Query 017789
Match_columns 366
No_of_seqs 285 out of 1855
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:27:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00195 DSPc Dual specifici 100.0 1.4E-31 2.9E-36 229.2 16.0 137 2-194 1-138 (138)
2 KOG1717 Dual specificity phosp 100.0 5E-32 1.1E-36 247.8 11.7 144 1-198 171-315 (343)
3 KOG1718 Dual specificity phosp 100.0 9.4E-31 2E-35 225.1 13.3 140 3-198 18-158 (198)
4 KOG1716 Dual specificity phosp 100.0 2.6E-29 5.5E-34 240.9 15.1 148 2-202 75-223 (285)
5 PF00782 DSPc: Dual specificit 100.0 1.5E-28 3.2E-33 208.8 13.1 131 9-193 1-132 (133)
6 cd00127 DSPc Dual specificity 100.0 4.8E-28 1E-32 206.7 15.4 137 2-192 2-139 (139)
7 PRK12361 hypothetical protein; 99.9 7.1E-24 1.5E-28 220.3 15.5 141 2-195 95-237 (547)
8 KOG1719 Dual specificity phosp 99.8 6E-20 1.3E-24 156.4 10.4 141 4-194 27-169 (183)
9 PTZ00242 protein tyrosine phos 99.8 3.1E-19 6.7E-24 158.1 13.7 93 100-194 60-157 (166)
10 PTZ00393 protein tyrosine phos 99.8 7E-19 1.5E-23 162.0 14.5 95 99-196 135-230 (241)
11 COG2453 CDC14 Predicted protei 99.6 1.9E-15 4.2E-20 135.6 11.2 96 99-197 70-167 (180)
12 KOG1720 Protein tyrosine phosp 99.6 1.7E-14 3.7E-19 129.2 13.4 94 99-193 113-206 (225)
13 PF05706 CDKN3: Cyclin-depende 99.4 1.5E-12 3.3E-17 113.8 8.4 106 17-168 61-168 (168)
14 PF03162 Y_phosphatase2: Tyros 99.3 1.8E-11 4E-16 108.2 8.7 137 4-193 9-148 (164)
15 TIGR01244 conserved hypothetic 99.3 6.5E-11 1.4E-15 101.4 11.9 127 3-179 3-129 (135)
16 KOG2836 Protein tyrosine phosp 99.2 2.5E-10 5.4E-15 95.7 12.1 89 101-192 62-153 (173)
17 smart00012 PTPc_DSPc Protein t 99.1 2.1E-09 4.6E-14 86.2 11.3 84 106-189 7-100 (105)
18 smart00404 PTPc_motif Protein 99.1 2.1E-09 4.6E-14 86.2 11.3 84 106-189 7-100 (105)
19 COG5350 Predicted protein tyro 99.0 4.3E-09 9.3E-14 90.1 10.3 71 116-186 75-146 (172)
20 PF04273 DUF442: Putative phos 99.0 1.8E-09 3.9E-14 89.2 7.4 102 3-153 3-104 (110)
21 cd00047 PTPc Protein tyrosine 98.8 5.8E-08 1.3E-12 90.0 11.2 91 99-189 127-226 (231)
22 PLN02727 NAD kinase 98.7 6.7E-08 1.5E-12 103.4 10.2 110 8-164 262-371 (986)
23 smart00194 PTPc Protein tyrosi 98.6 1.6E-07 3.5E-12 88.6 10.3 89 101-189 157-253 (258)
24 COG3453 Uncharacterized protei 98.6 8.8E-07 1.9E-11 73.1 10.8 120 3-174 4-125 (130)
25 PF13350 Y_phosphatase3: Tyros 98.4 2.1E-06 4.5E-11 75.7 10.0 35 135-170 125-159 (164)
26 PRK15375 pathogenicity island 98.2 6.2E-06 1.4E-10 83.7 10.6 94 101-194 422-528 (535)
27 KOG2283 Clathrin coat dissocia 98.2 6.7E-06 1.5E-10 83.0 8.9 90 105-195 76-174 (434)
28 PF00102 Y_phosphatase: Protei 98.1 1.7E-05 3.6E-10 72.8 9.6 67 123-189 157-230 (235)
29 PHA02742 protein tyrosine phos 98.0 3.2E-05 6.9E-10 75.1 10.8 51 135-185 230-285 (303)
30 PF04179 Init_tRNA_PT: Initiat 98.0 4.1E-05 8.8E-10 77.9 11.1 89 103-191 340-449 (451)
31 PHA02747 protein tyrosine phos 97.9 6E-05 1.3E-09 73.5 10.5 54 135-188 230-288 (312)
32 PF14566 PTPlike_phytase: Inos 97.9 1.8E-05 3.8E-10 69.0 6.0 61 97-158 88-148 (149)
33 KOG1572 Predicted protein tyro 97.9 5.7E-05 1.2E-09 69.6 9.1 117 4-174 62-187 (249)
34 PHA02740 protein tyrosine phos 97.9 9E-05 1.9E-09 71.8 10.7 51 135-185 222-277 (298)
35 PHA02746 protein tyrosine phos 97.9 8.7E-05 1.9E-09 72.7 10.7 53 135-187 248-305 (323)
36 PHA02738 hypothetical protein; 97.7 0.00024 5.3E-09 69.5 10.7 53 135-187 228-285 (320)
37 COG2365 Protein tyrosine/serin 97.6 0.00032 7E-09 66.2 9.4 58 134-191 136-193 (249)
38 KOG2386 mRNA capping enzyme, g 97.6 0.00023 4.9E-09 70.7 8.3 75 122-196 111-186 (393)
39 KOG0792 Protein tyrosine phosp 97.4 0.00071 1.5E-08 73.5 9.4 79 108-186 1035-1120(1144)
40 KOG0790 Protein tyrosine phosp 97.3 0.00043 9.4E-09 68.9 6.3 70 117-186 434-511 (600)
41 COG5599 PTP2 Protein tyrosine 97.1 0.001 2.3E-08 62.4 6.7 57 99-159 182-244 (302)
42 KOG0789 Protein tyrosine phosp 96.6 0.0076 1.7E-07 60.4 8.5 52 134-185 299-356 (415)
43 KOG0791 Protein tyrosine phosp 96.4 0.011 2.5E-07 57.8 7.8 56 134-189 287-347 (374)
44 PF14671 DSPn: Dual specificit 93.9 0.18 3.9E-06 43.5 6.5 66 110-176 39-112 (141)
45 PF03226 Yippee-Mis18: Yippee 93.2 0.059 1.3E-06 43.1 2.1 19 255-273 2-20 (96)
46 KOG0793 Protein tyrosine phosp 93.0 0.24 5.1E-06 52.4 6.7 44 136-179 929-978 (1004)
47 KOG4228 Protein tyrosine phosp 92.0 0.24 5.3E-06 54.9 5.6 59 123-181 714-782 (1087)
48 KOG4471 Phosphatidylinositol 3 91.1 0.39 8.4E-06 50.1 5.6 35 124-158 363-399 (717)
49 KOG4228 Protein tyrosine phosp 90.1 0.52 1.1E-05 52.4 5.8 47 133-179 1017-1068(1087)
50 KOG1089 Myotubularin-related p 82.4 3.3 7.2E-05 43.4 6.6 34 126-159 334-370 (573)
51 PF06602 Myotub-related: Myotu 77.3 5.1 0.00011 39.9 5.8 20 133-152 229-249 (353)
52 TIGR02300 FYDLN_acid conserved 74.2 1.9 4.1E-05 36.3 1.6 36 321-356 6-42 (129)
53 PF01641 SelR: SelR domain; I 74.2 3.2 6.9E-05 35.0 3.0 66 252-342 34-104 (124)
54 cd01518 RHOD_YceA Member of th 69.5 19 0.00042 28.2 6.5 26 135-163 62-87 (101)
55 PF10571 UPF0547: Uncharacteri 69.2 3 6.5E-05 25.3 1.3 21 326-349 2-23 (26)
56 smart00714 LITAF Possible memb 69.1 2.3 5E-05 31.6 0.9 19 320-338 48-66 (67)
57 PF09538 FYDLN_acid: Protein o 69.1 2.8 6.1E-05 34.5 1.5 33 321-353 6-39 (108)
58 PRK01415 hypothetical protein; 66.4 9.6 0.00021 36.0 4.7 27 134-163 171-197 (247)
59 PRK05508 methionine sulfoxide 65.3 7.1 0.00015 32.6 3.2 19 252-270 30-48 (119)
60 PF13453 zf-TFIIB: Transcripti 64.3 4.5 9.8E-05 27.0 1.5 25 326-350 1-30 (41)
61 PRK00222 methionine sulfoxide 63.8 7.6 0.00016 33.5 3.2 65 252-341 40-109 (142)
62 PF12773 DZR: Double zinc ribb 63.2 3.8 8.1E-05 28.3 1.0 32 322-353 10-42 (50)
63 PF11648 RIG-I_C-RD: C-termina 62.8 4.8 0.0001 33.8 1.8 26 321-346 57-83 (123)
64 PF10601 zf-LITAF-like: LITAF- 61.0 4.3 9.3E-05 30.6 1.1 17 322-338 56-72 (73)
65 PF11781 RRN7: RNA polymerase 61.0 4.3 9.4E-05 26.5 0.9 23 325-349 9-34 (36)
66 smart00400 ZnF_CHCC zinc finge 58.7 12 0.00025 26.5 3.0 32 138-171 23-54 (55)
67 PF13408 Zn_ribbon_recom: Reco 57.1 6.6 0.00014 27.6 1.5 21 321-341 2-22 (58)
68 TIGR00357 methionine-R-sulfoxi 56.3 12 0.00025 32.1 3.0 19 252-270 37-55 (134)
69 PF13248 zf-ribbon_3: zinc-rib 56.1 4.3 9.3E-05 24.4 0.3 13 322-334 14-26 (26)
70 PF03604 DNA_RNApol_7kD: DNA d 55.8 6.3 0.00014 25.1 1.0 23 327-350 3-27 (32)
71 PF09814 HECT_2: HECT-like Ubi 55.5 13 0.00028 36.6 3.7 19 254-272 105-123 (354)
72 PF10122 Mu-like_Com: Mu-like 53.7 4 8.7E-05 28.8 -0.2 16 255-270 4-19 (51)
73 PF03861 ANTAR: ANTAR domain; 52.0 21 0.00045 25.4 3.4 26 149-174 15-40 (56)
74 PF13240 zinc_ribbon_2: zinc-r 48.6 8.1 0.00018 22.6 0.6 21 326-349 1-22 (23)
75 PF13717 zinc_ribbon_4: zinc-r 48.6 10 0.00022 24.7 1.1 26 324-349 2-34 (36)
76 TIGR00373 conserved hypothetic 47.6 7.7 0.00017 34.0 0.6 22 327-349 112-137 (158)
77 PLN02160 thiosulfate sulfurtra 47.2 32 0.00069 29.1 4.3 28 133-163 79-107 (136)
78 PF08996 zf-DNA_Pol: DNA Polym 46.0 7.1 0.00015 35.2 0.1 14 339-352 43-57 (188)
79 cd01533 4RHOD_Repeat_2 Member 46.0 42 0.0009 26.7 4.7 25 135-162 67-91 (109)
80 PF06750 DiS_P_DiS: Bacterial 45.9 15 0.00032 29.3 1.9 31 322-352 31-70 (92)
81 PRK05416 glmZ(sRNA)-inactivati 45.1 39 0.00084 32.6 5.1 34 119-152 222-263 (288)
82 PF00096 zf-C2H2: Zinc finger, 45.1 4.4 9.5E-05 23.0 -0.9 19 256-274 1-19 (23)
83 PF07282 OrfB_Zn_ribbon: Putat 45.1 11 0.00023 27.9 1.0 24 326-349 30-55 (69)
84 PF01807 zf-CHC2: CHC2 zinc fi 44.9 24 0.00052 28.1 3.1 36 138-175 54-89 (97)
85 PRK00420 hypothetical protein; 43.6 13 0.00029 30.8 1.4 25 325-350 24-50 (112)
86 PF00581 Rhodanese: Rhodanese- 43.0 93 0.002 24.1 6.3 58 105-163 34-98 (113)
87 PF03119 DNA_ligase_ZBD: NAD-d 42.5 9.8 0.00021 23.4 0.3 10 326-335 1-10 (28)
88 PF09297 zf-NADH-PPase: NADH p 42.2 9.2 0.0002 24.0 0.2 23 326-348 5-29 (32)
89 PF02673 BacA: Bacitracin resi 42.1 25 0.00054 33.4 3.2 28 142-171 159-186 (259)
90 PF03966 Trm112p: Trm112p-like 42.1 13 0.00028 27.7 1.0 13 319-331 48-60 (68)
91 PF03668 ATP_bind_2: P-loop AT 41.7 48 0.001 32.0 5.0 17 136-152 244-260 (284)
92 TIGR02098 MJ0042_CXXC MJ0042 f 40.0 16 0.00035 23.6 1.1 13 322-334 23-35 (38)
93 PRK06266 transcription initiat 39.9 12 0.00026 33.5 0.7 45 146-196 21-65 (178)
94 PRK12554 undecaprenyl pyrophos 39.5 28 0.00061 33.4 3.1 26 143-170 166-191 (276)
