Query 017782
Match_columns 366
No_of_seqs 205 out of 1620
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 04:51:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.0 1.1E-09 3.8E-14 89.9 7.5 71 294-364 34-105 (137)
2 3b5d_A Multidrug transporter E 98.8 2.5E-08 8.5E-13 78.9 9.9 70 295-364 35-105 (110)
3 2i68_A Protein EMRE; transmemb 40.5 1.2E+02 0.0043 23.7 8.0 26 182-207 34-59 (137)
4 3b5d_A Multidrug transporter E 28.3 1.8E+02 0.0063 21.6 13.6 66 182-265 34-100 (110)
5 4dx5_A Acriflavine resistance 11.1 7.2E+02 0.025 26.2 9.0 52 303-354 884-935 (1057)
6 1zk9_A Transcription factor RE 8.7 3.2E+02 0.011 20.6 3.6 40 31-70 58-99 (110)
7 4dx5_A Acriflavine resistance 8.7 7.9E+02 0.027 26.0 8.1 26 328-353 376-401 (1057)
8 2v50_A Multidrug resistance pr 8.5 8.4E+02 0.029 25.8 8.2 26 328-353 376-401 (1052)
9 3ne5_A Cation efflux system pr 8.0 6.8E+02 0.023 26.4 7.2 56 300-355 887-942 (1054)
10 2l2t_A Receptor tyrosine-prote 7.8 4E+02 0.014 16.5 3.1 9 161-169 30-38 (44)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.96 E-value=1.1e-09 Score=89.89 Aligned_cols=71 Identities=8% Similarity=0.165 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhhHHHh-hhhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHhcccC
Q 017782 294 YTSIFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 364 (366)
Q Consensus 294 ~~gv~~~~l~~~l~~~al~~~~a~~~s~~-~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~g~~l~~~~~ 364 (366)
.+++++++++++++++++|+.+++++.++ .++.|+++++++++++||++++.+++|.++|++|++++.+.+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35677889999999999999999999999 899999999999999999999999999999999999987644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.80 E-value=2.5e-08 Score=78.91 Aligned_cols=70 Identities=9% Similarity=0.173 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHh-hhhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHhcccC
Q 017782 295 TSIFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 364 (366)
Q Consensus 295 ~gv~~~~l~~~l~~~al~~~~a~~~s~~-~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~g~~l~~~~~ 364 (366)
.++++.+++++++.+++|+.+.+.+.++ ..+.|+++++++++++||++++.+++|.++|+.|++++...+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5667788899999999999999999998 899999999999999999999999999999999999988754
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=40.51 E-value=1.2e+02 Score=23.74 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccc
Q 017782 182 LFALVDASCFQGFLAQGLQRTSAGLG 207 (366)
Q Consensus 182 ~~g~l~~~~~~~~~~~al~~~~~~~a 207 (366)
+.+++..++.+.++.+++++.+++.+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~a 59 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIA 59 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHH
Confidence 45666677777888889988888654
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=28.29 E-value=1.8e+02 Score=21.55 Aligned_cols=66 Identities=12% Similarity=0.162 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccccCCCCccchHHHHHHHHHHHHHHHHHHHHHH-hhcCCChHHHHHHHHHH
Q 017782 182 LFALVDASCFQGFLAQGLQRTSAGLGSAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRW-VSKYSDPVMATGWHMVI 260 (366)
Q Consensus 182 ~~g~l~~~~~~~~~~~al~~~~~~~a~~P~~~~~~~~~~~~G~l~allaa~~~a~~~v~~r~-~~~~~~~~~~~~~~~~~ 260 (366)
+.+++.....+.++..++++.|.+.+ .++..++......+.... +.++.+.....+...++
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~a------------------y~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi 95 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIA------------------YAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLIC 95 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhH------------------HHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 45556666777788889988887544 222222222223333322 34556666666655555
Q ss_pred HHHHH
Q 017782 261 GGLPL 265 (366)
Q Consensus 261 ~~v~~ 265 (366)
.++..
