RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 017786
(366 letters)
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 206 bits (524), Expect = 2e-65
Identities = 110/246 (44%), Positives = 154/246 (62%), Gaps = 3/246 (1%)
Query: 122 QIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYG 180
I E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY
Sbjct: 2 SIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYH 61
Query: 181 GFPKSVCTSVNECMCHGIP-DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLK 239
G+PKSVC S+NE +CHGIP D++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +
Sbjct: 62 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGE 121
Query: 240 RLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPII 299
RL ++T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP +
Sbjct: 122 RLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQV 181
Query: 300 YHNRNENPGCMVE-GQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRT 358
H + +++ G TFTIEP++ G E T D WT T D + +AQ+EHTI++T
Sbjct: 182 LHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDN 241
Query: 359 GAEILT 364
G EILT
Sbjct: 242 GCEILT 247
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 174 bits (442), Expect = 2e-53
Identities = 89/245 (36%), Positives = 132/245 (53%), Gaps = 2/245 (0%)
Query: 122 QIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGG 181
+I I KM+ A + A L K++ P T +++ V ++ + P+ GYGG
Sbjct: 3 RIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGG 62
Query: 182 FPKSVCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKR 240
+ + C SVNE + HG+P + ++GDI+++DV G +GD + T++ G + K
Sbjct: 63 YKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKE 122
Query: 241 LVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIY 300
LV+VT E LEK I + K G + I E E GF V+ +VGHGVG+ H +P I
Sbjct: 123 LVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQIP 182
Query: 301 HNRNENPGC-MVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTG 359
+ G + +G T IEP+++ G + D WT +T DG+ A FEHTILIT G
Sbjct: 183 NYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTILITENG 242
Query: 360 AEILT 364
AEILT
Sbjct: 243 AEILT 247
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 156 bits (394), Expect = 1e-45
Identities = 56/297 (18%), Positives = 96/297 (32%), Gaps = 40/297 (13%)
Query: 95 PRLPVPDHIPKPPY------------VSSTSLPDLSPEYQIH----DSESIAKMRAACEL 138
P +P+ D P + T+ + E + E R A E
Sbjct: 7 PSVPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFREAAEA 66
Query: 139 AARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNEC-MCHG 197
+V ++P +T EI + + + FP +
Sbjct: 67 HRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPN 126
Query: 198 IPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCK 257
D+ LQ DI ID +++G D + T D L+K ++ GI
Sbjct: 127 AGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYD---TLLKAVKDATNTGIKCAG 183
Query: 258 DGASFKKIGKRISEH---------AEKYGFGVVERFVGHGVGKVFH-SEPIIYHNRNENP 307
+G+ I E + Y + GH +G+ + + +
Sbjct: 184 IDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVKGGEA 243
Query: 308 GCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
M EG+ + IE + G + G+ AQFEHTIL+ T E+++
Sbjct: 244 TRMEEGEVYAIETFGSTG----------KGVVDIKGSYTAQFEHTILLRPTCKEVVS 290
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 144 bits (362), Expect = 1e-41
Identities = 74/245 (30%), Positives = 119/245 (48%), Gaps = 3/245 (1%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
+ E + ++ + A+V + +P +TT E+D ++ E GA +P+ F
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 183 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKR-L 241
P C SVNE + HGIP R +++GD++NIDV+ NGY+ DT +F+ G D +K+ +
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 242 VKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
V E IA K G IGK + A + V++ GHGVG H P
Sbjct: 123 CDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVL 182
Query: 302 N--RNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTG 359