95 PRK12380 hydrogenase nickel in 39.4 26 0.00056 28.9 2.5 28 320-348 66-94 (113)
96 TIGR03865 PQQ_CXXCW PQQ-depend 39.2 56 0.0012 28.5 4.8 27 135-163 117-143 (162)
97 TIGR00753 undec_PP_bacA undeca 39.1 29 0.00063 32.9 3.1 27 142-170 159-185 (255)
98 PRK03681 hypA hydrogenase nick 38.9 25 0.00053 29.1 2.3 29 321-349 67-96 (114)
99 COG2093 DNA-directed RNA polym 38.3 14 0.00031 27.2 0.7 18 325-342 19-36 (64)
100 COG0607 PspE Rhodanese-related 38.2 31 0.00067 27.0 2.8 23 134-158 61-83 (110)
101 smart00531 TFIIE Transcription 38.1 15 0.00033 31.6 1.0 16 322-337 121-136 (147)
102 PF13719 zinc_ribbon_5: zinc-r 37.8 19 0.00041 23.5 1.2 10 324-333 2-11 (37)
103 PF07295 DUF1451: Protein of u 37.7 23 0.0005 30.7 2.0 26 322-348 110-138 (146)
104 COG1660 Predicted P-loop-conta 37.3 34 0.00073 32.8 3.2 17 136-152 245-261 (286)
105 PRK00281 undecaprenyl pyrophos 37.2 33 0.00071 32.8 3.1 26 143-170 164-189 (268)
106 PRK00142 putative rhodanese-re 37.0 39 0.00086 33.0 3.8 26 135-163 172-197 (314)
107 cd01528 RHOD_2 Member of the R 36.5 80 0.0017 24.6 4.9 26 135-163 59-84 (101)
108 cd01532 4RHOD_Repeat_1 Member 36.2 52 0.0011 25.3 3.7 27 135-162 51-77 (92)
109 cd01523 RHOD_Lact_B Member of 36.1 54 0.0012 25.4 3.9 26 135-163 62-87 (100)
110 PF02591 DUF164: Putative zinc 36.0 17 0.00037 25.9 0.8 32 299-332 22-54 (56)
111 COG4738 Predicted transcriptio 35.6 40 0.00087 28.0 2.9 33 142-175 22-54 (124)
112 PRK05550 bifunctional methioni 35.1 31 0.00068 33.3 2.7 19 252-270 33-51 (283)
113 TIGR00100 hypA hydrogenase nic 34.5 28 0.0006 28.8 1.9 28 321-349 67-95 (115)
114 PRK14714 DNA polymerase II lar 34.4 28 0.00061 40.0 2.5 25 323-352 666-691 (1337)
115 TIGR00354 polC DNA polymerase, 34.0 23 0.00049 39.5 1.7 32 322-354 1010-1042(1095)
116 cd01520 RHOD_YbbB Member of th 33.9 78 0.0017 26.1 4.6 29 132-162 83-112 (128)
117 COG3809 Uncharacterized protei 33.6 25 0.00054 27.2 1.4 23 325-347 2-28 (88)
118 cd01448 TST_Repeat_1 Thiosulfa 33.4 59 0.0013 26.2 3.8 26 136-163 81-106 (122)
119 COG1933 Archaeal DNA polymeras 33.1 19 0.00041 33.7 0.8 36 323-361 166-202 (253)
120 KOG3399 Predicted Yippee-type 33.1 18 0.0004 30.3 0.6 24 253-276 13-36 (122)
121 COG4416 Com Mu-like prophage p 33.0 9.6 0.00021 27.2 -0.9 16 255-270 4-19 (60)
122 PRK00432 30S ribosomal protein 32.7 24 0.00051 24.8 1.0 8 325-332 21-28 (50)
123 TIGR03642 cas_csx13 CRISPR-ass 32.2 1.5E+02 0.0032 25.0 5.9 60 102-161 54-116 (124)
124 PF13912 zf-C2H2_6: C2H2-type 32.1 9.9 0.00021 22.4 -0.8 21 255-275 1-21 (27)
125 PRK08351 DNA-directed RNA poly 31.7 24 0.00051 26.0 1.0 17 326-342 17-33 (61)
126 COG2888 Predicted Zn-ribbon RN 30.9 14 0.0003 27.0 -0.4 12 253-264 36-47 (61)
127 COG1054 Predicted sulfurtransf 30.6 2.1E+02 0.0045 27.9 7.4 35 121-157 159-193 (308)
128 PRK11032 hypothetical protein; 30.5 36 0.00077 30.0 2.0 26 322-348 122-150 (160)
129 smart00659 RPOLCX RNA polymera 30.2 26 0.00057 23.9 0.9 12 323-334 18-29 (44)
130 COG1675 TFA1 Transcription ini 29.8 24 0.00052 31.6 0.9 11 255-265 61-71 (176)
131 PRK14018 trifunctional thiored 29.7 47 0.001 34.9 3.1 20 251-270 414-433 (521)
132 PF04343 DUF488: Protein of un 29.6 2.5E+02 0.0054 23.0 7.0 16 21-36 7-22 (122)
133 PRK00398 rpoP DNA-directed RNA 29.5 28 0.00061 23.6 1.0 11 324-334 21-31 (46)
134 PRK05320 rhodanese superfamily 29.1 73 0.0016 30.2 4.1 26 134-162 175-200 (257)
135 COG5629 Predicted metal-bindin 28.5 30 0.00065 32.9 1.3 35 322-356 167-211 (321)
136 COG1831 Predicted metal-depend 28.4 2.9E+02 0.0063 26.6 7.8 73 98-174 32-109 (285)
137 cd01522 RHOD_1 Member of the R 28.0 1.1E+02 0.0025 24.7 4.6 25 135-162 65-89 (117)
138 PF13344 Hydrolase_6: Haloacid 28.0 2.1E+02 0.0046 22.6 6.1 44 121-165 16-59 (101)
139 TIGR00190 thiC thiamine biosyn 27.4 2E+02 0.0044 29.2 6.9 52 122-173 140-214 (423)
140 COG1645 Uncharacterized Zn-fin 27.2 31 0.00068 29.3 1.1 11 322-332 42-52 (131)
141 PRK13352 thiamine biosynthesis 27.0 2E+02 0.0044 29.3 6.9 52 122-173 143-217 (431)
142 PRK14714 DNA polymerase II lar 27.0 34 0.00074 39.4 1.6 30 323-353 1252-1282(1337)
143 PF06044 DRP: Dam-replacing fa 26.6 17 0.00037 34.2 -0.7 25 316-340 23-48 (254)
144 PRK04023 DNA polymerase II lar 26.6 35 0.00076 38.3 1.6 32 322-354 1035-1067(1121)
145 smart00355 ZnF_C2H2 zinc finge 26.4 14 0.0003 20.7 -0.9 20 256-275 1-20 (26)
146 PF13894 zf-C2H2_4: C2H2-type 25.7 14 0.00031 20.4 -0.9 19 256-274 1-19 (24)
147 KOG0235 Phosphoglycerate mutas 25.1 2.6E+02 0.0056 25.9 6.8 52 113-170 130-186 (214)
148 PF08772 NOB1_Zn_bind: Nin one 24.8 28 0.00061 26.6 0.3 13 321-333 21-33 (73)
149 KOG4784 Uncharacterized conser 24.8 52 0.0011 32.5 2.2 87 252-341 100-201 (348)
150 PF09419 PGP_phosphatase: Mito 24.8 50 0.0011 29.3 2.0 31 2-33 14-46 (168)
151 PRK10886 DnaA initiator-associ 24.7 1.5E+02 0.0033 26.8 5.2 36 117-155 23-59 (196)
152 COG1198 PriA Primosomal protei 24.4 74 0.0016 34.9 3.5 49 254-348 434-483 (730)
153 TIGR03655 anti_R_Lar restricti 24.1 50 0.0011 23.2 1.5 12 326-337 3-14 (53)
154 PF12760 Zn_Tnp_IS1595: Transp 24.1 26 0.00057 23.8 0.1 9 325-333 19-27 (46)
155 cd04445 DEP_PLEK1 DEP (Disheve 24.0 96 0.0021 25.1 3.2 36 132-172 22-58 (99)
156 PF09082 DUF1922: Domain of un 24.0 28 0.00061 26.2 0.2 19 255-274 3-21 (68)
157 PRK11827 hypothetical protein; 23.8 43 0.00093 24.6 1.1 11 324-334 8-18 (60)
158 COG0794 GutQ Predicted sugar p 23.4 1.3E+02 0.0028 27.6 4.4 35 120-159 27-61 (202)
159 PF11403 Yeast_MT: Yeast metal 23.4 42 0.0009 21.6 0.8 8 341-348 33-40 (40)
160 COG1968 BacA Undecaprenyl pyro 23.3 82 0.0018 30.2 3.2 26 143-170 165-190 (270)
161 PF10302 DUF2407: DUF2407 ubiq 23.3 39 0.00084 27.2 0.9 10 135-144 86-95 (97)
162 cd01534 4RHOD_Repeat_3 Member 23.1 90 0.0019 24.0 3.0 26 135-163 57-82 (95)
163 KOG1247 Methionyl-tRNA synthet 23.1 19 0.0004 36.6 -1.2 55 297-355 111-180 (567)
164 PRK14890 putative Zn-ribbon RN 23.0 24 0.00053 25.7 -0.3 11 254-264 35-45 (59)
165 PF14205 Cys_rich_KTR: Cystein 22.8 46 0.001 23.9 1.1 9 325-333 5-13 (55)
166 smart00661 RPOL9 RNA polymeras 22.5 51 0.0011 22.6 1.3 8 324-331 20-27 (52)
167 PRK14715 DNA polymerase II lar 22.4 48 0.001 38.5 1.6 31 322-354 1540-1571(1627)
168 COG3091 SprT Zn-dependent meta 22.3 38 0.00081 29.6 0.7 14 253-266 138-151 (156)
169 PF07754 DUF1610: Domain of un 22.0 51 0.0011 19.6 1.0 10 322-331 14-23 (24)
170 PF01964 ThiC: ThiC family; I 22.0 2.1E+02 0.0045 29.1 5.8 52 122-173 139-213 (420)
171 PRK03824 hypA hydrogenase nick 21.7 67 0.0015 27.3 2.1 9 323-331 69-77 (135)
172 PF03853 YjeF_N: YjeF-related 21.6 73 0.0016 27.9 2.4 74 122-200 10-86 (169)
173 PRK13130 H/ACA RNA-protein com 21.6 77 0.0017 22.9 2.1 20 326-350 7-27 (56)
174 COG3707 AmiR Response regulato 21.5 88 0.0019 28.5 2.9 22 152-173 150-171 (194)
175 PRK12495 hypothetical protein; 21.5 47 0.001 30.8 1.1 14 321-334 55-68 (226)
176 COG0229 Conserved domain frequ 21.2 94 0.002 26.7 2.8 19 252-270 39-57 (140)
177 COG1571 Predicted DNA-binding 21.2 47 0.001 33.8 1.2 44 305-350 333-377 (421)
178 PF06677 Auto_anti-p27: Sjogre 21.1 52 0.0011 22.2 1.0 11 321-331 31-41 (41)
179 COG3478 Predicted nucleic-acid 20.7 47 0.001 24.7 0.8 11 323-333 3-13 (68)
180 PHA02325 hypothetical protein 20.6 54 0.0012 24.3 1.1 16 326-341 5-22 (72)
181 PF14803 Nudix_N_2: Nudix N-te 20.5 41 0.0009 21.7 0.4 9 326-334 2-10 (34)
182 PF10272 Tmpp129: Putative tra 20.1 42 0.00092 33.5 0.6 36 299-334 303-350 (358)
183 TIGR01391 dnaG DNA primase, ca 20.1 2.8E+02 0.006 28.2 6.5 37 138-176 55-91 (415)
184 cd01447 Polysulfide_ST Polysul 20.0 1E+02 0.0022 23.7 2.7 27 133-162 59-86 (103)
185 cd01443 Cdc25_Acr2p Cdc25 enzy 20.0 2.8E+02 0.006 22.0 5.4 16 136-151 68-83 (113)
186 PRK06835 DNA replication prote 20.0 52 0.0011 32.4 1.2 23 321-346 95-117 (329)
No 1
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.98 E-value=1.4e-31 Score=229.21 Aligned_cols=137 Identities=34% Similarity=0.527 Sum_probs=124.4
Q ss_pred CccccCCeEEcCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCC
Q 017789 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (366)
Q Consensus 2 P~~I~~~LylG~~~~a~d~~~L~~~gIt~Vlnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (366)
|++|.|+||+|+.+++.+.+.|+++||++||||+.+..
