Query 017788
Match_columns 366
No_of_seqs 496 out of 3501
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 04:57:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 7E-22 2.4E-26 185.2 7.7 171 11-193 100-280 (328)
2 4fcg_A Uncharacterized protein 99.8 9.5E-22 3.2E-26 184.4 8.3 172 11-193 123-304 (328)
3 3rgz_A Protein brassinosteroid 99.8 1.4E-21 4.9E-26 203.1 7.0 181 13-193 440-683 (768)
4 3rgz_A Protein brassinosteroid 99.8 7.1E-21 2.4E-25 197.9 10.0 175 11-193 462-707 (768)
5 1ogq_A PGIP-2, polygalacturona 99.8 3E-21 1E-25 179.7 4.8 173 11-184 97-286 (313)
6 1ogq_A PGIP-2, polygalacturona 99.8 1.6E-21 5.6E-26 181.5 2.3 169 15-192 50-223 (313)
7 1ozn_A Reticulon 4 receptor; N 99.8 9.2E-20 3.1E-24 167.0 11.5 173 13-193 54-228 (285)
8 3rfs_A Internalin B, repeat mo 99.8 2.9E-19 9.9E-24 162.8 11.6 164 11-183 59-222 (272)
9 3m19_A Variable lymphocyte rec 99.8 2.2E-18 7.4E-23 155.1 14.8 160 14-181 34-194 (251)
10 3v47_A TOLL-like receptor 5B a 99.8 2.9E-19 9.8E-24 174.2 9.3 183 11-193 50-326 (455)
11 1ozn_A Reticulon 4 receptor; N 99.8 2.7E-19 9.1E-24 163.9 8.5 181 5-193 22-204 (285)
12 2o6q_A Variable lymphocyte rec 99.8 9.3E-19 3.2E-23 159.2 10.9 170 15-192 37-207 (270)
13 3rfs_A Internalin B, repeat mo 99.8 6.8E-19 2.3E-23 160.4 8.2 164 11-189 81-245 (272)
14 2o6q_A Variable lymphocyte rec 99.8 4.6E-18 1.6E-22 154.6 13.4 162 11-180 57-219 (270)
15 3zyj_A Leucine-rich repeat-con 99.8 1.1E-18 3.7E-23 169.9 8.8 181 11-192 84-281 (440)
16 4eco_A Uncharacterized protein 99.8 2.3E-19 7.8E-24 182.7 4.1 152 31-191 198-377 (636)
17 2id5_A Lingo-1, leucine rich r 99.8 2.1E-18 7.3E-23 169.3 10.5 113 11-123 76-189 (477)
18 2z66_A Variable lymphocyte rec 99.7 2.7E-18 9.2E-23 158.8 10.3 162 12-181 98-263 (306)
19 3zyj_A Leucine-rich repeat-con 99.7 1.1E-18 3.7E-23 169.9 7.6 181 13-193 62-258 (440)
20 3v47_A TOLL-like receptor 5B a 99.7 1.1E-18 3.7E-23 170.1 7.3 183 11-193 75-350 (455)
21 3zyi_A Leucine-rich repeat-con 99.7 1.4E-18 4.7E-23 169.7 7.6 181 11-192 95-292 (452)
22 3zyi_A Leucine-rich repeat-con 99.7 1.5E-18 5E-23 169.5 7.7 180 14-193 74-269 (452)
23 4ezg_A Putative uncharacterize 99.7 3.8E-18 1.3E-22 147.9 8.8 156 11-180 40-195 (197)
24 2z62_A TOLL-like receptor 4, v 99.7 1.5E-18 5.2E-23 158.1 6.1 170 11-180 48-238 (276)
25 2o6s_A Variable lymphocyte rec 99.7 3.4E-18 1.2E-22 149.2 7.7 164 8-186 21-185 (208)
26 3t6q_A CD180 antigen; protein- 99.7 4.4E-18 1.5E-22 171.8 9.4 182 11-193 346-550 (606)
27 2ft3_A Biglycan; proteoglycan, 99.7 1.1E-17 3.9E-22 156.5 11.5 177 14-193 53-244 (332)
28 1xku_A Decorin; proteoglycan, 99.7 1.2E-17 4E-22 156.2 11.1 176 14-192 51-242 (330)
29 2z62_A TOLL-like receptor 4, v 99.7 1.5E-17 5.1E-22 151.5 11.2 146 11-156 72-238 (276)
30 3m19_A Variable lymphocyte rec 99.7 8.8E-18 3E-22 151.1 8.5 168 15-193 14-182 (251)
31 3o6n_A APL1; leucine-rich repe 99.7 1.1E-17 3.7E-22 160.1 9.6 180 11-193 65-275 (390)
32 2z66_A Variable lymphocyte rec 99.7 1.6E-18 5.4E-23 160.3 3.4 172 14-186 27-219 (306)
33 3oja_B Anopheles plasmodium-re 99.7 1.1E-17 3.7E-22 169.1 9.8 180 11-193 71-281 (597)
34 4ecn_A Leucine-rich repeat pro 99.7 1.6E-18 5.6E-23 181.1 3.1 157 11-179 444-632 (876)
35 1wwl_A Monocyte differentiatio 99.7 4.4E-18 1.5E-22 158.1 5.7 164 13-181 93-289 (312)
36 2id5_A Lingo-1, leucine rich r 99.7 1E-17 3.5E-22 164.4 8.6 175 11-193 124-323 (477)
37 3j0a_A TOLL-like receptor 5; m 99.7 1.2E-17 4E-22 175.4 9.5 183 11-193 44-317 (844)
38 1p9a_G Platelet glycoprotein I 99.7 4.8E-17 1.6E-21 149.7 12.4 155 15-180 31-186 (290)
39 1p9a_G Platelet glycoprotein I 99.7 1.9E-17 6.6E-22 152.3 9.4 169 11-193 6-175 (290)
40 1xku_A Decorin; proteoglycan, 99.7 2.3E-17 7.8E-22 154.2 9.9 178 11-193 72-266 (330)
41 3oja_B Anopheles plasmodium-re 99.7 3.3E-17 1.1E-21 165.5 11.7 167 11-180 95-292 (597)
42 4eco_A Uncharacterized protein 99.7 6.1E-18 2.1E-22 172.1 6.4 174 11-186 202-422 (636)
43 3t6q_A CD180 antigen; protein- 99.7 9.4E-18 3.2E-22 169.4 7.7 178 11-188 321-522 (606)
44 2z80_A TOLL-like receptor 2, v 99.7 1.9E-17 6.6E-22 156.3 8.4 173 13-193 50-225 (353)
45 3vq2_A TLR4, TOLL-like recepto 99.7 2.3E-17 7.9E-22 166.5 9.3 174 11-193 52-232 (606)
46 2z81_A CD282 antigen, TOLL-lik 99.7 1.6E-17 5.4E-22 165.7 7.9 173 14-193 25-199 (549)
47 3o6n_A APL1; leucine-rich repe 99.7 5.7E-17 1.9E-21 155.0 11.4 166 11-180 89-286 (390)
48 3vq2_A TLR4, TOLL-like recepto 99.7 2E-17 7E-22 166.9 8.4 166 14-187 31-202 (606)
49 2xwt_C Thyrotropin receptor; s 99.7 7E-18 2.4E-22 150.5 4.4 164 16-189 32-203 (239)
50 1ziw_A TOLL-like receptor 3; i 99.7 3.2E-17 1.1E-21 167.8 9.8 181 13-193 71-299 (680)
51 2ft3_A Biglycan; proteoglycan, 99.7 4.7E-17 1.6E-21 152.3 8.4 177 11-193 74-267 (332)
52 4ecn_A Leucine-rich repeat pro 99.7 3E-17 1E-21 171.6 7.6 158 13-183 489-661 (876)
53 1wwl_A Monocyte differentiatio 99.7 6.3E-17 2.1E-21 150.3 9.0 166 12-180 118-310 (312)
54 2z7x_B TOLL-like receptor 1, v 99.7 1.2E-16 4E-21 158.5 11.4 161 12-183 321-485 (520)
55 2v70_A SLIT-2, SLIT homolog 2 99.7 2.4E-16 8.2E-21 139.0 11.8 154 17-181 13-168 (220)
56 2z63_A TOLL-like receptor 4, v 99.7 1E-17 3.5E-22 167.7 3.0 173 12-193 344-521 (570)
57 2v9t_B SLIT homolog 2 protein 99.7 1.9E-16 6.6E-21 139.6 10.9 152 18-180 14-166 (220)
58 1ziw_A TOLL-like receptor 3; i 99.7 2E-16 6.9E-21 161.9 12.3 183 11-193 401-612 (680)
59 2z7x_B TOLL-like receptor 1, v 99.7 1.6E-16 5.6E-21 157.4 10.8 86 11-99 41-128 (520)
60 2z63_A TOLL-like receptor 4, v 99.7 2E-17 6.9E-22 165.5 4.1 164 12-183 370-535 (570)
61 4ezg_A Putative uncharacterize 99.7 2.8E-16 9.7E-21 136.0 10.7 134 11-156 62-195 (197)
62 2v9t_B SLIT homolog 2 protein 99.7 5.3E-16 1.8E-20 136.8 12.6 135 14-156 31-166 (220)
63 2z80_A TOLL-like receptor 2, v 99.7 7.3E-17 2.5E-21 152.3 7.4 171 11-183 96-318 (353)
64 1h6u_A Internalin H; cell adhe 99.7 1.4E-16 4.9E-21 147.7 9.2 151 13-182 61-211 (308)
65 2v70_A SLIT-2, SLIT homolog 2 99.7 5E-16 1.7E-20 136.9 12.2 135 14-156 31-167 (220)
66 3e6j_A Variable lymphocyte rec 99.7 9.2E-16 3.1E-20 136.1 13.9 153 17-181 21-174 (229)
67 3e6j_A Variable lymphocyte rec 99.7 4.2E-16 1.5E-20 138.3 11.6 141 7-156 32-173 (229)
68 4glp_A Monocyte differentiatio 99.7 1.2E-16 4.2E-21 148.1 8.4 158 12-181 114-287 (310)
69 4g8a_A TOLL-like receptor 4; l 99.7 5.5E-17 1.9E-21 163.9 6.3 144 15-166 52-197 (635)
70 3j0a_A TOLL-like receptor 5; m 99.7 1.9E-16 6.5E-21 166.2 10.4 172 13-184 22-222 (844)
71 2xot_A Amphoterin-induced prot 99.7 1.1E-16 3.9E-21 151.7 7.9 162 14-180 38-203 (361)
72 2xwt_C Thyrotropin receptor; s 99.6 5E-17 1.7E-21 144.9 4.6 165 11-186 51-225 (239)
73 3o53_A Protein LRIM1, AGAP0063 99.6 9.9E-17 3.4E-21 149.3 6.4 172 11-195 76-267 (317)
74 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 2.3E-16 7.9E-21 158.1 9.5 55 139-193 350-406 (562)
75 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 5.6E-16 1.9E-20 155.2 11.6 161 12-183 350-514 (562)
76 2z81_A CD282 antigen, TOLL-lik 99.6 3E-16 1E-20 156.4 9.5 176 11-186 46-243 (549)
77 2o6s_A Variable lymphocyte rec 99.6 1.1E-15 3.9E-20 133.2 11.5 141 11-166 48-189 (208)
78 3oja_A Leucine-rich immune mol 99.6 1.6E-16 5.3E-21 156.7 6.6 171 11-193 76-265 (487)
79 4glp_A Monocyte differentiatio 99.6 4.2E-16 1.4E-20 144.5 8.3 165 13-182 89-267 (310)
80 3bz5_A Internalin-J, INLJ; leu 99.6 7E-16 2.4E-20 150.8 9.9 160 11-181 166-354 (457)
81 1h6u_A Internalin H; cell adhe 99.6 9.2E-16 3.2E-20 142.2 10.0 151 11-180 81-231 (308)
82 4fmz_A Internalin; leucine ric 99.6 3.3E-15 1.1E-19 140.2 13.2 174 11-193 106-314 (347)
83 1h6t_A Internalin B; cell adhe 99.6 4.8E-16 1.6E-20 143.0 6.9 152 11-181 42-193 (291)
84 1h6t_A Internalin B; cell adhe 99.6 1.3E-15 4.3E-20 140.2 9.4 151 11-180 64-214 (291)
85 2xot_A Amphoterin-induced prot 99.6 1.6E-15 5.6E-20 143.6 10.2 165 17-192 20-189 (361)
86 3oja_A Leucine-rich immune mol 99.6 3.1E-16 1.1E-20 154.5 5.4 157 14-183 33-208 (487)
87 2ell_A Acidic leucine-rich nuc 99.6 3.1E-15 1.1E-19 125.8 9.8 137 12-156 21-161 (168)
88 3cvr_A Invasion plasmid antige 99.6 8.5E-15 2.9E-19 146.5 14.2 161 15-192 80-256 (571)
89 1xeu_A Internalin C; cellular 99.6 2E-15 6.9E-20 136.8 8.2 151 11-181 37-187 (263)
90 2je0_A Acidic leucine-rich nuc 99.6 2.8E-15 9.5E-20 123.6 8.2 132 12-150 14-148 (149)
91 2ast_B S-phase kinase-associat 99.6 3.9E-16 1.3E-20 145.8 3.4 109 13-121 91-206 (336)
92 4g8a_A TOLL-like receptor 4; l 99.6 3.8E-15 1.3E-19 150.3 10.7 162 11-180 416-581 (635)
93 4fmz_A Internalin; leucine ric 99.6 4.3E-15 1.5E-19 139.5 9.7 164 11-193 173-336 (347)
94 3bz5_A Internalin-J, INLJ; leu 99.6 4.7E-15 1.6E-19 144.9 10.2 159 13-183 62-250 (457)
95 1m9s_A Internalin B; cell inva 99.6 4.7E-15 1.6E-19 149.6 9.5 151 12-181 40-190 (605)
96 1m9s_A Internalin B; cell inva 99.6 1.7E-15 5.7E-20 152.9 5.6 152 11-181 61-212 (605)
97 1o6v_A Internalin A; bacterial 99.6 6.2E-15 2.1E-19 144.3 9.1 163 11-183 195-370 (466)
98 1w8a_A SLIT protein; signaling 99.5 1.7E-14 5.9E-19 124.3 10.6 128 18-156 11-140 (192)
99 1o6v_A Internalin A; bacterial 99.5 1.4E-14 4.8E-19 141.8 11.1 161 12-181 218-390 (466)
100 1jl5_A Outer protein YOPM; leu 99.5 5E-14 1.7E-18 137.5 14.5 78 11-97 191-268 (454)
101 2ast_B S-phase kinase-associat 99.5 3.2E-16 1.1E-20 146.5 -1.1 162 15-176 70-257 (336)
102 3g06_A SSPH2 (leucine-rich rep 99.5 5.6E-14 1.9E-18 142.1 14.9 81 110-192 221-310 (622)
103 2ell_A Acidic leucine-rich nuc 99.5 1.3E-14 4.4E-19 122.0 8.3 136 36-180 22-161 (168)
104 2je0_A Acidic leucine-rich nuc 99.5 1.5E-14 5.3E-19 119.1 6.5 128 36-174 15-148 (149)
105 2ca6_A RAN GTPase-activating p 99.5 3.4E-16 1.2E-20 149.5 -4.0 162 11-180 56-258 (386)
106 1w8a_A SLIT protein; signaling 99.5 5.8E-14 2E-18 121.0 10.4 112 14-125 28-141 (192)
107 4b8c_D Glucose-repressible alc 99.5 2.6E-15 9E-20 154.8 2.2 114 11-128 220-334 (727)
108 1jl5_A Outer protein YOPM; leu 99.5 1.7E-13 5.7E-18 133.9 14.6 132 15-156 131-291 (454)
109 3o53_A Protein LRIM1, AGAP0063 99.5 5.4E-15 1.8E-19 137.5 3.8 151 12-174 117-270 (317)
110 4b8c_D Glucose-repressible alc 99.5 2E-14 6.9E-19 148.2 8.4 125 53-189 215-339 (727)
111 4ay9_X Follicle-stimulating ho 99.5 1.3E-14 4.6E-19 136.7 6.0 179 15-193 30-229 (350)
112 1a9n_A U2A', U2A'; complex (nu 99.5 4.1E-14 1.4E-18 120.0 7.9 133 11-153 15-151 (176)
113 3g06_A SSPH2 (leucine-rich rep 99.5 4.6E-14 1.6E-18 142.7 9.3 107 15-137 61-167 (622)
114 1xeu_A Internalin C; cellular 99.5 1.7E-13 5.7E-18 124.1 12.1 129 11-157 59-187 (263)
115 2wfh_A SLIT homolog 2 protein 99.5 2E-13 6.7E-18 117.8 11.6 126 18-155 13-139 (193)
116 2ca6_A RAN GTPase-activating p 99.5 2.7E-15 9.2E-20 143.2 -1.5 178 11-193 28-247 (386)
117 2o6r_A Variable lymphocyte rec 99.5 3.7E-13 1.3E-17 114.1 11.9 130 17-156 9-138 (177)
118 2o6r_A Variable lymphocyte rec 99.4 6.5E-13 2.2E-17 112.6 12.0 133 40-183 9-141 (177)
119 3cvr_A Invasion plasmid antige 99.4 2.6E-13 8.9E-18 135.7 11.1 156 16-192 60-232 (571)
120 2wfh_A SLIT homolog 2 protein 99.4 5.9E-13 2E-17 114.8 10.7 108 14-122 30-138 (193)
121 1dce_A Protein (RAB geranylger 99.4 1E-12 3.5E-17 131.6 12.6 106 16-125 442-548 (567)
122 4ay9_X Follicle-stimulating ho 99.4 3.8E-13 1.3E-17 126.7 7.0 170 18-193 12-205 (350)
123 3goz_A Leucine-rich repeat-con 99.4 4.4E-14 1.5E-18 133.7 -0.9 112 12-123 19-151 (362)
124 1a9n_A U2A', U2A'; complex (nu 99.3 2.3E-12 8E-17 109.1 8.7 104 15-122 42-152 (176)
125 1ds9_A Outer arm dynein; leuci 99.3 6.3E-15 2.1E-19 127.6 -8.7 135 13-159 16-157 (198)
126 3g39_A Variable lymphocyte rec 99.3 7.2E-12 2.5E-16 105.6 10.4 103 17-122 11-114 (170)
127 1dce_A Protein (RAB geranylger 99.3 4.1E-12 1.4E-16 127.3 9.2 159 11-183 368-550 (567)
128 1z7x_W Ribonuclease inhibitor; 99.3 5.5E-14 1.9E-18 136.9 -4.7 181 13-193 168-401 (461)
129 2r9u_A Variable lymphocyte rec 99.3 1.4E-11 4.8E-16 104.3 10.6 102 18-122 15-117 (174)
130 1ds9_A Outer arm dynein; leuci 99.3 4.4E-14 1.5E-18 122.2 -5.1 133 11-148 44-180 (198)
131 3goz_A Leucine-rich repeat-con 99.3 2.9E-13 9.9E-18 128.1 -0.6 107 19-125 2-124 (362)
132 1z7x_W Ribonuclease inhibitor; 99.3 9E-14 3.1E-18 135.3 -5.1 43 141-183 369-415 (461)
133 3g39_A Variable lymphocyte rec 99.2 4.1E-11 1.4E-15 100.9 9.3 106 40-156 11-116 (170)
134 2r9u_A Variable lymphocyte rec 99.2 7.4E-11 2.5E-15 99.8 9.1 106 40-156 14-119 (174)
135 3sb4_A Hypothetical leucine ri 99.1 8.8E-12 3E-16 116.3 0.7 169 14-193 48-300 (329)
136 3ogk_B Coronatine-insensitive 99.1 3.3E-12 1.1E-16 128.2 -4.8 110 13-122 110-232 (592)
137 2ifg_A High affinity nerve gro 99.1 3.8E-10 1.3E-14 105.7 9.3 102 19-122 12-115 (347)
138 2ifg_A High affinity nerve gro 99.0 9.2E-10 3.1E-14 103.1 8.3 106 41-156 11-117 (347)
139 2p1m_B Transport inhibitor res 99.0 2.4E-11 8E-16 121.9 -2.9 111 13-123 103-224 (594)
140 3un9_A NLR family member X1; l 98.9 1.3E-11 4.4E-16 117.3 -6.7 165 14-186 71-259 (372)
141 3ogk_B Coronatine-insensitive 98.9 5.4E-11 1.8E-15 119.3 -2.9 102 17-119 140-252 (592)
142 3sb4_A Hypothetical leucine ri 98.8 6.5E-09 2.2E-13 96.7 7.4 168 14-193 100-324 (329)
143 2p1m_B Transport inhibitor res 98.8 2.1E-10 7.2E-15 115.0 -4.6 108 13-120 128-245 (594)
144 3un9_A NLR family member X1; l 98.7 5E-10 1.7E-14 106.3 -3.2 135 14-156 100-253 (372)
145 4fdw_A Leucine rich hypothetic 98.5 1.2E-07 4.3E-12 90.6 8.2 37 137-174 295-331 (401)
146 2ra8_A Uncharacterized protein 98.5 1.7E-08 5.8E-13 95.2 -0.2 161 13-181 137-322 (362)
147 2ra8_A Uncharacterized protein 98.4 1.4E-07 4.8E-12 88.9 4.4 135 12-156 169-321 (362)
148 1io0_A Tropomodulin; LRR prote 98.3 2.6E-07 8.8E-12 78.6 2.8 87 12-98 33-135 (185)
149 3e4g_A ATP synthase subunit S, 98.2 1.3E-06 4.6E-11 73.2 5.0 87 38-124 61-153 (176)
150 4fdw_A Leucine rich hypothetic 98.2 4.7E-06 1.6E-10 79.6 9.2 149 14-179 202-358 (401)
151 3rw6_A Nuclear RNA export fact 98.2 2E-06 6.9E-11 77.3 6.1 66 60-127 168-237 (267)
152 3rw6_A Nuclear RNA export fact 98.1 1.4E-06 4.9E-11 78.3 3.9 100 15-117 141-258 (267)
153 1io0_A Tropomodulin; LRR prote 98.0 9.3E-07 3.2E-11 75.1 1.0 87 35-121 33-134 (185)
154 3e4g_A ATP synthase subunit S, 98.0 3.8E-06 1.3E-10 70.4 3.4 87 15-101 61-154 (176)
155 4gt6_A Cell surface protein; l 97.1 0.0016 5.5E-08 61.5 9.4 81 34-118 261-342 (394)
156 4h09_A Hypothetical leucine ri 97.1 0.0025 8.4E-08 59.7 10.4 105 34-150 236-341 (379)
157 4h09_A Hypothetical leucine ri 96.7 0.0022 7.4E-08 60.2 6.4 125 36-173 215-340 (379)
158 4fs7_A Uncharacterized protein 96.6 0.0065 2.2E-07 57.3 9.4 83 81-174 292-374 (394)
159 4fs7_A Uncharacterized protein 96.6 0.0072 2.5E-07 57.0 9.3 125 11-152 249-376 (394)
160 4gt6_A Cell surface protein; l 96.4 0.007 2.4E-07 57.1 7.9 109 56-176 259-367 (394)
161 1pgv_A TMD-1, tropomodulin TMD 95.4 0.015 5E-07 49.4 4.7 62 13-74 39-110 (197)
162 3rfe_A Platelet glycoprotein I 94.5 0.076 2.6E-06 41.7 6.4 37 63-99 32-68 (130)
163 3rfe_A Platelet glycoprotein I 94.4 0.049 1.7E-06 42.8 5.0 54 66-122 12-67 (130)
164 1pgv_A TMD-1, tropomodulin TMD 93.7 0.047 1.6E-06 46.3 3.8 63 37-99 40-111 (197)
165 2lz0_A Uncharacterized protein 24.2 1.8E+02 0.0062 20.8 5.9 37 34-71 16-52 (100)
166 2lz0_A Uncharacterized protein 22.2 1.9E+02 0.0065 20.7 5.6 37 9-47 14-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=7e-22 Score=185.23 Aligned_cols=171 Identities=25% Similarity=0.259 Sum_probs=143.9
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCC-----
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCE----- 84 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~----- 84 (366)
+.++++|++|+|++|.+. .+|. ++++++|++|+|++|.+. .+|..++.+++|++|+|++|...+.+|..++.
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 456888999999999886 6775 888999999999988655 78888999999999999998888888887654
Q ss_pred ----CCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCC
Q 017788 85 ----LISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPH 160 (366)
Q Consensus 85 ----l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~ 160 (366)
+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|. .+.++++|+.|+++.|.+.+.+|.
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~--------~l~~l~~L~~L~Ls~n~~~~~~p~ 247 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGP--------AIHHLPKLEELDLRGCTALRNYPP 247 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCG--------GGGGCTTCCEEECTTCTTCCBCCC
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCch--------hhccCCCCCEEECcCCcchhhhHH
Confidence 889999999998766 78888999999999999998654 5665 677888999999999988888999
Q ss_pred CCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 161 NDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 161 ~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
.++.+..|+.+++++|.+.+.+|..+.++++|+
T Consensus 248 ~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280 (328)
T ss_dssp CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred HhcCCCCCCEEECCCCCchhhcchhhhcCCCCC
Confidence 999999999999999988888887777666664
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=9.5e-22 Score=184.36 Aligned_cols=172 Identities=20% Similarity=0.267 Sum_probs=156.0
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccC---------CcCCcEEecccccccCccch
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQY---------LSKLVTLDMRLCKNLNRLPS 80 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~---------L~~L~~L~L~~n~~~~~lp~ 80 (366)
++++++|++|+|++|.+. .+|. +.++++|++|++++|...+.+|..++. +++|++|+|++|.+ ..+|.
T Consensus 123 ~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~ 200 (328)
T 4fcg_A 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPA 200 (328)
T ss_dssp GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCG
T ss_pred HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchH
Confidence 567899999999999986 7775 999999999999999999999987765 99999999999985 48999
Q ss_pred hcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCC
Q 017788 81 SLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPH 160 (366)
Q Consensus 81 ~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~ 160 (366)
.++.+++|++|+|++|.+. .+|..++.+++|+.|++++|...+.+|. .+.++++|+.|+++.|.+.+.+|.
T Consensus 201 ~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~--------~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 201 SIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPP--------IFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp GGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCC--------CTTCCCCCCEEECTTCTTCCBCCT
T ss_pred hhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHH--------HhcCCCCCCEEECCCCCchhhcch
Confidence 9999999999999999876 5777899999999999999999999998 788899999999999998888999
Q ss_pred CCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 161 NDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 161 ~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
.+..+..|+.+++++|.+.+.+|..+.+++.+.
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred hhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 999999999999999999999998887776664
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=1.4e-21 Score=203.07 Aligned_cols=181 Identities=19% Similarity=0.176 Sum_probs=114.8
Q ss_pred CCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788 13 NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL 91 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L 91 (366)
++++|++|++++|.+.+.+|. +..+++|++|++++|.+.+.+|..++.+++|++|+|++|++.+.+|..++.+++|++|
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence 445555555555555555554 5556666666666665555556666666666666666666555666666666666666
Q ss_pred EeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCc---cE---------------------------------
Q 017788 92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNL---FS--------------------------------- 135 (366)
Q Consensus 92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L---~~--------------------------------- 135 (366)
+|++|.+.+.+|..++++++|+.|++++|++.+.+|...... ..
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 666666666666666666666666666666655555321110 00
Q ss_pred --------------------------EecCCCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHH
Q 017788 136 --------------------------VGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKI 189 (366)
Q Consensus 136 --------------------------L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l 189 (366)
-.+.++++|+.|+++.|.+++.+|..++.+..++.|+|++|.++|.+|..++++
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence 012335667778888888888788888888888888888888888888877777
Q ss_pred Hhhh
Q 017788 190 QQKA 193 (366)
Q Consensus 190 ~~L~ 193 (366)
+.|+
T Consensus 680 ~~L~ 683 (768)
T 3rgz_A 680 RGLN 683 (768)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 6665
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=7.1e-21 Score=197.87 Aligned_cols=175 Identities=20% Similarity=0.168 Sum_probs=147.8
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
+..+++|++|+|++|++.+.+|. +.++++|++|++++|.+.+.+|..++.+++|++|+|++|.+.+.+|..++.+++|+
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence 44678899999999998888886 88899999999999988888888899999999999999988888898888899999
Q ss_pred EEEeeCCCCCCcchHHHh--------------------------------------------------------------
Q 017788 90 RLYLSGCSNLRRIPESII-------------------------------------------------------------- 107 (366)
Q Consensus 90 ~L~Ls~n~~~~~lp~~i~-------------------------------------------------------------- 107 (366)
.|++++|.+.+.+|..+.
T Consensus 542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence 999998887777775543
Q ss_pred --------ccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhh
Q 017788 108 --------NLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELK 179 (366)
Q Consensus 108 --------~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~ 179 (366)
.+++|+.|++++|++.+.+|. .++++++|+.|+++.|.+++.+|..++.+..|+.|+|++|.++
T Consensus 622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~--------~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPK--------EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp EECCCSCSSSBCCCEEECCSSCCBSCCCG--------GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ccCchhhhccccccEEECcCCcccccCCH--------HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 246788889999888888887 7788888888888888888888888888888888888888888
Q ss_pred cchHHHHHHHHhhh
Q 017788 180 GIAEDALQKIQQKA 193 (366)
Q Consensus 180 ~~~~~~~~~l~~L~ 193 (366)
|.+|..+.+++.|+
T Consensus 694 g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 694 GRIPQAMSALTMLT 707 (768)
T ss_dssp ECCCGGGGGCCCCS
T ss_pred CcCChHHhCCCCCC
Confidence 88888887777665
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=3e-21 Score=179.73 Aligned_cols=173 Identities=18% Similarity=0.169 Sum_probs=130.0
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCC-CC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELI-SL 88 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~-~L 88 (366)
++++++|++|+|++|.+.+.+|. +.++++|++|++++|.+.+.+|..++.+++|++|+|++|.+.+.+|..++.++ +|
T Consensus 97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L 176 (313)
T 1ogq_A 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176 (313)
T ss_dssp GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence 45788999999999998778886 89999999999999988778899999999999999999998778999999888 89
Q ss_pred cEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCC---CCccEEecC------------CCcCCccccCcccc
Q 017788 89 QRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELP---CNLFSVGVR------------RCTSLEALSSFSFL 153 (366)
Q Consensus 89 ~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~---~~L~~L~l~------------~~~~L~~L~l~~n~ 153 (366)
++|++++|.+.+.+|..+..++ |+.|++++|.+.+..|... .+|+.|+++ .+++|+.|+++.|.
T Consensus 177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp CEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred cEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence 9999999988888898898887 9999999987776666521 233333332 23455555555555
Q ss_pred cccCCCCCCceEEeCCcccCChhhhhcchHH
Q 017788 154 FSAMSPHNDQYFNLSDCLKLDQNELKGIAED 184 (366)
Q Consensus 154 l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~ 184 (366)
+++.+|..+..+..++.+++++|.+++.+|.
