RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017786
(366 letters)
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex;
HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB:
3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A*
1y1n_A 1yj3_A
Length = 285
Score = 477 bits (1230), Expect = e-171
Identities = 129/282 (45%), Positives = 172/282 (60%), Gaps = 2/282 (0%)
Query: 84 KRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQIHDSESIAKMRAACELAARVL 143
R L G +SP PVP+ I +P YV E + E I KMR A +AA L
Sbjct: 3 SRTALSPGVLSPTRPVPNWIARPEYVG-KPAAQEGSEPWVQTPEVIEKMRVAGRIAAGAL 61
Query: 144 DAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQ 203
AGK V P VTT+E+D+ H+ +++ GAYPS LGY GFPKS CTS+NE +CHGIPDS
Sbjct: 62 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 121
Query: 204 LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFK 263
+ DGDI+NIDVT Y+ G HGDT+ TF G+V+D + LV T E + I K G +
Sbjct: 122 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 181
Query: 264 KIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH-NRNENPGCMVEGQTFTIEPIL 322
IG+ I +A ++G+ VV F GHG+G FH+ ++ H ++ M G TFTIEP++
Sbjct: 182 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMI 241
Query: 323 TMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
+G+++ W D WT +T D AQFEHT+L+T TG EILT
Sbjct: 242 NLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 283
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold,
structur genomics, structural genomics consortium, SGC,
hydrolase; 1.95A {Plasmodium falciparum}
Length = 368
Score = 475 bits (1225), Expect = e-169
Identities = 129/293 (44%), Positives = 172/293 (58%), Gaps = 9/293 (3%)
Query: 81 KFRKRPPLRRGRVSPRLPVPDHIPKPPYV-----SSTSLPDLSPEYQIHDSESIAKMRAA 135
F+ +R +S VP HI +P Y S + + +++ E I ++R A
Sbjct: 56 NFKFTGDVRPWPLSKINHVPSHIERPDYAISSIPESELIYKRKSDIYVNNEEEIQRIREA 115
Query: 136 CELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNECMC 195
C L + LD A LV P VTT+EID+ VH+ II+ AYPS L Y FPKS CTSVNE +C
Sbjct: 116 CILGRKTLDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKFPKSCCTSVNEIVC 175
Query: 196 HGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGL---KRLVKVTEECLEKG 252
HGIPD R L+ GDIINID++V+ G H D ++T+ G+++D K LV+ L +
Sbjct: 176 HGIPDYRPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKELVETCYFSLMEA 235
Query: 253 IAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH-NRNENPGCMV 311
I CK G +K IG I + K F VV + GHGVGK+FHS P + H +N+ G M
Sbjct: 236 IKKCKPGMFYKNIGTLIDAYVSKKNFSVVRSYSGHGVGKLFHSNPTVPHFKKNKAVGIMK 295
Query: 312 EGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
G FTIEP++ G + WPD WT+ T+DG +AQFEHT+LIT G EILT
Sbjct: 296 PGHVFTIEPMINQGHYSDVLWPDQWTSATSDGKLSAQFEHTLLITNNGVEILT 348
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab;
HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A
2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Length = 329
Score = 460 bits (1187), Expect = e-164
Identities = 136/292 (46%), Positives = 178/292 (60%), Gaps = 9/292 (3%)
Query: 82 FRKRPPLRRGR-VSPRLPVPDHIPKPPYVSSTSLPDLSPEY-------QIHDSESIAKMR 133
+R LR + P PVP +I +P Y S + ++ SE I MR
Sbjct: 26 YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR 85
Query: 134 AACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNEC 193
C LA VLD A +++P VTT EID AVH I YPSPL Y FPKS CTSVNE
Sbjct: 86 LVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEV 145
Query: 194 MCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGI 253
+CHGIPD R LQ+GDI+N+D+T+Y NGYHGD ++TF G V DG ++LV+ T ECL + I
Sbjct: 146 ICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAI 205
Query: 254 AVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH-NRNENPGCMVE 312
K G ++++G I +HA+ GF VV + GHG+ K+FH+ P + H +N+ G M
Sbjct: 206 DAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKS 265
Query: 313 GQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
G FTIEP++ G + TWPD WT +T DG +AQFEHT+L+T TG EILT
Sbjct: 266 GHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILT 317
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
infectious disease, S aminopeptidase, protease,
epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
3mr1_A
Length = 262
Score = 380 bits (979), Expect = e-133
Identities = 111/245 (45%), Positives = 157/245 (64%), Gaps = 2/245 (0%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
IH + KMRAA +LAA LD V+P+VTTN ++ H I A P+PL Y GF
Sbjct: 8 IHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKGF 67
Query: 183 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV 242
PKS+CTS+N +CHGIP+ + L++GDI+NIDVTV L+G++GDTS+ + G+V+ KRL+
Sbjct: 68 PKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRLI 127
Query: 243 KVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYHN 302
+VT + + KGI V + GA IG I +AEK+ + VV + GHG+G+VFH +P I +
Sbjct: 128 QVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILNY 187
Query: 303 RNENPGC-MVEGQTFTIEPILTMGSIECITW-PDNWTTLTADGNPAAQFEHTILITRTGA 360
G + EG FT+EP++ G+ + I D WT T D + +AQFEHTI +T+ G
Sbjct: 188 GRNGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKDGF 247
Query: 361 EILTI 365
EI T+
Sbjct: 248 EIFTL 252
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
3mat_A* 1yvm_A* 2mat_A ...