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~------------------------------------------ 38 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVP------------------------------------------ 38 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCC------------------------------------------
Confidence 89999999999999999999999999999999976210
Q ss_pred CCCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcchHHHHHHHHHHhc
Q 017789 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (366)
Q Consensus 82 ~~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~ 160 (366)
. ....++.|+++|+.|....++.+.|+.+++||+..+.+| +|||||.+|+|||+++++||||+..
T Consensus 39 ----~----------~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~ 104 (138)
T smart00195 39 ----N----------LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKYR 104 (138)
T ss_pred ----C----------CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHHh
Confidence 0 002357789999999878889999999999999999887 9999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCChhHHHHHHHHHHc
Q 017789 161 QLSSEGALESLRQSCESVCPNDGFLEQLKMFEEM 194 (366)
Q Consensus 161 ~~s~~eAl~~v~~~Rp~i~pn~~f~~qL~~~e~~ 194 (366)
|+++++|+++|+++||.+.||++|++||..||++
T Consensus 105 ~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 105 NLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred CCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 9999999999999999999999999999999974
No 2
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=5e-32 Score=247.80 Aligned_cols=144 Identities=29% Similarity=0.484 Sum_probs=130.9
Q ss_pred CCccccCCeEEcCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCC
Q 017789 1 MPYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGS 80 (366)
Q Consensus 1 ~P~~I~~~LylG~~~~a~d~~~L~~~gIt~Vlnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (366)
+|.+|+|+||||+..++.+.+.|++.||++||||+...
T Consensus 171 FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnl------------------------------------------ 208 (343)
T KOG1717|consen 171 FPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL------------------------------------------ 208 (343)
T ss_pred cchhhccchhcccccccccHHHHHhcCceEEEecCCCC------------------------------------------
Confidence 69999999999999999999999999999999997621
Q ss_pred CCCCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcchHHHHHHHHHHh
Q 017789 81 RSCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRT 159 (366)
Q Consensus 81 ~~~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~ 159 (366)
|+.+ ...-.+.|++||+.|.-.+++.+.|++|+.||++++.+. .|||||.+|+|||+||++||||++
T Consensus 209 -----pn~f-------e~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqk 276 (343)
T KOG1717|consen 209 -----PNNF-------ENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQK 276 (343)
T ss_pred -----cchh-------hcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHHH
Confidence 1111 123357899999999999999999999999999999988 999999999999999999999999
Q ss_pred cCCCHHHHHHHHHhhCCCCCCChhHHHHHHHHHHcCCCC
Q 017789 160 EQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGFKV 198 (366)
Q Consensus 160 ~~~s~~eAl~~v~~~Rp~i~pn~~f~~qL~~~e~~~~~~ 198 (366)
..+++.+|+++|+.++..|.||.+|+.||..||+++..-
T Consensus 277 l~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl~ 315 (343)
T KOG1717|consen 277 LNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGLE 315 (343)
T ss_pred hccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999987543
No 3
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=9.4e-31 Score=225.08 Aligned_cols=140 Identities=31% Similarity=0.398 Sum_probs=125.3
Q ss_pred ccccCCeEEcCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 017789 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (366)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~Vlnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (366)
++|.++|||++--.|.+...|+++|||+|||++.+.
T Consensus 18 SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-------------------------------------------- 53 (198)
T KOG1718|consen 18 SQITPSLFLSNGVAANDKLLLKKRKITCIINATTEV-------------------------------------------- 53 (198)
T ss_pred hhcCcceeEeccccccCHHHHHhcCceEEEEcccCC--------------------------------------------
Confidence 689999999988889999999999999999997621
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcchHHHHHHHHHHhcC
Q 017789 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQ 161 (366)
Q Consensus 83 ~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~~ 161 (366)
|+.. --++.|+.+|+.|.+...|.+||+.+.+.|+....+| ++||||.||+|||+++|+||||+..+
T Consensus 54 ---pn~~---------l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~ 121 (198)
T KOG1718|consen 54 ---PNTS---------LPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHC 121 (198)
T ss_pred ---CCcc---------CCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHHHHHHHHHHcc
Confidence 1100 0146689999999999999999999999999987654 99999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCCCCCChhHHHHHHHHHHcCCCC
Q 017789 162 LSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGFKV 198 (366)
Q Consensus 162 ~s~~eAl~~v~~~Rp~i~pn~~f~~qL~~~e~~~~~~ 198 (366)
+++.||+.++|++||.+.||-||++||..||+.++.-
T Consensus 122 msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~ 158 (198)
T KOG1718|consen 122 MSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGN 158 (198)
T ss_pred chHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999987653
No 4
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=2.6e-29 Score=240.88 Aligned_cols=148 Identities=35% Similarity=0.475 Sum_probs=130.8
Q ss_pred CccccCCeEEcCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCC
Q 017789 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (366)
Q Consensus 2 P~~I~~~LylG~~~~a~d~~~L~~~gIt~Vlnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (366)
+.+|.|+||+|+..++.+.+.|+++||+||||+.......
T Consensus 75 ~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~---------------------------------------- 114 (285)
T KOG1716|consen 75 IVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNP---------------------------------------- 114 (285)
T ss_pred ceeecCCceecCcccccchhhHHHcCCCEEEEecccCCcc----------------------------------------
Confidence 4679999999999999999999999999999997622000
Q ss_pred CCCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcchHHHHHHHHHHhc
Q 017789 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (366)
Q Consensus 82 ~~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~ 160 (366)
. + .....+.|+.|++.|.+..+|..+|+++++||+.++.+| +|||||.+|+|||+|+++||||+.+
T Consensus 115 -------~-----~-~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~ 181 (285)
T KOG1716|consen 115 -------R-----F-LKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYE 181 (285)
T ss_pred -------c-----c-ccccCceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHc
Confidence 0 0 011157889999999999999999999999999999987 9999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCChhHHHHHHHHHHcCCCCCCCC
Q 017789 161 QLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGFKVNRGS 202 (366)
Q Consensus 161 ~~s~~eAl~~v~~~Rp~i~pn~~f~~qL~~~e~~~~~~~~~~ 202 (366)
+|++++|+++|+++||.+.||.||+.||..||+++.......
T Consensus 182 ~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~~ 223 (285)
T KOG1716|consen 182 GLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPSQ 223 (285)
T ss_pred CCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCccc
Confidence 999999999999999999999999999999999987755433
No 5
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.96 E-value=1.5e-28 Score=208.81 Aligned_cols=131 Identities=35% Similarity=0.547 Sum_probs=117.2
Q ss_pred eEEcCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 017789 9 LFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPTK 88 (366)
Q Consensus 9 LylG~~~~a~d~~~L~~~gIt~Vlnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (366)
||||+...+. ...|+++||++|||++.+... +
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~---------------------------------------------~-- 32 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPN---------------------------------------------P-- 32 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSST---------------------------------------------S--
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcC---------------------------------------------c--
Confidence 7999999999 999999999999999762100 0
Q ss_pred hhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcchHHHHHHHHHHhcCCCHHHH
Q 017789 89 LLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGA 167 (366)
Q Consensus 89 ~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eA 167 (366)
. .....++.++++|+.|....++.+.|+.+++||+++..+| +|||||.+|+|||+++++||||...+|++++|
T Consensus 33 ~------~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A 106 (133)
T PF00782_consen 33 Y------FYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEA 106 (133)
T ss_dssp H------HHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHH
T ss_pred h------hcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHHcCCCHHHH
Confidence 0 0123357889999999888999999999999999998876 99999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCChhHHHHHHHHHH
Q 017789 168 LESLRQSCESVCPNDGFLEQLKMFEE 193 (366)
Q Consensus 168 l~~v~~~Rp~i~pn~~f~~qL~~~e~ 193 (366)
+++|+++||.+.||++|++||..||+
T Consensus 107 ~~~v~~~rp~~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 107 IEYVRSRRPQINPNPSFIRQLYEYEK 132 (133)
T ss_dssp HHHHHHHSTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999996
No 6
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.96 E-value=4.8e-28 Score=206.67 Aligned_cols=137 Identities=37% Similarity=0.527 Sum_probs=122.6
Q ss_pred CccccCCeEEcCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCC
Q 017789 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (366)
Q Consensus 2 P~~I~~~LylG~~~~a~d~~~L~~~gIt~Vlnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (366)
+++|.|+||+|+.+++.|.+.|+++||++|||++++.+.
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~----------------------------------------- 40 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN----------------------------------------- 40 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC-----------------------------------------
Confidence 589999999999999999999999999999999762100
Q ss_pred CCCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcchHHHHHHHHHHhc
Q 017789 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (366)
Q Consensus 82 ~~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~ 160 (366)
......++.|+++|+.|....++...++.+++||+...++| +|||||.+|+|||+++++||||...
T Consensus 41 -------------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~ 107 (139)
T cd00127 41 -------------ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTL 107 (139)
T ss_pred -------------cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHHc
Confidence 00112357789999999888888899999999999998877 9999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCChhHHHHHHHHH
Q 017789 161 QLSSEGALESLRQSCESVCPNDGFLEQLKMFE 192 (366)
Q Consensus 161 ~~s~~eAl~~v~~~Rp~i~pn~~f~~qL~~~e 192 (366)
++++++|+++|+++||.+.||++|++||..||
T Consensus 108 ~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 108 GLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999996
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.91 E-value=7.1e-24 Score=220.34 Aligned_cols=141 Identities=26% Similarity=0.374 Sum_probs=120.6
Q ss_pred CccccCCeEEcCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCC
Q 017789 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (366)
Q Consensus 2 P~~I~~~LylG~~~~a~d~~~L~~~gIt~Vlnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (366)
+++|.|+||||+...+.|.+.|+++||++|||++.+.+
T Consensus 95 ~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~------------------------------------------ 132 (547)
T PRK12361 95 IQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFD------------------------------------------ 132 (547)
T ss_pred ceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccc------------------------------------------
Confidence 36899999999999999999999999999999975210
Q ss_pred CCCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcchHHHHHHHHHHh-
Q 017789 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRT- 159 (366)
Q Consensus 82 ~~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~- 159 (366)
..... ....++.|+++|+.|...++ .++|+++++||++.+++| +|||||.+|+|||+++++||||.+
T Consensus 133 -~~~~~---------~~~~~i~yl~iPi~D~~~p~-~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~ 201 (547)
T PRK12361 133 -GLDWS---------LTEEDIDYLNIPILDHSVPT-LAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKD 201 (547)
T ss_pred -ccccc---------ccccCceEEEeecCCCCCCc-HHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhc
Confidence 00000 01124678999999977654 577999999999999876 999999999999999999999976
Q ss_pred cCCCHHHHHHHHHhhCCCCCCChhHHHHHHHHHHcC
Q 017789 160 EQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMG 195 (366)
Q Consensus 160 ~~~s~~eAl~~v~~~Rp~i~pn~~f~~qL~~~e~~~ 195 (366)
.++++++|+++|+++||.+.||++|+++|+.|++.+
T Consensus 202 ~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 202 PDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQG 237 (547)
T ss_pred cCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Confidence 589999999999999999999999999999999875
No 8
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.82 E-value=6e-20 Score=156.40 Aligned_cols=141 Identities=24% Similarity=0.414 Sum_probs=117.9
Q ss_pred cccCCeEEcCHH-hHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 017789 4 LVREHLFIGNIS-DAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (366)
Q Consensus 4 ~I~~~LylG~~~-~a~d~~~L~~~gIt~Vlnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (366)
+|++.+.+|.++ ...+.+.++.+|+..|+.+.++-+
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE------------------------------------------- 63 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYE------------------------------------------- 63 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCchh-------------------------------------------
Confidence 466777777763 336778899999999999977211
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcchHHHHHHHHHHhcC
Q 017789 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQ 161 (366)
Q Consensus 83 ~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~~ 161 (366)
-..+.. . =..++++++.||..|....+-.+.+.++++||++-..-| .|+|||.||.+||+|++++|||...+
T Consensus 64 ~~a~s~-~------wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~ 136 (183)
T KOG1719|consen 64 LLAPSN-L------WKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKN 136 (183)
T ss_pred hhhhhH-H------HHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcC
Confidence 011111 1 124578899999999888888888999999999988888 89999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCCCCCChhHHHHHHHHHHc
Q 017789 162 LSSEGALESLRQSCESVCPNDGFLEQLKMFEEM 194 (366)
Q Consensus 162 ~s~~eAl~~v~~~Rp~i~pn~~f~~qL~~~e~~ 194 (366)
|++++|+++|++.||.+-..+++++.|.+|.+.
