Query 017788
Match_columns 366
No_of_seqs 496 out of 3501
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3.8E-31 8.2E-36 285.4 23.5 320 11-337 630-1100(1153)
2 PLN00113 leucine-rich repeat r 99.8 7.8E-20 1.7E-24 196.1 9.0 180 13-193 116-311 (968)
3 PLN00113 leucine-rich repeat r 99.8 1.2E-19 2.7E-24 194.5 8.2 193 2-194 116-336 (968)
4 KOG4194 Membrane glycoprotein 99.7 2.8E-18 6E-23 164.1 -2.6 183 11-195 241-444 (873)
5 KOG0617 Ras suppressor protein 99.7 1.4E-18 2.9E-23 142.9 -5.6 169 11-192 29-198 (264)
6 KOG0444 Cytoskeletal regulator 99.6 3.9E-16 8.5E-21 150.5 -0.6 178 11-194 74-295 (1255)
7 PLN03210 Resistant to P. syrin 99.5 1.3E-14 2.7E-19 157.6 9.9 122 14-138 610-732 (1153)
8 KOG4194 Membrane glycoprotein 99.5 1.9E-15 4.2E-20 144.8 0.9 173 15-195 173-370 (873)
9 KOG0617 Ras suppressor protein 99.4 8.1E-15 1.8E-19 120.8 -1.7 153 29-194 24-177 (264)
10 KOG0444 Cytoskeletal regulator 99.4 5.6E-15 1.2E-19 142.7 -4.2 153 12-177 219-373 (1255)
11 KOG0472 Leucine-rich repeat pr 99.3 7E-14 1.5E-18 128.9 -6.8 159 13-186 158-317 (565)
12 KOG4237 Extracellular matrix p 99.2 1.3E-13 2.8E-18 126.9 -5.8 56 139-194 271-326 (498)
13 PRK15387 E3 ubiquitin-protein 99.2 2.4E-11 5.3E-16 124.7 10.0 79 111-191 383-470 (788)
14 KOG0472 Leucine-rich repeat pr 99.2 5.5E-14 1.2E-18 129.6 -8.3 173 11-189 110-297 (565)
15 PRK15387 E3 ubiquitin-protein 99.2 7.5E-11 1.6E-15 121.1 10.1 30 16-48 223-252 (788)
16 PRK15370 E3 ubiquitin-protein 99.2 5.3E-11 1.1E-15 122.6 8.8 119 63-191 263-392 (754)
17 PLN03150 hypothetical protein; 99.1 9.8E-11 2.1E-15 119.5 8.4 89 40-128 420-508 (623)
18 PRK15370 E3 ubiquitin-protein 99.1 1.5E-10 3.3E-15 119.2 6.6 150 15-180 199-360 (754)
19 KOG4237 Extracellular matrix p 99.0 2.1E-11 4.5E-16 112.6 -1.5 172 16-195 68-303 (498)
20 cd00116 LRR_RI Leucine-rich re 99.0 7.1E-11 1.5E-15 110.7 1.3 110 13-122 79-205 (319)
21 PLN03150 hypothetical protein; 99.0 7.4E-10 1.6E-14 113.1 7.4 106 64-177 420-526 (623)
22 KOG0618 Serine/threonine phosp 99.0 3.2E-11 7E-16 121.6 -3.6 86 82-179 379-465 (1081)
23 cd00116 LRR_RI Leucine-rich re 98.9 9.8E-11 2.1E-15 109.7 -1.3 39 142-180 193-235 (319)
24 PF14580 LRR_9: Leucine-rich r 98.9 5.3E-10 1.1E-14 95.1 2.1 106 13-122 17-125 (175)
25 KOG0532 Leucine-rich repeat (L 98.9 3.6E-11 7.7E-16 115.6 -6.5 162 15-193 75-237 (722)
26 KOG0618 Serine/threonine phosp 98.8 2.9E-10 6.4E-15 114.8 -1.3 112 13-128 43-155 (1081)
27 KOG0532 Leucine-rich repeat (L 98.8 1.1E-10 2.5E-15 112.2 -4.7 151 14-180 97-248 (722)
28 PRK15386 type III secretion pr 98.8 1.9E-08 4E-13 95.8 9.9 152 11-179 48-219 (426)
29 PF14580 LRR_9: Leucine-rich r 98.8 9.8E-09 2.1E-13 87.3 5.2 116 29-156 10-127 (175)
30 COG4886 Leucine-rich repeat (L 98.7 3.6E-09 7.9E-14 102.4 2.2 155 12-180 113-269 (394)
31 COG4886 Leucine-rich repeat (L 98.7 5.4E-09 1.2E-13 101.2 2.4 156 16-186 141-297 (394)
32 KOG1259 Nischarin, modulator o 98.6 4.6E-09 9.9E-14 94.2 -0.2 130 15-156 284-413 (490)
33 PF13855 LRR_8: Leucine rich r 98.6 3.4E-08 7.4E-13 69.0 3.5 58 39-96 2-59 (61)
34 PF13855 LRR_8: Leucine rich r 98.6 4.4E-08 9.6E-13 68.4 4.0 59 15-73 1-60 (61)
35 KOG1259 Nischarin, modulator o 98.5 9.7E-09 2.1E-13 92.2 -1.2 134 37-184 283-417 (490)
36 KOG3207 Beta-tubulin folding c 98.5 1.4E-08 2.9E-13 95.4 -1.0 161 12-179 143-314 (505)
37 KOG4658 Apoptotic ATPase [Sign 98.5 4.8E-08 1E-12 102.5 2.7 105 14-119 544-651 (889)
38 KOG4658 Apoptotic ATPase [Sign 98.5 7.9E-08 1.7E-12 100.9 3.6 131 12-152 520-652 (889)
39 KOG3207 Beta-tubulin folding c 98.4 8.2E-08 1.8E-12 90.2 0.4 140 12-155 169-314 (505)
40 PRK15386 type III secretion pr 98.0 7.9E-06 1.7E-10 78.1 5.4 107 35-154 49-168 (426)
41 KOG0531 Protein phosphatase 1, 98.0 2.6E-06 5.7E-11 83.1 1.9 163 11-180 91-269 (414)
42 KOG1909 Ran GTPase-activating 98.0 1.8E-06 3.9E-11 79.2 0.3 129 11-141 88-251 (382)
43 KOG1859 Leucine-rich repeat pr 97.9 1.8E-06 4E-11 86.0 -0.3 105 62-180 164-268 (1096)
44 KOG4579 Leucine-rich repeat (L 97.8 1.7E-06 3.7E-11 69.3 -2.0 106 17-127 29-139 (177)
45 KOG1859 Leucine-rich repeat pr 97.7 5.4E-07 1.2E-11 89.6 -7.4 81 34-120 183-264 (1096)
46 PF12799 LRR_4: Leucine Rich r 97.7 5.5E-05 1.2E-09 48.8 3.9 33 63-96 2-34 (44)
47 KOG0531 Protein phosphatase 1, 97.7 4.9E-06 1.1E-10 81.2 -1.9 129 13-155 70-199 (414)
48 PF12799 LRR_4: Leucine Rich r 97.7 5.4E-05 1.2E-09 48.9 3.6 34 39-73 2-35 (44)
49 KOG2120 SCF ubiquitin ligase, 97.4 1.7E-05 3.8E-10 71.5 -1.5 155 11-174 206-371 (419)
50 KOG1644 U2-associated snRNP A' 97.3 0.00037 8E-09 59.7 4.5 102 16-119 43-149 (233)
51 KOG3665 ZYG-1-like serine/thre 97.2 0.0002 4.4E-09 73.8 2.7 107 13-121 146-261 (699)
52 KOG1909 Ran GTPase-activating 97.1 0.00015 3.2E-09 66.9 1.1 139 11-154 153-310 (382)
53 KOG3665 ZYG-1-like serine/thre 97.1 0.00034 7.4E-09 72.1 3.1 106 15-122 122-232 (699)
54 KOG4579 Leucine-rich repeat (L 97.1 3.9E-05 8.4E-10 61.7 -3.1 57 62-120 53-110 (177)
55 KOG2739 Leucine-rich acidic nu 97.0 0.0005 1.1E-08 61.1 2.9 87 34-123 39-129 (260)
56 KOG2982 Uncharacterized conser 97.0 0.0001 2.3E-09 66.6 -1.7 145 36-180 69-238 (418)
57 KOG2120 SCF ubiquitin ligase, 96.8 4.8E-05 1E-09 68.8 -4.8 86 39-124 186-274 (419)
58 COG5238 RNA1 Ran GTPase-activa 96.5 0.0058 1.3E-07 54.9 5.9 111 11-123 88-227 (388)
59 KOG1644 U2-associated snRNP A' 96.5 0.0034 7.3E-08 54.0 4.1 84 11-96 60-150 (233)
60 KOG2123 Uncharacterized conser 96.4 0.0002 4.3E-09 64.3 -3.9 100 13-116 17-123 (388)
61 KOG2739 Leucine-rich acidic nu 96.3 0.0032 7E-08 56.1 3.1 64 57-122 38-103 (260)
62 COG5238 RNA1 Ran GTPase-activa 96.2 0.00071 1.5E-08 60.6 -1.3 163 12-180 27-228 (388)
63 KOG2982 Uncharacterized conser 95.8 0.0041 8.9E-08 56.6 1.4 35 138-172 245-285 (418)
64 PF13306 LRR_5: Leucine rich r 95.7 0.02 4.2E-07 45.7 5.1 105 8-119 5-112 (129)
65 PF00560 LRR_1: Leucine Rich R 94.8 0.016 3.5E-07 31.2 1.3 18 64-82 2-19 (22)
66 KOG2123 Uncharacterized conser 94.5 0.0024 5.2E-08 57.5 -3.9 64 84-156 39-102 (388)
67 PF13306 LRR_5: Leucine rich r 93.8 0.16 3.5E-06 40.3 5.8 95 11-112 31-128 (129)
68 PF00560 LRR_1: Leucine Rich R 93.8 0.03 6.5E-07 30.1 0.9 19 40-59 2-20 (22)
69 KOG0473 Leucine-rich repeat pr 91.9 0.003 6.6E-08 55.4 -7.2 85 34-121 38-122 (326)
70 KOG1947 Leucine rich repeat pr 91.3 0.079 1.7E-06 52.2 0.9 111 13-123 186-308 (482)
71 PF13504 LRR_7: Leucine rich r 91.1 0.14 3.1E-06 25.5 1.3 10 64-73 3-12 (17)
72 KOG4341 F-box protein containi 90.9 0.05 1.1E-06 51.8 -0.9 112 14-125 267-387 (483)
73 KOG3864 Uncharacterized conser 89.9 0.081 1.7E-06 45.7 -0.4 80 40-119 103-185 (221)
74 KOG4341 F-box protein containi 89.8 0.26 5.6E-06 47.2 2.8 134 13-153 292-437 (483)
75 KOG0473 Leucine-rich repeat pr 88.3 0.0065 1.4E-07 53.4 -8.2 86 11-98 38-123 (326)
76 KOG1947 Leucine rich repeat pr 86.8 0.19 4.1E-06 49.5 -0.2 87 36-122 186-281 (482)
77 smart00370 LRR Leucine-rich re 83.9 0.85 1.8E-05 25.2 1.7 11 63-73 3-13 (26)
78 smart00369 LRR_TYP Leucine-ric 83.9 0.85 1.8E-05 25.2 1.7 11 63-73 3-13 (26)
79 PF13516 LRR_6: Leucine Rich r 75.1 0.71 1.5E-05 25.0 -0.5 11 63-73 3-13 (24)
80 smart00365 LRR_SD22 Leucine-ri 67.0 4.9 0.00011 22.5 1.7 14 14-27 1-14 (26)
81 smart00364 LRR_BAC Leucine-ric 63.8 4.1 9E-05 22.8 1.0 17 63-80 3-19 (26)
82 KOG3864 Uncharacterized conser 57.8 5.5 0.00012 34.6 1.3 33 64-96 103-135 (221)
83 smart00368 LRR_RI Leucine rich 57.4 8.4 0.00018 21.8 1.6 13 15-27 2-14 (28)
84 smart00367 LRR_CC Leucine-rich 53.2 9.8 0.00021 20.9 1.4 12 110-121 2-13 (26)
85 KOG4308 LRR-containing protein 50.7 1 2.2E-05 44.8 -4.9 136 16-155 145-303 (478)
86 KOG4308 LRR-containing protein 49.7 0.37 8.1E-06 47.8 -8.2 165 11-180 111-304 (478)
87 KOG3763 mRNA export factor TAP 44.2 16 0.00036 36.5 2.3 66 36-101 216-285 (585)
88 KOG3763 mRNA export factor TAP 33.3 21 0.00045 35.8 1.2 64 13-77 216-285 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.98 E-value=3.8e-31 Score=285.40 Aligned_cols=320 Identities=30% Similarity=0.413 Sum_probs=213.6
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
++.+++|+.|+|++|...+.+|+++.+++|+.|+|++|..+..+|.+++.+++|+.|++++|..++.+|..+ ++++|+.
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~ 708 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR 708 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCE
Confidence 456788888888887777788888888888888888888888888888888888888888877677666654 4444444
Q ss_pred EEeeC--------------------------------------------------------------------------C
Q 017788 91 LYLSG--------------------------------------------------------------------------C 96 (366)
Q Consensus 91 L~Ls~--------------------------------------------------------------------------n 96 (366)
|++++ |
T Consensus 709 L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 709 LNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred EeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 44444 4
Q ss_pred CCCCcchHHHhccCCCcEEcccccccccccCCC--CCCccEEecCCCcC----------CccccCcccccccCCCCCCce
Q 017788 97 SNLRRIPESIINLSKLELLHLKNCSKLLSLPEL--PCNLFSVGVRRCTS----------LEALSSFSFLFSAMSPHNDQY 164 (366)
Q Consensus 97 ~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l--~~~L~~L~l~~~~~----------L~~L~l~~n~l~~~~~~~~~~ 164 (366)
.....+|.+++++++|+.|++++|..++.+|.. +.+|+.|++++|.. |+.|+++.|.+.. +|..+..
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~-iP~si~~ 867 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEE-VPWWIEK 867 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCcc-ChHHHhc
Confidence 344456777888888999999988888888864 46788888888744 5567778887776 6777777
Q ss_pred EEeCCcccCCh-hhhhcchHHHHHHHHhhhh-----------hhhhh--------------------------hhcc--c
Q 017788 165 FNLSDCLKLDQ-NELKGIAEDALQKIQQKAT-----------SWWMK--------------------------LKEE--T 204 (366)
Q Consensus 165 l~~l~~l~L~~-n~l~~~~~~~~~~l~~L~~-----------~~~~~--------------------------~~~~--~ 204 (366)
+..|..+++++ +.+.. +|..+.+++.|.. ..|.. ++.. .
