BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017786
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 274 bits (701), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 142/294 (48%), Positives = 179/294 (60%), Gaps = 13/294 (4%)
Query: 79 TTKFRKRPPLRRGRVSPRLPVPDHIPKPPYVS-----STSLPDLSPEYQIH--DSESIAK 131
T K R PL P PVP +I +P Y S S L QI SE I
Sbjct: 5 TGKLRPHYPL-----MPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEG 59
Query: 132 MRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVN 191
MR C LA VLD A +++P VTT EID AVH I YPSPL Y FPKS CTSVN
Sbjct: 60 MRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVN 119
Query: 192 ECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEK 251
E +CHGIPD R LQ+GDI+N+D+T+Y NGYHGD ++TF G V DG ++LV+ T ECL +
Sbjct: 120 EVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQ 179
Query: 252 GIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYHN-RNENPGCM 310
I K G ++++G I +HA+ GF VV + GHG+ K+FH+ P + H +N+ G M
Sbjct: 180 AIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVM 239
Query: 311 VEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
G FTIEP++ G + TWPD WT +T DG +AQFEHT+L+T TG EILT
Sbjct: 240 KSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILT 293
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 274 bits (701), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 143/300 (47%), Positives = 181/300 (60%), Gaps = 13/300 (4%)
Query: 73 ERELQTTTKFRKRPPLRRGRVSPRLPVPDHIPKPPYVS-----STSLPDLSPEYQIH--D 125
E + T K R PL P PVP +I +P Y S S L QI
Sbjct: 23 EDPYRYTGKLRPHYPL-----MPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLS 77
Query: 126 SESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKS 185
SE I MR C LA VLD A +++P VTT EID AVH I YPSPL Y FPKS
Sbjct: 78 SEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKS 137
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVT 245
CTSVNE +CHGIPD R LQ+GDI+N+D+T+Y NGYHGD ++TF G V DG ++LV+ T
Sbjct: 138 CCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTT 197
Query: 246 EECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYHN-RN 304
ECL + I K G ++++G I +HA+ GF VV + GHG+ K+FH+ P + H +N
Sbjct: 198 YECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKN 257
Query: 305 ENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
+ G M G FTIEP++ G + TWPD WT +T DG +AQFEHT+L+T TG EILT
Sbjct: 258 KAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILT 317
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 274 bits (700), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 142/294 (48%), Positives = 179/294 (60%), Gaps = 13/294 (4%)
Query: 79 TTKFRKRPPLRRGRVSPRLPVPDHIPKPPYVS-----STSLPDLSPEYQIH--DSESIAK 131
T K R PL P PVP +I +P Y S S L QI SE I
Sbjct: 4 TGKLRPHYPL-----MPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEG 58
Query: 132 MRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVN 191
MR C LA VLD A +++P VTT EID AVH I YPSPL Y FPKS CTSVN
Sbjct: 59 MRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVN 118
Query: 192 ECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEK 251
E +CHGIPD R LQ+GDI+N+D+T+Y NGYHGD ++TF G V DG ++LV+ T ECL +
Sbjct: 119 EVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQ 178
Query: 252 GIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYHN-RNENPGCM 310
I K G ++++G I +HA+ GF VV + GHG+ K+FH+ P + H +N+ G M
Sbjct: 179 AIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVM 238
Query: 311 VEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
G FTIEP++ G + TWPD WT +T DG +AQFEHT+L+T TG EILT
Sbjct: 239 KSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILT 292
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 269 bits (687), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 131/295 (44%), Positives = 185/295 (62%), Gaps = 17/295 (5%)
Query: 87 PLRRGRVSPRLPVPDHIPKPPY------VSSTSLPDLSPEYQIHD----------SESIA 130
PLR G+++PR VP HI +P Y VS++ D + ++++ + I
Sbjct: 11 PLRPGKITPRRAVPSHILRPDYADRAGGVSASEEKDRGSKVKVYNIQFLHDDSKKTAEIQ 70
Query: 131 KMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSV 190
+++ C+L+ VLD A +P +TT+E+D+ VH+ +E YPSPL Y GFPKSVCTSV
Sbjct: 71 RIKTVCQLSREVLDIATAAAKPGITTDELDRIVHEATVERNMYPSPLNYYGFPKSVCTSV 130
Query: 191 NECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLE 250
NE +CHGIPDSR+L++GDI+NIDV+ YLNG+HGD ++T G D RLV ECL
Sbjct: 131 NEVICHGIPDSRELEEGDILNIDVSSYLNGFHGDLNETVFIGRPDDDSVRLVHAAYECLC 190
Query: 251 KGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH-NRNENPGC 309
GI V K A +K++G I A +Y VV + GHGVG +FH+ P + H N++ G
Sbjct: 191 AGIGVVKPEALYKQVGDAIEACASQYQCSVVRTYTGHGVGHLFHTSPTVCHYANNKSLGM 250
Query: 310 MVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
M G FTIEP++ +G+ + +TWPD WT+ T DG +AQFEHT+++T G EI T
