RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017786
(366 letters)
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 384 bits (990), Expect = e-135
Identities = 128/237 (54%), Positives = 163/237 (68%), Gaps = 1/237 (0%)
Query: 129 IAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCT 188
I MR A + A VLD K ++P VTT E+D+ H+ I E GAYP+PLGY GFPKS+CT
Sbjct: 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICT 60
Query: 189 SVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEEC 248
SVNE +CHGIPD R L+DGDI+NIDV V L+GYHGD+++TF+ G VS+ K+LV+VTEE
Sbjct: 61 SVNEVVCHGIPDDRVLKDGDIVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEA 120
Query: 249 LEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP-IIYHNRNENP 307
L KGI K G IG I ++AEK G+ VV F GHG+G+ FH EP I + R
Sbjct: 121 LYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVVREFGGHGIGRKFHEEPQIPNYGRPGTG 180
Query: 308 GCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
+ G FTIEP++ +G+ E +T PD WT +T DG+ +AQFEHT+LIT G EILT
Sbjct: 181 PKLKPGMVFTIEPMINLGTYEVVTLPDGWTVVTKDGSLSAQFEHTVLITEDGPEILT 237
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 351 bits (904), Expect = e-122
Identities = 125/245 (51%), Positives = 158/245 (64%), Gaps = 3/245 (1%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
I E I KMR A LAA VLD V+P VTT E+D+ + I + GA P+PLGY GF
Sbjct: 5 IKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGYHGF 64
Query: 183 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV 242
PKS+CTSVNE +CHGIP + L++GDI+NIDVTV +GYHGDTS+TF G +S KRL
Sbjct: 65 PKSICTSVNEVVCHGIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLC 124
Query: 243 KVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH- 301
+VT+E L GIA K GA IG I ++AE GF VV + GHG+G+ FH EP I H
Sbjct: 125 EVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVVREYCGHGIGRKFHEEPQIPHY 184
Query: 302 -NRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGA 360
+ P + EG FTIEP++ G E T D WT +T DG+ +AQ+EHT+ +T G
Sbjct: 185 GAPGDGP-VLKEGMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTEDGP 243
Query: 361 EILTI 365
EILT+
Sbjct: 244 EILTL 248
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 346 bits (889), Expect = e-118
Identities = 146/285 (51%), Positives = 190/285 (66%), Gaps = 8/285 (2%)
Query: 87 PLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPE------YQIHDSESIAKMRAACELAA 140
PLR +SPR VPDHIPKP + + P + P +I E I +MR C +A
Sbjct: 96 PLRPYPISPRRVVPDHIPKPDW-ALDGTPKIEPNSDLQHSVEIKTPEQIQRMRETCRIAR 154
Query: 141 RVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPD 200
VLDAA + ++P VTT+EID+ VH+ I AG YPSPL Y FPKS CTSVNE +CHGIPD
Sbjct: 155 EVLDAAARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD 214
Query: 201 SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGA 260
+R+L+DGDI+N+DVTVY G HGD ++TF GNV + ++LVK T ECLEK IA+ K G
Sbjct: 215 ARKLEDGDIVNVDVTVYYKGCHGDLNETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGV 274
Query: 261 SFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH-NRNENPGCMVEGQTFTIE 319
++++G+ I+ HA G VV+ + GHG+G++FH P I H RN+ G M GQ FTIE
Sbjct: 275 RYREVGEVINRHATMSGLSVVKSYCGHGIGELFHCAPNIPHYARNKAVGVMKAGQVFTIE 334
Query: 320 PILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
P++ G WPD WT +TADG +AQFEHT+L+T TG E+LT
Sbjct: 335 PMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLT 379
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 312 bits (802), Expect = e-106
Identities = 115/246 (46%), Positives = 153/246 (62%), Gaps = 4/246 (1%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
I E I KMR A ++AA+ L LV+P VTT E+D+ + I E GAYP+ LGY GF
Sbjct: 5 IKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGF 64
Query: 183 PKSVCTSVNECMCHGIP-DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDG-LKR 240
P C SVNE + HGIP D + L++GDI+ IDV +++GY GDT+ TF+ G VSD KR
Sbjct: 65 PFPTCISVNEVVAHGIPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKR 124
Query: 241 LVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIY 300
L++ T+E L GI K GA IG+ I E+AE GF VV GHG+G+ H EP I
Sbjct: 125 LLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVVRNLTGHGIGRELHEEPSIP 184
Query: 301 HN-RNENPGCMVEGQTFTIEPILTMGSIECITWP-DNWTTLTADGNPAAQFEHTILITRT 358
+ ++ + EG F IEP++ GS E + P D WT +T DG+ +AQFEHT+++T
Sbjct: 185 NYGKDGTGVRLKEGMVFAIEPMINTGSGEVVEGPSDRWTLVTKDGSLSAQFEHTVIVTED 244
Query: 359 GAEILT 364
G EILT
Sbjct: 245 GCEILT 250
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 312 bits (802), Expect = e-106
Identities = 107/247 (43%), Positives = 144/247 (58%), Gaps = 2/247 (0%)
Query: 120 EYQIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGY 179
+I + KMR + A L GK V P +TT E+D+ + + E GA PSP GY
Sbjct: 7 GMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEGY 66
Query: 180 GGFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLK 239
GFP S C SVNE + HGIP R ++DGD++NIDV+ YL+GYHGDT TF G VS+ +
Sbjct: 67 YGFPGSTCISVNEEVAHGIPGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAE 126
Query: 240 RLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPII 299
+L +V EE L GI K G IG+ I + A+K G+ VV GHGVG+ H EP +
Sbjct: 127 KLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVVRDLTGHGVGRSLHEEPSV 186
Query: 300 YHNR-NENPGC-MVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITR 357
+ P + G T +EP L +G+ + T D WT +T D + +AQFEHT+++TR
