~~---~ 289 (366)
+.|+++=++.+.-. .++|+|.|.++..++.. .|.+.-+++. +..+++.. ...||++|.---++ +
T Consensus 11 ~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~-~~~pviaD~~~G~g~~~~ 89 (240)
T cd06556 11 KERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGA-PLALIVADLPFGAYGAPT 89 (240)
T ss_pred CCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhC-CCCCEEEeCCCCCCcCHH
Confidence 46777766655544 88899999999864421 2333334433 33333333 14799999754433 5
Q ss_pred HH----HHHHHhCcCEEEec
Q 017781 290 DV----FKALALGASGIFIG 305 (366)
Q Consensus 290 dv----~kalalGAd~V~ig 305 (366)
++ .+.+..||++|-|-
T Consensus 90 ~~~~~~~~l~~aGa~gv~iE 109 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKIE 109 (240)
T ss_pred HHHHHHHHHHHcCCcEEEEc
Confidence 54 45667899999993
No 453
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=83.67 E-value=4.9 Score=38.57 Aligned_cols=79 Identities=20% Similarity=0.308 Sum_probs=52.3
Q ss_pred CCCEEEEeccCHHH----HHcCCcEEEEcCCCcc----CCCCCcchH----HHHHHHHHHcCCCceEEEec--CCCCHHH
Q 017781 225 KLPILVKGVLTAED----VQAGAAGIIVSNHGAR----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGTD 290 (366)
Q Consensus 225 ~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~----~~~~~~~~~----~~l~~i~~~~~~~i~vi~~G--GI~~~~d 290 (366)
+.|+++=++.+.-. .++|.++|.+|+++-. ..|.+.-++ +.+.+|.+.+ ++||++|. |..++.+
T Consensus 12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~ 89 (285)
T TIGR02317 12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT--DLPLLVDADTGFGEAFN 89 (285)
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHH
Confidence 45777666655544 8999999999985421 134333333 3445555555 79999986 7777888
Q ss_pred H---H-HHHHhCcCEEEec
Q 017781 291 V---F-KALALGASGIFIG 305 (366)
Q Consensus 291 v---~-kalalGAd~V~ig 305 (366)
+ + +...+||.++.|-
T Consensus 90 v~~tv~~~~~aG~agi~IE 108 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHIE 108 (285)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 6 3 4445899998884
No 454
>PLN02334 ribulose-phosphate 3-epimerase
Probab=83.47 E-value=36 Score=31.20 Aligned_cols=87 Identities=14% Similarity=0.041 Sum_probs=51.3
Q ss_pred CHHHHHHHHHhcCCCEEEEec-cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 213 SWKDVKWLQTITKLPILVKGV-LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
..+.++++|+.++.|+-+-.. .++++ .++|||+|.++. + | +........+..+++. .+-+-.+-.-.
T Consensus 53 g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~--~-q-~~~d~~~~~~~~i~~~---g~~iGls~~~~ 125 (229)
T PLN02334 53 GPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHI--E-Q-ASTIHLHRLIQQIKSA---GMKAGVVLNPG 125 (229)
T ss_pred CHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEee--c-c-ccchhHHHHHHHHHHC---CCeEEEEECCC
Confidence 447889999887777655544 34554 899999998743 3 1 0011223444444432 23232222233
Q ss_pred CHHHHHHHHHhC--cCEEEecH
Q 017781 287 RGTDVFKALALG--ASGIFIGR 306 (366)
Q Consensus 287 ~~~dv~kalalG--Ad~V~igr 306 (366)
|..+.++.+..+ +|.+++|.
T Consensus 126 t~~~~~~~~~~~~~~Dyi~~~~ 147 (229)
T PLN02334 126 TPVEAVEPVVEKGLVDMVLVMS 147 (229)
T ss_pred CCHHHHHHHHhccCCCEEEEEE
Confidence 667777766544 99999985
No 455
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=83.45 E-value=10 Score=37.47 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=58.2
Q ss_pred HHHHHHHHHhc-CCCEEEEec------cCHHH-----HHcCCcEEEEcCCCccC--CCCCcchH----HHHHHHHHHcCC
Q 017781 214 WKDVKWLQTIT-KLPILVKGV------LTAED-----VQAGAAGIIVSNHGARQ--LDYVPATI----MALEEVVKATQG 275 (366)
Q Consensus 214 ~~~i~~lr~~~-~~pv~vK~v------~~~~d-----~~aGad~I~vs~~gg~~--~~~~~~~~----~~l~~i~~~~~~ 275 (366)
.+.++.+|+.. +.|+++=.. .+.++ ...++|++.++-.-... ...+...+ +.+.++++.+
T Consensus 108 ~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~-- 185 (352)
T PRK05437 108 ADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSAL-- 185 (352)
T ss_pred HHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhh--
Confidence 35577888877 788877432 12343 56789999885322111 11222233 5677777766
Q ss_pred CceEEE--ecCCCCHHHHHHHHHhCcCEEEecH
Q 017781 276 RIPVFL--DGGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 276 ~i~vi~--~GGI~~~~dv~kalalGAd~V~igr 306 (366)
++||++ .|.-.+.+++.+....|+|++.++.
T Consensus 186 ~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 186 PVPVIVKEVGFGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence 789987 4544667777777789999999853
No 456
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=83.27 E-value=12 Score=36.62 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=57.5
Q ss_pred CHHHHHHHHHhcC-CCEEEEecc------CHHH-----HHcCCcEEEEcCCCcc--CCCCCcchH----HHHHHHHHHcC
Q 017781 213 SWKDVKWLQTITK-LPILVKGVL------TAED-----VQAGAAGIIVSNHGAR--QLDYVPATI----MALEEVVKATQ 274 (366)
Q Consensus 213 ~~~~i~~lr~~~~-~pv~vK~v~------~~~d-----~~aGad~I~vs~~gg~--~~~~~~~~~----~~l~~i~~~~~ 274 (366)
.|+.++.+|+..+ .|+++-... ++++ ..+++|++.++-.-.. ....+...+ +.|..+++.+
T Consensus 99 ~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~- 177 (326)
T cd02811 99 LAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKAL- 177 (326)
T ss_pred hhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhc-
Confidence 4566778888775 887665321 4444 5678999988532110 011122233 5677777766
Q ss_pred CCceEEEe--cCCCCHHHHHHHHHhCcCEEEecH
Q 017781 275 GRIPVFLD--GGVRRGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 275 ~~i~vi~~--GGI~~~~dv~kalalGAd~V~igr 306 (366)
++||++= |--.+.+++.+....|+|++.++.
T Consensus 178 -~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 178 -SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred -CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 7899883 333667777777779999999864
No 457
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=83.20 E-value=6.5 Score=38.21 Aligned_cols=135 Identities=21% Similarity=0.330 Sum_probs=75.7
Q ss_pred CCceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCcccccc-ccccccCCCccccchhh
Q 017781 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN-FQGLDLGKMDEANDSGL 200 (366)
Q Consensus 122 ~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~ 200 (366)
..|.++.|-+ +.+.+.++.+.++++|+++++++ |+-..+-+ -|.... .| ..++ ..+++
T Consensus 161 ~~Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl~~~-NT~~~~~~-id~~~~--~~---~~~~~~GGLS------------ 219 (310)
T COG0167 161 KVPVFVKLAP--NITDIDEIAKAAEEAGADGLIAI-NTTKSGMK-IDLETK--KP---VLANETGGLS------------ 219 (310)
T ss_pred cCceEEEeCC--CHHHHHHHHHHHHHcCCcEEEEE-eecccccc-cccccc--cc---ccCcCCCCcC------------
Confidence 3678888875 77888999999999999998864 33211100 011100 00 0000 00000
Q ss_pred HHHhhhccCCCCCHHHHHHHHHhcC--CCEEEE-eccCHHH----HHcCCcEEEEcCCCccCCCCCcchH-HHHHHHHHH
Q 017781 201 AAYVAGQIDRSLSWKDVKWLQTITK--LPILVK-GVLTAED----VQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKA 272 (366)
Q Consensus 201 ~~~~~~~~d~~~~~~~i~~lr~~~~--~pv~vK-~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~-~~l~~i~~~ 272 (366)
+..+ .+...+.|+++++.++ +|||-= |+.+.+| ..+||+.|.|...- +..||.-. +....+.++
T Consensus 220 G~~i-----kp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal---~~~Gp~i~~~I~~~l~~~ 291 (310)
T COG0167 220 GPPL-----KPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTAL---IYKGPGIVKEIIKGLARW 291 (310)
T ss_pred cccc-----hHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeee---eeeCchHHHHHHHHHHHH
Confidence 0011 1235678888888876 886644 6789988 99999999875421 22344433 233344433
Q ss_pred cCCCceEEEecCCCCHHHHH
Q 017781 273 TQGRIPVFLDGGVRRGTDVF 292 (366)
Q Consensus 273 ~~~~i~vi~~GGI~~~~dv~ 292 (366)
+. .-|+.+-+|+.