Length = 263
Score = 368 bits (948), Expect = e-129
Identities = 110/246 (44%), Positives = 153/246 (62%), Gaps = 3/246 (1%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGG 181
I E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G
Sbjct: 4 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 63
Query: 182 FPKSVCTSVNECMCHGIP-DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKR 240
+PKSVC S+NE +CHGIP D++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +R
Sbjct: 64 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 123
Query: 241 LVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIY 300
L ++T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +
Sbjct: 124 LCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVL 183
Query: 301 HNRNENPGC-MVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTG 359
H + + G TFTIEP++ G E T D WT T D + +AQ+EHTI++T G
Sbjct: 184 HYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNG 243
Query: 360 AEILTI 365
EILT+
Sbjct: 244 CEILTL 249
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 359 bits (923), Expect = e-125
Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 3/245 (1%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
+ E + ++ + A+V + +P +TT E+D ++ E GA +P+ F
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 183 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGL-KRL 241
P C SVNE + HGIP R +++GD++NIDV+ NGY+ DT +F+ G D + +++
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 242 VKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPI-IY 300
V E IA K G IGK + A + V++ GHGVG H P +
Sbjct: 123 CDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVL 182
Query: 301 HNRNENPGC-MVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTG 359
+ + + EG IEP ++ + + W T+D + AQ EHT+++T+ G
Sbjct: 183 NYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDG 242
Query: 360 AEILT 364
+ T
Sbjct: 243 PILTT 247
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 344 bits (885), Expect = e-119
Identities = 82/243 (33%), Positives = 127/243 (52%), Gaps = 1/243 (0%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
+ I M + EL A V ++P +T+ +I+ V I G + +GY G+
Sbjct: 4 LKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYEGY 63
Query: 183 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV 242
+ C S+N+ +CHG P + L+DGD+I +D+ V L G D+ +++ G + + RL+
Sbjct: 64 KYATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLM 123
Query: 243 KVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYHN 302
+VT++ L GI + G IG I + E G+GVV FVGHG+G H P+I H
Sbjct: 124 EVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMIPHY 183
Query: 303 RNENPGC-MVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAE 361
G + EG TIEP++ G+ P+ WT T DG + Q+EH++ IT+ G
Sbjct: 184 GEAGKGLRLKEGMVITIEPMVNTGTWRMKMDPNGWTAYTEDGGLSCQYEHSLAITKEGPR 243
Query: 362 ILT 364
ILT
Sbjct: 244 ILT 246
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 342 bits (880), Expect = e-118
Identities = 89/244 (36%), Positives = 131/244 (53%), Gaps = 2/244 (0%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
I I KM+ A + A L K++ P T +++ V ++ + P+ GYGG+
Sbjct: 16 IKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGY 75
Query: 183 PKSVCTSVNECMCHGIP-DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRL 241
+ C SVNE + HG+P + ++GDI+++DV G +GD + T++ G + K L
Sbjct: 76 KYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKEL 135
Query: 242 VKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
V+VT E LEK I + K G + I E E GF V+ +VGHGVG+ H +P I +
Sbjct: 136 VRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQIPN 195
Query: 302 NRNENPGCM-VEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGA 360
G + +G T IEP+++ G + D WT +T DG+ A FEHTILIT GA
Sbjct: 196 YGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTILITENGA 255
Query: 361 EILT 364
EILT
Sbjct: 256 EILT 259
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 331 bits (852), Expect = e-114
Identities = 87/251 (34%), Positives = 130/251 (51%), Gaps = 8/251 (3%)
Query: 122 QIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGG 181
+ + M AA + L A + V+T E+D+ +I EAGA PS LGY G
Sbjct: 33 EQRTPGELDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYHG 92
Query: 182 FPKSVCTSVNECMCHGIP-DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKR 240
FP S+C+SVN+ + HGIP + L DGD+++ID L+G+HGD++ TF G V +
Sbjct: 93 FPASICSSVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDEA 152
Query: 241 LVKVTEECLEKGIAVCKDGASFKKIGKRISEHAE------KYGFGVVERFVGHGVGKVFH 294
L + T +E GIA G + I FG+V+ + GHG+G+ H
Sbjct: 153 LSEATRLSMEAGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRAFGIVDGYGGHGIGRSMH 212
Query: 295 SEPIIYHNRNENPGC-MVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTI 353
+P + + G + G IEP+LT+G+ + D+WT +T DG+ AA +EHT+
Sbjct: 213 LDPFLPNEGAPGKGPLLAVGSVLAIEPMLTLGTTQTRVLADDWTVVTTDGSRAAHWEHTV 272
Query: 354 LITRTGAEILT 364
+T G ILT
Sbjct: 273 AVTEAGPRILT 283
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 216 bits (553), Expect = 2e-67
Identities = 43/259 (16%), Positives = 92/259 (35%), Gaps = 19/259 (7%)
Query: 112 TSLPDLSPEYQIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAG 171
S D E I + + K + ++A RVL + + V+ + + MI+E
Sbjct: 8 HSGEDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEET 67
Query: 172 A---YPSPLGYGGFPKSVCTSVNECMCHGIP----DSRQLQDGDIINIDVTVYLNGYHGD 224