Sbjct: 187 ILTYTDPLPNRLLRPGMTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVVTR 246
Query: 358 TGAEILT 364
G EILT
Sbjct: 247 DGPEILT 253
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 287 bits (737), Expect = 8e-97
Identities = 116/243 (47%), Positives = 153/243 (62%), Gaps = 1/243 (0%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
+ + I K+R A LAA VL+ + V+P V+T E+D+ I + GA P+ LGY GF
Sbjct: 3 LKSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYYGF 62
Query: 183 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV 242
P SVC SVNE + HGIPD + L+DGDI+NIDV V +GYHGDT+KTFL G +S ++L+
Sbjct: 63 PGSVCISVNEVVIHGIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLL 122
Query: 243 KVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYHN 302
+ TEE L K I K G +IG I ++AE GF VV + GHG+G+ FH EP I +
Sbjct: 123 ECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVVREYCGHGIGRKFHEEPQIPNY 182
Query: 303 -RNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAE 361
+ + EG FTIEP++ G+ E T D WT T DG+ +AQFEHTI+IT G E
Sbjct: 183 GKKFTNVRLKEGMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITDNGPE 242
Query: 362 ILT 364
ILT
Sbjct: 243 ILT 245
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 260 bits (665), Expect = 2e-85
Identities = 121/270 (44%), Positives = 171/270 (63%), Gaps = 6/270 (2%)
Query: 102 HIPKPPYVSSTSLPDL-SPEYQI--HDSESIAKMRAACELAARVLDAAGKLVRPSVTTNE 158
H P P S +L L + +Y I E I K+R AC++ AR+LDA + + VTTNE
Sbjct: 19 HYPTKPERSLENLKQLYASQYDIIIKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNE 78
Query: 159 IDKAVHQMIIEAGAYPSPLGYGG--FPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTV 216
+D+ ++ E A P+PL YG FPK++CTS+NE +CHGIP+ L++GDI+NIDV+
Sbjct: 79 LDELSRELHKEYNAIPAPLNYGSPPFPKTICTSLNEVICHGIPNDIPLKNGDIMNIDVSC 138
Query: 217 YLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKY 276
++GY+GD S+ + G VS+ K++ + + ECL IA+ K G +IG+ I A+KY
Sbjct: 139 IVDGYYGDCSRMVMIGEVSEIKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKY 198
Query: 277 GFGVVERFVGHGVGKVFHSEPIIYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDN- 335
GF VV++FVGHGVG FH P + H+RN + + G FTIEP++ +G E + P N
Sbjct: 199 GFSVVDQFVGHGVGIKFHENPYVPHHRNSSKIPLAPGMIFTIEPMINVGKKEGVIDPINH 258
Query: 336 WTTLTADGNPAAQFEHTILITRTGAEILTI 365
W T D P+AQ+EHTILIT TG EILT+
Sbjct: 259 WEARTCDNQPSAQWEHTILITETGYEILTL 288
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 191 bits (487), Expect = 1e-59
Identities = 67/229 (29%), Positives = 97/229 (42%), Gaps = 24/229 (10%)
Query: 130 AKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTS 189
MR A +AA L+AA +RP VT E+ + + G FP V +
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGGA----RGPAFPPIVASG 56
Query: 190 VNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECL 249
N + H IP R L+DGD++ IDV +GYH D ++TF+ G + + L + E
Sbjct: 57 PNAAVPHYIPSDRVLKDGDLVLIDVGAEYDGYHSDITRTFVVGKPTPEQRELYEAVLEAQ 116
Query: 250 EKGIAVCKDGASFKKIGKRISEHAEKYGFG-VVERFVGHGVGKVFHSE-PIIYHNRNENP 307
E IA K G + + E E+ G+G +GHG+G H E P I N+
Sbjct: 117 EAAIAAVKPGVTGGDVDAAAREVLEEGGYGEYFPHGLGHGIGLDVHDEGPYISRGGNDRV 176
Query: 308 GCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILIT 356
+ G FTIEP + G + E T+L+T
Sbjct: 177 --LEPGMVFTIEPGIY----------------FIPGWGGVRIEDTVLVT 207
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
Length = 248
Score = 176 bits (448), Expect = 2e-53
Identities = 93/243 (38%), Positives = 126/243 (51%), Gaps = 1/243 (0%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
I I M + +L A K+++P +TT EI+ V + + GA GY G+
Sbjct: 4 IKTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGY 63
Query: 183 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV 242
P ++C SVN+ MCH P L +GDI+ ID+ V LNG D++ T+ G VSD ++L+
Sbjct: 64 PYAICASVNDEMCHAFPADVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLL 123
Query: 243 KVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYHN 302
V E L KGI G IG I + GF V F GHG+GK H EP I+H
Sbjct: 124 LVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSVARDFTGHGIGKEIHEEPAIFHF 183
Query: 303 RNENPGC-MVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAE 361
+ G + EG TIEPI+ +G + WT T DG +AQ+EHTI IT+ G
Sbjct: 184 GKQGQGPELQEGMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITKDGPI 243
Query: 362 ILT 364
ILT
Sbjct: 244 ILT 246
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 150 bits (380), Expect = 7e-44
Identities = 63/235 (26%), Positives = 105/235 (44%), Gaps = 31/235 (13%)
Query: 129 IAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCT 188
IA++R A E+A + AA + +RP VT E+ A+ Q + AG YP+
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYPAG--------PTIV 52
Query: 189 SVNE--CMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTE 246
+ H PD R+LQ+GD++ +D+ +GYH D ++TF+ G SD + L +
Sbjct: 53 GSGARTALPHYRPDDRRLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVR 112
Query: 247 ECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVE-RFVGHGVGKVFHSEPIIYHNRNE 305
E E +A + G + +++ E E++G G GHG+G H P++ +
Sbjct: 113 EAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGHGIGLEIHEPPVL---KAG 169
Query: 306 NPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGA 360
+ + G F +EP L + G + E T+L+T G
Sbjct: 170 DDTVLEPGMVFAVEPGLYL-----------------PGGGGVRIEDTVLVTEDGP 207
>gnl|CDD|180918 PRK07281, PRK07281, methionine aminopeptidase; Reviewed.