T Consensus 256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 5544555555555555555555555554444
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=1.6e-21 Score=181.51 Aligned_cols=169 Identities=18% Similarity=0.171 Sum_probs=96.2
Q ss_pred CCCCEEeccCCCCCC--CCCC-CCCCCCCcEEeccc-CCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 15 VNLKEIDLSYSRQLK--KLPD-LSQARNLENLLLKA-CSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 15 ~~L~~L~Ls~n~~~~--~~p~-l~~l~~L~~L~L~~-n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
.++++|+|++|.+.+ .+|. +.++++|++|++++ |...+.+|..++.+++|++|+|++|.+.+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456666666666655 4554 66666666666663 5555556666666666666666666655566666666666666
Q ss_pred EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCc-CCccccCcccccccCCCCCCceEEeCC
Q 017788 91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCT-SLEALSSFSFLFSAMSPHNDQYFNLSD 169 (366)
Q Consensus 91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~l~ 169 (366)
|++++|.+.+.+|..+..+++|++|++++|.+.+.+|. .+.+++ +|+.|+++.|.+++.+|..+..+. ++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--------~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD--------SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCG--------GGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCH--------HHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence 66666666556666666666666666666655545554 333443 445555555554444444444444 44
Q ss_pred cccCChhhhhcchHHHHHHHHhh
Q 017788 170 CLKLDQNELKGIAEDALQKIQQK 192 (366)
Q Consensus 170 ~l~L~~n~l~~~~~~~~~~l~~L 192 (366)
.+++++|.+++..|..+.++++|
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l~~L 223 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSDKNT 223 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCC
T ss_pred EEECcCCcccCcCCHHHhcCCCC
Confidence 45555554444444444333333
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=9.2e-20 Score=167.03 Aligned_cols=173 Identities=23% Similarity=0.196 Sum_probs=94.0
Q ss_pred CCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCcccc-CccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 13 NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVET-HSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~-p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
++++|++|+|++|.+.+..|. +.++++|++|++++|..++.+ |..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence 344444444444444333332 444444455554444322222 334444444555555444433333444444445555
Q ss_pred EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788 91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC 170 (366)
Q Consensus 91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~ 170 (366)
|++++|.+....+..++++++|+.|++++|++. .+|.. .+.++++|+.|+++.|.+++..|..+..+..++.
T Consensus 134 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 205 (285)
T 1ozn_A 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPER-------AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205 (285)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTT-------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred EECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHH-------HhcCccccCEEECCCCcccccCHhHccCcccccE
Confidence 555544444333333444445555555544322 22210 2445678888888888888877778888888888
Q ss_pred ccCChhhhhcchHHHHHHHHhhh
Q 017788 171 LKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 171 l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
+++++|.++++.+..+..++.|+
T Consensus 206 L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 206 LYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp EECCSSCCSCCCHHHHTTCTTCC
T ss_pred eeCCCCcCCcCCHHHcccCcccC
Confidence 88888888887777776666654
No 8
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=2.9e-19 Score=162.83 Aligned_cols=164 Identities=15% Similarity=0.071 Sum_probs=121.1
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
++.+++|++|+|++|.+.+ ++.+..+++|++|++++|.+.+..+..++.+++|++|+|++|.+.+..|..+..+++|++
T Consensus 59 l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 4567788888888887743 556778888888888888665555555778888888888888765555555777888888
Q ss_pred EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788 91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC 170 (366)
Q Consensus 91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~ 170 (366)
|++++|.+.+..|..++.+++|+.|++++|++.+..+. .+.++++|+.|+++.|.+++..+..+..+..++.
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG--------VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 209 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH--------HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCE
Confidence 88888876655555667788888888888855433333 3567788888888888888877777788888888
Q ss_pred ccCChhhhhcchH
Q 017788 171 LKLDQNELKGIAE 183 (366)
Q Consensus 171 l~L~~n~l~~~~~ 183 (366)
+++++|++.+..|
T Consensus 210 L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 210 IWLHDNPWDCTCP 222 (272)
T ss_dssp EECCSSCBCCCTT
T ss_pred EEccCCCccccCc
Confidence 8888888776543
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.78 E-value=2.2e-18 Score=155.10 Aligned_cols=160 Identities=16% Similarity=0.081 Sum_probs=138.1
Q ss_pred CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788 14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY 92 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~ 92 (366)
.++|+.|+|++|.+.+..+. +.++++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..+..+++|++|+
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 35799999999999777775 99999999999999988777777799999999999999997666667788999999999
Q ss_pred eeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCccc
Q 017788 93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLK 172 (366)
Q Consensus 93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~ 172 (366)
|++|.+.+..+..+..+++|+.|++++|.+.+..+. .+.++++|+.|+++.|.+++..+..+..+..++.++
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG--------AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH--------HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 999988766666678999999999999965443333 467889999999999999997777889999999999
Q ss_pred CChhhhhcc
Q 017788 173 LDQNELKGI 181 (366)
Q Consensus 173 L~~n~l~~~ 181 (366)
+++|++...
T Consensus 186 l~~N~~~c~ 194 (251)
T 3m19_A 186 LFGNQFDCS 194 (251)
T ss_dssp CCSCCBCTT
T ss_pred eeCCceeCC
Confidence 999999865
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.78 E-value=2.9e-19 Score=174.20 Aligned_cols=183 Identities=17% Similarity=0.135 Sum_probs=139.1
Q ss_pred cCCCCCCCEEeccCCCCCCCCC-C-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchh--cCCCC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLP-D-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS--LCELI 86 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p-~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~--i~~l~ 86 (366)
++++++|++|+|++|.+.+.++ . |.++++|++|+|++|.+.+..|..++++++|++|+|++|.+.+..|.. +..++
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence 5678899999999998876664 3 889999999999998877777888999999999999999877666665 88899
Q ss_pred CCcEEEeeCCCCCCcchHH-HhccCCCcEEcccccccccccCCCC-----------------------------------
Q 017788 87 SLQRLYLSGCSNLRRIPES-IINLSKLELLHLKNCSKLLSLPELP----------------------------------- 130 (366)
Q Consensus 87 ~L~~L~Ls~n~~~~~lp~~-i~~L~~L~~L~L~~n~~l~~lp~l~----------------------------------- 130 (366)
+|++|++++|.+.+..|.. +.++++|++|++++|.+.+..|...
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 209 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTT
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccc
Confidence 9999999999887776766 7889999999999887655544321
Q ss_pred --CCccEEecCCC----------------------------------------------------cCCccccCccccccc
Q 017788 131 --CNLFSVGVRRC----------------------------------------------------TSLEALSSFSFLFSA 156 (366)
Q Consensus 131 --~~L~~L~l~~~----------------------------------------------------~~L~~L~l~~n~l~~ 156 (366)
.+|+.|+++++ ++|+.|+++.|.+.+
T Consensus 210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289 (455)
T ss_dssp TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc
Confidence 23555555443 356666677777766
Q ss_pred CCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 157 MSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 157 ~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
..|..++.+..++.+++++|.+.++.+..+.++++|+
T Consensus 290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence 6677777777777777877777777666666666554
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=2.7e-19 Score=163.94 Aligned_cols=181 Identities=19% Similarity=0.147 Sum_probs=152.4
Q ss_pred ccceeccCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCcc-chhc
Q 017788 5 NLRFLILKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRL-PSSL 82 (366)
Q Consensus 5 ~L~~l~l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~l-p~~i 82 (366)
.|+.+...-.++|++|+|++|.+.+..+. +..+++|++|++++|.+.+..|..++.+++|++|++++|..++.+ |..+
T Consensus 22 ~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~ 101 (285)
T 1ozn_A 22 GLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101 (285)
T ss_dssp CCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred CcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence 34444455567999999999999665555 999999999999999777766889999999999999999744444 7789
Q ss_pred CCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCC
Q 017788 83 CELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHND 162 (366)
Q Consensus 83 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~ 162 (366)
..+++|++|++++|.+.+..|..+.++++|++|++++|.+....+. .+.++++|+.|+++.|.++...+..+
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD--------TFRDLGNLTHLFLHGNRISSVPERAF 173 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh--------HhccCCCccEEECCCCcccccCHHHh
Confidence 9999999999999998887788899999999999999966543333 46788999999999999998666778
Q ss_pred ceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 163 QYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 163 ~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
..+..++.+++++|.+.+..|..+.++++|+
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cCccccCEEECCCCcccccCHhHccCccccc
Confidence 9999999999999999988887776666654
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=9.3e-19 Score=159.23 Aligned_cols=170 Identities=22% Similarity=0.182 Sum_probs=111.9
Q ss_pred CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEe
Q 017788 15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL 93 (366)
Q Consensus 15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~L 93 (366)
++|++|+|++|.+....+. |.++++|++|++++|.+....+..+..+++|++|+|++|.+....+..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 4578888888877554443 777888888888877554433344577788888888877755444445667788888888
Q ss_pred eCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccC
Q 017788 94 SGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKL 173 (366)
Q Consensus 94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L 173 (366)
++|.+....|..+..+++|++|++++|.+ +.+|.. .+.++++|+.|+++.|.++...+..+..+..++.+++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~-------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKG-------VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcC-CccCHh-------HccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence 88777666666677788888888888754 334431 2455666666677666666655555666666666777
Q ss_pred ChhhhhcchHHHHHHHHhh
Q 017788 174 DQNELKGIAEDALQKIQQK 192 (366)
Q Consensus 174 ~~n~l~~~~~~~~~~l~~L 192 (366)
++|.++++.+..+..++.|
T Consensus 189 ~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 189 DNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTC
T ss_pred CCCcCCcCCHHHhccccCC
Confidence 7666665555444444433
No 13
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=6.8e-19 Score=160.35 Aligned_cols=164 Identities=18% Similarity=0.075 Sum_probs=135.7
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
+.++++|++|+|++|.+.+..+. +.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..|..+..+++|+
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence 56789999999999999766665 89999999999999987766666789999999999999986655555678999999
Q ss_pred EEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC
Q 017788 90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD 169 (366)
Q Consensus 90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~ 169 (366)
+|++++|.+.+..+..++.+++|+.|++++|.+.+..|. .+.++++|+.|+++.|.+.+.. ..+.
T Consensus 161 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~l~~N~~~~~~-------~~l~ 225 (272)
T 3rfs_A 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG--------VFDRLTSLQYIWLHDNPWDCTC-------PGIR 225 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT--------TTTTCTTCCEEECCSSCBCCCT-------TTTH
T ss_pred EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH--------HHhCCcCCCEEEccCCCccccC-------cHHH
Confidence 999999988876777789999999999999976655544 4678899999999999887633 3466
Q ss_pred cccCChhhhhcchHHHHHHH
Q 017788 170 CLKLDQNELKGIAEDALQKI 189 (366)
Q Consensus 170 ~l~L~~n~l~~~~~~~~~~l 189 (366)
.+++..|.+.|.+|..++.+
T Consensus 226 ~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 226 YLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp HHHHHHHHTGGGBBCTTSCB
T ss_pred HHHHHHHhCCCcccCccccc
Confidence 77888888888777665433
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=4.6e-18 Score=154.61 Aligned_cols=162 Identities=16% Similarity=0.083 Sum_probs=137.3
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
+.++++|++|+|++|.+....+. |.++++|++|++++|.+....+..+..+++|++|+|++|.+.+..|..+..+++|+
T Consensus 57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 136 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136 (270)
T ss_dssp SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC
Confidence 66889999999999998654445 78999999999999977665556779999999999999997776677788999999
Q ss_pred EEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC
Q 017788 90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD 169 (366)
Q Consensus 90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~ 169 (366)
+|++++|.+....+..+..+++|+.|++++|.+....+. .+.++++|+.|+++.|.++...+..+..+..++
T Consensus 137 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG--------AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT--------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred EEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh--------HhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 999999987765556689999999999999965443333 467889999999999999987777788899999
Q ss_pred cccCChhhhhc
Q 017788 170 CLKLDQNELKG 180 (366)
Q Consensus 170 ~l~L~~n~l~~ 180 (366)
.+++++|++..
T Consensus 209 ~L~l~~N~~~c 219 (270)
T 2o6q_A 209 MLQLQENPWDC 219 (270)
T ss_dssp EEECCSSCBCC
T ss_pred EEEecCCCeeC
Confidence 99999999764
No 15
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=169.88 Aligned_cols=181 Identities=22% Similarity=0.221 Sum_probs=113.4
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
+.++++|++|+|++|.+....+. |.++++|++|+|++|.+....+..+..+++|++|+|++|.+....+..+..+++|+
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 163 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC
Confidence 56777888888888877554444 77888888888888765544445677788888888888775444444667777788
Q ss_pred EEEeeCCCCCCcchH-HHhccCCCcEEcccccccccccCCCC--CCccEEec-------------CCCcCCccccCcccc
Q 017788 90 RLYLSGCSNLRRIPE-SIINLSKLELLHLKNCSKLLSLPELP--CNLFSVGV-------------RRCTSLEALSSFSFL 153 (366)
Q Consensus 90 ~L~Ls~n~~~~~lp~-~i~~L~~L~~L~L~~n~~l~~lp~l~--~~L~~L~l-------------~~~~~L~~L~l~~n~ 153 (366)
+|++++|...+.++. .+.++++|+.|++++|. ++.+|.+. .+|+.|++ .++++|+.|+++.|.
T Consensus 164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp EEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence 888877666555554 56777777777777774 34555321 23333332 234455555566665
Q ss_pred cccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhh
Q 017788 154 FSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQK 192 (366)
Q Consensus 154 l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L 192 (366)
++...+..+..+..|+.|+|++|.++++.+..+..+++|
T Consensus 243 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 555555555555556666666666555554444444333
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.75 E-value=2.3e-19 Score=182.71 Aligned_cols=152 Identities=14% Similarity=0.198 Sum_probs=106.9
Q ss_pred CCC-CCCCCCCcEEecccCCCccc-----------------cCcccc--CCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 31 LPD-LSQARNLENLLLKACSSLVE-----------------THSSIQ--YLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 31 ~p~-l~~l~~L~~L~L~~n~~~~~-----------------~p~~i~--~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
+|. ++++++|++|+|++|.+.+. +|+.++ ++++|++|+|++|.+.+.+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 554 77788888888888876654 777777 8888888888888877888888888888888
Q ss_pred EEeeCCC-CCC-cchHHHhcc------CCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCC
Q 017788 91 LYLSGCS-NLR-RIPESIINL------SKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHND 162 (366)
Q Consensus 91 L~Ls~n~-~~~-~lp~~i~~L------~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~ 162 (366)
|++++|. +.+ .+|..++++ ++|++|++++|.+. .+|..- .+.++++|+.|+++.|.+.+.+| .+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~------~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVET------SLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHH------HHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchh------hhccCCCCCEEeCcCCcCccchh-hh
Confidence 8888887 665 678777776 78888888887554 666300 14556667777777777775566 66
Q ss_pred ceEEeCCcccCChhhhhcchHHHHHHHHh
Q 017788 163 QYFNLSDCLKLDQNELKGIAEDALQKIQQ 191 (366)
Q Consensus 163 ~~l~~l~~l~L~~n~l~~~~~~~~~~l~~ 191 (366)
+.+..++.+++++|.+. .+|..+.+++.
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 377 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTE 377 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECT
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcc
Confidence 67777777777777666 33443444333
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=169.29 Aligned_cols=113 Identities=21% Similarity=0.202 Sum_probs=72.4
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
+.++++|++|+|++|++....+. |.++++|++|+|++|.+....|..+..+++|++|+|++|.+.+..|..+..+++|+
T Consensus 76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155 (477)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence 34556666666666665433333 56666666666666665555566666677777777777665555556667777777
Q ss_pred EEEeeCCCCCCcchHHHhccCCCcEEcccccccc
Q 017788 90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKL 123 (366)
Q Consensus 90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l 123 (366)
+|++++|.+....+..+.++++|+.|++++|.+.
T Consensus 156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp EEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred EEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 7777777666555556667777777777666443
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=2.7e-18 Score=158.76 Aligned_cols=162 Identities=23% Similarity=0.156 Sum_probs=119.7
Q ss_pred CCCCCCCEEeccCCCCCCCCC--CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccC-ccchhcCCCCCC
Q 017788 12 KNLVNLKEIDLSYSRQLKKLP--DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN-RLPSSLCELISL 88 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~-~lp~~i~~l~~L 88 (366)
.++++|++|++++|.+.+..+ .+..+++|++|++++|...+..+..++.+++|++|++++|.+.+ .+|..+..+++|
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 456677777777777654443 37777777788877776666666677777888888888777555 467777778888
Q ss_pred cEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEE-e
Q 017788 89 QRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFN-L 167 (366)
Q Consensus 89 ~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~ 167 (366)
++|++++|.+.+..|..+..+++|+.|++++|.+.+..+. .+.++++|+.|+++.|.+.+..+..+..+. .
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF--------PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG--------GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh--------hccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence 8888888777666677777788888888887754433332 456778899999999999888888888774 8
Q ss_pred CCcccCChhhhhcc
Q 017788 168 SDCLKLDQNELKGI 181 (366)
Q Consensus 168 l~~l~L~~n~l~~~ 181 (366)
++.+++++|++.+.
T Consensus 250 L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 250 LAFLNLTQNDFACT 263 (306)
T ss_dssp CCEEECTTCCEECS
T ss_pred CCEEEccCCCeecc
Confidence 88999999988764
No 19
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=169.87 Aligned_cols=181 Identities=18% Similarity=0.112 Sum_probs=145.3
Q ss_pred CCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788 13 NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL 91 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L 91 (366)
-.++++.|+|++|++....+. |.++++|++|+|++|.+....+..+.++++|++|+|++|.+....+..+..+++|++|
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 346899999999999766655 9999999999999998777667889999999999999998655555578899999999
Q ss_pred EeeCCCCCCcchHHHhccCCCcEEcccccccccccCCC----CCCccEEecCC-----------CcCCccccCccccccc
Q 017788 92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL----PCNLFSVGVRR-----------CTSLEALSSFSFLFSA 156 (366)
Q Consensus 92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l----~~~L~~L~l~~-----------~~~L~~L~l~~n~l~~ 156 (366)
+|++|.+....+..+.++++|+.|++++|+.++.++.. ..+|+.|++++ +++|+.|+++.|.+++
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCc
Confidence 99999877666668999999999999998888877752 25666666543 4577777777777777
Q ss_pred CCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 157 MSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 157 ~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
..|..+..+..|+.|+|++|.++++.+.++.++++|+
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence 6677777777777788888777777776666666554
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=1.1e-18 Score=170.09 Aligned_cols=183 Identities=19% Similarity=0.169 Sum_probs=146.1
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCcc--ccCCcCCcEEecccccccCccchh-cCCCC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSS--IQYLSKLVTLDMRLCKNLNRLPSS-LCELI 86 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~--i~~L~~L~~L~L~~n~~~~~lp~~-i~~l~ 86 (366)
++++++|++|+|++|.+.+..|. +.++++|++|++++|.+.+..+.. ++.+++|++|+|++|.+.+..|.. +..++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 56789999999999999777675 999999999999999777655554 889999999999999977776776 78899
Q ss_pred CCcEEEeeCCCCCCcchHHHhcc----------------------------------CCCcEEcccccccccccCC----
Q 017788 87 SLQRLYLSGCSNLRRIPESIINL----------------------------------SKLELLHLKNCSKLLSLPE---- 128 (366)
Q Consensus 87 ~L~~L~Ls~n~~~~~lp~~i~~L----------------------------------~~L~~L~L~~n~~l~~lp~---- 128 (366)
+|++|++++|.+.+..|..+..+ ++|++|++++|.+.+..|.
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 99999999998877766655544 5788888888765432221
Q ss_pred --------------------------------------CCCCccEEec-------------CCCcCCccccCcccccccC
Q 017788 129 --------------------------------------LPCNLFSVGV-------------RRCTSLEALSSFSFLFSAM 157 (366)
Q Consensus 129 --------------------------------------l~~~L~~L~l-------------~~~~~L~~L~l~~n~l~~~ 157 (366)
...+++.|++ .++++|+.|+++.|.+.+.
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 0135666654 4578899999999999998
Q ss_pred CCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 158 SPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 158 ~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
.|..+..+..|+.+++++|.+.++.+..+.+++.|+
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence 888999999999999999999888888877777665
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=1.4e-18 Score=169.70 Aligned_cols=181 Identities=22% Similarity=0.203 Sum_probs=121.6
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
|.++++|++|+|++|.+.+..|. |.++++|++|+|++|.+....+..++.+++|++|+|++|.+....+..+..+++|+
T Consensus 95 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 174 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174 (452)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc
Confidence 56788889999998888665555 88888899999988866655555688888888888888885544444677888888
Q ss_pred EEEeeCCCCCCcchH-HHhccCCCcEEcccccccccccCCCC--CCccEEec-------------CCCcCCccccCcccc
Q 017788 90 RLYLSGCSNLRRIPE-SIINLSKLELLHLKNCSKLLSLPELP--CNLFSVGV-------------RRCTSLEALSSFSFL 153 (366)
Q Consensus 90 ~L~Ls~n~~~~~lp~-~i~~L~~L~~L~L~~n~~l~~lp~l~--~~L~~L~l-------------~~~~~L~~L~l~~n~ 153 (366)
+|++++|...+.+|. .+.++++|+.|++++|.+ ..+|.+. .+|+.|++ .++++|+.|+++.|.
T Consensus 175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp EEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred EEeCCCCCCccccChhhccCCCCCCEEECCCCcc-cccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence 888888766666654 477788888888888744 4455322 34444443 234556666666666
Q ss_pred cccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhh
Q 017788 154 FSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQK 192 (366)
Q Consensus 154 l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L 192 (366)
+.+..+..+..+..|+.++|++|.++++.+..+..+++|
T Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 665555556666666666666666665555444444433
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=1.5e-18 Score=169.54 Aligned_cols=180 Identities=18% Similarity=0.072 Sum_probs=136.3
Q ss_pred CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788 14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY 92 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~ 92 (366)
.++|++|+|++|.+.+..|+ |.++++|++|+|++|.+.+..+..+.++++|++|+|++|.+....+..+..+++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 46899999999999776665 99999999999999988777778999999999999999996655555688999999999
Q ss_pred eeCCCCCCcchHHHhccCCCcEEcccccccccccCCC----CCCccEEecCC-----------CcCCccccCcccccccC
Q 017788 93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL----PCNLFSVGVRR-----------CTSLEALSSFSFLFSAM 157 (366)
Q Consensus 93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l----~~~L~~L~l~~-----------~~~L~~L~l~~n~l~~~ 157 (366)
|++|.+....+..+.++++|+.|++++|+.++.+|.. ..+|+.|++++ +++|+.|+++.|.+++.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCccc
Confidence 9999877655668999999999999998888887752 23455554432 34556666666666655
Q ss_pred CCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 158 SPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 158 ~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
.|..+..+..|+.+++++|.++++.+.++..+++|+
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 555566666666666666666655555554444443
No 23
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=3.8e-18 Score=147.87 Aligned_cols=156 Identities=18% Similarity=0.119 Sum_probs=133.6
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
.+.+++|++|++++|.+. .+|.+..+++|++|++++|. +..+ +.+..+++|++|++++|.+.+..|..++.+++|++
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhhcCCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 456789999999999985 67789999999999999993 3443 47899999999999999987778899999999999
Q ss_pred EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788 91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC 170 (366)
Q Consensus 91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~ 170 (366)
|++++|.+....|..+..+++|++|++++|..++.+| .+.++++|+.|+++.|.++. ++ .+..+..++.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---------~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---------PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQ 185 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---------GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCE
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---------hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCE
Confidence 9999999888889999999999999999997567765 46788999999999999987 44 7788999999
Q ss_pred ccCChhhhhc
Q 017788 171 LKLDQNELKG 180 (366)
Q Consensus 171 l~L~~n~l~~ 180 (366)
+++++|++.+
T Consensus 186 L~l~~N~i~~ 195 (197)
T 4ezg_A 186 LYAFSQTIGG 195 (197)
T ss_dssp EEECBC----
T ss_pred EEeeCcccCC
Confidence 9999998753
No 24
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=1.5e-18 Score=158.11 Aligned_cols=170 Identities=16% Similarity=0.056 Sum_probs=113.7
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
+.++++|++|+|++|.+.+..+. +.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 127 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence 55677888888888877554443 77888888888888866666667778888888888888875555454677888888
Q ss_pred EEEeeCCCCCC-cchHHHhccCCCcEEcccccccccccCCCC---CCcc----EEecCC------------CcCCccccC
Q 017788 90 RLYLSGCSNLR-RIPESIINLSKLELLHLKNCSKLLSLPELP---CNLF----SVGVRR------------CTSLEALSS 149 (366)
Q Consensus 90 ~L~Ls~n~~~~-~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~---~~L~----~L~l~~------------~~~L~~L~l 149 (366)
+|++++|.+.. .+|..+.++++|++|++++|++.+..+... .+++ .|++++ ..+|+.|++
T Consensus 128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L 207 (276)
T 2z62_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207 (276)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEEC
T ss_pred EEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEEC
Confidence 88888887665 367888888888888888875543322211 1122 233322 225666666
Q ss_pred cccccccCCCCCCceEEeCCcccCChhhhhc
Q 017788 150 FSFLFSAMSPHNDQYFNLSDCLKLDQNELKG 180 (366)
Q Consensus 150 ~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~ 180 (366)
+.|.+++..+..+..+..++.+++++|++.+
T Consensus 208 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 208 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCCceeecCHhHhcccccccEEEccCCcccc
Confidence 6666666544555666666666777666664
No 25
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=3.4e-18 Score=149.23 Aligned_cols=164 Identities=15% Similarity=0.048 Sum_probs=113.9
Q ss_pred eeccCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCC
Q 017788 8 FLILKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELI 86 (366)
Q Consensus 8 ~l~l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~ 86 (366)
.+...-.++|++|++++|.+.+..+. +.++++|++|++++|.+....+..+..+++|++|+|++|.+.+..+..+..++
T Consensus 21 ~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 100 (208)
T 2o6s_A 21 SVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100 (208)
T ss_dssp SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc
Confidence 33344456788888888888654444 77888888888888866544444567888888888888885544444567888
Q ss_pred CCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEE
Q 017788 87 SLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFN 166 (366)
Q Consensus 87 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 166 (366)
+|++|++++|.+.+..+..+.++++|++|++++|.+. .+|.. .+.++++|+.|+++.|.+.+ .+.
T Consensus 101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~-------~~~~l~~L~~L~l~~N~~~~-------~~~ 165 (208)
T 2o6s_A 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDG-------VFDRLTSLQYIWLHDNPWDC-------TCP 165 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTT-------TTTTCTTCCEEECCSCCBCC-------CTT
T ss_pred CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHH-------HhccCCCccEEEecCCCeec-------CCC
Confidence 8888888888776655556788888888888888554 34431 35667778888888776665 223
Q ss_pred eCCcccCChhhhhcchHHHH
Q 017788 167 LSDCLKLDQNELKGIAEDAL 186 (366)
Q Consensus 167 ~l~~l~L~~n~l~~~~~~~~ 186 (366)
.++.+++..|.++|.+|..+
T Consensus 166 ~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 166 GIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp TTHHHHHHHHHCTTTBBCTT
T ss_pred CHHHHHHHHHhCCceeeccC
Confidence 45566666677766665444
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.73 E-value=4.4e-18 Score=171.81 Aligned_cols=182 Identities=19% Similarity=0.102 Sum_probs=123.7
Q ss_pred cCCCCCCCEEeccCCCCCCCC--CC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchh-cCCCC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKL--PD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS-LCELI 86 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~--p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~-i~~l~ 86 (366)
+.++++|++|++++|.+.+.. |. +.++++|++|++++|...+..|..++.+++|++|++++|.+.+..|.. +..++
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 456788888888888876553 43 788888888888888777777778888888888888888866655543 77888
Q ss_pred CCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccc-cCC-----CCCCccEEec-------------CCCcCCccc
Q 017788 87 SLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLS-LPE-----LPCNLFSVGV-------------RRCTSLEAL 147 (366)
Q Consensus 87 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~-lp~-----l~~~L~~L~l-------------~~~~~L~~L 147 (366)
+|++|++++|.+.+..|..+..+++|+.|++++|++.+. +|. ..++|+.|++ .++++|+.|
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 888888888887777777788888888888888866542 221 0123333332 234556666
Q ss_pred cCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 148 SSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 148 ~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
+++.|.+++..|..+..+..+ .+++++|.++++.|..+..++.|+
T Consensus 506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~ 550 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR 550 (606)
T ss_dssp ECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred ECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCC
Confidence 666666655555555555555 566666666665555555555553
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=1.1e-17 Score=156.50 Aligned_cols=177 Identities=15% Similarity=0.079 Sum_probs=136.8
Q ss_pred CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788 14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY 92 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~ 92 (366)
.++|++|+|++|.+.+..|. +.++++|++|++++|.+.+..|..++.+++|++|++++|. +..+|..+. ++|++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELR 129 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEE
Confidence 45799999999998666564 9999999999999998777778889999999999999998 557787764 8999999
Q ss_pred eeCCCCCCcchHHHhccCCCcEEccccccccc--ccCCCCC--CccEEecCCC----------cCCccccCcccccccCC
Q 017788 93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLL--SLPELPC--NLFSVGVRRC----------TSLEALSSFSFLFSAMS 158 (366)
Q Consensus 93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~--~lp~l~~--~L~~L~l~~~----------~~L~~L~l~~n~l~~~~ 158 (366)
+++|.+....+..+.++++|+.|++++|.+.. ..|.... +|+.|++.++ ++|+.|+++.|.+.+..
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~ 209 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIE 209 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccC
Confidence 99998776666678999999999999986632 3333221 4555555442 47888888888888766
Q ss_pred CCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 159 PHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 159 ~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
+..+..+..++.+++++|.+.++.+..+..+++|+
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 244 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCC
T ss_pred HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCC
Confidence 67778888888888888888877766665555553
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=1.2e-17 Score=156.17 Aligned_cols=176 Identities=15% Similarity=0.095 Sum_probs=123.9
Q ss_pred CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788 14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY 92 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~ 92 (366)
.++|++|+|++|.+.+..+. +.++++|++|++++|.+.+..|..++.+++|++|++++|. ++.+|..+. ++|++|+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELR 127 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEE
Confidence 35788999999988666554 8889999999999887776668888899999999999888 556777654 7888888
Q ss_pred eeCCCCCCcchHHHhccCCCcEEccccccccc--ccCCC---CCCccEEecCCC----------cCCccccCcccccccC
Q 017788 93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLL--SLPEL---PCNLFSVGVRRC----------TSLEALSSFSFLFSAM 157 (366)
Q Consensus 93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~--~lp~l---~~~L~~L~l~~~----------~~L~~L~l~~n~l~~~ 157 (366)
+++|.+.+..+..+.++++|+.|++++|.... ..+.. ..+|+.|++.++ ++|+.|+++.|.+++.
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV 207 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEE
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCcc
Confidence 88888776667778888888888888886532 33321 134455544432 4566666666666665
Q ss_pred CCCCCceEEeCCcccCChhhhhcchHHHHHHHHhh
Q 017788 158 SPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQK 192 (366)
Q Consensus 158 ~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L 192 (366)
.+..+..+..++.+++++|.+++..+..+..+++|
T Consensus 208 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 242 (330)
T 1xku_A 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242 (330)
T ss_dssp CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence 55566666666666776666666555444444444
No 29
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=1.5e-17 Score=151.53 Aligned_cols=146 Identities=18% Similarity=0.121 Sum_probs=115.8
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccC-ccchhcCCCCCC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN-RLPSSLCELISL 88 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~-~lp~~i~~l~~L 88 (366)
++++++|++|+|++|.+.+..+. +.++++|++|++++|.+.+..+..++.+++|++|++++|.+.. .+|..+..+++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L 151 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC
Confidence 56789999999999999766665 9999999999999997766666679999999999999999655 478999999999
Q ss_pred cEEEeeCCCCCCcchHHHhccCCCc----EEcccccccccccCCCC--CCccEEecC-------------CCcCCccccC
Q 017788 89 QRLYLSGCSNLRRIPESIINLSKLE----LLHLKNCSKLLSLPELP--CNLFSVGVR-------------RCTSLEALSS 149 (366)
Q Consensus 89 ~~L~Ls~n~~~~~lp~~i~~L~~L~----~L~L~~n~~l~~lp~l~--~~L~~L~l~-------------~~~~L~~L~l 149 (366)
++|++++|.+.+..+..+..+.+|+ .|++++|.+....+... .+|+.|+++ ++++|+.|++
T Consensus 152 ~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 9999999988776677777777776 78888886543333222 256666654 4667888888
Q ss_pred ccccccc
Q 017788 150 FSFLFSA 156 (366)
Q Consensus 150 ~~n~l~~ 156 (366)
+.|.+..