N ++ + EG IEP ++ + + W T+D + AQ EHT+++T+ G
Sbjct: 183 NYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDG 242
Query: 360 AEILT 364
+ T
Sbjct: 243 PILTT 247
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 129 bits (325), Expect = 6e-36
Identities = 53/255 (20%), Positives = 90/255 (35%), Gaps = 30/255 (11%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSV 186
E IA +R A E+ A A + RP + ++ +H GA Y + V
Sbjct: 3 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGA-----RYPSYNTIV 57
Query: 187 CTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKVT 245
+ N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 58 GSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIV 117
Query: 246 EECLEKGIAVCKDGAS---------------FKKIGKRISEHAEKYGFGVVERFVGHGVG 290
E LE + + + G S K+G + E F HG+
Sbjct: 118 LESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLS 177
Query: 291 KVFHSEPIIYHN-RNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQF 349
+ + + G T+ P + + +
Sbjct: 178 HWLGLDVHDVGVYGQDRSRILEPGMVLTVAP--------GLYIAPDAEVPEQYRGIGIRI 229
Query: 350 EHTILITRTGAEILT 364
E I+IT TG E LT
Sbjct: 230 EDDIVITETGNENLT 244
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 123 bits (309), Expect = 4e-34
Identities = 63/238 (26%), Positives = 103/238 (43%), Gaps = 25/238 (10%)
Query: 129 IAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCT 188
K+ A E+A +V + A KL RP + E+ +++ +MI+E G P+ +
Sbjct: 3 TEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPAFPVNLSINEIAA- 61
Query: 189 SVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEEC 248
D+ L++GD + IDV V+++G+ DT+ T G D L++ +E
Sbjct: 62 ----HYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEED---ELMEAAKEA 114
Query: 249 LEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP--IIYHNRNEN 306
L I+V + G K++GK I K GF + GH + + I R +
Sbjct: 115 LNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIYRPHD 174
Query: 307 PGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEILT 364
+ EG F IEP T+G+ AQFEHTI++ + + T
Sbjct: 175 NYVLKEGDVFAIEPFATIGA---------------RNGIVAQFEHTIIVEKDSVIVTT 217
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 118 bits (295), Expect = 5e-32
Identities = 50/241 (20%), Positives = 99/241 (41%), Gaps = 26/241 (10%)
Query: 125 DSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPK 184
E I + ACE+A + + AA + + E+ V ++ GA F
Sbjct: 2 TKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPA-----FDT 56
Query: 185 SVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
+ + + HG+ ++++ GD++ ID+ N Y+ D ++T + G+ ++ + + ++
Sbjct: 57 IIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYEI 116
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVG-KVFHSEPIIYHNR 303
E ++ + K G + K++ E ++YG+G + H +G V
Sbjct: 117 VLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYG---DYFIHSLGHGVGLEIHEWPRIS 173
Query: 304 NENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRTGAEIL 363
+ + EG TIEP + + + E T+LIT GA+ L
Sbjct: 174 QYDETVLKEGMVITIEPGIYI-----------------PKLGGVRIEDTVLITENGAKRL 216
Query: 364 T 364
T
Sbjct: 217 T 217
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 116 bits (291), Expect = 3e-31
Identities = 45/246 (18%), Positives = 86/246 (34%), Gaps = 17/246 (6%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSP-LGYGG 181
I +E +R +A A + + V E+ Q ++ A A +
Sbjct: 2 IKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMD 61
Query: 182 FPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRL 241
+ +N H +R++ GDI++++ + GY+ +T + SD RL
Sbjct: 62 TWTWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRL 121
Query: 242 VKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVE---RFVGHGVGKVFHSEPI 298
+V E E G+ + K GA I + ++E K+ G ++
Sbjct: 122 WQVNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGREA 181
Query: 299 IYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGNPAAQFEHTILITRT 358
R + + G ++EP I P+ G + +++
Sbjct: 182 GLELREDIDTVLEPGMVVSMEP--------MIMLPEGLP-----GAGGYREHDILIVNEN 228
Query: 359 GAEILT 364
