Query 017783
Match_columns 366
No_of_seqs 319 out of 1226
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 04:52:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 6.9E-36 2.3E-40 237.6 5.4 75 175-249 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 9.2E-36 3.1E-40 237.9 4.1 75 175-249 4-78 (78)
3 2ayd_A WRKY transcription fact 100.0 7.1E-32 2.4E-36 214.5 5.3 66 4-69 9-75 (76)
4 1wj2_A Probable WRKY transcrip 100.0 7.2E-32 2.5E-36 215.4 4.7 67 3-69 11-78 (78)
5 2rpr_A Flywch-type zinc finger 74.6 1.6 5.5E-05 34.0 2.4 51 186-249 22-75 (87)
6 2rpr_A Flywch-type zinc finger 65.9 3.3 0.00011 32.2 2.5 49 8-68 23-74 (87)
7 1odh_A MGCM1; transcription fa 28.1 39 0.0013 30.4 3.2 37 212-251 123-160 (174)
8 1odh_A MGCM1; transcription fa 21.6 59 0.002 29.2 3.1 13 58-70 147-159 (174)
9 1cz6_A Protein (androctonin); 18.8 24 0.00083 22.2 0.0 8 210-217 16-23 (26)
10 1xiw_B T-cell surface glycopro 8.9 36 0.0012 26.2 -1.7 28 10-37 17-54 (79)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=6.9e-36 Score=237.60 Aligned_cols=75 Identities=68% Similarity=1.313 Sum_probs=72.9
Q ss_pred CceeeeeccccccCCCCchhhhccccccCCCCCCcccccccCCCCCcccchhhccCCCCeEEEEEecccCCCCCC
Q 017783 175 PRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA 249 (366)
Q Consensus 175 ~rvvv~t~s~~~~~dDGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~tY~G~HnH~~p~ 249 (366)
.||+|+|.+++++++|||+|||||||.|||+++||+|||||++||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 379999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=9.2e-36 Score=237.88 Aligned_cols=75 Identities=79% Similarity=1.322 Sum_probs=69.8
Q ss_pred CceeeeeccccccCCCCchhhhccccccCCCCCCcccccccCCCCCcccchhhccCCCCeEEEEEecccCCCCCC
Q 017783 175 PRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA 249 (366)
Q Consensus 175 ~rvvv~t~s~~~~~dDGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~tY~G~HnH~~p~ 249 (366)
.+|+|+|.+++++++|||+|||||||.|||+++||+|||||+++|+|+|+|||+++|+.+++|||+|+|||+.|+
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.97 E-value=7.1e-32 Score=214.53 Aligned_cols=66 Identities=45% Similarity=0.771 Sum_probs=62.1
Q ss_pred cCCccCCCCCCcccccCCCCCCCCCCCCcccCCCCCCCccceeeeec-CCceEEEEecCCCCCCCCC
Q 017783 4 SGIHKARCEIGTEKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPKPQ 69 (366)
Q Consensus 4 ~~~~~~~Dgy~WRKYGQK~IkGs~~pRsYYrCt~~~C~akK~Vers~-Dg~i~~i~Y~G~HnH~~P~ 69 (366)
+.+..++|||+|||||||.|||++|||+|||||+++|+|+|+|||+. |+.+++|||+|+|||+.|.
T Consensus 9 ~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 9 TLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 56788999999999999999999999999999999999999999985 6789999999999999885
No 4
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.97 E-value=7.2e-32 Score=215.41 Aligned_cols=67 Identities=45% Similarity=0.716 Sum_probs=62.4
Q ss_pred ccCCccCCCCCCcccccCCCCCCCCCCCCcccCCCCCCCccceeeeec-CCceEEEEecCCCCCCCCC
Q 017783 3 LSGIHKARCEIGTEKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPKPQ 69 (366)
Q Consensus 3 ~~~~~~~~Dgy~WRKYGQK~IkGs~~pRsYYrCt~~~C~akK~Vers~-Dg~i~~i~Y~G~HnH~~P~ 69 (366)
++.+..++|||+|||||||.|||++|||+|||||+++|+|+|+|||+. |+.+++|||+|+|||+.|.
T Consensus 11 ~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 11 TSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred cCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 456788999999999999999999999999999999999999999984 7789999999999999883
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=74.61 E-value=1.6 Score=34.01 Aligned_cols=51 Identities=18% Similarity=0.400 Sum_probs=33.0
Q ss_pred ccCCCCchhhhccccccCCCCCCcccccccC---CCCCcccchhhccCCCCeEEEEEecccCCCCCC
Q 017783 186 DILDDGYRWRKYGQKVVKGNPNPRSYYKCTH---PGCPVRKHVERASHDLRAVITTYEGKHNHDVPA 249 (366)
Q Consensus 186 ~~~dDGy~WRKYGQK~ikgn~~pRsYYrCt~---~gC~akK~Ver~~~D~~~~~~tY~G~HnH~~p~ 249 (366)
-++-|||.-.+--+ ...+.|.+|+. .+|.|+-.... + .+ .-.+.|||++..