T Consensus 232 ~~N~~~c 238 (276)
T 2z62_A 232 HTNPWDC 238 (276)
T ss_dssp CSSCBCC
T ss_pred cCCcccc
Confidence 8887765
No 30
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=8.8e-18 Score=151.11 Aligned_cols=168 Identities=18% Similarity=0.170 Sum_probs=142.7
Q ss_pred CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEe
Q 017788 15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL 93 (366)
Q Consensus 15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~L 93 (366)
...++++++++.+ ..+|. +. ++|+.|+|++|.+.+..+..++.+++|++|+|++|.+.+..|..+..+++|++|+|
T Consensus 14 ~~~~~l~~~~~~l-~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSL-DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCC-SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCc-cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 3578899999988 45664 54 68999999999888777778999999999999999987777778899999999999
Q ss_pred eCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccC
Q 017788 94 SGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKL 173 (366)
Q Consensus 94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L 173 (366)
++|.+....+..+..+++|++|++++|.+. .+|.. .+.++++|+.|+++.|.+++..+..++.+..++.++|
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSG-------VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTT-------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCC-CcChh-------HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence 999888777778899999999999999654 44431 3578899999999999999977778999999999999
Q ss_pred ChhhhhcchHHHHHHHHhhh
Q 017788 174 DQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 174 ~~n~l~~~~~~~~~~l~~L~ 193 (366)
++|.++++.+..+.+++.|+
T Consensus 163 ~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 163 STNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp CSSCCSCCCTTTTTTCTTCC
T ss_pred CCCcCCccCHHHHhCCCCCC
Confidence 99999988877776666554
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.72 E-value=1.1e-17 Score=160.10 Aligned_cols=180 Identities=14% Similarity=0.053 Sum_probs=129.7
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchh-cCCCCCC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS-LCELISL 88 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~-i~~l~~L 88 (366)
++++++|++|+|++|.+.+..+. +.++++|++|++++|.+.+..|..++.+++|++|+|++|.+ ..+|.. +..+++|
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKL 143 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc-CcCCHHHhcCCCCC
Confidence 34678899999998888655553 88889999999998877666667788889999999998884 456654 5788889
Q ss_pred cEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCC-------------------CCccEEecCCC--------
Q 017788 89 QRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELP-------------------CNLFSVGVRRC-------- 141 (366)
Q Consensus 89 ~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~-------------------~~L~~L~l~~~-------- 141 (366)
++|++++|.+.+..|..+.++++|++|++++|.+...-.... .+++.|++.++
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~ 223 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 223 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccc
Confidence 999999888777667778888888888888886543211112 23444444332
Q ss_pred --cCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 142 --TSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 142 --~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
++|+.|+++.|.+++. ..+..+..++.+++++|.++++.|..+.++++|+
T Consensus 224 ~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 224 VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275 (390)
T ss_dssp CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCC
Confidence 3566777777766652 3566777788888888888877777776666665
No 32
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=1.6e-18 Score=160.35 Aligned_cols=172 Identities=13% Similarity=0.098 Sum_probs=91.9
Q ss_pred CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCcc--ccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLV--ETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~--~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
.++|++|+|++|.+....+. +.++++|++|++++|.+.. ..+..+..+++|++|+|++|. +..+|..+..+++|++
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEH 105 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCE
Confidence 35677777777776432223 6677777777777765432 124455556666666666665 3345555666666666
Q ss_pred EEeeCCCCCCcch-HHHhccCCCcEEcccccccccccCCCC---CCccEE--------------ecCCCcCCccccCccc
Q 017788 91 LYLSGCSNLRRIP-ESIINLSKLELLHLKNCSKLLSLPELP---CNLFSV--------------GVRRCTSLEALSSFSF 152 (366)
Q Consensus 91 L~Ls~n~~~~~lp-~~i~~L~~L~~L~L~~n~~l~~lp~l~---~~L~~L--------------~l~~~~~L~~L~l~~n 152 (366)
|++++|.+.+..+ ..+..+++|++|++++|.+....|... .+|+.| .+.++++|+.|+++.|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 6666665443322 345566666666666665444444311 111111 2333445555555555
Q ss_pred ccccCCCCCCceEEeCCcccCChhhhhcchHHHH
Q 017788 153 LFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDAL 186 (366)
Q Consensus 153 ~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~ 186 (366)
.+++..|..+..+..++.+++++|.++++.+..+
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 5555445555555555555555555554443333
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=1.1e-17 Score=169.11 Aligned_cols=180 Identities=14% Similarity=0.047 Sum_probs=126.6
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchh-cCCCCCC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS-LCELISL 88 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~-i~~l~~L 88 (366)
+.++++|++|+|++|.+.+..|. |+.+++|++|+|++|.+.+..|..++++++|++|+|++|.+. .+|.. ++.+++|
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L 149 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 149 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCC
Confidence 34578899999999888766664 888999999999988776666667788999999999988854 45544 5788999
Q ss_pred cEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCC-------------------ccEEecCCC--------
Q 017788 89 QRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCN-------------------LFSVGVRRC-------- 141 (366)
Q Consensus 89 ~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~-------------------L~~L~l~~~-------- 141 (366)
++|+|++|.+.+..|..++++++|++|++++|.+...-+...++ |+.|+++++
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence 99999998887777778888889999999888654322122223 333333322
Q ss_pred --cCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 142 --TSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 142 --~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
++|+.|+++.|.+++ +..+..+..|..|+|++|.+.++.|..+..++.|+
T Consensus 230 ~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 281 (597)
T 3oja_B 230 VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281 (597)
T ss_dssp CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCC
Confidence 245556666665554 24455666777777777777777666666666554
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1.6e-18 Score=181.06 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=97.1
Q ss_pred cCCCCCCCEEeccCCCCCC-----------------CCCC-CC--CCCCCcEEecccCCCccccCccccCCcCCcEEecc
Q 017788 11 LKNLVNLKEIDLSYSRQLK-----------------KLPD-LS--QARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~-----------------~~p~-l~--~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~ 70 (366)
++++++|++|+|++|.+.+ .+|. ++ ++++|++|+|++|...+.+|..++++++|++|+|+
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 4455666666666666655 1443 44 66666666666666666666666666666666666
Q ss_pred ccc-ccC-ccchhcCCCC-------CCcEEEeeCCCCCCcchH--HHhccCCCcEEcccccccccccCCCCCCccEEecC
Q 017788 71 LCK-NLN-RLPSSLCELI-------SLQRLYLSGCSNLRRIPE--SIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVR 139 (366)
Q Consensus 71 ~n~-~~~-~lp~~i~~l~-------~L~~L~Ls~n~~~~~lp~--~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~ 139 (366)
+|+ +.+ .+|..++.++ +|++|+|++|.+. .+|. .++++++|+.|++++|.+. .+| .+.
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp---------~~~ 592 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE---------AFG 592 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC---------CCC
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch---------hhc
Confidence 665 444 4555444433 6666666666555 5665 6666666666666666443 444 345
Q ss_pred CCcCCccccCcccccccCCCCCCceEEe-CCcccCChhhhh
Q 017788 140 RCTSLEALSSFSFLFSAMSPHNDQYFNL-SDCLKLDQNELK 179 (366)
Q Consensus 140 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~-l~~l~L~~n~l~ 179 (366)
++++|+.|+++.|.+. .+|..+..+.. |+.|++++|.+.
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 5667777777777777 36666777777 777777777766
No 35
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=4.4e-18 Score=158.08 Aligned_cols=164 Identities=19% Similarity=0.193 Sum_probs=82.0
Q ss_pred CCCCCCEEeccCCCCCCCCCC-C--CCCCCCcEEecccCCCccccCccccCC-----cCCcEEecccccccCccchhcCC
Q 017788 13 NLVNLKEIDLSYSRQLKKLPD-L--SQARNLENLLLKACSSLVETHSSIQYL-----SKLVTLDMRLCKNLNRLPSSLCE 84 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~-l--~~l~~L~~L~L~~n~~~~~~p~~i~~L-----~~L~~L~L~~n~~~~~lp~~i~~ 84 (366)
++++|++|+|++|++.+.+|. + ..+++|++|+|++|.+.+. |..++.+ ++|++|+|++|.+.+..|..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 355566666666655555553 3 5555666666665544333 4444444 55555555555544444455555
Q ss_pred CCCCcEEEeeCCCCCCc--chHHH--hccCCCcEEcccccccccccCCC-------CCCccEEe--------------cC
Q 017788 85 LISLQRLYLSGCSNLRR--IPESI--INLSKLELLHLKNCSKLLSLPEL-------PCNLFSVG--------------VR 139 (366)
Q Consensus 85 l~~L~~L~Ls~n~~~~~--lp~~i--~~L~~L~~L~L~~n~~l~~lp~l-------~~~L~~L~--------------l~ 139 (366)
+++|++|++++|.+.+. +|..+ .++++|++|++++|++. .++.. ..+|+.|+ +.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME-TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC-CHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc-chHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 55555555555544433 23333 45555555555555332 11110 01122221 22
Q ss_pred CCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcc
Q 017788 140 RCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGI 181 (366)
Q Consensus 140 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~ 181 (366)
.+++|+.|+++.|.++. +|..+. ..++.+++++|.+++.
T Consensus 251 ~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp CCTTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCSC
T ss_pred hcCCCCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCCC
Confidence 34566666666666664 444443 4555666666666654
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=164.40 Aligned_cols=175 Identities=18% Similarity=0.188 Sum_probs=104.0
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
+.++++|++|+|++|.+.+..|. |.++++|+.|++++|.+....+..+..+++|+.|+|++|.+.+..+..+..+++|+
T Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 203 (477)
T 2id5_A 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203 (477)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC
T ss_pred ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc
Confidence 34567777888877777555554 77777777777777755444334456666666666666654444344455555555
Q ss_pred EEEeeCCCCCCcch------------------------HHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCc
Q 017788 90 RLYLSGCSNLRRIP------------------------ESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLE 145 (366)
Q Consensus 90 ~L~Ls~n~~~~~lp------------------------~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~ 145 (366)
.|++++|...+.+| ..+.++++|+.|++++|.+.+..+. .+.++++|+
T Consensus 204 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~~l~~L~ 275 (477)
T 2id5_A 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS--------MLHELLRLQ 275 (477)
T ss_dssp EEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT--------SCTTCTTCC
T ss_pred eeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh--------hccccccCC
Confidence 55555444433333 3455666666666666544332222 234456667
Q ss_pred cccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 146 ALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 146 ~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
.|+++.|.+.+..|..+..+..|+.+++++|.++++.+..+..+++|+
T Consensus 276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323 (477)
T ss_dssp EEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred EEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccC
Confidence 777777776666666666666777777777776666655555555544
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=175.37 Aligned_cols=183 Identities=17% Similarity=0.129 Sum_probs=115.8
Q ss_pred cCCCCCCCEEeccCCCCCCCC-CC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchh--cCCCC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKL-PD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS--LCELI 86 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~-p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~--i~~l~ 86 (366)
++++++|++|+|++|...+.+ |. |.++++|++|+|++|.+.+..|..++++++|++|+|++|.+.+.+|.. +..++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 566777777777777555555 33 777777777777777666666777777777777777777765555554 66777
Q ss_pred CCcEEEeeCCCCCCcch-HHHhccCCCcEEcccccccccccCCC--------------------------C---------
Q 017788 87 SLQRLYLSGCSNLRRIP-ESIINLSKLELLHLKNCSKLLSLPEL--------------------------P--------- 130 (366)
Q Consensus 87 ~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~L~~n~~l~~lp~l--------------------------~--------- 130 (366)
+|++|+|++|.+.+..| ..++++++|++|++++|.+.+..|.. .
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence 77777777776655433 45667777777777666543222110 0
Q ss_pred CCccEEecCCC---------------------------------------------------cCCccccCcccccccCCC
Q 017788 131 CNLFSVGVRRC---------------------------------------------------TSLEALSSFSFLFSAMSP 159 (366)
Q Consensus 131 ~~L~~L~l~~~---------------------------------------------------~~L~~L~l~~n~l~~~~~ 159 (366)
.+|+.|+++++ ++|+.|+++.|.+.+..+
T Consensus 204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 01445554432 456666666776666666
Q ss_pred CCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 160 HNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 160 ~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
..++.+..++.++|++|.+.++.+.++..+++|+
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 6677777777777777777776666666655554
No 38
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=4.8e-17 Score=149.67 Aligned_cols=155 Identities=22% Similarity=0.088 Sum_probs=91.5
Q ss_pred CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEe
Q 017788 15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL 93 (366)
Q Consensus 15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~L 93 (366)
+++++|+|++|.+.+..+. +.++++|++|+|++|.+. .++.. +.+++|++|+|++|. +..+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEEC
Confidence 4567777777776544443 667777777777776443 33332 566677777777666 4466666666777777777
Q ss_pred eCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccC
Q 017788 94 SGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKL 173 (366)
Q Consensus 94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L 173 (366)
++|.+.+..|..|.++++|+.|++++|.+. .+|.. .+..+++|+.|+++.|+++...+..+..+..++.++|
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~-------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPG-------LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTT-------TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChh-------hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence 776665544556666777777777776443 33321 2344555555555555555544444455555555555
Q ss_pred Chhhhhc
Q 017788 174 DQNELKG 180 (366)
Q Consensus 174 ~~n~l~~ 180 (366)
++|.++.
T Consensus 180 ~~N~l~~ 186 (290)
T 1p9a_G 180 QENSLYT 186 (290)
T ss_dssp CSSCCCC
T ss_pred CCCcCCc
Confidence 5555553
No 39
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=1.9e-17 Score=152.27 Aligned_cols=169 Identities=17% Similarity=0.136 Sum_probs=108.4
Q ss_pred cCCCCCCCEEeccCCCCCCCCC-CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLP-DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
+++++++++++++++.+. .+| .+. ++++.|+|++|.+.+..+..+..+++|++|+|++|. +..+|.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCC
Confidence 345667777777776663 444 343 567777777776655556667777777777777776 3344433 5677777
Q ss_pred EEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC
Q 017788 90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD 169 (366)
Q Consensus 90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~ 169 (366)
+|++++|.+. .+|..+..+++|+.|++++|++.+..|. .+.++++|+.|+++.|.++...+..+..+..++
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG--------ALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSS--------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHH--------HHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 7777776544 5666667777777777777754333223 456667777777777777765555666677777
Q ss_pred cccCChhhhhcchHHHHHHHHhhh
Q 017788 170 CLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 170 ~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
.|+|++|.++++.+..+.++++|+
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLD 175 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCC
T ss_pred EEECCCCcCCccCHHHhcCcCCCC
Confidence 777777777766665555555554
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.70 E-value=2.3e-17 Score=154.22 Aligned_cols=178 Identities=19% Similarity=0.136 Sum_probs=144.4
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
++++++|++|+|++|.+.+..|. +.++++|++|++++|.+ ..+|..+. ++|++|++++|.+.+..+..+..+++|+
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI 148 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC-CccChhhc--ccccEEECCCCcccccCHhHhcCCcccc
Confidence 67899999999999999777675 99999999999999854 56776654 7999999999997766667788999999
Q ss_pred EEEeeCCCCCC--cchHHHhccCCCcEEcccccccccccCC-CCCCccEEecC-------------CCcCCccccCcccc
Q 017788 90 RLYLSGCSNLR--RIPESIINLSKLELLHLKNCSKLLSLPE-LPCNLFSVGVR-------------RCTSLEALSSFSFL 153 (366)
Q Consensus 90 ~L~Ls~n~~~~--~lp~~i~~L~~L~~L~L~~n~~l~~lp~-l~~~L~~L~l~-------------~~~~L~~L~l~~n~ 153 (366)
+|++++|.+.. ..+..+.++++|+.|++++|.+ +.+|. .+.+|+.|+++ ++++|+.|+++.|.
T Consensus 149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 99999997753 6678899999999999999865 44553 34677777654 46789999999999
Q ss_pred cccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 154 FSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 154 l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
+++..+..+..+..++.+++++|.+.. +|..+..++.|+
T Consensus 228 l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~ 266 (330)
T 1xku_A 228 ISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQ 266 (330)
T ss_dssp CCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCC
T ss_pred CceeChhhccCCCCCCEEECCCCcCcc-CChhhccCCCcC
Confidence 998777788899999999999999884 344444444443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=3.3e-17 Score=165.52 Aligned_cols=167 Identities=15% Similarity=0.058 Sum_probs=109.6
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
++++++|++|+|++|.+.+..|. |+++++|++|+|++|.+....+..++.+++|++|+|++|.+.+..|..++.+++|+
T Consensus 95 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 174 (597)
T 3oja_B 95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence 56788999999999998777776 89999999999999966544344468999999999999998777777899999999
Q ss_pred EEEeeCCCCCCcchHHHhccCCC-------------------cEEcccccccccccCCCCCCccEEecC-----------
Q 017788 90 RLYLSGCSNLRRIPESIINLSKL-------------------ELLHLKNCSKLLSLPELPCNLFSVGVR----------- 139 (366)
Q Consensus 90 ~L~Ls~n~~~~~lp~~i~~L~~L-------------------~~L~L~~n~~l~~lp~l~~~L~~L~l~----------- 139 (366)
+|++++|.+.+.- ++.+++| +.|++++|.+....+..+.+|+.|+++
T Consensus 175 ~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~ 251 (597)
T 3oja_B 175 NLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL 251 (597)
T ss_dssp EEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGG
T ss_pred EEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhc
Confidence 9999999766432 2233333 333333333222222233445554433
Q ss_pred CCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhc
Q 017788 140 RCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG 180 (366)
Q Consensus 140 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~ 180 (366)
++++|+.|+++.|.+.+..|..++.+..|..|+|++|.+.+
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 292 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence 23455555555555555445455555555555555554443
No 42
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=6.1e-18 Score=172.14 Aligned_cols=174 Identities=16% Similarity=0.211 Sum_probs=134.6
Q ss_pred cCCCCCCCEEeccCCCCCCC-----------------CCC-CC--CCCCCcEEecccCCCccccCccccCCcCCcEEecc
Q 017788 11 LKNLVNLKEIDLSYSRQLKK-----------------LPD-LS--QARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~-----------------~p~-l~--~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~ 70 (366)
++++++|++|+|++|.+.+. +|. ++ ++++|++|+|++|...+.+|..++++++|++|+|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 77899999999999999874 775 88 99999999999999999999999999999999999
Q ss_pred ccc-ccC-ccchhcCCC------CCCcEEEeeCCCCCCcchH--HHhccCCCcEEcccccccccccCCCC--CCccEEec
Q 017788 71 LCK-NLN-RLPSSLCEL------ISLQRLYLSGCSNLRRIPE--SIINLSKLELLHLKNCSKLLSLPELP--CNLFSVGV 138 (366)
Q Consensus 71 ~n~-~~~-~lp~~i~~l------~~L~~L~Ls~n~~~~~lp~--~i~~L~~L~~L~L~~n~~l~~lp~l~--~~L~~L~l 138 (366)
+|+ +.+ .+|..++.+ ++|++|++++|.+. .+|. .++++++|++|++++|.+.+.+|.+. .+|+.|++
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L 360 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNL 360 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEEC
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEEC
Confidence 998 777 899988876 99999999999877 8998 99999999999999998777888321 23444443
Q ss_pred CC------------CcC-CccccCcccccccCCCCCCceEE--eCCcccCChhhhhcchHHHH
Q 017788 139 RR------------CTS-LEALSSFSFLFSAMSPHNDQYFN--LSDCLKLDQNELKGIAEDAL 186 (366)
Q Consensus 139 ~~------------~~~-L~~L~l~~n~l~~~~~~~~~~l~--~l~~l~L~~n~l~~~~~~~~ 186 (366)
++ +++ |+.|+++.|.++. +|..+..+. .++.+++++|.+.+..|..+
T Consensus 361 ~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp CSSEEEECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred CCCccccccHhhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence 32 334 5666666666553 454444333 45555666666655544433
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.70 E-value=9.4e-18 Score=169.41 Aligned_cols=178 Identities=20% Similarity=0.173 Sum_probs=135.4
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC--CCCCCCCcEEecccCCCcccc--CccccCCcCCcEEecccccccCccchhcCCCC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVET--HSSIQYLSKLVTLDMRLCKNLNRLPSSLCELI 86 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~n~~~~~~--p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~ 86 (366)
+.++++|++|++++|.+.+.+|. +.++++|++|++++|.+.+.. +..++.+++|++|++++|.+.+..|..+..++
T Consensus 321 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 400 (606)
T 3t6q_A 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400 (606)
T ss_dssp GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT
T ss_pred hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc
Confidence 45789999999999998877763 899999999999999776655 77899999999999999998888888999999
Q ss_pred CCcEEEeeCCCCCCcchH-HHhccCCCcEEcccccccccccCCCC---CCccEEecCC----------------CcCCcc
Q 017788 87 SLQRLYLSGCSNLRRIPE-SIINLSKLELLHLKNCSKLLSLPELP---CNLFSVGVRR----------------CTSLEA 146 (366)
Q Consensus 87 ~L~~L~Ls~n~~~~~lp~-~i~~L~~L~~L~L~~n~~l~~lp~l~---~~L~~L~l~~----------------~~~L~~ 146 (366)
+|++|++++|.+.+..|. .+.++++|+.|++++|.+....|... ++|++|++++ +++|+.
T Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 999999999988776654 48899999999999998776666522 3444444332 345556
Q ss_pred ccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHH
Q 017788 147 LSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQK 188 (366)
Q Consensus 147 L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~ 188 (366)
|+++.|.+++..|..+..+..++.+++++|.+++..|..+.+
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 522 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT
T ss_pred EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCc
Confidence 666666665555555566666666666666665555544433
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=156.26 Aligned_cols=173 Identities=21% Similarity=0.140 Sum_probs=141.9
Q ss_pred CCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788 13 NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL 91 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L 91 (366)
-.++|++|++++|.+.+..+. +.++++|++|++++|.+.+..|..++.+++|++|+|++|.+.+..+..+..+++|++|
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 345899999999998655553 9999999999999997776667789999999999999998554444448899999999
Q ss_pred EeeCCCCCCcchH--HHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC
Q 017788 92 YLSGCSNLRRIPE--SIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD 169 (366)
Q Consensus 92 ~Ls~n~~~~~lp~--~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~ 169 (366)
++++|.+. .+|. .+.++++|++|++++|..++.++.. .+.++++|+.|+++.|.+.+..|..+..+..++
T Consensus 130 ~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 201 (353)
T 2z80_A 130 NLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRK-------DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201 (353)
T ss_dssp ECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTT-------TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred ECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHH-------HccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence 99999766 5655 7889999999999998655555421 577889999999999999998899999999999
Q ss_pred cccCChhhhhcchHHHHHHHHhhh
Q 017788 170 CLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 170 ~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
.+++++|.+..+.+..+..++.|+
T Consensus 202 ~L~l~~n~l~~~~~~~~~~~~~L~ 225 (353)
T 2z80_A 202 HLILHMKQHILLLEIFVDVTSSVE 225 (353)
T ss_dssp EEEEECSCSTTHHHHHHHHTTTEE
T ss_pred eecCCCCccccchhhhhhhccccc
Confidence 999999998766665565566665
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.70 E-value=2.3e-17 Score=166.54 Aligned_cols=174 Identities=18% Similarity=0.077 Sum_probs=88.0
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
++++++|++|+|++|.+.+..|+ |.++++|++|+|++|.+.+..|.+++++++|++|+|++|.+.+..|..++++++|+
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCC
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCC
Confidence 33445555555555554433343 45555555555555544443444555555555555555553333334455555555
Q ss_pred EEEeeCCCCCC-cchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCc----cccCcccccccCCCCCCce
Q 017788 90 RLYLSGCSNLR-RIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLE----ALSSFSFLFSAMSPHNDQY 164 (366)
Q Consensus 90 ~L~Ls~n~~~~-~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~----~L~l~~n~l~~~~~~~~~~ 164 (366)
+|++++|.+.+ .+|..++++++|++|++++|.+.+..|. .+..+++|+ .++++.|.+++..+..+..
T Consensus 132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~ 203 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN--------DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203 (606)
T ss_dssp EEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT--------TTHHHHHCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred EEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh--------hhhhhhccccccceeeccCCCcceeCcccccC
Confidence 55555554433 3455555555555555555543333332 222333332 5666666666644444443
Q ss_pred EEeCCcccCChhhhh-cchHHHHHHHHhhh
Q 017788 165 FNLSDCLKLDQNELK-GIAEDALQKIQQKA 193 (366)
Q Consensus 165 l~~l~~l~L~~n~l~-~~~~~~~~~l~~L~ 193 (366)
. .++.+++++|.+. +..+..+.+++.++
T Consensus 204 ~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 232 (606)
T 3vq2_A 204 I-KLHELTLRGNFNSSNIMKTCLQNLAGLH 232 (606)
T ss_dssp C-EEEEEEEESCCSCHHHHHHHHHTTTTCE
T ss_pred c-eeeeeeccCCccchhHHHHHhccccccc
Confidence 3 5666777777665 35566666666554
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.69 E-value=1.6e-17 Score=165.69 Aligned_cols=173 Identities=20% Similarity=0.155 Sum_probs=146.3
Q ss_pred CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788 14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY 92 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~ 92 (366)
.++|++|+|++|.+.+..|. |.++++|++|++++|.+.+..|.+++.+++|++|+|++|.+.+..|..++++++|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 46899999999998766665 99999999999999988777778899999999999999997777777799999999999
Q ss_pred eeCCCCCC-cchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcc
Q 017788 93 LSGCSNLR-RIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCL 171 (366)
Q Consensus 93 Ls~n~~~~-~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l 171 (366)
+++|.+.+ ..|..++++++|++|++++|...+.+|.. .+.++++|+.|+++.|.+++..|..++.+..++.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-------DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-------TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHh-------hhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 99998765 46778999999999999999867777631 57788999999999999998889999999999999
Q ss_pred cCChhhhhcchHHHHHHHHhhh
Q 017788 172 KLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 172 ~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
+++.|.+..+....+..+++|+
T Consensus 178 ~l~~n~~~~~~~~~~~~l~~L~ 199 (549)
T 2z81_A 178 TLHLSESAFLLEIFADILSSVR 199 (549)
T ss_dssp EEECSBSTTHHHHHHHSTTTBS
T ss_pred ecccCcccccchhhHhhccccc
Confidence 9998887654444444455554
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.69 E-value=5.7e-17 Score=155.05 Aligned_cols=166 Identities=14% Similarity=0.059 Sum_probs=111.8
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCcc-ccCCcCCcEEecccccccCccchhcCCCCCC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSS-IQYLSKLVTLDMRLCKNLNRLPSSLCELISL 88 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~-i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L 88 (366)
++++++|++|+|++|.+.+..|. +.++++|++|++++|.+. .+|.. ++.+++|++|++++|.+.+..|..+..+++|
T Consensus 89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence 56788999999999998777676 899999999999998655 55554 5889999999999999777667778899999
Q ss_pred cEEEeeCCCCCCcchHHHhccCC-------------------CcEEcccccccccccCCCCCCccEEecC----------
Q 017788 89 QRLYLSGCSNLRRIPESIINLSK-------------------LELLHLKNCSKLLSLPELPCNLFSVGVR---------- 139 (366)
Q Consensus 89 ~~L~Ls~n~~~~~lp~~i~~L~~-------------------L~~L~L~~n~~l~~lp~l~~~L~~L~l~---------- 139 (366)
++|++++|.+...- +..+++ |+.|++++|.+...-...+.+|+.|+++
T Consensus 168 ~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l 244 (390)
T 3o6n_A 168 QNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWL 244 (390)
T ss_dssp CEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGG
T ss_pred CEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHH
Confidence 99999998765432 233333 3344444443222211223455555543
Q ss_pred -CCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhc
Q 017788 140 -RCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG 180 (366)
Q Consensus 140 -~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~ 180 (366)
++++|+.|+++.|.+.+..|..+..+..++.+++++|.+++
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc
Confidence 24556666666666665545555555555555555555544
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.69 E-value=2e-17 Score=166.94 Aligned_cols=166 Identities=20% Similarity=0.128 Sum_probs=144.6
Q ss_pred CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788 14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY 92 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~ 92 (366)
.++|++|+|++|.+.+..+. |.++++|++|++++|.+.+..|.+++++++|++|+|++|.+.+..|..|+++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 47899999999999766664 99999999999999987777788899999999999999997777799999999999999
Q ss_pred eeCCCCCCcchHHHhccCCCcEEccccccccc-ccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC--
Q 017788 93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLL-SLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD-- 169 (366)
Q Consensus 93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~-~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~-- 169 (366)
+++|.+.+..|..++++++|++|++++|.+.+ .+|. .+.++++|+.|+++.|.+++..+..++.+..++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~--------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~ 182 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA--------YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG--------GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechH--------hHhhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence 99998877666889999999999999997654 5677 788999999999999999998888888887765
Q ss_pred --cccCChhhhhcchHHHHH
Q 017788 170 --CLKLDQNELKGIAEDALQ 187 (366)
Q Consensus 170 --~l~L~~n~l~~~~~~~~~ 187 (366)
.++++.|.++++.+..+.
T Consensus 183 l~~L~l~~n~l~~~~~~~~~ 202 (606)
T 3vq2_A 183 NLSLDMSLNPIDFIQDQAFQ 202 (606)
T ss_dssp CCEEECTTCCCCEECTTTTT
T ss_pred cceeeccCCCcceeCccccc
Confidence 699999999877666554
No 49
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=7e-18 Score=150.48 Aligned_cols=164 Identities=17% Similarity=0.185 Sum_probs=88.4
Q ss_pred CCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccC-ccccCCcCCcEEeccc-ccccCccchhcCCCCCCcEEE
Q 017788 16 NLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETH-SSIQYLSKLVTLDMRL-CKNLNRLPSSLCELISLQRLY 92 (366)
Q Consensus 16 ~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p-~~i~~L~~L~~L~L~~-n~~~~~lp~~i~~l~~L~~L~ 92 (366)
+|++|++++|++.+..+. |.++++|++|++++|..++.++ ..+.++++|++|++++ |.+.+..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 566667766666444442 6666667777776664233333 3566666677777766 443322234556666667777
Q ss_pred eeCCCCCCcchHHHhccCCCc---EEcccccccccccCCCCCCccEEecCCCcCCc-cccCcccccccCCCCCCceEEeC
Q 017788 93 LSGCSNLRRIPESIINLSKLE---LLHLKNCSKLLSLPELPCNLFSVGVRRCTSLE-ALSSFSFLFSAMSPHNDQYFNLS 168 (366)
Q Consensus 93 Ls~n~~~~~lp~~i~~L~~L~---~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~l 168 (366)
+++|.+.+ +|. +..+++|+ .|++++|..++.+|.. .+.++++|+ .|+++.|.++...+..+.. ..+
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-------~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L 181 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVN-------AFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKL 181 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTT-------TTTTTBSSEEEEECCSCCCCEECTTTTTT-CEE
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcc-------cccchhcceeEEEcCCCCCcccCHhhcCC-CCC
Confidence 66665443 554 55666665 6666666333344321 244455555 5555555555422223333 445
Q ss_pred CcccCChhh-hhcchHHHHHHH
Q 017788 169 DCLKLDQNE-LKGIAEDALQKI 189 (366)
Q Consensus 169 ~~l~L~~n~-l~~~~~~~~~~l 189 (366)
+.+++++|+ ++++.+..+..+
T Consensus 182 ~~L~L~~n~~l~~i~~~~~~~l 203 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDKDAFGGV 203 (239)
T ss_dssp EEEECTTCTTCCEECTTTTTTC
T ss_pred CEEEcCCCCCcccCCHHHhhcc
Confidence 555555553 554444444444
No 50
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.69 E-value=3.2e-17 Score=167.81 Aligned_cols=181 Identities=17% Similarity=0.109 Sum_probs=112.3
Q ss_pred CCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788 13 NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL 91 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L 91 (366)
++++|++|+|++|.+.+..+. |+++++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..++.+++|++|
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 456667777776666433333 6677777777777765554444567777777777777776666666666677777777
Q ss_pred EeeCCCCCCcchHHHh--ccCCCcEEcccccccccccCCCC------------------------------CCccEEecC
Q 017788 92 YLSGCSNLRRIPESII--NLSKLELLHLKNCSKLLSLPELP------------------------------CNLFSVGVR 139 (366)
Q Consensus 92 ~Ls~n~~~~~lp~~i~--~L~~L~~L~L~~n~~l~~lp~l~------------------------------~~L~~L~l~ 139 (366)
++++|.+.+..|..+. .+++|+.|++++|.+.+..|... .+|+.|.+.
