BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017787
         (366 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0CM56|CAS1_CRYNJ Probable O-acetyltransferase CAS1 OS=Cryptococcus neoformans var.
           neoformans serotype D (strain JEC21 / ATCC MYA-565)
           GN=CAS1 PE=3 SV=1
          Length = 960

 Score = 34.7 bits (78), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 142 GDSQARLLVVSLLSLVLDQERVDSIRGDLFKRHSDYDIVI-DEIG---MKLDFIWAPFET 197
           GDS  R L  +    V    +   + G+   +H+D  +++ D +G   ++L+F W P+  
Sbjct: 113 GDSTVRQLYFAAARKVGKTSKAWELEGE---KHTDRSLLVSDPLGGPSLELEFWWDPYLN 169

Query: 198 NLTDLVIKFKEKRKYPDVLVMGTGLWHM 225
           +   + +   +      +LVMG+GLW++
Sbjct: 170 SSKTIGLLSGQSSVPSSLLVMGSGLWYL 197


>sp|P0CM57|CAS1_CRYNB Probable O-acetyltransferase CAS1 OS=Cryptococcus neoformans var.
           neoformans serotype D (strain B-3501A) GN=CAS1 PE=3 SV=1
          Length = 960

 Score = 34.7 bits (78), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 142 GDSQARLLVVSLLSLVLDQERVDSIRGDLFKRHSDYDIVI-DEIG---MKLDFIWAPFET 197
           GDS  R L  +    V    +   + G+   +H+D  +++ D +G   ++L+F W P+  
Sbjct: 113 GDSTVRQLYFAAARKVGKTSKAWELEGE---KHTDRSLLVSDPLGGPSLELEFWWDPYLN 169

Query: 198 NLTDLVIKFKEKRKYPDVLVMGTGLWHM 225
           +   + +   +      +LVMG+GLW++
Sbjct: 170 SSKTIGLLSGQSSVPSSLLVMGSGLWYL 197


>sp|A4YM47|MASZ_BRASO Malate synthase G OS=Bradyrhizobium sp. (strain ORS278) GN=glcB
           PE=3 SV=1
          Length = 724

 Score = 32.0 bits (71), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 183 EIGMKLDFIWAPFETNLTDLVIKFKEKRKYPDVLVMGTGLWHMLHVGNASDYGVSLRSLK 242
           + G+  D  WA     L DL  K +E  K+ D L      WH+ + G A D G     LK
Sbjct: 26  KTGIDPDAFWAGVAAILRDLGSKNRELLKFRDTLQDKIDAWHLANKGKAFDLGAYTAFLK 85

Query: 243 SSVVSLLP 250
             +  LLP
Sbjct: 86  -EIGYLLP 92


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.139    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,651,541
Number of Sequences: 539616
Number of extensions: 5745752
Number of successful extensions: 16060
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 16055
Number of HSP's gapped (non-prelim): 7
length of query: 366
length of database: 191,569,459
effective HSP length: 119
effective length of query: 247
effective length of database: 127,355,155
effective search space: 31456723285
effective search space used: 31456723285
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)