Query 017782
Match_columns 366
No_of_seqs 205 out of 1620
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 04:51:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017782.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017782hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 21.7 46 0.0033 16.7 2.7 17 222-238 3-19 (27)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 5.4 2.5E+02 0.019 15.0 3.1 17 222-238 19-35 (37)
3 d1u36a_ b.1.18.1 (A:) p50 subu 4.4 1.7E+02 0.013 20.0 1.8 41 29-69 50-92 (104)
4 d1a3qa1 b.1.18.1 (A:227-327) p 4.2 1.7E+02 0.012 20.0 1.6 40 30-69 49-90 (101)
5 d1iwga8 f.35.1.1 (A:513-566,A: 3.3 8.5E+02 0.062 18.0 9.2 48 308-355 75-122 (222)
6 g6rlx.1 g.1.1.1 (B:,A:) Relaxi 3.2 1E+02 0.0073 18.0 -0.4 8 2-9 25-32 (51)
7 d1my7a_ b.1.18.1 (A:) p65 subu 2.9 2.5E+02 0.018 19.3 1.5 40 30-69 48-89 (107)
8 d1nyca_ b.61.2.2 (A:) Staphost 2.9 1.2E+02 0.0086 20.2 -0.3 34 3-36 32-65 (111)
9 d1q90a3 f.23.23.1 (A:248-292) 2.9 5E+02 0.037 14.6 2.6 27 114-140 4-30 (45)
10 d1iwga7 f.35.1.1 (A:7-37,A:331 2.8 9.1E+02 0.066 17.5 8.1 46 311-356 60-105 (199)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=21.65 E-value=46 Score=16.66 Aligned_cols=17 Identities=18% Similarity=-0.005 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017782 222 SGEWWMLLAAQSMAVGT 238 (366)
Q Consensus 222 ~G~l~allaa~~~a~~~ 238 (366)
.|.+.+-+++++||.|-
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 47788888888888774
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.45 E-value=2.5e+02 Score=15.01 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017782 222 SGEWWMLLAAQSMAVGT 238 (366)
Q Consensus 222 ~G~l~allaa~~~a~~~ 238 (366)
+|.++.+.-++.|+-|.
T Consensus 19 ~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 19 LGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 57777777777777665
No 3
>d1u36a_ b.1.18.1 (A:) p50 subunit of NF-kappa B transcription factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.37 E-value=1.7e+02 Score=20.03 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=28.3
Q ss_pred cccccCccccCCCCCC--Cccccccccccccceeeeccccccc
Q 017782 29 KKLSSNHVAHAPPSLF--SPYITINSFKKRCIIVTNCTTTNKK 69 (366)
Q Consensus 29 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (366)
.+.+++.+||-+-|-| +||.+....+.-...+..++++++.
T Consensus 50 ~~f~~~dvh~Q~aIvf~tPpY~~~~I~~pV~V~i~l~r~sd~~ 92 (104)
T d1u36a_ 50 GDFSPTDVHRQFAICFKTPKYKDVNITKPASVFVQLRRKSDLE 92 (104)
T ss_dssp CBCCGGGEETTTEEEEECCCCSCTTCSSCEEEEEEEECTTTCC
T ss_pred EEEChhhcccceEEEEECCCCCCCccCCcEEEEEEEEeCCCCC
Confidence 3445677787777766 7888888777777777666555444
No 4
>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.23 E-value=1.7e+02 Score=19.99 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=27.9
Q ss_pred ccccCccccCCCCCC--Cccccccccccccceeeeccccccc
Q 017782 30 KLSSNHVAHAPPSLF--SPYITINSFKKRCIIVTNCTTTNKK 69 (366)
Q Consensus 30 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (366)
+.+++.+|+-+-|-| +||.+....+.-...+..++++.++
T Consensus 49 ~f~~~dvh~q~aIvfktPpY~~~~I~~pV~V~i~l~r~sd~~ 90 (101)
T d1a3qa1 49 DFSPTDVHKQYAIVFRTPPYHKMKIERPVTVFLQLKRKRGGD 90 (101)
T ss_dssp BCCGGGEETTTEEEEECCCCSCTTCSSCEEEEEEEEETTTCC
T ss_pred EeCHHHcccceEEEEECCCCCCcccCCcEEEEEEEEECCCCC
Confidence 456778888887765 7788887777777667666544443
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.29 E-value=8.5e+02 Score=18.01 Aligned_cols=48 Identities=15% Similarity=0.001 Sum_probs=28.9
Q ss_pred HHHhccCChhhHHHhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 017782 308 FYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVV 355 (366)
Q Consensus 308 ~~al~~~~a~~~s~~~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~ 355 (366)
..-.+......+.+...---+.+.+++..+.|.+++....+|.++.++
T Consensus 75 ~~~frS~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 75 AALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHTTCSSSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchhh
Confidence 333444444444333332334556677778899999988888776544
No 6
>g6rlx.1 g.1.1.1 (B:,A:) Relaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.24 E-value=1e+02 Score=18.01 Aligned_cols=8 Identities=38% Similarity=0.514 Sum_probs=1.8
Q ss_pred cccccccc
Q 017782 2 AWWSSASA 9 (366)
Q Consensus 2 ~~~~~~~~ 9 (366)
.||+++++
T Consensus 25 s~w~~~~~ 32 (51)
T g6rlx.1 25 STWELYSA 32 (51)
T ss_dssp SCC-----
T ss_pred chhccchh
Confidence 46655544
No 7
>d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB), dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.93 E-value=2.5e+02 Score=19.28 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=27.2
Q ss_pred ccccCccccCCCCCC--Cccccccccccccceeeeccccccc
Q 017782 30 KLSSNHVAHAPPSLF--SPYITINSFKKRCIIVTNCTTTNKK 69 (366)
Q Consensus 30 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (366)
+.+++.+||-+-|-| +||......+.-...+..+.++.++
T Consensus 48 ~f~~~dvh~Q~aIvfktPpY~~~~I~~pV~V~i~l~r~sd~~ 89 (107)
T d1my7a_ 48 SFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRE 89 (107)
T ss_dssp BCCGGGBCTTSEEEEECCCCSCTTCCSCEEEEEEEEETTTTE
T ss_pred EcCHHHcccccEEEEECCCCCCCcCCCCEEEEEEEEECCCCC
Confidence 445677888776666 7788887777777777666545443
No 8
>d1nyca_ b.61.2.2 (A:) Staphostatin B (SspC) {Staphylococcus aureus [TaxId: 1280]}
Probab=2.92 E-value=1.2e+02 Score=20.21 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=22.0
Q ss_pred ccccccccccccchhhhhcccccccccccccCcc
Q 017782 3 WWSSASASSTFNSSFLLRSSLSSYSNKKLSSNHV 36 (366)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (366)
-|+|.+++-+-+.|---|-+-++|---..+..|.
T Consensus 32 nw~n~~~qksi~ir~g~dt~hnqy~il~idt~hq 65 (111)
T d1nyca_ 32 NWSNHQLQKSICIRHGDDTSHNQYHILFIDTAHQ 65 (111)
T ss_dssp EEEETTTTEEEEEEEECTTCSSEEEEEEEETTTT
T ss_pred ccCChhHhccEEEEeCCCCCCceEEEEEEechhh
Confidence 4899999888888866666666654433333343
No 9
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.90 E-value=5e+02 Score=14.56 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhhc
Q 017782 114 MLLEWAVLVSPFFFWGTAMVAMKEVLP 140 (366)
Q Consensus 114 ~~~g~l~llla~~~~g~~~~~~k~~~~ 140 (366)
+..|+++.+.+.++--..-++=|.-.+
T Consensus 4 Rv~gll~F~~~v~laQi~LVLKKKQfE 30 (45)
T d1q90a3 4 RIQGLLVFFSFVLLTQVLLVLKKKQFE 30 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345665555554444444444443333
No 10
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=2.84 E-value=9.1e+02 Score=17.45 Aligned_cols=46 Identities=9% Similarity=0.150 Sum_probs=26.8
Q ss_pred hccCChhhHHHhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHH
Q 017782 311 ATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVA 356 (366)
Q Consensus 311 l~~~~a~~~s~~~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~g 356 (366)
++.........+.....+...+....++|.+++.....+..++++.
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi 105 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGL 105 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 4445555555555555555555556667777777766666655443
Done!