T Consensus 292 l~-------~~g~~si~d~i 304 (310)
T COG0167 292 LE-------EKGFESIQDII 304 (310)
T ss_pred HH-------HcCCCCHHHHh
Confidence 32 24566666654
No 458
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=83.19 E-value=30 Score=30.07 Aligned_cols=40 Identities=25% Similarity=0.502 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcC
Q 017781 211 SLSWKDVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~ 250 (366)
...++.++++++..++||++-|..+.++ .++|+|++.+..
T Consensus 136 ~~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 136 PLGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEeh
Confidence 3468888999887889999988777765 889999998753
No 459
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=83.15 E-value=26 Score=34.20 Aligned_cols=72 Identities=24% Similarity=0.277 Sum_probs=53.2
Q ss_pred HHcCCcEEEEcC---CCccCC-C---CCcchHHHHHHHHHHcCCCceEEEecCCCC----------------------HH
Q 017781 239 VQAGAAGIIVSN---HGARQL-D---YVPATIMALEEVVKATQGRIPVFLDGGVRR----------------------GT 289 (366)
Q Consensus 239 ~~aGad~I~vs~---~gg~~~-~---~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~----------------------~~ 289 (366)
.+.|+|.+-++. ||-+.. + ...-.++.|.+|.+.+. ++|+..=||=.. -+
T Consensus 174 ~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e 252 (321)
T PRK07084 174 KKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEE 252 (321)
T ss_pred HHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHH
Confidence 567999999875 553321 0 11236789999999883 599998887533 38
Q ss_pred HHHHHHHhCcCEEEecHHHHHH
Q 017781 290 DVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 290 dv~kalalGAd~V~igr~~l~~ 311 (366)
|+.||+.+|..-|-+++-+..+
T Consensus 253 ~~~kai~~GI~KINi~Tdl~~a 274 (321)
T PRK07084 253 QLRKAAKSAVCKINIDSDGRLA 274 (321)
T ss_pred HHHHHHHcCCceeccchHHHHH
Confidence 8999999999999999976544
No 460
>PLN02535 glycolate oxidase
Probab=83.03 E-value=2 Score=42.68 Aligned_cols=42 Identities=26% Similarity=0.496 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
.+|+.+..+++.. ++|||+ .||-+++|+.++..+|+|+|.+.
T Consensus 210 ~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 210 LSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred CCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 4788888888866 799888 66999999999999999999885
No 461
>PRK15452 putative protease; Provisional
Probab=83.01 E-value=22 Score=36.29 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=40.6
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEec--CCCCHHHHHHHHHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G--GI~~~~dv~kalalGAd~V~igr~~ 308 (366)
.++|+|+|+|++-| .+.-+++.. .+++|.+|- .|.+...+.-...+|++.|.+.+-+
T Consensus 86 ~~~gvDgvIV~d~G------------~l~~~ke~~-p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrEL 144 (443)
T PRK15452 86 IAMKPDALIMSDPG------------LIMMVREHF-PEMPIHLSVQANAVNWATVKFWQQMGLTRVILSREL 144 (443)
T ss_pred HhCCCCEEEEcCHH------------HHHHHHHhC-CCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcC
Confidence 68999999997733 233333332 267888887 5677777766667999999999865
No 462
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=82.95 E-value=2.4 Score=42.11 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEec
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ig 305 (366)
+|+.+.++++.. +.|||+- ||.+++|+.+++.+|+|+|.++
T Consensus 224 ~w~~i~~ir~~~--~~pviiK-gV~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 224 NWQDLRWLRDLW--PHKLLVK-GIVTAEDAKRCIELGADGVILS 264 (361)
T ss_pred CHHHHHHHHHhC--CCCEEEe-cCCCHHHHHHHHHCCcCEEEEC
Confidence 678899999887 6788887 4999999999999999999886
No 463
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=82.69 E-value=34 Score=30.47 Aligned_cols=39 Identities=26% Similarity=0.499 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHhcC-CCEEEEeccCHHH----HHcCCcEEEEcC
Q 017781 212 LSWKDVKWLQTITK-LPILVKGVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 212 ~~~~~i~~lr~~~~-~pv~vK~v~~~~d----~~aGad~I~vs~ 250 (366)
..++.++++++..+ +||++=|..+.++ .++|+|++++..
T Consensus 146 ~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs 189 (212)
T PRK00043 146 QGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVVS 189 (212)
T ss_pred CCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEeH
Confidence 35888999998887 9999998878776 899999998743
No 464
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=82.62 E-value=7.4 Score=37.04 Aligned_cols=86 Identities=13% Similarity=0.125 Sum_probs=50.3
Q ss_pred HHcCCcEEEEcCCCccCCCCCcc-hHHHHHHHHHHcCCCceEEEecCCCCHHHHHH----HHHhCcCEEEecHHHHHHhh
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~k----alalGAd~V~igr~~l~~l~ 313 (366)
.+.|+|+|.+.++.|....-... ..+.+..+++.. +++ +...|+ .+-.|+++ |-.+|||+|++-.|+++..
T Consensus 30 ~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~~v-i~gvg~-~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~- 105 (279)
T cd00953 30 ISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-DKV-IFQVGS-LNLEESIELARAAKSFGIYAIASLPPYYFPG- 105 (279)
T ss_pred HHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-CCE-EEEeCc-CCHHHHHHHHHHHHHcCCCEEEEeCCcCCCC-
Confidence 56799999998876643222222 234455555555 232 444443 34444443 2338999999999987531
Q ss_pred hcCHHHHHHHHHHHHH
Q 017781 314 AEGEKGVRRVLEMLRE 329 (366)
Q Consensus 314 ~~G~~gv~~~~~~l~~ 329 (366)
..++++.+++..+.+
T Consensus 106 -~~~~~i~~yf~~v~~ 120 (279)
T cd00953 106 -IPEEWLIKYFTDISS 120 (279)
T ss_pred -CCHHHHHHHHHHHHh
Confidence 135677666666655
No 465
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=82.52 E-value=13 Score=31.40 Aligned_cols=80 Identities=21% Similarity=0.200 Sum_probs=49.3
Q ss_pred HHHHHHHhcCCCEEEEec-cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc----CCCceEEEecCC
Q 017781 216 DVKWLQTITKLPILVKGV-LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLDGGV 285 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v-~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~----~~~i~vi~~GGI 285 (366)
.+..+-+..+.-|+--++ .++++ .+.++|.|.+|..-+ .+.+..+++.+.+ .++++|++ ||.
T Consensus 21 iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~-------~~~~~~~~~~~~L~~~g~~~i~viv-GG~ 92 (132)
T TIGR00640 21 VIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAG-------GHLTLVPALRKELDKLGRPDILVVV-GGV 92 (132)
T ss_pred HHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchh-------hhHHHHHHHHHHHHhcCCCCCEEEE-eCC
Confidence 344444445665555555 35555 788999999987532 2333333333333 12566666 776
Q ss_pred CCHHHHHHHHHhCcCEEE
Q 017781 286 RRGTDVFKALALGASGIF 303 (366)
Q Consensus 286 ~~~~dv~kalalGAd~V~ 303 (366)
.-.+|.....++|.|.+.