G SVN C+CH P L++GD++ ID+ V+++G+ +
Sbjct: 68 GKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIAN 127
Query: 225 TSKTFLCGNVSDGL-----KRLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFG 279
+ TF+ ++K C E + + K G ++ + ++ A +
Sbjct: 128 VAHTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCT 187
Query: 280 VVERFVGHGV-------GKVFHSEPIIYHNRNENPGCMVEGQTFTIEPILTMGSIECITW 332
+E + H + K P ++ + + ++ +++ G +
Sbjct: 188 PIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDA 247
Query: 333 PDNWTTLTADGNPAAQFEH 351
T D + +
Sbjct: 248 GQRTTIYKRDPSKQYGLKM 266
Score = 38.6 bits (90), Expect = 0.002
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 342 DGNPAAQFEHTILITRTGAEILT 364
+G AQF+ T+L+ G +T
Sbjct: 319 EGEFVAQFKFTVLLMPNGPMRIT 341
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 213 bits (544), Expect = 3e-67
Identities = 66/222 (29%), Positives = 105/222 (47%), Gaps = 16/222 (7%)
Query: 129 IAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCT 188
K+ A E+A +V + A KL RP + E+ +++ +MI+E G P FP V
Sbjct: 3 TEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKP------AFP--VNL 54
Query: 189 SVNECMCHGIP---DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVT 245
S+NE H P D+ L++GD + IDV V+++G+ DT+ T G D L++
Sbjct: 55 SINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEED---ELMEAA 111
Query: 246 EECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGK-VFHSEPIIYHNRN 304
+E L I+V + G K++GK I K GF + GH + + H+ I +
Sbjct: 112 KEALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIYR 171
Query: 305 ENPGC-MVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNP 345
+ + EG F IEP T+G+ + I P + P
Sbjct: 172 PHDNYVLKEGDVFAIEPFATIGAGQVIEVPPTLIYMYVRDVP 213
Score = 40.3 bits (95), Expect = 5e-04
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 340 TADGNPAAQFEHTILITRTGAEILT 364
AQFEHTI++ + + T
Sbjct: 270 EIRNGIVAQFEHTIIVEKDSVIVTT 294
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 176 bits (449), Expect = 2e-52
Identities = 52/278 (18%), Positives = 85/278 (30%), Gaps = 32/278 (11%)
Query: 95 PRLPVPDHIPKPPYVSSTSLPDLSPE-YQIHDSESIAKMRAACELAARVLDAAGKLVRPS 153
LP+ Y + E +S+ + R A E R +VRP
Sbjct: 12 EELPIEFLPKDGVYGKGKLFDSRNMEIENFTESDILQDARRAAEAHRRARYRVQSIVRPG 71
Query: 154 VTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIP----DSRQLQDGDI 209
+T EI +++ G GFP S+N C H L++ D+
Sbjct: 72 ITLLEIVRSIEDSTRTLLKGERNNGI-GFP--AGMSMNSCAAHYTVNPGEQDIVLKEDDV 128
Query: 210 INIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFKKIGKRI 269
+ ID + +G D++ T + L+ E E GI IG+ I
Sbjct: 129 LKIDFGTHSDGRIMDSAFTVAFKENLE---PLLVAAREGTETGIKSLGVDVRVCDIGRDI 185
Query: 270 SEHAEKYGFGV---------VERFVGHGVGK-VFHSEPIIYHNRNENPGCMVEGQTFTIE 319
+E Y + + GH + + H I N + + + +E
Sbjct: 186 NEVISSYEVEIGGRMWPIRPISDLHGHSISQFRIHGGISIPAVNNRDTTRIKGDSFYAVE 245
Query: 320 PILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITR 357
T G D P + F +R
Sbjct: 246 TFATTGKGS-----------IDDRPPCSHFVLNTYKSR 272
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 175 bits (446), Expect = 6e-51
Identities = 46/220 (20%), Positives = 73/220 (33%), Gaps = 18/220 (8%)
Query: 120 EYQIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGY 179
E R A E +V ++P +T EI + + +
Sbjct: 157 ALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAG 216
Query: 180 GGFPKSVCTSVNECMCHGIP---DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSD 236
FP S+N C H P D+ LQ DI ID +++G D + T D
Sbjct: 217 LAFP--TGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYD 274
Query: 237 GLKRLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEK---------YGFGVVERFVGH 287
L+K ++ GI +G+ I E E Y + GH
Sbjct: 275 ---TLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGH 331
Query: 288 GVGK-VFHSEPIIYHNRNENPGCMVEGQTFTIEPILTMGS 326
+G+ H+ + + M EG+ + IE + G
Sbjct: 332 SIGQYRIHAGKTVPIVKGGEATRMEEGEVYAIETFGSTGK 371
Score = 39.9 bits (93), Expect = 0.001
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 340 TADGNPAAQFEHTILITRTGAEILT 364
G+ AQFEHTIL+ T E+++
Sbjct: 449 DIKGSYTAQFEHTILLRPTCKEVVS 473
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 125 bits (316), Expect = 8e-33
Identities = 44/246 (17%), Positives = 85/246 (34%), Gaps = 21/246 (8%)
Query: 125 DSESIAKMRAACELAARVLDAAGKLVRPSVTTNEI-DKAVHQMIIEAGAYPSPLGYGGFP 183
+E +R +A A + + V E+ A M+ +
Sbjct: 159 SAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMDTW 218
Query: 184 KSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVK 243
+ +N H +R++ GDI++++ + GY+ +T + SD RL +
Sbjct: 219 TWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQ 278
Query: 244 VTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGKVFHSEPIIY 300
V E E G+ + K GA I + ++E K+ + GH G + H
Sbjct: 279 VNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVL--QYRTFGYGHSFGTLSHYYGREA 336
Query: 301 HN--RNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRT 358
R + + G ++EP++ G + +++
Sbjct: 337 GLELREDIDTVLEPGMVVSMEPMI-------------MLPEGLPGAGGYREHDILIVNEN 383
Query: 359 GAEILT 364
GAE +T
Sbjct: 384 GAENIT 389
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 124 bits (313), Expect = 1e-32
Identities = 62/247 (25%), Positives = 108/247 (43%), Gaps = 32/247 (12%)
Query: 122 QIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYG 180
I + I + ACE+A + + AA + + E+ V ++ GA P+
Sbjct: 126 IIKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKVEYLMKMNGAEKPA----- 180
Query: 181 GFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKR 240
F + + + HG+ ++++ GD++ ID+ Y+ D ++T + G+ ++ K
Sbjct: 181 -FDTIIASGYRSALPHGVASDKRIERGDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKE 239
Query: 241 LVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGKVFHSEP 297
+ ++ E +K + K G + K++ +YG+G E F GHGVG H P
Sbjct: 240 IYEIVLEAQKKAVESAKPGITAKELDSIARNIIAEYGYG--EYFNHSLGHGVGLEVHEWP 297
Query: 298 IIYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITR 357
+ +E + EG TIEP G I P G + E TILIT+
Sbjct: 298 RV-SQYDETV--LREGMVITIEP----G----IYIPKIG------G---VRIEDTILITK 337
Query: 358 TGAEILT 364
G++ LT
Sbjct: 338 NGSKRLT 344
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 123 bits (312), Expect = 2e-32
Identities = 61/243 (25%), Positives = 94/243 (38%), Gaps = 31/243 (12%)
Query: 125 DSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPK 184
D E + M A +A +V + + E+ + +I E + F
Sbjct: 133 DKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKIELLIRELSDGIA------FEP 186
Query: 185 SVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
V + N H P R+++ GDII +D GY D ++T G + + L ++ +V
Sbjct: 187 IVASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDERLVKIYEV 246
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGKVFHSEPIIYH 301
++ E ++G K + R E K G+G E F+ GHG+G H EP I
Sbjct: 247 VKDAQESAFKAVREGIKAKDVDSRAREVISKAGYG--EYFIHRTGHGLGLDVHEEPYI-G 303
Query: 302 NRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAE 361
E + G TFTIEP G I P G + E I++
Sbjct: 304 PDGEVI--LKNGMTFTIEP----G----IYVPGLG------G---VRIEDDIVVDEGKGR 344
Query: 362 ILT 364
LT
Sbjct: 345 RLT 347
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 123 bits (310), Expect = 3e-32
Identities = 57/247 (23%), Positives = 101/247 (40%), Gaps = 32/247 (12%)
Query: 122 QIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAY-PSPLGYG 180
I I ++ A ++A + +RP V+ E+ + + + GA S
Sbjct: 129 LIKTDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSS----- 183
Query: 181 GFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKR 240
F V + + + HG+ + ++ GD + +D Y GY D ++T G SD LK
Sbjct: 184 -FDIIVASGLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKE 242
Query: 241 LVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGKVFHSEP 297
+ + E +G+ K G + ++ ++ + G+G E F GHG+G H P
Sbjct: 243 IYNIVLEAQLRGVNGIKAGLTGREADALTRDYITEKGYG--EYFGHSTGHGIGLEIHEAP 300
Query: 298 IIYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITR 357
+ R++ + G T+EP G I P G + E I++T
Sbjct: 301 GL-AFRSDTV--LEPGMAVTVEP----G----IYIPGIG------G---VRIEDDIIVTS 340
Query: 358 TGAEILT 364
G E++T
Sbjct: 341 EGNEVIT 347
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 123 bits (310), Expect = 5e-32
Identities = 37/246 (15%), Positives = 77/246 (31%), Gaps = 21/246 (8%)
Query: 125 DSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAV-HQMIIEAGAYPSPLGYGGFP 183
SE +R ++ A + V E+ A M+ Z +
Sbjct: 159 SSEEZBLIRZGARISDIGGAATAAAISAGVPEYEVAIATTBAMVRZIARBFPYVELMDTW 218
Query: 184 KSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVK 243
+ +N H R +Z GDI++++ + GY+ +T V D + +
Sbjct: 219 IWFQSGINTDGAHNPVTBRVVZRGDILSLNCFPMIFGYYTALERTLFLZZVBDASLZIWZ 278
Query: 244 VTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGKVFHSEPIIY 300
+G+ + K GA K I +++ ++ GH G + H
Sbjct: 279 KNTAVHRRGLZLIKPGARCKDIASELNBMYRZWDLL--RYRTFGYGHSFGVLBHYYGREA 336
Query: 301 HN--RNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRT 358
R + + G ++EP++ G + ++I
Sbjct: 337 GVELREDIZTVLEPGMVVSMEPMV-------------MBPEGEPGAGGYREHDILVIKEN 383
Query: 359 GAEILT 364
E +T
Sbjct: 384 BTENIT 389
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 121 bits (307), Expect = 9e-32
Identities = 61/248 (24%), Positives = 99/248 (39%), Gaps = 40/248 (16%)
Query: 125 DSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAY-PSPLGYGGFP 183
D I K++ A E++ R + +R +T EI + + + GA + F
Sbjct: 135 DEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKEGAEGVA------FD 188
Query: 184 KSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVK 243
V + + HG + ++ GD+I ID Y D ++ G SD +K +
Sbjct: 189 TIVASGCRSALPHGKASDKVVERGDVIVIDFGATYENYCADITRVVSIGEPSDEVKEVHS 248
Query: 244 VTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGKVFHSEPIIY 300
+ E E+ + + K G + K + E + G+G E F GHG+G H P I
Sbjct: 249 IVLEAQERALKIAKAGVTGKLLDSVAREFIREKGYG--EFFGHSLGHGIGLEVHEGPAI- 305
Query: 301 HNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQF----EHTILIT 356
RN++P + E FT+EP G I +F E +++
Sbjct: 306 SFRNDSP--LPENVVFTVEP----G----IYLEG-------------KFGIRIEEDVVLK 342
Query: 357 RTGAEILT 364
G EILT
Sbjct: 343 EQGCEILT 350
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 116 bits (292), Expect = 2e-29
Identities = 56/244 (22%), Positives = 96/244 (39%), Gaps = 32/244 (13%)
Query: 125 DSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPK 184
++ + + A RV + P T ++ + + I+ G F
Sbjct: 152 EAAEVDALAKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIVAEGHSAV-----AFV- 205
Query: 185 SVCTSVNECMCHGIPDSRQLQDGDIINIDV-TVYLNGYHGDTSKTFLCGNVSDGLKRLVK 243
V + + H R+LQ GDI+ +D+ Y GY+ D+++T+ G+ S + +
Sbjct: 206 IVGSGPHGADPHHGYSDRKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYS 265
Query: 244 VTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGKVFHSEPIIY 300
+ + + G + ++ + G E FV GHG+G H EP I
Sbjct: 266 ALQRAQRAAVDAVRPGVTAAQVDAAARDVLADAGLA--EYFVHRTGHGIGLCVHEEPYI- 322