T Consensus 868 l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~ 946 (1153)
T PLN03210 868 FSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQE 946 (1153)
T ss_pred CCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCch
Confidence 77777777776 33333 2222222222211 11100 0000 0
Q ss_pred C-ccCCCCceeEecCCCCCCCceeeccCCceEE-EecCCCCccCCccceeEEEEEeee----------eEEEeeccceee
Q 017788 205 D-YKYKPSCGGIYFPGSEIPKWFRFSSMGSSIE-FKPQSDWINNEYLGIAFCAVLRCR----------IRFKIPSHDWYV 272 (366)
Q Consensus 205 ~-l~~~~~~~~~~~pg~~iP~W~~~~~~g~~v~-i~lp~~w~~~~~~gf~~c~v~~~~----------~~~~~~~~~~~~ 272 (366)
. +........+.+||.++|+||.|++.|++++ |.+|+.|....|.||++|+|++|. +.+.|....-+.
T Consensus 947 a~l~~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~ 1026 (1153)
T PLN03210 947 ALLQQQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLG 1026 (1153)
T ss_pred hhhcccccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCC
Confidence 0 0011113457889999999999999999998 999999998899999999999754 223333211111
Q ss_pred cccCccCCceEEEEEeee----------c---CCCCCCCCCceeEEEEEEEecCCCCccCcceEEEeeeEEEeecCCC
Q 017788 273 RTIDYVESDHLFMGYYFF----------H---GDKGDSRQDFEKALFKIYFYNHTGRAMRCCGVKKCGIRLLTAGDDF 337 (366)
Q Consensus 273 ~~~~~~~sdh~~~~~~~~----------~---~~~~~~~~~~~~~~f~f~~~~~~~~~~~~~~vk~CGv~liy~~~~~ 337 (366)
........+|+|+.|... . +.....++.+++++++|.+.+.. ..++||+||||++|+.+..
T Consensus 1027 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~----~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1027 NHFDSPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKN----SQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred CccccCCCceeEeeeccccceEEecccccccccccchhccCCceeeEEEEEecCC----CCeEEEeeeEEEeccCCCc
Confidence 111234566777666542 0 00112356788999999877642 2479999999999976543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=7.8e-20 Score=196.09 Aligned_cols=180 Identities=22% Similarity=0.209 Sum_probs=92.0
Q ss_pred CCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788 13 NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY 92 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~ 92 (366)
++++|++|+|++|.+.+.+|. +.+++|++|+|++|...+.+|..++.+++|++|+|++|.+.+.+|..++++++|++|+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred cCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 445555555555555444442 2344555555555544444555555555555555555554445555555555555555
Q ss_pred eeCCCCCCcchHHHhccCCCcEEcccccccccccCCCC---CCccEE-------------ecCCCcCCccccCccccccc
Q 017788 93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELP---CNLFSV-------------GVRRCTSLEALSSFSFLFSA 156 (366)
Q Consensus 93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~---~~L~~L-------------~l~~~~~L~~L~l~~n~l~~ 156 (366)
+++|.+.+.+|..++++++|++|++++|.+.+.+|... .+|+.| .+.++++|+.|+++.|.+.+
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 55555544555555555555555555554444444311 112222 23344555556666555555
Q ss_pred CCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 157 MSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 157 ~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
..|..+..+..++.+++++|.+.+.+|..+.++++|+
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 311 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311 (968)
T ss_pred cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCc
Confidence 5555555555555566665555555555555544443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=1.2e-19 Score=194.53 Aligned_cols=193 Identities=22% Similarity=0.219 Sum_probs=156.4
Q ss_pred CCCccceeccC-----------CCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEec
Q 017788 2 ERTNLRFLILK-----------NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDM 69 (366)
Q Consensus 2 ~~~~L~~l~l~-----------~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L 69 (366)
.+++|+.|+++ .+++|++|+|++|.+.+.+|. ++++++|++|+|++|...+.+|..++++++|++|+|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 35667777642 577888999998888777886 888888999999888877788888888888888888
Q ss_pred ccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCC---CCccEEecC-------
Q 017788 70 RLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELP---CNLFSVGVR------- 139 (366)
Q Consensus 70 ~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~---~~L~~L~l~------- 139 (366)
++|.+.+.+|..++++++|++|+|++|.+.+.+|..++++++|++|++++|...+.+|... .+|+.|.+.
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence 8888888888888888888888888888888888888888888888888887766666433 455665543
Q ss_pred ------CCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhhh
Q 017788 140 ------RCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKAT 194 (366)
Q Consensus 140 ------~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~~ 194 (366)
++++|+.|+++.|.+.+.+|..+..+..++.++++.|.+.+..|..+..+++|+.
T Consensus 276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 3567888999999988888888888889999999999998888888887777764
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.67 E-value=2.8e-18 Score=164.07 Aligned_cols=183 Identities=20% Similarity=0.132 Sum_probs=115.0
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
|++|++|+.|.|..|.+...-.+ |..+.++++|+|+.|+....-..++.+|++|+.|+|++|.+...-++++...++|+
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK 320 (873)
T ss_pred hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence 55666666666666655333222 55666666666666544443344555566666666666655555555555556666
Q ss_pred EEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCC----CCCCccEEe----------------cCCCcCCccccC
Q 017788 90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPE----LPCNLFSVG----------------VRRCTSLEALSS 149 (366)
Q Consensus 90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~----l~~~L~~L~----------------l~~~~~L~~L~l 149 (366)
.|+|+.|.+...-+.++..|..|++|.|++|. ++.+.+ ..++|++|+ +.++++|+.|.+
T Consensus 321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred eEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence 66666655554444445555555555555442 222221 112333332 456889999999
Q ss_pred cccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhhhh
Q 017788 150 FSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATS 195 (366)
Q Consensus 150 ~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~~~ 195 (366)
.+|++..+....|.++..|+.|+|.+|.+..+.+++|..+ .|..+
T Consensus 400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~L 444 (873)
T KOG4194|consen 400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKEL 444 (873)
T ss_pred cCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhh
Confidence 9999999888899999999999999999999999999877 55543
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.4e-18 Score=142.91 Aligned_cols=169 Identities=24% Similarity=0.288 Sum_probs=146.2
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
+-++.+++.|.||+|+++...|.+..+.+|+.|++.+| .+.++|.++..+++|+.|+++-|+ +..+|..|+.++.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhh
Confidence 44677888999999999777778999999999999987 567899999999999999999888 7889999999999999
Q ss_pred EEeeCCCCCC-cchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC
Q 017788 91 LYLSGCSNLR-RIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD 169 (366)
Q Consensus 91 L~Ls~n~~~~-~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~ 169 (366)
|||..|.+.. .+|..|..|+.|+.|++++|. .+.+|. +++.+++|+.|.+..|.+-. +|..++.+..++
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~--------dvg~lt~lqil~lrdndll~-lpkeig~lt~lr 176 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPP--------DVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLR 176 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCC-cccCCh--------hhhhhcceeEEeeccCchhh-CcHHHHHHHHHH
Confidence 9999987654 589999999999999999984 578888 88999999999999998877 888999999999
Q ss_pred cccCChhhhhcchHHHHHHHHhh
Q 017788 170 CLKLDQNELKGIAEDALQKIQQK 192 (366)
Q Consensus 170 ~l~L~~n~l~~~~~~~~~~l~~L 192 (366)
.+.+.+|+++ .+|..++++..+
T Consensus 177 elhiqgnrl~-vlppel~~l~l~ 198 (264)
T KOG0617|consen 177 ELHIQGNRLT-VLPPELANLDLV 198 (264)
T ss_pred HHhcccceee-ecChhhhhhhhh
Confidence 9999999987 445555555433
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.55 E-value=3.9e-16 Score=150.55 Aligned_cols=178 Identities=22% Similarity=0.288 Sum_probs=108.8
Q ss_pred cCCCCCCCEEeccCCCCC--CCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcC-CCCC
Q 017788 11 LKNLVNLKEIDLSYSRQL--KKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLC-ELIS 87 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~--~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~-~l~~ 87 (366)
++.|+.||.+++..|++. |..+++..+..|..|+|++| .+.++|..+..-+++-.|+|++|+ +..+|..++ +|+-
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTD 151 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHh
Confidence 566777777777777653 22334777777788888777 456777777777777777777776 556666543 7777
Q ss_pred CcEEEeeCCCCCCcchHHHhccCCCcEEcccccccc----cccCCCCCCccEEe--------------cCCCc-------
Q 017788 88 LQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKL----LSLPELPCNLFSVG--------------VRRCT------- 142 (366)
Q Consensus 88 L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l----~~lp~l~~~L~~L~--------------l~~~~------- 142 (366)
|-.||||+|. +..+|+.+..|..|++|+|++|++. ..+|.. .+|+.|. +.++.
T Consensus 152 LLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsm-tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 152 LLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSM-TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred Hhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccc-hhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 7777777764 5567777777777777777777542 233321 1222221 12233
Q ss_pred ----------------CCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhhh
Q 017788 143 ----------------SLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKAT 194 (366)
Q Consensus 143 ----------------~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~~ 194 (366)
+|+.|+++.|.++. +.-..+....++.|+|+.|+++ .+|.++.+++.|+.
T Consensus 230 S~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 230 SENNLPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTK 295 (1255)
T ss_pred cccCCCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHH
Confidence 44444444444443 2222233345555666666665 56888888888873
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.54 E-value=1.3e-14 Score=157.59 Aligned_cols=122 Identities=32% Similarity=0.465 Sum_probs=82.8
Q ss_pred CCCCCEEeccCCCCCCCCC-CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788 14 LVNLKEIDLSYSRQLKKLP-DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY 92 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~ 92 (366)
..+|++|+|++|++. .++ .+..+++|+.|+|++|..++.+| .+..+++|++|+|++|..+..+|..++.+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 356777777777653 344 36677777777777766666666 366677777777777776777777777777777777
Q ss_pred eeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEec
Q 017788 93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGV 138 (366)
Q Consensus 93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l 138 (366)
+++|..++.+|..+ ++++|+.|++++|..++.+|..+.+|+.|.+
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L 732 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDL 732 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeec
Confidence 77777676777655 6677777777777666666655555555544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.52 E-value=1.9e-15 Score=144.80 Aligned_cols=173 Identities=18% Similarity=0.132 Sum_probs=99.7
Q ss_pred CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccc-------------------
Q 017788 15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKN------------------- 74 (366)
Q Consensus 15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~------------------- 74 (366)
.++++|+|++|+++..-.+ |.++.+|.+|.|+.|++....+.+|.+|++|+.|+|..|.+
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 3455555555555332222 55555555555555544333333444455555555554442
Q ss_pred -----cCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccC
Q 017788 75 -----LNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSS 149 (366)
Q Consensus 75 -----~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l 149 (366)
..--...|..+.++++|+|+.|++...--.++.+|++|+.|+++.|.+...-+. ....|++|+.|++
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d--------~WsftqkL~~LdL 324 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID--------SWSFTQKLKELDL 324 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc--------hhhhcccceeEec
Confidence 221122344555666666666655444445566667777777777655444443 4556777777777
Q ss_pred cccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhhhh
Q 017788 150 FSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATS 195 (366)
Q Consensus 150 ~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~~~ 195 (366)
++|+++...+..+..|..|+.|+|+.|.++.+...+|..+++|..+
T Consensus 325 s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 325 SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL 370 (873)
T ss_pred cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence 7777777667777777777777777777777666666666666543
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=8.1e-15 Score=120.77 Aligned_cols=153 Identities=24% Similarity=0.257 Sum_probs=134.3
Q ss_pred CCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhc
Q 017788 29 KKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIIN 108 (366)
Q Consensus 29 ~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~ 108 (366)
.++|.+..+.++..|.|++| .+..+|+.|+.+.+|+.|++.+|+ ++.+|.+++.+++|+.|+++-|. +..+|.+|+.
T Consensus 24 ~~~~gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs 100 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGS 100 (264)
T ss_pred hhcccccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCC
Confidence 45677778899999999998 556789999999999999999888 88999999999999999999875 5589999999
Q ss_pred cCCCcEEccccccccc-ccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHH
Q 017788 109 LSKLELLHLKNCSKLL-SLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQ 187 (366)
Q Consensus 109 L~~L~~L~L~~n~~l~-~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~ 187 (366)
++.|+.||+..|+..+ .+|. ++..++.|+.|.++.|.+.- +|...+.++.++.+.+.+|.+- ..|..++
T Consensus 101 ~p~levldltynnl~e~~lpg--------nff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll-~lpkeig 170 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPG--------NFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLL-SLPKEIG 170 (264)
T ss_pred CchhhhhhccccccccccCCc--------chhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchh-hCcHHHH
Confidence 9999999999986643 5777 78888999999999999987 8888999999999999999887 5678888
Q ss_pred HHHhhhh
Q 017788 188 KIQQKAT 194 (366)
Q Consensus 188 ~l~~L~~ 194 (366)
.+.+|+.
T Consensus 171 ~lt~lre 177 (264)
T KOG0617|consen 171 DLTRLRE 177 (264)
T ss_pred HHHHHHH
Confidence 8888863
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.42 E-value=5.6e-15 Score=142.66 Aligned_cols=153 Identities=30% Similarity=0.429 Sum_probs=115.6
Q ss_pred CCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 12 KNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
..+.+|+.+|||.|.+ ..+|+ +.++++|+.|+|++|. ++++.-.++...+|++|+|+.|+ +..+|+.+++|+.|+.