Length = 286
Score = 131 bits (330), Expect = 1e-35
Identities = 79/269 (29%), Positives = 120/269 (44%), Gaps = 33/269 (12%)
Query: 129 IAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGG----FPK 184
I M A + A + L++P V E+++ V + E P +G G +P
Sbjct: 10 IEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPY 69
Query: 185 SVCTSVNECMCHGIPDSRQLQDGDIINIDVTV------------------------YLNG 220
+ C +N+ + H P L++GD++ +D+ + Y
Sbjct: 70 ATCCGLNDEVAHAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTES 129
Query: 221 YHG---DTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYG 277
Y G D+ + G SD +K L+ VT+E + +GI G IG I E+AE G
Sbjct: 130 YRGGLADSCWAYAVGTPSDEVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQEYAESRG 189
Query: 278 FGVVERFVGHGVGKVFHSEPIIYHNRNENPGCMV-EGQTFTIEPILTMGSIECIT-WPDN 335
+GVV VGHGVG H EP++ + G + EG TIEP++ G+ E T
Sbjct: 190 YGVVRDLVGHGVGPTMHEEPMVPNYGTAGRGLRLREGMVLTIEPMINTGTWEIDTDMKTG 249
Query: 336 WTTLTADGNPAAQFEHTILITRTGAEILT 364
W T DG + Q+EH +IT+ G ILT
Sbjct: 250 WAHKTLDGGLSCQYEHQFVITKDGPVILT 278
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 128 bits (324), Expect = 7e-34
Identities = 70/246 (28%), Positives = 106/246 (43%), Gaps = 29/246 (11%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
I IAK+R A E+A L+AA + +RP +T EI + + + GA F
Sbjct: 154 IKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGA-----EGPSF 208
Query: 183 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV 242
V + N + H P R+L+DGD++ ID+ NGY D ++TF G SD + +
Sbjct: 209 DTIVASGENAALPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIY 268
Query: 243 KVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGKVFHSEPII 299
+ E E IA + G + ++ + EK G+G F+ GHGVG V
Sbjct: 269 EAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYG--LYFLHGTGHGVGFVLDVHEHP 326
Query: 300 YHNRNENPGCMVEGQTFTIEP-ILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRT 358
+ + + G F+IEP I G + E T+L+T
Sbjct: 327 QYLSPGSDTTLEPGMVFSIEPGIYIPGGG------------------GVRIEDTVLVTED 368
Query: 359 GAEILT 364
G E+LT
Sbjct: 369 GFEVLT 374
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 116 bits (294), Expect = 4e-31
Identities = 57/196 (29%), Positives = 96/196 (48%), Gaps = 15/196 (7%)
Query: 129 IAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAY-PSPLGYGGFPKSVC 187
I +R A +A + + + ++P +T E+ + + + GA PS F V
Sbjct: 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEGPS------FDTIVA 54
Query: 188 TSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEE 247
+ N + HG+P R++++GD++ ID +GY D ++T G SD LK + ++ E
Sbjct: 55 SGPNSALPHGVPSDRKIEEGDLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLE 114
Query: 248 CLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGKVFHSEPIIYHNRN 304
+ I K G + K++ K + E+ G+G E F+ GHGVG H P I +
Sbjct: 115 AQQAAIKAVKPGVTAKEVDKAARDVIEEAGYG--EYFIHRTGHGVGLEVHEAPYI-SPGS 171
Query: 305 ENPGCMVEGQTFTIEP 320
++ + EG FTIEP
Sbjct: 172 DDV--LEEGMVFTIEP 185
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 117 bits (297), Expect = 1e-30
Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 15/202 (7%)
Query: 129 IAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCT 188
+ K A ++A++V + A KL++P ++ + V I E GA P+ FP
Sbjct: 2 LEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPA------FP--CNI 53
Query: 189 SVNECMCHGIP---DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVT 245
S+NE H P D R +GD++ +D+ +++GY DT+ T ++ + LV+ +
Sbjct: 54 SINEVAAHYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTV---DLGGKYEDLVEAS 110
Query: 246 EECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGK-VFHSEPIIYHNRN 304
EE LE I V + G S +IG+ I E YGF + GHG+ + H+ P I +
Sbjct: 111 EEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPIRNLTGHGLERYELHAGPSIPNYDE 170
Query: 305 ENPGCMVEGQTFTIEPILTMGS 326
+ EG + IEP T G
Sbjct: 171 GGGVKLEEGDVYAIEPFATDGE 192
Score = 37.1 bits (87), Expect = 0.009
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 341 ADGNPAAQFEHTILITRTGAEILT 364
G +Q EHT+++T G E+ T
Sbjct: 267 VKGGLVSQAEHTVIVTEDGCEVTT 290
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 105 bits (263), Expect = 6e-26
Identities = 59/205 (28%), Positives = 90/205 (43%), Gaps = 15/205 (7%)
Query: 125 DSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPK 184
D E K A ++ ++V A + P V E+ + V I E GA P FP
Sbjct: 1 DIERAEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEP------AFPC 54
Query: 185 SVCTSVNECMCHGIP---DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRL 241
++ S+NEC H P D +DGD++ +D+ +++GY DT+ T ++ D L
Sbjct: 55 NI--SINECAAHFTPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITV---DLGDQYDNL 109
Query: 242 VKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGK-VFHSEPIIY 300
VK ++ L I + G +IGK I E E YG + GH + H I
Sbjct: 110 VKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPISNLTGHSMAPYRLHGGKSIP 169
Query: 301 HNRNENPGCMVEGQTFTIEPILTMG 325
+ + + + EG IEP T G
Sbjct: 170 NVKERDTTKLEEGDVVAIEPFATDG 194