T Consensus 151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~ 230 (680)
T 1ziw_A 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230 (680)
T ss_dssp ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred EccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence 7777766655555554 34677777777775544433211 233344333
Q ss_pred C-------------C--cCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 140 R-------------C--TSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 140 ~-------------~--~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
+ + ++|+.|+++.|.+.+..+..++.+..++.+++++|.+.+..+.++.++++|+
T Consensus 231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (680)
T 1ziw_A 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299 (680)
T ss_dssp TSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCC
T ss_pred CCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCcc
Confidence 2 1 2366777777777666666666777777777777777766666665555554
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.68 E-value=4.7e-17 Score=152.30 Aligned_cols=177 Identities=20% Similarity=0.209 Sum_probs=139.6
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
++++++|++|+|++|.+.+..|. +.++++|++|++++|.+ ..+|..+. ++|++|++++|.+.+..+..+..+++|+
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC-CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC-CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence 67899999999999998766675 99999999999999855 46776665 8999999999996655555688999999
Q ss_pred EEEeeCCCCC--CcchHHHhccCCCcEEcccccccccccCC-CCCCccEEe-------------cCCCcCCccccCcccc
Q 017788 90 RLYLSGCSNL--RRIPESIINLSKLELLHLKNCSKLLSLPE-LPCNLFSVG-------------VRRCTSLEALSSFSFL 153 (366)
Q Consensus 90 ~L~Ls~n~~~--~~lp~~i~~L~~L~~L~L~~n~~l~~lp~-l~~~L~~L~-------------l~~~~~L~~L~l~~n~ 153 (366)
+|++++|.+. +..|..+..+ +|+.|++++|.+. .+|. .+.+|+.|+ +.++++|+.|+++.|.
T Consensus 151 ~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 151 CIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp EEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred EEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 9999999774 3566777777 8888888888543 4553 334555554 3457789999999999
Q ss_pred cccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 154 FSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 154 l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
+.+..+..+..+..++.+++++|.++. +|..+..++.|+
T Consensus 229 l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~ 267 (332)
T 2ft3_A 229 IRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQ 267 (332)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSCCCB-CCTTGGGCTTCC
T ss_pred CCcCChhHhhCCCCCCEEECCCCcCee-cChhhhcCccCC
Confidence 999777789999999999999999984 454455555554
No 52
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=3e-17 Score=171.59 Aligned_cols=158 Identities=18% Similarity=0.182 Sum_probs=138.7
Q ss_pred CCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCC-Ccc-ccCccccCCc-------CCcEEecccccccCccch--
Q 017788 13 NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACS-SLV-ETHSSIQYLS-------KLVTLDMRLCKNLNRLPS-- 80 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~-~~~-~~p~~i~~L~-------~L~~L~L~~n~~~~~lp~-- 80 (366)
++++|++|+|++|.+.+.+|. +.++++|++|+|++|. +.+ .+|..++.++ +|++|+|++|.+. .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 789999999999999999996 9999999999999997 666 6888777766 9999999999965 8998
Q ss_pred hcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcC-CccccCcccccccCCC
Q 017788 81 SLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTS-LEALSSFSFLFSAMSP 159 (366)
Q Consensus 81 ~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~-L~~L~l~~n~l~~~~~ 159 (366)
.++++++|++|+|++|.+. .+| .++++++|+.|++++|.+. .+|. .+.++++ |+.|+++.|.+.. +|
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~--------~l~~l~~~L~~L~Ls~N~L~~-lp 635 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPE--------DFCAFTDQVEGLGFSHNKLKY-IP 635 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCT--------TSCEECTTCCEEECCSSCCCS-CC
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchH--------HHhhccccCCEEECcCCCCCc-Cc
Confidence 8999999999999999877 888 8999999999999999765 7887 6777888 9999999999985 78
Q ss_pred CCCceEEe--CCcccCChhhhhcchH
Q 017788 160 HNDQYFNL--SDCLKLDQNELKGIAE 183 (366)
Q Consensus 160 ~~~~~l~~--l~~l~L~~n~l~~~~~ 183 (366)
..+..+.. |+.+++++|.+.+.+|
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred hhhhccccCCCCEEECcCCcCCCccc
Confidence 77766654 8889999999987654
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=6.3e-17 Score=150.27 Aligned_cols=166 Identities=19% Similarity=0.139 Sum_probs=133.4
Q ss_pred CCCCCCCEEeccCCCCCCCCCC-CCCC-----CCCcEEecccCCCccccCccccCCcCCcEEecccccccCc--cchhc-
Q 017788 12 KNLVNLKEIDLSYSRQLKKLPD-LSQA-----RNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNR--LPSSL- 82 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~~~~p~-l~~l-----~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~--lp~~i- 82 (366)
..+++|++|+|++|++.+. |. +..+ ++|++|++++|.+.+..|..++.+++|++|+|++|++.+. +|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 6788999999999998766 65 6666 8999999999987777678899999999999999987665 45555
Q ss_pred -CCCCCCcEEEeeCCCCCC--cch-HHHhccCCCcEEcccccccccccC--C--CCCCccEEecCCC----------cCC
Q 017788 83 -CELISLQRLYLSGCSNLR--RIP-ESIINLSKLELLHLKNCSKLLSLP--E--LPCNLFSVGVRRC----------TSL 144 (366)
Q Consensus 83 -~~l~~L~~L~Ls~n~~~~--~lp-~~i~~L~~L~~L~L~~n~~l~~lp--~--l~~~L~~L~l~~~----------~~L 144 (366)
..+++|++|++++|.+.+ .++ ..+.++++|+.|++++|.+.+..| . ...+|+.|+++++ ++|
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L 276 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL 276 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEE
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCc
Confidence 789999999999997663 233 334578899999999997766553 1 2368888887754 478
Q ss_pred ccccCcccccccCCCCCCceEEeCCcccCChhhhhc
Q 017788 145 EALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG 180 (366)
Q Consensus 145 ~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~ 180 (366)
+.|+++.|++++. |. +..+..++.+++++|++++
T Consensus 277 ~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 277 SVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred eEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9999999999984 66 8899999999999999875
No 54
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=158.51 Aligned_cols=161 Identities=15% Similarity=0.097 Sum_probs=119.7
Q ss_pred CCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCcc--ccCccccCCcCCcEEecccccccCccchh-cCCCCC
Q 017788 12 KNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLV--ETHSSIQYLSKLVTLDMRLCKNLNRLPSS-LCELIS 87 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~--~~p~~i~~L~~L~~L~L~~n~~~~~lp~~-i~~l~~ 87 (366)
..+++|++|++++|++.+.+|. +.++++|++|++++|.+.+ .+|..++.+++|++|++++|.+.+.+|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 5677788888888877766664 7777888888888776554 45566777888888888887766656654 567778
Q ss_pred CcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEe
Q 017788 88 LQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNL 167 (366)
Q Consensus 88 L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 167 (366)
|++|++++|.+.+..|..+. ++|+.|++++|++ +.+|. .+.++++|+.|+++.|.++...+..+..+..
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l-~~ip~--------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPK--------QVVKLEALQELNVASNQLKSVPDGIFDRLTS 469 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCC-CCCCG--------GGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcc-cccch--------hhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence 88888888777666665543 6788888888754 46665 5567889999999999999743344888999
Q ss_pred CCcccCChhhhhcchH
Q 017788 168 SDCLKLDQNELKGIAE 183 (366)
Q Consensus 168 l~~l~L~~n~l~~~~~ 183 (366)
++.+++++|++.+..+
T Consensus 470 L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 470 LQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCEEECCSSCBCCCHH
T ss_pred ccEEECcCCCCcccCC
Confidence 9999999999987543
No 55
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=139.03 Aligned_cols=154 Identities=14% Similarity=0.106 Sum_probs=130.3
Q ss_pred CCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccC-ccccCCcCCcEEecccccccCccchhcCCCCCCcEEEee
Q 017788 17 LKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETH-SSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLS 94 (366)
Q Consensus 17 L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p-~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls 94 (366)
-+++++++|.+ +.+|. + ...+++|+|++|.+.+..+ ..++.+++|++|+|++|.+.+..|..+..+++|++|+|+
T Consensus 13 ~~~l~~s~n~l-~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKL-NKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCC-SSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCc-ccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 35899999987 45664 4 3467899999997665544 458899999999999999666666689999999999999
Q ss_pred CCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccCC
Q 017788 95 GCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLD 174 (366)
Q Consensus 95 ~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~ 174 (366)
+|.+.+..|..+..+++|++|++++|.+.+..|. .+.++++|+.|+++.|.+++..|..+..+..++.++++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGND--------SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT--------SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHh--------HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 9998877788899999999999999977666666 67888999999999999999889999999999999999
Q ss_pred hhhhhcc
Q 017788 175 QNELKGI 181 (366)
Q Consensus 175 ~n~l~~~ 181 (366)
+|++...
T Consensus 162 ~N~l~c~ 168 (220)
T 2v70_A 162 ANPFNCN 168 (220)
T ss_dssp SCCEECS
T ss_pred CcCCcCC
Confidence 9998764
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.67 E-value=1e-17 Score=167.68 Aligned_cols=173 Identities=20% Similarity=0.153 Sum_probs=120.9
Q ss_pred CCCCCCCEEeccCCCCCCCC--CC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccc-hhcCCCCC
Q 017788 12 KNLVNLKEIDLSYSRQLKKL--PD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP-SSLCELIS 87 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~~~~--p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp-~~i~~l~~ 87 (366)
..+++|++|++++|.+.+.. |. +.++++|++|++++|... .++..+..+++|++|++++|.+.+..| ..+..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 35667777777777664332 32 566777777777777443 344447777777777777777555544 35667778
Q ss_pred CcEEEeeCCCCCCcchHHHhccCCCcEEcccccccc-cccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEE
Q 017788 88 LQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKL-LSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFN 166 (366)
Q Consensus 88 L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l-~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 166 (366)
|++|++++|.+.+..|..+.++++|+.|++++|.+. +.+|. .+.++++|+.|+++.|.+++..|..+..+.
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD--------IFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS--------CCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh--------hhhcccCCCEEECCCCccccCChhhhhccc
Confidence 888888887777667777777888888888887665 35665 566777888888888888776677777778
Q ss_pred eCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 167 LSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 167 ~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
.++.+++++|.++++.+..+.++++|+
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 888888888888777666665555553
No 57
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.67 E-value=1.9e-16 Score=139.62 Aligned_cols=152 Identities=17% Similarity=0.135 Sum_probs=109.1
Q ss_pred CEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCC
Q 017788 18 KEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC 96 (366)
Q Consensus 18 ~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n 96 (366)
+.++++++.+ ..+|. +. ++|+.|++++|.+....+..+..+++|++|+|++|.+.+..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l-~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGL-TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCC-SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCc-CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 5677777766 44554 43 57888888887665555557777888888888888766666777778888888888887
Q ss_pred CCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccCChh
Q 017788 97 SNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQN 176 (366)
Q Consensus 97 ~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n 176 (366)
.+....+..+.++++|+.|+|++|++....|. .+.++++|+.|+++.|.+++..+..+..+..++.+++++|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVD--------AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHH--------HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 76644444467788888888888765554454 5667778888888888887766666777777888888888
Q ss_pred hhhc
Q 017788 177 ELKG 180 (366)
Q Consensus 177 ~l~~ 180 (366)
++..
T Consensus 163 ~~~c 166 (220)
T 2v9t_B 163 PFIC 166 (220)
T ss_dssp CEEC
T ss_pred CcCC
Confidence 7754
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.67 E-value=2e-16 Score=161.87 Aligned_cols=183 Identities=17% Similarity=0.137 Sum_probs=132.2
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC--CCCCCCCcEEecccCCCccccCccccCCcCCcEEeccccccc--CccchhcCCCC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNL--NRLPSSLCELI 86 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~--~~lp~~i~~l~ 86 (366)
+..+++|++|+|++|.+.+.+|. +.++++|++|++++|......+..+..+++|+.|++++|.+. +.+|..+..++
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 56788999999999988766662 888899999999988776666667777788888888777643 46677777777
Q ss_pred CCcEEEeeCCCCCCcchHHHhccCCCcEEccccccccccc----CC-------CCCCccEEe-------------cCCCc
Q 017788 87 SLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSL----PE-------LPCNLFSVG-------------VRRCT 142 (366)
Q Consensus 87 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~l----p~-------l~~~L~~L~-------------l~~~~ 142 (366)
+|++|++++|.+.+..|..+.++++|+.|++++|.+.... |. ...+|+.|+ +.+++
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence 8888888777766655566777777777777777543321 11 113344443 34567
Q ss_pred CCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHH-HHHhhh
Q 017788 143 SLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQ-KIQQKA 193 (366)
Q Consensus 143 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~-~l~~L~ 193 (366)
+|+.|+++.|.++...+..+..+..++.+++++|.++++.+..+. .++.|+
T Consensus 561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 612 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS
T ss_pred CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccC
Confidence 788888888888876666677888888888888888888877776 555554
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.66 E-value=1.6e-16 Score=157.41 Aligned_cols=86 Identities=17% Similarity=0.063 Sum_probs=62.9
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccC-ccchhcCCCCCC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN-RLPSSLCELISL 88 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~-~lp~~i~~l~~L 88 (366)
++++++|++|+|++|++.+..|+ |+++++|++|+|++|.+. .+|.. .+++|++|+|++|.+.+ .+|..++++++|
T Consensus 41 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L 117 (520)
T 2z7x_B 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQL 117 (520)
T ss_dssp HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTC
T ss_pred ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcc
Confidence 56777888888888887665564 788888888888887544 56655 67888888888887655 467777777777
Q ss_pred cEEEeeCCCCC
Q 017788 89 QRLYLSGCSNL 99 (366)
Q Consensus 89 ~~L~Ls~n~~~ 99 (366)
++|++++|.+.
T Consensus 118 ~~L~L~~n~l~ 128 (520)
T 2z7x_B 118 KFLGLSTTHLE 128 (520)
T ss_dssp CEEEEEESSCC
T ss_pred eEEEecCcccc
Confidence 77777776543
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=2e-17 Score=165.51 Aligned_cols=164 Identities=20% Similarity=0.193 Sum_probs=144.6
Q ss_pred CCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccC-ccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 12 KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETH-SSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p-~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
.++++|++|++++|.+.+..+.+..+++|++|++++|...+..| ..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 370 ~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 449 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449 (570)
T ss_dssp HTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred cccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence 36789999999999986554458999999999999997766555 46889999999999999988888999999999999
Q ss_pred EEeeCCCCC-CcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC
Q 017788 91 LYLSGCSNL-RRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD 169 (366)
Q Consensus 91 L~Ls~n~~~-~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~ 169 (366)
|++++|.+. +.+|..+..+++|+.|++++|++.+..|. .+.++++|+.|+++.|.+++..+..+..+..++
T Consensus 450 L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT--------AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT--------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred EECcCCcCccccchhhhhcccCCCEEECCCCccccCChh--------hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 999999876 57899999999999999999987776677 678899999999999999997788889999999
Q ss_pred cccCChhhhhcchH
Q 017788 170 CLKLDQNELKGIAE 183 (366)
Q Consensus 170 ~l~L~~n~l~~~~~ 183 (366)
.+++++|++.+..|
T Consensus 522 ~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 522 KIWLHTNPWDCSCP 535 (570)
T ss_dssp EEECCSSCBCCCTT
T ss_pred EEEecCCcccCCCc
Confidence 99999999987654
No 61
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=2.8e-16 Score=135.98 Aligned_cols=134 Identities=17% Similarity=0.225 Sum_probs=114.4
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
+..+++|++|++++|.+ ..++.+..+++|++|++++|.+....+..++.+++|++|++++|.+....|..+..+++|++
T Consensus 62 l~~l~~L~~L~l~~n~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 140 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHA-TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140 (197)
T ss_dssp GGGCTTCSEEEEESCCC-SCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred HhcCCCCCEEEccCCCC-CcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence 56789999999999965 55667999999999999999887778889999999999999999988888999999999999
Q ss_pred EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788 91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA 156 (366)
Q Consensus 91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~ 156 (366)
|++++|...+.+| .+..+++|+.|++++|.+ ..++ .+.++++|+.|+++.|.+.+
T Consensus 141 L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~---------~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 141 IDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR---------GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp EECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT---------TGGGCSSCCEEEECBC----
T ss_pred EEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH---------HhccCCCCCEEEeeCcccCC
Confidence 9999998566777 699999999999999964 4444 46778999999999998754
No 62
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=5.3e-16 Score=136.78 Aligned_cols=135 Identities=19% Similarity=0.072 Sum_probs=115.4
Q ss_pred CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788 14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY 92 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~ 92 (366)
.++|++|+|++|++.+..+. |..+++|++|+|++|.+.+..|..+.++++|++|+|++|.+....+..+..+++|++|+
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 36899999999999665554 99999999999999988777789999999999999999995544344567899999999
Q ss_pred eeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788 93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA 156 (366)
Q Consensus 93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~ 156 (366)
|++|.+.+..|..+..+++|+.|+|++|.+.+..+. .+..+++|+.|+++.|.+..
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG--------TFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT--------TTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH--------HHhCCCCCCEEEeCCCCcCC
Confidence 999999888889999999999999999976544444 46778999999999998754
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.66 E-value=7.3e-17 Score=152.28 Aligned_cols=171 Identities=15% Similarity=0.126 Sum_probs=102.2
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCc--cccCCcCCcEEecccccccCcc-chhcCCCC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHS--SIQYLSKLVTLDMRLCKNLNRL-PSSLCELI 86 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~--~i~~L~~L~~L~L~~n~~~~~l-p~~i~~l~ 86 (366)
+.++++|++|+|++|++.+..+. +.++++|++|++++|.+. .+|. .++.+++|++|++++|...+.+ |..+..++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 174 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCC
Confidence 34556666777766666433333 666666666666666443 3443 5566666666666666433333 34555666
Q ss_pred CCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCC----CCCCccEEe-------------------------
Q 017788 87 SLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPE----LPCNLFSVG------------------------- 137 (366)
Q Consensus 87 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~----l~~~L~~L~------------------------- 137 (366)
+|++|++++|.+.+..|..+.++++|++|++++|.+ +.+|. ..++|+.|+
T Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~ 253 (353)
T 2z80_A 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253 (353)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCE
T ss_pred CCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhc
Confidence 666666666655554455555555555555554432 22221 012222222
Q ss_pred -------------------cCCCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchH
Q 017788 138 -------------------VRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAE 183 (366)
Q Consensus 138 -------------------l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~ 183 (366)
+.++++|+.|+++.|.++...+..++.+..++.+++++|++.+..|
T Consensus 254 l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 2346789999999999997444446889999999999999988654
No 64
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=1.4e-16 Score=147.67 Aligned_cols=151 Identities=21% Similarity=0.229 Sum_probs=79.2
Q ss_pred CCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788 13 NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY 92 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~ 92 (366)
.+++|++|+|++|.+.+. +.+..+++|++|++++|.+. .++ .+..+++|++|++++|.+ ..+|. +..+++|++|+
T Consensus 61 ~l~~L~~L~L~~n~i~~~-~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQVLY 135 (308)
T ss_dssp GCTTCCEEECCSSCCCCC-GGGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCC-CCCGG-GTTCTTCCEEE
T ss_pred ccCCCCEEEccCCcCCCC-hhHccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCCCCC-CCchh-hcCCCCCCEEE
Confidence 445555555555544322 22555555555555555322 222 345555555555555552 22332 44555555555
Q ss_pred eeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCccc
Q 017788 93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLK 172 (366)
Q Consensus 93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~ 172 (366)
+++|.+.+ ++. +..+++|+.|++++|.+ ..++ .+.++++|+.|+++.|.+++..+ +..+..++.++
T Consensus 136 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l-~~~~---------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~ 201 (308)
T 1h6u_A 136 LDLNQITN-ISP-LAGLTNLQYLSIGNAQV-SDLT---------PLANLSKLTTLKADDNKISDISP--LASLPNLIEVH 201 (308)
T ss_dssp CCSSCCCC-CGG-GGGCTTCCEEECCSSCC-CCCG---------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred CCCCccCc-Ccc-ccCCCCccEEEccCCcC-CCCh---------hhcCCCCCCEEECCCCccCcChh--hcCCCCCCEEE
Confidence 55554332 222 45555555555555532 2222 14456677777777777766332 56677777777
Q ss_pred CChhhhhcch
Q 017788 173 LDQNELKGIA 182 (366)
Q Consensus 173 L~~n~l~~~~ 182 (366)
+++|.+++..
T Consensus 202 L~~N~l~~~~ 211 (308)
T 1h6u_A 202 LKNNQISDVS 211 (308)
T ss_dssp CTTSCCCBCG
T ss_pred ccCCccCccc
Confidence 7777777655
No 65
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.66 E-value=5e-16 Score=136.94 Aligned_cols=135 Identities=16% Similarity=0.070 Sum_probs=118.7
Q ss_pred CCCCCEEeccCCCCCCCCC-C-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788 14 LVNLKEIDLSYSRQLKKLP-D-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL 91 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p-~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L 91 (366)
...+++|+|++|.+.+..| . |.++++|++|+|++|.+.+..+..++.+++|++|+|++|.+.+..|..+..+++|++|
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 3468999999999976655 3 8999999999999998776666789999999999999999777777779999999999
Q ss_pred EeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788 92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA 156 (366)
Q Consensus 92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~ 156 (366)
+|++|.+.+..|..+..+++|+.|+|++|.+.+..|. .+..+++|+.|+++.|.+..
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG--------AFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT--------TTTTCTTCCEEECCSCCEEC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH--------HhcCCCCCCEEEecCcCCcC
Confidence 9999999888899999999999999999977666676 67788999999999998765
No 66
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=9.2e-16 Score=136.07 Aligned_cols=153 Identities=16% Similarity=0.041 Sum_probs=114.0
Q ss_pred CCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeC
Q 017788 17 LKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSG 95 (366)
Q Consensus 17 L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~ 95 (366)
.+.++.+++.+ +.+|. +. ++|++|+|++|.+.+..|..++.+++|++|+|++|.+....+..+..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRH-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCc-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45677777766 45554 43 7788888888877766677788888888888888885333334567888888888888
Q ss_pred CCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccCCh
Q 017788 96 CSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQ 175 (366)
Q Consensus 96 n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~ 175 (366)
|.+....+..+..+++|+.|++++|++ ..+|. .+.++++|+.|+++.|.++...+..+..+..++.+++++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~lp~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKL-TELPR--------GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCC-CSCCT--------TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcc-cccCc--------ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 877655555677888888888888754 46666 567778888888888888876666777888888888888
Q ss_pred hhhhcc
Q 017788 176 NELKGI 181 (366)
Q Consensus 176 n~l~~~ 181 (366)
|++...
T Consensus 169 N~~~c~ 174 (229)
T 3e6j_A 169 NPWDCE 174 (229)
T ss_dssp SCBCTT
T ss_pred CCccCC
Confidence 887654
No 67
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=4.2e-16 Score=138.25 Aligned_cols=141 Identities=19% Similarity=0.166 Sum_probs=116.0
Q ss_pred ceeccCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCC
Q 017788 7 RFLILKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCEL 85 (366)
Q Consensus 7 ~~l~l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l 85 (366)
..+...-.++|++|+|++|.+.+..|. |.++++|++|+|++|.+....+..+..+++|++|+|++|.+.+..+..+..+
T Consensus 32 ~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 111 (229)
T 3e6j_A 32 ASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL 111 (229)
T ss_dssp SSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcc
Confidence 333333457899999999999877776 9999999999999997654444567999999999999999665555567899
Q ss_pred CCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788 86 ISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA 156 (366)
Q Consensus 86 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~ 156 (366)
++|++|+|++|.+. .+|..+..+++|++|++++|++. .+|.. .+..+++|+.|+++.|.+..
T Consensus 112 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~-------~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 112 VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHG-------AFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTT-------TTTTCTTCCEEECTTSCBCT
T ss_pred hhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHH-------HHhCCCCCCEEEeeCCCccC
Confidence 99999999999766 88999999999999999999654 55431 46788999999999998765
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=148.13 Aligned_cols=158 Identities=16% Similarity=0.088 Sum_probs=120.7
Q ss_pred CCCCCCCEEeccCCCCCCCCCC-----CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCc--cch--hc
Q 017788 12 KNLVNLKEIDLSYSRQLKKLPD-----LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNR--LPS--SL 82 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~~~~p~-----l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~--lp~--~i 82 (366)
.++++|++|+|++|.+.+..+. +..+++|++|+|++|.+.+..+..++.+++|++|+|++|++.+. ++. .+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 6788999999999998765552 45788999999999988777778889999999999999986542 332 23
Q ss_pred CCCCCCcEEEeeCCCCCCcchH----HHhccCCCcEEcccccccccccCCCCCCccEEecCCC---cCCccccCcccccc
Q 017788 83 CELISLQRLYLSGCSNLRRIPE----SIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRC---TSLEALSSFSFLFS 155 (366)
Q Consensus 83 ~~l~~L~~L~Ls~n~~~~~lp~----~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~---~~L~~L~l~~n~l~ 155 (366)
..+++|++|+|++|.+. .+|. .++.+++|++|++++|.+.+..|. .+..+ ++|+.|+++.|.++
T Consensus 194 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~--------~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 194 HKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNP--------SAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp TSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS--------CCSSCCCCTTCCCEECCSSCCC
T ss_pred hcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchh--------hHHhccCcCcCCEEECCCCCCC
Confidence 58899999999998764 4444 257889999999999977666676 34444 57888888888887
Q ss_pred cCCCCCCceEEeCCcccCChhhhhcc
Q 017788 156 AMSPHNDQYFNLSDCLKLDQNELKGI 181 (366)
Q Consensus 156 ~~~~~~~~~l~~l~~l~L~~n~l~~~ 181 (366)
. +|..+. ..++.++|++|.++++
T Consensus 265 ~-lp~~~~--~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 265 Q-VPKGLP--AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp S-CCSCCC--SCCSCEECCSCCCCSC
T ss_pred c-hhhhhc--CCCCEEECCCCcCCCC
Confidence 5 555543 6778888888888764
No 69
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.66 E-value=5.5e-17 Score=163.89 Aligned_cols=144 Identities=22% Similarity=0.113 Sum_probs=109.5
Q ss_pred CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEe
Q 017788 15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL 93 (366)
Q Consensus 15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~L 93 (366)
+++++|||++|++.+..|. |.++++|++|+|++|.+.+..|.+|+++++|++|+|++|++.+..+..|.++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 3789999999988655554 899999999999998766555667899999999999999854444456788999999999
Q ss_pred eCCCCCCcchHHHhccCCCcEEccccccccc-ccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEE
Q 017788 94 SGCSNLRRIPESIINLSKLELLHLKNCSKLL-SLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFN 166 (366)
Q Consensus 94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~-~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 166 (366)
++|.+.+..+..|+++++|++|++++|.+.. .+|. .+.++++|+.|+++.|.+++..+..+..+.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE--------YFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG--------GGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCch--------hhccchhhhhhcccCccccccccccccchh
Confidence 9987776555568899999999999986543 3454 456677777888877777765555554443
No 70
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=166.19 Aligned_cols=172 Identities=16% Similarity=0.055 Sum_probs=132.1
Q ss_pred CCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCcccc-CccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 13 NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVET-HSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~-p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
-.++|++|+|++|.+.+..|. |.++++|++|+|++|...+.+ |.+++++++|++|+|++|.+.+..|..|+++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 468899999999999776665 999999999999999777666 788999999999999999987778999999999999
Q ss_pred EEeeCCCCCCcchHH--HhccCCCcEEcccccccccccC-C---CCCCccEEecCCC---------------cCCccccC
Q 017788 91 LYLSGCSNLRRIPES--IINLSKLELLHLKNCSKLLSLP-E---LPCNLFSVGVRRC---------------TSLEALSS 149 (366)
Q Consensus 91 L~Ls~n~~~~~lp~~--i~~L~~L~~L~L~~n~~l~~lp-~---l~~~L~~L~l~~~---------------~~L~~L~l 149 (366)
|+|++|.+.+.+|.. ++++++|++|++++|.+.+..+ . ...+|+.|++++. ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999999888777766 8999999999999997755443 2 1245555555432 45566666
Q ss_pred cccccccCCCCCCceEEe------CCcccCChhhhhcchHH
Q 017788 150 FSFLFSAMSPHNDQYFNL------SDCLKLDQNELKGIAED 184 (366)
Q Consensus 150 ~~n~l~~~~~~~~~~l~~------l~~l~L~~n~l~~~~~~ 184 (366)
+.|.+.+..|..++.+.. ++.+++++|.+.+..+.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 222 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH
Confidence 666665555444443333 66677777766554443
No 71
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=1.1e-16 Score=151.65 Aligned_cols=162 Identities=17% Similarity=0.078 Sum_probs=120.6
Q ss_pred CCCCCEEeccCCCCCCCCCC-CC-CCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788 14 LVNLKEIDLSYSRQLKKLPD-LS-QARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL 91 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p~-l~-~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L 91 (366)
...++.|+|++|++.+..+. +. ++++|++|+|++|.+....+..+..+++|++|+|++|++....+..|..+++|++|
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 44688999999988665555 66 88999999999987766666778899999999999988555555567889999999
Q ss_pred EeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEe--CC
Q 017788 92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNL--SD 169 (366)
Q Consensus 92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--l~ 169 (366)
+|++|.+....|..|.++++|+.|+|++|.+ ..+|... +. .+.++++|+.|+++.|.++...+..+..+.. ++
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~--~~--~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~ 192 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVEL--IK--DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGG--TC------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHT
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHH--hc--CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcc
Confidence 9999988777788888999999999999854 4555410 00 1156788889999999888754445555554 36
Q ss_pred cccCChhhhhc
Q 017788 170 CLKLDQNELKG 180 (366)
Q Consensus 170 ~l~L~~n~l~~ 180 (366)
.++|++|++..
T Consensus 193 ~l~l~~N~~~C 203 (361)
T 2xot_A 193 GLYLHNNPLEC 203 (361)
T ss_dssp TEECCSSCEEC
T ss_pred eEEecCCCccC
Confidence 78888888764
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=5e-17 Score=144.94 Aligned_cols=165 Identities=14% Similarity=0.071 Sum_probs=132.7
Q ss_pred cCCCCCCCEEeccCCC-CCCCCCC-CCCCCCCcEEeccc-CCCccccCccccCCcCCcEEecccccccCccchhcCCCCC
Q 017788 11 LKNLVNLKEIDLSYSR-QLKKLPD-LSQARNLENLLLKA-CSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELIS 87 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~-~~~~~p~-l~~l~~L~~L~L~~-n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~ 87 (366)
++++++|++|++++|+ +....+. |.++++|++|++++ |.+....+..+..+++|++|++++|.+ ..+|. +..+++
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l-~~lp~-~~~l~~ 128 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPD-LTKVYS 128 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC-CSCCC-CTTCCB
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC-ccccc-cccccc
Confidence 6789999999999997 6443343 89999999999998 765554456789999999999999985 45887 888888
Q ss_pred Cc---EEEeeCC-CCCCcchHHHhccCCCc-EEcccccccccccCCCCCCccEEecCCCcCCccccCcccc-cccCCCCC
Q 017788 88 LQ---RLYLSGC-SNLRRIPESIINLSKLE-LLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFL-FSAMSPHN 161 (366)
Q Consensus 88 L~---~L~Ls~n-~~~~~lp~~i~~L~~L~-~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~-l~~~~~~~ 161 (366)
|+ +|++++| .+....+..+.++++|+ .|++++|++ +.+|. .+...++|+.|+++.|. ++...+..