T Consensus 219 d~l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTK 295 (1255)
T ss_pred hhhhhhhhccccccCC-CcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHH
Confidence 3566777777777766 45565 7777778888888774 34555556666777788888777 6778888888888888
Q ss_pred EEeeCCCCC-CcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC
Q 017788 91 LYLSGCSNL-RRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD 169 (366)
Q Consensus 91 L~Ls~n~~~-~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~ 169 (366)
|.+.+|.+. .-+|++|++|.+|+.+..++| .+.-.|+ .+..|..|+.|.++.|++-. +|..+.-|.-++
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPE--------glcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPE--------GLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLK 365 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCch--------hhhhhHHHHHhcccccceee-chhhhhhcCCcc
Confidence 888777553 347888888888888888776 5677777 78888999999999998877 788777778888
Q ss_pred cccCChhh
Q 017788 170 CLKLDQNE 177 (366)
Q Consensus 170 ~l~L~~n~ 177 (366)
.|+|..|+
T Consensus 366 vLDlreNp 373 (1255)
T KOG0444|consen 366 VLDLRENP 373 (1255)
T ss_pred eeeccCCc
Confidence 88887764
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.26 E-value=7e-14 Score=128.94 Aligned_cols=159 Identities=23% Similarity=0.248 Sum_probs=117.5
Q ss_pred CCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788 13 NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY 92 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~ 92 (366)
.+.+|..|++.+|++....|+.-.++.|+.|+...| .++.+|+.++.+.+|..|+|..|+ +..+| .|.++..|.+|+
T Consensus 158 ~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh 234 (565)
T KOG0472|consen 158 NLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNK-IRFLP-EFPGCSLLKELH 234 (565)
T ss_pred HHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcc-cccCC-CCCccHHHHHHH
Confidence 444555566666665444444333666666666665 566677777777777777777777 56666 677777777777
Q ss_pred eeCCCCCCcchHHHh-ccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcc
Q 017788 93 LSGCSNLRRIPESII-NLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCL 171 (366)
Q Consensus 93 Ls~n~~~~~lp~~i~-~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l 171 (366)
++.|. ...+|+.+. +|.+|..||+++| .+++.|. .+.-+++|+.|++++|.+++ +|..++++ .++.+
T Consensus 235 ~g~N~-i~~lpae~~~~L~~l~vLDLRdN-klke~Pd--------e~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 235 VGENQ-IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPD--------EICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFL 302 (565)
T ss_pred hcccH-HHhhHHHHhcccccceeeecccc-ccccCch--------HHHHhhhhhhhcccCCcccc-CCcccccc-eeeeh
Confidence 77664 446777766 8999999999998 5688887 66677899999999999999 88899999 89999
Q ss_pred cCChhhhhcchHHHH
Q 017788 172 KLDQNELKGIAEDAL 186 (366)
Q Consensus 172 ~L~~n~l~~~~~~~~ 186 (366)
.+.+|++..+-.+.+
T Consensus 303 ~leGNPlrTiRr~ii 317 (565)
T KOG0472|consen 303 ALEGNPLRTIRREII 317 (565)
T ss_pred hhcCCchHHHHHHHH
Confidence 999999987655444
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=1.3e-13 Score=126.91 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=40.7
Q ss_pred CCCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhhh
Q 017788 139 RRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKAT 194 (366)
Q Consensus 139 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~~ 194 (366)
.++++|+.|++++|+++.+-+.+|..+..++.+.|..|++..+...+|..+..|..
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~t 326 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKT 326 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccccee
Confidence 34567777888888877777777777777777777777777777777766666653
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.24 E-value=2.4e-11 Score=124.66 Aligned_cols=79 Identities=25% Similarity=0.282 Sum_probs=52.9
Q ss_pred CCcEEcccccccccccCCCCCCccEEecCCC---------cCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcc
Q 017788 111 KLELLHLKNCSKLLSLPELPCNLFSVGVRRC---------TSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGI 181 (366)
Q Consensus 111 ~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~---------~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~ 181 (366)
+|+.|++++|. +..+|..+++|+.|++++. .+|+.|+++.|.++. +|..+..+..+..++|++|++++.
T Consensus 383 ~L~~LdLs~N~-Lt~LP~l~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 383 GLKELIVSGNR-LTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred ccceEEecCCc-ccCCCCcccCCCEEEccCCcCCCCCcchhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCch
Confidence 56666666664 3456666666666665542 245667777777775 677777788888888888888877
Q ss_pred hHHHHHHHHh
Q 017788 182 AEDALQKIQQ 191 (366)
Q Consensus 182 ~~~~~~~l~~ 191 (366)
.+..+..+.+
T Consensus 461 ~~~~L~~l~s 470 (788)
T PRK15387 461 TLQALREITS 470 (788)
T ss_pred HHHHHHHHhc
Confidence 7776644433
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.24 E-value=5.5e-14 Score=129.60 Aligned_cols=173 Identities=24% Similarity=0.290 Sum_probs=115.1
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
+..+.+|+.|+.++|.+....++++.+..|+.|+..+| .+..+|+.++++.+|..|++.+|+ +..+|+..-+++.|++
T Consensus 110 i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 110 IGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKH 187 (565)
T ss_pred HhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHh
Confidence 34566677777777776544445777777777777666 445667777777888888888777 4444444445888888
Q ss_pred EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCC--CccEEec-------------CCCcCCccccCcccccc
Q 017788 91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPC--NLFSVGV-------------RRCTSLEALSSFSFLFS 155 (366)
Q Consensus 91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~--~L~~L~l-------------~~~~~L~~L~l~~n~l~ 155 (366)
||...| .++.+|+.++.|.+|..|++.+| .+..+|++++ .|+++.+ .++.++..|++..|++.
T Consensus 188 ld~~~N-~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 188 LDCNSN-LLETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred cccchh-hhhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc
Confidence 888776 56788888888999999999888 4577786552 2222222 23455666667777766
Q ss_pred cCCCCCCceEEeCCcccCChhhhhcchHHHHHHH
Q 017788 156 AMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKI 189 (366)
Q Consensus 156 ~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l 189 (366)
. .|..+.-+..++.+|+++|.+++ .|..++++
T Consensus 266 e-~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl 297 (565)
T KOG0472|consen 266 E-VPDEICLLRSLERLDLSNNDISS-LPYSLGNL 297 (565)
T ss_pred c-CchHHHHhhhhhhhcccCCcccc-CCcccccc
Confidence 6 66666666667777777776664 34445544
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.18 E-value=7.5e-11 Score=121.09 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=14.3
Q ss_pred CCCEEeccCCCCCCCCCCCCCCCCCcEEecccC
Q 017788 16 NLKEIDLSYSRQLKKLPDLSQARNLENLLLKAC 48 (366)
Q Consensus 16 ~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n 48 (366)
+|+.|++++|++. .+|.+ +++|++|++++|
T Consensus 223 ~L~~L~L~~N~Lt-~LP~l--p~~Lk~LdLs~N 252 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPAL--PPELRTLEVSGN 252 (788)
T ss_pred CCCEEEccCCcCC-CCCCC--CCCCcEEEecCC
Confidence 4555555555442 34432 345555555554
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.18 E-value=5.3e-11 Score=122.60 Aligned_cols=119 Identities=24% Similarity=0.264 Sum_probs=59.2
Q ss_pred CCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCC-CCCCccEEecCCC
Q 017788 63 KLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPE-LPCNLFSVGVRRC 141 (366)
Q Consensus 63 ~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~-l~~~L~~L~l~~~ 141 (366)
+|+.|++++|+ +..+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.+ ..+|. .+.+|+.|.+.++
T Consensus 263 ~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~L-t~LP~~l~~sL~~L~Ls~N 335 (754)
T PRK15370 263 ALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSL-TALPETLPPGLKTLEAGEN 335 (754)
T ss_pred CCCEEECcCCc-cCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcc-ccCCccccccceeccccCC
Confidence 45555555444 233444332 34555555555333 3333221 2445555555432 23332 3345555555443
Q ss_pred ----------cCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHh
Q 017788 142 ----------TSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ 191 (366)
Q Consensus 142 ----------~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~ 191 (366)
++|+.|+++.|.++. +|..+ ...|..|++++|.++.+.+.....++.
T Consensus 336 ~Lt~LP~~l~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~LP~~l~~sL~~ 392 (754)
T PRK15370 336 ALTSLPASLPPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNLPENLPAALQI 392 (754)
T ss_pred ccccCChhhcCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCCCHhHHHHHHH
Confidence 367777777777665 44433 245677778878777655444333333
No 17
>PLN03150 hypothetical protein; Provisional
Probab=99.14 E-value=9.8e-11 Score=119.47 Aligned_cols=89 Identities=27% Similarity=0.241 Sum_probs=64.9
Q ss_pred CcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccc
Q 017788 40 LENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN 119 (366)
Q Consensus 40 L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~ 119 (366)
++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|+.+++|++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56677777766667777777777777777777776667777777777777777777777777777777777777777777
Q ss_pred cccccccCC
Q 017788 120 CSKLLSLPE 128 (366)
Q Consensus 120 n~~l~~lp~ 128 (366)
|.+.+.+|.
T Consensus 500 N~l~g~iP~ 508 (623)
T PLN03150 500 NSLSGRVPA 508 (623)
T ss_pred CcccccCCh
Confidence 776666665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.08 E-value=1.5e-10 Score=119.25 Aligned_cols=150 Identities=19% Similarity=0.301 Sum_probs=96.3
Q ss_pred CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEe
Q 017788 15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL 93 (366)
Q Consensus 15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~L 93 (366)
++|+.|+|++|++. .+|. +. ++|++|++++|. +..+|..+. .+|+.|+|++|. +..+|..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEEC
Confidence 36888888888775 5554 43 478888888875 446666543 478888888887 457777653 57888888
Q ss_pred eCCCCCCcchHHHhccCCCcEEcccccccccccCC-CCCCccEEecCC----------CcCCccccCcccccccCCCCCC
Q 017788 94 SGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPE-LPCNLFSVGVRR----------CTSLEALSSFSFLFSAMSPHND 162 (366)
Q Consensus 94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~-l~~~L~~L~l~~----------~~~L~~L~l~~n~l~~~~~~~~ 162 (366)
++|.+. .+|..+. .+|+.|++++|++ ..+|. ++.+|+.|++.+ .++|+.|.++.|.++. +|..+
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~L-t~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l 344 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSI-RTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASL 344 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCcc-ccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhh
Confidence 887655 5776554 4788888888854 45554 333444444332 2356666666666655 44333
Q ss_pred ceEEeCCcccCChhhhhc
Q 017788 163 QYFNLSDCLKLDQNELKG 180 (366)
Q Consensus 163 ~~l~~l~~l~L~~n~l~~ 180 (366)
. ..|+.|++++|.++.
T Consensus 345 ~--~sL~~L~Ls~N~L~~ 360 (754)
T PRK15370 345 P--PELQVLDVSKNQITV 360 (754)
T ss_pred c--CcccEEECCCCCCCc
Confidence 2 456666666666653
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.03 E-value=2.1e-11 Score=112.57 Aligned_cols=172 Identities=18% Similarity=0.164 Sum_probs=116.6
Q ss_pred CCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccch-hcCCCCCCcEEEe
Q 017788 16 NLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPS-SLCELISLQRLYL 93 (366)
Q Consensus 16 ~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~-~i~~l~~L~~L~L 93 (366)
.-..++|..|.+....|. |+.+++||+|+|+.|.+...-|.+|.++..|..|-+.+|+.++.+|. .|++|.+|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456788888888433333 88888888899888877777788888888888887777444667765 5668888888888
Q ss_pred eCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccc--------------------
Q 017788 94 SGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFL-------------------- 153 (366)
Q Consensus 94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~-------------------- 153 (366)
.-|.+.....+.+..|++|..|.+.+|. .+.++.- .+.++.+++++.+..|.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~-------tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie 219 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKG-------TFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE 219 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchh-hhhhccc-------cccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence 7777766677777888888888877763 3444431 11111222222211111
Q ss_pred -----------------------------------------cccC-CCCCCceEEeCCcccCChhhhhcchHHHHHHHHh
Q 017788 154 -----------------------------------------FSAM-SPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ 191 (366)
Q Consensus 154 -----------------------------------------l~~~-~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~ 191 (366)
.... +...|..|..|+.++|++|.++++.+.+|.....
T Consensus 220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence 0011 1123667888999999999999999999888877
Q ss_pred hhhh
Q 017788 192 KATS 195 (366)
Q Consensus 192 L~~~ 195 (366)
++..
T Consensus 300 l~eL 303 (498)
T KOG4237|consen 300 LQEL 303 (498)
T ss_pred hhhh
Confidence 7644
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=7.1e-11 Score=110.66 Aligned_cols=110 Identities=21% Similarity=0.123 Sum_probs=56.5
Q ss_pred CCCCCCEEeccCCCCCCCCCC-CCCC---CCCcEEecccCCCcc----ccCccccCC-cCCcEEecccccccC----ccc
Q 017788 13 NLVNLKEIDLSYSRQLKKLPD-LSQA---RNLENLLLKACSSLV----ETHSSIQYL-SKLVTLDMRLCKNLN----RLP 79 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~-l~~l---~~L~~L~L~~n~~~~----~~p~~i~~L-~~L~~L~L~~n~~~~----~lp 79 (366)
++++|+.|++++|.+.+..+. +..+ ++|+.|++++|.... .+...+..+ ++|+.|++++|.+.+ .++
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 455666666666665433332 3222 336666666664431 122334444 566666666666442 233
Q ss_pred hhcCCCCCCcEEEeeCCCCCC----cchHHHhccCCCcEEccccccc
Q 017788 80 SSLCELISLQRLYLSGCSNLR----RIPESIINLSKLELLHLKNCSK 122 (366)
Q Consensus 80 ~~i~~l~~L~~L~Ls~n~~~~----~lp~~i~~L~~L~~L~L~~n~~ 122 (366)
..+..+++|++|++++|.+.+ .++..+..+++|+.|++++|.+
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 344455566666666665442 1233344455666666666643
No 21
>PLN03150 hypothetical protein; Provisional
Probab=98.99 E-value=7.4e-10 Score=113.09 Aligned_cols=106 Identities=25% Similarity=0.215 Sum_probs=57.4
Q ss_pred CcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcC
Q 017788 64 LVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTS 143 (366)
Q Consensus 64 L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~ 143 (366)
++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|. .+.++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~--------~l~~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE--------SLGQLTS 491 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch--------HHhcCCC
Confidence 45555555555555555555555555555555555555555555555555555555555555555 4455555
Q ss_pred CccccCcccccccCCCCCCceE-EeCCcccCChhh
Q 017788 144 LEALSSFSFLFSAMSPHNDQYF-NLSDCLKLDQNE 177 (366)
Q Consensus 144 L~~L~l~~n~l~~~~~~~~~~l-~~l~~l~L~~n~ 177 (366)
|+.|+++.|.+++.+|..+..+ ..+..+++.+|.