Sbjct: 251 MRPGHVFTIEPMINLGTWQDVTWPDKWTSTTKDGRRSAQFEHTMVVTNGGVEIFT 305
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 257 bits (656), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 175/282 (62%), Gaps = 2/282 (0%)
Query: 84 KRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQIHDSESIAKMRAACELAARVL 143
R L G +SP PVP+ I +P YV + + S E + E I KMR A +AA L
Sbjct: 6 SRTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGS-EPWVQTPEVIEKMRVAGRIAAGAL 64
Query: 144 DAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQ 203
AGK V P VTT+E+D+ H+ +++ GAYPS LGY GFPKS CTS+NE +CHGIPDS
Sbjct: 65 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 124
Query: 204 LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFK 263
+ DGDI+NIDVT Y+ G HGDT+ TF G+V+D + LV T E + I K G +
Sbjct: 125 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 184
Query: 264 KIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH-NRNENPGCMVEGQTFTIEPIL 322
IG+ I +A ++G+ VV F GHG+G FH+ ++ H ++ M G TFTIEP++
Sbjct: 185 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMI 244
Query: 323 TMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
+G+++ W D WT +T D AQFEHT+L+T TG EILT
Sbjct: 245 NLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 286
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 257 bits (656), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 175/282 (62%), Gaps = 2/282 (0%)
Query: 84 KRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQIHDSESIAKMRAACELAARVL 143
R L G +SP PVP+ I +P YV + + S E + E I KMR A +AA L
Sbjct: 9 SRTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGS-EPWVQTPEVIEKMRVAGRIAAGAL 67
Query: 144 DAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQ 203
AGK V P VTT+E+D+ H+ +++ GAYPS LGY GFPKS CTS+NE +CHGIPDS
Sbjct: 68 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 127
Query: 204 LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFK 263
+ DGDI+NIDVT Y+ G HGDT+ TF G+V+D + LV T E + I K G +
Sbjct: 128 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 187
Query: 264 KIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH-NRNENPGCMVEGQTFTIEPIL 322
IG+ I +A ++G+ VV F GHG+G FH+ ++ H ++ M G TFTIEP++
Sbjct: 188 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMI 247
Query: 323 TMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
+G+++ W D WT +T D AQFEHT+L+T TG EILT
Sbjct: 248 NLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 289
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 257 bits (656), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 175/282 (62%), Gaps = 2/282 (0%)
Query: 84 KRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQIHDSESIAKMRAACELAARVL 143
R L G +SP PVP+ I +P YV + + S E + E I KMR A +AA L
Sbjct: 3 SRTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGS-EPWVQTPEVIEKMRVAGRIAAGAL 61
Query: 144 DAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQ 203
AGK V P VTT+E+D+ H+ +++ GAYPS LGY GFPKS CTS+NE +CHGIPDS
Sbjct: 62 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 121
Query: 204 LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFK 263
+ DGDI+NIDVT Y+ G HGDT+ TF G+V+D + LV T E + I K G +
Sbjct: 122 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 181
Query: 264 KIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH-NRNENPGCMVEGQTFTIEPIL 322
IG+ I +A ++G+ VV F GHG+G FH+ ++ H ++ M G TFTIEP++
Sbjct: 182 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMI 241
Query: 323 TMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
+G+++ W D WT +T D AQFEHT+L+T TG EILT
Sbjct: 242 NLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 283
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 254 bits (648), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 174/282 (61%), Gaps = 2/282 (0%)
Query: 84 KRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQIHDSESIAKMRAACELAARVL 143
R L G +SP PVP+ I +P YV + + S E + E I KMR A +AA L
Sbjct: 9 SRTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGS-EPWVQTPEVIEKMRVAGRIAAGAL 67
Query: 144 DAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQ 203
AGK V P VTT+E+D+ H+ +++ GAYPS LGY GFPKS TS+NE +CHGIPDS
Sbjct: 68 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCSTSLNEVICHGIPDSTV 127
Query: 204 LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFK 263
+ DGDI+NIDVT Y+ G HGDT+ TF G+V+D + LV T E + I K G +
Sbjct: 128 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 187
Query: 264 KIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH-NRNENPGCMVEGQTFTIEPIL 322
IG+ I +A ++G+ VV F GHG+G FH+ ++ H ++ M G TFTIEP++
Sbjct: 188 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMI 247
Query: 323 TMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