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~--------~~~~~~~L~~L~L~~n~~l~~i~~~~ 199 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQG--------YAFNGTKLDAVYLNKNKYLTVIDKDA 199 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECT--------TTTTTCEEEEEECTTCTTCCEECTTT
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCH--------hhcCCCCCCEEEcCCCCCcccCCHHH
Confidence 88 9999999 65544445689999999 999999865 47775 33333789999999995 88867778
Q ss_pred CceE-EeCCcccCChhhhhcchHHHH
Q 017788 162 DQYF-NLSDCLKLDQNELKGIAEDAL 186 (366)
Q Consensus 162 ~~~l-~~l~~l~L~~n~l~~~~~~~~ 186 (366)
+..+ ..++.+++++|.++++.+..+
T Consensus 200 ~~~l~~~L~~L~l~~N~l~~l~~~~~ 225 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQTSVTALPSKGL 225 (239)
T ss_dssp TTTCSBCCSEEECTTCCCCCCCCTTC
T ss_pred hhccccCCcEEECCCCccccCChhHh
Confidence 8888 999999999999887655433
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=9.9e-17 Score=149.27 Aligned_cols=172 Identities=17% Similarity=0.118 Sum_probs=100.0
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC------------------CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD------------------LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLC 72 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~------------------l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n 72 (366)
+..+++|++|+|++|.+.+ ++. ...+++|++|++++|.+.+..+..++.+++|++|+|++|
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQE-LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp ETTCTTCCEEECCSSEEEE-EEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS
T ss_pred hhhcCCCCEEECcCCcccc-ccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC
Confidence 3456677777777766532 111 012334444444444443333334444555555555555
Q ss_pred cccCccchhcC-CCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcc
Q 017788 73 KNLNRLPSSLC-ELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFS 151 (366)
Q Consensus 73 ~~~~~lp~~i~-~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~ 151 (366)
.+.+..|..+. .+++|++|++++|.+.. +|. ...+++|+.|++++|.+ ..+|. .+..+++|+.|+++.
T Consensus 155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l-~~l~~--------~~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKL-AFMGP--------EFQSAAGVTWISLRN 223 (317)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEECCSSCC-CEECG--------GGGGGTTCSEEECTT
T ss_pred CCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEECCCCcC-Ccchh--------hhcccCcccEEECcC
Confidence 44333333332 34555555555544332 221 12344555555555432 23333 355678999999999
Q ss_pred cccccCCCCCCceEEeCCcccCChhhhh-cchHHHHHHHHhhhhh
Q 017788 152 FLFSAMSPHNDQYFNLSDCLKLDQNELK-GIAEDALQKIQQKATS 195 (366)
Q Consensus 152 n~l~~~~~~~~~~l~~l~~l~L~~n~l~-~~~~~~~~~l~~L~~~ 195 (366)
|.++. +|..+..+..++.+++++|++. +.++..+..++.++..
T Consensus 224 N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 224 NKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp SCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred Ccccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 99997 7778889999999999999998 7778888877777644
No 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.65 E-value=2.3e-16 Score=158.08 Aligned_cols=55 Identities=15% Similarity=0.064 Sum_probs=37.2
Q ss_pred CCCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcch--HHHHHHHHhhh
Q 017788 139 RRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIA--EDALQKIQQKA 193 (366)
Q Consensus 139 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~--~~~~~~l~~L~ 193 (366)
..+++|+.|+++.|.+++..|..++.+..++.+++++|.++++. |..+.++++|+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 406 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC
Confidence 44567777777777777767777777777777888877777633 34455555554
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.64 E-value=5.6e-16 Score=155.25 Aligned_cols=161 Identities=16% Similarity=0.124 Sum_probs=127.5
Q ss_pred CCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCcc--ccCccccCCcCCcEEecccccccCccchh-cCCCCC
Q 017788 12 KNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLV--ETHSSIQYLSKLVTLDMRLCKNLNRLPSS-LCELIS 87 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~--~~p~~i~~L~~L~~L~L~~n~~~~~lp~~-i~~l~~ 87 (366)
+.+++|++|++++|++.+..|. +.++++|++|++++|.+.+ .+|..++.+++|++|++++|.+.+.+|.. +..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 6778888999998888776775 8888899999998886554 34566888889999999988876656654 667888
Q ss_pred CcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEe
Q 017788 88 LQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNL 167 (366)
Q Consensus 88 L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 167 (366)
|++|++++|.+.+..|..+. ++|+.|++++|+ ++.+|. .+.++++|+.|+++.|.++...+..+..+..
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~--------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 498 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPK--------DVTHLQALQELNVASNQLKSVPDGVFDRLTS 498 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCT--------TTTSSCCCSEEECCSSCCCCCCTTSTTTCTT
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccCh--------hhcCCCCCCEEECCCCCCCCCCHHHHhcCCC
Confidence 99999998887766665443 688899998884 457776 5668899999999999999744444889999
Q ss_pred CCcccCChhhhhcchH
Q 017788 168 SDCLKLDQNELKGIAE 183 (366)
Q Consensus 168 l~~l~L~~n~l~~~~~ 183 (366)
++.+++++|++.+..+
T Consensus 499 L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 499 LQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCCEECCSCCBCCCHH
T ss_pred CCEEEecCCCcCCCcc
Confidence 9999999999987543
No 76
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=3e-16 Score=156.42 Aligned_cols=176 Identities=19% Similarity=0.113 Sum_probs=143.1
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccC-ccchhcCCCCCC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN-RLPSSLCELISL 88 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~-~lp~~i~~l~~L 88 (366)
++++++|++|+|++|++.+..|+ |+++++|++|+|++|.+.+..|..++.+++|++|++++|.+.+ ..|..++++++|
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 67899999999999999776665 9999999999999997776666679999999999999999665 467789999999
Q ss_pred cEEEeeCCCCCCcch-HHHhccCCCcEEcccccccccccCCCC---CCccEEecC-------------CCcCCccccCcc
Q 017788 89 QRLYLSGCSNLRRIP-ESIINLSKLELLHLKNCSKLLSLPELP---CNLFSVGVR-------------RCTSLEALSSFS 151 (366)
Q Consensus 89 ~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~L~~n~~l~~lp~l~---~~L~~L~l~-------------~~~~L~~L~l~~ 151 (366)
++|++++|...+.+| ..+.++++|++|++++|.+.+..|... .+|+.|++. .+++|+.|+++.
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEES
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccC
Confidence 999999998677776 579999999999999998877777654 345566543 478999999999
Q ss_pred cccccCC--C-CCCceEEeCCcccCChhhhhcchHHHH
Q 017788 152 FLFSAMS--P-HNDQYFNLSDCLKLDQNELKGIAEDAL 186 (366)
Q Consensus 152 n~l~~~~--~-~~~~~l~~l~~l~L~~n~l~~~~~~~~ 186 (366)
|.+++.. + .....+..++.+++++|.+.+..+..+
T Consensus 206 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 243 (549)
T 2z81_A 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243 (549)
T ss_dssp CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred CccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence 9988732 1 223456678888888888876655554
No 77
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=1.1e-15 Score=133.16 Aligned_cols=141 Identities=14% Similarity=0.096 Sum_probs=118.6
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
++++++|++|++++|++.+..+. +.++++|++|++++|.+.+..+..++.+++|++|+|++|.+.+..+..+..+++|+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 127 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCC
Confidence 56889999999999998655555 79999999999999977655555679999999999999996655555678999999
Q ss_pred EEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEE
Q 017788 90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFN 166 (366)
Q Consensus 90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 166 (366)
+|++++|.+.+..+..+..+++|+.|++++|... ..|++|+.|++..|.+++.+|..++.+.
T Consensus 128 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---------------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---------------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred EEECCCCccceeCHHHhccCCCccEEEecCCCee---------------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 9999999887666666899999999999999543 3466799999999999998998877655
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=1.6e-16 Score=156.72 Aligned_cols=171 Identities=16% Similarity=0.109 Sum_probs=100.0
Q ss_pred cCCCCCCCEEeccCCCCCCCCCC-----------------CCCCCCCcEEecccCCCccccCccccCCcCCcEEeccccc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPD-----------------LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCK 73 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~-----------------l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~ 73 (366)
+..+++|++|+|++|.+.+..+. ...+++|+.|+|++|.+.+..|..++.+++|++|+|++|.
T Consensus 76 l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (487)
T 3oja_A 76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (487)
T ss_dssp CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC
T ss_pred cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC
Confidence 34566666666666655321111 0123445555555554444444455555555555555555
Q ss_pred ccCccchhcC-CCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccc
Q 017788 74 NLNRLPSSLC-ELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSF 152 (366)
Q Consensus 74 ~~~~lp~~i~-~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n 152 (366)
+.+..|..+. .+++|++|+|++|.+.+. |. ...+++|+.|+|++|.+ ..+|. .+..+++|+.|+++.|
T Consensus 156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l-~~~~~--------~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKL-AFMGP--------EFQSAAGVTWISLRNN 224 (487)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCC-CEECG--------GGGGGTTCSEEECTTS
T ss_pred CCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCC-CCCCH--------hHcCCCCccEEEecCC
Confidence 4444444443 455555555555543322 21 22355555555555533 23333 3456788999999999
Q ss_pred ccccCCCCCCceEEeCCcccCChhhhh-cchHHHHHHHHhhh
Q 017788 153 LFSAMSPHNDQYFNLSDCLKLDQNELK-GIAEDALQKIQQKA 193 (366)
Q Consensus 153 ~l~~~~~~~~~~l~~l~~l~L~~n~l~-~~~~~~~~~l~~L~ 193 (366)
.+++ +|..+..+..+..+++++|++. +.+|..+..++.+.
T Consensus 225 ~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 225 KLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp CCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred cCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence 9988 7777888889999999999987 56677776666665
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=4.2e-16 Score=144.52 Aligned_cols=165 Identities=15% Similarity=0.066 Sum_probs=130.7
Q ss_pred CCCCCCEEeccCCCCCCCCCC-C--CCCCCCcEEecccCCCccccC----ccccCCcCCcEEecccccccCccchhcCCC
Q 017788 13 NLVNLKEIDLSYSRQLKKLPD-L--SQARNLENLLLKACSSLVETH----SSIQYLSKLVTLDMRLCKNLNRLPSSLCEL 85 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~-l--~~l~~L~~L~L~~n~~~~~~p----~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l 85 (366)
.+++|++|++++|.+.+..|. + ..+++|++|+|++|.+.+..+ ..+..+++|++|+|++|.+.+..|..++.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 356799999999999888886 6 899999999999998776544 345679999999999999877777889999
Q ss_pred CCCcEEEeeCCCCCCc--ch--HHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCC
Q 017788 86 ISLQRLYLSGCSNLRR--IP--ESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHN 161 (366)
Q Consensus 86 ~~L~~L~Ls~n~~~~~--lp--~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~ 161 (366)
++|++|+|++|.+.+. ++ ..++.+++|++|++++|.+ +.+|..+.. .+.++++|+.|+++.|.+.+..|..
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~----l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAA----LAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHH----HHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHH----HHhcCCCCCEEECCCCCCCccchhh
Confidence 9999999999976542 22 2236889999999999965 444431100 1356789999999999999976777
Q ss_pred CceE---EeCCcccCChhhhhcch
Q 017788 162 DQYF---NLSDCLKLDQNELKGIA 182 (366)
Q Consensus 162 ~~~l---~~l~~l~L~~n~l~~~~ 182 (366)
+..+ ..++.++|++|.++.+.
T Consensus 244 ~~~~~~~~~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFAGLEQVP 267 (310)
T ss_dssp CSSCCCCTTCCCEECCSSCCCSCC
T ss_pred HHhccCcCcCCEEECCCCCCCchh
Confidence 7666 58999999999998553
No 80
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.62 E-value=7e-16 Score=150.84 Aligned_cols=160 Identities=14% Similarity=0.060 Sum_probs=106.1
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
+..+++|++|++++|++.+ +| ++.+++|+.|++++|.+.+ + .++.+++|++|++++|++.+ +| ++.+++|+.
T Consensus 166 ~~~l~~L~~L~ls~n~l~~-l~-l~~l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~ 237 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE-LD-VSQNKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTY 237 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC-CC-CTTCTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSE
T ss_pred cccCCcCCEEECCCCccce-ec-cccCCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCcccc-cC--ccccCCCCE
Confidence 4455666777776666643 34 5556666666666654433 2 25555556666666555333 44 445555555
Q ss_pred EEeeCCCCCCcchHH-----------------------------HhccCCCcEEcccccccccccCCCCCCccEEecCCC
Q 017788 91 LYLSGCSNLRRIPES-----------------------------IINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRC 141 (366)
Q Consensus 91 L~Ls~n~~~~~lp~~-----------------------------i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~ 141 (366)
|++++|.+.+..+.. ++.+++|+.|++++|..++.+|....+++.++++++
T Consensus 238 L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~ 317 (457)
T 3bz5_A 238 FDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN 317 (457)
T ss_dssp EECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred EEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhc
Confidence 555555443322211 245577777778887777777766677888889999
Q ss_pred cCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcc
Q 017788 142 TSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGI 181 (366)
Q Consensus 142 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~ 181 (366)
++|+.|+++.|.+++ ++ ++.+..++.+++++|.++++
T Consensus 318 ~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 318 PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp TTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCBC
T ss_pred ccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCCc
Confidence 999999999999998 43 78889999999999999874
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=9.2e-16 Score=142.20 Aligned_cols=151 Identities=19% Similarity=0.198 Sum_probs=126.4
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
+.++++|++|+|++|.+. .++.+..+++|++|++++|.+. .++ .+..+++|++|++++|.+. .++. +..+++|++
T Consensus 81 ~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~ 155 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQIT-DVT-PLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQY 155 (308)
T ss_dssp GTTCCSCCEEECCSCCCS-CCGGGTTCTTCCEEECTTSCCC-CCG-GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCE
T ss_pred HccCCCCCEEEccCCcCC-CchhhcCCCCCCEEECCCCCCC-Cch-hhcCCCCCCEEECCCCccC-cCcc-ccCCCCccE
Confidence 567899999999999974 5677999999999999999654 455 4899999999999999854 4444 889999999
Q ss_pred EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788 91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC 170 (366)
Q Consensus 91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~ 170 (366)
|++++|.+.. ++. +..+++|+.|++++|.+ ..++. +..+++|+.|+++.|.+.+.. .+..+..++.
T Consensus 156 L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l-~~~~~---------l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~ 221 (308)
T 1h6u_A 156 LSIGNAQVSD-LTP-LANLSKLTTLKADDNKI-SDISP---------LASLPNLIEVHLKNNQISDVS--PLANTSNLFI 221 (308)
T ss_dssp EECCSSCCCC-CGG-GTTCTTCCEEECCSSCC-CCCGG---------GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCE
T ss_pred EEccCCcCCC-Chh-hcCCCCCCEEECCCCcc-CcChh---------hcCCCCCCEEEccCCccCccc--cccCCCCCCE
Confidence 9999997664 554 89999999999999955 44442 677899999999999998844 3778889999
Q ss_pred ccCChhhhhc
Q 017788 171 LKLDQNELKG 180 (366)
Q Consensus 171 l~L~~n~l~~ 180 (366)
+++++|++++
T Consensus 222 L~l~~N~i~~ 231 (308)
T 1h6u_A 222 VTLTNQTITN 231 (308)
T ss_dssp EEEEEEEEEC
T ss_pred EEccCCeeec
Confidence 9999998875
No 82
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.61 E-value=3.3e-15 Score=140.25 Aligned_cols=174 Identities=20% Similarity=0.202 Sum_probs=98.9
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
+.++++|++|++++|.+. .++.+..+++|++|++++|.....++ .+..+++|++|++++|.+.. ++. +..+++|++
T Consensus 106 ~~~l~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~ 181 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYS 181 (347)
T ss_dssp GTTCTTCSEEECTTSCCC-CCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSE
T ss_pred HcCCCcCCEEECcCCccc-CchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-chh-hccCCCCCE
Confidence 445667777777777663 33346666666666666664444333 24555555555555554222 221 334444444
Q ss_pred EEeeCC----------------------CCCCcchHHHhccCCCcEEcccccccccccCC--CCCCccEEecC-------
Q 017788 91 LYLSGC----------------------SNLRRIPESIINLSKLELLHLKNCSKLLSLPE--LPCNLFSVGVR------- 139 (366)
Q Consensus 91 L~Ls~n----------------------~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~--l~~~L~~L~l~------- 139 (366)
|++++| .+....+ +..+++|+.|++++|.+. .++. ..++|+.|+++
T Consensus 182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCCCCC
T ss_pred EEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcchhcCCCCCEEECCCCccCCC
Confidence 444444 3332222 556666666666666432 2222 12445555543
Q ss_pred ----CCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 140 ----RCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 140 ----~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
.+++|+.|+++.|.++. + ..+..+..++.+++++|.+.+..+..+.+++.|+
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 35677777777777766 3 3466777788888888888877777777666664
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=4.8e-16 Score=142.98 Aligned_cols=152 Identities=23% Similarity=0.212 Sum_probs=126.3
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
++.+++|++|++++|.+ ..++.+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+ ..+|. +..+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i-~~~~~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKV-KDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC-CCGGG-GTTCTTCCE
T ss_pred hhhcCcccEEEccCCCc-ccChhHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcC-CCChh-hccCCCCCE
Confidence 45688899999999987 456779999999999999996654 444 89999999999999984 44554 889999999
Q ss_pred EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788 91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC 170 (366)
Q Consensus 91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~ 170 (366)
|++++|.+.. + +.+..+++|+.|++++|.+. .++ .+.++++|+.|+++.|.+++..+ +..+..|+.
T Consensus 117 L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~~---------~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 117 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DIT---------VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCCEEECCSSCCC-CCG---------GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred EECCCCcCCC-C-hhhcCCCCCCEEEccCCcCC-cch---------hhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence 9999997665 4 46889999999999999653 443 57788999999999999988444 788899999
Q ss_pred ccCChhhhhcc
Q 017788 171 LKLDQNELKGI 181 (366)
Q Consensus 171 l~L~~n~l~~~ 181 (366)
+++++|.++++
T Consensus 183 L~L~~N~i~~l 193 (291)
T 1h6t_A 183 LYLSKNHISDL 193 (291)
T ss_dssp EECCSSCCCBC
T ss_pred EECCCCcCCCC
Confidence 99999998875
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=1.3e-15 Score=140.18 Aligned_cols=151 Identities=22% Similarity=0.202 Sum_probs=125.6
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
++.+++|++|+|++|++.+..+ +.++++|++|++++|.+. .++ .++.+++|++|++++|.+.. + +.+..+++|++
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~ 138 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLES 138 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCE
T ss_pred HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC-CCh-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCE
Confidence 5678999999999999865444 999999999999999654 444 59999999999999998544 4 46789999999
Q ss_pred EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788 91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC 170 (366)
Q Consensus 91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~ 170 (366)
|++++|.+.+. ..+..+++|+.|++++|.+ ..++ .+.++++|+.|+++.|.++. ++ .+..+..|+.
T Consensus 139 L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l-~~~~---------~l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~ 204 (291)
T 1h6t_A 139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQI-SDIV---------PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDV 204 (291)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCC-CCCG---------GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSE
T ss_pred EEccCCcCCcc--hhhccCCCCCEEEccCCcc-ccch---------hhcCCCccCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 99999977654 5789999999999999965 3443 26778999999999999988 44 3788889999
Q ss_pred ccCChhhhhc
Q 017788 171 LKLDQNELKG 180 (366)
Q Consensus 171 l~L~~n~l~~ 180 (366)
+++++|++..
T Consensus 205 L~l~~n~i~~ 214 (291)
T 1h6t_A 205 LELFSQECLN 214 (291)
T ss_dssp EEEEEEEEEC
T ss_pred EECcCCcccC
Confidence 9999998764
No 85
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=1.6e-15 Score=143.64 Aligned_cols=165 Identities=18% Similarity=0.036 Sum_probs=135.5
Q ss_pred CCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCcccc-CCcCCcEEecccccccCccchhcCCCCCCcEEEee
Q 017788 17 LKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQ-YLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLS 94 (366)
Q Consensus 17 L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~-~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls 94 (366)
-++++++++.+ ..+|. +. +.++.|+|++|.+.+..+..+. .+++|++|+|++|.+.+..|..+..+++|++|+|+
T Consensus 20 ~~~l~c~~~~l-~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQL-PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCC-SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCc-CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 36899999887 45664 43 4689999999977666666676 99999999999999666666789999999999999
Q ss_pred CCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCC---ceEEeCCcc
Q 017788 95 GCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHND---QYFNLSDCL 171 (366)
Q Consensus 95 ~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~l~~l 171 (366)
+|.+....+..|.++++|+.|+|++|.+....|. .+.++++|+.|+++.|.++...+..+ ..+..|+.|
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~--------~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN--------AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT--------TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH--------HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence 9987766666799999999999999977655565 67888999999999999998544444 568899999
Q ss_pred cCChhhhhcchHHHHHHHHhh
Q 017788 172 KLDQNELKGIAEDALQKIQQK 192 (366)
Q Consensus 172 ~L~~n~l~~~~~~~~~~l~~L 192 (366)
+|++|.++++.+..+..++.+
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~ 189 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAW 189 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHH
T ss_pred ECCCCCCCccCHHHhhhccHh
Confidence 999999999888888777654
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=3.1e-16 Score=154.55 Aligned_cols=157 Identities=20% Similarity=0.082 Sum_probs=96.0
Q ss_pred CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchh-----------
Q 017788 14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS----------- 81 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~----------- 81 (366)
+++|++|+|++|.+.+..|. |..+++|++|+|++|.+.+..| ++.+++|++|+|++|.+.+ +|..
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~~~~L~~L~L~~N 109 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLVGPSIETLHAANN 109 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EEECTTCCEEECCSS
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CCCCCCcCEEECcCC
Confidence 44677777777776555543 7777777777777775544333 6666666666666665322 2110
Q ss_pred ------cCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecC-CCcCCccccCccccc
Q 017788 82 ------LCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVR-RCTSLEALSSFSFLF 154 (366)
Q Consensus 82 ------i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~-~~~~L~~L~l~~n~l 154 (366)
...+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|. .+. .+++|+.|+++.|.+
T Consensus 110 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA--------ELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG--------GGGGGTTTCCEEECTTSCC
T ss_pred cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH--------HHhhhCCcccEEecCCCcc
Confidence 12467888889988888877787888888999999998877665554 222 345555555555555
Q ss_pred ccCCCCCCceEEeCCcccCChhhhhcchH
Q 017788 155 SAMSPHNDQYFNLSDCLKLDQNELKGIAE 183 (366)
Q Consensus 155 ~~~~~~~~~~l~~l~~l~L~~n~l~~~~~ 183 (366)
++. +. ...+..|..|+|++|.++++.+
T Consensus 182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~ 208 (487)
T 3oja_A 182 YDV-KG-QVVFAKLKTLDLSSNKLAFMGP 208 (487)
T ss_dssp CEE-EC-CCCCTTCCEEECCSSCCCEECG
T ss_pred ccc-cc-cccCCCCCEEECCCCCCCCCCH
Confidence 542 21 1134455555555555554433
No 87
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=3.1e-15 Score=125.84 Aligned_cols=137 Identities=23% Similarity=0.216 Sum_probs=101.8
Q ss_pred CCCCCCCEEeccCCCCC-CCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 12 KNLVNLKEIDLSYSRQL-KKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~-~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
...++|++|++++|.+. +.+|. +..+++|++|++++|.+.. + ..++.+++|++|+|++|.+.+.+|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34578889999988886 56776 6888889999998886544 3 6788888899999988887666777777788888
Q ss_pred EEEeeCCCCCCcch--HHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788 90 RLYLSGCSNLRRIP--ESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA 156 (366)
Q Consensus 90 ~L~Ls~n~~~~~lp--~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~ 156 (366)
+|++++|.+.+ +| ..+..+++|+.|++++|.+.+ +|... .-.+..+++|+.|+++.|.+..
T Consensus 99 ~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~----~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 99 HLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTN-LNDYR----ESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGT-STTHH----HHHHTTCSSCCEETTEETTSCB
T ss_pred EEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcc-hHHHH----HHHHHhCccCcEecCCCCChhh
Confidence 99998886654 43 678888888888888886543 33200 0035677888888888877665
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=8.5e-15 Score=146.47 Aligned_cols=161 Identities=19% Similarity=0.170 Sum_probs=113.7
Q ss_pred CCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEee
Q 017788 15 VNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLS 94 (366)
Q Consensus 15 ~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls 94 (366)
++|++|+|++|.+. .+| ..+++|++|+|++|.+.+ +|. +.. +|++|+|++|.+.+ +|. .+++|+.|+|+
T Consensus 80 ~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINAD 148 (571)
T ss_dssp TTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred CCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCC
Confidence 45777777777764 566 456777777777775544 665 544 77777777777433 665 56777777777
Q ss_pred CCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCc---------CC-------ccccCcccccccCC
Q 017788 95 GCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCT---------SL-------EALSSFSFLFSAMS 158 (366)
Q Consensus 95 ~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~---------~L-------~~L~l~~n~l~~~~ 158 (366)
+|.+.+ +|. .+++|+.|++++|.+ +.+|.+..+|+.|+++++. +| +.|+++.|.++. +
T Consensus 149 ~N~l~~-lp~---~l~~L~~L~Ls~N~L-~~lp~l~~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~-l 222 (571)
T 3cvr_A 149 NNQLTM-LPE---LPTSLEVLSVRNNQL-TFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH-I 222 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCC-C
T ss_pred CCccCc-CCC---cCCCcCEEECCCCCC-CCcchhhCCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCccee-c
Confidence 776554 555 566777777777754 3466655667777665531 45 888999999987 7
Q ss_pred CCCCceEEeCCcccCChhhhhcchHHHHHHHHhh
Q 017788 159 PHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQK 192 (366)
Q Consensus 159 ~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L 192 (366)
|..+..+..+..++|++|++++.+|..+.++...
T Consensus 223 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~ 256 (571)
T 3cvr_A 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256 (571)
T ss_dssp CGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHHS
T ss_pred CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhcC
Confidence 7777778999999999999999989888776653
No 89
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=2e-15 Score=136.76 Aligned_cols=151 Identities=20% Similarity=0.206 Sum_probs=125.8
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
+.++++|++|++++|.+ ..+|.+..+++|++|++++|.+. .++. +..+++|++|+|++|+ +..+|... . ++|++
T Consensus 37 ~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~-~-~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNI-QSLAGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNR-LKNLNGIP-S-ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSC-CSCCTTCC-C-SSCCE
T ss_pred hhhcCcCcEEECcCCCc-ccchHHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCc-cCCcCccc-c-CcccE
Confidence 56789999999999987 56778999999999999999654 4555 9999999999999998 45566543 3 99999
Q ss_pred EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788 91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC 170 (366)
Q Consensus 91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~ 170 (366)
|++++|.+.+ ++ .+..+++|+.|++++|++ +.+| .+..+++|+.|+++.|.+++. ..+..+..++.
T Consensus 111 L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i-~~~~---------~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~ 176 (263)
T 1xeu_A 111 LFLDNNELRD-TD-SLIHLKNLEILSIRNNKL-KSIV---------MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW 176 (263)
T ss_dssp EECCSSCCSB-SG-GGTTCTTCCEEECTTSCC-CBCG---------GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred EEccCCccCC-Ch-hhcCcccccEEECCCCcC-CCCh---------HHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence 9999997664 44 589999999999999964 4444 467889999999999999884 67788999999
Q ss_pred ccCChhhhhcc
Q 017788 171 LKLDQNELKGI 181 (366)
Q Consensus 171 l~L~~n~l~~~ 181 (366)
+++++|.+.+.
T Consensus 177 L~l~~N~~~~~ 187 (263)
T 1xeu_A 177 IDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEECC
T ss_pred EeCCCCcccCC
Confidence 99999988753
No 90
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=2.8e-15 Score=123.57 Aligned_cols=132 Identities=23% Similarity=0.192 Sum_probs=99.5
Q ss_pred CCCCCCCEEeccCCCCC-CCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 12 KNLVNLKEIDLSYSRQL-KKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~-~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
...++|++|++++|.+. +.+|. +..+++|++|++++|.+... ..++.+++|++|++++|.+.+.+|..+..+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 34578999999999886 57776 78899999999999865544 6788899999999999987766888887799999
Q ss_pred EEEeeCCCCCCc-chHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCc
Q 017788 90 RLYLSGCSNLRR-IPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSF 150 (366)
Q Consensus 90 ~L~Ls~n~~~~~-lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~ 150 (366)
+|++++|.+.+. .|..+..+++|++|++++|.+. .+|.... -.+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~----~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRE----NVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHH----HHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHH----HHHHHCCCcccccCC
Confidence 999999876652 3477888999999999998654 3332000 034556677776654
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=3.9e-16 Score=145.84 Aligned_cols=109 Identities=25% Similarity=0.308 Sum_probs=72.5
Q ss_pred CCCCCCEEeccCCCCCCC-CCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccC--ccchhcCCCCCC
Q 017788 13 NLVNLKEIDLSYSRQLKK-LPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN--RLPSSLCELISL 88 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~-~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~--~lp~~i~~l~~L 88 (366)
++++|++|+|++|.+... +|. +..+++|++|++++|......+..++.+++|++|+|++|..++ .+|..+..+++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 457777777777766443 454 6677777777777776655666667777777777777773233 356666677777
Q ss_pred cEEEeeCC-CCCCc-chHHHhccC-CCcEEcccccc
Q 017788 89 QRLYLSGC-SNLRR-IPESIINLS-KLELLHLKNCS 121 (366)
Q Consensus 89 ~~L~Ls~n-~~~~~-lp~~i~~L~-~L~~L~L~~n~ 121 (366)
++|++++| .+... ++..+..++ +|++|++++|.
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 77777777 44432 566667777 77777777763
No 92
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.58 E-value=3.8e-15 Score=150.34 Aligned_cols=162 Identities=23% Similarity=0.166 Sum_probs=137.2
Q ss_pred cCCCCCCCEEeccCCCCCCCCC--CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccC-ccchhcCCCCC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLP--DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN-RLPSSLCELIS 87 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~-~lp~~i~~l~~ 87 (366)
+..+++|+.++++.+......+ .+..+++++.++++.|......+..+..+++|+.|++++|.... ..|..+..+++
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~ 495 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 495 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccc
Confidence 3467788888888777655554 27889999999999998877778888999999999999997554 46778899999
Q ss_pred CcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceE-E
Q 017788 88 LQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYF-N 166 (366)
Q Consensus 88 L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l-~ 166 (366)
|++|+|++|.+.+..|..|.++++|+.|+|++|++.+..|. .+.++++|+.|+++.|++++..|..+..+ .
T Consensus 496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~--------~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 567 (635)
T 4g8a_A 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF--------PYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 567 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCG--------GGTTCTTCCEEECTTSCCCBCCSSCTTCCCT
T ss_pred cCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChh--------HHhCCCCCCEEECCCCcCCCCCHHHHHhhhC
Confidence 99999999998888889999999999999999966544444 57889999999999999999888888887 6
Q ss_pred eCCcccCChhhhhc
Q 017788 167 LSDCLKLDQNELKG 180 (366)
Q Consensus 167 ~l~~l~L~~n~l~~ 180 (366)
.++.++|++|++..