T Consensus 93 ~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 93 IPPQDFDELKEMGVAEIF 110 (132)
T ss_pred CChHhHHHHHHCCCCEEE
Confidence 677888888899987764
No 466
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=82.20 E-value=2.3 Score=38.51 Aligned_cols=49 Identities=27% Similarity=0.429 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 261 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 261 ~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
+..+++..+.... .-||+.-|||+-.+|..-+..+|.++|.+||++..+
T Consensus 168 ~~~E~l~~~~~~s--~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G 216 (229)
T COG1411 168 PDYELLTKVLELS--EHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEG 216 (229)
T ss_pred CCHHHHHHHHHhc--cCceeecCCcCcHHHHHHHhcCCCceeeehhhhhcC
Confidence 4567776666554 679999999999999999999999999999987543
No 467
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=82.16 E-value=14 Score=34.91 Aligned_cols=71 Identities=24% Similarity=0.274 Sum_probs=39.7
Q ss_pred ccCHHH-HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcC-CCceEEEe-----cCC----CCHHHHH-----HHHH
Q 017781 233 VLTAED-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVFLD-----GGV----RRGTDVF-----KALA 296 (366)
Q Consensus 233 v~~~~d-~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~-~~i~vi~~-----GGI----~~~~dv~-----kala 296 (366)
+.++|+ ..+|+|++.+.-..|...+ .-.++.+.++++... -.+|+++- =.+ ..-.|.+ -+.+
T Consensus 100 ~~~ve~ai~lgadAV~~~Vy~Gse~e--~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaae 177 (265)
T COG1830 100 VATVEDAIRLGADAVGATVYVGSETE--REMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAE 177 (265)
T ss_pred eeeHHHHHhCCCcEEEEEEecCCcch--HHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHH
Confidence 346677 9999999987755543211 123334444443321 26787771 122 2233333 3566
Q ss_pred hCcCEEEec
Q 017781 297 LGASGIFIG 305 (366)
Q Consensus 297 lGAd~V~ig 305 (366)
+|||.|=..
T Consensus 178 lGADIiK~~ 186 (265)
T COG1830 178 LGADIIKTK 186 (265)
T ss_pred hcCCeEeec
Confidence 899999765
No 468
>COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=82.07 E-value=0.66 Score=40.95 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=44.7
Q ss_pred cccceeeeccccC-CCCCCccceeEcC-cccCCceEecccccccccCChhhHHHHHHHHHcCCceec
Q 017781 42 AFSRILFRPRILI-DVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL 106 (366)
Q Consensus 42 ~f~~i~l~pr~l~-~~~~vd~st~l~g-~~l~~Pi~iApm~~~~l~~~~~e~~la~aa~~~G~~~~v 106 (366)
.|+++.++|..-. ...++|++|.+.. ..+..|++.|+|...+ |..+|.+.++.|...++
T Consensus 16 tfddVll~p~~s~v~p~~~~vkt~i~~~i~l~iP~vSA~MDtVt------ea~mAi~ma~~GGIGVi 76 (170)
T COG0516 16 TFDDVLLLPAASDVAPAGVDVKTGLGPGIGVNIPQVSAAMDTVT------EARMAIAMARDGGIGVM 76 (170)
T ss_pred eeccCcchhhHHhhccCCCeeEecccCCcccCchHHHHHHHHHH------HHHHhHHHHHcCCeEEE
Confidence 5999999996542 3345999999985 8999999999995433 66777777777766555
No 469
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.71 E-value=14 Score=32.95 Aligned_cols=82 Identities=15% Similarity=0.082 Sum_probs=52.9
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 213 SWKDVKWLQTITKLPILVKGVLTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
.|+.++.+.+.-=+|| +.. .+.++ .+.|++.|.+... .+...+.+..+++.. ..-.+..|-
T Consensus 2 ~~~~~~~l~~~~~~~v-~r~-~~~~~~~~~~~~~~~~Gv~~vqlr~k-------~~~~~e~~~~~~~~~--~~~~~g~gt 70 (187)
T PRK07455 2 QQDWLAQLQQHRAIAV-IRA-PDLELGLQMAEAVAAGGMRLIEITWN-------SDQPAELISQLREKL--PECIIGTGT 70 (187)
T ss_pred chHHHHHHHhCCEEEE-EEc-CCHHHHHHHHHHHHHCCCCEEEEeCC-------CCCHHHHHHHHHHhC--CCcEEeEEE
Confidence 3566666655311232 222 24443 8889999987542 234556666666543 344566788
Q ss_pred CCCHHHHHHHHHhCcCEEEec
Q 017781 285 VRRGTDVFKALALGASGIFIG 305 (366)
Q Consensus 285 I~~~~dv~kalalGAd~V~ig 305 (366)
+.+.+++-.|+++|||+|.++
T Consensus 71 vl~~d~~~~A~~~gAdgv~~p 91 (187)
T PRK07455 71 ILTLEDLEEAIAAGAQFCFTP 91 (187)
T ss_pred EEcHHHHHHHHHcCCCEEECC
Confidence 999999999999999999444
No 470
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=81.44 E-value=3.4 Score=40.37 Aligned_cols=71 Identities=27% Similarity=0.336 Sum_probs=53.1
Q ss_pred HHcCCcEEEEcCCCc-cCC-CCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHH-----------HHHHHhCcCEEEec
Q 017781 239 VQAGAAGIIVSNHGA-RQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV-----------FKALALGASGIFIG 305 (366)
Q Consensus 239 ~~aGad~I~vs~~gg-~~~-~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv-----------~kalalGAd~V~ig 305 (366)
.+-|||-|+.-|-.+ |.- -...|.+++|.+.++.+ =+|+-+-||||+-.|+ ..++..|||-|.||
T Consensus 279 yq~GADEv~FLNITsFRdcPl~D~PMlqVL~qaaktV--FVPLTVGGGIrD~~D~dGt~~palEVA~~YFRSGADKvSIG 356 (541)
T KOG0623|consen 279 YQDGADEVSFLNITSFRDCPLGDLPMLQVLRQAAKTV--FVPLTVGGGIRDFTDADGTYYPALEVAAEYFRSGADKVSIG 356 (541)
T ss_pred HhcCCceeEEEeeccccCCCcccChHHHHHHHhhceE--EEEEeecCcccccccCCCcCchhHHHHHHHHhcCCceeeec
Confidence 778999998777433 321 23356788888877766 5899999999987663 45677899999999
Q ss_pred HHHHHH
Q 017781 306 RPVVYS 311 (366)
Q Consensus 306 r~~l~~ 311 (366)
+-..++
T Consensus 357 sDAVyA 362 (541)
T KOG0623|consen 357 SDAVYA 362 (541)
T ss_pred hhHHHH
Confidence 976665
No 471
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=81.23 E-value=17 Score=33.23 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=55.9
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEecc-CHHH------HHcCCcEEEEcCC----CccCCCCCcchHHHHHHHHHHcCCCc
Q 017781 209 DRSLSWKDVKWLQTITKLPILVKGVL-TAED------VQAGAAGIIVSNH----GARQLDYVPATIMALEEVVKATQGRI 277 (366)
Q Consensus 209 d~~~~~~~i~~lr~~~~~pv~vK~v~-~~~d------~~aGad~I~vs~~----gg~~~~~~~~~~~~l~~i~~~~~~~i 277 (366)
+.+.+.+.++.+|+..+++++-.... ...+ ....+|++.+... ||+. -.-.|+.+. +.. ..
T Consensus 84 Hg~e~~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG---~~~dw~~l~---~~~--~~ 155 (210)
T PRK01222 84 HGDETPEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTG---KTFDWSLLP---AGL--AK 155 (210)
T ss_pred CCCCCHHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCC---CccchHHhh---hcc--CC
Confidence 33446677889998777775433322 2222 2236899988763 3221 112455551 122 46
Q ss_pred eEEEecCCCCHHHHHHHHH-hCcCEEEecHH
Q 017781 278 PVFLDGGVRRGTDVFKALA-LGASGIFIGRP 307 (366)
Q Consensus 278 ~vi~~GGI~~~~dv~kala-lGAd~V~igr~ 307 (366)
|++..||| +++.+.+++. ++..+|=+.+-
T Consensus 156 p~~LAGGi-~peNv~~ai~~~~p~gvDvsSg 185 (210)
T PRK01222 156 PWILAGGL-NPDNVAEAIRQVRPYGVDVSSG 185 (210)
T ss_pred CEEEECCC-CHHHHHHHHHhcCCCEEEecCc
Confidence 99999999 6889999998 47777777643
No 472
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=81.18 E-value=19 Score=35.41 Aligned_cols=114 Identities=21% Similarity=0.318 Sum_probs=68.3
Q ss_pred hHHHHHHHHHcCCceecCCCCCCCHHHHhccCC-CceEEEeeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHH
Q 017781 90 EYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (366)
Q Consensus 90 e~~la~aa~~~G~~~~vs~~~~~~~e~i~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d 168 (366)
+..+--.+..+|++.+..++...+-+.+..... +...+.... +.+..++++++|+++++.. .+..|
T Consensus 93 ~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~------~~~~A~~~~~~G~d~vI~~--g~eAG----- 159 (336)
T COG2070 93 EAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVI------TVREALKAERAGADAVIAQ--GAEAG----- 159 (336)
T ss_pred HHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeC------CHHHHHHHHhCCCCEEEec--CCcCC-----
Confidence 455666677779999987776333344332211 223333221 2345678889999998751 11000
Q ss_pred HhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC-CHHHHHHHHHhcC-CCEEEEec-cCHHH----HHc
Q 017781 169 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKDVKWLQTITK-LPILVKGV-LTAED----VQA 241 (366)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~i~~lr~~~~-~pv~vK~v-~~~~d----~~a 241 (366)
.|... .+..+ +...+.++++.++ +||+.-|. .+.++ ...