+G+++ W D WT +T D AQFEHT+L+T TG EILT
Sbjct: 248 NLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 289
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 253 bits (647), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 133/302 (44%), Positives = 180/302 (59%), Gaps = 11/302 (3%)
Query: 73 ERELQTTTKFRKRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQ------IHDS 126
+ L+ F+ +R +S VP HI +P Y S S+P+ Y+ +++
Sbjct: 48 DDHLKNFVNFKFTGDVRPWPLSKINHVPSHIERPDYAIS-SIPESELIYKRKSDIYVNNE 106
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSV 186
E I ++R AC L + LD A LV P VTT+EID+ VH+ II+ AYPS L Y FPKS
Sbjct: 107 EEIQRIREACILGRKTLDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKFPKSC 166
Query: 187 CTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTE 246
CTSVNE +CHGIPD R L+ GDIINID++V+ G H D ++T+ G+++D K ++ E
Sbjct: 167 CTSVNEIVCHGIPDYRPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKELVE 226
Query: 247 EC---LEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH-N 302
C L + I CK G +K IG I + K F VV + GHGVGK+FHS P + H
Sbjct: 227 TCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSKKNFSVVRSYSGHGVGKLFHSNPTVPHFK 286
Query: 303 RNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEI 362
+N+ G M G FTIEP++ G + WPD WT+ T+DG +AQFEHT+LIT G EI
Sbjct: 287 KNKAVGIMKPGHVFTIEPMINQGHYSDVLWPDQWTSATSDGKLSAQFEHTLLITNNGVEI 346
Query: 363 LT 364
LT
Sbjct: 347 LT 348
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 230 bits (587), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 112/246 (45%), Positives = 161/246 (65%), Gaps = 2/246 (0%)
Query: 122 QIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGG 181
+IH + KMRAA +LAA LD V+P+VTTN ++ H I A P+PL Y G
Sbjct: 7 KIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKG 66
Query: 182 FPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRL 241
FPKS+CTS+N +CHGIP+ + L++GDI+NIDVTV L+G++GDTS+ + G+V+ KRL
Sbjct: 67 FPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRL 126
Query: 242 VKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIY 300
++VT + + KGI V + GA IG I +AEK+ + VV + GHG+G+VFH +P I+
Sbjct: 127 IQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILN 186
Query: 301 HNRNENPGCMVEGQTFTIEPILTMGSIECI-TWPDNWTTLTADGNPAAQFEHTILITRTG 359
+ RN + EG FT+EP++ G+ + I + D WT T D + +AQFEHTI +T+ G
Sbjct: 187 YGRNGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKDG 246
Query: 360 AEILTI 365
EI T+
Sbjct: 247 FEIFTL 252
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 112/246 (45%), Positives = 161/246 (65%), Gaps = 2/246 (0%)
Query: 122 QIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGG 181
+IH + KMRAA +LAA LD V+P+VTTN ++ H I A P+PL Y G
Sbjct: 7 KIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKG 66
Query: 182 FPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRL 241
FPKS+CTS+N +CHGIP+ + L++GDI+NIDVTV L+G++GDTS+ + G+V+ KRL
Sbjct: 67 FPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRL 126
Query: 242 VKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIY 300
++VT + + KGI V + GA IG I +AEK+ + VV + GHG+G+VFH +P I+
Sbjct: 127 IQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILN 186
Query: 301 HNRNENPGCMVEGQTFTIEPILTMGSIECI-TWPDNWTTLTADGNPAAQFEHTILITRTG 359
+ RN + EG FT+EP++ G+ + I + D WT T D + +AQFEHTI +T+ G
Sbjct: 187 YGRNGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKDG 246
Query: 360 AEILTI 365
EI T+
Sbjct: 247 FEIFTL 252
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 210 bits (535), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 8 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 67
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 68 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 127
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 303
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 128 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 187
Query: 304 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 363
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 188 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 247
Query: 364 TI 365
T+
Sbjct: 248 TL 249
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 210 bits (535), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 8 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 67
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 68 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 127
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 303
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 128 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 187
Query: 304 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 363
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 188 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 247