T Consensus 568 ~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 568 SLAFLNLTQNDFAC 581 (635)
T ss_dssp TCCEEECTTCCBCC
T ss_pred cCCEEEeeCCCCcc
Confidence 89999999999874
No 93
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.57 E-value=4.3e-15 Score=139.48 Aligned_cols=164 Identities=17% Similarity=0.179 Sum_probs=128.0
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
+..+++|++|++++|.+. .++.+..+++|+.|++++|..... +. +..+++|++|++++|.+. .+|. +..+++|++
T Consensus 173 ~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~ 247 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIE-DISPLASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKIT-DLSP-LANLSQLTW 247 (347)
T ss_dssp GGGCTTCSEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCE
T ss_pred hccCCCCCEEEccCCccc-ccccccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccC-CCcc-hhcCCCCCE
Confidence 456889999999999884 455588899999999999865543 33 888999999999999854 4554 789999999
Q ss_pred EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788 91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC 170 (366)
Q Consensus 91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~ 170 (366)
|++++|.+.. + +.+..+++|+.|++++|.+ ..+| .+..+++|+.|+++.|.+.+..+..++.+..++.
T Consensus 248 L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l-~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 248 LEIGTNQISD-I-NAVKDLTKLKMLNVGSNQI-SDIS---------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp EECCSSCCCC-C-GGGTTCTTCCEEECCSSCC-CCCG---------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred EECCCCccCC-C-hhHhcCCCcCEEEccCCcc-CCCh---------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 9999997664 4 4688899999999999854 4443 4667788888888888887766666777888888
Q ss_pred ccCChhhhhcchHHHHHHHHhhh
Q 017788 171 LKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 171 l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
+++++|++++..| +..++.|+
T Consensus 316 L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 316 LFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp EECCSSSCCCCGG--GGGCTTCS
T ss_pred EEccCCccccccC--hhhhhccc
Confidence 8888888887766 44445443
No 94
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.57 E-value=4.7e-15 Score=144.94 Aligned_cols=159 Identities=16% Similarity=0.086 Sum_probs=78.1
Q ss_pred CCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccc-------------
Q 017788 13 NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP------------- 79 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp------------- 79 (366)
.+++|++|+|++|.+.+ +| ++.+++|++|++++|.+.+ ++ ++.+++|++|++++|.+.+ +|
T Consensus 62 ~l~~L~~L~Ls~n~l~~-~~-~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITT-LD-LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LDVSQNPLLTYLNCA 135 (457)
T ss_dssp GCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CCCTTCTTCCEEECT
T ss_pred ccCCCCEEEccCCcCCe-Ec-cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ecCCCCCcCCEEECC
Confidence 44455555555555433 22 4445555555555543322 22 4444455555555444222 22
Q ss_pred ------hhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccC-CCCCCccEEe----------cCCCc
Q 017788 80 ------SSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP-ELPCNLFSVG----------VRRCT 142 (366)
Q Consensus 80 ------~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp-~l~~~L~~L~----------l~~~~ 142 (366)
-.++.+++|++|++++|...+.+ .++.+++|+.|++++|.+. .+| ...++|+.|+ +..++
T Consensus 136 ~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~-~l~l~~l~~L~~L~l~~N~l~~~~l~~l~ 212 (457)
T 3bz5_A 136 RNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-ELDVSQNKLLNRLNCDTNNITKLDLNQNI 212 (457)
T ss_dssp TSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC-CCCCTTCTTCCEEECCSSCCSCCCCTTCT
T ss_pred CCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc-eeccccCCCCCEEECcCCcCCeeccccCC
Confidence 01334444444444444333333 2445555555555555332 233 1113344443 33456
Q ss_pred CCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchH
Q 017788 143 SLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAE 183 (366)
Q Consensus 143 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~ 183 (366)
+|+.|+++.|.+++ +| ++.+..++.+++++|.++++.+
T Consensus 213 ~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 213 QLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp TCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred CCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence 67777777777766 44 5566667777777777766543
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=4.7e-15 Score=149.64 Aligned_cols=151 Identities=23% Similarity=0.216 Sum_probs=85.6
Q ss_pred CCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788 12 KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL 91 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L 91 (366)
..+++|+.|++++|.+ ..+|.+..+++|+.|+|++|.+.+ +++ +..+++|+.|+|++|.+ ..+| .+..+++|+.|
T Consensus 40 ~~L~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTCCC-CCCTTGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCCEE
T ss_pred hcCCCCCEEECcCCCC-CCChHHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCC-CCCh-hhccCCCCCEE
Confidence 3456666666666665 344556666666666666664433 332 66666666666666653 3333 45566666666
Q ss_pred EeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcc
Q 017788 92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCL 171 (366)
Q Consensus 92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l 171 (366)
+|++|.+.. + +.+..+++|+.|+|++|.+. .++ .+..+++|+.|+++.|.+.+..| +..+..|+.|
T Consensus 115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~-~l~---------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DIT---------VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCC-CCG---------GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred EecCCCCCC-C-ccccCCCccCEEECCCCccC-Cch---------hhcccCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence 666665443 3 34666666666666666432 222 34455556666666665555333 5555555556
Q ss_pred cCChhhhhcc
Q 017788 172 KLDQNELKGI 181 (366)
Q Consensus 172 ~L~~n~l~~~ 181 (366)
+|++|.++++
T Consensus 181 ~Ls~N~i~~l 190 (605)
T 1m9s_A 181 YLSKNHISDL 190 (605)
T ss_dssp ECCSSCCCBC
T ss_pred ECcCCCCCCC
Confidence 6666555543
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=1.7e-15 Score=152.91 Aligned_cols=152 Identities=21% Similarity=0.161 Sum_probs=127.3
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
++.+++|+.|+|++|.+.+. +.+..+++|+.|+|++|.+. .+| .+..+++|+.|+|++|.+. .+| .+..+++|+.
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~ 135 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLES 135 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTTSCCC-CCG-GGGGCTTCSE
T ss_pred HccCCCCCEEEeeCCCCCCC-hhhccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecCCCCC-CCc-cccCCCccCE
Confidence 56789999999999998654 44999999999999999654 444 7999999999999999954 444 5889999999
Q ss_pred EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788 91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC 170 (366)
Q Consensus 91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~ 170 (366)
|+|++|.+.+. ..+..+++|+.|+|++|.+.. ++ .+..+++|+.|+++.|.+.+ ++ .+..+..|+.
T Consensus 136 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-~~---------~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~ 201 (605)
T 1m9s_A 136 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IV---------PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDV 201 (605)
T ss_dssp EECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC-CG---------GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSE
T ss_pred EECCCCccCCc--hhhcccCCCCEEECcCCcCCC-ch---------hhccCCCCCEEECcCCCCCC-Ch-HHccCCCCCE
Confidence 99999987654 678999999999999996543 33 25678999999999999988 43 5788899999
Q ss_pred ccCChhhhhcc
Q 017788 171 LKLDQNELKGI 181 (366)
Q Consensus 171 l~L~~n~l~~~ 181 (366)
|+|++|++.+.
T Consensus 202 L~L~~N~l~~~ 212 (605)
T 1m9s_A 202 LELFSQECLNK 212 (605)
T ss_dssp EECCSEEEECC
T ss_pred EEccCCcCcCC
Confidence 99999998764
No 97
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.55 E-value=6.2e-15 Score=144.32 Aligned_cols=163 Identities=20% Similarity=0.204 Sum_probs=102.3
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
+.++++|++|++++|.+.+..| ++.+++|+.|++++|... .+ +.+..+++|+.|++++|.+.+..| +..+++|+.
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 269 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK-DI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcc-cc-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCE
Confidence 3456788888888887754433 677788888888887543 33 356777788888888777544333 667777888
Q ss_pred EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCC--CCCccEEecC-----------CCcCCccccCcccccccC
Q 017788 91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL--PCNLFSVGVR-----------RCTSLEALSSFSFLFSAM 157 (366)
Q Consensus 91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l--~~~L~~L~l~-----------~~~~L~~L~l~~n~l~~~ 157 (366)
|++++|.+.+. |. +..+++|+.|++++|++.+ ++.+ .++|+.|+++ .+++|+.|+++.|.+++.
T Consensus 270 L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 270 LKLGANQISNI-SP-LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp EECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred EECCCCccCcc-cc-ccCCCccCeEEcCCCcccC-chhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc
Confidence 88877765543 33 6777777777777775433 3321 1233333332 345566666666666552
Q ss_pred CCCCCceEEeCCcccCChhhhhcchH
Q 017788 158 SPHNDQYFNLSDCLKLDQNELKGIAE 183 (366)
Q Consensus 158 ~~~~~~~l~~l~~l~L~~n~l~~~~~ 183 (366)
..+..+..++.+++++|.+++..|
T Consensus 347 --~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 347 --SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp --GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred --hhhccCCCCCEEeCCCCccCccch
Confidence 245556666666666666666554
No 98
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=1.7e-14 Score=124.26 Aligned_cols=128 Identities=19% Similarity=0.186 Sum_probs=95.8
Q ss_pred CEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCc-cccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeC
Q 017788 18 KEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHS-SIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSG 95 (366)
Q Consensus 18 ~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~-~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~ 95 (366)
+++++++|.+ +.+|. +.. +|++|++++|.+.+..+. .++.+++|++|+|++|.+.+..|..+..+++|++|+|++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 6788888887 56664 433 788888888865444333 378888888888888887777778888888888888888
Q ss_pred CCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788 96 CSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA 156 (366)
Q Consensus 96 n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~ 156 (366)
|.+.+..|..+.++++|++|++++|++.+..|. .+..+++|+.|+++.|.+.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG--------SFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTT--------SSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH--------HhhcCCCCCEEEeCCCCccC
Confidence 887766666788888888888888876666665 56666777777777776554
No 99
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.55 E-value=1.4e-14 Score=141.78 Aligned_cols=161 Identities=22% Similarity=0.157 Sum_probs=108.6
Q ss_pred CCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788 12 KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL 91 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L 91 (366)
+.+++|++|++++|.+. .++.+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+ +|. +..+++|+.|
T Consensus 218 ~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L 292 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNL 292 (466)
T ss_dssp GGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEE
T ss_pred cccCCCCEEECCCCCcc-cchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeE
Confidence 34667777777777763 34556777777777777775543322 6677777777777776443 333 5667777777
Q ss_pred EeeCCCCCCcchHHHhccCCCcEEcccccccccccC-CCCCCccEEec-----------CCCcCCccccCcccccccCCC
Q 017788 92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP-ELPCNLFSVGV-----------RRCTSLEALSSFSFLFSAMSP 159 (366)
Q Consensus 92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp-~l~~~L~~L~l-----------~~~~~L~~L~l~~n~l~~~~~ 159 (366)
++++|.+.+..| +..+++|+.|++++|++.+..| ...++|+.|++ .++++|+.|+++.|.+++..|
T Consensus 293 ~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG
T ss_pred EcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch
Confidence 777776554332 6667777777777765444332 11245555554 457899999999999998665
Q ss_pred CCCceEEeCCcccCChhhhhcc
Q 017788 160 HNDQYFNLSDCLKLDQNELKGI 181 (366)
Q Consensus 160 ~~~~~l~~l~~l~L~~n~l~~~ 181 (366)
+..+..++.+++++|.+++.
T Consensus 371 --~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 371 --LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp --GTTCTTCCEEECCCEEEECC
T ss_pred --hhcCCCCCEEeccCCcccCC
Confidence 78889999999999988763
No 100
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.54 E-value=5e-14 Score=137.52 Aligned_cols=78 Identities=28% Similarity=0.199 Sum_probs=39.4
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
++++++|++|++++|.+.+ +|.+. ++|++|++++|.+. .+| .++.+++|++|++++|++. .+|.. +++|++
T Consensus 191 ~~~l~~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~ 261 (454)
T 1jl5_A 191 LQNLPFLTAIYADNNSLKK-LPDLP--LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDL---PPSLEA 261 (454)
T ss_dssp CTTCTTCCEEECCSSCCSS-CCCCC--TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSC---CTTCCE
T ss_pred ccCCCCCCEEECCCCcCCc-CCCCc--CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-ccccc---ccccCE
Confidence 4456666666666666533 34321 35666666665333 444 3555666666666655532 23331 234444
Q ss_pred EEeeCCC
Q 017788 91 LYLSGCS 97 (366)
Q Consensus 91 L~Ls~n~ 97 (366)
|++++|.
T Consensus 262 L~l~~N~ 268 (454)
T 1jl5_A 262 LNVRDNY 268 (454)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 4444443
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=3.2e-16 Score=146.47 Aligned_cols=162 Identities=17% Similarity=0.139 Sum_probs=119.8
Q ss_pred CCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccc-cCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEe
Q 017788 15 VNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVE-THSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL 93 (366)
Q Consensus 15 ~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~-~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~L 93 (366)
++++.|++++|.+.+..+.+..+++|++|++++|.+... ++..+..+++|++|+|++|.+....|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 789999999999987777788899999999999976555 7888999999999999999977788899999999999999
Q ss_pred eCCC-CCC-cchHHHhccCCCcEEccccc-ccccc-cCCC---CC-CccEEecCCC----------------cCCccccC
Q 017788 94 SGCS-NLR-RIPESIINLSKLELLHLKNC-SKLLS-LPEL---PC-NLFSVGVRRC----------------TSLEALSS 149 (366)
Q Consensus 94 s~n~-~~~-~lp~~i~~L~~L~~L~L~~n-~~l~~-lp~l---~~-~L~~L~l~~~----------------~~L~~L~l 149 (366)
++|. +.. .+|..+.++++|++|++++| .+... ++.. .+ +|++|+++++ ++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 9994 443 37888999999999999999 54432 3331 12 5555555443 24555555
Q ss_pred cccc-cccCCCCCCceEEeCCcccCChh
Q 017788 150 FSFL-FSAMSPHNDQYFNLSDCLKLDQN 176 (366)
Q Consensus 150 ~~n~-l~~~~~~~~~~l~~l~~l~L~~n 176 (366)
+.|. ++...+..+..+..|+.|++++|
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 5554 33333334445555555555554
No 102
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.54 E-value=5.6e-14 Score=142.08 Aligned_cols=81 Identities=26% Similarity=0.277 Sum_probs=61.4
Q ss_pred CCCcEEcccccccccccCCCCCCccEEecCC---------CcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhc
Q 017788 110 SKLELLHLKNCSKLLSLPELPCNLFSVGVRR---------CTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG 180 (366)
Q Consensus 110 ~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~---------~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~ 180 (366)
++|+.|++++|. ++.+|..+++|+.|++++ +++|+.|+++.|.++. +|..+..+..+..++|++|++++
T Consensus 221 ~~L~~L~Ls~N~-L~~lp~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 221 SGLKELIVSGNR-LTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCH
T ss_pred CCCCEEEccCCc-cCcCCCCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCC
Confidence 567777777764 345666667777777665 3568888888888885 67788888899999999999998
Q ss_pred chHHHHHHHHhh
Q 017788 181 IAEDALQKIQQK 192 (366)
Q Consensus 181 ~~~~~~~~l~~L 192 (366)
..+..+.+++..
T Consensus 299 ~~~~~l~~L~~~ 310 (622)
T 3g06_A 299 RTLQALREITSA 310 (622)
T ss_dssp HHHHHHHHHHHS
T ss_pred cCHHHHHhcccc
Confidence 888888776644
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=1.3e-14 Score=122.02 Aligned_cols=136 Identities=17% Similarity=0.156 Sum_probs=114.4
Q ss_pred CCCCCcEEecccCCCc-cccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcE
Q 017788 36 QARNLENLLLKACSSL-VETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLEL 114 (366)
Q Consensus 36 ~l~~L~~L~L~~n~~~-~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~ 114 (366)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.. + ..+..+++|++|++++|.+.+.+|..+.++++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 4578999999999765 5888889999999999999999544 4 77889999999999999988779999999999999
Q ss_pred EcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCC---CCCceEEeCCcccCChhhhhc
Q 017788 115 LHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSP---HNDQYFNLSDCLKLDQNELKG 180 (366)
Q Consensus 115 L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~l~~l~L~~n~l~~ 180 (366)
|++++|.+ +.+|... .+.++++|+.|+++.|.+++..+ ..+..+..++.++++.|.+..
T Consensus 100 L~Ls~N~l-~~~~~~~------~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKL-KDISTLE------PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSC-CSSGGGG------GGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCcc-CcchhHH------HHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999955 5544110 67789999999999999998443 377888999999999887754
No 104
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=1.5e-14 Score=119.06 Aligned_cols=128 Identities=16% Similarity=0.101 Sum_probs=105.1
Q ss_pred CCCCCcEEecccCCCc-cccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcE
Q 017788 36 QARNLENLLLKACSSL-VETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLEL 114 (366)
Q Consensus 36 ~l~~L~~L~L~~n~~~-~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~ 114 (366)
..++|+.|++++|.+. +.+|..++.+++|++|++++|.+.+. ..++.+++|++|++++|.+.+.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999999776 58898899999999999999985544 77889999999999999988779999999999999
Q ss_pred EcccccccccccC--CCCCCccEEecCCCcCCccccCcccccccCCC---CCCceEEeCCcccCC
Q 017788 115 LHLKNCSKLLSLP--ELPCNLFSVGVRRCTSLEALSSFSFLFSAMSP---HNDQYFNLSDCLKLD 174 (366)
Q Consensus 115 L~L~~n~~l~~lp--~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~l~~l~L~ 174 (366)
|++++|.+. .+| . .+.++++|+.|+++.|.+++..+ ..+..+..++.++++
T Consensus 93 L~ls~N~i~-~~~~~~--------~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIK-DLSTIE--------PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCC-SHHHHG--------GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCC-ChHHHH--------HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999654 332 4 57788899999999998887433 356666667666664
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=3.4e-16 Score=149.46 Aligned_cols=162 Identities=14% Similarity=0.081 Sum_probs=100.0
Q ss_pred cCCCCCCCEEeccCCCC---CCCCCC-C-------CCCCCCcEEecccCCCcc----ccCccccCCcCCcEEeccccccc
Q 017788 11 LKNLVNLKEIDLSYSRQ---LKKLPD-L-------SQARNLENLLLKACSSLV----ETHSSIQYLSKLVTLDMRLCKNL 75 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~---~~~~p~-l-------~~l~~L~~L~L~~n~~~~----~~p~~i~~L~~L~~L~L~~n~~~ 75 (366)
+.++++|++|+|++|.+ .+.+|. + ..+++|++|+|++|.+.. .+|..+..+++|++|+|++|.+.
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 34688888888888643 233442 3 678888888888887655 36777888888888888888864
Q ss_pred Cc----cchhcCCC---------CCCcEEEeeCCCCC-Ccch---HHHhccCCCcEEccccccccc-----ccCCCCCCc
Q 017788 76 NR----LPSSLCEL---------ISLQRLYLSGCSNL-RRIP---ESIINLSKLELLHLKNCSKLL-----SLPELPCNL 133 (366)
Q Consensus 76 ~~----lp~~i~~l---------~~L~~L~Ls~n~~~-~~lp---~~i~~L~~L~~L~L~~n~~l~-----~lp~l~~~L 133 (366)
.. ++..+..+ ++|++|++++|.+. ..+| ..+..+++|++|++++|.+.. .+|.
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~----- 210 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE----- 210 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH-----
Confidence 33 33333334 78888888888765 3455 467778888888888885541 2231
Q ss_pred cEEecCCCcCCccccCcccccc----cCCCCCCceEEeCCcccCChhhhhc
Q 017788 134 FSVGVRRCTSLEALSSFSFLFS----AMSPHNDQYFNLSDCLKLDQNELKG 180 (366)
Q Consensus 134 ~~L~l~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~l~~l~L~~n~l~~ 180 (366)
.+.++++|+.|+++.|.++ ..+|..+..++.|+.|+|++|.+.+
T Consensus 211 ---~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 211 ---GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp ---TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred ---HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 2334444555555555442 2233333444444455555554443
No 106
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.51 E-value=5.8e-14 Score=120.96 Aligned_cols=112 Identities=18% Similarity=0.070 Sum_probs=100.2
Q ss_pred CCCCCEEeccCCCCCCCCCC--CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788 14 LVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL 91 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L 91 (366)
..+|++|+|++|++.+..+. +..+++|++|+|++|.+.+..|..++.+++|++|+|++|.+.+..|..+..+++|++|
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 34899999999999766664 8999999999999998888778999999999999999999777777778999999999
Q ss_pred EeeCCCCCCcchHHHhccCCCcEEcccccccccc
Q 017788 92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLS 125 (366)
Q Consensus 92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~ 125 (366)
+|++|.+.+..|..+..+++|++|++++|.+...
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 9999999888899999999999999999976543
No 107
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=2.6e-15 Score=154.78 Aligned_cols=114 Identities=21% Similarity=0.221 Sum_probs=70.6
Q ss_pred cCCCCCCCEEeccCCCCCCCCC-CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLP-DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
+..++.|++|+|++|.+. .+| .+.++++|++|+|++|.+. .+|..++.|++|++|+|++|.+. .+|..++.+++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence 345566666666666664 444 3556666666666666443 66666666666666666666633 5666666666666
Q ss_pred EEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCC
Q 017788 90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPE 128 (366)
Q Consensus 90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~ 128 (366)
+|+|++|.+ +.+|..|++|++|+.|+|++|.+.+.+|.
T Consensus 297 ~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 297 YFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp EEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred EEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChH
Confidence 666666644 35666666666666666666665555443
No 108
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.50 E-value=1.7e-13 Score=133.87 Aligned_cols=132 Identities=24% Similarity=0.221 Sum_probs=75.4
Q ss_pred CCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCC--------
Q 017788 15 VNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELI-------- 86 (366)
Q Consensus 15 ~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~-------- 86 (366)
++|++|++++|.+.+ +|+++++++|++|++++|.+. .+|..+ .+|++|++++|.+. .+| .++.++
T Consensus 131 ~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCcCc-ccCCCc---ccccEEECcCCcCC-cCc-cccCCCCCCEEECC
Confidence 466666666666643 556666666666666666433 233321 24444444444422 233 233344
Q ss_pred ------------CCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCC---------cCCc
Q 017788 87 ------------SLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRC---------TSLE 145 (366)
Q Consensus 87 ------------~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~---------~~L~ 145 (366)
+|++|++++|.+. .+| .++.+++|++|++++|++ ..+|..+.+|+.|+++++ ++|+
T Consensus 204 ~N~l~~l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l-~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~ 280 (454)
T 1jl5_A 204 NNSLKKLPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLL-KTLPDLPPSLEALNVRDNYLTDLPELPQSLT 280 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCC-SSCCSCCTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred CCcCCcCCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcC-CcccccccccCEEECCCCcccccCcccCcCC
Confidence 4445555554333 455 367777788888877744 456666677777776543 4567
Q ss_pred cccCccccccc
Q 017788 146 ALSSFSFLFSA 156 (366)
Q Consensus 146 ~L~l~~n~l~~ 156 (366)
.|+++.|.+++
T Consensus 281 ~L~ls~N~l~~ 291 (454)
T 1jl5_A 281 FLDVSENIFSG 291 (454)
T ss_dssp EEECCSSCCSE
T ss_pred EEECcCCccCc
Confidence 77777777665
No 109
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.50 E-value=5.4e-15 Score=137.48 Aligned_cols=151 Identities=12% Similarity=0.015 Sum_probs=118.9
Q ss_pred CCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccc-cCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788 12 KNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSI-QYLSKLVTLDMRLCKNLNRLPSSLCELISLQ 89 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i-~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 89 (366)
..+++|++|++++|++.+..+. +..+++|++|++++|.+.+..+..+ ..+++|++|+|++|. +..+|... .+++|+
T Consensus 117 ~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~l~~L~ 194 (317)
T 3o53_A 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQV-VFAKLK 194 (317)
T ss_dssp CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCC-CCTTCC
T ss_pred cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccccc-ccccCC
Confidence 4567899999999998766664 8899999999999998777666666 479999999999999 45555443 699999
Q ss_pred EEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccc-cCCCCCCceEEeC
Q 017788 90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFS-AMSPHNDQYFNLS 168 (366)
Q Consensus 90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~l 168 (366)
+|++++|.+. .+|..+..+++|+.|++++|.+ +.+|. .+..+++|+.|+++.|.+. +.++..+..+..+
T Consensus 195 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l-~~l~~--------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-VLIEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp EEECCSSCCC-EECGGGGGGTTCSEEECTTSCC-CEECT--------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred EEECCCCcCC-cchhhhcccCcccEEECcCCcc-cchhh--------HhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 9999999766 5667799999999999999955 56777 6778899999999999887 3344444444444
Q ss_pred CcccCC
Q 017788 169 DCLKLD 174 (366)
Q Consensus 169 ~~l~L~ 174 (366)
+.+++.
T Consensus 265 ~~l~l~ 270 (317)
T 3o53_A 265 QTVAKQ 270 (317)
T ss_dssp HHHHHH
T ss_pred eEEECC
Confidence 444443
No 110
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=2e-14 Score=148.20 Aligned_cols=125 Identities=23% Similarity=0.256 Sum_probs=76.3
Q ss_pred ccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCC
Q 017788 53 ETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCN 132 (366)
Q Consensus 53 ~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~ 132 (366)
..+..+..+++|+.|+|++|. +..+|..++.+++|++|+|++|.+. .+|..|++|++|+.|+|++|.+. .+|.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~---- 287 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPA---- 287 (727)
T ss_dssp -------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCS----
T ss_pred cChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccCh----
Confidence 345556666666667776666 3356666666666677777666554 66666666666777777666443 5555
Q ss_pred ccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHH
Q 017788 133 LFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKI 189 (366)
Q Consensus 133 L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l 189 (366)
.+.++++|+.|+++.|.++. +|..++.+..|+.|+|++|.+++.+|..+..+
T Consensus 288 ----~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 288 ----ELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp ----SGGGGTTCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred ----hhcCCCCCCEEECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 55666666666666666654 55556666666777777777766666666544
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=1.3e-14 Score=136.72 Aligned_cols=179 Identities=13% Similarity=0.079 Sum_probs=122.5
Q ss_pred CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCc-cccCCcCCcE-EecccccccCccchhcCCCCCCcEE
Q 017788 15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHS-SIQYLSKLVT-LDMRLCKNLNRLPSSLCELISLQRL 91 (366)
Q Consensus 15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~-~i~~L~~L~~-L~L~~n~~~~~lp~~i~~l~~L~~L 91 (366)
+++++|+|++|++....++ |.++++|++|+|++|.+.+.+|. ++.++++|+. +.++.|++....|..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 5788999999888543334 88899999999998877676654 5678888765 4455566444446677888889999
Q ss_pred EeeCCCCCCcchHHHhccCCCcEEcccccccccccCCC-----CCCccEEecC------------CCcCCccccCcc-cc
Q 017788 92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL-----PCNLFSVGVR------------RCTSLEALSSFS-FL 153 (366)
Q Consensus 92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l-----~~~L~~L~l~------------~~~~L~~L~l~~-n~ 153 (366)
++++|.+....+..+....++..|++.++..+..+|.. ...++.|+++ ...+|+.+.+.. |.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 88888766554445555666777777665555555531 2334444443 234677777764 66
Q ss_pred cccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 154 FSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 154 l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
++.+.+..++.+..|+.+++++|+++.+.+..+.+++.|.
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 229 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhh
Confidence 7765556788899999999999998877666665555553
No 112
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=4.1e-14 Score=120.03 Aligned_cols=133 Identities=15% Similarity=0.108 Sum_probs=93.4
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCC-CCcEEecccCCCccccCccccCCcCCcEEecccccccCccchh-cCCCCCC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQAR-NLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS-LCELISL 88 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~-~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~-i~~l~~L 88 (366)
+.++.+|++|++++|.+. .+|.+..+. +|++|++++|.+.+ + +.++.+++|++|+|++|.+. .+|.. +..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence 456788889999988875 557765555 88999998886554 4 57888888888888888844 45544 4788888
Q ss_pred cEEEeeCCCCCCcchH--HHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccc
Q 017788 89 QRLYLSGCSNLRRIPE--SIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFL 153 (366)
Q Consensus 89 ~~L~Ls~n~~~~~lp~--~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~ 153 (366)
++|++++|.+ +.+|. .+..+++|+.|++++|.+ ..+|.. +...+..+++|+.|+++.|.
T Consensus 91 ~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~----~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSL-VELGDLDPLASLKSLTYLCILRNPV-TNKKHY----RLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGG-GGSTTH----HHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCC-CCcHhH----HHHHHHHCCccceeCCCcCC
Confidence 8888888865 45666 778888888888888854 345540 00014556666666665554
No 113
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.49 E-value=4.6e-14 Score=142.72 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=50.4
Q ss_pred CCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEee
Q 017788 15 VNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLS 94 (366)
Q Consensus 15 ~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls 94 (366)
++|++|+|++|.+. .+|. .+++|++|+|++|.+ +.+|. .+++|++|+|++|. +..+|. .+++|+.|+++
T Consensus 61 ~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQL-TSLPV---LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC--CCTTCCEEEECSCCC-SCCCC---CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCCCCC-CCCC--cCCCCCEEEcCCCcC-CcCCC---CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECC
Confidence 45666666666553 3444 355666666666543 34443 45555555555555 233333 33444555554
Q ss_pred CCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEe
Q 017788 95 GCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVG 137 (366)
Q Consensus 95 ~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~ 137 (366)
+|.+. .+|.. +++|++|++++|. +..+|..+.+|+.|.
T Consensus 130 ~N~l~-~lp~~---l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~ 167 (622)
T 3g06_A 130 GNQLT-SLPVL---PPGLQELSVSDNQ-LASLPALPSELCKLW 167 (622)
T ss_dssp SSCCS-CCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEE
T ss_pred CCCCC-cCCCC---CCCCCEEECcCCc-CCCcCCccCCCCEEE
Confidence 44332 23321 2444444444442 233343344444443
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=1.7e-13 Score=124.07 Aligned_cols=129 Identities=22% Similarity=0.136 Sum_probs=106.4
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
++.+++|++|+|++|.+.+..+ +.++++|++|++++|.+. .+|... . ++|++|+|++|.+. .+| .+..+++|+.
T Consensus 59 l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~-~l~~~~-~-~~L~~L~L~~N~l~-~~~-~l~~l~~L~~ 132 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK-NLNGIP-S-ACLSRLFLDNNELR-DTD-SLIHLKNLEI 132 (263)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS-CCTTCC-C-SSCCEEECCSSCCS-BSG-GGTTCTTCCE
T ss_pred HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC-CcCccc-c-CcccEEEccCCccC-CCh-hhcCcccccE
Confidence 5678899999999999865444 999999999999999654 455433 3 99999999999854 455 5889999999
Q ss_pred EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccC
Q 017788 91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAM 157 (366)
Q Consensus 91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~ 157 (366)
|++++|.+.+ +| .+..+++|+.|++++|.+... + .+..+++|+.|+++.|.+...