Score = 30.5 bits (69), Expect = 1.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 343 GNPAAQFEHTILITRTGAEILT 364
G AQ+EHTIL+ G E+ T
Sbjct: 273 GGYVAQWEHTILVEEHGKEVTT 294
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 103 bits (258), Expect = 3e-25
Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 15/199 (7%)
Query: 131 KMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSV 190
K R A E+ +V A L++P +T EI + V I E GA P FP ++ S+
Sbjct: 3 KYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGP------AFPVNL--SI 54
Query: 191 NECMCHGIP---DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEE 247
NEC H P D L++GD++ +D +++GY D++ T + L++ +E
Sbjct: 55 NECAAHYTPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFTV---DFDPKYDDLLEAAKE 111
Query: 248 CLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGK-VFHSEPIIYHNRNEN 306
L I +IG+ I E E YGF + GH + + H+ I + +
Sbjct: 112 ALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPIRNLTGHSIERYRLHAGKSIPNVKGGE 171
Query: 307 PGCMVEGQTFTIEPILTMG 325
+ EG + IEP T G
Sbjct: 172 GTRLEEGDVYAIEPFATTG 190
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 64.9 bits (159), Expect = 4e-12
Identities = 64/263 (24%), Positives = 102/263 (38%), Gaps = 48/263 (18%)
Query: 129 IAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCT 188
I MR AC+++A AA K RP ++ E++ GA Y V
Sbjct: 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARL-AYSYI-----VAA 54
Query: 189 SVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKVTEE 247
N + H + + + L+DGD++ ID GY D ++TF + G +D + L +
Sbjct: 55 GSNAAILHYVHNDQPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLA 114
Query: 248 CLEKGIAVCKDGASFKKI----GKRISEHAEKYGF-----------GVVERF----VGHG 288
+ IA CK G S++ I + ++E ++ G G +F +GH
Sbjct: 115 AQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHY 174
Query: 289 VGKVFH--SEPIIYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPA 346
+G H + Y R + G TIEP G I + + D
Sbjct: 175 LGLDVHDVGGYLRYLRRARP---LEPGMVITIEP----G----IYFIPDLL----DVPEY 219
Query: 347 AQF-----EHTILITRTGAEILT 364
+ E +L+T G E LT
Sbjct: 220 FRGGGIRIEDDVLVTEDGPENLT 242
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 57.3 bits (139), Expect = 1e-09
Identities = 57/258 (22%), Positives = 99/258 (38%), Gaps = 57/258 (22%)
Query: 131 KMRAACELAARVLDAAGKLVRPSVTTNEI----DKAVHQMI---------IEAG-AYPSP 176
K + A ++A +VL L P ++ DK + + + +E G A+P
Sbjct: 3 KYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFP-- 60
Query: 177 LGYGGFPKSVCTSVNECMCHGIP----DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCG 232
C SVN C+CH P + L+DGD++ ID+ +++GY + T + G
Sbjct: 61 ---------TCISVNNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVG 111
Query: 233 NVSD-----GLKRLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGH 287
++ ++ LE + + + G I + I + YG VE + H
Sbjct: 112 AEAETPVTGKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVEGVLSH 171
Query: 288 GVGKVFHSEPIIYHNR-NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPA 346
+ +V S + E V+ P+L +G
Sbjct: 172 QLKRVVSSGEG--KAKLVE----CVKHGLLFPYPVLY----------------EKEGEVV 209
Query: 347 AQFEHTILITRTGAEILT 364
AQF+ T+L+T G +LT
Sbjct: 210 AQFKLTVLLTPNGVTVLT 227
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 52.0 bits (125), Expect = 2e-07
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 126 SESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPK 184
E IA +R A E++A A + RP + +++ +H GA YPS +
Sbjct: 176 PEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARYPS------YNT 229
Query: 185 SVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVK 243
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + +
Sbjct: 230 IVGSGENGCILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYD 289
Query: 244 VTEECLEKGIAVCKDGASFKKI 265
+ E LE + + + G S +++
Sbjct: 290 IVLESLETSLRLYRPGTSIREV 311
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 49.2 bits (117), Expect = 2e-06
Identities = 53/255 (20%), Positives = 93/255 (36%), Gaps = 35/255 (13%)
Query: 117 LSPEYQIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSP 176
QI E + K+R AC +A R + + ++ ++ EI + + + GA +
Sbjct: 121 PDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKA- 179
Query: 177 LGYGGFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCG--NV 234
F V + + HG + + G+ + +D GY D ++T L V
Sbjct: 180 ----SFDTIVASGWRGALPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGV 235
Query: 235 SDGLKRLVKVTEECLE---KGIAVCKDGASFKKIGKRISEHAEKYGFGVVERF---VGHG 288
S L V + L+ I+ + G +++ + G+G + F GH
Sbjct: 236 SAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYG--DYFGHNTGHA 293
Query: 289 VGKVFHSEPIIYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQ 348
+G H +P + G T+EP I P G +
Sbjct: 294 IGIEVHEDPRFSPRDTTT---LQPGMLLTVEP--------GIYLP---------GQGGVR 333
Query: 349 FEHTILITRTGAEIL 363
E +L+T GAE+L
Sbjct: 334 IEDVVLVTPQGAEVL 348
>gnl|CDD|238523 cd01090, Creatinase, Creatine amidinohydrolase. E.C.3.5.3.3.
Hydrolyzes creatine to sarcosine and urea.