T Consensus 96 ~Gv~~ 100 (110)
T 3b5d_A 96 AGVLI 100 (110)
T ss_pred HHHHH
Confidence 55443
No 5
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=11.09 E-value=7.2e+02 Score=26.23 Aligned_cols=52 Identities=13% Similarity=0.020 Sum_probs=33.4
Q ss_pred HHHHHHHHhccCChhhHHHhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 017782 303 SYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTV 354 (366)
Q Consensus 303 ~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl 354 (366)
-+.+.....+........++...--+.+.+.+..++|..++...++|.++++
T Consensus 884 i~l~L~~~f~s~~~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~ 935 (1057)
T 4dx5_A 884 VFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTI 935 (1057)
T ss_dssp HHHHHHHHHTCSSTHHHHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 3444444555555555555555555566677777789999998888876553
No 6
>1zk9_A Transcription factor RELB; NF-KB, transcription factors, intertwined dimer; 2.18A {Mus musculus} PDB: 1zka_A 3jv6_A 3jv4_A 3jss_A 3juz_A 3jv0_A
Probab=8.74 E-value=3.2e+02 Score=20.63 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=28.5
Q ss_pred cccCccccCCCCCC--Cccccccccccccceeeecccccccc
Q 017782 31 LSSNHVAHAPPSLF--SPYITINSFKKRCIIVTNCTTTNKKN 70 (366)
Q Consensus 31 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (366)
.+++.+||-+-|-| +||.+....+.....+-.++++.+..
T Consensus 58 f~~~Dvh~Q~aIvf~tPpY~~~~I~~pV~V~i~L~r~sd~~~ 99 (110)
T 1zk9_A 58 FSQADVHRQIAIVFKTPPYEDLEISEPVTVNVFLQRLTDGVC 99 (110)
T ss_dssp CCGGGCCCCCCCCCCCCCCSCTTCSSCEEEEECCBCTTTCCB
T ss_pred cCcccccccceEEEECCCCCCcccCCCeEEEEEEEeCCCCCc
Confidence 35577888888888 77777777777777777776554443
No 7
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=8.67 E-value=7.9e+02 Score=25.95 Aligned_cols=26 Identities=12% Similarity=0.313 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHH
Q 017782 328 MFASIFGFLYLGETFSPLQLVGAAVT 353 (366)
Q Consensus 328 v~a~i~~~l~lgE~~~~~~~vG~~lI 353 (366)
+++.+....++|..++...++|.++.
T Consensus 376 ~~~~~~~l~~~g~~ln~~sl~gl~~~ 401 (1057)
T 4dx5_A 376 LLGTFAVLAAFGFSINTLTMFGMVLA 401 (1057)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 34444444556777777666665433
No 8
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=8.47 E-value=8.4e+02 Score=25.75 Aligned_cols=26 Identities=12% Similarity=0.276 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHH
Q 017782 328 MFASIFGFLYLGETFSPLQLVGAAVT 353 (366)
Q Consensus 328 v~a~i~~~l~lgE~~~~~~~vG~~lI 353 (366)
++..+....++|..++...++|.++.
T Consensus 376 ~~~~~~~l~~~g~~ln~~s~~gl~~~ 401 (1052)
T 2v50_A 376 LLGTFGVLAAFGFSINTLTMFGMVLA 401 (1052)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33444445556777777776654433
No 9
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=8.02 E-value=6.8e+02 Score=26.44 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhccCChhhHHHhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 017782 300 SAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVV 355 (366)
Q Consensus 300 ~~l~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~ 355 (366)
.++-+.+.....+........++...--+.+.+.+..++|..++...++|.+++++
T Consensus 887 l~li~l~L~~~f~S~~~~l~il~~ip~~~~g~~~~l~l~g~~l~~~~~~g~i~l~G 942 (1054)
T 3ne5_A 887 LMIIFVLLYLAFRRVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAG 942 (1054)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTTSHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHH
Confidence 34445555555555555555555555566677777888999999999998776544
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=7.76 E-value=4e+02 Score=16.51 Aligned_cols=9 Identities=0% Similarity=-0.145 Sum_probs=3.6
Q ss_pred HHHHHhCCC
Q 017782 161 TFASSQGRK 169 (366)
Q Consensus 161 ~~~~~~~~~ 169 (366)
.+++.++|+
T Consensus 30 ~~~~~RRRr 38 (44)
T 2l2t_A 30 FAVYVRRKS 38 (44)
T ss_dssp HHHHHHTTC
T ss_pred HHHHhhhhh
Confidence 333444433
Done!