Query: 364 TI 365
T+
Sbjct: 248 TL 249
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 210 bits (535), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 8 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 67
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 68 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 127
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 303
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 128 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 187
Query: 304 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 363
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 188 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 247
Query: 364 TI 365
T+
Sbjct: 248 TL 249
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 210 bits (535), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 9 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 68
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 69 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 128
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 303
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 129 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 188
Query: 304 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 363
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 189 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 248
Query: 364 TI 365
T+
Sbjct: 249 TL 250
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 210 bits (535), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 9 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 68
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 69 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 128
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 303
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 129 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDS 188
Query: 304 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 363
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 189 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 248
Query: 364 TI 365
T+
Sbjct: 249 TL 250
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 210 bits (535), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 8 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 67
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 68 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 127
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 303
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 128 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 187
Query: 304 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 363
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 188 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 247
Query: 364 TI 365
T+
Sbjct: 248 TL 249
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 210 bits (535), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 6 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 65
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 66 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 125
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 303
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 126 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 185
Query: 304 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 363
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 186 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 245
Query: 364 TI 365
T+
Sbjct: 246 TL 247
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 210 bits (535), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 9 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 68
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 69 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 128
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 303
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 129 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDS 188
Query: 304 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 363
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 189 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 248
Query: 364 TI 365
T+
Sbjct: 249 TL 250
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 9 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 68
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 69 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 128
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 303
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 129 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 188