Length = 228
Score = 46.4 bits (110), Expect = 6e-06
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 32/180 (17%)
Query: 196 HGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAV 255
H +R++Q GDI++++ + GY+ +T VSD ++ + E+G+ +
Sbjct: 69 HNPVTNRKVQRGDILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLEL 128
Query: 256 CKDGASFKKIGKRISEHAEKYGFGVVERF-VGHGVGKVFHSEPIIYHNRN------ENPG 308
K GA K I ++E ++ F GH G + H Y+ R E+
Sbjct: 129 IKPGARCKDIAAELNEMYREHDLLRYRTFGYGHSFGVLSH-----YYGREAGLELREDID 183
Query: 309 CMVE-GQTFTIEPILTMGSIECITWPDNWTTLTADGNPAA--QFEHTIL-ITRTGAEILT 364
++E G ++EP++ + +G P A EH IL I GAE +T
Sbjct: 184 TVLEPGMVVSMEPMIMLP----------------EGQPGAGGYREHDILVINENGAENIT 227
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 47.2 bits (112), Expect = 7e-06
Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 15/213 (7%)
Query: 120 EYQIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA--YPSPL 177
Y + + E + K + A E+A VL + + P +I + I+E A +
Sbjct: 10 AYSLSNPEVVTKYKMAGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEETAKIFKKEK 69
Query: 178 G-YGGFPKSVCTSVNECMCHGIP----DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCG 232
G C SVN C+ H P L++GD++ ID+ +++G+ + TF+ G
Sbjct: 70 EMEKGIAFPTCISVNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVG 129
Query: 233 NVSDG-----LKRLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGH 287
+ ++ E + + K G + ++ + I++ A YG VE + H
Sbjct: 130 VAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKVAHSYGCTPVEGMLSH 189
Query: 288 GVGK-VFHSEPIIYHNRNENPGCMVEGQTFTIE 319
+ + V E +I N + + T E
Sbjct: 190 QLKQHVIDGEKVII--SNPSDSQKKDHDTAEFE 220
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 47.4 bits (113), Expect = 7e-06
Identities = 62/265 (23%), Positives = 90/265 (33%), Gaps = 50/265 (18%)
Query: 95 PRLPVPDHIPKPPY------------VSSTSLPDLSPEYQIHDSESIAKMRAACELAARV 142
P +PV Y S TS + ++ + E +R A E+ +V
Sbjct: 113 PTIPVSKQFKDGEYPVGEIQEYPGENSSRTSSEEKRELEKLSE-EQYQDLRRAAEVHRQV 171
Query: 143 LDAAGKLVRPSVT----TNEIDKAVHQMIIEAGAYPSPLGYG-GFPKSVCTSVNECMCHG 197
A +++P V I+ ++I G L G FP S+N C H
Sbjct: 172 RRYAQSVIKPGVKLIDICERIESKSRELIEADG-----LKCGWAFPTGC--SLNHCAAHY 224
Query: 198 IP---DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIA 254
P D L D+ +D ++NG D + T D L + K + GI
Sbjct: 225 TPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCAFTVAFNPKYDPLLQATK---DATNTGIK 281
Query: 255 VCKDGASFKKIGKRISEHAEKYGFGV---------VERFVGHGVGK-VFH---SEPIIYH 301
IG I E E Y + + GH +G + H S PI+
Sbjct: 282 EAGIDVRLSDIGAAIQEVIESYEVEIKGKTYPIKSIRNLNGHSIGPYIIHGGKSVPIVKG 341
Query: 302 NRNENPGCMVEGQTFTIEPILTMGS 326
N M EG+ F IE T S
Sbjct: 342 GENTR---MEEGELFAIE---TFAS 360
Score = 28.9 bits (65), Expect = 4.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 347 AQFEHTILITRTGAEIL 363
+Q EHTIL+ T E+L
Sbjct: 448 SQMEHTILLRPTCKEVL 464
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 42.4 bits (99), Expect = 2e-04
Identities = 41/195 (21%), Positives = 78/195 (40%), Gaps = 21/195 (10%)
Query: 103 IPKPPYVSSTSLPDLSPEYQIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKA 162
+P +V S+S+ + I I ++R + E+ + A KL+R T+ E+ A
Sbjct: 160 MPNVDFVDSSSI--FNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAA 217
Query: 163 VHQMIIEAGA------YPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTV 216
++ + +G PK + ++ C GD+I D V
Sbjct: 218 YKAAVMSKSETHFSRFHLISVGADFSPKLIPSNTKAC------------SGDLIKFDCGV 265
Query: 217 YLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKY 276
++GY D ++TF+ G + +++ + E +++ G K + E +K
Sbjct: 266 DVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKS 325
Query: 277 GFGVVER-FVGHGVG 290
G R +GHG G
Sbjct: 326 GLPNYNRGHLGHGNG 340
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 42.0 bits (98), Expect = 3e-04
Identities = 41/195 (21%), Positives = 78/195 (40%), Gaps = 21/195 (10%)
Query: 103 IPKPPYVSSTSLPDLSPEYQIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKA 162
+P +V S+S+ + I I ++R + E+ + A KL+R T+ E+ A
Sbjct: 77 MPNVDFVDSSSI--FNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAA 134
Query: 163 VHQMIIEAGA------YPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTV 216
++ + +G PK + ++ C GD+I D V
Sbjct: 135 YKAAVMSKSETHFSRFHLISVGADFSPKLIPSNTKAC------------SGDLIKFDCGV 182
Query: 217 YLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKY 276
++GY D ++TF+ G + +++ + E +++ G K + E +K
Sbjct: 183 DVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKS 242
Query: 277 GFGVVER-FVGHGVG 290
G R +GHG G
Sbjct: 243 GLPNYNRGHLGHGNG 257
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 34.6 bits (79), Expect = 0.080
Identities = 51/238 (21%), Positives = 90/238 (37%), Gaps = 27/238 (11%)
Query: 129 IAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCT 188