T Consensus 137 wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~ 169 (183)
T KOG1719|consen 137 WTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQ 169 (183)
T ss_pred CCHHHHHHHHHhcCcceeecHHHHHHHHHHHHH
Confidence 999999999999999999999999999999874
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.81 E-value=3.1e-19 Score=158.12 Aligned_cols=93 Identities=18% Similarity=0.265 Sum_probs=79.3
Q ss_pred cceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhC----C-cEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHhh
Q 017789 100 LKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKE----G-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQS 174 (366)
Q Consensus 100 ~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~----g-~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~v~~~ 174 (366)
.++.++++|+.|...+. .+.+...++++++.++. | +|+|||.+|+|||++++++|||...++++++|+++|+++
T Consensus 60 ~gi~~~~~p~~D~~~P~-~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~ 138 (166)
T PTZ00242 60 NGIEVHDWPFDDGAPPP-KAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREK 138 (166)
T ss_pred CCCEEEecCCCCCCCCC-HHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 46778999998866443 44567778888877643 5 999999999999999999999999889999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHc
Q 017789 175 CESVCPNDGFLEQLKMFEEM 194 (366)
Q Consensus 175 Rp~i~pn~~f~~qL~~~e~~ 194 (366)
||.+ +|+.|+.+|..|++.
T Consensus 139 R~~~-i~~~Q~~~l~~~~~~ 157 (166)
T PTZ00242 139 RKGA-INQTQLQFLKKYKPR 157 (166)
T ss_pred CCCC-chHHHHHHHHHHHHH
Confidence 9976 589999999999974
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.80 E-value=7e-19 Score=162.04 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=83.5
Q ss_pred CcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHhhCCC
Q 017789 99 DLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCES 177 (366)
Q Consensus 99 ~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~v~~~Rp~ 177 (366)
..++.++++|+.|...++ .+.+++.+++|+..+..| +|+|||.+|+|||+++++||||. .|+++++|+++||++||.
T Consensus 135 ~~GI~~~~lpipDg~aPs-~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPg 212 (241)
T PTZ00393 135 SAGINVHELIFPDGDAPT-VDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKG 212 (241)
T ss_pred HcCCeEEEeecCCCCCCC-HHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCC
Confidence 346778889999976555 556788899999888877 89999999999999999999998 699999999999999998
Q ss_pred CCCChhHHHHHHHHHHcCC
Q 017789 178 VCPNDGFLEQLKMFEEMGF 196 (366)
Q Consensus 178 i~pn~~f~~qL~~~e~~~~ 196 (366)
+ +|..|++.|+.|++...
T Consensus 213 A-In~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 213 A-INKRQLQFLKAYKKKKK 230 (241)
T ss_pred C-CCHHHHHHHHHHHHhcc
Confidence 7 69999999999999753
No 11
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.63 E-value=1.9e-15 Score=135.62 Aligned_cols=96 Identities=28% Similarity=0.405 Sum_probs=79.8
Q ss_pred CcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcchHHHHHHHHHHh-cCCCHHHHHHHHHhhCC
Q 017789 99 DLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRT-EQLSSEGALESLRQSCE 176 (366)
Q Consensus 99 ~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~-~~~s~~eAl~~v~~~Rp 176 (366)
..++.++++|+.|...+++ ..++++++||++++++| +|+|||.+|+|||+||++||||.. ..+..++|+.+++.+||
T Consensus 70 ~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~ 148 (180)
T COG2453 70 NDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRP 148 (180)
T ss_pred cCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 4467789999999988887 66999999999999998 999999999999999999999999 55677777777788887
Q ss_pred CCCCChhHHHHHHHHHHcCCC
Q 017789 177 SVCPNDGFLEQLKMFEEMGFK 197 (366)
Q Consensus 177 ~i~pn~~f~~qL~~~e~~~~~ 197 (366)
. ++....+++..++...+.
T Consensus 149 ~--~v~~~~q~~~~~e~~~~~ 167 (180)
T COG2453 149 G--AVVTEIQHLFELEQELFR 167 (180)
T ss_pred c--ccccHHHHHHHHHHHHHH
Confidence 5 666666666666665443
No 12
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.59 E-value=1.7e-14 Score=129.19 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=81.6
Q ss_pred CcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHhhCCCC
Q 017789 99 DLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESV 178 (366)
Q Consensus 99 ~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~v~~~Rp~i 178 (366)
+.+|.++.+++.|...+++.. +.+.++.++.+++.|+|.|||.+|++||++|++||||+.+|+++.||++.||..||.+
T Consensus 113 ~~Gi~h~~l~f~Dg~tP~~~~-v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~RpG~ 191 (225)
T KOG1720|consen 113 DAGIDHHDLFFADGSTPTDAI-VKEFVKIVENAEKGGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICRPGA 191 (225)
T ss_pred ccCceeeeeecCCCCCCCHHH-HHHHHHHHHHHHhcCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCcc
Confidence 457889999999976665433 5677777788888669999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHH
Q 017789 179 CPNDGFLEQLKMFEE 193 (366)
Q Consensus 179 ~pn~~f~~qL~~~e~ 193 (366)
-..+.+...|.+|..
T Consensus 192 V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 192 VIGPQQHKLLHKQRD 206 (225)
T ss_pred ccCHHHHHHHHHHHH
Confidence 999988888887765
No 13
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.37 E-value=1.5e-12 Score=113.80 Aligned_cols=106 Identities=20% Similarity=0.330 Sum_probs=67.4
Q ss_pred HhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCcchhhhhhhc
Q 017789 17 AADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPTKLLYSLEYA 96 (366)
Q Consensus 17 a~d~~~L~~~gIt~Vlnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 96 (366)
..|++.|++.|++.||++.+ ..|+..+.+++.. ..
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~-----------------~~EL~~l~Vp~L~--------------------------~~-- 95 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLT-----------------DHELARLGVPDLG--------------------------EA-- 95 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S------------------HHHHHHTT-TTHH--------------------------HH--
T ss_pred HHHHHHHHHCCCCEEEEeCc-----------------HHHHHHcCCccHH--------------------------HH--
Confidence 67888999999999999977 4466555542222 11
Q ss_pred cCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcchHHHHHHHHHHhc-CCCHHHHH
Q 017789 97 GKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE-QLSSEGAL 168 (366)
Q Consensus 97 ~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~-~~s~~eAl 168 (366)
....++.++++||.|...+++.... +.++.|...+++| +|+|||.+|++||++|++++|+.-. .+++++|+
T Consensus 96 ~~~~Gi~~~h~PI~D~~aPd~~~~~-~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 96 AQARGIAWHHLPIPDGSAPDFAAAW-QILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHTT-EEEE----TTS---HHHHH-HHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHcCCEEEecCccCCCCCCHHHHH-HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 2234678889999998888865544 5778888888888 9999999999999999988887753 48999886
No 14
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.26 E-value=1.8e-11 Score=108.21 Aligned_cols=137 Identities=9% Similarity=0.143 Sum_probs=78.3
Q ss_pred cccCCeEEcCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 017789 4 LVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSC 83 (366)
Q Consensus 4 ~I~~~LylG~~~~a~d~~~L~~~gIt~Vlnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (366)
.|.++||-|+.+.+.+...|+++|+++||+|..+.
T Consensus 9 ~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~--------------------------------------------- 43 (164)
T PF03162_consen 9 MVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEP--------------------------------------------- 43 (164)
T ss_dssp EEETTEEEESS--HHHHHHHHHHT-SEEEE--SS----------------------------------------------
T ss_pred CCCCCccCCCCCChhhHHHHHHCCCceEEEecCCC---------------------------------------------
Confidence 58899999999999999999999999999996521
Q ss_pred CCCcchhhhhhhccCCcceEEEEEecCCCCCc---cHHHHHHHHHHHHHHHHhCCcEEEEcCCCCcchHHHHHHHHHHhc
Q 017789 84 LSPTKLLYSLEYAGKDLKLVRMTVPIRDMESE---NLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTE 160 (366)
Q Consensus 84 ~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~---~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AYLm~~~ 160 (366)
.+... .. -....++...++++...... ...+.+.++++.|-+. ++.+|||||..|..|+++|+++|- +.+
T Consensus 44 -~~~~~--~~--f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~-~n~PvLiHC~~G~~rTG~vvg~lR-k~Q 116 (164)
T PF03162_consen 44 -PSQDF--LE--FAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDP-RNYPVLIHCNHGKDRTGLVVGCLR-KLQ 116 (164)
T ss_dssp ---HHH--HH--HHHHTT-EEEE-------GGG----HHHHHHHHHHHH-G-GG-SEEEE-SSSSSHHHHHHHHHH-HHT
T ss_pred -CCHHH--HH--HHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCC-CCCCEEEEeCCCCcchhhHHHHHH-HHc
Confidence 00000 00 11233566677777654331 1233455555554332 245999999999999999999998 778
Q ss_pred CCCHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q 017789 161 QLSSEGALESLRQSCESVCPNDGFLEQLKMFEE 193 (366)
Q Consensus 161 ~~s~~eAl~~v~~~Rp~i~pn~~f~~qL~~~e~ 193 (366)
||++..|++..+.--. ...+..-.+.++.|..
T Consensus 117 ~W~~~~i~~Ey~~f~~-~~~~~~~~~fIe~f~~ 148 (164)
T PF03162_consen 117 GWSLSSIFDEYRRFAG-PKIRYLDEQFIELFDV 148 (164)
T ss_dssp TB-HHHHHHHHHHHHG-GG--HHHHHHHHT---
T ss_pred CCCHHHHHHHHHHhcC-CCCcHHHHHHHHhcCc
Confidence 9999999999875322 1345555555555554
No 15
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.26 E-value=6.5e-11 Score=101.44 Aligned_cols=127 Identities=17% Similarity=0.167 Sum_probs=83.6
Q ss_pred ccccCCeEEcCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 017789 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (366)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~Vlnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (366)
.+|.+.+|+++.....|.+.|+++||++|||+....+ .
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E-----------------~------------------------- 40 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDRE-----------------E------------------------- 40 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCC-----------------C-------------------------
Confidence 5899999999999999999999999999999975210 0
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEcCCCCcchHHHHHHHHHHhcCC
Q 017789 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (366)
Q Consensus 83 ~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AYLm~~~~~ 162 (366)
...|... .+.......++.|+++|+..... + ........++++. ..++||+||.+|. ||+.+.+.++.. .|+
T Consensus 41 ~~~p~~~--~~~~~a~~~gl~y~~iPv~~~~~-~-~~~v~~f~~~~~~--~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~ 112 (135)
T TIGR01244 41 ESQPDFA--QIKAAAEAAGVTYHHQPVTAGDI-T-PDDVETFRAAIGA--AEGPVLAYCRSGT-RSSLLWGFRQAA-EGV 112 (135)
T ss_pred CCCCCHH--HHHHHHHHCCCeEEEeecCCCCC-C-HHHHHHHHHHHHh--CCCCEEEEcCCCh-HHHHHHHHHHHH-cCC
Confidence 0011100 00001122467888999875332 1 1112222333332 2579999999999 987776555544 799
Q ss_pred CHHHHHHHHHhhCCCCC
Q 017789 163 SSEGALESLRQSCESVC 179 (366)
Q Consensus 163 s~~eAl~~v~~~Rp~i~ 179 (366)
+.+++++..+..--.+.
T Consensus 113 ~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 113 PVEEIVRRAQAAGYDLS 129 (135)
T ss_pred CHHHHHHHHHHcCCCcc
Confidence 99999999987654443
No 16
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.20 E-value=2.5e-10 Score=95.66 Aligned_cols=89 Identities=24% Similarity=0.365 Sum_probs=68.3
Q ss_pred ceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhC--C-cEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHhhCCC
Q 017789 101 KLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKE--G-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCES 177 (366)
Q Consensus 101 ~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~--g-~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~v~~~Rp~ 177 (366)
+|..+..|.+|.. ++..+..+..++.+....++ | .|.|||.+|++|.+.+++.-|+.. ||.+++|++++|++|.
T Consensus 62 GI~Vldw~f~dg~-ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalalie~-gmkyedave~ir~krr- 138 (173)
T KOG2836|consen 62 GITVLDWPFDDGA-PPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALIEA-GMKYEDAVEMIRQKRR- 138 (173)
T ss_pred CceEeecccccCC-CCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHHHc-cccHHHHHHHHHHHhh-
Confidence 6777888888844 44455566667766655543 5 799999999999998887777665 9999999999999998
Q ss_pred CCCChhHHHHHHHHH
Q 017789 178 VCPNDGFLEQLKMFE 192 (366)
Q Consensus 178 i~pn~~f~~qL~~~e 192 (366)
-..|..++..|+.|.