Query: 304 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 363
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 189 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 248
Query: 364 TI 365
T+
Sbjct: 249 TL 250
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 9 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 68
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 69 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 128
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 303
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 129 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDS 188
Query: 304 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 363
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 189 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 248
Query: 364 TI 365
T+
Sbjct: 249 TL 250
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 8 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 67
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 68 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 127
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNR 303
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +++++
Sbjct: 128 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDS 187
Query: 304 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 363
E + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G EIL
Sbjct: 188 RETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEIL 247
Query: 364 TI 365
T+
Sbjct: 248 TL 249
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 133/242 (54%), Gaps = 8/242 (3%)
Query: 132 MRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVN 191
M AA + L A + V+T E+D+ +I EAGA PS LGY GFP S+C+SVN
Sbjct: 43 MAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYHGFPASICSSVN 102
Query: 192 ECMCHGIPDSRQ-LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLE 250
+ + HGIP + L DGD+++ID L+G+HGD++ TF G V + L + T +E
Sbjct: 103 DQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDEALSEATRLSME 162
Query: 251 KGIAVCKDGASFK------KIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYHNRN 304
GIA G ++G R +E FG+V+ + GHG+G+ H +P + +
Sbjct: 163 AGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRAFGIVDGYGGHGIGRSMHLDPFLPNEGA 222
Query: 305 ENPG-CMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 363
G + G IEP+LT+G+ + D+WT +T DG+ AA +EHT+ +T G IL
Sbjct: 223 PGKGPLLAVGSVLAIEPMLTLGTTQTRVLADDWTVVTTDGSRAAHWEHTVAVTEAGPRIL 282
Query: 364 TI 365
T+
Sbjct: 283 TM 284
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 133/245 (54%), Gaps = 2/245 (0%)
Query: 122 QIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGG 181
+I I KM+ A + A L K++ P T +++ V ++ + P+ GYGG
Sbjct: 15 RIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGG 74
Query: 182 FPKSVCTSVNECMCHGIP-DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKR 240
+ + C SVNE + HG+P + ++GDI+++DV G +GD + T++ G + K
Sbjct: 75 YKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKE 134
Query: 241 LVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIY 300
LV+VT E LEK I + K G + I E E GF V+ +VGHGVG+ H +P I
Sbjct: 135 LVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQIP 194
Query: 301 HNRNENPGCMV-EGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTG 359
+ G ++ +G T IEP+++ G + D WT +T DG+ A FEHTILIT G
Sbjct: 195 NYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTILITENG 254
Query: 360 AEILT 364
AEILT
Sbjct: 255 AEILT 259
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 126/237 (53%), Gaps = 1/237 (0%)
Query: 129 IAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCT 188
I M + EL A V ++P +T+ +I+ V I G + +GY G+ + C
Sbjct: 10 IEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYEGYKYATCC 69
Query: 189 SVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEEC 248
S+N+ +CHG P + L+DGD+I +D+ V L G D+ +++ G + + RL++VT++
Sbjct: 70 SINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLMEVTKKA 129
Query: 249 LEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYHNRNENPG 308
L GI + G IG I + E G+GVV FVGHG+G H P+I H G
Sbjct: 130 LYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMIPHYGEAGKG 189
Query: 309 C-MVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
+ EG TIEP++ G+ P+ WT T DG + Q+EH++ IT+ G ILT
Sbjct: 190 LRLKEGMVITIEPMVNTGTWRMKMDPNGWTAYTEDGGLSCQYEHSLAITKEGPRILT 246
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 119/240 (49%), Gaps = 3/240 (1%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
+ E + ++ + A+V + +P +TT E+D ++ E GA +P+ F
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 183 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV 242
P C SVNE + HGIP R +++GD++NIDV+ NGY+ DT +F+ G D +K+ V
