BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017788
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
Query: 12 KNLVNLKEIDLSYSRQLKKLP-DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
+ LVNL+ + L ++ ++ LP ++ +NL++L ++ S L +I +L KL LD+R
Sbjct: 180 QGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIR-NSPLSALGPAIHHLPKLEELDLR 237
Query: 71 LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP--- 127
C L P L+RL L CSNL +P I L++LE L L+ C L LP
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
Query: 128 -ELPCN 132
+LP N
Sbjct: 298 AQLPAN 303
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 1 MERTNLRFLI--LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSI 58
+E T +R L + NL NLK + + S P + LE L L+ C++L
Sbjct: 190 LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF 249
Query: 59 QYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINL 109
+ L L ++ C NL LP + L L++L L GC NL R+P I L
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 28 LKKLPDLSQA-RNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCE-- 84
L +LPD Q LE L L A + L +SI L++L L +R C L LP L
Sbjct: 116 LXELPDTXQQFAGLETLTL-ARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTD 174
Query: 85 -------LISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN 119
L++LQ L L + +R +P SI NL L+ L ++N
Sbjct: 175 ASGEHQGLVNLQSLRLE-WTGIRSLPASIANLQNLKSLKIRN 215
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 7/138 (5%)
Query: 3 RTNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLS 62
+T F I + + SY + LKK+ S L + +L E I
Sbjct: 194 KTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGXKALDE----IAIPK 249
Query: 63 KLVTLDMRLCKNLNRLPS--SLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC 120
+ ++ L +N L + ++ ++ L SGCSNL ++ + LE +C
Sbjct: 250 NVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVXDNSAIETLEPRVFXDC 309
Query: 121 SKLLSLPELPCNLFSVGV 138
KL S+ LP L ++ V
Sbjct: 310 VKLSSV-TLPTALKTIQV 326
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 78 LPSSLCELISLQRLYLSGCSNL-RRIPESIINLSKLELLHLKNCSKLLSLPE 128
+PSSL L L LY+ G +NL IP +I L++L L++ + + ++P+
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119
>pdb|2XM6|A Chain A, Crystal Structure Of The Protein Corresponding To Locus
C5321 From Cft073 E.Coli Strain
Length = 490
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 184 DALQKIQQKATSWWMKLKEETDYKYKPSCGGIYFP-GSE-----IPKWFR 227
+ + K +++A SW+ K E+ D + + G IYF GSE +WFR
Sbjct: 306 EGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFR 355
>pdb|2PO5|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
pdb|2PO5|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
Length = 359
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 13 NLVNLKEIDLSYSRQLKKLPDLSQARNLEN-----LLLKACSSLVETH-SSIQYLSKLVT 66
++ L E+D+ YS+ L K + R E+ L KA + LV +H S + SK +T
Sbjct: 277 HIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLT 336
Query: 67 LDMRLCKN 74
L LC N
Sbjct: 337 LSCPLCVN 344
>pdb|2QD3|A Chain A, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD3|B Chain B, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD4|A Chain A, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD4|B Chain B, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD5|A Chain A, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|2QD5|B Chain B, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|3HCN|A Chain A, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCN|B Chain B, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCO|A Chain A, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCO|B Chain B, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCR|A Chain A, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
pdb|3HCR|B Chain B, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
Length = 359
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 13 NLVNLKEIDLSYSRQLKKLPDLSQARNLEN-----LLLKACSSLVETH-SSIQYLSKLVT 66
++ L E+D+ YS+ L K + R E+ L KA + LV +H S + SK +T
Sbjct: 277 HIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLT 336