T Consensus 139 ga~n~kql~~lekyr 153 (173)
T KOG2836|consen 139 GAINSKQLLYLEKYR 153 (173)
T ss_pred ccccHHHHHHHHHhC
Confidence 567777666666654
No 17
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.06 E-value=2.1e-09 Score=86.19 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=61.1
Q ss_pred EEecCCCCCccHHHHHHHHHHHHHHHHh----CCcEEEEcCCCCcchHHHHHHHHHHhc------CCCHHHHHHHHHhhC
Q 017789 106 TVPIRDMESENLLDYLDVCFDFIDRRRK----EGGVLVHCFAGVSRSAAIITAYLMRTE------QLSSEGALESLRQSC 175 (366)
Q Consensus 106 ~ipi~D~~~~~l~~~~~~~~~fI~~~~~----~g~VLVHC~aG~sRS~tvv~AYLm~~~------~~s~~eAl~~v~~~R 175 (366)
+.+..|...++....|.+.++.++.... +++|+|||.+|+|||++++++|+|... ..++.+++..+|..|
T Consensus 7 ~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r 86 (105)
T smart00012 7 YTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQR 86 (105)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhh
Confidence 3344444434333445555555555543 459999999999999999999998763 378899999999999
Q ss_pred CCCCCChhHHHHHH
Q 017789 176 ESVCPNDGFLEQLK 189 (366)
Q Consensus 176 p~i~pn~~f~~qL~ 189 (366)
|....+..+...+.
T Consensus 87 ~~~~~~~~q~~~~~ 100 (105)
T smart00012 87 PGMVQTFEQYLFLY 100 (105)
T ss_pred hhhCCcHHHHHHHH
Confidence 98888776665543
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.06 E-value=2.1e-09 Score=86.19 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=61.1
Q ss_pred EEecCCCCCccHHHHHHHHHHHHHHHHh----CCcEEEEcCCCCcchHHHHHHHHHHhc------CCCHHHHHHHHHhhC
Q 017789 106 TVPIRDMESENLLDYLDVCFDFIDRRRK----EGGVLVHCFAGVSRSAAIITAYLMRTE------QLSSEGALESLRQSC 175 (366)
Q Consensus 106 ~ipi~D~~~~~l~~~~~~~~~fI~~~~~----~g~VLVHC~aG~sRS~tvv~AYLm~~~------~~s~~eAl~~v~~~R 175 (366)
+.+..|...++....|.+.++.++.... +++|+|||.+|+|||++++++|+|... ..++.+++..+|..|
T Consensus 7 ~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r 86 (105)
T smart00404 7 YTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQR 86 (105)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhh
Confidence 3344444434333445555555555543 459999999999999999999998763 378899999999999
Q ss_pred CCCCCChhHHHHHH
Q 017789 176 ESVCPNDGFLEQLK 189 (366)
Q Consensus 176 p~i~pn~~f~~qL~ 189 (366)
|....+..+...+.
T Consensus 87 ~~~~~~~~q~~~~~ 100 (105)
T smart00404 87 PGMVQTFEQYLFLY 100 (105)
T ss_pred hhhCCcHHHHHHHH
Confidence 98888776665543
No 19
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.97 E-value=4.3e-09 Score=90.13 Aligned_cols=71 Identities=27% Similarity=0.375 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHHHHHHhCCcEEEEcCCCCcchHHHH-HHHHHHhcCCCHHHHHHHHHhhCCCCCCChhHHH
Q 017789 116 NLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAII-TAYLMRTEQLSSEGALESLRQSCESVCPNDGFLE 186 (366)
Q Consensus 116 ~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv-~AYLm~~~~~s~~eAl~~v~~~Rp~i~pn~~f~~ 186 (366)
.-..|.+..++|+++.-+..++||||.+|+|||.+++ +|-|.....++..+..+.++..+|.+.||+..+.
T Consensus 75 p~e~Hv~~i~DF~~~wp~~apllIHC~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rlia 146 (172)
T COG5350 75 PGEAHVRAIIDFADEWPRFAPLLIHCYAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIA 146 (172)
T ss_pred CCHHHHHHHHHHHhcCccccceeeeeccccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHH
Confidence 3357899999999999777899999999999997654 3445666789999999999999999999987764
No 20
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.96 E-value=1.8e-09 Score=89.22 Aligned_cols=102 Identities=15% Similarity=0.209 Sum_probs=55.4
Q ss_pred ccccCCeEEcCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 017789 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (366)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~Vlnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (366)
.+|.+.+|+++.....+++.|++.||++|||+....+
T Consensus 3 ~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E------------------------------------------- 39 (110)
T PF04273_consen 3 RQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGE------------------------------------------- 39 (110)
T ss_dssp EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTS-------------------------------------------
T ss_pred EecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCC-------------------------------------------
Confidence 4799999999999999999999999999999965210
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEcCCCCcchHHHHH
Q 017789 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIIT 153 (366)
Q Consensus 83 ~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~ 153 (366)
.+.......+.......++.|.+||+.... .. .+.+....+.+++. .++||+||..|. ||.++.+
T Consensus 40 -~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~-~~-~~~v~~f~~~l~~~--~~Pvl~hC~sG~-Ra~~l~~ 104 (110)
T PF04273_consen 40 -EPGQPSSAEEAAAAEALGLQYVHIPVDGGA-IT-EEDVEAFADALESL--PKPVLAHCRSGT-RASALWA 104 (110)
T ss_dssp -TTT-T-HHCHHHHHHHCT-EEEE----TTT----HHHHHHHHHHHHTT--TTSEEEE-SCSH-HHHHHHH
T ss_pred -CCCCCCHHHHHHHHHHcCCeEEEeecCCCC-CC-HHHHHHHHHHHHhC--CCCEEEECCCCh-hHHHHHH
Confidence 000011111223345668899999998632 11 22233333333321 469999999995 9866543
No 21
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.77 E-value=5.8e-08 Score=90.00 Aligned_cols=91 Identities=16% Similarity=0.212 Sum_probs=64.8
Q ss_pred CcceEEEEEe-cCCCCCccHHHHHHHHHHHHHHHHh---CCcEEEEcCCCCcchHHHHHHHHHHhc-----CCCHHHHHH
Q 017789 99 DLKLVRMTVP-IRDMESENLLDYLDVCFDFIDRRRK---EGGVLVHCFAGVSRSAAIITAYLMRTE-----QLSSEGALE 169 (366)
Q Consensus 99 ~~~i~~l~ip-i~D~~~~~l~~~~~~~~~fI~~~~~---~g~VLVHC~aG~sRS~tvv~AYLm~~~-----~~s~~eAl~ 169 (366)
...+.++++. ..|...++....|.+.++.++.... .++|+|||.+|+|||+++++++++... ..++.+|+.
T Consensus 127 ~~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~ 206 (231)
T cd00047 127 TRTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVK 206 (231)
T ss_pred ceEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3345555554 2344433333445555555655543 459999999999999999999876543 589999999
Q ss_pred HHHhhCCCCCCChhHHHHHH
Q 017789 170 SLRQSCESVCPNDGFLEQLK 189 (366)
Q Consensus 170 ~v~~~Rp~i~pn~~f~~qL~ 189 (366)
.||+.|+.+-.+..+...+.
T Consensus 207 ~iR~~R~~~v~~~~Qy~f~~ 226 (231)
T cd00047 207 ELRSQRPGMVQTEEQYIFLY 226 (231)
T ss_pred HHHhccccccCCHHHHHHHH
Confidence 99999999888877666554
No 22
>PLN02727 NAD kinase
Probab=98.69 E-value=6.7e-08 Score=103.42 Aligned_cols=110 Identities=9% Similarity=0.135 Sum_probs=77.3
Q ss_pred CeEEcCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 017789 8 HLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPT 87 (366)
Q Consensus 8 ~LylG~~~~a~d~~~L~~~gIt~Vlnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (366)
.+|+++...+.++++|.++||++|||+..+.+ +..+
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E-------------------------------------~~q~------- 297 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIV-------------------------------------KDNF------- 297 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCc-------------------------------------CCCc-------
Confidence 48999999999999999999999999976210 0000
Q ss_pred chhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEcCCCCcchHHHHHHHHHHhcCCCH
Q 017789 88 KLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSS 164 (366)
Q Consensus 88 ~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AYLm~~~~~s~ 164 (366)
....+.......++.|++||+.+..... .+.+++..+++++. ...+||+||..|..|+++++++||.+..+...
T Consensus 298 -~~~ee~eAae~~GL~yVhIPVs~~~apt-~EqVe~fa~~l~~s-lpkPVLvHCKSGarRAGamvA~yl~~~~~~~~ 371 (986)
T PLN02727 298 -YQAAVDDAISSGKIEVVKIPVEVRTAPS-AEQVEKFASLVSDS-SKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAE 371 (986)
T ss_pred -hhHHHHHHHHHcCCeEEEeecCCCCCCC-HHHHHHHHHHHHhh-cCCCEEEECCCCCchHHHHHHHHHHHHcccch
Confidence 0111222334457889999997645433 33355555656332 25699999999999999999999998766543
No 23
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.64 E-value=1.6e-07 Score=88.61 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=62.0
Q ss_pred ceEEEEEec-CCCCCccHHHHHHHHHHHHHHHHh--CCcEEEEcCCCCcchHHHHHHHHHHh-----cCCCHHHHHHHHH
Q 017789 101 KLVRMTVPI-RDMESENLLDYLDVCFDFIDRRRK--EGGVLVHCFAGVSRSAAIITAYLMRT-----EQLSSEGALESLR 172 (366)
Q Consensus 101 ~i~~l~ipi-~D~~~~~l~~~~~~~~~fI~~~~~--~g~VLVHC~aG~sRS~tvv~AYLm~~-----~~~s~~eAl~~v~ 172 (366)
.+.++++.- .|...+.-...+.+.+..++.... .++|+|||.+|+|||+++++++++.. ...++.+++..||
T Consensus 157 ~v~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR 236 (258)
T smart00194 157 TVTHYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELR 236 (258)
T ss_pred EEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 344444332 343333223334444555555444 46999999999999999999987643 4689999999999
Q ss_pred hhCCCCCCChhHHHHHH
Q 017789 173 QSCESVCPNDGFLEQLK 189 (366)
Q Consensus 173 ~~Rp~i~pn~~f~~qL~ 189 (366)
+.|+.+-.+..+...+.
T Consensus 237 ~~R~~~v~~~~Qy~f~~ 253 (258)
T smart00194 237 SQRPGMVQTEEQYIFLY 253 (258)
T ss_pred hccccccCCHHHHHHHH
Confidence 99999988887776553
No 24
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.55 E-value=8.8e-07 Score=73.12 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=78.8
Q ss_pred ccccCCeEEcCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 017789 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (366)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~Vlnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (366)
.+|.+.|+|++.....|+..++.+|++.|||-...- |-
T Consensus 4 ~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDg-----------------Ee------------------------- 41 (130)
T COG3453 4 RRINDRLSVSGQISPADIASIAALGFKSIICNRPDG-----------------EE------------------------- 41 (130)
T ss_pred eecccceeecCCCCHHHHHHHHHhccceecccCCCC-----------------CC-------------------------
Confidence 479999999999999999999999999999995411 00
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHh--CCcEEEEcCCCCcchHHHHHHHHHHhc
Q 017789 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRK--EGGVLVHCFAGVSRSAAIITAYLMRTE 160 (366)
Q Consensus 83 ~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~--~g~VLVHC~aG~sRS~tvv~AYLm~~~ 160 (366)
...|. .-.+.......++.|.+||+.-.... ++.++-+.+++. +|+||.||..| .||.++= +.--...