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 5555555555555555544332 223334444443
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.96 E-value=3.2e-11 Score=121.64 Aligned_cols=86 Identities=28% Similarity=0.302 Sum_probs=42.4
Q ss_pred cCCCCCCcEEEeeCCCCCCcchH-HHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCC
Q 017788 82 LCELISLQRLYLSGCSNLRRIPE-SIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPH 160 (366)
Q Consensus 82 i~~l~~L~~L~Ls~n~~~~~lp~-~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~ 160 (366)
+.++++|++|+|++|.+ ..+|+ .+.++..|++|+|++| .++.+|. .+..|..|++|...+|++.. .|
T Consensus 379 l~~~~hLKVLhLsyNrL-~~fpas~~~kle~LeeL~LSGN-kL~~Lp~--------tva~~~~L~tL~ahsN~l~~-fP- 446 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRL-NSFPASKLRKLEELEELNLSGN-KLTTLPD--------TVANLGRLHTLRAHSNQLLS-FP- 446 (1081)
T ss_pred hccccceeeeeeccccc-ccCCHHHHhchHHhHHHhcccc-hhhhhhH--------HHHhhhhhHHHhhcCCceee-ch-
Confidence 34555566666666542 23443 3455556666666665 3455554 33344444444444444443 33
Q ss_pred CCceEEeCCcccCChhhhh
Q 017788 161 NDQYFNLSDCLKLDQNELK 179 (366)
Q Consensus 161 ~~~~l~~l~~l~L~~n~l~ 179 (366)
.+..+..++++|++.|.++
T Consensus 447 e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hhhhcCcceEEecccchhh
Confidence 3444444455555544443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.93 E-value=9.8e-11 Score=109.73 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=19.0
Q ss_pred cCCccccCcccccccC----CCCCCceEEeCCcccCChhhhhc
Q 017788 142 TSLEALSSFSFLFSAM----SPHNDQYFNLSDCLKLDQNELKG 180 (366)
Q Consensus 142 ~~L~~L~l~~n~l~~~----~~~~~~~l~~l~~l~L~~n~l~~ 180 (366)
++|+.|+++.|.+... +...+..+..++.+++++|.+.+
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 3555555555544321 11223344556666666665554
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.90 E-value=5.3e-10 Score=95.06 Aligned_cols=106 Identities=27% Similarity=0.314 Sum_probs=25.0
Q ss_pred CCCCCCEEeccCCCCCCCCCCCC-CCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhc-CCCCCCcE
Q 017788 13 NLVNLKEIDLSYSRQLKKLPDLS-QARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSL-CELISLQR 90 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~l~-~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i-~~l~~L~~ 90 (366)
+...+++|+|++|.+ ..+..++ .+.+|+.|+|++|.+ ..++ .+..+++|++|++++|.+ ..+++.+ ..+++|++
T Consensus 17 n~~~~~~L~L~~n~I-~~Ie~L~~~l~~L~~L~Ls~N~I-~~l~-~l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQI-STIENLGATLDKLEVLDLSNNQI-TKLE-GLPGLPRLKTLDLSNNRI-SSISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccc-ccccchhhhhcCCCEEECCCCCC-cccc-CccChhhhhhcccCCCCC-CccccchHHhCCcCCE
Confidence 444556666666655 2334444 355566666665533 2332 344555566666665552 3333322 23555666
Q ss_pred EEeeCCCCCCc-chHHHhccCCCcEEccccccc
Q 017788 91 LYLSGCSNLRR-IPESIINLSKLELLHLKNCSK 122 (366)
Q Consensus 91 L~Ls~n~~~~~-lp~~i~~L~~L~~L~L~~n~~ 122 (366)
|++++|.+... --..+..+++|+.|++.+|+.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 66655543221 012344555555555555543
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=3.6e-11 Score=115.64 Aligned_cols=162 Identities=27% Similarity=0.317 Sum_probs=103.7
Q ss_pred CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEe
Q 017788 15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL 93 (366)
Q Consensus 15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~L 93 (366)
.--...||+.|++ ..+|. +..+-.|+.|.|..| .+..+|..++++..|.+|||+.|+ +..+|..++.|+ |+.|.+
T Consensus 75 tdt~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRF-SELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhcccccc-ccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEE
Confidence 3345567788877 45564 777777777777776 445677788888888888888877 667777776665 777777
Q ss_pred eCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccC
Q 017788 94 SGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKL 173 (366)
Q Consensus 94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L 173 (366)
++| .++.+|+.|+.+..|..||.+.|. +..+|. .+.++.+|+.|.+..|++.. +|..+..|.. ..||+
T Consensus 151 sNN-kl~~lp~~ig~~~tl~~ld~s~ne-i~slps--------ql~~l~slr~l~vrRn~l~~-lp~El~~LpL-i~lDf 218 (722)
T KOG0532|consen 151 SNN-KLTSLPEEIGLLPTLAHLDVSKNE-IQSLPS--------QLGYLTSLRDLNVRRNHLED-LPEELCSLPL-IRLDF 218 (722)
T ss_pred ecC-ccccCCcccccchhHHHhhhhhhh-hhhchH--------HhhhHHHHHHHHHhhhhhhh-CCHHHhCCce-eeeec
Confidence 766 455777777777777788877774 455555 44555555555555555555 3443333332 23555
Q ss_pred ChhhhhcchHHHHHHHHhhh
Q 017788 174 DQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 174 ~~n~l~~~~~~~~~~l~~L~ 193 (366)
+.|++. .+|-.|.+|+.|+
T Consensus 219 ScNkis-~iPv~fr~m~~Lq 237 (722)
T KOG0532|consen 219 SCNKIS-YLPVDFRKMRHLQ 237 (722)
T ss_pred ccCcee-ecchhhhhhhhhe
Confidence 555554 3455555555554
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.85 E-value=2.9e-10 Score=114.84 Aligned_cols=112 Identities=30% Similarity=0.341 Sum_probs=93.0
Q ss_pred CCCCCCEEeccCCCCCCCCC-CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788 13 NLVNLKEIDLSYSRQLKKLP-DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL 91 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L 91 (366)
+.-+|+.|||++|.+ +..| .+..+.+|+.|+++.| .+..+|.++.++.+|++|+|.+|. +..+|.++..+++|+.|
T Consensus 43 ~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYL 119 (1081)
T ss_pred heeeeEEeecccccc-ccCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhccccc
Confidence 344589999998887 5666 4888999999999987 677888899999999999999766 88899999999999999
Q ss_pred EeeCCCCCCcchHHHhccCCCcEEcccccccccccCC
Q 017788 92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPE 128 (366)
Q Consensus 92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~ 128 (366)
++++|. .+.+|..+..++.+..+..++|..++.++.
T Consensus 120 dlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~ 155 (1081)
T KOG0618|consen 120 DLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQ 155 (1081)
T ss_pred ccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhcc
Confidence 999985 557888888888888888888855555554
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.83 E-value=1.1e-10 Score=112.25 Aligned_cols=151 Identities=23% Similarity=0.256 Sum_probs=103.1
Q ss_pred CCCCCEEeccCCCCCCCCC-CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788 14 LVNLKEIDLSYSRQLKKLP-DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY 92 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~ 92 (366)
+..|+.+.|..|.+ ..+| .+.++..|.+|+|+.|+ +..+|..+..|+ |+.|-+++|+ ++.+|..++.+..|..||
T Consensus 97 f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 97 FVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhh
Confidence 44566667777766 3444 37777777777777763 345666666665 7777777666 677777777777777777
Q ss_pred eeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCccc
Q 017788 93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLK 172 (366)
Q Consensus 93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~ 172 (366)
.+.|. +..+|..++.+.+|+.|.++.|. +..+|+ .+. +-.|..|+++.|++.. +|-.|.++..|+.+.
T Consensus 173 ~s~ne-i~slpsql~~l~slr~l~vrRn~-l~~lp~--------El~-~LpLi~lDfScNkis~-iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 173 VSKNE-IQSLPSQLGYLTSLRDLNVRRNH-LEDLPE--------ELC-SLPLIRLDFSCNKISY-LPVDFRKMRHLQVLQ 240 (722)
T ss_pred hhhhh-hhhchHHhhhHHHHHHHHHhhhh-hhhCCH--------HHh-CCceeeeecccCceee-cchhhhhhhhheeee
Confidence 77774 34677777777777777777763 445554 333 3346777777777777 777777777777777
Q ss_pred CChhhhhc
Q 017788 173 LDQNELKG 180 (366)
Q Consensus 173 L~~n~l~~ 180 (366)
|++|++..
T Consensus 241 LenNPLqS 248 (722)
T KOG0532|consen 241 LENNPLQS 248 (722)
T ss_pred eccCCCCC
Confidence 77777764
No 28
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.82 E-value=1.9e-08 Score=95.76 Aligned_cols=152 Identities=21% Similarity=0.357 Sum_probs=96.7
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
+..+.+++.|++++|.+ ..+|.+ ..+|+.|.+++|..+..+|+.+ ..+|+.|++++|..+..+|.. |+.
T Consensus 48 ~~~~~~l~~L~Is~c~L-~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDI-ESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCC-cccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cce
Confidence 44578999999999965 666743 2469999999998888888755 368999999999667777754 666
Q ss_pred EEeeCCC--CCCcchHHHhccC------------------CCcEEcccccccccccCCCCCCccEEecCCCcCCccccCc
Q 017788 91 LYLSGCS--NLRRIPESIINLS------------------KLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSF 150 (366)
Q Consensus 91 L~Ls~n~--~~~~lp~~i~~L~------------------~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~ 150 (366)
|+++++. ..+.+|.++..|. +|++|++++|......+.+|.+|+.|.++.+. ...+.+.
T Consensus 117 L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~-~~sLeI~ 195 (426)
T PRK15386 117 LEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQ-KTTWNIS 195 (426)
T ss_pred EEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEecccc-cccccCc
Confidence 6676543 2556777665442 56666666665433222355556555554321 1222222
Q ss_pred ccccccCCCCCCceEEeCCcccCChhhhh
Q 017788 151 SFLFSAMSPHNDQYFNLSDCLKLDQNELK 179 (366)
Q Consensus 151 ~n~l~~~~~~~~~~l~~l~~l~L~~n~l~ 179 (366)
. ..+|..+ .+.+.+|+.++.+.++
T Consensus 196 ~----~sLP~nl-~L~f~n~lkL~~~~f~ 219 (426)
T PRK15386 196 F----EGFPDGL-DIDLQNSVLLSPDVFK 219 (426)
T ss_pred c----ccccccc-EechhhhcccCHHHhh
Confidence 1 1255555 6777777777665554
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=9.8e-09 Score=87.31 Aligned_cols=116 Identities=25% Similarity=0.245 Sum_probs=40.1
Q ss_pred CCCCCCCCCCCCcEEecccCCCccccCcccc-CCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHH-
Q 017788 29 KKLPDLSQARNLENLLLKACSSLVETHSSIQ-YLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESI- 106 (366)
Q Consensus 29 ~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~-~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i- 106 (366)
...|.+.+...++.|+|++|.+. .+ +.++ .+.+|+.|+|++|. +..++ .+..++.|++|++++|.+. .+++.+
T Consensus 10 ~~~~~~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~ 84 (175)
T PF14580_consen 10 EQIAQYNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNRIS-SISEGLD 84 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHH
T ss_pred ccccccccccccccccccccccc-cc-cchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCCCC-ccccchH
Confidence 55666777778999999999554 33 3455 58899999999998 55554 5778999999999999766 455555
Q ss_pred hccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788 107 INLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA 156 (366)
Q Consensus 107 ~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~ 156 (366)
..+++|++|++++|++ ..+..+- .+..|++|+.|++..|.++.
T Consensus 85 ~~lp~L~~L~L~~N~I-~~l~~l~------~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKI-SDLNELE------PLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp HH-TT--EEE-TTS----SCCCCG------GGGG-TT--EEE-TT-GGGG
T ss_pred HhCCcCCEEECcCCcC-CChHHhH------HHHcCCCcceeeccCCcccc
Confidence 4689999999999854 3333211 45567778888877777653
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.74 E-value=3.6e-09 Score=102.45 Aligned_cols=155 Identities=27% Similarity=0.357 Sum_probs=94.6
Q ss_pred CCCCCCCEEeccCCCCCCCCCC-CCCCC-CCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 12 KNLVNLKEIDLSYSRQLKKLPD-LSQAR-NLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~~~~p~-l~~l~-~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
..++.++.|++.+|.+. .+|. ...+. +|+.|++++|. +..+|..++.+++|+.|++++|+ +..+|...+.+++|+
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence 34566788888877774 4444 55553 78888888773 45556677788888888888877 666776666778888
Q ss_pred EEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC
Q 017788 90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD 169 (366)
Q Consensus 90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~ 169 (366)
.|++++|. ...+|..+..+..|+.|.+++|.....+. .+.++..+..+.+..|++.. .+..++.+..++
T Consensus 190 ~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~---------~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~ 258 (394)
T COG4886 190 NLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLS---------SLSNLKNLSGLELSNNKLED-LPESIGNLSNLE 258 (394)
T ss_pred heeccCCc-cccCchhhhhhhhhhhhhhcCCcceecch---------hhhhcccccccccCCceeee-ccchhccccccc
Confidence 88888874 44677766666778888887774322222 23333444444444444333 233334444444
Q ss_pred cccCChhhhhc
Q 017788 170 CLKLDQNELKG 180 (366)
Q Consensus 170 ~l~L~~n~l~~ 180 (366)
.+++++|.++.
T Consensus 259 ~L~~s~n~i~~ 269 (394)
T COG4886 259 TLDLSNNQISS 269 (394)
T ss_pred eeccccccccc
Confidence 44444444443
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.71 E-value=5.4e-09 Score=101.22 Aligned_cols=156 Identities=31% Similarity=0.313 Sum_probs=129.8
Q ss_pred CCCEEeccCCCCCCCCC-CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEee
Q 017788 16 NLKEIDLSYSRQLKKLP-DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLS 94 (366)
Q Consensus 16 ~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls 94 (366)
+|+.|+++.|.+ ..+| .+..+++|+.|+++.| .+..+|...+.++.|+.|++++|+ +..+|..+..+..|++|.++
T Consensus 141 nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccch-hhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhc
Confidence 899999999998 5665 5899999999999998 456777777789999999999998 78888887777789999999
Q ss_pred CCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccCC
Q 017788 95 GCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLD 174 (366)
Q Consensus 95 ~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~ 174 (366)
+|. ....+..+.++.++..+.+.+|+. ..++. .+..+++++.|+++.|.++. ++. ++.+..+..++++
T Consensus 218 ~N~-~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~--------~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s 285 (394)
T COG4886 218 NNS-IIELLSSLSNLKNLSGLELSNNKL-EDLPE--------SIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLS 285 (394)
T ss_pred CCc-ceecchhhhhcccccccccCCcee-eeccc--------hhccccccceeccccccccc-ccc-ccccCccCEEecc
Confidence 985 336777889999999999888754 34344 56677889999999999988 443 8889999999999
Q ss_pred hhhhhcchHHHH
Q 017788 175 QNELKGIAEDAL 186 (366)
Q Consensus 175 ~n~l~~~~~~~~ 186 (366)
.|.+....+...