T Consensus 160 ---------------------------------GH~g~-~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlal 205 (336)
T COG2070 160 ---------------------------------GHRGG-VDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALAL 205 (336)
T ss_pred ---------------------------------CcCCC-CCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHh
Confidence 01000 12233 3456899999998 89999965 56665 889
Q ss_pred CCcEEEEcC
Q 017781 242 GAAGIIVSN 250 (366)
Q Consensus 242 Gad~I~vs~ 250 (366)
|||+|.+..
T Consensus 206 GA~gVq~GT 214 (336)
T COG2070 206 GADGVQMGT 214 (336)
T ss_pred ccHHHHhhh
Confidence 999998754
No 473
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=81.15 E-value=4.8 Score=36.22 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCCEEEEecc----CHHH-HHcCCcEEEEcCCCccCCCCCcc---hHHHHHHHHHHcCCCceEEEecCCC
Q 017781 215 KDVKWLQTITKLPILVKGVL----TAED-VQAGAAGIIVSNHGARQLDYVPA---TIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~----~~~d-~~aGad~I~vs~~gg~~~~~~~~---~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
+.++.+|+ .+..+.+.... +.+. ....+|+|.++..--+.+. ... .++.+..+.+.. .+.||++| |.
T Consensus 138 ~~l~~l~~-~G~~i~ld~~g~~~~~~~~l~~l~~~~ikld~~~~~~~~-~~~~~~~l~~l~~~~~~~--~~~via~g-Ve 212 (236)
T PF00563_consen 138 ENLRRLRS-LGFRIALDDFGSGSSSLEYLASLPPDYIKLDGSLVRDLS-DEEAQSLLQSLINLAKSL--GIKVIAEG-VE 212 (236)
T ss_dssp HHHHHHHH-CT-EEEEEEETSTCGCHHHHHHHCGSEEEEEHHGHTTTT-SHHHHHHHHHHHHHHHHT--T-EEEEEC-E-
T ss_pred HHHHHHHh-cCceeEeeeccCCcchhhhhhhcccccceeecccccccc-hhhHHHHHHHHHHHhhcc--ccccceee-cC
Confidence 45777777 68899998763 2333 8889999999874322233 322 334444455544 78899976 99
Q ss_pred CHHHHHHHHHhCcCEEE
Q 017781 287 RGTDVFKALALGASGIF 303 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~ 303 (366)
+.++.-.+..+|++.++
T Consensus 213 ~~~~~~~l~~~G~~~~Q 229 (236)
T PF00563_consen 213 SEEQLELLKELGVDYIQ 229 (236)
T ss_dssp SHHHHHHHHHTTESEEE
T ss_pred CHHHHHHHHHcCCCEEE
Confidence 99999999999999886
No 474
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=81.03 E-value=48 Score=30.98 Aligned_cols=96 Identities=19% Similarity=0.181 Sum_probs=68.0
Q ss_pred HHHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---CCC-ceEEEecCCCC
Q 017781 216 DVKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGR-IPVFLDGGVRR 287 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~-i~vi~~GGI~~ 287 (366)
.++.+++. ++++-+-.+.+... .++|++.|. -.-||-.|++......+.++++.. ... ..+++- +++.
T Consensus 107 Ai~~L~~e-GI~~NvTLiFS~~QAl~aa~aga~~iS--pFvgRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~va-s~~~ 182 (239)
T COG0176 107 AIKALEAE-GIKTNVTLIFSAAQALLAAEAGATYIS--PFVGRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLVA-SARF 182 (239)
T ss_pred HHHHHHHC-CCeeeEEEEecHHHHHHHHHhCCeEEE--eecchHHhhccCchHHHHHHHHHHHHhccccceEEEe-cCcc
Confidence 45555554 68888888888876 888887664 444666666665555555555433 223 456665 4999
Q ss_pred HHHHHHHHHhCcCEEEecHHHHHHhhhc
Q 017781 288 GTDVFKALALGASGIFIGRPVVYSLAAE 315 (366)
Q Consensus 288 ~~dv~kalalGAd~V~igr~~l~~l~~~ 315 (366)
+.++..+..+|||.+-+.-..+..+...
T Consensus 183 ~~~~~~~~l~G~d~~Tip~~~l~~l~~~ 210 (239)
T COG0176 183 PNHVYIAALAGADVLTIPPDLLKQLLKH 210 (239)
T ss_pred HHHHHHHHHhCCCcccCCHHHHHHHHhc
Confidence 9999999999999999998888776544
No 475
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=80.96 E-value=42 Score=30.19 Aligned_cols=121 Identities=18% Similarity=0.111 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.|.....+.++++.+.|++.+-+.+- | +--.| ...+
T Consensus 13 ~~~~~~~~~~~~~~~~G~~~i~l~~~---------d---~~~~~--------------------------------~~~~ 48 (220)
T PRK05581 13 ADFARLGEEVKAVEAAGADWIHVDVM---------D---GHFVP--------------------------------NLTI 48 (220)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCc---------c---CCcCC--------------------------------CcCc
Confidence 46666778899999999999866311 0 00000 1123
Q ss_pred CHHHHHHHHHhcCCCEEEEec-cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 213 SWKDVKWLQTITKLPILVKGV-LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
..+.++++++.++.|+-+-.. .+.++ .++|+|+|.++. +. . ......+..+++ . .+.+..+-+-.
T Consensus 49 ~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~vh~--~~-~---~~~~~~~~~~~~-~--~~~~g~~~~~~ 119 (220)
T PRK05581 49 GPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITFHV--EA-S---EHIHRLLQLIKS-A--GIKAGLVLNPA 119 (220)
T ss_pred CHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEee--cc-c---hhHHHHHHHHHH-c--CCEEEEEECCC
Confidence 567788888766544323221 23222 899999998854 21 0 112233333332 2 44444444566
Q ss_pred CHHHHHHHHHhCcCEEEecH
Q 017781 287 RGTDVFKALALGASGIFIGR 306 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~igr 306 (366)
+..+..+.+..++|.+.++.
T Consensus 120 t~~e~~~~~~~~~d~i~~~~ 139 (220)
T PRK05581 120 TPLEPLEDVLDLLDLVLLMS 139 (220)
T ss_pred CCHHHHHHHHhhCCEEEEEE
Confidence 77888888888899988875
No 476
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=80.79 E-value=13 Score=35.70 Aligned_cols=90 Identities=17% Similarity=0.198 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCCEEEEec--cCHHH--------HHcCCcEEEEc--------CCCccCCC-CCcchHHHHHHHH---HH-
Q 017781 216 DVKWLQTITKLPILVKGV--LTAED--------VQAGAAGIIVS--------NHGARQLD-YVPATIMALEEVV---KA- 272 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v--~~~~d--------~~aGad~I~vs--------~~gg~~~~-~~~~~~~~l~~i~---~~- 272 (366)
.++.|...+++||++-.= .++.+ .++|+.+|.+= +|.|.... .-.+.-+.+..|+ ++
T Consensus 69 ~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~ 148 (285)
T TIGR02320 69 VVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQ 148 (285)
T ss_pred HHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhc
Confidence 356666677899988721 34433 89999999981 12111100 1123333343443 33
Q ss_pred cCCCceEEEecCC----CCHHHHH---H-HHHhCcCEEEec
Q 017781 273 TQGRIPVFLDGGV----RRGTDVF---K-ALALGASGIFIG 305 (366)
Q Consensus 273 ~~~~i~vi~~GGI----~~~~dv~---k-alalGAd~V~ig 305 (366)
...+++|++--.- ..-++++ + +.++|||+|++-
T Consensus 149 ~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 149 TTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred cCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 2346788775111 1233333 3 345899999985
No 477
>PRK05269 transaldolase B; Provisional
Probab=80.74 E-value=59 Score=31.76 Aligned_cols=97 Identities=13% Similarity=0.205 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHhc--CCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCC-------------CcchHHHHHHHHHH
Q 017781 212 LSWKDVKWLQTIT--KLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKA 272 (366)
Q Consensus 212 ~~~~~i~~lr~~~--~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~-------------~~~~~~~l~~i~~~ 272 (366)
.+|+-++.++... ++++-+=.+.+.+. .++|++.|... -||-.|+ +.+.+..+.++.+.