T Consensus 22 ~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~--~~--~~~~~HnH~p~~ 75 (87)
T 2rpr_A 22 FLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---H--RI--MVMRSHCHQPDL 75 (87)
T ss_dssp EEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---T--EE--EECSCCSSCCCH
T ss_pred EEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---C--CE--ECCCCcCCCCch
Confidence 35568998775321 13468999986 58999865432 2 23 357899997653
No 6
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=65.88 E-value=3.3 Score=32.19 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=29.0
Q ss_pred cCCCCCCcccccCCCCCCCCCCCCcccCCC---CCCCccceeeeecCCceEEEEecCCCCCCCC
Q 017783 8 KARCEIGTEKYGQKQVKGSENPRSYYKCTF---PSCPTKKKVERSLDGQITEIVYKGSHNHPKP 68 (366)
Q Consensus 8 ~~~Dgy~WRKYGQK~IkGs~~pRsYYrCt~---~~C~akK~Vers~Dg~i~~i~Y~G~HnH~~P 68 (366)
++-|||...+--+ ...+.|.+|+. .+|.|+=. .. .++ ++-.+.|||++.
T Consensus 23 Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~-T~-~~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 23 LVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAI-TQ-GHR----IMVMRSHCHQPD 74 (87)
T ss_dssp EEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEE-EE-TTE----EEECSCCSSCCC
T ss_pred EEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEE-Ec-CCC----EECCCCcCCCCc
Confidence 3445665554221 13478999986 47999633 22 222 345789999753
No 7
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=28.15 E-value=39 Score=30.35 Aligned_cols=37 Identities=35% Similarity=0.656 Sum_probs=24.7
Q ss_pred cccc-CCCCCcccchhhccCCCCeEEEEEecccCCCCCCCC
Q 017783 212 YKCT-HPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAAR 251 (366)
Q Consensus 212 YrCt-~~gC~akK~Ver~~~D~~~~~~tY~G~HnH~~p~~r 251 (366)
+.|. +-|=||. ++-| +|...+...-+|.|+|+.|.+.
T Consensus 123 ~~Crgh~GyPVT-hFWr--h~~~~ifFqaKG~HDHpRPe~k 160 (174)
T 1odh_A 123 IPCRGHGGFPVT-NFWR--HDGRFIFFQSKGEHDHPRPETK 160 (174)
T ss_dssp ECCCTBTTBCCE-EEEE--ECSSBEEEEEECCCCSCCCCCH
T ss_pred EeccCcCCCcce-EEEE--EcCCEEEEecccccCCCCCCCc
Confidence 4554 2455553 3555 3556666778999999999875
No 8
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=21.64 E-value=59 Score=29.18 Aligned_cols=13 Identities=46% Similarity=1.073 Sum_probs=10.7
Q ss_pred EecCCCCCCCCCC
Q 017783 58 VYKGSHNHPKPQS 70 (366)
Q Consensus 58 ~Y~G~HnH~~P~~ 70 (366)
--+|.|.||+|..
T Consensus 147 qaKG~HDHpRPe~ 159 (174)
T 1odh_A 147 QSKGEHDHPRPET 159 (174)
T ss_dssp EEECCCCSCCCCC
T ss_pred ecccccCCCCCCC
Confidence 3479999999965
No 9
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=18.82 E-value=24 Score=22.23 Aligned_cols=8 Identities=63% Similarity=1.381 Sum_probs=6.3
Q ss_pred ccccccCC
Q 017783 210 SYYKCTHP 217 (366)
Q Consensus 210 sYYrCt~~ 217 (366)
-||+||+.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999973
No 10
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=8.90 E-value=36 Score=26.21 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=18.8
Q ss_pred CCCCCcccccCCC--------CC--CCCCCCCcccCCC
Q 017783 10 RCEIGTEKYGQKQ--------VK--GSENPRSYYKCTF 37 (366)
Q Consensus 10 ~Dgy~WRKYGQK~--------Ik--Gs~~pRsYYrCt~ 37 (366)
..++.|-|-|... +. ...-||++|.|..
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~ 54 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNG 54 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecC
Confidence 4568899988652 23 2355999999943
Done!