T Consensus 133 L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~---------~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 133 LSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-G---------GLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp EECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-T---------TSTTCCCCCEEEEEEEEEECC
T ss_pred EECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-H---------HhccCCCCCEEeCCCCcccCC
Confidence 9999997654 55 689999999999999965443 3 577889999999999999874
No 115
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.48 E-value=2e-13 Score=117.79 Aligned_cols=126 Identities=19% Similarity=0.159 Sum_probs=94.7
Q ss_pred CEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCC
Q 017788 18 KEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC 96 (366)
Q Consensus 18 ~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n 96 (366)
++++++++.+ ..+|. +. ++|++|++++|.+ ..+|..+..+++|++|+|++|.+.+..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l-~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGL-KVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCC-SSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCC-CcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 5788888877 45664 43 5788999998854 577788888899999999988866666667888889999999988
Q ss_pred CCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccc
Q 017788 97 SNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFS 155 (366)
Q Consensus 97 ~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~ 155 (366)
.+....|..|..+++|+.|+|++|.+. .+|.. .+.++++|+.|+++.|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~-------~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEG-------AFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTT-------TTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCC-eeChh-------hhhcCccccEEEeCCCCee
Confidence 877766777888888888888888543 44431 3556677777777766554
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.46 E-value=2.7e-15 Score=143.22 Aligned_cols=178 Identities=17% Similarity=0.066 Sum_probs=132.0
Q ss_pred cCCCCCCCEEeccCCCCCCC----CC-CCCCCCCCcEEecccCC---CccccCccc-------cCCcCCcEEeccccccc
Q 017788 11 LKNLVNLKEIDLSYSRQLKK----LP-DLSQARNLENLLLKACS---SLVETHSSI-------QYLSKLVTLDMRLCKNL 75 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~----~p-~l~~l~~L~~L~L~~n~---~~~~~p~~i-------~~L~~L~~L~L~~n~~~ 75 (366)
+..+++|++|+|++|.+... ++ .+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 45788999999999988654 22 37789999999999873 233445444 78899999999999976
Q ss_pred C----ccchhcCCCCCCcEEEeeCCCCCCcch----HHHhcc---------CCCcEEcccccccc-cccCCCCCCccEEe
Q 017788 76 N----RLPSSLCELISLQRLYLSGCSNLRRIP----ESIINL---------SKLELLHLKNCSKL-LSLPELPCNLFSVG 137 (366)
Q Consensus 76 ~----~lp~~i~~l~~L~~L~Ls~n~~~~~lp----~~i~~L---------~~L~~L~L~~n~~l-~~lp~l~~~L~~L~ 137 (366)
. .+|..+..+++|++|+|++|.+....+ ..+..+ ++|++|++++|.+. ..+|.+.. .
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-----~ 182 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK-----T 182 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH-----H
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH-----H
Confidence 6 488888899999999999998754333 344445 89999999999765 34442110 3
Q ss_pred cCCCcCCccccCccccccc-----CCCCCCceEEeCCcccCChhhhh----cchHHHHHHHHhhh
Q 017788 138 VRRCTSLEALSSFSFLFSA-----MSPHNDQYFNLSDCLKLDQNELK----GIAEDALQKIQQKA 193 (366)
Q Consensus 138 l~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~l~~l~L~~n~l~----~~~~~~~~~l~~L~ 193 (366)
+..+++|+.|+++.|.++. ..+..+..+..|+.|+|++|.++ ..+|..+..++.|+
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 4567789999999888762 24446778889999999999986 45566666666665
No 117
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.46 E-value=3.7e-13 Score=114.10 Aligned_cols=130 Identities=18% Similarity=0.127 Sum_probs=92.8
Q ss_pred CCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCC
Q 017788 17 LKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC 96 (366)
Q Consensus 17 L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n 96 (366)
.+.++++++++ ..+|. .-.++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l-~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGL-TSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCC-SSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCC-ccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 46778887776 34553 12367888888888665544455678888888888888755444445678888888888888
Q ss_pred CCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788 97 SNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA 156 (366)
Q Consensus 97 ~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~ 156 (366)
.+.+..+..+..+++|+.|++++|.+. .+|.. .+.++++|+.|+++.|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~-------~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDG-------IFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTT-------TTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcce-EeCHH-------HhcCCcccCEEEecCCCeec
Confidence 777655566788888888888888554 45541 34667888888888888776
No 118
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.44 E-value=6.5e-13 Score=112.57 Aligned_cols=133 Identities=15% Similarity=0.023 Sum_probs=89.3
Q ss_pred CcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccc
Q 017788 40 LENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN 119 (366)
Q Consensus 40 L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~ 119 (366)
.+.++++++. +..+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSC-CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCC-CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4567777663 44555443 36788888887775544444567778888888888776655555567788888888888
Q ss_pred cccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchH
Q 017788 120 CSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAE 183 (366)
Q Consensus 120 n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~ 183 (366)
|.+.+..+. .+.++++|+.|+++.|.+++..+..+..+..++.+++++|++.+..+
T Consensus 86 N~l~~~~~~--------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNG--------VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTT--------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHH--------HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 755433332 34667778888888887777555556777777788888887776544
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=2.6e-13 Score=135.70 Aligned_cols=156 Identities=24% Similarity=0.283 Sum_probs=123.2
Q ss_pred CCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEee
Q 017788 16 NLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLS 94 (366)
Q Consensus 16 ~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls 94 (366)
+|+.|+|++|.+.+ +|. + .++|++|+|++|.+. .+| ..+++|++|+|++|.+.+ +|. +.. +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999865 665 6 389999999999654 777 568999999999998554 888 655 99999999
Q ss_pred CCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCC---------cCCccccCcccccccCCCCCCceE
Q 017788 95 GCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRC---------TSLEALSSFSFLFSAMSPHNDQYF 165 (366)
Q Consensus 95 ~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~---------~~L~~L~l~~n~l~~~~~~~~~~l 165 (366)
+|.+.+ +|. .+++|+.|++++|.+ +.+|..+.+|+.|+++++ ++|+.|+++.|.++. +|. +..
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l-~~lp~~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~~-lp~-~~~- 200 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQL-TMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLES-LPA-VPV- 200 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CCC-CC--
T ss_pred CCcCCC-CCC---cCccccEEeCCCCcc-CcCCCcCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCCc-hhh-HHH-
Confidence 998765 777 789999999999965 558887788999988776 378899999999886 665 544
Q ss_pred EeC-------CcccCChhhhhcchHHHHHHHHhh
Q 017788 166 NLS-------DCLKLDQNELKGIAEDALQKIQQK 192 (366)
Q Consensus 166 ~~l-------~~l~L~~n~l~~~~~~~~~~l~~L 192 (366)
.+ +.++|++|.++.+ |..+.++++|
T Consensus 201 -~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L 232 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCRENRITHI-PENILSLDPT 232 (571)
T ss_dssp --------CCEEEECCSSCCCCC-CGGGGGSCTT
T ss_pred -hhhcccccceEEecCCCcceec-CHHHhcCCCC
Confidence 56 8889999998864 4444334444
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=5.9e-13 Score=114.78 Aligned_cols=108 Identities=20% Similarity=0.150 Sum_probs=95.0
Q ss_pred CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788 14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY 92 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~ 92 (366)
.++|++|+|++|.+. .+|. +.++++|++|+|++|.+.+..+..+.++++|++|+|++|.+.+..|..|..+++|++|+
T Consensus 30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 468999999999985 6665 99999999999999988777777899999999999999997777777899999999999
Q ss_pred eeCCCCCCcchHHHhccCCCcEEccccccc
Q 017788 93 LSGCSNLRRIPESIINLSKLELLHLKNCSK 122 (366)
Q Consensus 93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~ 122 (366)
|++|.+....+..+..+++|+.|++++|+.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 999987755555789999999999999864
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=1e-12 Score=131.64 Aligned_cols=106 Identities=18% Similarity=0.123 Sum_probs=78.9
Q ss_pred CCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeC
Q 017788 16 NLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSG 95 (366)
Q Consensus 16 ~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~ 95 (366)
.|++|+|++|.+.+ +|.++.+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+| .++.+++|++|+|++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCC
Confidence 47778888887743 666777888888888887544 77778888888888888887744 466 677888888888888
Q ss_pred CCCCCcc-hHHHhccCCCcEEcccccccccc
Q 017788 96 CSNLRRI-PESIINLSKLELLHLKNCSKLLS 125 (366)
Q Consensus 96 n~~~~~l-p~~i~~L~~L~~L~L~~n~~l~~ 125 (366)
|.+.+.. |..++.+++|+.|+|++|++.+.
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 8766654 77788888888888888755433
No 122
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.38 E-value=3.8e-13 Score=126.69 Aligned_cols=170 Identities=16% Similarity=0.140 Sum_probs=120.8
Q ss_pred CEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccC-ccccCCcCCcEEecccccccCccch-hcCCCCCCcE-EEe
Q 017788 18 KEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETH-SSIQYLSKLVTLDMRLCKNLNRLPS-SLCELISLQR-LYL 93 (366)
Q Consensus 18 ~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p-~~i~~L~~L~~L~L~~n~~~~~lp~-~i~~l~~L~~-L~L 93 (366)
++++.+++++ +.+|. + .+++++|+|++|.+. .+| .+|+++++|++|+|++|++.+.+|. .|.++++|+. +.+
T Consensus 12 ~~v~C~~~~L-t~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKV-TEIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTC-CSCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCC-CccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 6788888887 46674 6 368999999999655 555 5789999999999999998887875 5678988876 555
Q ss_pred eCCCCCCcchHHHhccCCCcEEcccccccccccCCCC----CCccEEecCC--------------C-cCCccccCccccc
Q 017788 94 SGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELP----CNLFSVGVRR--------------C-TSLEALSSFSFLF 154 (366)
Q Consensus 94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~----~~L~~L~l~~--------------~-~~L~~L~l~~n~l 154 (366)
++|.+....|..+..+++|++|++++|++ ..+|... ..+..+++.+ + ..++.|+++.|.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 66766655677889999999999999965 4444321 1233333321 2 3467788888888
Q ss_pred ccCCCCCCceEEeCCcccCCh-hhhhcchHHHHHHHHhhh
Q 017788 155 SAMSPHNDQYFNLSDCLKLDQ-NELKGIAEDALQKIQQKA 193 (366)
Q Consensus 155 ~~~~~~~~~~l~~l~~l~L~~-n~l~~~~~~~~~~l~~L~ 193 (366)
+.+.+..+. ...+..+++.+ |.++.+.+++|..+++|+
T Consensus 167 ~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~ 205 (350)
T 4ay9_X 167 QEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPV 205 (350)
T ss_dssp CEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCS
T ss_pred cCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccc
Confidence 874444444 34566677764 667766666776666665
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.36 E-value=4.4e-14 Score=133.74 Aligned_cols=112 Identities=11% Similarity=0.084 Sum_probs=77.3
Q ss_pred CCCCCCCEEeccCCCCCCCCC----C-CCCCC-CCcEEecccCCCccccCccccCC-----cCCcEEecccccccCccch
Q 017788 12 KNLVNLKEIDLSYSRQLKKLP----D-LSQAR-NLENLLLKACSSLVETHSSIQYL-----SKLVTLDMRLCKNLNRLPS 80 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~~~~p----~-l~~l~-~L~~L~L~~n~~~~~~p~~i~~L-----~~L~~L~L~~n~~~~~lp~ 80 (366)
...++|++|+|++|.+....+ . +.+++ +|++|+|++|.+....+..+..+ ++|++|+|++|.+....+.
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 345568888888888755443 3 66777 78888888886665555555554 7888888888886555554
Q ss_pred hc----CCC-CCCcEEEeeCCCCCCcchHHHhc-----cCCCcEEcccccccc
Q 017788 81 SL----CEL-ISLQRLYLSGCSNLRRIPESIIN-----LSKLELLHLKNCSKL 123 (366)
Q Consensus 81 ~i----~~l-~~L~~L~Ls~n~~~~~lp~~i~~-----L~~L~~L~L~~n~~l 123 (366)
.+ ..+ ++|++|+|++|.+....+..+.. .++|++|++++|.+.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 33 334 78888888888776655555443 258888888888654
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=2.3e-12 Score=109.10 Aligned_cols=104 Identities=21% Similarity=0.199 Sum_probs=89.3
Q ss_pred CCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCcc-ccCCcCCcEEecccccccCccch--hcCCCCCCcEE
Q 017788 15 VNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSS-IQYLSKLVTLDMRLCKNLNRLPS--SLCELISLQRL 91 (366)
Q Consensus 15 ~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~-i~~L~~L~~L~L~~n~~~~~lp~--~i~~l~~L~~L 91 (366)
++|++|+|++|.+.+ ++.+..+++|++|++++|.+. .+|+. ++.+++|++|++++|. ++.+|. .+..+++|++|
T Consensus 42 ~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp TCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEE
T ss_pred CCCCEEECCCCCCCc-ccccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEE
Confidence 399999999999865 477999999999999999665 45544 5899999999999998 477887 78899999999
Q ss_pred EeeCCCCCCcchHH----HhccCCCcEEccccccc
Q 017788 92 YLSGCSNLRRIPES----IINLSKLELLHLKNCSK 122 (366)
Q Consensus 92 ~Ls~n~~~~~lp~~----i~~L~~L~~L~L~~n~~ 122 (366)
++++|.+. .+|.. +..+++|+.|++++|..
T Consensus 119 ~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 119 CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999765 56664 89999999999999864
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=6.3e-15 Score=127.56 Aligned_cols=135 Identities=15% Similarity=0.105 Sum_probs=99.8
Q ss_pred CCCCCCEEeccCCCCCCCCC-------CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCC
Q 017788 13 NLVNLKEIDLSYSRQLKKLP-------DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCEL 85 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p-------~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l 85 (366)
....++.++++.+.+.+..| .+..+++|++|++++|.+. .+| .+..+++|++|++++|. +..+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNL-IKKIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCC-cccccchhhcC
Confidence 34556666666666655555 3678889999999998554 477 88889999999999988 45788877778
Q ss_pred CCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCC
Q 017788 86 ISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSP 159 (366)
Q Consensus 86 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~ 159 (366)
++|++|++++|.+.+ +| .+..+++|+.|++++|.+. .+|... .+..+++|+.|+++.|.+.+..|
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~-~~~~~~------~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT-NWGEID------KLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC-CHHHHH------HHTTTTTCSEEEECSCHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC-chhHHH------HHhcCCCCCEEEecCCccccccc
Confidence 899999999987654 66 6888999999999998543 332100 45677888888888888766443
No 126
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=7.2e-12 Score=105.60 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=75.5
Q ss_pred CCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeC
Q 017788 17 LKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSG 95 (366)
Q Consensus 17 L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~ 95 (366)
.+++++++|.+ ..+|. + .++|++|+|++|.+.+..|..++.+++|++|+|++|++.+..|..+..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l-~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSL-ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCc-CccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 56788888877 44554 4 37788888888876666677788888888888888875544444567888888888888
Q ss_pred CCCCCcchHHHhccCCCcEEccccccc
Q 017788 96 CSNLRRIPESIINLSKLELLHLKNCSK 122 (366)
Q Consensus 96 n~~~~~lp~~i~~L~~L~~L~L~~n~~ 122 (366)
|.+.+..+..+.++++|+.|+|++|++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 876655555677888888888888754
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=4.1e-12 Score=127.29 Aligned_cols=159 Identities=19% Similarity=0.147 Sum_probs=107.1
Q ss_pred cCCCCCCCEEeccCCC-------------CCCCCCC-CCCCCCCcEEe-cccCCCccccCc------cccC--CcCCcEE
Q 017788 11 LKNLVNLKEIDLSYSR-------------QLKKLPD-LSQARNLENLL-LKACSSLVETHS------SIQY--LSKLVTL 67 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~-------------~~~~~p~-l~~l~~L~~L~-L~~n~~~~~~p~------~i~~--L~~L~~L 67 (366)
++++++|+.|++++|. ..+..|. ++.+++|+.|+ ++.|. ...++. .+.. ...|+.|
T Consensus 368 i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~L~~l~l~~n~i~~l~~~~L~~L 446 (567)
T 1dce_A 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDDLRSKFLLENSVLKMEYADVRVL 446 (567)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cchhhhhhhhcccccccCccCceEE
Confidence 3456667777775553 3344444 66777777777 44431 111111 1111 1257888
Q ss_pred ecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccc
Q 017788 68 DMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEAL 147 (366)
Q Consensus 68 ~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L 147 (366)
+|++|. +..+|. ++.+++|+.|+|++|.+. .+|..++++++|+.|+|++|.+. .+| .+.++++|+.|
T Consensus 447 ~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp---------~l~~l~~L~~L 513 (567)
T 1dce_A 447 HLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD---------GVANLPRLQEL 513 (567)
T ss_dssp ECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG---------GGTTCSSCCEE
T ss_pred EecCCC-CCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc---------ccCCCCCCcEE
Confidence 888887 444676 778888888888888665 77888888888888888887543 354 46677888888
Q ss_pred cCcccccccCC-CCCCceEEeCCcccCChhhhhcchH
Q 017788 148 SSFSFLFSAMS-PHNDQYFNLSDCLKLDQNELKGIAE 183 (366)
Q Consensus 148 ~l~~n~l~~~~-~~~~~~l~~l~~l~L~~n~l~~~~~ 183 (366)
+++.|.+++.. |..++.+..|+.|+|++|++++.++
T Consensus 514 ~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred ECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 88888888755 7778888888888888888877644
No 128
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.29 E-value=5.5e-14 Score=136.85 Aligned_cols=181 Identities=18% Similarity=0.130 Sum_probs=120.4
Q ss_pred CCCCCCEEeccCCCCCCCCCC-CC-----CCCCCcEEecccCCCccc----cCccccCCcCCcEEecccccccCc----c
Q 017788 13 NLVNLKEIDLSYSRQLKKLPD-LS-----QARNLENLLLKACSSLVE----THSSIQYLSKLVTLDMRLCKNLNR----L 78 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~-l~-----~l~~L~~L~L~~n~~~~~----~p~~i~~L~~L~~L~L~~n~~~~~----l 78 (366)
.+++|++|++++|.+....+. +. ..++|++|++++|.+... ++..+..+++|++|++++|.+... +
T Consensus 168 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 247 (461)
T 1z7x_W 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 247 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH
Confidence 358999999999986433221 22 356899999999866543 567778889999999999875432 2
Q ss_pred -chhcCCCCCCcEEEeeCCCCCCc----chHHHhccCCCcEEcccccccccc--------cCCCCCCccEEecCCC----
Q 017788 79 -PSSLCELISLQRLYLSGCSNLRR----IPESIINLSKLELLHLKNCSKLLS--------LPELPCNLFSVGVRRC---- 141 (366)
Q Consensus 79 -p~~i~~l~~L~~L~Ls~n~~~~~----lp~~i~~L~~L~~L~L~~n~~l~~--------lp~l~~~L~~L~l~~~---- 141 (366)
+..+..+++|++|++++|.+... ++..+.++++|++|++++|.+... +....++|+.|++++|
T Consensus 248 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence 22333688999999999876543 677888889999999998865322 1112246777776553
Q ss_pred -------------cCCccccCcccccccCCCCCCce-----EEeCCcccCChhhhhc----chHHHHHHHHhhh
Q 017788 142 -------------TSLEALSSFSFLFSAMSPHNDQY-----FNLSDCLKLDQNELKG----IAEDALQKIQQKA 193 (366)
Q Consensus 142 -------------~~L~~L~l~~n~l~~~~~~~~~~-----l~~l~~l~L~~n~l~~----~~~~~~~~l~~L~ 193 (366)
++|+.|+++.|.++...+..+.. ...++.+++++|.+++ .++..+.+++.|+
T Consensus 328 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp GGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 67777888777765432222211 3467777788777765 4555555555543
No 129
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=1.4e-11 Score=104.26 Aligned_cols=102 Identities=17% Similarity=0.073 Sum_probs=72.0
Q ss_pred CEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCC
Q 017788 18 KEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC 96 (366)
Q Consensus 18 ~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n 96 (366)
+.+++++|++ +.+|. +. ++|++|+|++|.+.+..|..++.+++|++|+|++|++.+..+..+..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 6778888776 55664 53 77888888888766666777788888888888888744433334567888888888887
Q ss_pred CCCCcchHHHhccCCCcEEccccccc
Q 017788 97 SNLRRIPESIINLSKLELLHLKNCSK 122 (366)
Q Consensus 97 ~~~~~lp~~i~~L~~L~~L~L~~n~~ 122 (366)
.+.+..+..+..+++|++|+|++|++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 66644444477778888888877743
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=4.4e-14 Score=122.19 Aligned_cols=133 Identities=23% Similarity=0.179 Sum_probs=103.3
Q ss_pred cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR 90 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 90 (366)
+.++++|++|+|++|.+.+ +|.+.++++|++|++++|.+ ..+|..+..+++|++|++++|.+ ..+| .+..+++|++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N~l-~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQI-ASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEEEC-CCHH-HHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCCcC-CcCC-ccccCCCCCE
Confidence 5678899999999999855 77888999999999999955 47888888889999999999985 4566 6889999999
Q ss_pred EEeeCCCCCCcch--HHHhccCCCcEEcccccccccccCCCC--CCccEEecCCCcCCcccc
Q 017788 91 LYLSGCSNLRRIP--ESIINLSKLELLHLKNCSKLLSLPELP--CNLFSVGVRRCTSLEALS 148 (366)
Q Consensus 91 L~Ls~n~~~~~lp--~~i~~L~~L~~L~L~~n~~l~~lp~l~--~~L~~L~l~~~~~L~~L~ 148 (366)
|++++|.+.. +| ..+..+++|++|++++|.+....|... .....-.+..+++|+.|+
T Consensus 120 L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 120 LYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999997664 44 478999999999999997766554300 000000145566676665
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=2.9e-13 Score=128.10 Aligned_cols=107 Identities=11% Similarity=0.075 Sum_probs=86.0
Q ss_pred EEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccC----ccccCCc-CCcEEecccccccCccchhcCCC-----CC
Q 017788 19 EIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETH----SSIQYLS-KLVTLDMRLCKNLNRLPSSLCEL-----IS 87 (366)
Q Consensus 19 ~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p----~~i~~L~-~L~~L~L~~n~~~~~lp~~i~~l-----~~ 87 (366)
.+++++|.+.+.+|. +...++|++|+|++|.+....+ ..+..++ +|++|+|++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 468899999888887 5555669999999997655444 6778888 99999999999777667666654 99
Q ss_pred CcEEEeeCCCCCCcchHHHhcc-----CCCcEEcccccccccc
Q 017788 88 LQRLYLSGCSNLRRIPESIINL-----SKLELLHLKNCSKLLS 125 (366)
Q Consensus 88 L~~L~Ls~n~~~~~lp~~i~~L-----~~L~~L~L~~n~~l~~ 125 (366)
|++|+|++|.+....+..+... ++|+.|++++|.+...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 9999999998877777755554 8999999999976443
No 132
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.26 E-value=9e-14 Score=135.35 Aligned_cols=43 Identities=16% Similarity=-0.099 Sum_probs=33.4
Q ss_pred CcCCccccCccccccc----CCCCCCceEEeCCcccCChhhhhcchH
Q 017788 141 CTSLEALSSFSFLFSA----MSPHNDQYFNLSDCLKLDQNELKGIAE 183 (366)
Q Consensus 141 ~~~L~~L~l~~n~l~~----~~~~~~~~l~~l~~l~L~~n~l~~~~~ 183 (366)
+++|+.|+++.|.++. .++..+..++.++.+++++|.+++...
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~ 415 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 415 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHH
Confidence 4588899999998874 466667778889999999998876433
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.21 E-value=4.1e-11 Score=100.93 Aligned_cols=106 Identities=17% Similarity=0.081 Sum_probs=72.8
Q ss_pred CcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccc
Q 017788 40 LENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN 119 (366)
Q Consensus 40 L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~ 119 (366)
.+.+++++| .+..+|..+. ++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..|..+.++++|++|+|++
T Consensus 11 ~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 567888876 3455676553 7788888888886666677777888888888888876655555567788888888888
Q ss_pred cccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788 120 CSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA 156 (366)
Q Consensus 120 n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~ 156 (366)
|++. .+|.. .+.++++|+.|+++.|.+..
T Consensus 88 N~l~-~~~~~-------~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLK-SIPRG-------AFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCC-CCCTT-------TTTTCTTCCEEECCSSCBCT
T ss_pred CccC-EeCHH-------HhcCCCCCCEEEeCCCCCCC
Confidence 7543 33330 35566777777777666543
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.17 E-value=7.4e-11 Score=99.80 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=71.6
Q ss_pred CcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccc
Q 017788 40 LENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN 119 (366)
Q Consensus 40 L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~ 119 (366)
-+.+++++| .++.+|..+. ++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..+..+.++++|+.|+|++
T Consensus 14 ~~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367778776 3466776554 7788888888886666677777888888888888766654444457778888888887
Q ss_pred cccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788 120 CSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA 156 (366)
Q Consensus 120 n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~ 156 (366)
|.+ +.+|.. .+.++++|+.|+++.|.+..
T Consensus 91 N~l-~~l~~~-------~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHL-KSIPRG-------AFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCC-CCCCTT-------TTTTCTTCSEEECCSSCBCT
T ss_pred Ccc-ceeCHH-------HhccccCCCEEEeCCCCccc
Confidence 754 344431 25566677777777666543
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.11 E-value=8.8e-12 Score=116.28 Aligned_cols=169 Identities=15% Similarity=0.173 Sum_probs=96.7
Q ss_pred CCCCCEEeccCCCCCC-------------------CCCC--CCC--------CCCCcEEecccCCCccccCccccCCcCC
Q 017788 14 LVNLKEIDLSYSRQLK-------------------KLPD--LSQ--------ARNLENLLLKACSSLVETHSSIQYLSKL 64 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~-------------------~~p~--l~~--------l~~L~~L~L~~n~~~~~~p~~i~~L~~L 64 (366)
+++|++|||++|++.. .+|+ |.+ +++|+.|+|.+ .+...-+.+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 7789999999888750 2342 677 88999999987 4544445678889999
Q ss_pred cEEecccccccCccchhcCCCCCCcEEEeeCC-----------------CC---------CCcchHHH------------
Q 017788 65 VTLDMRLCKNLNRLPSSLCELISLQRLYLSGC-----------------SN---------LRRIPESI------------ 106 (366)
Q Consensus 65 ~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n-----------------~~---------~~~lp~~i------------ 106 (366)
+.|++.+|.+...-+..|..+.++..+.+... .. .+.++..+
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 99999888754333334444444444333220 00 00111110
Q ss_pred ----------------hccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC-
Q 017788 107 ----------------INLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD- 169 (366)
Q Consensus 107 ----------------~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~- 169 (366)
..+++|+.|++++|. +..+|.. .+.+|++|+.+.++.| +..+.+..|..+..|+
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~-------aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDF-------TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTT-------TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHh-------hhhCCCCCCEEECCcc-cceehHHHhhCChhccE
Confidence 125667777776653 3444432 3556666666666555 4444455556666565
Q ss_pred cccCChhhhhcchHHHHHHHHhhh
Q 017788 170 CLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 170 ~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
.+++.. .++.+.+.+|.+|++|+
T Consensus 278 ~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 278 TLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp EEEECT-TCCEECTTTTTTCTTEE
T ss_pred EEEEcc-cceEEchhhhhCCccCC
Confidence 566654 45555555665555554
No 136
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.06 E-value=3.3e-12 Score=128.25 Aligned_cols=110 Identities=21% Similarity=0.144 Sum_probs=62.1
Q ss_pred CCCCCCEEeccCCCCCCCCCC-CCC-C-CCCcEEecccCCCcc--ccCccccCCcCCcEEecccccccCc----cchhcC
Q 017788 13 NLVNLKEIDLSYSRQLKKLPD-LSQ-A-RNLENLLLKACSSLV--ETHSSIQYLSKLVTLDMRLCKNLNR----LPSSLC 83 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~-l~~-l-~~L~~L~L~~n~~~~--~~p~~i~~L~~L~~L~L~~n~~~~~----lp~~i~ 83 (366)
++++|++|+|++|.+....+. +.. + .+|++|+|++|.... .++..+..+++|++|+|++|.+.+. ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 467777777777765433322 333 2 237777777664211 1222234567777777777765433 333344
Q ss_pred CCCCCcEEEeeCCCCC----CcchHHHhccCCCcEEccccccc
Q 017788 84 ELISLQRLYLSGCSNL----RRIPESIINLSKLELLHLKNCSK 122 (366)
Q Consensus 84 ~l~~L~~L~Ls~n~~~----~~lp~~i~~L~~L~~L~L~~n~~ 122 (366)
.+++|++|++++|... ..++..+.++++|+.|++++|..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 5666777777666554 23444555666777777766643
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=3.8e-10 Score=105.73 Aligned_cols=102 Identities=20% Similarity=0.085 Sum_probs=74.5
Q ss_pred EEeccCC-CCCCCCCCCCCCCCCcEEeccc-CCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCC
Q 017788 19 EIDLSYS-RQLKKLPDLSQARNLENLLLKA-CSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC 96 (366)
Q Consensus 19 ~L~Ls~n-~~~~~~p~l~~l~~L~~L~L~~-n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n 96 (366)
.++++++ ++ ..+|.+..+++|+.|+|++ |.+.+..+..+++|++|+.|+|++|.+.+..|..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l-~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCC-CccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4677776 55 4466688888888888886 7555555567888888888888888866666667788888888888888
Q ss_pred CCCCcchHHHhccCCCcEEccccccc
Q 017788 97 SNLRRIPESIINLSKLELLHLKNCSK 122 (366)
Q Consensus 97 ~~~~~lp~~i~~L~~L~~L~L~~n~~ 122 (366)
.+.+..+..+..++ |+.|+|.+|++
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCc
Confidence 76643334444444 88888888754
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.97 E-value=9.2e-10 Score=103.08 Aligned_cols=106 Identities=17% Similarity=0.034 Sum_probs=80.0
Q ss_pred cEEecccCCCccccCccccCCcCCcEEeccc-ccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccc
Q 017788 41 ENLLLKACSSLVETHSSIQYLSKLVTLDMRL-CKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN 119 (366)
Q Consensus 41 ~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~-n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~ 119 (366)
..++++++..+..+|. +..+++|+.|+|++ |.+.+..|..|.++++|+.|+|++|.+.+..|..|.+|++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3467777635667888 99999999999996 775555557788999999999999988887788899999999999999
Q ss_pred cccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788 120 CSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA 156 (366)
Q Consensus 120 n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~ 156 (366)
|++ ..+|.. .+..++ |+.|++..|.+..
T Consensus 90 N~l-~~~~~~-------~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NAL-ESLSWK-------TVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCC-SCCCST-------TTCSCC-CCEEECCSSCCCC
T ss_pred Ccc-ceeCHH-------HcccCC-ceEEEeeCCCccC
Confidence 855 455541 122222 7777777776543
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.97 E-value=2.4e-11 Score=121.94 Aligned_cols=111 Identities=18% Similarity=0.162 Sum_probs=69.5
Q ss_pred CCCCCCEEeccCCCCCCCCCC-CC-CCCCCcEEecccCCCccc--cCccccCCcCCcEEecccccccCccc----hhcCC
Q 017788 13 NLVNLKEIDLSYSRQLKKLPD-LS-QARNLENLLLKACSSLVE--THSSIQYLSKLVTLDMRLCKNLNRLP----SSLCE 84 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~~p~-l~-~l~~L~~L~L~~n~~~~~--~p~~i~~L~~L~~L~L~~n~~~~~lp----~~i~~ 84 (366)
.+++|++|+|++|.+....+. +. .+++|++|+|++|...+. ++..+..+++|++|+|++|.+....+ .....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 356788888888876544333 43 577888888888744433 44445578888888888887544332 22336
Q ss_pred CCCCcEEEeeCCC--CC-CcchHHHhccCCCcEEcccccccc
Q 017788 85 LISLQRLYLSGCS--NL-RRIPESIINLSKLELLHLKNCSKL 123 (366)
Q Consensus 85 l~~L~~L~Ls~n~--~~-~~lp~~i~~L~~L~~L~L~~n~~l 123 (366)
+++|++|++++|. +. ..++..+.++++|+.|++++|...