T Consensus 135 aT~eGi~A~~~L~~~GI~vn~TlvFs~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~ 212 (318)
T PRK05269 135 STWEGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPF--VGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNY 212 (318)
T ss_pred CCHHHHHHHHHHHHcCCceeEeEecCHHHHHHHHHcCCCEEEee--ccHHHHHhhhcccccccCcCCCcHHHHHHHHHHH
Confidence 3565544444332 88998888999877 99999877642 2332111 33455556666554
Q ss_pred c---CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 273 T---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 273 ~---~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
. +.+..|++. .+|+..++.+ ..|+|.|-|.-.++..+.
T Consensus 213 ~k~~~~~t~im~A-Sfrn~~~v~~--laG~d~vTi~p~ll~~l~ 253 (318)
T PRK05269 213 YKKHGYKTVVMGA-SFRNTGQILE--LAGCDRLTISPALLEELA 253 (318)
T ss_pred HHHcCCCceEEee-ccCCHHHHHH--HhCCCeEECCHHHHHHHH
Confidence 4 234556664 6999999997 569999999988887765
No 478
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=80.73 E-value=19 Score=33.28 Aligned_cols=74 Identities=22% Similarity=0.233 Sum_probs=41.1
Q ss_pred eccCHHH----HHcCCcEEEEcC---CCccC-CCCCcchH---HHHHHHHHH---cC-CCceEEEecCCCCHHHHHHHHH
Q 017781 232 GVLTAED----VQAGAAGIIVSN---HGARQ-LDYVPATI---MALEEVVKA---TQ-GRIPVFLDGGVRRGTDVFKALA 296 (366)
Q Consensus 232 ~v~~~~d----~~aGad~I~vs~---~gg~~-~~~~~~~~---~~l~~i~~~---~~-~~i~vi~~GGI~~~~dv~kala 296 (366)
-+.++++ .++|+|.|+.+- .||.- ...+.+.. +.+..+.++ ++ +-+++.--|=|.+++|..--+.
T Consensus 162 yV~s~~eAqa~~~aGadiiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~kd~i~l~~GGPi~~p~da~yi~d 241 (276)
T COG5564 162 YVFSFEEAQAMTKAGADIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVRKDVIPLCHGGPISMPEDARYILD 241 (276)
T ss_pred eecCHHHHHHHHHcCcceeeecccccccceeccccccCHHHHHHHHHHHHHHHhhhhhceeeeccCCCcCCchhhHHHHh
Confidence 3467776 899999998753 23321 11122221 222222222 22 2367777777999999875443
Q ss_pred --hCcCEEEec
Q 017781 297 --LGASGIFIG 305 (366)
Q Consensus 297 --lGAd~V~ig 305 (366)
-|+|+..=+
T Consensus 242 ~c~~~~gfyga 252 (276)
T COG5564 242 RCPGCDGFYGA 252 (276)
T ss_pred hCCCCCccccc
Confidence 477775433
No 479
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=80.67 E-value=15 Score=33.50 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=30.2
Q ss_pred CHHHHHHHHHhcCCCEEEEec-cCHHH----HHcCCcEEEE
Q 017781 213 SWKDVKWLQTITKLPILVKGV-LTAED----VQAGAAGIIV 248 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~vK~v-~~~~d----~~aGad~I~v 248 (366)
+.+.++.+|+.++.|+++.+. .+.++ .++|||+|++
T Consensus 164 ~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 164 NPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred CHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 467899999999999999965 57766 5789999987
No 480
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=80.30 E-value=47 Score=30.35 Aligned_cols=46 Identities=28% Similarity=0.375 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHH
Q 017781 264 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 311 (366)
Q Consensus 264 ~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 311 (366)
+.+.+++++. ++.|+.+-=||.+++++-..-.- ||+|.+|+.++.-
T Consensus 196 ~L~qrvrk~t-~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv~l 241 (268)
T KOG4175|consen 196 SLLQRVRKAT-GDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIVKL 241 (268)
T ss_pred HHHHHHHHhc-CCCceeEeeccCCHHHHHhhhhh-ccceEecHHHHHH
Confidence 4556666665 47888887799999998765545 9999999988653
No 481
>PRK12346 transaldolase A; Provisional
Probab=80.13 E-value=17 Score=35.50 Aligned_cols=97 Identities=12% Similarity=0.190 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHh--cCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCC-------------CcchHHHHHHHHHH
Q 017781 212 LSWKDVKWLQTI--TKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKA 272 (366)
Q Consensus 212 ~~~~~i~~lr~~--~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~-------------~~~~~~~l~~i~~~ 272 (366)
.+|+-++.++.. -++++-+-.+.+... .++|++.|.. .-||-.+| +.+....+.++.+.
T Consensus 134 aT~eGi~A~~~L~~~GI~~n~TliFS~~Qa~~aa~AGa~~ISP--fVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~ 211 (316)
T PRK12346 134 STWEGIRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISP--FVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDY 211 (316)
T ss_pred CCHHHHHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEe--cccHHHHhhhhccccccccccCCChHHHHHHHHHH
Confidence 467655544433 288988888999877 9999988753 32332221 33445555566554
Q ss_pred c---CCCceEEEecCCCCHHHHHHHHHhCcCEEEecHHHHHHhh
Q 017781 273 T---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 313 (366)
Q Consensus 273 ~---~~~i~vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~l~ 313 (366)
. +.+..|++ ..+|+..++. ..+|+|.+-|.-.++..+.
T Consensus 212 ~k~~~~~T~Vm~-ASfRn~~qi~--alaG~d~lTi~p~ll~~L~ 252 (316)
T PRK12346 212 YKQHRYETIVMG-ASFRRTEQIL--ALAGCDRLTISPNLLKELQ 252 (316)
T ss_pred HHHcCCCcEEEe-cccCCHHHHH--HHhCCCEEeCCHHHHHHHH
Confidence 4 22444444 5599999998 3469999999988877664
No 482
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=80.09 E-value=20 Score=34.76 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=14.0
Q ss_pred HHHHHHHHHhc-CCCEEEEec
Q 017781 214 WKDVKWLQTIT-KLPILVKGV 233 (366)
Q Consensus 214 ~~~i~~lr~~~-~~pv~vK~v 233 (366)
++.|+.+|+.+ ++|+.+=.|
T Consensus 251 LDIi~~~k~~~~~~PvaaYqV 271 (320)
T cd04824 251 LDIVREAKDKHPDLPLAVYHV 271 (320)
T ss_pred HHHHHHHHHhccCCCEEEEEc
Confidence 45677777777 777776655
No 483
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=79.83 E-value=18 Score=33.62 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHhcCCCEEEEe-ccCHHH----HHcCCcEEEEc
Q 017781 212 LSWKDVKWLQTITKLPILVKG-VLTAED----VQAGAAGIIVS 249 (366)
Q Consensus 212 ~~~~~i~~lr~~~~~pv~vK~-v~~~~d----~~aGad~I~vs 249 (366)
.+|+.|++++ .++||+.=| +.+.++ .+.|+|+|.+.
T Consensus 180 ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 180 ADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred CcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 4678888887 578987754 578887 77999999874
No 484
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=79.81 E-value=14 Score=36.96 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHhcC-CCEEEEecc---------CHHH--------HHcCCcEEEEcCCCccC-------CCCCcch---
Q 017781 211 SLSWKDVKWLQTITK-LPILVKGVL---------TAED--------VQAGAAGIIVSNHGARQ-------LDYVPAT--- 262 (366)
Q Consensus 211 ~~~~~~i~~lr~~~~-~pv~vK~v~---------~~~d--------~~aGad~I~vs~~gg~~-------~~~~~~~--- 262 (366)
.+..+.++.|++..+ --+.+.++. +.|+ .+-|.|.+-++|.-.-. -.+.+..
T Consensus 225 Rf~lEv~daVr~~Ip~s~~~l~~~~~~~fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~ 304 (400)
T KOG0134|consen 225 RFPLEVVDAVRKEIPASRVFLRGSPTNEFQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAF 304 (400)
T ss_pred hhhHHHHHHHHHhhccccceEEecCchhhhhccccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccc
Confidence 467888999999873 122333221 2222 77788855554311100 0011111
Q ss_pred -HHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCc-CEEEecHHHHHH
Q 017781 263 -IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA-SGIFIGRPVVYS 311 (366)
Q Consensus 263 -~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGA-d~V~igr~~l~~ 311 (366)
.+....++...+ ..-|-+.||.++++.+.+++..|. |+|+.||+|+..