I +R + E+ + +A K +R T E+ A ++ ++P F +
Sbjct: 183 IEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVM---SFPET----NFSRFNLI 235
Query: 189 SVNECMCHGI-PDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEE 247
SV + I D+ + GD+I D + + GY D ++TF+ G +++
Sbjct: 236 SVGDNFSPKIIADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRT 295
Query: 248 CLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVER-FVGHGVGKVFHSEPIIYHNRNEN 306
E +++ G K + + G R +GHG G ++ E
Sbjct: 296 GHEHMLSMVAPGVKLKAVFDSTMAVIKTSGLPHYNRGHLGHGDG--------VFLGLEEV 347
Query: 307 PGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
P + T T P + + S+E T G + E ILIT +G E L+
Sbjct: 348 PFVSTQA-TETFCPGMVL-SLE--------TPYYGIGVGSIMLEDMILITDSGFEFLS 395
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 34.2 bits (79), Expect = 0.086
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 27/101 (26%)
Query: 109 VSSTSLPDLSPEY------QIHDSESIAK------------MRAACELAARVLDAAGKLV 150
VS SL D++ E +I IA+ + AA L + L G+L+
Sbjct: 243 VSIKSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELM 302
Query: 151 RPS---------VTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
S VT E+D V + GAY + + GF
Sbjct: 303 NESHESLRDDYEVTCPELDTLVEIALAAGGAYGARMTGAGF 343
>gnl|CDD|211774 TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members
of this family are putative peptidases or hydrolases
similar to Xaa-Pro aminopeptidase (pfam00557). They
belong to ectoine utilization operons, as found in
Sinorhizobium meliloti 1021 (where it is known to be
induced by ectoine), Mesorhizobium loti, Silicibacter
pomeroyi, Agrobacterium tumefaciens, and Pseudomonas
putida. The exact function is unknown.
Length = 391
Score = 34.1 bits (78), Expect = 0.096
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 38/272 (13%)
Query: 102 HIPKPPYVSSTSLPDLSPEYQIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDK 161
H+P +V +T L ++ + + IA MR A + + + + P + ++
Sbjct: 139 HLPNARFVDATGL--VNWQRAVKSPTEIAYMRIAARIVENMHQRIFERIEPGMRKCDLVA 196
Query: 162 AVHQMIIEAGAYPSPLGYGG-FPKSVC---TSVNECMCHGIPDSRQLQDGDIINIDVTVY 217
++ I G+GG +P V + + H D ++ G+ ++
Sbjct: 197 EIYDAGIRGAD-----GFGGDYPAIVPLLPSGADASAPHLTWDDSPMKKGEGTFFEIAGC 251
Query: 218 LNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYG 277
YH S+T G + K E +E G+A K G + + I + +KYG
Sbjct: 252 YKRYHCPLSRTVFLGKPTQAFLDAEKAVLEGMEAGLAAAKPGNTCEDIANAFFKVLKKYG 311
Query: 278 FGVVERFVGHGVGKVFHSEPIIYHNRNEN--PG---CMVEGQTFTIEPILTMGSIECITW 332
R G+ +G S P + R + PG + G TF L W
Sbjct: 312 IHKDSR-TGYPIGL---SYPPDWGERTMSLRPGDNTVLQPGMTFHFMTGL---------W 358
Query: 333 PDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
++W + +ILIT TG E L+
Sbjct: 359 MEDW---------GLEITESILITETGVECLS 381
>gnl|CDD|221838 pfam12896, Apc4, Anaphase-promoting complex, cyclosome, subunit 4.
Apc4 is one of the larger of the subunits of the
anaphase-promoting complex or cyclosome. This family
represents the long domain downstream of the WD40
repeat/s that are present on the Apc4 subunits. The
anaphase-promoting complex is a multiprotein subunit E3
ubiquitin ligase complex that controls segregation of
chromosomes and exit from mitosis in eukaryotes. Results
in C.elegans show that the primary essential role of the
spindle assembly checkpoint is not in the chromosome
segregation process itself but rather in delaying
anaphase onset until all chromosomes are properly
attached to the spindle. the APC/C is likely to be
required for all metaphase-to-anaphase transitions in a
multicellular organism.
Length = 208
Score = 33.0 bits (76), Expect = 0.13
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 206 DGDIINIDVTVYLNGYHGDTSKTFLCGNVSD-GLKRLVKVTEECLEKGIAVC 256
GD++ + L G K FL + + GLKR K E +
Sbjct: 70 GGDLVAELYDLLLTGIISPALKDFLLNQLGERGLKRWEKSVTSAYESLRKLV 121
>gnl|CDD|224074 COG1152, CdhA, CO dehydrogenase/acetyl-CoA synthase alpha subunit
[Energy production and conversion].
Length = 772
Score = 30.6 bits (69), Expect = 1.4
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 231 CGNVSDGLKRLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVG 286
C N G K + K+ EE L++ V G IG + ++ G + E++ G
Sbjct: 508 CPNYPAGTKDVYKIAEEFLKRNYIVVTTGCIAMDIG----MYKDEDGKTLYEKYPG 559
>gnl|CDD|178725 PLN03183, PLN03183, acetylglucosaminyltransferase family protein;
Provisional.
Length = 421
Score = 29.8 bits (67), Expect = 2.5
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 19/80 (23%)
Query: 77 QTTTKFRKRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSP-------------EYQI 123
QT +F + + + PV D +P+ Y+ S S DL +Y +
Sbjct: 54 QTRLEFAES---KVNQSPHPPPVQDKLPRFAYLVSGSKGDLEKLWRTLRALYHPRNQYVV 110
Query: 124 H-DSESIAKMRAACELAARV 142
H D ES A+ R ELA+RV
Sbjct: 111 HLDLESPAEERL--ELASRV 128
>gnl|CDD|215224 PLN02400, PLN02400, cellulose synthase.