T Consensus 42 ~~QP~--~~~i~~aa~~aGl~y~~iPV~~~~iT------~~dV~~f~~Al~eaegPVlayCrsG-tRs~~ly-~~~~~~~ 111 (130)
T COG3453 42 PGQPG--FAAIAAAAEAAGLTYTHIPVTGGGIT------EADVEAFQRALDEAEGPVLAYCRSG-TRSLNLY-GLGELDG 111 (130)
T ss_pred CCCCC--hHHHHHHHHhcCCceEEeecCCCCCC------HHHHHHHHHHHHHhCCCEEeeecCC-chHHHHH-HHHHHhc
Confidence 00111 11223334456788999999863322 122333333332 68999999999 5885442 3223566
Q ss_pred CCCHHHHHHHHHhh
Q 017789 161 QLSSEGALESLRQS 174 (366)
Q Consensus 161 ~~s~~eAl~~v~~~ 174 (366)
||+.+++.++=+.+
T Consensus 112 gm~~de~~a~g~a~ 125 (130)
T COG3453 112 GMSRDEIEALGQAA 125 (130)
T ss_pred CCCHHHHHHHHHhh
Confidence 89999887765543
No 25
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.40 E-value=2.1e-06 Score=75.74 Aligned_cols=35 Identities=31% Similarity=0.562 Sum_probs=23.6
Q ss_pred CcEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHH
Q 017789 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALES 170 (366)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~ 170 (366)
++|||||.+|..|++. ++|.|+...|.+.++.++-
T Consensus 125 ~p~l~HC~aGKDRTG~-~~alll~~lGV~~~~I~~D 159 (164)
T PF13350_consen 125 GPVLFHCTAGKDRTGV-VAALLLSLLGVPDEDIIAD 159 (164)
T ss_dssp --EEEE-SSSSSHHHH-HHHHHHHHTT--HHHHHHH
T ss_pred CcEEEECCCCCccHHH-HHHHHHHHcCCCHHHHHHH
Confidence 6999999999999954 5566667779998877653
No 26
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.24 E-value=6.2e-06 Score=83.68 Aligned_cols=94 Identities=18% Similarity=0.279 Sum_probs=65.3
Q ss_pred ceEEEEEec-CCCCCccHHHHHHHHHHHHHHHHhC----------CcEEEEcCCCCcchHHHHHHHHHHhcC-CCHHHHH
Q 017789 101 KLVRMTVPI-RDMESENLLDYLDVCFDFIDRRRKE----------GGVLVHCFAGVSRSAAIITAYLMRTEQ-LSSEGAL 168 (366)
Q Consensus 101 ~i~~l~ipi-~D~~~~~l~~~~~~~~~fI~~~~~~----------g~VLVHC~aG~sRS~tvv~AYLm~~~~-~s~~eAl 168 (366)
.+.++|+.- +|...++-...+...++.|+...+. +.++|||.+|++||++++++|+|...+ .++++.+
T Consensus 422 tV~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV 501 (535)
T PRK15375 422 TIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVR 501 (535)
T ss_pred EEEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHH
Confidence 355555544 4544333333344445555543221 235799999999999999999997544 7999999
Q ss_pred HHHHhhCCC-CCCChhHHHHHHHHHHc
Q 017789 169 ESLRQSCES-VCPNDGFLEQLKMFEEM 194 (366)
Q Consensus 169 ~~v~~~Rp~-i~pn~~f~~qL~~~e~~ 194 (366)
..+|..|+. .--++.++..|...+..
T Consensus 502 ~dlR~qRng~MVQt~eQy~~l~~~~~~ 528 (535)
T PRK15375 502 ADFRNSRNNRMLEDASQFVQLKAMQAQ 528 (535)
T ss_pred HHHHhcCCccccccHHHHHHHHHHHHH
Confidence 999999997 66788888888776653
No 27
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.16 E-value=6.7e-06 Score=83.05 Aligned_cols=90 Identities=22% Similarity=0.223 Sum_probs=72.3
Q ss_pred EEEecCCCCCccHHHHHHHHHHHHHHHHhC---CcEEEEcCCCCcchHHHHHHHHHHhcCCC-HHHHHHHHHhhC---C-
Q 017789 105 MTVPIRDMESENLLDYLDVCFDFIDRRRKE---GGVLVHCFAGVSRSAAIITAYLMRTEQLS-SEGALESLRQSC---E- 176 (366)
Q Consensus 105 l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~---g~VLVHC~aG~sRS~tvv~AYLm~~~~~s-~~eAl~~v~~~R---p- 176 (366)
..++.+|...+.|.. +..+++-++..+.. +.|.|||.+|.+||+++++||||+..-.. +++|+.+.-.+| .
T Consensus 76 ~~~~~~Dh~~P~L~~-l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~ 154 (434)
T KOG2283|consen 76 ARFGFDDHNPPPLEL-LCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGK 154 (434)
T ss_pred eecCCCCCCCCcHHH-HHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccc
Confidence 347788877666544 66778888888875 36899999999999999999999987655 999999999988 3
Q ss_pred -CCCCChhHHHHHHHHHHcC
Q 017789 177 -SVCPNDGFLEQLKMFEEMG 195 (366)
Q Consensus 177 -~i~pn~~f~~qL~~~e~~~ 195 (366)
...--+.+.+.+.-|+.++
T Consensus 155 ~~~~~~PSq~RYv~Y~~~~l 174 (434)
T KOG2283|consen 155 SKGVTIPSQRRYVGYFSRVL 174 (434)
T ss_pred cCCccCchhhHHHHHHHHHh
Confidence 2355678899999998863
No 28
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.10 E-value=1.7e-05 Score=72.83 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=52.7
Q ss_pred HHHHHHHHHH--hCCcEEEEcCCCCcchHHHHHHHHHHh-----cCCCHHHHHHHHHhhCCCCCCChhHHHHHH
Q 017789 123 VCFDFIDRRR--KEGGVLVHCFAGVSRSAAIITAYLMRT-----EQLSSEGALESLRQSCESVCPNDGFLEQLK 189 (366)
Q Consensus 123 ~~~~fI~~~~--~~g~VLVHC~aG~sRS~tvv~AYLm~~-----~~~s~~eAl~~v~~~Rp~i~pn~~f~~qL~ 189 (366)
..++.+.... ..++|+|||.+|.+||++++++.+|.. ...++.+++..+|+.|+.+-.+..+...+.
T Consensus 157 ~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~ 230 (235)
T PF00102_consen 157 DFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFCY 230 (235)
T ss_dssp HHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHHH
T ss_pred hhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHHH
Confidence 4444444444 345999999999999999998887653 248999999999999999999987766554
No 29
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.05 E-value=3.2e-05 Score=75.07 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=41.1
Q ss_pred CcEEEEcCCCCcchHHHHHHHHHH-----hcCCCHHHHHHHHHhhCCCCCCChhHH
Q 017789 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFL 185 (366)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~-----~~~~s~~eAl~~v~~~Rp~i~pn~~f~ 185 (366)
++|+|||.+|+|||+++++...+. ....++.+++..+|+.|+..-.+..+.
T Consensus 230 ~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY 285 (303)
T PHA02742 230 PPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQY 285 (303)
T ss_pred CCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHH
Confidence 699999999999999988766443 224788899999999999877766544
No 30
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.01 E-value=4.1e-05 Score=77.85 Aligned_cols=89 Identities=21% Similarity=0.261 Sum_probs=74.0
Q ss_pred EEEEEecCC--CCCccHHHHHHHHHHHHHHHHhC--C-cEEEEcCCCCcchHHHHHHHHHHhcCC---------------
Q 017789 103 VRMTVPIRD--MESENLLDYLDVCFDFIDRRRKE--G-GVLVHCFAGVSRSAAIITAYLMRTEQL--------------- 162 (366)
Q Consensus 103 ~~l~ipi~D--~~~~~l~~~~~~~~~fI~~~~~~--g-~VLVHC~aG~sRS~tvv~AYLm~~~~~--------------- 162 (366)
.++++++.. ...-+|...|++++.|+...+.+ + +|||+|..|...|+.|++|.|+..+..
T Consensus 340 ~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK 419 (451)
T PF04179_consen 340 KYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITK 419 (451)
T ss_pred eEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCH
Confidence 345556553 45567889999999999999887 6 899999999999999999999987652
Q ss_pred -CHHHHHHHHHhhCCCCCCChhHHHHHHHH
Q 017789 163 -SSEGALESLRQSCESVCPNDGFLEQLKMF 191 (366)
Q Consensus 163 -s~~eAl~~v~~~Rp~i~pn~~f~~qL~~~ 191 (366)
....-|..|.+.+|.++|+++.++++..|
T Consensus 420 ~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 420 DDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 34557888889999999999999998776
No 31
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=97.94 E-value=6e-05 Score=73.48 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=44.3
Q ss_pred CcEEEEcCCCCcchHHHHHHHHHH-----hcCCCHHHHHHHHHhhCCCCCCChhHHHHH
Q 017789 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFLEQL 188 (366)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~-----~~~~s~~eAl~~v~~~Rp~i~pn~~f~~qL 188 (366)
|+|+|||.+|+|||+++++.-++. ....++.+++..+|+.|+..-.+..+..-+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 689999999999999988776433 345899999999999999888887655544
No 32
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.94 E-value=1.8e-05 Score=68.98 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=44.2
Q ss_pred cCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEcCCCCcchHHHHHHHHHH
Q 017789 97 GKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMR 158 (366)
Q Consensus 97 ~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AYLm~ 158 (366)
....++.|.+||+.|.. .+..+.|++.++|+...-+...+.+||.+|.||+.+..+.|.|.
T Consensus 88 ~~~~g~~Y~Ripitd~~-~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 88 VEGNGLRYYRIPITDHQ-APDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHHTT-EEEEEEE-TTS----HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HhcCCceEEEEeCCCcC-CCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999965 45567799999999988333489999999999998877777664
No 33
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=97.91 E-value=5.7e-05 Score=69.59 Aligned_cols=117 Identities=11% Similarity=0.205 Sum_probs=80.2
Q ss_pred cccCCeEEcCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 017789 4 LVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSC 83 (366)
Q Consensus 4 ~I~~~LylG~~~~a~d~~~L~~~gIt~Vlnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (366)
-|.++||-++++...+..+|+.++.+.||.|+.+.
T Consensus 62 ~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~--------------------------------------------- 96 (249)
T KOG1572|consen 62 MVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEP--------------------------------------------- 96 (249)
T ss_pred ccccceeecCCCCccchHHHHHhhhheEEEecCCC---------------------------------------------
Confidence 46789999999999999999999999999997632
Q ss_pred CCCcchhhhhhhccCCcceEEEEEecCCCC------CccHH-HHHHHHHHHHHHHHh-CC-cEEEEcCCCCcchHHHHHH
Q 017789 84 LSPTKLLYSLEYAGKDLKLVRMTVPIRDME------SENLL-DYLDVCFDFIDRRRK-EG-GVLVHCFAGVSRSAAIITA 154 (366)
Q Consensus 84 ~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~------~~~l~-~~~~~~~~fI~~~~~-~g-~VLVHC~aG~sRS~tvv~A 154 (366)
.+.+...| -...+|.+.+|-+.... ..++. +.+..+++++ +. .+ ++||||..|..|+++|+.+
T Consensus 97 yp~~nl~f-----~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~l---ld~~N~P~Lihc~rGkhRtg~lVgc 168 (249)
T KOG1572|consen 97 YPEENLNF-----LESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVL---LDKRNYPILIHCKRGKHRTGCLVGC 168 (249)
T ss_pred CChHHHHH-----HHhcCceEEEEecccccccccCCCCCChHHHHHHHHHHH---hcccCCceEEecCCCCcchhhhHHH
Confidence 11112222 12234556666665433 23333 3345555552 33 34 9999999999999888876
Q ss_pred HHHHhcCCCHHHHHHHHHhh
Q 017789 155 YLMRTEQLSSEGALESLRQS 174 (366)
Q Consensus 155 YLm~~~~~s~~eAl~~v~~~ 174 (366)
.- +.++|++.-.+...+..
T Consensus 169 lR-klq~W~lssil~Ey~~f 187 (249)
T KOG1572|consen 169 LR-KLQNWSLSSILDEYLRF 187 (249)
T ss_pred HH-HHhccchhHHHHHHHHh
Confidence 55 77889998887766543
No 34
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=97.89 E-value=9e-05 Score=71.79 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=41.6
Q ss_pred CcEEEEcCCCCcchHHHHHHHHHH-----hcCCCHHHHHHHHHhhCCCCCCChhHH
Q 017789 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFL 185 (366)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~-----~~~~s~~eAl~~v~~~Rp~i~pn~~f~ 185 (366)
|+|+|||.+|+|||+++++...+. ....++.+++..+|+.|+..-.+..+.