T Consensus 305 ~~~f~e~~r~~~k-gt~v~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~an 354 (400)
T KOG0134|consen 305 FVEFAETIRPVFK-GTVVYAGGGGRTREAMVEAVKSGRTDLIGYGRPFLAN 354 (400)
T ss_pred hhhhhhHHHHHhc-CcEEEecCCccCHHHHHHHHhcCCceeEEecchhccC
Confidence 122333444442 233566779999999999999995 599999999753
No 485
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=79.77 E-value=9.3 Score=34.44 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCCEEEEeccC-HHH----HHcCCcEEEEcCCCccCCCC---CcchHHHHHHHHHHcCCCceEEEecCCC
Q 017781 215 KDVKWLQTITKLPILVKGVLT-AED----VQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPVFLDGGVR 286 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v~~-~~d----~~aGad~I~vs~~gg~~~~~---~~~~~~~l~~i~~~~~~~i~vi~~GGI~ 286 (366)
+.++.+++. +..+.+-...+ ... ....+|+|.++.+--+.... ....++.+..+.+.. .+.||+.| |.
T Consensus 137 ~~i~~l~~~-G~~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~via~g-Ve 212 (241)
T smart00052 137 ATLQRLREL-GVRIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKL--GLQVVAEG-VE 212 (241)
T ss_pred HHHHHHHHC-CCEEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHC--CCeEEEec-CC
Confidence 557777774 78888876532 222 77789999997642222211 122344555555555 68899975 99
Q ss_pred CHHHHHHHHHhCcCEEE
Q 017781 287 RGTDVFKALALGASGIF 303 (366)
Q Consensus 287 ~~~dv~kalalGAd~V~ 303 (366)
+.++...+..+|.+.++
T Consensus 213 ~~~~~~~l~~~Gi~~~Q 229 (241)
T smart00052 213 TPEQLDLLRSLGCDYGQ 229 (241)
T ss_pred CHHHHHHHHHcCCCEEe
Confidence 99999999999999886
No 486
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=79.62 E-value=7.1 Score=37.67 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=52.1
Q ss_pred CCCEEEEeccCHHH----HHcCCcEEEEcCCCcc-----CCCCCcchH----HHHHHHHHHcCCCceEEEec--CCCCHH
Q 017781 225 KLPILVKGVLTAED----VQAGAAGIIVSNHGAR-----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGT 289 (366)
Q Consensus 225 ~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~-----~~~~~~~~~----~~l~~i~~~~~~~i~vi~~G--GI~~~~ 289 (366)
+.|+++=++-+.-. .++|.+++.+|+.+.. ..|.+.-++ ..+.+|.+.+ ++||++|. |..+..
T Consensus 15 ~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~dtGyG~~~ 92 (294)
T TIGR02319 15 PEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAV--DVPVIMDADAGYGNAM 92 (294)
T ss_pred CCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcH
Confidence 45777777655544 8999999998764321 234444443 3344555555 79999986 776766
Q ss_pred HH----HHHHHhCcCEEEec
Q 017781 290 DV----FKALALGASGIFIG 305 (366)
Q Consensus 290 dv----~kalalGAd~V~ig 305 (366)
++ .+....||.++.|-
T Consensus 93 ~v~r~V~~~~~aGaagi~IE 112 (294)
T TIGR02319 93 SVWRATREFERVGIVGYHLE 112 (294)
T ss_pred HHHHHHHHHHHcCCeEEEEE
Confidence 65 34555899999884
No 487
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=79.36 E-value=9.3 Score=36.71 Aligned_cols=107 Identities=23% Similarity=0.247 Sum_probs=58.9
Q ss_pred CCceEEEeeecCCHHHHHHHHHHHHHc--CCCEEEEecCCCCCcchhHHH-hhhcCCCCccccccccccccCCCccccch
Q 017781 122 PGIRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADI-KNRFTLPPFLTLKNFQGLDLGKMDEANDS 198 (366)
Q Consensus 122 ~~~~~~Qly~~~d~~~~~~~l~ra~~~--G~~ai~vtvd~p~~g~r~~d~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 198 (366)
..|.|+.|-+..|.+.+.++++.+.++ |++++.++ |+-..+... |. +....++.. ....++ +
T Consensus 157 ~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~-Nt~~~~~~i-d~~~~~~~~~~~---~~~gG~----------S 221 (294)
T cd04741 157 SIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITAT-NTLGNGLVL-DPERETVVLKPK---TGFGGL----------A 221 (294)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEE-ccCCccccc-cCCCCCcccCCC---CCCCCc----------C
Confidence 368999987766766777888888888 88888753 221110000 00 000000000 000000 0
Q ss_pred hhHHHhhhccCCCCCHHHHHHHHHhcC--CCEEEE-eccCHHH----HHcCCcEEEEcC
Q 017781 199 GLAAYVAGQIDRSLSWKDVKWLQTITK--LPILVK-GVLTAED----VQAGAAGIIVSN 250 (366)
Q Consensus 199 ~~~~~~~~~~d~~~~~~~i~~lr~~~~--~pv~vK-~v~~~~d----~~aGad~I~vs~ 250 (366)
+.. -....++.|+.+++..+ +||+.= ++.+.+| ..+|||+|-+..
T Consensus 222 --G~~-----i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~t 273 (294)
T cd04741 222 --GAY-----LHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGT 273 (294)
T ss_pred --chh-----hHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEch
Confidence 000 01124566788888884 887765 4688888 779999998753
No 488
>TIGR03586 PseI pseudaminic acid synthase.
Probab=79.12 E-value=42 Score=32.92 Aligned_cols=143 Identities=13% Similarity=0.154 Sum_probs=79.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCC
Q 017781 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (366)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (366)
+.|.+...++++.|.++|++++=...- ...++..... ++....++ ...+ .....+.+.. -.
T Consensus 13 ~G~~~~A~~lI~~A~~aGAdavKFQ~~------~~~~l~~~~~-~~~~~~~~-------~~~~--~~~~~~~~~~---~e 73 (327)
T TIGR03586 13 NGSLERALAMIEAAKAAGADAIKLQTY------TPDTITLDSD-RPEFIIKG-------GLWD--GRTLYDLYQE---AH 73 (327)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEeeec------cHHHhhcccc-cccccccc-------CCcC--CccHHHHHHH---hh
Confidence 467889999999999999998643221 1222211000 00000000 0000 0000111111 13
Q ss_pred CCHHH---HHHHHHhcCCCEEEEeccCHHH----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecC
Q 017781 212 LSWKD---VKWLQTITKLPILVKGVLTAED----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 284 (366)
Q Consensus 212 ~~~~~---i~~lr~~~~~pv~vK~v~~~~d----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 284 (366)
++++. +...++..+++++. .+.+.+. .+.|++++.+... ....+..|..+.+. ..|||.+-|
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KI~S~-------~~~n~~LL~~va~~---gkPvilstG 142 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFS-SPFDETAVDFLESLDVPAYKIASF-------EITDLPLIRYVAKT---GKPIIMSTG 142 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEE-ccCCHHHHHHHHHcCCCEEEECCc-------cccCHHHHHHHHhc---CCcEEEECC
Confidence 44444 55556667887554 3444443 7899999988442 22346677777653 689999999
Q ss_pred CCCHHHHHHHHH----hCcCEEEe
Q 017781 285 VRRGTDVFKALA----LGASGIFI 304 (366)
Q Consensus 285 I~~~~dv~kala----lGAd~V~i 304 (366)
..+-+++..|+. .|..-|.+
T Consensus 143 ~~t~~Ei~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 143 IATLEEIQEAVEACREAGCKDLVL 166 (327)
T ss_pred CCCHHHHHHHHHHHHHCCCCcEEE
Confidence 999999988875 46644444
No 489
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=79.09 E-value=19 Score=30.93 Aligned_cols=82 Identities=22% Similarity=0.215 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCCEEEEec-cCHHH-----HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHc---C-CCceEEEec
Q 017781 214 WKDVKWLQTITKLPILVKGV-LTAED-----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRIPVFLDG 283 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v-~~~~d-----~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~-~~i~vi~~G 283 (366)
-+.+.++-+..+.-|+.-+. .++++ .+..+|.|.+|..-|. ..+..+.+.+++ + +++. +..|
T Consensus 29 akvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~-------h~~l~~~lve~lre~G~~~i~-v~~G 100 (143)
T COG2185 29 AKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGG-------HLTLVPGLVEALREAGVEDIL-VVVG 100 (143)
T ss_pred hHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccch-------HHHHHHHHHHHHHHhCCcceE-Eeec
Confidence 45555555556777777765 57776 6889999999985431 223334444333 2 3454 4779
Q ss_pred CCCCHHHHHHHHHhCcCEEE
Q 017781 284 GVRRGTDVFKALALGASGIF 303 (366)
Q Consensus 284 GI~~~~dv~kalalGAd~V~ 303 (366)
|+-..+|..+.-++|.+.+.
