BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017783
         (366 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 66/71 (92%)

Query: 179 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITT 238
           VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCT PGC VRKHVERA+ D +AV+TT
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67

Query: 239 YEGKHNHDVPA 249
           YEGKHNHD+PA
Sbjct: 68  YEGKHNHDLPA 78



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 17 KYGQKQVKGSENPRSYYKCTFPSCPTKKKVER-SLDGQITEIVYKGSHNHPKP 68
          KYGQK VKG+  PRSYYKCT P C  +K VER + D +     Y+G HNH  P
Sbjct: 25 KYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77


>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 64/73 (87%)

Query: 176 RVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAV 235
           R+VV T +  DI++DGYRWRKYGQK VKG+P PRSYY+C+ PGCPV+KHVER+SHD + +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 236 ITTYEGKHNHDVP 248
           ITTYEGKH+HD+P
Sbjct: 62  ITTYEGKHDHDMP 74



 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 16 EKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPKP 68
           KYGQK VKGS  PRSYY+C+ P CP KK VERS  D ++    Y+G H+H  P
Sbjct: 21 RKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74


>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6
           Subunit Iii, A Highly Structured Truncated Zymogen E
 pdb|1FON|B Chain B, Crystal Structure Of Bovine Procarboxypeptidase A-S6
           Subunit Iii, A Highly Structured Truncated Zymogen E
          Length = 240

 Score = 31.2 bits (69), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 23/36 (63%)

Query: 155 WKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDD 190
           W++ G +  +SA G  T+++P V  + ++ ID +D+
Sbjct: 200 WQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDE 235


>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
           PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
 pdb|1WQA|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
           PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
 pdb|1WQA|C Chain C, Crystal Structure Of Pyrococcus Horikoshii
           PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
 pdb|1WQA|D Chain D, Crystal Structure Of Pyrococcus Horikoshii
           PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
          Length = 455

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 12/85 (14%)

Query: 145 FDEDEPEAKRWKI-EGESEGISAPGSRTV-----------REPRVVVQTTSDIDILDDGY 192
           F ED   AK ++I E   E I  P    +           R+P VVV T++    L   Y
Sbjct: 133 FKEDFDRAKWYEIGEVRREDIIKPYIEAIKSKVDVEAIKKRKPFVVVDTSNGAGSLTLPY 192

Query: 193 RWRKYGQKVVKGNPNPRSYYKCTHP 217
             R+ G KV+  N  P  Y+   +P
Sbjct: 193 LLRELGCKVITVNAQPDGYFPARNP 217


>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
           And Chymotrypsinogen C
          Length = 253

 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 10/36 (27%), Positives = 23/36 (63%)

Query: 155 WKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDD 190
           W++ G +  +SA G  T+++P V  + ++ ID +++
Sbjct: 213 WQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWINE 248


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.130    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,490,377
Number of Sequences: 62578
Number of extensions: 395903
Number of successful extensions: 457
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 450
Number of HSP's gapped (non-prelim): 8
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)