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 6788888888775 11 112223345688888888877433
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.92 E-value=1.3e-11 Score=117.27 Aligned_cols=165 Identities=16% Similarity=0.104 Sum_probs=101.6
Q ss_pred CCCCCEEeccCCCCCCCCC----C-CC-CCCCCcEEecccCCCccccCcc-ccCCcCCcEEecccccccCccchhc----
Q 017788 14 LVNLKEIDLSYSRQLKKLP----D-LS-QARNLENLLLKACSSLVETHSS-IQYLSKLVTLDMRLCKNLNRLPSSL---- 82 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p----~-l~-~l~~L~~L~L~~n~~~~~~p~~-i~~L~~L~~L~L~~n~~~~~lp~~i---- 82 (366)
+++|++|+|++|.+..... . +. ..++|+.|+|++|.+...-... ...+++|+.|+|++|.+...-...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4578888998888743221 1 22 3368889999888654332222 2346688889998887543322222
Q ss_pred -CCCCCCcEEEeeCCCCCC----cchHHHhccCCCcEEcccccccccc----cCCCCCCccEEecCCCcCCccccCcccc
Q 017788 83 -CELISLQRLYLSGCSNLR----RIPESIINLSKLELLHLKNCSKLLS----LPELPCNLFSVGVRRCTSLEALSSFSFL 153 (366)
Q Consensus 83 -~~l~~L~~L~Ls~n~~~~----~lp~~i~~L~~L~~L~L~~n~~l~~----lp~l~~~L~~L~l~~~~~L~~L~l~~n~ 153 (366)
...++|++|+|++|.+.. .++..+..+++|++|+|++|.+... ++. .+..+++|+.|+++.|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~--------~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA--------QLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH--------HGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH--------HHhcCCCcCeEECCCCC
Confidence 246788889998886543 2455567788888999888864321 122 23455677777777776
Q ss_pred cccC----CCCCCceEEeCCcccCChhhhhcchHHHH
Q 017788 154 FSAM----SPHNDQYFNLSDCLKLDQNELKGIAEDAL 186 (366)
Q Consensus 154 l~~~----~~~~~~~l~~l~~l~L~~n~l~~~~~~~~ 186 (366)
++.. +...+.....++.++|++|.+.......+
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 6531 11222334567778888887765444444
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.91 E-value=5.4e-11 Score=119.33 Aligned_cols=102 Identities=17% Similarity=0.157 Sum_probs=67.7
Q ss_pred CCEEeccCCCCCC--CCCC-CCCCCCCcEEecccCCCccc----cCccccCCcCCcEEeccccccc----CccchhcCCC
Q 017788 17 LKEIDLSYSRQLK--KLPD-LSQARNLENLLLKACSSLVE----THSSIQYLSKLVTLDMRLCKNL----NRLPSSLCEL 85 (366)
Q Consensus 17 L~~L~Ls~n~~~~--~~p~-l~~l~~L~~L~L~~n~~~~~----~p~~i~~L~~L~~L~L~~n~~~----~~lp~~i~~l 85 (366)
|++|+|++|.... .++. ..++++|++|+|++|..... ++.....+++|++|++++|.+. ..++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 8888888775211 1122 23677888888888754333 3334556778888888877754 3455556677
Q ss_pred CCCcEEEeeCCCCCCcchHHHhccCCCcEEcccc
Q 017788 86 ISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN 119 (366)
Q Consensus 86 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~ 119 (366)
++|++|++++|.+. .+|..+.++++|+.|+++.
T Consensus 220 ~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 220 RSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp TTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECB
T ss_pred CCCcEEeccCccHH-HHHHHHhhhhHHHhhcccc
Confidence 88888888887544 4777777788888888765
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=6.5e-09 Score=96.70 Aligned_cols=168 Identities=11% Similarity=0.057 Sum_probs=120.6
Q ss_pred CCCCCEEeccCCCCCCCCC-C-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccc-----------------
Q 017788 14 LVNLKEIDLSYSRQLKKLP-D-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKN----------------- 74 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p-~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~----------------- 74 (366)
+++|+.|+|.. .+ ..++ . |.++++|+.|++.+|.....-+.+|.++.++..+.+.....
T Consensus 100 ~~~L~~l~L~~-~i-~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KI-KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TC-CEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cc-cchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 89999999988 55 4455 3 99999999999998876655566677777777666544110
Q ss_pred c---------Cccchhc----------------------------CCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcc
Q 017788 75 L---------NRLPSSL----------------------------CELISLQRLYLSGCSNLRRIPESIINLSKLELLHL 117 (366)
Q Consensus 75 ~---------~~lp~~i----------------------------~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L 117 (366)
+ +.++..+ ..+++|+.|+|++|.+...-+..|.++++|+.|++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 0 0111100 02678999999988765444456888999999999
Q ss_pred cccccccccCCCCCCccEEecCCCcCCc-cccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788 118 KNCSKLLSLPELPCNLFSVGVRRCTSLE-ALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA 193 (366)
Q Consensus 118 ~~n~~l~~lp~l~~~L~~L~l~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~ 193 (366)
.+| +..++.. .+.+|++|+ .+.+.. .++.+.+..|.++..|+.++++.|.++.+.+.+|.++++|+
T Consensus 258 ~~n--i~~I~~~-------aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 258 PHN--LKTIGQR-------VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp CTT--CCEECTT-------TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred Ccc--cceehHH-------HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 886 5556642 578888888 888877 66665677888888888888888888888888887777764
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.76 E-value=2.1e-10 Score=114.98 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=69.2
Q ss_pred CCCCCCEEeccCCCCCCC--CCC-CCCCCCCcEEecccCCCcccc----CccccCCcCCcEEeccccc--cc-Cccchhc
Q 017788 13 NLVNLKEIDLSYSRQLKK--LPD-LSQARNLENLLLKACSSLVET----HSSIQYLSKLVTLDMRLCK--NL-NRLPSSL 82 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~~~--~p~-l~~l~~L~~L~L~~n~~~~~~----p~~i~~L~~L~~L~L~~n~--~~-~~lp~~i 82 (366)
.+++|++|+|++|...+. ++. +.++++|++|++++|.+.... +.....+++|+.|++++|. +. ..++..+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 477888888888843232 334 346788888888888643322 2223366788888888775 11 1222333
Q ss_pred CCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEccccc
Q 017788 83 CELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC 120 (366)
Q Consensus 83 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n 120 (366)
..+++|++|++++|.....+|..+.++++|+.|++..+
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 45688888888887555557777777788888875544
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.72 E-value=5e-10 Score=106.32 Aligned_cols=135 Identities=18% Similarity=0.053 Sum_probs=97.1
Q ss_pred CCCCCEEeccCCCCCCCCC-CC-CCCCCCcEEecccCCCccccCccc-----cCCcCCcEEecccccccC----ccchhc
Q 017788 14 LVNLKEIDLSYSRQLKKLP-DL-SQARNLENLLLKACSSLVETHSSI-----QYLSKLVTLDMRLCKNLN----RLPSSL 82 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p-~l-~~l~~L~~L~L~~n~~~~~~p~~i-----~~L~~L~~L~L~~n~~~~----~lp~~i 82 (366)
.++|++|+|++|.+..... .+ ..+++|+.|+|++|.+...-...+ ...++|++|+|++|.+.. .++..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 3689999999998743322 22 346789999999996654333333 246889999999998543 355666
Q ss_pred CCCCCCcEEEeeCCCCCC----cchHHHhccCCCcEEcccccccccc----cCCCCCCccEEecCCCcCCccccCccccc
Q 017788 83 CELISLQRLYLSGCSNLR----RIPESIINLSKLELLHLKNCSKLLS----LPELPCNLFSVGVRRCTSLEALSSFSFLF 154 (366)
Q Consensus 83 ~~l~~L~~L~Ls~n~~~~----~lp~~i~~L~~L~~L~L~~n~~l~~----lp~l~~~L~~L~l~~~~~L~~L~l~~n~l 154 (366)
..+++|++|+|++|.+.. .++..+...++|+.|+|++|.+... ++. .+..+++|+.|+++.|.+
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~--------~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR--------AAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH--------HHHHCSSCCEEECTTSSC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH--------HHHhCCCCCEEeccCCCC
Confidence 788999999999997653 2456677888999999999965432 222 234567888888888877
Q ss_pred cc
Q 017788 155 SA 156 (366)
Q Consensus 155 ~~ 156 (366)
+.
T Consensus 252 ~~ 253 (372)
T 3un9_A 252 SS 253 (372)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.55 E-value=1.2e-07 Score=90.62 Aligned_cols=37 Identities=8% Similarity=-0.066 Sum_probs=18.6
Q ss_pred ecCCCcCCccccCcccccccCCCCCCceEEeCCcccCC
Q 017788 137 GVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLD 174 (366)
Q Consensus 137 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~ 174 (366)
.+.+|++|+.+.+. +.+..+....|.++..|+.+.+.
T Consensus 295 aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 295 CLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp TTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEEC
T ss_pred HhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEEC
Confidence 34555555555555 22444344455555555555553
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.47 E-value=1.7e-08 Score=95.23 Aligned_cols=161 Identities=12% Similarity=0.051 Sum_probs=91.6
Q ss_pred CCCCCCEEeccCCCCC---------CCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhc
Q 017788 13 NLVNLKEIDLSYSRQL---------KKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSL 82 (366)
Q Consensus 13 ~l~~L~~L~Ls~n~~~---------~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i 82 (366)
.+++|+.|.+...... +.++. +..+++|+.|.|++|... .++. +. +++|+.|+|..|.+.......+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHH
Confidence 4567777777544221 11222 456788888888877322 2333 33 7788888888776443332333
Q ss_pred C--CCCCCcEEEeeCCC--CCC-----cchHHH--hccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcc
Q 017788 83 C--ELISLQRLYLSGCS--NLR-----RIPESI--INLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFS 151 (366)
Q Consensus 83 ~--~l~~L~~L~Ls~n~--~~~-----~lp~~i--~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~ 151 (366)
. .+++|++|+|+.+. ..+ .+...+ ..+++|++|++.+|.+....+.... ....+++|+.|+++.
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la-----~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL-----ESDILPQLETMDISA 288 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH-----HCSSGGGCSEEECCS
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH-----hCccCCCCCEEECCC
Confidence 3 67888888886321 111 111112 2467888888887765432221000 112467788888888
Q ss_pred cccccC----CCCCCceEEeCCcccCChhhhhcc
Q 017788 152 FLFSAM----SPHNDQYFNLSDCLKLDQNELKGI 181 (366)
Q Consensus 152 n~l~~~----~~~~~~~l~~l~~l~L~~n~l~~~ 181 (366)
|.+... ++..+..+..|+.|+|+.|.++..
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 876542 233334567788888888876643
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.41 E-value=1.4e-07 Score=88.93 Aligned_cols=135 Identities=14% Similarity=0.092 Sum_probs=91.0
Q ss_pred CCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCcccc--CCcCCcEEecccc--cccC-----ccchhc
Q 017788 12 KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQ--YLSKLVTLDMRLC--KNLN-----RLPSSL 82 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~--~L~~L~~L~L~~n--~~~~-----~lp~~i 82 (366)
..+++|+.|+|++|... .++.+. +++|+.|++..|.+.......+. .+++|+.|+|+.+ ...+ .+...+
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred hcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 45689999999988422 344454 89999999998865443333343 7899999998632 1111 122223
Q ss_pred --CCCCCCcEEEeeCCCCCCcchHHHh---ccCCCcEEcccccccccc----cCCCCCCccEEecCCCcCCccccCcccc
Q 017788 83 --CELISLQRLYLSGCSNLRRIPESII---NLSKLELLHLKNCSKLLS----LPELPCNLFSVGVRRCTSLEALSSFSFL 153 (366)
Q Consensus 83 --~~l~~L~~L~Ls~n~~~~~lp~~i~---~L~~L~~L~L~~n~~l~~----lp~l~~~L~~L~l~~~~~L~~L~l~~n~ 153 (366)
..+++|++|+|++|.+....+..+. .+++|++|+|+.|.+... ++. .+.++++|+.|+++.|.
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~--------~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD--------HVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT--------THHHHTTCSEEECCSBB
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh--------hcccCCcceEEECCCCc
Confidence 2589999999999876654444454 478999999999865432 332 23456788889888886
Q ss_pred ccc
Q 017788 154 FSA 156 (366)
Q Consensus 154 l~~ 156 (366)
++.
T Consensus 319 i~d 321 (362)
T 2ra8_A 319 LSD 321 (362)
T ss_dssp CCH
T ss_pred CCH
Confidence 643
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=2.6e-07 Score=78.60 Aligned_cols=87 Identities=15% Similarity=0.078 Sum_probs=38.6
Q ss_pred CCCCCCCEEeccCC-CCCCC----CCC-CCCCCCCcEEecccCCCccc----cCccccCCcCCcEEecccccccCc----
Q 017788 12 KNLVNLKEIDLSYS-RQLKK----LPD-LSQARNLENLLLKACSSLVE----THSSIQYLSKLVTLDMRLCKNLNR---- 77 (366)
Q Consensus 12 ~~l~~L~~L~Ls~n-~~~~~----~p~-l~~l~~L~~L~L~~n~~~~~----~p~~i~~L~~L~~L~L~~n~~~~~---- 77 (366)
...++|++|+|++| .+... +.. +...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 44555666666655 44211 111 33445555555555543221 222333344555555555553221
Q ss_pred cchhcCCCCCCcEEEe--eCCCC
Q 017788 78 LPSSLCELISLQRLYL--SGCSN 98 (366)
Q Consensus 78 lp~~i~~l~~L~~L~L--s~n~~ 98 (366)
+...+...++|++|+| ++|.+
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCC
T ss_pred HHHHHHhCCCceEEEecCCCCCC
Confidence 2333444445555555 44443
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=1.3e-06 Score=73.22 Aligned_cols=87 Identities=11% Similarity=0.190 Sum_probs=53.3
Q ss_pred CCCcEEecccCCCccccCccccCCcCCcEEecccccccCc-cchhcCCC----CCCcEEEeeCCCC-CCcchHHHhccCC
Q 017788 38 RNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNR-LPSSLCEL----ISLQRLYLSGCSN-LRRIPESIINLSK 111 (366)
Q Consensus 38 ~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~-lp~~i~~l----~~L~~L~Ls~n~~-~~~lp~~i~~L~~ 111 (366)
..|+.|++++|.+...--..+..+++|+.|+|++|..++. --..+..+ ++|++|+|++|.. +..--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4578888888764433334566777888888888764432 11233343 3688888888753 3222244566777
Q ss_pred CcEEccccccccc
Q 017788 112 LELLHLKNCSKLL 124 (366)
Q Consensus 112 L~~L~L~~n~~l~ 124 (366)
|++|++++|..++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 8888777775443
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.17 E-value=4.7e-06 Score=79.58 Aligned_cols=149 Identities=9% Similarity=0.054 Sum_probs=87.7
Q ss_pred CCCCCEEeccCCCCCCCCCC--CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCcc-chhcCCCCCCcE
Q 017788 14 LVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRL-PSSLCELISLQR 90 (366)
Q Consensus 14 l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~l-p~~i~~l~~L~~ 90 (366)
+.+|+.+.|..+ + ..++. |.++++|+.+.+..+ ....-..+|.+ .+|+.+.+. +. +..+ +..|.++++|+.
T Consensus 202 ~~~L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~-i~~I~~~aF~~c~~L~~ 275 (401)
T 4fdw_A 202 YAGIEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG-VTNIASRAFYYCPELAE 275 (401)
T ss_dssp TCCCSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT-CCEECTTTTTTCTTCCE
T ss_pred ecccCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC-ccEEChhHhhCCCCCCE
Confidence 467888888754 3 44552 888888888888764 33223344555 678888884 33 3333 456677888888
Q ss_pred EEeeCCCCC-----CcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceE
Q 017788 91 LYLSGCSNL-----RRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYF 165 (366)
Q Consensus 91 L~Ls~n~~~-----~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 165 (366)
+++.++... ..-+..|.++++|+.+.+..+ +..++.. .+.+|++|+.+.+..+ ++.+....|..+
T Consensus 276 l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~-------aF~~c~~L~~l~lp~~-l~~I~~~aF~~~ 345 (401)
T 4fdw_A 276 VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQG-------LLGGNRKVTQLTIPAN-VTQINFSAFNNT 345 (401)
T ss_dssp EEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTT-------TTTTCCSCCEEEECTT-CCEECTTSSSSS
T ss_pred EEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhh-------hhcCCCCccEEEECcc-ccEEcHHhCCCC
Confidence 888776432 123456777778888877642 3444431 3455555555555333 333334445555
Q ss_pred EeCCcccCChhhhh
Q 017788 166 NLSDCLKLDQNELK 179 (366)
Q Consensus 166 ~~l~~l~L~~n~l~ 179 (366)
.|+.+.+..|.+.
T Consensus 346 -~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 346 -GIKEVKVEGTTPP 358 (401)
T ss_dssp -CCCEEEECCSSCC
T ss_pred -CCCEEEEcCCCCc
Confidence 5555555554443
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.17 E-value=2e-06 Score=77.30 Aligned_cols=66 Identities=21% Similarity=0.214 Sum_probs=34.6
Q ss_pred CCcCCcEEecccccccC--ccchhcCCCCCCcEEEeeCCCCCCcchHHHhccC--CCcEEcccccccccccC
Q 017788 60 YLSKLVTLDMRLCKNLN--RLPSSLCELISLQRLYLSGCSNLRRIPESIINLS--KLELLHLKNCSKLLSLP 127 (366)
Q Consensus 60 ~L~~L~~L~L~~n~~~~--~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~--~L~~L~L~~n~~l~~lp 127 (366)
++++|+.|+|++|++.+ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|+.|+|++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 45566666666665443 3344445566666666666654432 2233333 56666666665544443
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.11 E-value=1.4e-06 Score=78.30 Aligned_cols=100 Identities=20% Similarity=0.158 Sum_probs=71.4
Q ss_pred CCCCE--EeccCCCCCCCCCC-----CCCCCCCcEEecccCCCcc--ccCccccCCcCCcEEecccccccCccchhcCCC
Q 017788 15 VNLKE--IDLSYSRQLKKLPD-----LSQARNLENLLLKACSSLV--ETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCEL 85 (366)
Q Consensus 15 ~~L~~--L~Ls~n~~~~~~p~-----l~~l~~L~~L~L~~n~~~~--~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l 85 (366)
+.|+. ++++.|+. ..++. ..++++|+.|+|++|.+.+ .+|..++.+++|+.|+|++|.+.+. ..+..+
T Consensus 141 p~L~~~~l~l~~N~~-~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l 217 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRR-SCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKI 217 (267)
T ss_dssp HHHHHTTCCCCTTSH-HHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGG
T ss_pred cchhhcCccccCCHH-HHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhc
Confidence 34444 56666642 22221 2467899999999997765 5567778899999999999985543 233444
Q ss_pred C--CCcEEEeeCCCCCCcch-------HHHhccCCCcEEcc
Q 017788 86 I--SLQRLYLSGCSNLRRIP-------ESIINLSKLELLHL 117 (366)
Q Consensus 86 ~--~L~~L~Ls~n~~~~~lp-------~~i~~L~~L~~L~L 117 (366)
. +|++|+|++|.+.+.+| ..+..+++|+.||=
T Consensus 218 ~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 218 KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 4 99999999999877665 34778999999973
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.03 E-value=9.3e-07 Score=75.12 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=43.0
Q ss_pred CCCCCCcEEecccC-CCcc----ccCccccCCcCCcEEecccccccC----ccchhcCCCCCCcEEEeeCCCCCCc----
Q 017788 35 SQARNLENLLLKAC-SSLV----ETHSSIQYLSKLVTLDMRLCKNLN----RLPSSLCELISLQRLYLSGCSNLRR---- 101 (366)
Q Consensus 35 ~~l~~L~~L~L~~n-~~~~----~~p~~i~~L~~L~~L~L~~n~~~~----~lp~~i~~l~~L~~L~Ls~n~~~~~---- 101 (366)
...++|++|+|++| .+.. .+...+...++|++|+|++|.+.. .+...+...++|++|+|++|.+...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34556666666665 3322 123334445566666666665322 1233333445566666666654332
Q ss_pred chHHHhccCCCcEEcc--cccc
Q 017788 102 IPESIINLSKLELLHL--KNCS 121 (366)
Q Consensus 102 lp~~i~~L~~L~~L~L--~~n~ 121 (366)
+...+...++|++|+| ++|.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHhCCCceEEEecCCCCC
Confidence 2334444455666666 4443
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=3.8e-06 Score=70.45 Aligned_cols=87 Identities=16% Similarity=0.301 Sum_probs=64.5
Q ss_pred CCCCEEeccCCCCCCC-CCCCCCCCCCcEEecccCCCcccc-CccccCC----cCCcEEecccccccCc-cchhcCCCCC
Q 017788 15 VNLKEIDLSYSRQLKK-LPDLSQARNLENLLLKACSSLVET-HSSIQYL----SKLVTLDMRLCKNLNR-LPSSLCELIS 87 (366)
Q Consensus 15 ~~L~~L~Ls~n~~~~~-~p~l~~l~~L~~L~L~~n~~~~~~-p~~i~~L----~~L~~L~L~~n~~~~~-lp~~i~~l~~ 87 (366)
..|+.||+++|.++.. +..+.++++|+.|+|++|..++.. -..+..+ ++|++|+|++|..++. --..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3699999999986533 334789999999999999755432 1234544 4799999999975442 2234668999
Q ss_pred CcEEEeeCCCCCCc
Q 017788 88 LQRLYLSGCSNLRR 101 (366)
Q Consensus 88 L~~L~Ls~n~~~~~ 101 (366)
|++|+|++|.....
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 99999999976654
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.11 E-value=0.0016 Score=61.53 Aligned_cols=81 Identities=12% Similarity=0.216 Sum_probs=34.0
Q ss_pred CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccc-hhcCCCCCCcEEEeeCCCCCCcchHHHhccCCC
Q 017788 34 LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP-SSLCELISLQRLYLSGCSNLRRIPESIINLSKL 112 (366)
Q Consensus 34 l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp-~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L 112 (366)
|.++.+|+.+.+..+ ....-..++.++.+|+.+.+.. . +..++ ..|.++.+|+.++|..+ +...-...|.++.+|
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-R-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCCC-c-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 444555555555432 2222223444455555555532 1 22222 23444555555555432 221122344455555
Q ss_pred cEEccc
Q 017788 113 ELLHLK 118 (366)
Q Consensus 113 ~~L~L~ 118 (366)
+.+.+.
T Consensus 337 ~~i~ip 342 (394)
T 4gt6_A 337 ERIAIP 342 (394)
T ss_dssp CEEEEC
T ss_pred CEEEEC
Confidence 555543
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.08 E-value=0.0025 Score=59.75 Aligned_cols=105 Identities=14% Similarity=0.188 Sum_probs=52.5
Q ss_pred CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccc-hhcCCCCCCcEEEeeCCCCCCcchHHHhccCCC
Q 017788 34 LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP-SSLCELISLQRLYLSGCSNLRRIPESIINLSKL 112 (366)
Q Consensus 34 l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp-~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L 112 (366)
+.++..|+.+.+..+ ....-..++.++.+|+.+.+..+ +..++ ..|.++.+|+.+.+.++.+...-...|.++.+|
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 555556666665543 22222334555666666665432 23333 244566666666665543332233455666666
Q ss_pred cEEcccccccccccCCCCCCccEEecCCCcCCccccCc
Q 017788 113 ELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSF 150 (366)
Q Consensus 113 ~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~ 150 (366)
+.+.+..+ ++.+... .+.+|++|+.+.+.
T Consensus 313 ~~i~lp~~--l~~I~~~-------aF~~C~~L~~i~ip 341 (379)
T 4h09_A 313 SSVTLPTA--LKTIQVY-------AFKNCKALSTISYP 341 (379)
T ss_dssp CEEECCTT--CCEECTT-------TTTTCTTCCCCCCC
T ss_pred CEEEcCcc--ccEEHHH-------HhhCCCCCCEEEEC
Confidence 66665432 2333321 35566666666554
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.70 E-value=0.0022 Score=60.15 Aligned_cols=125 Identities=10% Similarity=0.041 Sum_probs=53.1
Q ss_pred CCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCcc-chhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcE
Q 017788 36 QARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRL-PSSLCELISLQRLYLSGCSNLRRIPESIINLSKLEL 114 (366)
Q Consensus 36 ~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~l-p~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~ 114 (366)
...+|+.+.+..+ ....-..++.++.+|+.+.+..+ +..+ ...+.++.+|+.+.+..+ ....-...|.++++|+.
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 3444444444332 22222233445555555555432 2222 223445555555555432 22111233455555665
Q ss_pred EcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccC
Q 017788 115 LHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKL 173 (366)
Q Consensus 115 L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L 173 (366)
+.+.++ .++.++.. .+.+|.+|+.+.+..+ ++.+-...|.++..|+.+.+
T Consensus 291 i~l~~~-~i~~I~~~-------aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 291 VVMDNS-AIETLEPR-------VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EEECCT-TCCEECTT-------TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred cccccc-ccceehhh-------hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 555443 22333321 3455666666555432 33323334444444444444
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.64 E-value=0.0065 Score=57.28 Aligned_cols=83 Identities=16% Similarity=0.046 Sum_probs=43.5
Q ss_pred hcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCC
Q 017788 81 SLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPH 160 (366)
Q Consensus 81 ~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~ 160 (366)
.+..+.+|+.+.+..+ ....-...|.++++|+.+++..+ ++.++.. .+.+|++|+.+.+..+ ++.+-..
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~-------aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKR-------SFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTT-------TTTTCTTCCEECCCTT-CCEECTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHH-------hccCCCCCCEEEECcc-ccEehHH
Confidence 3445666666666543 22222334566666666666432 3333321 4566777777766554 4443444
Q ss_pred CCceEEeCCcccCC
Q 017788 161 NDQYFNLSDCLKLD 174 (366)
Q Consensus 161 ~~~~l~~l~~l~L~ 174 (366)
.|.++..|+.+++.
T Consensus 361 aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 361 AFQGCINLKKVELP 374 (394)
T ss_dssp TBTTCTTCCEEEEE
T ss_pred HhhCCCCCCEEEEC
Confidence 55555555555554
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.59 E-value=0.0072 Score=57.00 Aligned_cols=125 Identities=10% Similarity=0.083 Sum_probs=79.6
Q ss_pred cCCCCCCCEEeccCCCCCCCCC--CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccc-hhcCCCCC
Q 017788 11 LKNLVNLKEIDLSYSRQLKKLP--DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP-SSLCELIS 87 (366)
Q Consensus 11 l~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp-~~i~~l~~ 87 (366)
+.++..|+.+.+..+.. .++ .|..+..|+.+...... .....+..+.+|+.+.+..+ +..++ ..|.++.+
T Consensus 249 f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~ 321 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTS 321 (394)
T ss_dssp TTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTT
T ss_pred ccccccceeEEcCCCcc--eeeccccccccccceeccCcee---eccccccccccccccccccc--cceechhhhcCCCC
Confidence 34455555555554432 222 25556666665554431 12235677888888888754 34443 46778999
Q ss_pred CcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccc
Q 017788 88 LQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSF 152 (366)
Q Consensus 88 L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n 152 (366)
|+.+++..+ +...-...|.++++|+.+.+..+ +..++.. .+.+|++|+.+.+..+
T Consensus 322 L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~-------aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 322 LVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGAN-------AFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTT-------TBTTCTTCCEEEEEGG
T ss_pred CCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHH-------HhhCCCCCCEEEECCC
Confidence 999999753 33333467889999999998765 4455442 6789999999987654
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.41 E-value=0.007 Score=57.09 Aligned_cols=109 Identities=9% Similarity=0.061 Sum_probs=55.9
Q ss_pred ccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccE
Q 017788 56 SSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFS 135 (366)
Q Consensus 56 ~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~ 135 (366)
.+|.++.+|+.+.+..+. ...-...+.++.+|+.+.+... ....-...|.++.+|+.+.+..+ ++.+...
T Consensus 259 ~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~------ 328 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG--ITQILDD------ 328 (394)
T ss_dssp TTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTT------
T ss_pred ceeeecccccEEeccccc-ceecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc--ccEehHh------
Confidence 345666667776665432 2222334556667777766532 22222234566667777666543 3333321
Q ss_pred EecCCCcCCccccCcccccccCCCCCCceEEeCCcccCChh
Q 017788 136 VGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQN 176 (366)
Q Consensus 136 L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n 176 (366)
.+.+|++|+.+.+..+ ++.+-...|.++..|+.+++..+
T Consensus 329 -aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 329 -AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp -TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred -HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 4556666666665433 33333344555555555555543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.43 E-value=0.015 Score=49.45 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=26.6
Q ss_pred CCCCCCEEeccCC-CCCCC----CC-CCCCCCCCcEEecccCCCccc----cCccccCCcCCcEEecccccc
Q 017788 13 NLVNLKEIDLSYS-RQLKK----LP-DLSQARNLENLLLKACSSLVE----THSSIQYLSKLVTLDMRLCKN 74 (366)
Q Consensus 13 ~l~~L~~L~Ls~n-~~~~~----~p-~l~~l~~L~~L~L~~n~~~~~----~p~~i~~L~~L~~L~L~~n~~ 74 (366)
+-+.|++|+|++| .+... +- .+..-+.|+.|+|++|.+... +.+.+..-+.|+.|+|++|.+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 3455666666553 33110 11 133344555555555543221 112222334455555555553
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.53 E-value=0.076 Score=41.69 Aligned_cols=37 Identities=16% Similarity=-0.023 Sum_probs=21.8
Q ss_pred CCcEEecccccccCccchhcCCCCCCcEEEeeCCCCC
Q 017788 63 KLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNL 99 (366)
Q Consensus 63 ~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~ 99 (366)
+|++|+|++|.+...-+..|..+++|+.|+|++|...
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4666666666633322334456677777777777543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.44 E-value=0.049 Score=42.82 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=40.4
Q ss_pred EEecccccccC--ccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEccccccc
Q 017788 66 TLDMRLCKNLN--RLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSK 122 (366)
Q Consensus 66 ~L~L~~n~~~~--~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~ 122 (366)
.++.+++. ++ .+|..+ -.+|++|+|++|.+...-+..|..+++|+.|+|++|..
T Consensus 12 ~v~Cs~~~-L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSC-CCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCC-CccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 56667666 44 777643 34799999999987755556678899999999998853
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.73 E-value=0.047 Score=46.27 Aligned_cols=63 Identities=8% Similarity=-0.013 Sum_probs=29.3
Q ss_pred CCCCcEEecccCCCccc-----cCccccCCcCCcEEecccccccC----ccchhcCCCCCCcEEEeeCCCCC
Q 017788 37 ARNLENLLLKACSSLVE-----THSSIQYLSKLVTLDMRLCKNLN----RLPSSLCELISLQRLYLSGCSNL 99 (366)
Q Consensus 37 l~~L~~L~L~~n~~~~~-----~p~~i~~L~~L~~L~L~~n~~~~----~lp~~i~~l~~L~~L~Ls~n~~~ 99 (366)
-+.|+.|+|++|..++. +-..+..-+.|+.|+|++|.+.. .+.+.+..-+.|++|+|+.|.+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34566666655312221 22333444556666666655321 22233333455666666655443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.21 E-value=1.8e+02 Score=20.82 Aligned_cols=37 Identities=5% Similarity=-0.047 Sum_probs=19.3
Q ss_pred CCCCCCCcEEecccCCCccccCccccCCcCCcEEeccc
Q 017788 34 LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRL 71 (366)
Q Consensus 34 l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~ 71 (366)
|.++.+|+.+.+-.+ ....-..+|.++.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 555666666665542 2222234555666666666553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.18 E-value=1.9e+02 Score=20.71 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=19.9
Q ss_pred eccCCCCCCCEEeccCCCCCCCCC--CCCCCCCCcEEeccc
Q 017788 9 LILKNLVNLKEIDLSYSRQLKKLP--DLSQARNLENLLLKA 47 (366)
Q Consensus 9 l~l~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~ 47 (366)
-.|.++.+|+.+.+-.+- ..+. .|.++.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~v--~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNI--GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTTS--SCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCch--heEcHHHHhccCCccEEEEcC
Confidence 335566666666665442 2333 266666666666654
Done!