T Consensus 101 Gvip~~d~~~l~~~G~~~if 120 (143)
T COG2185 101 GVIPPGDYQELKEMGVDRIF 120 (143)
T ss_pred CccCchhHHHHHHhCcceee
Confidence 99999998888889998885
No 490
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=79.07 E-value=56 Score=30.55 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=36.9
Q ss_pred HcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCC------HHH---HHHHHHhCcCEEEecHHHHH
Q 017781 240 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR------GTD---VFKALALGASGIFIGRPVVY 310 (366)
Q Consensus 240 ~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~------~~d---v~kalalGAd~V~igr~~l~ 310 (366)
++|.|+++++. +.+.++++..+.+. +|.+=||+- -.. ...|+..|||.+.+|||++.
T Consensus 154 ~~G~dgvv~~~-------------~e~~~ir~~~g~~~-~iltPGIg~~~~~gdQ~~~~t~~~A~~~Gad~ivVGR~I~~ 219 (240)
T COG0284 154 EAGLDGVVCSA-------------EEVAAIREILGPDF-LILTPGIGAGSQGGDQGRVMTPGEAVRAGADYIVVGRPITQ 219 (240)
T ss_pred cCCceEEEcCH-------------HHHHHHHHhcCCCc-EEECCCcCcCcCCCCcccccCHHHHHhcCCCEEEEChhhhc
Confidence 45778887643 34455555553233 444455666 333 34566789999999999987
Q ss_pred H
Q 017781 311 S 311 (366)
Q Consensus 311 ~ 311 (366)
+
T Consensus 220 a 220 (240)
T COG0284 220 A 220 (240)
T ss_pred C
Confidence 5
No 491
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=78.94 E-value=14 Score=35.30 Aligned_cols=87 Identities=25% Similarity=0.273 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCCEEEEec--cCHHH--------HHcCCcEEEEcCCCccCCCCC--cchHHHHHHHHHHcCCCceEEEe
Q 017781 215 KDVKWLQTITKLPILVKGV--LTAED--------VQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLD 282 (366)
Q Consensus 215 ~~i~~lr~~~~~pv~vK~v--~~~~d--------~~aGad~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~i~vi~~ 282 (366)
+.++.+-+ ++.||.+|-. .+++| ...|-+-|++.-+|- ..... ...+..++.+++ . .+|||+|
T Consensus 121 dLL~a~~~-tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG~-tFgy~~lv~D~r~ip~mk~-~--~lPVI~D 195 (290)
T PLN03033 121 DLLVAAAK-TGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGT-MFGYNDLIVDPRNLEWMRE-A--NCPVVAD 195 (290)
T ss_pred HHHHHHHc-cCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCC-CcCCCCcccchhhhHHHHh-c--CCCEEEe
Confidence 34444443 5899999954 56666 778888888876663 22111 234556665553 3 6899986
Q ss_pred --------------------cCCCCHH--HHHHHHHhCcCEEEecH
Q 017781 283 --------------------GGVRRGT--DVFKALALGASGIFIGR 306 (366)
Q Consensus 283 --------------------GGI~~~~--dv~kalalGAd~V~igr 306 (366)
||-|.-- -...|+++|||++++-.
T Consensus 196 pSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfiEv 241 (290)
T PLN03033 196 ITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEV 241 (290)
T ss_pred CCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 3433322 23467889999999985
No 492
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=78.68 E-value=22 Score=31.85 Aligned_cols=85 Identities=22% Similarity=0.118 Sum_probs=51.5
Q ss_pred CHHHHHHHHHhc-CCCEEEEe-ccCHH-----H-HHcCCcEEEEcCCCccCCCCCcch-HHHHHHHHHHcCCCceEEEe-
Q 017781 213 SWKDVKWLQTIT-KLPILVKG-VLTAE-----D-VQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLD- 282 (366)
Q Consensus 213 ~~~~i~~lr~~~-~~pv~vK~-v~~~~-----d-~~aGad~I~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~i~vi~~- 282 (366)
..+.++.+|+.. +.++++-. +.++. . .++|+|+|.++... +... .+.+..+++ . .++++++
T Consensus 39 g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~------~~~~~~~~i~~~~~-~--g~~~~~~~ 109 (206)
T TIGR03128 39 GIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVA------DDATIKGAVKAAKK-H--GKEVQVDL 109 (206)
T ss_pred CHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccC------CHHHHHHHHHHHHH-c--CCEEEEEe
Confidence 456788888875 44444321 22322 2 89999999876421 1112 233444333 3 5777765
Q ss_pred cCCCCH-HHHHHHHHhCcCEEEecH
Q 017781 283 GGVRRG-TDVFKALALGASGIFIGR 306 (366)
Q Consensus 283 GGI~~~-~dv~kalalGAd~V~igr 306 (366)
-+..+. +++..+..+|+|.|.+..
T Consensus 110 ~~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 110 INVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred cCCCChHHHHHHHHHcCCCEEEEcC
Confidence 355554 677778888999998853
No 493
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=78.56 E-value=65 Score=30.97 Aligned_cols=214 Identities=16% Similarity=0.092 Sum_probs=0.0
Q ss_pred hHHHHHHHHHcCCceecCCCCCC-------------------CHHHHhccCCCceEEEe-eecCCHHHHHHHHHHHHHcC
Q 017781 90 EYATARAASAAGTIMTLSSWSTS-------------------SVEEVASTGPGIRFFQL-YVYKDRNVVAQLVRRAERAG 149 (366)
Q Consensus 90 e~~la~aa~~~G~~~~vs~~~~~-------------------~~e~i~~~~~~~~~~Ql-y~~~d~~~~~~~l~ra~~~G 149 (366)
+...|+.+++.|.-..-.+.... ..+.|.+...-|...=+ ....+.....+.++.++++|
T Consensus 27 d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG 106 (289)
T COG2513 27 DAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAG 106 (289)
T ss_pred CHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcC
Q ss_pred CCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCCCHHHHHHHHHhc-CCCE
Q 017781 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPI 228 (366)
Q Consensus 150 ~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~-~~pv 228 (366)
+.++.| +.-..|+++.-..-..+ .+.+.-.+.|+.+++.. +.++
T Consensus 107 ~agi~i---------------EDq~~pk~cgh~~gk~l--------------------~~~~e~v~rIkAa~~a~~~~~f 151 (289)
T COG2513 107 AAGIHI---------------EDQVGPKRCGHLPGKEL--------------------VSIDEMVDRIKAAVEARRDPDF 151 (289)
T ss_pred cceeee---------------eecccchhcCCCCCCCc--------------------CCHHHHHHHHHHHHHhccCCCe
Q ss_pred EEE------eccCHHH--------HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHH
Q 017781 229 LVK------GVLTAED--------VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 294 (366)
Q Consensus 229 ~vK------~v~~~~d--------~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~ka 294 (366)
++- ++.+.++ .++|||+| .--+..+.+.+.+++++++-.+|+-..=.-.++.-=++-
T Consensus 152 vi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~i---------f~~al~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~ 222 (289)
T COG2513 152 VIIARTDALLVEGLDDAIERAQAYVEAGADAI---------FPEALTDLEEIRAFAEAVPVPLPANITEFGKTPLLTVAE 222 (289)
T ss_pred EEEeehHHHHhccHHHHHHHHHHHHHcCCcEE---------ccccCCCHHHHHHHHHhcCCCeeeEeeccCCCCCcCHHH
Q ss_pred HH-hCcCEEEecHHHHHHhhhcCHHHHHHHHHHHHHH------------HHHHHHHcCCCChhhhcccce
Q 017781 295 LA-LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE------------FELAMALSGCRSLKEITRDHI 351 (366)
Q Consensus 295 la-lGAd~V~igr~~l~~l~~~G~~gv~~~~~~l~~e------------l~~~m~~~G~~~l~el~~~~l 351 (366)
|+ +|-+.|..|-..+.+ .-..+++.++.++++ .+..-.+.++.+..++...+.