Length = 1085
Score = 29.6 bits (66), Expect = 3.0
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 42 SSTGRQARCPNKLVVHAKRISGLEEAMRIRRERELQTTTKFRKRPPLRRGRVS----PRL 97
SS+ R P L+ H + +SG E + + TT P R S PR
Sbjct: 134 SSSSRHESQPIPLLTHGQPVSG--EIPCATPDNQSVRTTSGPLGPAERNANSSPYIDPRQ 191
Query: 98 PVPDHIPKP 106
PVP I P
Sbjct: 192 PVPVRIVDP 200
>gnl|CDD|200464 cd11325, AmyAc_GTHase, Alpha amylase catalytic domain found in
Glycosyltrehalose trehalohydrolase (also called
Maltooligosyl trehalose Trehalohydrolase).
Glycosyltrehalose trehalohydrolase (GTHase) was
discovered as part of a coupled system for the
production of trehalose from soluble starch. In the
first half of the reaction, glycosyltrehalose synthase
(GTSase), an intramolecular glycosyl transferase,
converts the glycosidic bond between the last two
glucose residues of amylose from an alpha-1,4 bond to an
alpha-1,1 bond, making a non-reducing glycosyl
trehaloside. In the second half of the reaction, GTHase
cleaves the alpha-1,4 glycosidic bond adjacent to the
trehalose moiety to release trehalose and
malto-oligosaccharide. Like isoamylase and other
glycosidases that recognize branched oligosaccharides,
GTHase contains an N-terminal extension and does not
have the conserved calcium ion present in other alpha
amylase family enzymes. The Alpha-amylase family
comprises the largest family of glycoside hydrolases
(GH), with the majority of enzymes acting on starch,
glycogen, and related oligo- and polysaccharides. These
proteins catalyze the transformation of alpha-1,4 and
alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A; C
is the C-terminal extension characterized by a Greek
key. The majority of the enzymes have an active site
cleft found between domains A and B where a triad of
catalytic residues (Asp, Glu and Asp) performs
catalysis. Other members of this family have lost the
catalytic activity as in the case of the human 4F2hc, or
only have 2 residues that serve as the catalytic
nucleophile and the acid/base, such as Thermus A4
beta-galactosidase with 2 Glu residues (GH42) and human
alpha-galactosidase with 2 Asp residues (GH31). The
family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Glycosyltrehalose Trehalohydrolase
Maltooligosyltrehalose Trehalohydrolase.
Length = 436
Score = 29.4 bits (67), Expect = 3.5
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 236 DGLKRLVKVTEECLEKGIAVCKD 258
D LKRLV +G+AV D
Sbjct: 104 DDLKRLVD---AAHRRGLAVILD 123
>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
Length = 547
Score = 29.1 bits (66), Expect = 4.5
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 279 GVVERFVGHGV----GKVFHSEPIIYH 301
G ER V GV GKVF + +Y
Sbjct: 79 GCGERMVDKGVSWNVGKVFLRDEEVYR 105
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 28.9 bits (65), Expect = 4.5
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 124 HDSESIAKMRAACELAARVLDAAG 147
++ ++AK+RA E+ + L A+
Sbjct: 256 TNARALAKLRAESEITKKTLSAST 279
>gnl|CDD|217789 pfam03915, AIP3, Actin interacting protein 3.
Length = 424
Score = 28.5 bits (64), Expect = 5.7
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 57 HAKRISGLEEAMRIR-RERELQTTTKFRK 84
H R+ +E A ++R +EREL+ +F K
Sbjct: 367 HESRLEAIERAEKLRQKERELRRVDEFEK 395
>gnl|CDD|151063 pfam10504, DUF2452, Protein of unknown function (DUF2452). This
protein is found in eukaryotes but its function is
unknown.
Length = 160
Score = 27.8 bits (62), Expect = 5.9
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 48 ARCPNKLVVHAKRISGL-EEAMRI----RREREL-QTTTKFRKRP 86
NKL V A++I L E+A ++ +R+ +L F K+P
Sbjct: 48 NNACNKLTVIAEQIRALQEQARKVLEEAQRDADLHHAACNFVKKP 92
>gnl|CDD|226143 COG3616, COG3616, Predicted amino acid aldolase or racemase [Amino
acid transport and metabolism].
Length = 368
Score = 28.5 bits (64), Expect = 6.2
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 128 SIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA 172
+ ++ + D G +RP V T++ + + ++AGA
Sbjct: 24 DLDRLDGNIDRMQARADDHGVRLRPHVKTHKCPELAR-IQLDAGA 67
>gnl|CDD|239929 cd04483, hOBFC1_like, hOBFC1_like: A subfamily of OB folds similar
to that found in human OB fold containing protein 1
(hOBFC1). Members of this group belong to the
Replication protein A subunit 2 (RPA2) family of OB
folds. RPA is a nuclear ssDNA binding protein (SSB)
which appears to be involved in all aspects of DNA
metabolism including replication, recombination, and
repair. RPA also mediates specific interactions of
various nuclear proteins. In animals, plants, and fungi,
RPA is a heterotrimer with subunits of 70KDa (RPA1),
32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of
RPA2 has dual roles in ssDNA binding and trimerization.