GAE +T
Sbjct: 229 GAENIT 234
>d1ccwb_ c.1.19.2 (B:) Glutamate mutase, large subunit {Clostridium
cochlearium [TaxId: 1494]}
Length = 483
Score = 28.2 bits (63), Expect = 1.7
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 114 LPDLSPEYQIHDS--ESIAKMRAACELAARVLDAAG 147
+ +++ Y + + IA +R E L A G
Sbjct: 245 VKNITVGYGECGNMIQDIAALRCLEEQTNEYLKAYG 280
>d1g0ha_ e.7.1.1 (A:) Archaeal inositol
monophosphatase/fructose-1,6-bisphosphatase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 252
Score = 27.8 bits (60), Expect = 1.9
Identities = 6/57 (10%), Positives = 13/57 (22%), Gaps = 18/57 (31%)
Query: 137 ELAARVLDAAGKLVRP-----------------SVTTNEIDKAVHQMIIEAGAYPSP 176
E+ + K + P T DK + ++ +
Sbjct: 5 EIGKNIAKEIEKEILPYFGRKDKSYVVGTSPSGDETE-IFDKISEDIALKYLKSLNV 60
>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
{Escherichia coli [TaxId: 562]}
Length = 228
Score = 27.0 bits (59), Expect = 2.9
Identities = 7/48 (14%), Positives = 12/48 (25%)
Query: 237 GLKRLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERF 284
G K + + GI A + R ++ V
Sbjct: 34 GAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWAL 81
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus
[TaxId: 274]}
Length = 170
Score = 26.4 bits (57), Expect = 4.1
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 80 TKFRKRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSP 119
T F + +P LP P+ +PK P +P P
Sbjct: 136 TPFSRL----YRGAAPPLPPPEALPKGP--EEGEIPREDP 169
>d1xi6a_ e.7.1.1 (A:) Archaeal inositol
monophosphatase/fructose-1,6-bisphosphatase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 249
Score = 26.5 bits (57), Expect = 4.5
Identities = 8/82 (9%), Positives = 19/82 (23%), Gaps = 18/82 (21%)
Query: 131 KMRAACELAARVLDAAGKLVRP-----------------SVTTNEIDKAVHQMIIEAGAY 173
K++ E+A ++ + P T +DK +I+
Sbjct: 1 KLKFWREVAIDIISDFETTIMPFFGNPDGGKLVKISPSGDETK-LVDKLAEDLILSRITE 59
Query: 174 PSPLGYGGFPKSVCTSVNECMC 195
+ +
Sbjct: 60 LGVNVVSEEVGVIDNESEYTVI 81
>d1jr2a_ c.113.1.1 (A:) Uroporphyrinogen III synthase (U3S, HemD)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 260
Score = 26.5 bits (57), Expect = 5.2
Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 8/89 (8%)
Query: 193 CMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKG 252
I + + I + Y + F ++ LK + +++ + +++
Sbjct: 160 IAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQI 219
Query: 253 IAVCKDGASFKKIGKRISEHAEKYGFGVV 281
IG + G V
Sbjct: 220 KFAA--------IGPTTARALAAQGLPVS 240
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 76
Score = 24.7 bits (54), Expect = 6.8
Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 198 IPDSRQLQDGDIINIDVTV 216
+ + +LQ DI+ I V+V
Sbjct: 59 VGEDYELQFNDIVKI-VSV 76
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 25.9 bits (55), Expect = 8.5
Identities = 11/100 (11%), Positives = 26/100 (26%), Gaps = 1/100 (1%)
Query: 68 MRIRRERELQTTTKFRKRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQIHDSE 127
R + R + D++ D+
Sbjct: 176 PSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTN 235
Query: 128 SIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMI 167
R A ++ R AA + R + ++ K+ +++
Sbjct: 236 R-GDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 274
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 25.8 bits (56), Expect = 9.4
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 12/37 (32%)
Query: 49 RC--PN----------KLVVHAKRISGLEEAMRIRRE 73
RC PN K+V+ R +G+ E +RI R+
Sbjct: 607 RCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRK 643
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.405
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,409,518
Number of extensions: 69181
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 17
Length of query: 366
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 279
Effective length of database: 1,213,086
Effective search space: 338450994
Effective search space used: 338450994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)