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 243 -KVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP--II 299
V E IA K G IGK + A + V++ GHGVG H P ++
Sbjct: 123 CDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVL 182
Query: 300 YHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTG 359
+ ++ + EG IEP ++ + + W T+D + AQ EHT+++T+ G
Sbjct: 183 NYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDG 242
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 20/242 (8%)
Query: 131 KMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSV 190
K+ A E+A +V + A KL RP + E+ +++ +MI+E G P+ FP V S+
Sbjct: 5 KLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLSI 56
Query: 191 NECMCHGIP---DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEE 247
NE H P D+ L++GD + IDV V+++G+ DT+ T G D L++ +E
Sbjct: 57 NEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEED---ELMEAAKE 113
Query: 248 CLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKV-FH---SEPIIYHNR 303
L I+V + G K++GK I K GF + GH + + H S P IY R
Sbjct: 114 ALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIY--R 171
Query: 304 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 363
+ + EG F IEP T+G+ + I P + P + L+ + E
Sbjct: 172 PHDNYVLKEGDVFAIEPFATIGAGQVIEVPPTLIYMYVRDVPVRVAQARFLLAKIKREYG 231
Query: 364 TI 365
T+
Sbjct: 232 TL 233
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 20/242 (8%)
Query: 131 KMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSV 190
K+ A E+A +V + A KL RP + E+ +++ +MI+E G P+ FP V S+
Sbjct: 5 KLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLSI 56
Query: 191 NECMCHGIP---DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEE 247
NE H P D+ L++GD + IDV V+++G+ DT+ T G D L++ +E
Sbjct: 57 NEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEED---ELMEAAKE 113
Query: 248 CLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKV-FH---SEPIIYHNR 303
L I+V + G K++GK I K GF + GH + + H S P IY R
Sbjct: 114 ALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIY--R 171
Query: 304 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 363
+ + EG F IEP T+G+ + I P + P + L+ + E
Sbjct: 172 PHDNYVLKEGDVFAIEPFATIGAGQVIEVPPTLIYMYVRDVPVRVAQARFLLAKIKREYG 231
Query: 364 TI 365
T+
Sbjct: 232 TL 233
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 30/245 (12%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
I E I + ACE+A + + AA + + E+ V ++ GA P F
Sbjct: 124 IKTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGA-EKP----AF 178
Query: 183 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV 242
+ + + HG+ ++++ GD++ ID+ N Y+ D ++T + G+ ++ + +
Sbjct: 179 DTIIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIY 238
Query: 243 KVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGKVFHSEPII 299
++ E ++ + K G + K++ E ++YG+G + F+ GHGVG H P I
Sbjct: 239 EIVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYG--DYFIHSLGHGVGLEIHEWPRI 296
Query: 300 YHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTG 359
+ + EG TIEP + + + + E T+LIT G
Sbjct: 297 SQY---DETVLKEGMVITIEPGIYIPKL-----------------GGVRIEDTVLITENG 336
Query: 360 AEILT 364
A+ LT
Sbjct: 337 AKRLT 341
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 19/225 (8%)
Query: 125 DSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPK 184
DSE I ++ A ++A + +RP V+ E+ + + + GA S F
Sbjct: 133 DSE-IKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSS-----FDI 186
Query: 185 SVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
V + + + HG+ + ++ GD + +D Y GY D ++T G SD LK + +
Sbjct: 187 IVASGLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEIYNI 246
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERF---VGHGVGKVFHSEPIIYH 301
E +G+ K G + ++ ++ + G+G E F GHG+G H P +
Sbjct: 247 VLEAQLRGVNGIKAGLTGREADALTRDYITEKGYG--EYFGHSTGHGIGLEIHEAPGLAF 304
Query: 302 NRNE--NPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGN 344
+ PG V T+EP + + I + D+ +T++GN
Sbjct: 305 RSDTVLEPGMAV-----TVEPGIYIPGIGGVRIEDD-IIVTSEGN 343
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
I + I + ACE+A + + AA + + E+ V ++ GA P F
Sbjct: 127 IKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKVEYLMKMNGA-EKP----AF 181
Query: 183 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV 242
+ + + HG+ ++++ GD++ ID+ Y+ D ++T + G+ ++ K +
Sbjct: 182 DTIIASGYRSALPHGVASDKRIERGDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIY 241
Query: 243 KVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERF---VGHGVGKVFHSEPII 299
++ E +K + K G + K++ +YG+G E F +GHGVG H P +
Sbjct: 242 EIVLEAQKKAVESAKPGITAKELDSIARNIIAEYGYG--EYFNHSLGHGVGLEVHEWPRV 299
Query: 300 YHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTG 359
+ + EG TIEP + + I + E TILIT+ G
Sbjct: 300 SQY---DETVLREGMVITIEPGIYIPKI-----------------GGVRIEDTILITKNG 339