Query: 301 HNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGA 360
NE P +V G F+IEP G I +P W G A+ E +++T GA
Sbjct: 323 VAGNELP--LVAGMAFSIEP----G----IYFPGRW------G---ARIEDIVVVTENGA 363
Query: 361 EILT 364
+
Sbjct: 364 LSVN 367
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 106 bits (267), Expect = 6e-26
Identities = 38/262 (14%), Positives = 82/262 (31%), Gaps = 30/262 (11%)
Query: 123 IHDSESIAKMRAACELAARVLDAA-----------GKLVRPSVTTNEIDKA------VHQ 165
I D + +A ++ A ++ V+ GK + S +++++
Sbjct: 177 IKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQT 236
Query: 166 MIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDT 225
++ G + + + + + + GD++ + Y +
Sbjct: 237 KSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNV 296
Query: 226 SKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV 285
+T+L ++ +K C+DGA I +I + FV
Sbjct: 297 GRTYLFDP-DSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEPNFV 355
Query: 286 ---GHGVGKVFHSEPIIYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTAD 342
G G+G F ++ + +N + G T + G + +
Sbjct: 356 RNLGAGIGIEFRESSLLVNAKNPRV--LQAGMTLNLSI----GF---GNLINPHPKNSQS 406
Query: 343 GNPAAQFEHTILITRTGAEILT 364
A TI ITR+ + T
Sbjct: 407 KEYALLLIDTIQITRSDPIVFT 428
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 98.1 bits (244), Expect = 8e-23
Identities = 42/257 (16%), Positives = 78/257 (30%), Gaps = 42/257 (16%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSV-----TTNEIDKAVHQMIIEAGAYPSPL 177
+ + I MR A + R V N+I +H + G
Sbjct: 229 VKGPDEIRAMRCASHACEVAVRKMEDFARSKVGDGVTCENDIWAILHSENVRRGGEWI-- 286
Query: 178 GYGGFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDV-TVYLNGYHGDTSKTFLCGNVSD 236
+ + + R Q +II+ D V G D S+++ G+
Sbjct: 287 ----ETRLLASGPRSNPWFQECGPRVCQRNEIISFDTDLVGAYGICTDISRSWWIGDQKP 342
Query: 237 GLKR--LVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGK 291
++ E + + + K G ++ K+ ++ HGVG
Sbjct: 343 RADMIYAMQHGVEHIRTNMEMLKPGVMIPELSANTHVLDAKFQ----KQKYGCLMHGVGL 398
Query: 292 VFHSEPIIYHNRN----ENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAA 347
P++ + + + G T +E I+ G+ +
Sbjct: 399 C-DEWPLVAYPDHAVAGAYDYPLEPGMTLCVEA--------LISEE--------GGDFSI 441
Query: 348 QFEHTILITRTGAEILT 364
+ E +LIT G E LT
Sbjct: 442 KLEDQVLITEDGYENLT 458
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 91.2 bits (226), Expect = 2e-20
Identities = 39/274 (14%), Positives = 85/274 (31%), Gaps = 45/274 (16%)
Query: 122 QIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMI-------IEAGAYP 174
++ D A + + + + + +D + +V E K + + I+ +
Sbjct: 176 EVKDVNEQAFLSVSSKGSDKFMDLLSNEMVRAVD--EELKITNAKLSDKIENKIDDVKFL 233
Query: 175 SPLGYGG------------------FPKSVCTSVNECMC-HGIPDSRQLQDGDIINIDVT 215
L + + + + + QL I
Sbjct: 234 KQLSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLYGNGCILASCG 293
Query: 216 VYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGI-AVCKDGASFKKIGKRISEHAE 274
+ N Y + ++TFL + S+ + ++ + + K G + K++ + + E+ E
Sbjct: 294 IRYNNYCSNITRTFL-IDPSEEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVIEYIE 352
Query: 275 KYGFGVVERF---VGHGVGKVFHSEPIIYHNRNENPGCMVEGQTFTIEPILTMGSIECIT 331
K +V F +G +G F I + +N + + G F I +
Sbjct: 353 KTKPELVPNFTKNIGSLIGLEFRDSNFILNVKN-DYRKIQRGDCFNISF-----GFNNLK 406
Query: 332 WPDNWTTLTADGNPAAQFEHTILITRTGAEILTI 365
+ N A Q T+ I E
Sbjct: 407 DSQ------SANNYALQLADTVQIPLDETEPPRF 434
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 68.8 bits (169), Expect = 5e-13
Identities = 51/263 (19%), Positives = 94/263 (35%), Gaps = 56/263 (21%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
E I ++ A + + K + + E++ + +G + F
Sbjct: 171 FKTDEEIEIIKEAIAVTKDGIYNVLKHAKADMMEYELEAQFDFTLKSSGIK-----HHAF 225
Query: 183 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRL 241
+ + N + H + Q+Q+GD++ +D+ + Y+ D S TF G S K++
Sbjct: 226 NTILASGKNATVLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQI 285
Query: 242 VKVTEECLEKGIAVCKDGASFKKI----GKRISEHAEKYGF----GVVERFVGHGVGKVF 293
+ L++ + K G F + K ++E + G + ++ HGV
Sbjct: 286 YNIVLNALKETTEIIKPGLKFAALNEHAKKVLAEGCKAVGLIQEDEELSKYYYHGVS--- 342
Query: 294 HS------EPIIYHNRNENPGCMVEGQTFTIEP---ILTMG---SIECITWPDNWTTLTA 341
H + Y +R + EG TIEP I IE D+
Sbjct: 343 HFLGLDTHDVGTYKDRV-----LEEGMVITIEPGLYIEEESIGIRIE-----DD------ 386
Query: 342 DGNPAAQFEHTILITRTGAEILT 364
IL+T+ G E L+
Sbjct: 387 -----------ILVTKDGHENLS 398
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 68.0 bits (167), Expect = 9e-13
Identities = 65/344 (18%), Positives = 117/344 (34%), Gaps = 56/344 (16%)
Query: 57 HAKRISGLEEAMRIRR-ERELQTTTKFRKRPPLRRG-------RVSPRLPVPDHIPKPPY 108
A G++ A+ ++L +G V+ L +
Sbjct: 97 AAPEKLGVDRALAFSEINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNL 156
Query: 109 VSSTSLPDLSPEYQ----IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVH 164
+ ++ D P E IA +R A E+ A A + RP + ++ +H
Sbjct: 157 TAPATMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIH 216
Query: 165 QMIIEAGAYPSPLGYGGFPKSVCTS-VNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHG 223
GA Y ++ S N C+ H + +++DGD++ ID GY G
Sbjct: 217 HEFNRHGA--RYPSYN----TIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAG 270
Query: 224 DTSKTF-LCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFKKI----GKRISEHAEKYGF 278
D ++TF + G + + + + E LE + + + G S ++ + + K G
Sbjct: 271 DITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGI 330
Query: 279 --GVVERFVGHGVGKVF--HSEPIIYHN-----------RNENPGCMVEGQTFTIEP--- 320