T Consensus 222 ~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY 277 (298)
T PHA02740 222 APIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDY 277 (298)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHHH
Confidence 589999999999999988766443 334799999999999999877776544
No 35
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=97.89 E-value=8.7e-05 Score=72.71 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=42.7
Q ss_pred CcEEEEcCCCCcchHHHHHHHHHH-----hcCCCHHHHHHHHHhhCCCCCCChhHHHH
Q 017789 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFLEQ 187 (366)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~-----~~~~s~~eAl~~v~~~Rp~i~pn~~f~~q 187 (366)
|+|+|||.+|+|||+++++...+. ....++.+++..+|..|+..-.+..+..-
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F 305 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAF 305 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHH
Confidence 689999999999999988765432 23589999999999999988777655433
No 36
>PHA02738 hypothetical protein; Provisional
Probab=97.72 E-value=0.00024 Score=69.47 Aligned_cols=53 Identities=17% Similarity=0.133 Sum_probs=42.0
Q ss_pred CcEEEEcCCCCcchHHHHHHHH-HH----hcCCCHHHHHHHHHhhCCCCCCChhHHHH
Q 017789 135 GGVLVHCFAGVSRSAAIITAYL-MR----TEQLSSEGALESLRQSCESVCPNDGFLEQ 187 (366)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYL-m~----~~~~s~~eAl~~v~~~Rp~i~pn~~f~~q 187 (366)
++|+|||.+|+|||+++++.-. |. ....++.+++..+|+.|+..-.+..+..-
T Consensus 228 ~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F 285 (320)
T PHA02738 228 PPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFF 285 (320)
T ss_pred CCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHH
Confidence 5899999999999999775553 22 23479999999999999988777765543
No 37
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.60 E-value=0.00032 Score=66.20 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=44.1
Q ss_pred CCcEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCChhHHHHHHHH
Q 017789 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMF 191 (366)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~v~~~Rp~i~pn~~f~~qL~~~ 191 (366)
+++||+||.+|..|++.+++.|++...++.-..+-+++..-++......+-..+....
T Consensus 136 ~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~~~~~~~~~~ 193 (249)
T COG2365 136 NGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERRGILEYVSEK 193 (249)
T ss_pred cCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhHHHHHHHhhc
Confidence 3799999999999999999999998877777788888887777555555333443333
No 38
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.58 E-value=0.00023 Score=70.67 Aligned_cols=75 Identities=21% Similarity=0.328 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhCC-cEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCChhHHHHHHHHHHcCC
Q 017789 122 DVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGF 196 (366)
Q Consensus 122 ~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~v~~~Rp~i~pn~~f~~qL~~~e~~~~ 196 (366)
..+-.|++.....+ =|+|||.+|.+|++-++++|||...+++..+|++.+...||...--...+..|...+.--+
T Consensus 111 ~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~~ 186 (393)
T KOG2386|consen 111 KLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDIF 186 (393)
T ss_pred HHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhcccccc
Confidence 34445665555566 6999999999999999999999999999999999999999877777777777777666443
No 39
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.38 E-value=0.00071 Score=73.52 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=55.8
Q ss_pred ecCCCCCccHHHHHHHHHHHHHHHHhC-C-cEEEEcCCCCcchHHHHHHH----HHHh-cCCCHHHHHHHHHhhCCCCCC
Q 017789 108 PIRDMESENLLDYLDVCFDFIDRRRKE-G-GVLVHCFAGVSRSAAIITAY----LMRT-EQLSSEGALESLRQSCESVCP 180 (366)
Q Consensus 108 pi~D~~~~~l~~~~~~~~~fI~~~~~~-g-~VLVHC~aG~sRS~tvv~AY----Lm~~-~~~s~~eAl~~v~~~Rp~i~p 180 (366)
...|...++-.++|-.-++.|+..+.. + +|+|||.||+|||++++++= |+.. ..+.+-+.++.+|..|-.+-+
T Consensus 1035 aWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQ 1114 (1144)
T KOG0792|consen 1035 AWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQ 1114 (1144)
T ss_pred ccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcc
Confidence 344555555566665556666666655 6 89999999999998877543 3332 357888899999999987777
Q ss_pred ChhHHH
Q 017789 181 NDGFLE 186 (366)
Q Consensus 181 n~~f~~ 186 (366)
+..+..
T Consensus 1115 T~~QYk 1120 (1144)
T KOG0792|consen 1115 TLSQYK 1120 (1144)
T ss_pred chHHhh
Confidence 766543
No 40
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=97.31 E-value=0.00043 Score=68.89 Aligned_cols=70 Identities=17% Similarity=0.393 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEcCCCCcchHHHH-HHHHHH---hcC----CCHHHHHHHHHhhCCCCCCChhHHH
Q 017789 117 LLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAII-TAYLMR---TEQ----LSSEGALESLRQSCESVCPNDGFLE 186 (366)
Q Consensus 117 l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv-~AYLm~---~~~----~s~~eAl~~v~~~Rp~i~pn~~f~~ 186 (366)
.+.+++++..-=+...+.|+|.|||.||++|++|++ +-.||. ..| +++...+++||+.|...--.+.+.+
T Consensus 434 vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYk 511 (600)
T KOG0790|consen 434 VLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYK 511 (600)
T ss_pred HHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHH
Confidence 344444433332222345899999999999999954 555554 334 7899999999999986655544443
No 41
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.15 E-value=0.001 Score=62.35 Aligned_cols=57 Identities=25% Similarity=0.420 Sum_probs=36.5
Q ss_pred CcceEEEEEec-CCCCCccHHHHHHHHHHHHHHHH----hCCcEEEEcCCCCcchHHHHHH-HHHHh
Q 017789 99 DLKLVRMTVPI-RDMESENLLDYLDVCFDFIDRRR----KEGGVLVHCFAGVSRSAAIITA-YLMRT 159 (366)
Q Consensus 99 ~~~i~~l~ipi-~D~~~~~l~~~~~~~~~fI~~~~----~~g~VLVHC~aG~sRS~tvv~A-YLm~~ 159 (366)
...+.|++++- .|...+++.+ ..++++... ..|+++|||.||+||++|+++. .||+.
T Consensus 182 ~k~Ihhf~y~nW~D~~~p~i~s----l~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~ 244 (302)
T COG5599 182 PKKIHHFQYINWVDFNVPDIRS----LTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRM 244 (302)
T ss_pred ccEEEEEEecCccccCCcCHHH----HHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhc
Confidence 33455555554 4666665544 345555544 3459999999999999996644 45554
No 42
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.62 E-value=0.0076 Score=60.45 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=38.9
Q ss_pred CCcEEEEcCCCCcchHHHHHHH-HHHh--c---CCCHHHHHHHHHhhCCCCCCChhHH
Q 017789 134 EGGVLVHCFAGVSRSAAIITAY-LMRT--E---QLSSEGALESLRQSCESVCPNDGFL 185 (366)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AY-Lm~~--~---~~s~~eAl~~v~~~Rp~i~pn~~f~ 185 (366)
.+++.|||.+|+||++|+++.- .|.. . ..+..+.+..+|..|+.+..+..+.
T Consensus 299 ~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy 356 (415)
T KOG0789|consen 299 QEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQY 356 (415)
T ss_pred CCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHH
Confidence 3699999999999999988644 2222 1 2458888888999988777665554
No 43
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=96.40 E-value=0.011 Score=57.82 Aligned_cols=56 Identities=25% Similarity=0.380 Sum_probs=39.4
Q ss_pred CCcEEEEcCCCCcchHHHHHHH-HHHhcC----CCHHHHHHHHHhhCCCCCCChhHHHHHH
Q 017789 134 EGGVLVHCFAGVSRSAAIITAY-LMRTEQ----LSSEGALESLRQSCESVCPNDGFLEQLK 189 (366)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AY-Lm~~~~----~s~~eAl~~v~~~Rp~i~pn~~f~~qL~ 189 (366)
.++++|||.||++|++|.++.- |++..+ .+.-..+..+|..|+..-+|..+.-.|.
T Consensus 287 ~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~mVqte~Qyvfl~ 347 (374)
T KOG0791|consen 287 KGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLMVQTEDQYVFLH 347 (374)
T ss_pred CCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccccccchHHHHHHHH
Confidence 3499999999999999976544 555433 3445566666788888888866555443
No 44
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=93.92 E-value=0.18 Score=43.46 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=39.6
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhC----CcEEEEcCCCCcc----hHHHHHHHHHHhcCCCHHHHHHHHHhhCC
Q 017789 110 RDMESENLLDYLDVCFDFIDRRRKE----GGVLVHCFAGVSR----SAAIITAYLMRTEQLSSEGALESLRQSCE 176 (366)
Q Consensus 110 ~D~~~~~l~~~~~~~~~fI~~~~~~----g~VLVHC~aG~sR----S~tvv~AYLm~~~~~s~~eAl~~v~~~Rp 176 (366)
.|.+.-+|.... .-..-+++.++. ++.+||+...-.+ ++.++.||+|...+|++++|++-+...-|
T Consensus 39 ~DFGPlnL~~ly-rfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 39 ADFGPLNLAQLY-RFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp S------HHHHH-HHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred CcCCCccHHHHH-HHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 566666665533 444445666654 6899999887554 37788999999999999999999987654
No 45
>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes. The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.
Probab=93.15 E-value=0.059 Score=43.11 Aligned_cols=19 Identities=26% Similarity=0.828 Sum_probs=18.1
Q ss_pred ccccccccceecccccccc
Q 017789 255 AYRCKKCRRVVALQENVVD 273 (366)
Q Consensus 255 ~~rCrkCR~~l~~~~~i~~ 273 (366)
.|.|++|+..|+.+.+++.
T Consensus 2 vf~C~~C~t~l~ds~~lvs 20 (96)
T PF03226_consen 2 VFQCKNCKTILADSNELVS 20 (96)
T ss_pred EEECCCCCCCcCCHHHhee
Confidence 6899999999999999998
No 46
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=93.00 E-value=0.24 Score=52.45 Aligned_cols=44 Identities=23% Similarity=0.487 Sum_probs=33.3
Q ss_pred cEEEEcCCCCcchHHHHHH-HHHHh-----cCCCHHHHHHHHHhhCCCCC
Q 017789 136 GVLVHCFAGVSRSAAIITA-YLMRT-----EQLSSEGALESLRQSCESVC 179 (366)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~A-YLm~~-----~~~s~~eAl~~v~~~Rp~i~ 179 (366)
+|+|||..|-+|+++-++- .++.+ ..++....++++|..||.+-
T Consensus 929 pIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmV 978 (1004)
T KOG0793|consen 929 PIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMV 978 (1004)
T ss_pred ceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcce
Confidence 8999999999999884432 22222 23788889999999999643
No 47
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=92.04 E-value=0.24 Score=54.87 Aligned_cols=59 Identities=25% Similarity=0.448 Sum_probs=39.8
Q ss_pred HHHHHHHHHH-----hCCcEEEEcCCCCcchHHHHH-----HHHHHhcCCCHHHHHHHHHhhCCCCCCC
Q 017789 123 VCFDFIDRRR-----KEGGVLVHCFAGVSRSAAIIT-----AYLMRTEQLSSEGALESLRQSCESVCPN 181 (366)
Q Consensus 123 ~~~~fI~~~~-----~~g~VLVHC~aG~sRS~tvv~-----AYLm~~~~~s~~eAl~~v~~~Rp~i~pn 181 (366)
..+.|++... ..|+++|||.||+|||++.++ ..++.....+.-+-+..+|..|...--.
T Consensus 714 ~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt 782 (1087)
T KOG4228|consen 714 GLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQT 782 (1087)
T ss_pred HHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhcccccccc
Confidence 4566776654 358999999999999998542 2233334466667777777777754433
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.12 E-value=0.39 Score=50.05 Aligned_cols=35 Identities=34% Similarity=0.575 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCC-cEEEEcCCCCcchHHHH-HHHHHH
Q 017789 124 CFDFIDRRRKEG-GVLVHCFAGVSRSAAII-TAYLMR 158 (366)
Q Consensus 124 ~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv-~AYLm~ 158 (366)
|+...+..-.++ .|||||.-|..|++-++ +|-||.
T Consensus 363 a~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 363 AVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred HHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHh
Confidence 333333333445 89999999999998866 666665
No 49
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=90.15 E-value=0.52 Score=52.42 Aligned_cols=47 Identities=21% Similarity=0.457 Sum_probs=36.0
Q ss_pred hCCcEEEEcCCCCcchHHHHHHHHHHh----cC-CCHHHHHHHHHhhCCCCC
Q 017789 133 KEGGVLVHCFAGVSRSAAIITAYLMRT----EQ-LSSEGALESLRQSCESVC 179 (366)
Q Consensus 133 ~~g~VLVHC~aG~sRS~tvv~AYLm~~----~~-~s~~eAl~~v~~~Rp~i~ 179 (366)
..+++.|||..|.+||++.+++-++.. .+ ++.-.+++.++..||..-
T Consensus 1017 ~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv 1068 (1087)
T KOG4228|consen 1017 ADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMV 1068 (1087)
T ss_pred CCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCcccc
Confidence 357999999999999999776654432 22 677788888888888543
No 50
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=82.43 E-value=3.3 Score=43.39 Aligned_cols=34 Identities=35% Similarity=0.491 Sum_probs=23.6
Q ss_pred HHHHHHHh-CC-cEEEEcCCCCcchHHHH-HHHHHHh
Q 017789 126 DFIDRRRK-EG-GVLVHCFAGVSRSAAII-TAYLMRT 159 (366)
Q Consensus 126 ~fI~~~~~-~g-~VLVHC~aG~sRS~tvv-~AYLm~~ 159 (366)
.+|-+++. +| .|||||.-|..|+.-|+ +|=||..