Query: 360 AEILT 364
++ LT
Sbjct: 340 SKRLT 344
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 98/238 (41%), Gaps = 16/238 (6%)
Query: 122 QIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYG- 180
I D E + M A +A +V + +T + I ++ ++ L G
Sbjct: 130 MIKDKEEVKMMEHASRIADKVFEEI-------LTWDLIGMKERELALKIELLIRELSDGI 182
Query: 181 GFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKR 240
F V + N H P R+++ GDII +D GY D ++T G + + L +
Sbjct: 183 AFEPIVASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDERLVK 242
Query: 241 LVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGKVFHSEP 297
+ +V ++ E ++G K + R E K G+G E F+ GHG+G H EP
Sbjct: 243 IYEVVKDAQESAFKAVREGIKAKDVDSRAREVISKAGYG--EYFIHRTGHGLGLDVHEEP 300
Query: 298 IIYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILI 355
I + + G TFTIEP + + + + D+ G + E ++I
Sbjct: 301 YI---GPDGEVILKNGMTFTIEPGIYVPGLGGVRIEDDIVVDEGKGRRLTKAERELII 355
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 101/245 (41%), Gaps = 30/245 (12%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
+ D I K++ A E++ R + +R +T EI + + + GA F
Sbjct: 133 VKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKEGAEGVA-----F 187
Query: 183 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV 242
V + + HG + ++ GD+I ID Y D ++ G SD +K +
Sbjct: 188 DTIVASGCRSALPHGKASDKVVERGDVIVIDFGATYENYCADITRVVSIGEPSDEVKEVH 247
Query: 243 KVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERF---VGHGVGKVFHSEPII 299
+ E E+ + + K G + K + E + G+G E F +GHG+G H P I
Sbjct: 248 SIVLEAQERALKIAKAGVTGKLLDSVAREFIREKGYG--EFFGHSLGHGIGLEVHEGPAI 305
Query: 300 YHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTG 359
RN++P + E FT+EP + + +G + E +++ G
Sbjct: 306 SF-RNDSP--LPENVVFTVEPGIYL-----------------EGKFGIRIEEDVVLKEQG 345
Query: 360 AEILT 364
EILT
Sbjct: 346 CEILT 350
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 27/169 (15%)
Query: 196 HGIPDSRQLQDGDIINIDVT-VYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIA 254
HG D R+LQ GDI+ +D+ Y GY+ D+++T+ G+ S + + + +
Sbjct: 218 HGYSD-RKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVD 276
Query: 255 VCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGKVFHSEPIIYHNRNENPGCMV 311
+ G + ++ + G E FV GHG+G H EP I NE P +V
Sbjct: 277 AVRPGVTAAQVDAAARDVLADAGLA--EYFVHRTGHGIGLCVHEEPYIVAG-NELP--LV 331
Query: 312 EGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGA 360
G F+IEP I +P W A+ E +++T GA
Sbjct: 332 AGMAFSIEP--------GIYFPGRW---------GARIEDIVVVTENGA 363
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 116 DLSPEYQIHD-SESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAG 171
D + Y I D S +A+ +A + A R AA VRP VT ++D A ++ +AG
Sbjct: 246 DSTRTYSIGDPSPDVAQQYSALQRAQR---AAVDAVRPGVTAAQVDAAARDVLADAG 299
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 91/212 (42%), Gaps = 18/212 (8%)
Query: 115 PDLSPEYQIHDSESIAKMRAACELAARVLD--AAGKLVRPSVTTNEIDKAVHQMII-EAG 171
P +S +I D + I + A E+ +V GKL S E+ + MI E G
Sbjct: 142 PVISELREIKDKDEIKAHKKAAEIVDKVFYRFIEGKLEGKS--ERELANRIEYMIKNEFG 199
Query: 172 AYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLC 231
A F V + N H P R+++ GD++ D GY D ++T +
Sbjct: 200 ADDV-----SFEPIVASGPNGANPHHRPSHRKIRKGDVVIFDYGAKYLGYCSDVTRTVVV 254
Query: 232 GNVSDGLKRLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHG 288
G S+ +K++ ++ +E E + +G + + KYG+G E F+ GHG
Sbjct: 255 GPPSEEVKKVYEIVKEAQETAVQKVAEGIPAEVVDATARGIISKYGYG--EYFIHRTGHG 312
Query: 289 VGKVFHSEPIIYHNRNENPGCMVEGQTFTIEP 320
+G H EP I N + +G FTIEP
Sbjct: 313 LGIDVHEEPYISPG---NKKILKDGMVFTIEP 341
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILAYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ H + +++DGD++ I GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENECEMRDGDLVLIAAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ H + +++DGD++ ID GY G ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGAITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDS-RQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVK 243
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + +
Sbjct: 233 VGSGENGCILHYTENECXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYD 292
Query: 244 VTEECLEKGIAVCKDGASFKKI 265
+ E LE + + + G S ++
Sbjct: 293 IVLESLETSLRLYRPGTSILEV 314
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 181 GFPKSVCTSVNECMCHGIP-DSRQ---LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSD 236
FP S+ SVN C+CH P S Q L++GD++ ID+ V+++G+ + + TF+ G V+
Sbjct: 68 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIG-VAQ 124
Query: 237 GLK------RLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVG 290
G + ++K C E + + K G ++ + ++ A + +E + H +
Sbjct: 125 GTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLK 184
Query: 291 K-VFHSEPIIYHN 302