Query: 67 LDMRLCKN 74
L LC N
Sbjct: 337 LSCPLCVN 344
>pdb|2HRE|A Chain A, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|B Chain B, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|C Chain C, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|D Chain D, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2QD1|A Chain A, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|B Chain B, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|C Chain C, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|D Chain D, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
Length = 359
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 13 NLVNLKEIDLSYSRQLKKLPDLSQARNLEN-----LLLKACSSLVETH-SSIQYLSKLVT 66
++ L E+D+ YS+ L K + R E+ L KA + LV +H S + SK +T
Sbjct: 277 HIKTLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLT 336
Query: 67 LDMRLCKN 74
L LC N
Sbjct: 337 LSCPLCVN 344
>pdb|1HRK|A Chain A, Crystal Structure Of Human Ferrochelatase
pdb|1HRK|B Chain B, Crystal Structure Of Human Ferrochelatase
pdb|2HRC|A Chain A, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
pdb|2HRC|B Chain B, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
Length = 359
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 13 NLVNLKEIDLSYSRQLKKLPDLSQARNLEN-----LLLKACSSLVETH-SSIQYLSKLVT 66
++ L E+D+ YS+ L K + R E+ L KA + LV +H S + SK +T
Sbjct: 277 HIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLT 336
Query: 67 LDMRLCKN 74
L LC N
Sbjct: 337 LSCPLCVN 344
>pdb|2QD2|A Chain A, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|2QD2|B Chain B, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|3HCP|A Chain A, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
pdb|3HCP|B Chain B, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
Length = 359
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 13 NLVNLKEIDLSYSRQLKKLPDLSQARNLEN-----LLLKACSSLVETH-SSIQYLSKLVT 66
++ L E+D+ YS+ L K + R E+ L KA + LV +H S + SK +T
Sbjct: 277 HIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLT 336
Query: 67 LDMRLCKN 74
L LC N
Sbjct: 337 LSCPLCVN 344
>pdb|4F4D|A Chain A, F337r Variant Of Human Ferrochelatase
pdb|4F4D|B Chain B, F337r Variant Of Human Ferrochelatase
Length = 359
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 13 NLVNLKEIDLSYSRQLKKLPDLSQARNLEN-----LLLKACSSLVETH-SSIQYLSKLVT 66
++ L E+D+ YS+ L K + R E+ L KA + LV +H S + SK +T
Sbjct: 277 HIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLT 336
Query: 67 LDMRLCKN 74
L LC N
Sbjct: 337 LSCPLCVN 344
>pdb|3AQI|A Chain A, H240a Variant Of Human Ferrochelatase
pdb|3AQI|B Chain B, H240a Variant Of Human Ferrochelatase
Length = 359
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 13 NLVNLKEIDLSYSRQLKKLPDLSQARNLEN-----LLLKACSSLVETH-SSIQYLSKLVT 66
++ L E+D+ YS+ L K + R E+ L KA + LV +H S + SK +T
Sbjct: 277 HIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLT 336
Query: 67 LDMRLCKN 74
L LC N
Sbjct: 337 LSCPLCVN 344
>pdb|2PNJ|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
pdb|2PNJ|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
Length = 359
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 13 NLVNLKEIDLSYSRQLKKLPDLSQARNLEN-----LLLKACSSLVETH-SSIQYLSKLVT 66
++ L E+D+ YS+ L K + R E+ L KA + LV +H S + SK +T
Sbjct: 277 HIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLT 336
Query: 67 LDMRLCKN 74
L LC N
Sbjct: 337 LSCPLCVN 344
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 59 QYLSKLVTLDMRLCKNLNRLP-SSLCELISLQRLYLSGCSNLRRIPESIINLS-KLELLH 116
Q L L LD+ + L LP +L L LQ LYL G + L+ +P ++ + KLE L
Sbjct: 97 QTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLS 154
Query: 117 LKNCSKLLSLPELPCNLFS 135
L N +L ELP L +
Sbjct: 155 LANN----NLTELPAGLLN 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,377,148
Number of Sequences: 62578
Number of extensions: 411316
Number of successful extensions: 1060
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1041
Number of HSP's gapped (non-prelim): 45
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)