Length = 92
Score = 27.0 bits (60), Expect = 6.2
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 325 GSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILTI 365
G + C+ W + + + AA+ + L+ A++L I
Sbjct: 25 GVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEI 65
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 28.5 bits (64), Expect = 6.7
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 23/78 (29%)
Query: 300 YHNRNENPGCMVEGQTFTIEPILTMGSIECITWPD-----------------NWTTLTAD 342
Y NR + P +++G TFT+ P G + + P + D
Sbjct: 488 YPNRPDVP--VLKGLTFTLHP----GEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD 541
Query: 343 GNPAAQFEHTILITRTGA 360
G P Q++H L +
Sbjct: 542 GVPLVQYDHHYLHRQVAL 559
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 28.5 bits (63), Expect = 7.6
Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 10/116 (8%)
Query: 10 GHGSSSFLHGSAKPKLNSASALFTGAPLSLSPSSTGRQA-----RCPNKLVVHAKRISGL 64
G G + S G P G++ P+K+ +K+
Sbjct: 525 GDKEGE--EGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFP 582
Query: 65 EEAMRIRRERELQTTTKFRK-RPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSP 119
++ + E + + R + P R SP+LP IPK P + P
Sbjct: 583 KDPKHPKDPEEPKKPKRPRSAQRPTRPK--SPKLPELLDIPKSPKRPESPKSPKRP 636
Score = 28.1 bits (62), Expect = 8.6
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 64 LEEAMRIRRERELQTTTKFRKRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEY-- 121
L E + I + + + K KRPP + SP P I K P + P P++
Sbjct: 614 LPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKE 673
Query: 122 QIHDSESIAKMRAACELAARVLDAA 146
+ +D A ++ VLD +
Sbjct: 674 KFYDDYLDAAAKSKETKTTVVLDES 698
>gnl|CDD|239649 cd03677, MM_CoA_mutase_beta, Coenzyme B12-dependent-methylmalonyl
coenzyme A (CoA) mutase (MCM) family, Beta subunit-like
subfamily; contains bacterial proteins similar to the
beta subunit of MCMs from Propionbacterium shermanni and
Streptomyces cinnamonensis, which are alpha/beta
heterodimers. For P. shermanni MCM, it is known that
only the alpha subunit binds coenzyme B12 and
substrates. The role of the beta subunit is unclear. MCM
catalyzes the isomerization of methylmalonyl-CoA to
succinyl-CoA. The reaction proceeds via radical
intermediates beginning with a substrate-induced
homolytic cleavage of the Co-C bond of coenzyme B12 to
produce cob(II)alamin and the deoxyadenosyl radical. MCM
plays an important role in the conversion of
propionyl-CoA to succinyl-CoA during the degradation of
propionate for the Krebs cycle. Methylobacterium
extorquens MCM participates in the glyoxylate
regeneration pathway. In M. extorquens, MCM forms a
complex with MeaB; MeaB may protect MCM from
irreversible inactivation. In some bacteria, MCM is
involved in the reverse metabolic reaction, the
rearrangement of succinyl-CoA to methylmalonyl-CoA.
Examples include P. shermanni MCM during propionic acid
fermentation and Streptomyces MCM in polyketide
biosynthesis.
Length = 424
Score = 28.3 bits (64), Expect = 7.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 129 IAKMRAACELAARVLDAAG 147
IAK+RA L AR+ +A G
Sbjct: 243 IAKLRALRLLWARIAEAYG 261
>gnl|CDD|193540 cd05664, M20_Acy1_like6, M20 Peptidase Aminoacylase 1 subfamily.
Peptidase M20 family, Uncharacterized subfamily of
proteins predicted as putative amidohydrolases or
hippurate hydrolases. These are a class of zinc binding
homodimeric enzymes involved in the hydrolysis of
N-acetylated proteins. N-terminal acetylation of
proteins is a widespread and highly conserved process
that is involved in the protection and stability of
proteins. Several types of aminoacylases can be
distinguished on the basis of substrate specificity.
Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic
N-acyl-alpha-amino acids (except L-aspartate),
especially N-acetyl-methionine and acetyl-glutamate into
L-amino acids and an acyl group. However, ACY1 can also
catalyze the reverse reaction, the synthesis of
acetylated amino acids. ACY1 may also play a role in
xenobiotic bioactivation as well as in the inter-organ
processing of amino acid-conjugated xenobiotic
derivatives (S-substituted-N-acetyl-L-cysteine).
Length = 398
Score = 27.9 bits (63), Expect = 8.5
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 267 KRISEHAEKYGFGVVERFVGHGVGKVFH 294
RI+E GF V G GV V
Sbjct: 25 ARIAEELRALGFEVTTGVGGTGVVGVLR 52
>gnl|CDD|236988 PRK11805, PRK11805, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 307
Score = 27.8 bits (63), Expect = 8.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 106 PPYVSSTSLPDLSPEYQ 122
PPYV + + DL EY+
Sbjct: 209 PPYVDAEDMADLPAEYR 225
>gnl|CDD|193607 cd09633, Deltex_C, Domain found at the C-terminus of deltex-like.
The deltex family of proteins is involved in the
regulation of Notch signaling, and therefore may play
roles in cell-to-cell communications that regulate
mechanisms determining cell fate. They have a central
RING-type zinc finger domain and contain a C-terminal
domain, described here, that is also found in other
domain architectures. Deltex-1 (DTX1) contains a RING
finger and two WWE domains, indicating that it may be an
E3 ubiquitin ligase. Human deltex 3-like, which contains
an additional N-terminal domain (presumably with
ubiquitin ligase activity) is also described as E3
ubiquitin-protein ligase DTX3L, B-lymphoma- and
BAL-associated protein (BBAP), or rhysin-2. DTX3L
mediates monoubiquitination of K91 of histone H4 in
response to DNA damage.
Length = 131
Score = 26.8 bits (60), Expect = 9.6
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 313 GQTFTIEPILTMGSIECITW 332
FT+ +T G + + W
Sbjct: 77 RLIFTVGTSVTTGREDVVVW 96
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.405
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,741,220
Number of extensions: 1824584
Number of successful extensions: 1867
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1803
Number of HSP's successfully gapped: 58
Length of query: 366
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 268
Effective length of database: 6,590,910
Effective search space: 1766363880
Effective search space used: 1766363880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)