T Consensus 286 ~n~~~~~~~~~~ 297 (394)
T COG4886 286 GNSLSNALPLIA 297 (394)
T ss_pred Cccccccchhhh
Confidence 999887766554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=4.6e-09 Score=94.23 Aligned_cols=130 Identities=20% Similarity=0.133 Sum_probs=63.7
Q ss_pred CCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEee
Q 017788 15 VNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLS 94 (366)
Q Consensus 15 ~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls 94 (366)
..|+++|||+|.+...-.+..-+|.++.|+++.|.+.. + .+++.|++|+.|||++|. +..+-.+-.++-+.++|.|+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehh
Confidence 34556666666552222224445566666666654332 2 235555666666666555 33333333355556666666
Q ss_pred CCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788 95 GCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA 156 (366)
Q Consensus 95 ~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~ 156 (366)
+|.+. .+ +++++|-+|..||+++|++ +.+.+- -.+++++.|+.+.+.+|.+.+
T Consensus 361 ~N~iE-~L-SGL~KLYSLvnLDl~~N~I-e~ldeV------~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 361 QNKIE-TL-SGLRKLYSLVNLDLSSNQI-EELDEV------NHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhHh-hh-hhhHhhhhheeccccccch-hhHHHh------cccccccHHHHHhhcCCCccc
Confidence 55321 22 3455555666666666532 222110 034455555666665555544
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.61 E-value=3.4e-08 Score=68.99 Aligned_cols=58 Identities=29% Similarity=0.238 Sum_probs=25.8
Q ss_pred CCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCC
Q 017788 39 NLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC 96 (366)
Q Consensus 39 ~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n 96 (366)
+|++|++++|.+...-+..+.++++|++|++++|.+...-|..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444332222234444555555555544433333334445555555555554
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.60 E-value=4.4e-08 Score=68.41 Aligned_cols=59 Identities=29% Similarity=0.301 Sum_probs=40.9
Q ss_pred CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEeccccc
Q 017788 15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCK 73 (366)
Q Consensus 15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~ 73 (366)
++|++|++++|++....++ |.++++|++|++++|.+....|..+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4677777777766433333 7777777777777776655555677777777777777775
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=9.7e-09 Score=92.16 Aligned_cols=134 Identities=24% Similarity=0.232 Sum_probs=90.2
Q ss_pred CCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEc
Q 017788 37 ARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLH 116 (366)
Q Consensus 37 l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~ 116 (366)
.+.|+.|+|++| .+..+.+++.-+++++.|+++.|.+.. +. .+..+++|+.||||+|.+. .+-.+=.+|-+.++|.
T Consensus 283 Wq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhcccccc-chhhhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 345677777776 455666777777777777777777433 22 2556777777777776433 3444445667777777
Q ss_pred ccccccccccCCCCCCccEEecCCCcCCccccCcccccccCC-CCCCceEEeCCcccCChhhhhcchHH
Q 017788 117 LKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMS-PHNDQYFNLSDCLKLDQNELKGIAED 184 (366)
Q Consensus 117 L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~l~~l~L~~n~l~~~~~~ 184 (366)
|++| .+..+. .++.+-+|..|+++.|++.... -..++.++.++.+.|.+|++.++...
T Consensus 359 La~N-~iE~LS---------GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 359 LAQN-KIETLS---------GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hhhh-hHhhhh---------hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 7776 334443 3556778889999999876531 23567888888899999998865443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.4e-08 Score=95.35 Aligned_cols=161 Identities=24% Similarity=0.221 Sum_probs=88.3
Q ss_pred CCCCCCCEEeccCCCCCCCCC--C-CCCCCCCcEEecccCCCccccCccc-cCCcCCcEEecccccccC-ccchhcCCCC
Q 017788 12 KNLVNLKEIDLSYSRQLKKLP--D-LSQARNLENLLLKACSSLVETHSSI-QYLSKLVTLDMRLCKNLN-RLPSSLCELI 86 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~~~~p--~-l~~l~~L~~L~L~~n~~~~~~p~~i-~~L~~L~~L~L~~n~~~~-~lp~~i~~l~ 86 (366)
..|++++.||||.|-+...-| . ...+++|+.|+|+.|.+.-...+.. ..+++|+.|.|+.|.+.. .+-.....++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 457777777777776543333 2 4567777777777775443222211 245677777777776542 2222333567
Q ss_pred CCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccC-CCCC----
Q 017788 87 SLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAM-SPHN---- 161 (366)
Q Consensus 87 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~-~~~~---- 161 (366)
+|+.|+|.+|......-....-++.|+.|||++|+++ ..+..+ ..+.++.|+.|+++.+.+..+ .|+.
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~------~~~~l~~L~~Lnls~tgi~si~~~d~~s~~ 295 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGY------KVGTLPGLNQLNLSSTGIASIAEPDVESLD 295 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccc------ccccccchhhhhccccCcchhcCCCccchh
Confidence 7777777777433222233344567777777777543 223211 234455566666655554432 1111
Q ss_pred -CceEEeCCcccCChhhhh
Q 017788 162 -DQYFNLSDCLKLDQNELK 179 (366)
Q Consensus 162 -~~~l~~l~~l~L~~n~l~ 179 (366)
...+..++.|++..|++.
T Consensus 296 kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhcccccceeeecccCccc
Confidence 234556666677766654
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.50 E-value=4.8e-08 Score=102.53 Aligned_cols=105 Identities=30% Similarity=0.319 Sum_probs=62.6
Q ss_pred CCCCCEEeccCCCC-CCCCCC--CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 14 LVNLKEIDLSYSRQ-LKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 14 l~~L~~L~Ls~n~~-~~~~p~--l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
.+.|++|-+..|.. ...++. |..++.|++|||++|...+.+|++|+.|-+|++|+|+++. +..+|.++.+|+.|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhhe
Confidence 44566666665541 233332 5566666666666666666666666666666666666655 4466666666666666
Q ss_pred EEeeCCCCCCcchHHHhccCCCcEEcccc
Q 017788 91 LYLSGCSNLRRIPESIINLSKLELLHLKN 119 (366)
Q Consensus 91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~ 119 (366)
|++..+.....+|..+..|++|++|.+..
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eccccccccccccchhhhcccccEEEeec
Confidence 66666555555555555566666666544
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.48 E-value=7.9e-08 Score=100.92 Aligned_cols=131 Identities=29% Similarity=0.371 Sum_probs=102.1
Q ss_pred CCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCC-ccccC-ccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 12 KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSS-LVETH-SSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~-~~~~p-~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
.+....+.+.+-+|.+ ..++.-...+.|++|-+.+|.. +..++ ..|..++.|+.|||++|...+.+|+.|+.|-+|+
T Consensus 520 ~~~~~~rr~s~~~~~~-~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKI-EHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred cchhheeEEEEeccch-hhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 3445667777777765 4555544556899999999862 34444 3478899999999999999999999999999999
Q ss_pred EEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccc
Q 017788 90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSF 152 (366)
Q Consensus 90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n 152 (366)
+|++++.. ...+|.++++|.+|.+|++..+..+..+|. .+..+.+|+.|.+...
T Consensus 599 yL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~--------i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 599 YLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPG--------ILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccCCC-ccccchHHHHHHhhheeccccccccccccc--------hhhhcccccEEEeecc
Confidence 99999975 448999999999999999999877777765 3444666777666443
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=8.2e-08 Score=90.20 Aligned_cols=140 Identities=20% Similarity=0.162 Sum_probs=92.5
Q ss_pred CCCCCCCEEeccCCCCCCCCCC--CCCCCCCcEEecccCCCccc-cCccccCCcCCcEEecccccccCccchhcCCCCCC
Q 017788 12 KNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVE-THSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISL 88 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~n~~~~~-~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L 88 (366)
..|++|+.|+|+.|++.--..+ -..+++|+.|.|++|.+... +......+++|+.|+|..|.....--.....+..|
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence 4799999999999988544332 34678999999999966432 22234567899999999886444333344467889
Q ss_pred cEEEeeCCCCCCcch--HHHhccCCCcEEcccccccccccCCCCC-CccEEecCCCcCCccccCcccccc
Q 017788 89 QRLYLSGCSNLRRIP--ESIINLSKLELLHLKNCSKLLSLPELPC-NLFSVGVRRCTSLEALSSFSFLFS 155 (366)
Q Consensus 89 ~~L~Ls~n~~~~~lp--~~i~~L~~L~~L~L~~n~~l~~lp~l~~-~L~~L~l~~~~~L~~L~l~~n~l~ 155 (366)
+.|||++|.+. .++ ..++.++.|+.|+++.|.+ .++..... ++. .....++|+.|.+..|++.
T Consensus 249 ~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi-~si~~~d~~s~~--kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 249 QELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGI-ASIAEPDVESLD--KTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhccccCCccc-ccccccccccccchhhhhccccCc-chhcCCCccchh--hhcccccceeeecccCccc
Confidence 99999998765 344 4567788888888888743 33221110 000 1134567777777777763
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.00 E-value=7.9e-06 Score=78.07 Aligned_cols=107 Identities=25% Similarity=0.425 Sum_probs=77.2
Q ss_pred CCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcE
Q 017788 35 SQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLEL 114 (366)
Q Consensus 35 ~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~ 114 (366)
..+.+++.|++++| .+..+|. -..+|+.|++++|..+..+|..+ ..+|+.|++++|..+..+|. +|+.
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 35789999999998 6667772 23469999999998888888765 46899999999976667775 4666
Q ss_pred EcccccccccccCCCCCCccEEecCCC-------------cCCccccCccccc
Q 017788 115 LHLKNCSKLLSLPELPCNLFSVGVRRC-------------TSLEALSSFSFLF 154 (366)
Q Consensus 115 L~L~~n~~l~~lp~l~~~L~~L~l~~~-------------~~L~~L~l~~n~l 154 (366)
|++..+ ....++.+|.+|+.|.+.+. ++|+.|.++.+..
T Consensus 117 L~L~~n-~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 117 LEIKGS-ATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN 168 (426)
T ss_pred EEeCCC-CCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCc
Confidence 667654 34456777778887776321 3566666665543
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.98 E-value=2.6e-06 Score=83.12 Aligned_cols=163 Identities=23% Similarity=0.139 Sum_probs=101.9
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
+..+++|+.|++..|++ ..+.. +..+++|++|++++|.+.. +. .+..++.|+.|++++|.+ ..+ ..+..+++|+
T Consensus 91 l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~I~~-i~-~l~~l~~L~~L~l~~N~i-~~~-~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNKITK-LE-GLSTLTLLKELNLSGNLI-SDI-SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccch-hhcccchhhhhcchheecccccccc-cc-chhhccchhhheeccCcc-hhc-cCCccchhhh
Confidence 56778888888888887 45555 7888888888888885443 32 466777788888888884 333 2344588888
Q ss_pred EEEeeCCCCCCcch-HHHhccCCCcEEcccccccccccCCC----------C-CCccEEe-cCCCcC--CccccCccccc
Q 017788 90 RLYLSGCSNLRRIP-ESIINLSKLELLHLKNCSKLLSLPEL----------P-CNLFSVG-VRRCTS--LEALSSFSFLF 154 (366)
Q Consensus 90 ~L~Ls~n~~~~~lp-~~i~~L~~L~~L~L~~n~~l~~lp~l----------~-~~L~~L~-l~~~~~--L~~L~l~~n~l 154 (366)
.+++++|.+...-+ . ...+.+|+.+.+.+|.+...-..- . ..+..+. +..+.. |+.+.++.|.+
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRI 244 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcc
Confidence 88888886554333 1 467788888888887543221100 0 0000000 111122 66777777776
Q ss_pred ccCCCCCCceEEeCCcccCChhhhhc
Q 017788 155 SAMSPHNDQYFNLSDCLKLDQNELKG 180 (366)
Q Consensus 155 ~~~~~~~~~~l~~l~~l~L~~n~l~~ 180 (366)
.. .+..+..+..+..+++.+|.+..
T Consensus 245 ~~-~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 245 SR-SPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred cc-ccccccccccccccchhhccccc
Confidence 65 32445556666777777776654
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.96 E-value=1.8e-06 Score=79.21 Aligned_cols=129 Identities=24% Similarity=0.287 Sum_probs=87.9
Q ss_pred cCCCCCCCEEeccCCCCCCCCC----C-CCCCCCCcEEecccCCCccc-------------cCccccCCcCCcEEecccc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLP----D-LSQARNLENLLLKACSSLVE-------------THSSIQYLSKLVTLDMRLC 72 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p----~-l~~l~~L~~L~L~~n~~~~~-------------~p~~i~~L~~L~~L~L~~n 72 (366)
+..+++|++||||.|.+...-+ + ++++..|+.|.|.+|.+... ....++.-++|+++...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 4567799999999998753332 3 57789999999998844321 1123445578999999988
Q ss_pred cccCc-----cchhcCCCCCCcEEEeeCCCCCCc----chHHHhccCCCcEEccccccccc--------ccCCCCCCccE
Q 017788 73 KNLNR-----LPSSLCELISLQRLYLSGCSNLRR----IPESIINLSKLELLHLKNCSKLL--------SLPELPCNLFS 135 (366)
Q Consensus 73 ~~~~~-----lp~~i~~l~~L~~L~Ls~n~~~~~----lp~~i~~L~~L~~L~L~~n~~l~--------~lp~l~~~L~~ 135 (366)
+ ++. +...+...+.|+.+.++.|.+... +-..+..+++|+.|||.+|.+.. .+|.++ +|+.