T Consensus 223 L~~~Gv~~V~~~~~~~ra----a~~a~~~~~~~i~~~gt~~~~~d~m~~r~~l~~~~~y~~~~~~~~~~~ 288 (289)
T COG2513 223 LAELGVKRVSYGLTAFRA----ALKAAEQAAREIRREGTQANVLDKMQTRKELYDLINYYDYEAKDDELF 288 (289)
T ss_pred HHhcCceEEEECcHHHHH----HHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHhhcHHHHHHHHHhhc
No 494
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=78.22 E-value=48 Score=29.83 Aligned_cols=69 Identities=23% Similarity=0.218 Sum_probs=42.9
Q ss_pred HHcCCcEEEEcCCCccCCCCC-cchHHHHHHHHHHcCCCce--EEEecCCCCHHHHHHH----HHhCcCEEEecHHH
Q 017781 239 VQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIP--VFLDGGVRRGTDVFKA----LALGASGIFIGRPV 308 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~-~~~~~~l~~i~~~~~~~i~--vi~~GGI~~~~dv~ka----lalGAd~V~igr~~ 308 (366)
.+.|||.|.+.-.-|.-.++. ....+.+.++++... .+| +|..-|--+.+.+.++ +.+|||+|-..+-|
T Consensus 79 ~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~-g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~ 154 (203)
T cd00959 79 IADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACG-GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGF 154 (203)
T ss_pred HHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCC
Confidence 678999999764433211111 224556777777664 344 4556565566666654 34799999988655
No 495
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=78.14 E-value=20 Score=32.79 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=47.8
Q ss_pred HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHhCcCEEE
Q 017781 239 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 303 (366)
Q Consensus 239 ~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~kalalGAd~V~ 303 (366)
.+.|.+.|-+.-+ .+...+.++++++..+ --+|..|=|-+++++..+.+.||+++.
T Consensus 35 i~gGi~~IEITl~-------sp~a~e~I~~l~~~~p--~~lIGAGTVL~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 35 IEGGIPAIEITLR-------TPAALEAIRALAKEFP--EALIGAGTVLNPEQARQAIAAGAQFIV 90 (211)
T ss_pred HHcCCCeEEEecC-------CCCHHHHHHHHHHhCc--ccEEccccccCHHHHHHHHHcCCCEEE
Confidence 8999999988653 4567889999988874 348999999999999999999999985
No 496
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=77.87 E-value=35 Score=33.72 Aligned_cols=42 Identities=12% Similarity=0.039 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHcCCCceEEEecCCCC-HHHHHHHHHhC-cCEEEec
Q 017781 262 TIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALG-ASGIFIG 305 (366)
Q Consensus 262 ~~~~l~~i~~~~~~~i~vi~~GGI~~-~~dv~kalalG-Ad~V~ig 305 (366)
.++.+.++++.. .+||.++--+.+ ..+..+++..| +|.|++-
T Consensus 228 d~~~~~~l~~~~--~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d 271 (368)
T cd03329 228 SISSYRWLAEKL--DIPILGTEHSRGALESRADWVLAGATDFLRAD 271 (368)
T ss_pred hHHHHHHHHhcC--CCCEEccCcccCcHHHHHHHHHhCCCCEEecC
Confidence 456677777766 689888888888 89999999887 6777654
No 497
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=77.61 E-value=9.1 Score=33.97 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCCEEEEeccCHHH-HHcCCcEEEEcCCCccCCCCCcchHHHHHHHHHHcCCCceEEEecCCCCHHHHHHH
Q 017781 216 DVKWLQTITKLPILVKGVLTAED-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 294 (366)
Q Consensus 216 ~i~~lr~~~~~pv~vK~v~~~~d-~~aGad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGI~~~~dv~ka 294 (366)
.+..+.+.++.|+++-. ..+- .+.|+|++.+.... . . ...+++.++.. .++...+++..++.++
T Consensus 48 ~l~~~~~~~~~~l~i~~--~~~la~~~g~~GvHl~~~~-------~-~---~~~~r~~~~~~--~~ig~s~h~~~e~~~a 112 (196)
T TIGR00693 48 KLQELCRRYGVPFIVND--RVDLALALGADGVHLGQDD-------L-P---ASEARALLGPD--KIIGVSTHNLEELAEA 112 (196)
T ss_pred HHHHHHHHhCCeEEEEC--HHHHHHHcCCCEEecCccc-------C-C---HHHHHHhcCCC--CEEEEeCCCHHHHHHH
Confidence 45555566688888853 2222 88999999774211 1 1 12233333212 3445669999999999
Q ss_pred HHhCcCEEEecHHH
Q 017781 295 LALGASGIFIGRPV 308 (366)
Q Consensus 295 lalGAd~V~igr~~ 308 (366)
..+|||.+.+|.-|
T Consensus 113 ~~~g~dyi~~~~v~ 126 (196)
T TIGR00693 113 EAEGADYIGFGPIF 126 (196)
T ss_pred hHcCCCEEEECCcc
Confidence 99999999998543
No 498
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=77.59 E-value=61 Score=30.11 Aligned_cols=84 Identities=10% Similarity=0.139 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCcchhHHHhhhcCCCCccccccccccccCCCccccchhhHHHhhhccCCCC
Q 017781 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (366)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (366)
.+.+.+.+.++.+++. ++++-+++-||..- -.|.... ......+. ...
T Consensus 15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~------------adG~~i~---------------~~~~~a~~----~g~ 62 (244)
T PRK13125 15 PNVESFKEFIIGLVEL-VDILELGIPPKYPK------------YDGPVIR---------------KSHRKVKG----LDI 62 (244)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEECCCCCCCC------------CCCHHHH---------------HHHHHHHH----cCc
Confidence 4677788888888887 99999988665320 0000000 00011111 112
Q ss_pred CHHHHHHHHHhcCCCEE--EEe---ccCHHH-----HHcCCcEEEEc
Q 017781 213 SWKDVKWLQTITKLPIL--VKG---VLTAED-----VQAGAAGIIVS 249 (366)
Q Consensus 213 ~~~~i~~lr~~~~~pv~--vK~---v~~~~d-----~~aGad~I~vs 249 (366)
++.++++|+.+++|++ +|. +.++++ .++|+|+|.+.
T Consensus 63 -~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~ 108 (244)
T PRK13125 63 -WPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFP 108 (244)
T ss_pred -HHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEEC
Confidence 6889999988899975 332 234444 99999999985
No 499
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=77.55 E-value=77 Score=31.90 Aligned_cols=67 Identities=15% Similarity=0.044 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCceec-----CCCCCCCHHHHhc--------c---CC--CceEEEeeecCCHHHHHHHHHHHHHcCCCEE
Q 017781 92 ATARAASAAGTIMTL-----SSWSTSSVEEVAS--------T---GP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAI 153 (366)
Q Consensus 92 ~la~aa~~~G~~~~v-----s~~~~~~~e~i~~--------~---~~--~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai 153 (366)
.++.....-|+-++= .++..++.+|..+ + .. .-+.+++. .+.+.+.+..++++++|++++
T Consensus 144 ~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT--~~~~em~~ra~~~~~~G~~~~ 221 (391)
T cd08209 144 EQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNLT--GPVFTLKEKARRLVEAGANAL 221 (391)
T ss_pred HHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcC--CCHHHHHHHHHHHHHhCCCEE
Confidence 455555556666653 3344455554321 1 11 23566665 456778888888889999999
Q ss_pred EEecCCC
Q 017781 154 ALTVDTP 160 (366)
Q Consensus 154 ~vtvd~p 160 (366)
++++..-
T Consensus 222 mv~~~~~ 228 (391)
T cd08209 222 LFNVFAY 228 (391)
T ss_pred EEecccc
Confidence 9877653
No 500
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=77.51 E-value=27 Score=33.95 Aligned_cols=20 Identities=10% Similarity=0.147 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCCEEEEec
Q 017781 214 WKDVKWLQTITKLPILVKGV 233 (366)
Q Consensus 214 ~~~i~~lr~~~~~pv~vK~v 233 (366)
.+.|+.+|+.+++||.+=.|
T Consensus 251 LDIi~~~k~~~~lPvaaYqV 270 (320)
T cd04823 251 LDIIRRVKDEFGVPTFAYQV 270 (320)
T ss_pred HHHHHHHHHhcCCCEEEEEc
Confidence 45677777777777776654
Done!