G V+ + + F H + H + + G T+ P
Sbjct: 331 LKGDVDELIAQNAHRPFFMHG---LSHWLGLDVHDVGVYGQDRSRILEPGMVLTVAPGLY 387
Query: 321 ILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
I P+ + + E I+IT TG E LT
Sbjct: 388 I-----APDAEVPEQYR------GIGIRIEDDIVITETGNENLT 420
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 61.3 bits (149), Expect = 1e-10
Identities = 39/287 (13%), Positives = 83/287 (28%), Gaps = 47/287 (16%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
+ +R ++++ K V+ + E++ G +
Sbjct: 187 FKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHS----SY 242
Query: 183 PKSVCTSVNECMCH----GIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDG 237
+ N + H G P+ R +Q+GD+ D+ + D + +F G +
Sbjct: 243 TCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTAD 302
Query: 238 LKRLVKVTEECLEKGIAVCKDGASFKKI----GKRISEHAEKYGF-----------GVVE 282
K + + + K G + + + E G +
Sbjct: 303 QKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAHLGA 362
Query: 283 RFVGHGVG--------------KVFHSEPIIYHNRNENPGCMVEGQTFTIEP---ILTMG 325
F+ HG+G + + G T+EP +
Sbjct: 363 VFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQPGMVLTVEPGIYFIDHL 422
Query: 326 SIECITWPDNWTTLTAD------GNPAAQFEHTILITRTGAEILTIC 366
E + P + + G + E +++T +G E+LT
Sbjct: 423 LDEALADPARASFFNREVLQRFRGFGGVRIEEDVVVTDSGIELLTCV 469
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 60.4 bits (147), Expect = 3e-10
Identities = 55/369 (14%), Positives = 105/369 (28%), Gaps = 68/369 (18%)
Query: 50 CPNKLVVHAKRISGLEEAMRIRRERELQTTTKFRKRPPLRRGRVSPRLPVPDHIPKPPYV 109
+ H + + LQ K P + R + + +
Sbjct: 83 YRPEDFWHKVPPEPNDFWTDSFDIKLLQQADAVEKFLPYDKSRFAYVGEYIEVAKALGF- 141
Query: 110 SSTSLPDLSP--EYQ--IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQ 165
+ + + YQ + MR A +LA AA + R + +I+ A
Sbjct: 142 DNVNPDRVLHYLHYQRAYKTDYELDCMREANKLAVAGHKAAEQAFREGKSEFDINLAYAA 201
Query: 166 MIIEAGAYPSPLGYGGFPKSVCTSVNECMCH-GIPDSRQLQDGDIINIDVTVYLNGYHGD 224
+ + V + + + H D+ ++ ID +GY D
Sbjct: 202 ASRQGDNDVP------YTSIVALNEHASILHYMQCDTVAPKESRSFLIDAGANYHGYAAD 255
Query: 225 TSKTF-LCGNVSDG-LKRLVKVTEECLEKGIAVCKDGASFKKI----GKRISEHAEKYGF 278
++T+ G + + L++ ++ + K G ++ I I++ G
Sbjct: 256 ITRTYAQEGVHNSAMFRDLIQAVDKVTLTLVDSLKPGVAYTDIHLLAHDGIAQILHDTGM 315
Query: 279 -----------GVVERFVGHGVG-----------------KVFHSEPIIYHNRNENPGCM 310
G+ F HG+G + H +
Sbjct: 316 VNLTPPEIVEMGITRTFFPHGIGHFLGLQVHDVGGLVNDDRGTPKPAPDDHPFLRCTRMV 375
Query: 311 VEGQTFTIEP-------ILTMGSIECITWPDNWTTLTADGNPAAQF--------EHTILI 355
Q FTIEP +L + NW T+ + E I++
Sbjct: 376 EARQVFTIEPGLYFIDSLLRDLKATPASKYINWDTI-------DAYKPFGGIRIEDNIIV 428
Query: 356 TRTGAEILT 364
R E +T
Sbjct: 429 HRDKNENMT 437
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 59.4 bits (144), Expect = 7e-10
Identities = 55/365 (15%), Positives = 98/365 (26%), Gaps = 63/365 (17%)
Query: 50 CPNKLVVHAKRISGLEEAMRIRRE-RELQTTTKFRKRPPLRRGRVSPRLPVPDHIPKPPY 108
H E + L + K P + R + + + +
Sbjct: 83 YRPVDFWHKVPD-EPNEYWADYFDIELLVKPDQVEKLLPYDKARFA-YIGEYLEVAQALG 140
Query: 109 VSSTSLPDLSPEYQ----IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVH 164
+ + Y +A MR A ++A + AA + EI +A
Sbjct: 141 FELMNPEPVMNFYHYHRAYKTQYELACMREANKIAVQGHKAARDAFFQGKSEFEIQQAYL 200
Query: 165 QMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGI-PDSRQLQDGDIINIDVTVYLNGYHG 223
+ + V + N + H D ID NGY
Sbjct: 201 LATQHSENDNP------YGNIVALNENCAILHYTHFDRVAPATHRSFLIDAGANFNGYAA 254
Query: 224 DTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFKKI----GKRISEHAEKYGF- 278
D ++T+ LV ++ + G + ++ +R+++ +
Sbjct: 255 DITRTY-DFTGEGEFAELVATMKQHQIALMNQLAPGKLYGELHLDCHQRVAQTLSDFNIV 313
Query: 279 ----------GVVERFVGHGVG-----------------KVFHSEPIIYHNRNENPGCMV 311
G+ F HG+G + H EP H +
Sbjct: 314 DLSADEIVAKGITSTFFPHGLGHHIGLQVHDVGGFMADEQGAHQEPPEGHPFLRCTRKIE 373
Query: 312 EGQTFTIEP-------ILTMGSIECITWPDNWTTLTADGNPAAQF-----EHTILITRTG 359
Q FTIEP +L + NW + F E I++
Sbjct: 374 ANQVFTIEPGLYFIDSLLGDLAATDNNQHINWDKV----AELKPFGGIRIEDNIIVHEDS 429
Query: 360 AEILT 364
E +T
Sbjct: 430 LENMT 434
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 7e-09
Identities = 46/213 (21%), Positives = 72/213 (33%), Gaps = 59/213 (27%)
Query: 3 LAASVSHGHGSSSF---LHGSAKPKLNSA-----SALFTGAPLSLSPSSTGRQARCPNKL 54
L S+ + G S + + ++ S L G + +S + L
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG------AKNL 377
Query: 55 VV--HAKRISGLEEAMR-IRREREL-QTTTKFRKRPPLRRGRVSPR-LPV--PDHIP--K 105
VV + + GL +R + L Q+ F +R + S R LPV P H
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL----KFSNRFLPVASPFHSHLLV 433
Query: 106 PPYVSSTSLPDLS-------------PEYQIHDSESIAKMRAACELAARVLDAAGKLVRP 152
P S DL P Y D + + ++ R++D ++R
Sbjct: 434 P--ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG--SISERIVDC---IIRL 486
Query: 153 SV----TTNEIDKAVHQMIIEAGAYPSPLGYGG 181
V TT KA H I++ G P G G
Sbjct: 487 PVKWETTTQ--FKATH--ILDFG----PGGASG 511
Score = 50.4 bits (120), Expect = 7e-07
Identities = 61/355 (17%), Positives = 101/355 (28%), Gaps = 131/355 (36%)
Query: 97 LPVPDHIPKPPYVSST--SLP-----------------DLSPEYQIHDSESIAKMRAACE 137
L P + P Y+ S S P +P E + ++ A
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG------ELRSYLKGATG 272
Query: 138 LAARVLDAAGKLVRPSVTTNEIDKAVHQMI-------IEA-GAYPSPLGYGGFPKSV--- 186
+ ++ A + + + +V + I + AYP+ P S+
Sbjct: 273 HSQGLVTAV--AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT----SLPPSILED 326
Query: 187 CTSVNE----CM--CHGIPDSRQLQDG-DIIN--------IDVTVYLNGYHGDTSKTF-L 230
NE M + Q+QD + N +++++ NG K +