T Consensus 168 r-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~E 245 (382)
T KOG1909|consen 168 R-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRE 245 (382)
T ss_pred c-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hhee
Confidence 8 433 334566678899999988865422 33567789999999999986643 333333 5666
Q ss_pred EecCCC
Q 017788 136 VGVRRC 141 (366)
Q Consensus 136 L~l~~~ 141 (366)
++++.|
T Consensus 246 l~l~dc 251 (382)
T KOG1909|consen 246 LNLGDC 251 (382)
T ss_pred eccccc
Confidence 665554
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.93 E-value=1.8e-06 Score=85.97 Aligned_cols=105 Identities=25% Similarity=0.258 Sum_probs=79.4
Q ss_pred cCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCC
Q 017788 62 SKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRC 141 (366)
Q Consensus 62 ~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~ 141 (366)
.+|.+.+.+.|. +..+..++.-++.|+.|+|++|.+... +.+..|++|++|||+.| .+..+|.+ ...+|
T Consensus 164 n~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN-~L~~vp~l-------~~~gc 232 (1096)
T KOG1859|consen 164 NKLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYN-CLRHVPQL-------SMVGC 232 (1096)
T ss_pred hhHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccc-hhcccccc-------chhhh
Confidence 356666777666 666677777789999999999976543 37889999999999998 56777763 55677
Q ss_pred cCCccccCcccccccCCCCCCceEEeCCcccCChhhhhc
Q 017788 142 TSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG 180 (366)
Q Consensus 142 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~ 180 (366)
+ |+.|.+++|.++.. ..+.+|..|..||+++|-+.+
T Consensus 233 ~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 233 K-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred h-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhc
Confidence 6 88888888877652 335577888888888888776
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.83 E-value=1.7e-06 Score=69.35 Aligned_cols=106 Identities=21% Similarity=0.261 Sum_probs=81.7
Q ss_pred CCEEeccCCCCCCCCCC----CCCCCCCcEEecccCCCccccCcccc-CCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788 17 LKEIDLSYSRQLKKLPD----LSQARNLENLLLKACSSLVETHSSIQ-YLSKLVTLDMRLCKNLNRLPSSLCELISLQRL 91 (366)
Q Consensus 17 L~~L~Ls~n~~~~~~p~----l~~l~~L~~L~L~~n~~~~~~p~~i~-~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L 91 (366)
+..+||+.|.+ ..+++ +.+...|...+|++|. ...+|+.+. ..+.+++|||++|+ +..+|..+..++.|+.|
T Consensus 29 ~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchh-hHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhc
Confidence 45678888876 44543 5677788888999984 456676665 44589999999888 77889999999999999
Q ss_pred EeeCCCCCCcchHHHhccCCCcEEcccccccccccC
Q 017788 92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP 127 (366)
Q Consensus 92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp 127 (366)
+++.|++. ..|..|..|.+|..|+..+|.+ ..+|
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~-~eid 139 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENAR-AEID 139 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCcc-ccCc
Confidence 99998654 6888888899999999888743 3444
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.74 E-value=5.4e-07 Score=89.63 Aligned_cols=81 Identities=27% Similarity=0.251 Sum_probs=37.0
Q ss_pred CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchh-cCCCCCCcEEEeeCCCCCCcchHHHhccCCC
Q 017788 34 LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS-LCELISLQRLYLSGCSNLRRIPESIINLSKL 112 (366)
Q Consensus 34 l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~-i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L 112 (366)
+.-++.|+.|+|++|+.. .+. .+..|++|++|||+.|. +..+|.- ...+. |+.|.+++|... .+ .+|.+|.+|
T Consensus 183 Lqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL 256 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLKSL 256 (1096)
T ss_pred HHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccHHH-hh-hhHHhhhhh
Confidence 444455555555555332 222 44555555555555555 3333321 11222 555555554322 12 234555555
Q ss_pred cEEccccc
Q 017788 113 ELLHLKNC 120 (366)
Q Consensus 113 ~~L~L~~n 120 (366)
+.||++.|
T Consensus 257 ~~LDlsyN 264 (1096)
T KOG1859|consen 257 YGLDLSYN 264 (1096)
T ss_pred hccchhHh
Confidence 55555554
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=5.5e-05 Score=48.85 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=13.9
Q ss_pred CCcEEecccccccCccchhcCCCCCCcEEEeeCC
Q 017788 63 KLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC 96 (366)
Q Consensus 63 ~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n 96 (366)
+|++|++++|+ +..+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCC
Confidence 34444444444 2234444444444444444444
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.68 E-value=4.9e-06 Score=81.22 Aligned_cols=129 Identities=27% Similarity=0.259 Sum_probs=76.0
Q ss_pred CCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788 13 NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY 92 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~ 92 (366)
.+..++.+++..|.+......+..+++|+.|++.+|.+ ..+...+..+++|++|++++|.+...- .+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccch-hhcccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 35566666677776643233477777788888877744 344333667777888888877743322 344666677777
Q ss_pred eeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEe-cCCCcCCccccCcccccc
Q 017788 93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVG-VRRCTSLEALSSFSFLFS 155 (366)
Q Consensus 93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~-l~~~~~L~~L~l~~n~l~ 155 (366)
+++|.+.. + ..+..+.+|+.+++++|.+. .+.. . +..+.+++.+.+..|.+.
T Consensus 147 l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~-~ie~--------~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 147 LSGNLISD-I-SGLESLKSLKLLDLSYNRIV-DIEN--------DELSELISLEELDLGGNSIR 199 (414)
T ss_pred eccCcchh-c-cCCccchhhhcccCCcchhh-hhhh--------hhhhhccchHHHhccCCchh
Confidence 77775542 2 23444677777777777443 3322 1 234455555555555443
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.67 E-value=5.4e-05 Score=48.88 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=15.7
Q ss_pred CCcEEecccCCCccccCccccCCcCCcEEeccccc
Q 017788 39 NLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCK 73 (366)
Q Consensus 39 ~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~ 73 (366)
+|++|++++|.+ ..+|+.+++|++|++|++++|+
T Consensus 2 ~L~~L~l~~N~i-~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQI-TDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCC-cccCchHhCCCCCCEEEecCCC
Confidence 445555555422 2344445555555555555554
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=1.7e-05 Score=71.52 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=91.6
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccC--ccccCCcCCcEEecccccccCccchh-cC-CC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETH--SSIQYLSKLVTLDMRLCKNLNRLPSS-LC-EL 85 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p--~~i~~L~~L~~L~L~~n~~~~~lp~~-i~-~l 85 (366)
++.+.+|+.|.|.++++...+-. +.+-.+|+.|+|++|...++.. --+.+++.|..|||+.|......-.. +. --
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 45688888888888887655554 7888899999999987665432 23567888999999988755432111 11 12
Q ss_pred CCCcEEEeeCCCCC---CcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCC
Q 017788 86 ISLQRLYLSGCSNL---RRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHND 162 (366)
Q Consensus 86 ~~L~~L~Ls~n~~~---~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~ 162 (366)
++|..|+|+|+... ..+..-..++++|.+|||++|..++. .... .+...+.|++|+++.+. +++|..+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~-----~~~kf~~L~~lSlsRCY--~i~p~~~ 356 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQ-----EFFKFNYLQHLSLSRCY--DIIPETL 356 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHH-----HHHhcchheeeehhhhc--CCChHHe
Confidence 46777778776321 11212234677888888888755432 1100 23344556666554432 3344332
Q ss_pred ---ceEEeCCcccCC
Q 017788 163 ---QYFNLSDCLKLD 174 (366)
Q Consensus 163 ---~~l~~l~~l~L~ 174 (366)
.....+.+|+..
T Consensus 357 ~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 357 LELNSKPSLVYLDVF 371 (419)
T ss_pred eeeccCcceEEEEec
Confidence 233344555554
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.25 E-value=0.00037 Score=59.72 Aligned_cols=102 Identities=23% Similarity=0.228 Sum_probs=55.4
Q ss_pred CCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccch--hcCCCCCCcEEEe
Q 017788 16 NLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPS--SLCELISLQRLYL 93 (366)
Q Consensus 16 ~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~--~i~~l~~L~~L~L 93 (366)
+...+||++|.+ ..++.|..++.|.+|.|..|.+...-|.--..+++|..|.|.+|.+ ..+-+ .+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl-~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDL-RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccch-hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch-hhhhhcchhccCCccceeee
Confidence 455667776665 4556666677777777776654433333333456677777776653 22211 2335566666666
Q ss_pred eCCCCCCcch---HHHhccCCCcEEcccc
Q 017788 94 SGCSNLRRIP---ESIINLSKLELLHLKN 119 (366)
Q Consensus 94 s~n~~~~~lp---~~i~~L~~L~~L~L~~ 119 (366)
-+|.....-- -.+..+++|+.||..+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 6664332100 1244556666666543
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.19 E-value=0.0002 Score=73.76 Aligned_cols=107 Identities=21% Similarity=0.170 Sum_probs=56.3
Q ss_pred CCCCCCEEeccCCCCCCC-CCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccC-ccchhcCCCCCCc
Q 017788 13 NLVNLKEIDLSYSRQLKK-LPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN-RLPSSLCELISLQ 89 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~-~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~-~lp~~i~~l~~L~ 89 (366)
.||+|+.|.+++-.+... ... ..++++|+.||++++. +..+ ..+++|++|+.|.+++=.+.. .--..+.+|++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 366677776665433211 112 4466777777777653 3333 456677777777666444221 1112344677777
Q ss_pred EEEeeCCCCCCcc--h----HHHhccCCCcEEcccccc
Q 017788 90 RLYLSGCSNLRRI--P----ESIINLSKLELLHLKNCS 121 (366)
Q Consensus 90 ~L~Ls~n~~~~~l--p----~~i~~L~~L~~L~L~~n~ 121 (366)
+||+|.......- . +.-..|++|+.||.++..
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 7777764332211 1 111236677777776543
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.15 E-value=0.00015 Score=66.94 Aligned_cols=139 Identities=16% Similarity=0.085 Sum_probs=93.2
Q ss_pred cCCCCCCCEEeccCCCCCCCCC-----C-CCCCCCCcEEecccCCCcc----ccCccccCCcCCcEEecccccccC----
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLP-----D-LSQARNLENLLLKACSSLV----ETHSSIQYLSKLVTLDMRLCKNLN---- 76 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p-----~-l~~l~~L~~L~L~~n~~~~----~~p~~i~~L~~L~~L~L~~n~~~~---- 76 (366)
...-+.||++....|++ +.-+ . |...+.|+.+.++.|.+.. .+...+..+++|+.|||++|.+..
T Consensus 153 ~~~~~~Lrv~i~~rNrl-en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRL-ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred cCCCcceEEEEeecccc-ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 44567899999998887 3333 2 5667889999998885532 234567788999999999998653
Q ss_pred ccchhcCCCCCCcEEEeeCCCCCCcchH----HHh-ccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcc
Q 017788 77 RLPSSLCELISLQRLYLSGCSNLRRIPE----SII-NLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFS 151 (366)
Q Consensus 77 ~lp~~i~~l~~L~~L~Ls~n~~~~~lp~----~i~-~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~ 151 (366)
.+...++.+++|+.|++++|.+...--. .+. ..++|+.|.+.+|.+...--.-. ...+...+.|..|.++.
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l----a~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL----AACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH----HHHHhcchhhHHhcCCc
Confidence 3445666788899999999865443222 222 36789999999986543211000 00123356788888888
Q ss_pred ccc
Q 017788 152 FLF 154 (366)
Q Consensus 152 n~l 154 (366)
|.+
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 887
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.08 E-value=0.00034 Score=72.13 Aligned_cols=106 Identities=21% Similarity=0.230 Sum_probs=72.5
Q ss_pred CCCCEEeccCCCCC-CCCCC--CCCCCCCcEEecccCCCcc-ccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 15 VNLKEIDLSYSRQL-KKLPD--LSQARNLENLLLKACSSLV-ETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 15 ~~L~~L~Ls~n~~~-~~~p~--l~~l~~L~~L~L~~n~~~~-~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
.+|+.||+++.... ...|. -..+|+|+.|.+.+-.... .+-.-..++++|..||++++. +..+ .++++|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 46888888875543 22232 3467899999998743321 223345678999999999888 4555 67889999999
Q ss_pred EEeeCCCCCC-cchHHHhccCCCcEEccccccc
Q 017788 91 LYLSGCSNLR-RIPESIINLSKLELLHLKNCSK 122 (366)
Q Consensus 91 L~Ls~n~~~~-~lp~~i~~L~~L~~L~L~~n~~ 122 (366)
|.+.+-.+.. ..-..+.+|++|+.||+|..+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 9887644332 1224577899999999987543
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.06 E-value=3.9e-05 Score=61.72 Aligned_cols=57 Identities=16% Similarity=0.335 Sum_probs=25.5
Q ss_pred cCCcEEecccccccCccchhcC-CCCCCcEEEeeCCCCCCcchHHHhccCCCcEEccccc
Q 017788 62 SKLVTLDMRLCKNLNRLPSSLC-ELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC 120 (366)
Q Consensus 62 ~~L~~L~L~~n~~~~~lp~~i~-~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n 120 (366)
..|...+|++|. ...+|+.|. ..+.+++|++++|. +..+|..+..++.|+.|+++.|
T Consensus 53 ~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 53 YELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred ceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccC
Confidence 334444555444 344444333 23344555554442 2244444444455555544444
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.99 E-value=0.0005 Score=61.12 Aligned_cols=87 Identities=23% Similarity=0.190 Sum_probs=55.1
Q ss_pred CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccc--cccCccchhcCCCCCCcEEEeeCCCCCC--cchHHHhcc
Q 017788 34 LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLC--KNLNRLPSSLCELISLQRLYLSGCSNLR--RIPESIINL 109 (366)
Q Consensus 34 l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n--~~~~~lp~~i~~l~~L~~L~Ls~n~~~~--~lp~~i~~L 109 (366)
...+..|+.|.+.++..++. ..+-.|++|+.|.++.| ...+.++-....+++|++|++++|.+.. ++ ..+..+
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhh
Confidence 34556666666666543322 23456778888888888 5555565555566888888888886531 12 234566
Q ss_pred CCCcEEcccccccc
Q 017788 110 SKLELLHLKNCSKL 123 (366)
Q Consensus 110 ~~L~~L~L~~n~~l 123 (366)
.+|..|++.+|...
T Consensus 116 ~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVT 129 (260)
T ss_pred cchhhhhcccCCcc
Confidence 77788888877543
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.0001 Score=66.61 Aligned_cols=145 Identities=18% Similarity=0.210 Sum_probs=78.1
Q ss_pred CCCCCcEEecccCCCcc--ccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCC-cchHHHhccCCC
Q 017788 36 QARNLENLLLKACSSLV--ETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLR-RIPESIINLSKL 112 (366)
Q Consensus 36 ~l~~L~~L~L~~n~~~~--~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~-~lp~~i~~L~~L 112 (366)
..+.++.|+|.+|.+.. ++..-..+++.|++|||+.|.+...+...-..+.+|++|.|.|..+.- ..-..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45678888888874432 223335678888888888877543221111256678888887754322 223445667777
Q ss_pred cEEcccccccccc------cCCCCCCccEEecCCC---------------cCCccccCcccccccC-CCCCCceEEeCCc
Q 017788 113 ELLHLKNCSKLLS------LPELPCNLFSVGVRRC---------------TSLEALSSFSFLFSAM-SPHNDQYFNLSDC 170 (366)
Q Consensus 113 ~~L~L~~n~~l~~------lp~l~~~L~~L~l~~~---------------~~L~~L~l~~n~l~~~-~~~~~~~l~~l~~ 170 (366)
+.|.++.|..-+- +....+.++++.+..| +++..+-+..+.+... -......+..+.|
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 7777777632211 1111122333333332 3344444444433221 1122345667778
Q ss_pred ccCChhhhhc
Q 017788 171 LKLDQNELKG 180 (366)
Q Consensus 171 l~L~~n~l~~ 180 (366)
|+|+.|++..
