BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017782
         (366 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
           Superoxide Dismutase Q146h Mutant
 pdb|1EN4|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
           Superoxide Dismutase Q146h Mutant
 pdb|1EN4|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
           Superoxide Dismutase Q146h Mutant
 pdb|1EN4|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
           Superoxide Dismutase Q146h Mutant
          Length = 205

 Score = 32.7 bits (73), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 11/105 (10%)

Query: 172 SGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSAPA-FDESNSSLWGSGEWWMLLA 230
           +G +A  S+F   L   +  QG L   ++R    + +  A F+++ +S +GSG  W++L 
Sbjct: 75  AGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLK 134

Query: 231 AQSMAVGTVMVRWVSKYSDPVMATGWHMVIG--GLPLMVISVLNH 273
              +AV +      + +  P+M      + G  G P+M + V  H
Sbjct: 135 GDKLAVVS-----TANHDSPLMGEA---ISGASGFPIMGLDVWEH 171


>pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
           Superoxide Dismutase Y34f Mutant
 pdb|1EN5|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
           Superoxide Dismutase Y34f Mutant
 pdb|1EN5|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
           Superoxide Dismutase Y34f Mutant
 pdb|1EN5|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
           Superoxide Dismutase Y34f Mutant
          Length = 205

 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 172 SGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSAPA-FDESNSSLWGSGEWWMLLA 230
           +G +A  S+F   L   +  QG L   ++R    + +  A F+++ +S +GSG  W++L 
Sbjct: 75  AGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLK 134

Query: 231 AQSMAVGTVMVRWVSKYSDPVMATGWHMVIG--GLPLMVISVLNH 273
              +AV +      +    P+M      + G  G P+M + V  H
Sbjct: 135 GDKLAVVS-----TANQDSPLMGEA---ISGASGFPIMGLDVWEH 171


>pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Manganese Superoxide
           Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
 pdb|1I0H|B Chain B, Crystal Structure Of The E. Coli Manganese Superoxide
           Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
 pdb|1IX9|A Chain A, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
           Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
 pdb|1IX9|B Chain B, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
           Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
 pdb|1IXB|A Chain A, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
           Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
 pdb|1IXB|B Chain B, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
           Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
 pdb|1ZLZ|A Chain A, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
           Superoxide Dismutase
 pdb|1ZLZ|B Chain B, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
           Superoxide Dismutase
          Length = 205

 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 172 SGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSAPA-FDESNSSLWGSGEWWMLLA 230
           +G +A  S+F   L   +  QG L   ++R    + +  A F+++ +S +GSG  W++L 
Sbjct: 75  AGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLK 134

Query: 231 AQSMAVGTVMVRWVSKYSDPVMATGWHMVIG--GLPLMVISVLNH 273
              +AV +      +    P+M      + G  G P+M + V  H
Sbjct: 135 GDKLAVVS-----TANQDSPLMGEA---ISGASGFPIMGLDVWEH 171


>pdb|1VEW|A Chain A, Manganese Superoxide Dismutase From Escherichia Coli
 pdb|1VEW|B Chain B, Manganese Superoxide Dismutase From Escherichia Coli
 pdb|1VEW|C Chain C, Manganese Superoxide Dismutase From Escherichia Coli
 pdb|1VEW|D Chain D, Manganese Superoxide Dismutase From Escherichia Coli
 pdb|1MMM|A Chain A, Distinct Metal Environment In Iron-Substituted Manganese
           Superoxide Dismutase Provides A Structural Basis Of
           Metal Specificity
 pdb|1MMM|B Chain B, Distinct Metal Environment In Iron-Substituted Manganese
           Superoxide Dismutase Provides A Structural Basis Of
           Metal Specificity
 pdb|1D5N|A Chain A, Crystal Structure Of E. Coli Mnsod At 100k
 pdb|1D5N|B Chain B, Crystal Structure Of E. Coli Mnsod At 100k
 pdb|1D5N|C Chain C, Crystal Structure Of E. Coli Mnsod At 100k
 pdb|1D5N|D Chain D, Crystal Structure Of E. Coli Mnsod At 100k
 pdb|3K9S|A Chain A, Crystal Structure Of The Peroxide-Bound Manganese
           Superoxide Dismutase.
 pdb|3K9S|B Chain B, Crystal Structure Of The Peroxide-Bound Manganese
           Superoxide Dismutase.
 pdb|3K9S|C Chain C, Crystal Structure Of The Peroxide-Bound Manganese
           Superoxide Dismutase.
 pdb|3K9S|D Chain D, Crystal Structure Of The Peroxide-Bound Manganese
           Superoxide Dismutase.
 pdb|3OT7|A Chain A, Escherichia Coli Apo-Manganese Superoxide Dismutase
 pdb|3OT7|B Chain B, Escherichia Coli Apo-Manganese Superoxide Dismutase
 pdb|3OT7|C Chain C, Escherichia Coli Apo-Manganese Superoxide Dismutase
 pdb|3OT7|D Chain D, Escherichia Coli Apo-Manganese Superoxide Dismutase
          Length = 205

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 172 SGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSAPA-FDESNSSLWGSGEWWMLLA 230
           +G +A  S+F   L   +  QG L   ++R    + +  A F+++ +S +GSG  W++L 
Sbjct: 75  AGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLK 134

Query: 231 AQSMAVGTVMVRWVSKYSDPVMATGWHMVIG--GLPLMVISVLNH 273
              +AV +      +    P+M      + G  G P+M + V  H
Sbjct: 135 GDKLAVVS-----TANQDSPLMGEA---ISGASGFPIMGLDVWEH 171


>pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a Mutant Of Manganese
           Superoxide Dismutase From E. Coli
 pdb|1I08|B Chain B, Crystal Structure Analysis Of The H30a Mutant Of Manganese
           Superoxide Dismutase From E. Coli
 pdb|1I08|C Chain C, Crystal Structure Analysis Of The H30a Mutant Of Manganese
           Superoxide Dismutase From E. Coli
 pdb|1I08|D Chain D, Crystal Structure Analysis Of The H30a Mutant Of Manganese
           Superoxide Dismutase From E. Coli
          Length = 205

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 172 SGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSAPA-FDESNSSLWGSGEWWMLLA 230
           +G +A  S+F   L   +  QG L   ++R    + +  A F+++ +S +GSG  W++L 
Sbjct: 75  AGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLK 134

Query: 231 AQSMAVGTVMVRWVSKYSDPVMATGWHMVIG--GLPLMVISVLNH 273
              +AV +      +    P+M      + G  G P+M + V  H
Sbjct: 135 GDKLAVVS-----TANQDSPLMGEA---ISGASGFPIMGLDVWEH 171


>pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
           Superoxide Dismutase Q146l Mutant
 pdb|1EN6|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
           Superoxide Dismutase Q146l Mutant
 pdb|1EN6|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
           Superoxide Dismutase Q146l Mutant
 pdb|1EN6|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
           Superoxide Dismutase Q146l Mutant
          Length = 205

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 172 SGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSAPA-FDESNSSLWGSGEWWMLLA 230
           +G +A  S+F   L   +  QG L   ++R    + +  A F+++ +S +GSG  W++L 
Sbjct: 75  AGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLK 134

Query: 231 AQSMAVGTVMVRWVSKYSDPVMATGWHMVIG--GLPLMVISVLNH 273
              +AV +      +    P+M      + G  G P+M + V  H
Sbjct: 135 GDKLAVVS-----TANLDSPLMGEA---ISGASGFPIMGLDVWEH 171


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,769,944
Number of Sequences: 62578
Number of extensions: 322096
Number of successful extensions: 608
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 7
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)