Sbjct: 327 SLENNEGVPSPMLSISNLTQE-QVQDYVNKTNSHLPAGKQVEISLV-NGA-----KNLVV 379
Query: 231 CGNVSDGLKRLVKVTEECLEKGIAVCKDGASFKKI--GKRISEHAEKYGFGVVERFVGHG 288
G L L L K A G +I +R K F RF+
Sbjct: 380 SGPPQS-LYGLNLT----LRKAKA--PSGLDQSRIPFSER------KLKFSN--RFL--P 422
Query: 289 VGKVFHSE---------------------------PIIYHNRNENPGCMVEGQTFTIEPI 321
V FHS P +Y + G + + +I
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-VYDTFD---GSDLRVLSGSISER 478
Query: 322 LTMGSIECIT-WPDNWTTLTA-------DGNPAAQFEHTILITR----TGAEILT 364
+ ++CI P W T T D P +L R TG ++
Sbjct: 479 I----VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIV 529
Score = 38.1 bits (88), Expect = 0.004
Identities = 47/319 (14%), Positives = 94/319 (29%), Gaps = 103/319 (32%)
Query: 85 RP-PLRRGRVSPRLPVP--DHIPKPPYVS------STSLPDLSPEYQIHDSESIAKMRAA 135
RP L G + L VP S + LP+ + + D +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFF----IASQLQEQFNKILPEPTEGFAADDEPT-----TP 57
Query: 136 CELAARVLDAAGKLVRPSVTT----------NEIDKA------VHQMIIE-AGAYPSPLG 178
EL + L LV PS E + +H + + + L
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 179 YGGFPKSVCTS-VNECMCHGIPDSRQ--------LQDGD--IINI-----DVTVYLNG-- 220
K + + + + P ++ + +G+ ++ I + Y
Sbjct: 118 K---TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 221 --YHGDTSKTF---LCGNVSDGLKRLVKVTEEC---LEKGIAVCK--DGASFKKIGKRIS 270
Y T L ++ L L++ T + +G+ + + + S +
Sbjct: 175 DLY--QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS--------N 224
Query: 271 EHAEKYGFGVVERFVGHGVGKVFHSEPII-------Y----HNRNENPGCM---VEGQTF 316
+ Y + + S P+I Y PG + ++G T
Sbjct: 225 TPDKDY-------LLSIPI-----SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 317 TIEPILTMGSI-ECITWPD 334
+ ++T +I E +W
Sbjct: 273 HSQGLVTAVAIAETDSWES 291
Score = 31.9 bits (72), Expect = 0.35
Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 37/150 (24%)
Query: 134 AAC------ELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVC 187
A+ E V+ G ++ +V +E+ ++ + MI A P V
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI--AIN----------PGRVA 1818
Query: 188 TSVNECMCHGIPDSRQLQDGDII-----NIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV 242
S ++ + + + G ++ N++ Y+ GD L +
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA--GDLR----------ALDTVT 1866
Query: 243 KVTEECLEKGIAVCKDGASFKKIGKRISEH 272
V + I + + S + + H
Sbjct: 1867 NVLNFIKLQKIDIIELQKSLSL--EEVEGH 1894
Score = 27.7 bits (61), Expect = 8.3
Identities = 27/149 (18%), Positives = 45/149 (30%), Gaps = 51/149 (34%)
Query: 28 ASALFTGAPLSL---SPSSTGRQARCPNKLVVHAKRISGLEEAMRIRRERELQTTTKFRK 84
A A F G SL + A L A +S +E + +
Sbjct: 1755 ADATFAG--HSLGEYA-------A-----LASLADVMS-IESLVEVVFY----------- 1788
Query: 85 RPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQIHDSESIAKMRAACELAARVLD 144
RG D + + S+ + ++P ++ S S ++ E +
Sbjct: 1789 -----RGMTMQVAVPRDELGR----SNYGMIAINPG-RVAASFSQEALQYVVERVGK--- 1835
Query: 145 AAGKLVRPSVTTNEI--DKAVHQMIIEAG 171
G LV EI +Q + AG
Sbjct: 1836 RTGWLV-------EIVNYNVENQQYVAAG 1857
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 1e-05
Identities = 49/335 (14%), Positives = 88/335 (26%), Gaps = 92/335 (27%)
Query: 7 VSHGHGSSSFLHGSAKPKLNSASALFTGAPLSLSPSSTGRQARCPNKLVVHAKRISGLEE 66
+S H S + K L + P R+ N +S + E
Sbjct: 289 ISLDHHSMTLTPDEVKSLL----LKYLDCRPQDLP----REVLTTNPRR-----LSIIAE 335
Query: 67 AMRIRRER-------ELQTTTKFRKR------PPLRRGRVSPRLPV-PDHIPKPPYVSST 112
++R T + P R RL V P P + S
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVFPPSAHIPTILLSL 394
Query: 113 SLPDLSPEYQIHDSESIAKMRAACELAARVL---DAAGKLVR-PSV-----TTNEIDKAV 163
D+ D + +L L + PS+ E + A+
Sbjct: 395 IWFDVIKS----DVMVVVN-----KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 164 HQMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHG 223
H+ I++ Y P + IP D + ++ G+H
Sbjct: 446 HRSIVD--HYNIPKTF-------------DSDDLIPPY---LDQYFYS-----HI-GHHL 481
Query: 224 DT----------SKTFLCGNVSDG--LKRLVKVTEECLEKGIAVCKDGASFKKIGKRISE 271
FL D L++ ++ ++ K I +
Sbjct: 482 KNIEHPERMTLFRMVFL-----DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 272 HAEKYGFGVVERFVGHGVGKVFHSEPIIYHNRNEN 306
+ KY ER V + + E + ++ +
Sbjct: 537 NDPKY-----ERLVNAILDFLPKIEENLICSKYTD 566
Score = 42.5 bits (99), Expect = 2e-04
Identities = 46/344 (13%), Positives = 85/344 (24%), Gaps = 132/344 (38%)
Query: 64 LEEAMRIR-RERELQTTTKFRKRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQ 122
L ++ R+ + T +R L + ++ +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYND--NQVFA-KYNVSRL---------------- 134
Query: 123 IHDSESIAKMR-AACELAARVLDAAGKLVRPS--VTTNEIDKAVHQMIIEAGAYPSPLGY 179
+ K+R A EL RP+ V + +
Sbjct: 135 ----QPYLKLRQALLEL------------RPAKNVL-------IDGV------------- 158
Query: 180 GGFPKS-----VCTS--VNECMCHGI----------PDS--RQLQDGDIINIDVTVYLNG 220
G K+ VC S V M I P++ LQ ++ + +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ--KLLYQIDPNWTSR 216
Query: 221 YHGDTSKTFLCGNVSDGLKRLV--KVTEECL--------EKGIAV----CK--------- 257
++ ++ L+RL+ K E CL K CK
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 258 --DGASFKKIGKRISEHAEKYGF------GVVERFVGHGVGKVFHSEPIIYHNRNENPGC 309
D S +H ++ +++ + P
Sbjct: 277 VTDFLSAATTTHISLDHHSM-TLTPDEVKSLLLKYLDCRPQDL--------------PRE 321
Query: 310 MVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTI 353
++ + I TW DNW + D + I
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATW-DNWKHVNCD-----KLTTII 359
Score = 38.7 bits (89), Expect = 0.003