T Consensus 229 LnL~~~~ids 238 (418)
T KOG2982|consen 229 LNLGANNIDS 238 (418)
T ss_pred hhhccccccc
Confidence 8898887764
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=4.8e-05 Score=68.77 Aligned_cols=86 Identities=24% Similarity=0.265 Sum_probs=54.9
Q ss_pred CCcEEecccCCCcc-ccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcch--HHHhccCCCcEE
Q 017788 39 NLENLLLKACSSLV-ETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIP--ESIINLSKLELL 115 (366)
Q Consensus 39 ~L~~L~L~~n~~~~-~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp--~~i~~L~~L~~L 115 (366)
.|++|||+...+.. .+..-+..+.+|+.|.|.++++...+-..+.+-.+|+.|+|++|+...... --+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 37777777643321 123334556777777777777666666667777778888888776554322 235667778888
Q ss_pred ccccccccc
Q 017788 116 HLKNCSKLL 124 (366)
Q Consensus 116 ~L~~n~~l~ 124 (366)
+++.|...+
T Consensus 266 NlsWc~l~~ 274 (419)
T KOG2120|consen 266 NLSWCFLFT 274 (419)
T ss_pred CchHhhccc
Confidence 888775543
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.50 E-value=0.0058 Score=54.92 Aligned_cols=111 Identities=17% Similarity=0.096 Sum_probs=76.3
Q ss_pred cCCCCCCCEEeccCCCCCCCCC----C-CCCCCCCcEEecccCCCccccC-c-------------cccCCcCCcEEeccc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLP----D-LSQARNLENLLLKACSSLVETH-S-------------SIQYLSKLVTLDMRL 71 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p----~-l~~l~~L~~L~L~~n~~~~~~p-~-------------~i~~L~~L~~L~L~~ 71 (366)
+-+|++|+..+||.|.+....| + ++..+.|.+|.|++|.. +.+. . -..+-+.|++.....
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 4579999999999999866655 3 68889999999998843 3221 1 123457899999888
Q ss_pred ccccCccch-----hcCCCCCCcEEEeeCCCCCCc-----chHHHhccCCCcEEcccccccc
Q 017788 72 CKNLNRLPS-----SLCELISLQRLYLSGCSNLRR-----IPESIINLSKLELLHLKNCSKL 123 (366)
Q Consensus 72 n~~~~~lp~-----~i~~l~~L~~L~Ls~n~~~~~-----lp~~i~~L~~L~~L~L~~n~~l 123 (366)
|++ ...|. .+..-..|+++.+..|.+... +-.++..+.+|+.||+.+|.+.
T Consensus 167 NRl-engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 167 NRL-ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred chh-ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 883 33332 232335788888888764321 1123456788999999988654
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.48 E-value=0.0034 Score=53.97 Aligned_cols=84 Identities=26% Similarity=0.203 Sum_probs=64.6
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCC-CCCCCcEEecccCCCccccC--ccccCCcCCcEEecccccccCccc----hhcC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLS-QARNLENLLLKACSSLVETH--SSIQYLSKLVTLDMRLCKNLNRLP----SSLC 83 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~-~l~~L~~L~L~~n~~~~~~p--~~i~~L~~L~~L~L~~n~~~~~lp----~~i~ 83 (366)
|..++.|.+|.|.+|+++..-|.+. -+++|..|.|.+|++ ..+. .-+..+++|++|.+-+|... .-+ -.+.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~Ltll~Npv~-~k~~YR~yvl~ 137 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEYLTLLGNPVE-HKKNYRLYVLY 137 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcch-hhhhhcchhccCCccceeeecCCchh-cccCceeEEEE
Confidence 6788999999999999987777754 567899999999854 3332 23567899999999998843 222 2467
Q ss_pred CCCCCcEEEeeCC
Q 017788 84 ELISLQRLYLSGC 96 (366)
Q Consensus 84 ~l~~L~~L~Ls~n 96 (366)
.+++|++||..+-
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 8999999998764
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.0002 Score=64.29 Aligned_cols=100 Identities=21% Similarity=0.169 Sum_probs=69.6
Q ss_pred CCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccch--hcCCCCCCcE
Q 017788 13 NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPS--SLCELISLQR 90 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~--~i~~l~~L~~ 90 (366)
.+.+.+.|++.+|.+ ..+.-..+++.|++|.|+-|++... ..+..+++|+.|+|+.|. +..+.+ -+.++++|+.
T Consensus 17 dl~~vkKLNcwg~~L-~DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGL-DDISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCc-cHHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhh
Confidence 356777888888876 3443356788899999998865443 347788899999998887 444433 2457888888
Q ss_pred EEeeCCCCCCcchH-----HHhccCCCcEEc
Q 017788 91 LYLSGCSNLRRIPE-----SIINLSKLELLH 116 (366)
Q Consensus 91 L~Ls~n~~~~~lp~-----~i~~L~~L~~L~ 116 (366)
|-|..|.-.+.-+. .+.-|++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888776665543 345577777776
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.29 E-value=0.0032 Score=56.08 Aligned_cols=64 Identities=17% Similarity=0.097 Sum_probs=44.5
Q ss_pred cccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCC--CCCCcchHHHhccCCCcEEccccccc
Q 017788 57 SIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC--SNLRRIPESIINLSKLELLHLKNCSK 122 (366)
Q Consensus 57 ~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n--~~~~~lp~~i~~L~~L~~L~L~~n~~ 122 (366)
-...+..|+.|.+.++..++ + ..+-.|++|+.|.+|.| .....++.....+++|++|++++|++
T Consensus 38 l~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred ccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 33445667777777666332 2 23347888999999998 55666666666779999999999864
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.25 E-value=0.00071 Score=60.61 Aligned_cols=163 Identities=15% Similarity=0.064 Sum_probs=94.8
Q ss_pred CCCCCCCEEeccCCCCCCCC----CC-CCCCCCCcEEecccCCCccc----cC-------ccccCCcCCcEEeccccccc
Q 017788 12 KNLVNLKEIDLSYSRQLKKL----PD-LSQARNLENLLLKACSSLVE----TH-------SSIQYLSKLVTLDMRLCKNL 75 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~~~~----p~-l~~l~~L~~L~L~~n~~~~~----~p-------~~i~~L~~L~~L~L~~n~~~ 75 (366)
..+..++.++||+|.+.+.- .. +.+-.+|+..+++.- .++. ++ +.+.++++|+..+|++|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34778889999999875442 22 666788888888763 3322 22 34567899999999999876
Q ss_pred Cccchh----cCCCCCCcEEEeeCCCCCCcch-HHH-------------hccCCCcEEcccccccccccCCCCCCccEEe
Q 017788 76 NRLPSS----LCELISLQRLYLSGCSNLRRIP-ESI-------------INLSKLELLHLKNCSKLLSLPELPCNLFSVG 137 (366)
Q Consensus 76 ~~lp~~----i~~l~~L~~L~Ls~n~~~~~lp-~~i-------------~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~ 137 (366)
...|+. |+.-+.|.+|.+++|.. +.+. .-| ..-+.|+......|++ ..-|.-. ....
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl-engs~~~---~a~~ 180 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL-ENGSKEL---SAAL 180 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh-ccCcHHH---HHHH
Confidence 666653 45668899999988753 3221 112 2345677777766643 2222100 0000
Q ss_pred cCCCcCCccccCcccccccC-----CCCCCceEEeCCcccCChhhhhc
Q 017788 138 VRRCTSLEALSSFSFLFSAM-----SPHNDQYFNLSDCLKLDQNELKG 180 (366)
Q Consensus 138 l~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~l~~l~L~~n~l~~ 180 (366)
+..=..|+.+.+..|.+... .-.-+..++.|..|+|.+|-++-
T Consensus 181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 11113566666666654321 00112345667777777777654
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.0041 Score=56.57 Aligned_cols=35 Identities=11% Similarity=-0.087 Sum_probs=21.1
Q ss_pred cCCCcCCccccCcccccccCCCC------CCceEEeCCccc
Q 017788 138 VRRCTSLEALSSFSFLFSAMSPH------NDQYFNLSDCLK 172 (366)
Q Consensus 138 l~~~~~L~~L~l~~n~l~~~~~~------~~~~l~~l~~l~ 172 (366)
+.+.++|..|.++.+.+...+.. .+++|+.++.|+
T Consensus 245 Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred HcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 44678888888888876543221 234555555544
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.72 E-value=0.02 Score=45.73 Aligned_cols=105 Identities=13% Similarity=0.149 Sum_probs=51.5
Q ss_pred eeccCCCCCCCEEeccCCCCCCCCCC--CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccch-hcCC
Q 017788 8 FLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPS-SLCE 84 (366)
Q Consensus 8 ~l~l~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~-~i~~ 84 (366)
...+.++++|+.+.+.. .+ ..++. |.++++|+.+.+.++ ....-...+.++++|+.+.+.+ . ...++. .+..
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~-~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~ 79 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TI-KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSN 79 (129)
T ss_dssp TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT
T ss_pred HHHHhCCCCCCEEEECC-Ce-eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-c-ccccccccccc
Confidence 34467777888888774 23 34442 777878888888764 3333334566777788888864 2 333333 4555
Q ss_pred CCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccc
Q 017788 85 LISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN 119 (366)
Q Consensus 85 l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~ 119 (366)
+++|+.+++..+ +...-...+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 788888887653 222222345554 677666654
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.83 E-value=0.016 Score=31.15 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=8.1
Q ss_pred CcEEecccccccCccchhc
Q 017788 64 LVTLDMRLCKNLNRLPSSL 82 (366)
Q Consensus 64 L~~L~L~~n~~~~~lp~~i 82 (366)
|++|+|++|++ +.+|++|
T Consensus 2 L~~Ldls~n~l-~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNL-TSIPSSF 19 (22)
T ss_dssp ESEEEETSSEE-SEEGTTT
T ss_pred ccEEECCCCcC-EeCChhh
Confidence 44455555542 2444443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=0.0024 Score=57.49 Aligned_cols=64 Identities=22% Similarity=0.112 Sum_probs=32.3
Q ss_pred CCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788 84 ELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA 156 (366)
Q Consensus 84 ~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~ 156 (366)
+|+.|++|.||-|.+... +.+..+++|+.|+|..|. +.++-++. .+.++++|+.|.+..|...+
T Consensus 39 kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~-I~sldEL~------YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNC-IESLDELE------YLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcc-cccHHHHH------HHhcCchhhhHhhccCCccc
Confidence 555666666666544322 234555666666666552 22222211 34455566666666555444
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.83 E-value=0.16 Score=40.30 Aligned_cols=95 Identities=17% Similarity=0.252 Sum_probs=50.4
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC--CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccc-hhcCCCCC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP-SSLCELIS 87 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp-~~i~~l~~ 87 (366)
+.++++|+.+++..+ + ..+++ |.++++|+.+.+..+ ....-...+..+++|+.+++..+ ...++ ..+.+. +
T Consensus 31 F~~~~~l~~i~~~~~-~-~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-L-TSIGDNAFSNCKSLESITFPNN-LKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-N 104 (129)
T ss_dssp TTT-TT-SEEEESST-T-SCE-TTTTTT-TT-EEEEETST-T-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T
T ss_pred ccccccccccccccc-c-cccceeeeeccccccccccccc-ccccccccccccccccccccCcc--ccEEchhhhcCC-C
Confidence 778889999999875 3 45553 889989999999753 33333456777999999999754 33444 455566 8
Q ss_pred CcEEEeeCCCCCCcchHHHhccCCC
Q 017788 88 LQRLYLSGCSNLRRIPESIINLSKL 112 (366)
Q Consensus 88 L~~L~Ls~n~~~~~lp~~i~~L~~L 112 (366)
|+.+.+..+ ....-...|.+.++|
T Consensus 105 l~~i~~~~~-~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 105 LKEINIPSN-ITKIEENAFKNCTKL 128 (129)
T ss_dssp --EEE-TTB--SS----GGG-----
T ss_pred ceEEEECCC-ccEECCccccccccC
Confidence 999888653 222223345555444
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.78 E-value=0.03 Score=30.07 Aligned_cols=19 Identities=32% Similarity=0.188 Sum_probs=9.8
Q ss_pred CcEEecccCCCccccCcccc
Q 017788 40 LENLLLKACSSLVETHSSIQ 59 (366)
Q Consensus 40 L~~L~L~~n~~~~~~p~~i~ 59 (366)
|++|+|++|.+. .+|++++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555666665333 5555444
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.90 E-value=0.003 Score=55.43 Aligned_cols=85 Identities=18% Similarity=0.151 Sum_probs=43.1
Q ss_pred CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCc
Q 017788 34 LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLE 113 (366)
Q Consensus 34 l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~ 113 (366)
+......+.||++.|+ +..+...+..++.|..|+++.|. ...+|..++.+..++.+++..| .....|.++++++.++
T Consensus 38 i~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcc
Confidence 4444555555555542 22333344445555555555554 4445555555555555555443 2334555555555555
Q ss_pred EEcccccc
Q 017788 114 LLHLKNCS 121 (366)
Q Consensus 114 ~L~L~~n~ 121 (366)
.+++.++.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 55555544
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.27 E-value=0.079 Score=52.21 Aligned_cols=111 Identities=26% Similarity=0.282 Sum_probs=63.6
Q ss_pred CCCCCCEEeccCCCCCCCC---CCCCCCCCCcEEecccC-CCccccC----ccccCCcCCcEEecccccccC-ccchhcC
Q 017788 13 NLVNLKEIDLSYSRQLKKL---PDLSQARNLENLLLKAC-SSLVETH----SSIQYLSKLVTLDMRLCKNLN-RLPSSLC 83 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~---p~l~~l~~L~~L~L~~n-~~~~~~p----~~i~~L~~L~~L~L~~n~~~~-~lp~~i~ 83 (366)
.+++|+.|.+..+...... +.....++|+.|++++| ......+ .....+++|+.|+++.+...+ ..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4677777777776544431 23566778888888763 2222221 233455778888888777322 2112222
Q ss_pred -CCCCCcEEEeeCCCC-CCc-chHHHhccCCCcEEcccccccc
Q 017788 84 -ELISLQRLYLSGCSN-LRR-IPESIINLSKLELLHLKNCSKL 123 (366)
Q Consensus 84 -~l~~L~~L~Ls~n~~-~~~-lp~~i~~L~~L~~L~L~~n~~l 123 (366)
.+++|++|.+.+|.. +.. +-.....+++|++|++++|..+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 367788888777753 221 2223345677888888877554
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.09 E-value=0.14 Score=25.53 Aligned_cols=10 Identities=40% Similarity=0.458 Sum_probs=3.0
Q ss_pred CcEEeccccc
Q 017788 64 LVTLDMRLCK 73 (366)
Q Consensus 64 L~~L~L~~n~ 73 (366)
|+.|+|++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=90.91 E-value=0.05 Score=51.80 Aligned_cols=112 Identities=19% Similarity=0.302 Sum_probs=62.0
Q ss_pred CCCCCEEeccCCCCCCCCC--C-CCCCCCCcEEecccCCCccccC--ccccCCcCCcEEecccccccCccc-hhc-CCCC
Q 017788 14 LVNLKEIDLSYSRQLKKLP--D-LSQARNLENLLLKACSSLVETH--SSIQYLSKLVTLDMRLCKNLNRLP-SSL-CELI 86 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p--~-l~~l~~L~~L~L~~n~~~~~~p--~~i~~L~~L~~L~L~~n~~~~~lp-~~i-~~l~ 86 (366)
..-+.++++..|...+... . -..+..|++|..++|...+..+ .-..+..+|+.|-+..|+..+..- ..+ .+.+
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 3445566666664433322 1 2356677888888776544321 123456778888888877543221 111 2567
Q ss_pred CCcEEEeeCCCCCCc--chHHHhccCCCcEEcccccccccc
Q 017788 87 SLQRLYLSGCSNLRR--IPESIINLSKLELLHLKNCSKLLS 125 (366)
Q Consensus 87 ~L~~L~Ls~n~~~~~--lp~~i~~L~~L~~L~L~~n~~l~~ 125 (366)
.|+.+++.+|..... +-.--.+++.|+.|.+++|..++.
