BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017787
         (366 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
           Tritrichomonas Foetus With Rvp Bound
 pdb|1ME9|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
           Tritrichomonas Foetus With Imp Bound
 pdb|1MEH|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
           Tritrichomonas Foetus With Imp And Moa Bound
          Length = 503

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 47  VHLTPYFPSVSDFATSFSSFVVFDHRDSCINLVNQIIWDVK 87
           + LT     VSD  T FS  V   H+D+ ++  N+IIW+ K
Sbjct: 154 IDLTQTETKVSDMMTPFSKLVTA-HQDTKLSEANKIIWEKK 193


>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
           Tritrichomonas Foetus With Rvp And Moa Bound
 pdb|1MEI|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
           Tritrichomonas Foetus With Xmp And Mycophenolic Acid
           Bound
 pdb|1MEW|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
           Tritrichomonas Foetus With Xmp And Nad Bound
 pdb|1AK5|A Chain A, Inosine Monophosphate Dehydrogenase (impdh) From
           Tritrichomonas Foetus
          Length = 503

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 47  VHLTPYFPSVSDFATSFSSFVVFDHRDSCINLVNQIIWDVK 87
           + LT     VSD  T FS  V   H+D+ ++  N+IIW+ K
Sbjct: 154 IDLTQTETKVSDMMTPFSKLVTA-HQDTKLSEANKIIWEKK 193


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,799,455
Number of Sequences: 62578
Number of extensions: 423856
Number of successful extensions: 895
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 2
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)