+ V E I N
Sbjct: 185 QHVIDGEKTIIQN 197
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 181 GFPKSVCTSVNECMCHGIP-DSRQ---LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSD 236
FP S+ SVN C+CH P S Q L++GD++ ID+ V+++G+ + + TF+ +V+
Sbjct: 75 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVV-DVAQ 131
Query: 237 GLK------RLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVG 290
G + ++K C E + + K G ++ + ++ A + +E + H +
Sbjct: 132 GTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLK 191
Query: 291 K-VFHSEPIIYHN 302
+ V E I N
Sbjct: 192 QHVIDGEKTIIQN 204
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 181 GFPKSVCTSVNECMCHGIP-DSRQ---LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSD 236
FP S+ SVN C+CH P S Q L++GD++ ID+ V+++G+ + + TF+ +V+
Sbjct: 82 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVV-DVAQ 138
Query: 237 GLK------RLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVG 290
G + ++K C E + + K G ++ + ++ A + +E + H +
Sbjct: 139 GTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLK 198
Query: 291 K-VFHSEPIIYHN 302
+ V E I N
Sbjct: 199 QHVIDGEKTIIQN 211
>pdb|1CHM|A Chain A, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 13/145 (8%)
Query: 188 TSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEE 247
+ +N H +R++ GDI++++ + GY+ +T + SD RL +V E
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 248 CLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERF-VGHGVGKVFHSEPIIYHNRN-- 304
E G+ + K GA I + ++E K+ F GH G + H Y+ R
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSH-----YYGREAG 337
Query: 305 ----ENPGCMVE-GQTFTIEPILTM 324
E+ ++E G ++EP++ +
Sbjct: 338 LELREDIDTVLEPGMVVSMEPMIML 362
>pdb|1CHM|B Chain B, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 13/145 (8%)
Query: 188 TSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEE 247
+ +N H +R++ GDI++++ + GY+ +T + SD RL +V E
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 248 CLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERF-VGHGVGKVFHSEPIIYHNRN-- 304
E G+ + K GA I + ++E K+ F GH G + H Y+ R
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSH-----YYGREAG 337
Query: 305 ----ENPGCMVE-GQTFTIEPILTM 324
E+ ++E G ++EP++ +
Sbjct: 338 LELREDIDTVLEPGMVVSMEPMIML 362
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 49/210 (23%)
Query: 175 SPLGYGGFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGN 233
S + + F + + N + H + Q+Q+GD++ +D+ + Y+ D S TF G
Sbjct: 218 SGIKHHAFNTILASGKNATVLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGT 277
Query: 234 VSDGLKRLVKVTEECLEKGIAVCKDGASFKKIGKR--------------ISEHAE--KYG 277
S K++ + L++ + K G F + + I E E KY
Sbjct: 278 FSSRQKQIYNIVLNALKETTEIIKPGLKFAALNEHAKKVLAEGCKAVGLIQEDEELSKYY 337
Query: 278 FGVVERFVG---HGVGKVFHSEPIIYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPD 334
+ V F+G H VG Y +R + EG TIEP L + E I
Sbjct: 338 YHGVSHFLGLDTHDVG--------TYKDR-----VLEEGXVITIEPGLYIEE-ESI---- 379
Query: 335 NWTTLTADGNPAAQFEHTILITRTGAEILT 364
+ E IL+T+ G E L+
Sbjct: 380 -----------GIRIEDDILVTKDGHENLS 398
>pdb|1KP0|A Chain A, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
pdb|1KP0|B Chain B, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
Length = 402
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 17/173 (9%)
Query: 188 TSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEE 247
+ +N H R + GDI++++ + GY+ +T V D +
Sbjct: 223 SGINTDGAHNPVTXRVVXRGDILSLNCFPMIFGYYTALERTLFLXXVXDASLXIWXKNTA 282
Query: 248 CLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYHNRNENP 307
+G+ + K GA K I SE Y + R+ G G HS ++ H
Sbjct: 283 VHRRGLXLIKPGARCKDIA---SELNXMYRXWDLLRYRTFGYG---HSFGVLXHYYGREA 336
Query: 308 GCMVEGQTFTI-EPILTMGSIECITWPDNWTTLTADGNPAA--QFEHTILITR 357
G + T+ EP + + S+E + + +G P A EH IL+ +
Sbjct: 337 GVELREDIXTVLEPGMVV-SMEPM-------VMXPEGEPGAGGYREHDILVIK 381
>pdb|3FM3|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FM3|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FMQ|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMQ|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMR|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
pdb|3FMR|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
Length = 358
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 310 MVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
+V+G + +LTM + P N DG AQFEHT+ ++ G E+LT
Sbjct: 303 LVKGGSLKSVNLLTMMGLLTPYPPLN----DIDGCKVAQFEHTVYLSEHGKEVLT 353
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,818,207
Number of Sequences: 62578
Number of extensions: 460986
Number of successful extensions: 1320
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1163
Number of HSP's gapped (non-prelim): 61
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)