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh
Confidence 777787777643221 111123566788888887765544
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.92 E-value=0.081 Score=45.67 Aligned_cols=80 Identities=26% Similarity=0.350 Sum_probs=42.9
Q ss_pred CcEEecccCCCccccCccccCCcCCcEEecccccccCccc-hhcC-CCCCCcEEEeeCCCCCCc-chHHHhccCCCcEEc
Q 017788 40 LENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP-SSLC-ELISLQRLYLSGCSNLRR-IPESIINLSKLELLH 116 (366)
Q Consensus 40 L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp-~~i~-~l~~L~~L~Ls~n~~~~~-lp~~i~~L~~L~~L~ 116 (366)
++.++-+++.+..+--+.+.+++.++.|.+.+|+.....- +-++ -.++|+.|+|++|..+.. --..+.++++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 5566666554433333445666667777777766543211 0111 346677777777754322 224556666666666
Q ss_pred ccc
Q 017788 117 LKN 119 (366)
Q Consensus 117 L~~ 119 (366)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 544
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=89.78 E-value=0.26 Score=47.15 Aligned_cols=134 Identities=22% Similarity=0.294 Sum_probs=78.6
Q ss_pred CCCCCCEEeccCCCCCCCCC--C-CCCCCCCcEEecccCCCccccC-ccc-cCCcCCcEEecccccccCc--cchhcCCC
Q 017788 13 NLVNLKEIDLSYSRQLKKLP--D-LSQARNLENLLLKACSSLVETH-SSI-QYLSKLVTLDMRLCKNLNR--LPSSLCEL 85 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p--~-l~~l~~L~~L~L~~n~~~~~~p-~~i-~~L~~L~~L~L~~n~~~~~--lp~~i~~l 85 (366)
.+..|++|+.+++...+..+ . ..+..+|++|.+++|+..+..- ..+ .+.+.|+.+++..|..... +-..-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 46678888888776543333 2 3466888888888886544321 112 3567788888887764322 22222367
Q ss_pred CCCcEEEeeCCCCCCcc-----hHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccc
Q 017788 86 ISLQRLYLSGCSNLRRI-----PESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFL 153 (366)
Q Consensus 86 ~~L~~L~Ls~n~~~~~l-----p~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~ 153 (366)
+.|+.|.+++|...... -..-..+..|..+.|++|+.+..-- |+ .+..|++|+.+.+...+
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~-----Le--~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT-----LE--HLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH-----HH--HHhhCcccceeeeechh
Confidence 78888888877544322 1222345567788888876543211 11 35567777776665443
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.33 E-value=0.0065 Score=53.40 Aligned_cols=86 Identities=13% Similarity=0.019 Sum_probs=64.8
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
+......+.||++.|++...--.|+-++.|..|+++.| .+..+|..++.+..++.+++..|. ....|.+++.++.++.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcch
Confidence 55667778888888876443335777788888888876 456678888888888888887666 7778888888888888
Q ss_pred EEeeCCCC
Q 017788 91 LYLSGCSN 98 (366)
Q Consensus 91 L~Ls~n~~ 98 (366)
+++.++.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 88877753
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=86.78 E-value=0.19 Score=49.53 Aligned_cols=87 Identities=28% Similarity=0.351 Sum_probs=53.2
Q ss_pred CCCCCcEEecccCCCccc--cCccccCCcCCcEEecccc-cccCccc----hhcCCCCCCcEEEeeCCC-CCCcchHHHh
Q 017788 36 QARNLENLLLKACSSLVE--THSSIQYLSKLVTLDMRLC-KNLNRLP----SSLCELISLQRLYLSGCS-NLRRIPESII 107 (366)
Q Consensus 36 ~l~~L~~L~L~~n~~~~~--~p~~i~~L~~L~~L~L~~n-~~~~~lp----~~i~~l~~L~~L~Ls~n~-~~~~lp~~i~ 107 (366)
..++|+.|.+.+|..+.. +-.....++.|+.|++++| ......+ .....+++|+.|+++.+. +....-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 467788888887766555 3345567788888888763 2222222 223356788888888876 3322223333
Q ss_pred c-cCCCcEEccccccc
Q 017788 108 N-LSKLELLHLKNCSK 122 (366)
Q Consensus 108 ~-L~~L~~L~L~~n~~ 122 (366)
. +++|+.|.+.+|..
T Consensus 266 ~~c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSN 281 (482)
T ss_pred hhCCCcceEccCCCCc
Confidence 3 67888888777753
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.92 E-value=0.85 Score=25.24 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=4.7
Q ss_pred CCcEEeccccc
Q 017788 63 KLVTLDMRLCK 73 (366)
Q Consensus 63 ~L~~L~L~~n~ 73 (366)
+|++|+|++|.
T Consensus 3 ~L~~L~L~~N~ 13 (26)
T smart00370 3 NLRELDLSNNQ 13 (26)
T ss_pred CCCEEECCCCc
Confidence 34444444443
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.92 E-value=0.85 Score=25.24 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=4.7
Q ss_pred CCcEEeccccc
Q 017788 63 KLVTLDMRLCK 73 (366)
Q Consensus 63 ~L~~L~L~~n~ 73 (366)
+|++|+|++|.
T Consensus 3 ~L~~L~L~~N~ 13 (26)
T smart00369 3 NLRELDLSNNQ 13 (26)
T ss_pred CCCEEECCCCc
Confidence 34444444443
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.08 E-value=0.71 Score=25.05 Aligned_cols=11 Identities=36% Similarity=0.407 Sum_probs=3.9
Q ss_pred CCcEEeccccc
Q 017788 63 KLVTLDMRLCK 73 (366)
Q Consensus 63 ~L~~L~L~~n~ 73 (366)
+|++|+|++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 34444444444
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.96 E-value=4.9 Score=22.52 Aligned_cols=14 Identities=50% Similarity=0.721 Sum_probs=9.5
Q ss_pred CCCCCEEeccCCCC
Q 017788 14 LVNLKEIDLSYSRQ 27 (366)
Q Consensus 14 l~~L~~L~Ls~n~~ 27 (366)
+.+|++|+|++|++
T Consensus 1 L~~L~~L~L~~NkI 14 (26)
T smart00365 1 LTNLEELDLSQNKI 14 (26)
T ss_pred CCccCEEECCCCcc
Confidence 35677777777766
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.82 E-value=4.1 Score=22.82 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=9.9
Q ss_pred CCcEEecccccccCccch
Q 017788 63 KLVTLDMRLCKNLNRLPS 80 (366)
Q Consensus 63 ~L~~L~L~~n~~~~~lp~ 80 (366)
+|+.|++++|+ +..+|+
T Consensus 3 ~L~~L~vs~N~-Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQ-LTSLPE 19 (26)
T ss_pred ccceeecCCCc-cccCcc
Confidence 45666666665 555554
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.80 E-value=5.5 Score=34.64 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=13.7
Q ss_pred CcEEecccccccCccchhcCCCCCCcEEEeeCC
Q 017788 64 LVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC 96 (366)
Q Consensus 64 L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n 96 (366)
++.++.+++.+...--+.+.++++++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 344444444433332333334444444444444
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.37 E-value=8.4 Score=21.77 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=7.5
Q ss_pred CCCCEEeccCCCC
Q 017788 15 VNLKEIDLSYSRQ 27 (366)
Q Consensus 15 ~~L~~L~Ls~n~~ 27 (366)
++|++|||++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 3456666666654
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=53.23 E-value=9.8 Score=20.90 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=6.3
Q ss_pred CCCcEEcccccc
Q 017788 110 SKLELLHLKNCS 121 (366)
Q Consensus 110 ~~L~~L~L~~n~ 121 (366)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 345555555554
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=50.65 E-value=1 Score=44.78 Aligned_cols=136 Identities=21% Similarity=0.125 Sum_probs=68.1
Q ss_pred CCCEEeccCCCCCCCC----CC-CCCCCCCcEEecccCCCcc----ccCcc----ccCCcCCcEEecccccccCc----c
Q 017788 16 NLKEIDLSYSRQLKKL----PD-LSQARNLENLLLKACSSLV----ETHSS----IQYLSKLVTLDMRLCKNLNR----L 78 (366)
Q Consensus 16 ~L~~L~Ls~n~~~~~~----p~-l~~l~~L~~L~L~~n~~~~----~~p~~----i~~L~~L~~L~L~~n~~~~~----l 78 (366)
.|++|++..|.++..- .+ +.....++.++++.|.... .++.. +....++++|++.+|..... +
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 4555666666554331 22 4445666666766664421 11222 22356677777777664321 1
Q ss_pred chhcCCCCC-CcEEEeeCCCCCCc----chHHHhcc-CCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccc
Q 017788 79 PSSLCELIS-LQRLYLSGCSNLRR----IPESIINL-SKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSF 152 (366)
Q Consensus 79 p~~i~~l~~-L~~L~Ls~n~~~~~----lp~~i~~L-~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n 152 (366)
-..+...++ +..|+++.|.+... +.+.+..+ ..+++++++.|.+...-.... .. .+..|..++.+.+..|
T Consensus 225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L---~~-~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL---AE-VLVSCRQLEELSLSNN 300 (478)
T ss_pred HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH---HH-HHhhhHHHHHhhcccC
Confidence 122333344 55577776654322 23334444 566777777776543322100 00 2345667777777776
Q ss_pred ccc
Q 017788 153 LFS 155 (366)
Q Consensus 153 ~l~ 155 (366)
.+.
T Consensus 301 ~l~ 303 (478)
T KOG4308|consen 301 PLT 303 (478)
T ss_pred ccc
Confidence 653
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=49.67 E-value=0.37 Score=47.83 Aligned_cols=165 Identities=23% Similarity=0.161 Sum_probs=102.5
Q ss_pred cCCCCCCCEEeccCCCCCCCC-----CCCCCC-CCCcEEecccCCCccc----cCccccCCcCCcEEecccccccC----
Q 017788 11 LKNLVNLKEIDLSYSRQLKKL-----PDLSQA-RNLENLLLKACSSLVE----THSSIQYLSKLVTLDMRLCKNLN---- 76 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~-----p~l~~l-~~L~~L~L~~n~~~~~----~p~~i~~L~~L~~L~L~~n~~~~---- 76 (366)
+.....|..|++++|.+...- ..+... ..|++|.+..|..... +...+.....++.++++.|.+..
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~ 190 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL 190 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence 456788999999999885221 123333 5678888888865443 34455667889999999988632
Q ss_pred ccchhc----CCCCCCcEEEeeCCCCCCc----chHHHhccCC-CcEEcccccccccccC-CCCCCccEEecCCC-cCCc
Q 017788 77 RLPSSL----CELISLQRLYLSGCSNLRR----IPESIINLSK-LELLHLKNCSKLLSLP-ELPCNLFSVGVRRC-TSLE 145 (366)
Q Consensus 77 ~lp~~i----~~l~~L~~L~Ls~n~~~~~----lp~~i~~L~~-L~~L~L~~n~~l~~lp-~l~~~L~~L~l~~~-~~L~ 145 (366)
.++..+ ....++++|++++|..+.. +-..+...++ +..|++..|+.-...- .+.+ .+..+ ..++
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~-----~l~~~~~~l~ 265 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLP-----CLSVLSETLR 265 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHH-----Hhcccchhhh
Confidence 223333 3577899999999876522 1123444555 7779998886543200 0000 22333 5678
Q ss_pred cccCcccccccCCC----CCCceEEeCCcccCChhhhhc
Q 017788 146 ALSSFSFLFSAMSP----HNDQYFNLSDCLKLDQNELKG 180 (366)
Q Consensus 146 ~L~l~~n~l~~~~~----~~~~~l~~l~~l~L~~n~l~~ 180 (366)
.++++.|.++..-. ..+.....+..+.++.|.+..
T Consensus 266 ~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 266 VLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 88888888765322 233345577778888887654
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.22 E-value=16 Score=36.50 Aligned_cols=66 Identities=23% Similarity=0.118 Sum_probs=32.9
Q ss_pred CCCCCcEEecccCCCcc--ccCccccCCcCCcEEecccccccCccchhcC--CCCCCcEEEeeCCCCCCc
Q 017788 36 QARNLENLLLKACSSLV--ETHSSIQYLSKLVTLDMRLCKNLNRLPSSLC--ELISLQRLYLSGCSNLRR 101 (366)
Q Consensus 36 ~l~~L~~L~L~~n~~~~--~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~--~l~~L~~L~Ls~n~~~~~ 101 (366)
+.+.+..++|++|++.. .+..-....++|.+|+|++|........++. +...|++|-+.||++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 34455556666664321 1222223456777777777732222112222 334467777777766554
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=33.31 E-value=21 Score=35.78 Aligned_cols=64 Identities=22% Similarity=0.173 Sum_probs=43.8
Q ss_pred CCCCCCEEeccCCCCCCCCCC----CCCCCCCcEEecccCCCccccCccccCC--cCCcEEecccccccCc
Q 017788 13 NLVNLKEIDLSYSRQLKKLPD----LSQARNLENLLLKACSSLVETHSSIQYL--SKLVTLDMRLCKNLNR 77 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~----l~~l~~L~~L~L~~n~~~~~~p~~i~~L--~~L~~L~L~~n~~~~~ 77 (366)
+.+.+..+.|++|++. .+.. -...|+|..|+|++|........++.++ ..|++|-|.+|.+.+.
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 5677888999999873 4433 3467899999999984333323334433 4588999999986554
Done!