Identities = 28/145 (19%), Positives = 49/145 (33%), Gaps = 42/145 (28%)
Query: 203 QLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASF 262
Q Q DI+ +V+ + + + F C +V D K ++ EE I + KD S
Sbjct: 15 QYQYKDIL----SVFEDAFVDN----FDCKDVQDMPKSILS-KEEI--DHIIMSKDAVSG 63
Query: 263 KKIGKRISEHAEKYGFGVVERFVGHGVGK-------VFHSEP----------IIYHNRNE 305
R+ +V++FV + +E I +R
Sbjct: 64 T---LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 306 NPGCMVEGQTFT------IEPILTM 324
N + Q F ++P L +
Sbjct: 121 N-----DNQVFAKYNVSRLQPYLKL 140
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.52
Identities = 7/33 (21%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
Query: 125 DSESIAKMRAACELAARVLDAAGKLVRPSVTTN 157
+ +++ K++A+ +L A D+A P++
Sbjct: 18 EKQALKKLQASLKLYAD--DSA-----PALAIK 43
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 29.9 bits (68), Expect = 1.6
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 286 GHGVGKVF--HSEPIIYHNRNENPGCMVEGQTFTIEP 320
GHGVG H P + + + G T EP
Sbjct: 488 GHGVGSFLNVHEGPCGISYKTFSDEPLEAGMIVTDEP 524
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 29.4 bits (65), Expect = 2.2
Identities = 5/55 (9%), Positives = 15/55 (27%), Gaps = 1/55 (1%)
Query: 113 SLPDLSPEYQIHDSESIAKMRAACELAARVLDAAG-KLVRPSVTTNEIDKAVHQM 166
++P + +++ + + + G L E +H
Sbjct: 496 NMPQPTFDFRFPAGRTSKEAEDMMTDMCVMSAKIGGFLPGSLPQFMEPGLVLHLG 550
>3ryd_A Inositol monophosphatase family protein; impase fold, FIG
superfamily protein, hydrolase; HET: SRT; 2.37A
{Staphylococcus aureus} PDB: 3qmf_A
Length = 273
Score = 28.4 bits (64), Expect = 3.9
Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 19/64 (29%)
Query: 128 SIAKMRAACELAARVLDAAGKLVRPS---------------VTTNEIDKAVHQMIIEA-- 170
+ ++ +L L ++ VT +DK + Q +
Sbjct: 10 TDKTLQQIDKLICSWLKQIDNVIPQLIMEMTTETKRHRFDLVT--NVDKQIQQQFQQFLA 67
Query: 171 GAYP 174
+P
Sbjct: 68 TYFP 71
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase;
HET: B12 DCA; 2.00A {Propionibacterium freudenreichii
subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B*
2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Length = 637
Score = 28.5 bits (64), Expect = 4.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 127 ESIAKMRAACELAARVLDAAG 147
+IA++RA E AR+ + G
Sbjct: 291 LTIARLRALREAWARIGEVFG 311
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear
receptor, structural proteomic europe, spine, structural
genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB:
1z5x_U* 2q60_A
Length = 282
Score = 28.2 bits (63), Expect = 4.2
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 58 AKRISGLEEAMRIRRERELQTTTKFRKRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDL 117
R S EA ++ ER Q + + +PV + V + +
Sbjct: 15 VPRGSHKREA--VQEER--QRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYV 70
Query: 118 SPEYQIHDSESIAKMRAACELAARVL 143
++ S + C+ A + L
Sbjct: 71 EANMGLNPSSPNDPVTNICQAADKQL 96
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 27.9 bits (63), Expect = 7.0
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 18/53 (33%)
Query: 49 RC--PN----------KLVVHAKRISGLEEAMRIRRE----RELQTTTKFRKR 85
RC N V H R GL E +R+RR R T+F R
Sbjct: 586 RCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGR--IEYTRFYNR 636
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: 1PE; 1.60A {Methanosarcina
maze}
Length = 429
Score = 27.7 bits (62), Expect = 7.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 346 AAQFEHTILITRTGAEI 362
AAQ H I+I GA +
Sbjct: 177 AAQTVHNIIIVEEGATL 193
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold,
RRM domain, RNA recogntion, aminoacyl-tRNA synthetase,
ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB:
3hfv_A* 3teg_A* 3tup_A
Length = 415
Score = 27.5 bits (61), Expect = 7.6
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 163 VHQMIIEAGAYPSPLGYGGFPKSVCTSVNE-CMC-HGIPDSRQLQDGDI 209
+ Q ++ + +G+ + M + IPD R D
Sbjct: 258 MEQQLVNSAGAQDRIGWA-----FGLGLERLAMILYDIPDIRLFWCEDE 301
>3nnq_A Integrase P46, N-terminal domain of moloney murine leukemia VIRU
integrase; retroviral integrase, Zn finger; 2.69A
{Moloney murine leukemia virus}
Length = 114
Score = 26.3 bits (57), Expect = 8.7
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 118 SPEYQIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQ 165
Y + D + + K+ A + + GK V P T E+ +HQ
Sbjct: 12 HFHYTVTDIKDLTKLGAIYDKTKKYWVYQGKPVMPDQFTFELLDFLHQ 59
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2, lyase; 1.65A {Shewanella amazonensis}
Length = 240
Score = 26.9 bits (60), Expect = 9.4
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 265 IGKRISEHAEKYGFGVV 281
R+ A K G V
Sbjct: 207 PSARVETQARKKGLRRV 223
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 26.9 bits (60), Expect = 9.8
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 151 RPS----VTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGI 198
RPS DK + I G P + + P + T+V + +CH +
Sbjct: 21 RPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.405
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,783,950
Number of extensions: 361803
Number of successful extensions: 1180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1078
Number of HSP's successfully gapped: 65
Length of query: 366
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 271
Effective length of database: 4,049,298
Effective search space: 1097359758
Effective search space used: 1097359758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)