T Consensus 334 ~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllLD 370 (573)
T KOG1089|consen 334 AEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLLD 370 (573)
T ss_pred HHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHhC
Confidence 34555555 56 89999999999996655 4445543
No 51
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=77.28 E-value=5.1 Score=39.86 Aligned_cols=20 Identities=45% Similarity=0.815 Sum_probs=15.8
Q ss_pred hCC-cEEEEcCCCCcchHHHH
Q 017789 133 KEG-GVLVHCFAGVSRSAAII 152 (366)
Q Consensus 133 ~~g-~VLVHC~aG~sRS~tvv 152 (366)
.+| .|||||..|..|++-|+
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~ 249 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLS 249 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHH
Confidence 466 89999999999985544
No 52
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=74.18 E-value=1.9 Score=36.34 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=26.9
Q ss_pred ccceEeCCCCCCCcceeeeccccCC-CCCccccceee
Q 017789 321 LEGKLSCAHCEARLGYFNWSGIQCS-CGSWITPAFQL 356 (366)
Q Consensus 321 ~~Gkl~Cp~C~~klG~~~w~G~~Cs-CG~~v~Pa~~l 356 (366)
+--|-.||+|++|.=-.|=.=..|+ ||+-+.|+..+
T Consensus 6 lGtKr~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~~~~ 42 (129)
T TIGR02300 6 LGTKRICPNTGSKFYDLNRRPAVSPYTGEQFPPEEAL 42 (129)
T ss_pred hCccccCCCcCccccccCCCCccCCCcCCccCcchhh
Confidence 4458899999999755554557897 99988887443
No 53
>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....
Probab=74.16 E-value=3.2 Score=35.02 Aligned_cols=66 Identities=26% Similarity=0.531 Sum_probs=37.6
Q ss_pred CCcccccccccceeccccccccCCCCCCCchhhhhhcccCCCCCCCCCCCCceeeeecccc--chhhh---cccccceEe
Q 017789 252 RTPAYRCKKCRRVVALQENVVDHIPGEGETAFEWHKRKSGNRFNRSDESECSSIFVEPLRW--MTAVE---EGALEGKLS 326 (366)
Q Consensus 252 ~~~~~rCrkCR~~l~~~~~i~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~fiep~~W--m~~~~---~~~~~Gkl~ 326 (366)
....|.|+.|...||.++.=... +.| | -=|-+|+.. +.... -|...--+.
T Consensus 34 ~~G~Y~C~~Cg~pLF~S~~Kf~S--g~G-----W------------------PSF~~~i~~~~v~~~~D~s~g~~R~Ev~ 88 (124)
T PF01641_consen 34 EEGIYVCAVCGTPLFSSDTKFDS--GCG-----W------------------PSFWQPIPGDAVKEREDFSHGMVRTEVR 88 (124)
T ss_dssp SSEEEEETTTS-EEEEGGGEETS--SSS-----S------------------SEESSCSSTTSEEEEEEECTSSEEEEEE
T ss_pred CCEEEEcCCCCCccccCcccccC--CcC-----C------------------ccccCcCChHHEEEeccccCCceEEEEE
Confidence 45799999999999998742211 111 1 013344432 11111 123344589
Q ss_pred CCCCCCCcceeeeccc
Q 017789 327 CAHCEARLGYFNWSGI 342 (366)
Q Consensus 327 Cp~C~~klG~~~w~G~ 342 (366)
|.+|++.||.-=-.|.
T Consensus 89 C~~Cg~HLGHVF~DGp 104 (124)
T PF01641_consen 89 CARCGSHLGHVFDDGP 104 (124)
T ss_dssp ETTTCCEEEEEESTSS
T ss_pred ecCCCCccccEeCCCC
Confidence 9999999997544553
No 54
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=69.51 E-value=19 Score=28.20 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=17.4
Q ss_pred CcEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 017789 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (366)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (366)
.+|+|+|..| .||... +.+| ...|.+
T Consensus 62 ~~ivvyC~~G-~rs~~a-~~~L-~~~G~~ 87 (101)
T cd01518 62 KKVLMYCTGG-IRCEKA-SAYL-KERGFK 87 (101)
T ss_pred CEEEEECCCc-hhHHHH-HHHH-HHhCCc
Confidence 3899999998 688543 3344 555653
No 55
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=69.22 E-value=3 Score=25.26 Aligned_cols=21 Identities=33% Similarity=0.710 Sum_probs=14.6
Q ss_pred eCCCCCCCcceeeeccccCC-CCCc
Q 017789 326 SCAHCEARLGYFNWSGIQCS-CGSW 349 (366)
Q Consensus 326 ~Cp~C~~klG~~~w~G~~Cs-CG~~ 349 (366)
.||.|++.+ .-+-..|+ ||.-
T Consensus 2 ~CP~C~~~V---~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 2 TCPECGAEV---PESAKFCPHCGYD 23 (26)
T ss_pred cCCCCcCCc---hhhcCcCCCCCCC
Confidence 489999877 22345787 8863
No 56
>smart00714 LITAF Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
Probab=69.14 E-value=2.3 Score=31.56 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=15.8
Q ss_pred cccceEeCCCCCCCcceee
Q 017789 320 ALEGKLSCAHCEARLGYFN 338 (366)
Q Consensus 320 ~~~Gkl~Cp~C~~klG~~~ 338 (366)
-.+-.-+||+|+++||.|+
T Consensus 48 ~kd~~H~Cp~C~~~lg~~~ 66 (67)
T smart00714 48 FKDVNHYCPNCGAFLGTYN 66 (67)
T ss_pred ccCccEECCCCCCEeEEec
Confidence 3456689999999999985
No 57
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=69.08 E-value=2.8 Score=34.49 Aligned_cols=33 Identities=33% Similarity=0.675 Sum_probs=24.7
Q ss_pred ccceEeCCCCCCCcceeeeccccCC-CCCccccc
Q 017789 321 LEGKLSCAHCEARLGYFNWSGIQCS-CGSWITPA 353 (366)
Q Consensus 321 ~~Gkl~Cp~C~~klG~~~w~G~~Cs-CG~~v~Pa 353 (366)
+--|-.||+|++|-=-.|=.=..|+ ||+-+.|.
T Consensus 6 lGtKR~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 6 LGTKRTCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cCCcccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 4458899999999644444446797 99988777
No 58
>PRK01415 hypothetical protein; Validated
Probab=66.37 E-value=9.6 Score=36.01 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 017789 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (366)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (366)
+.+|+++|..| .|| ..++++|. ..|..
T Consensus 171 ~k~Iv~yCtgG-iRs-~kAa~~L~-~~Gf~ 197 (247)
T PRK01415 171 GKKIAMVCTGG-IRC-EKSTSLLK-SIGYD 197 (247)
T ss_pred CCeEEEECCCC-hHH-HHHHHHHH-HcCCC
Confidence 34899999999 487 45556664 44543
No 59
>PRK05508 methionine sulfoxide reductase B; Provisional
Probab=65.34 E-value=7.1 Score=32.64 Aligned_cols=19 Identities=26% Similarity=0.579 Sum_probs=16.6
Q ss_pred CCcccccccccceeccccc
Q 017789 252 RTPAYRCKKCRRVVALQEN 270 (366)
Q Consensus 252 ~~~~~rCrkCR~~l~~~~~ 270 (366)
....|.|+-|...||.++.
T Consensus 30 ~~G~Y~C~~Cg~pLF~S~~ 48 (119)
T PRK05508 30 EKGTYVCKQCGAPLYRSED 48 (119)
T ss_pred CCeEEEecCCCCccccccc
Confidence 4569999999999999875
No 60
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=64.28 E-value=4.5 Score=26.97 Aligned_cols=25 Identities=28% Similarity=0.926 Sum_probs=18.0
Q ss_pred eCCCCCCCcceeeeccc---cCC-CC-Ccc
Q 017789 326 SCAHCEARLGYFNWSGI---QCS-CG-SWI 350 (366)
Q Consensus 326 ~Cp~C~~klG~~~w~G~---~Cs-CG-~~v 350 (366)
.||+|+..|-.....+. .|. || .|+
T Consensus 1 ~CP~C~~~l~~~~~~~~~id~C~~C~G~W~ 30 (41)
T PF13453_consen 1 KCPRCGTELEPVRLGDVEIDVCPSCGGIWF 30 (41)
T ss_pred CcCCCCcccceEEECCEEEEECCCCCeEEc
Confidence 48999999888888763 564 65 444
No 61
>PRK00222 methionine sulfoxide reductase B; Provisional
Probab=63.81 E-value=7.6 Score=33.52 Aligned_cols=65 Identities=22% Similarity=0.482 Sum_probs=37.8
Q ss_pred CCcccccccccceeccccccccCCCCCCCchhhhhhcccCCCCCCCCCCCCceeeeeccccc--hhhhc---ccccceEe
Q 017789 252 RTPAYRCKKCRRVVALQENVVDHIPGEGETAFEWHKRKSGNRFNRSDESECSSIFVEPLRWM--TAVEE---GALEGKLS 326 (366)
Q Consensus 252 ~~~~~rCrkCR~~l~~~~~i~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~fiep~~Wm--~~~~~---~~~~Gkl~ 326 (366)
....|.|+.|...||.+.+=-... . -| -=|-+|+..- ....+ |...-.+.
T Consensus 40 ~~G~Y~C~~Cg~pLF~S~~Kf~Sg--~-----GW------------------PSF~~~i~~~~V~~~~D~s~gm~RtEv~ 94 (142)
T PRK00222 40 EKGIYVCIVCGEPLFSSDTKFDSG--C-----GW------------------PSFTKPIDEEAIRELRDTSHGMVRTEVR 94 (142)
T ss_pred CCeEEEecCCCchhcCCcccccCC--C-----CC------------------cCcCcccCCCceEEeeccCCCceEEEEE
Confidence 456999999999999986422111 0 11 0144444321 11111 22334599
Q ss_pred CCCCCCCcceeeecc
Q 017789 327 CAHCEARLGYFNWSG 341 (366)
Q Consensus 327 Cp~C~~klG~~~w~G 341 (366)
|-+|++.||.-=-.|
T Consensus 95 C~~Cg~HLGHVF~DG 109 (142)
T PRK00222 95 CANCDSHLGHVFPDG 109 (142)
T ss_pred eCCCCCccCcccCCC
Confidence 999999999843356
No 62
>PF12773 DZR: Double zinc ribbon
Probab=63.16 E-value=3.8 Score=28.34 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=20.5
Q ss_pred cceEeCCCCCCCcceeeeccccCC-CCCccccc
Q 017789 322 EGKLSCAHCEARLGYFNWSGIQCS-CGSWITPA 353 (366)
Q Consensus 322 ~Gkl~Cp~C~~klG~~~w~G~~Cs-CG~~v~Pa 353 (366)
.+-.+||+|+++|....=.-..|+ ||+-+.+.
T Consensus 10 ~~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~ 42 (50)
T PF12773_consen 10 DDAKFCPHCGTPLPPPDQSKKICPNCGAENPPN 42 (50)
T ss_pred ccccCChhhcCChhhccCCCCCCcCCcCCCcCC
Confidence 445778888888883333335684 88766543
No 63
>PF11648 RIG-I_C-RD: C-terminal domain of RIG-I; InterPro: IPR021673 This family of proteins represents the regulatory domain RD of RIG-I, a protein which initiates a signalling cascade that provides essential antiviral protection for the host. The RD domain binds viral RNA, activating the RIG-I ATPase by RNA-dependent dimerisation. The structure of RD contains a zinc-binding domain and is thought to confer ligand specificity []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2RQB_A 3GA3_A 2W4R_D 3EQT_A 2RQA_A 2RMJ_A 3NCU_A 2QFD_C 2QFB_D 3TMI_A ....
Probab=62.78 E-value=4.8 Score=33.83 Aligned_cols=26 Identities=27% Similarity=0.822 Sum_probs=20.0
Q ss_pred ccceEeCCCCCCCcceee-eccccCCC
Q 017789 321 LEGKLSCAHCEARLGYFN-WSGIQCSC 346 (366)
Q Consensus 321 ~~Gkl~Cp~C~~klG~~~-w~G~~CsC 346 (366)
..|+|.|-+|+..+|..- +.|...+|
T Consensus 57 ~~~~I~C~~C~~~wG~~m~yk~~~LP~ 83 (123)
T PF11648_consen 57 PNGKIHCKNCGQDWGIMMKYKGVELPC 83 (123)
T ss_dssp EEEEEEETSTSBEEEEEEEETTEEEEE
T ss_pred eCCEEEcCCCChHhhhheEECCccccE
Confidence 579999999999999765 55655443
No 64
>PF10601 zf-LITAF-like: LITAF-like zinc ribbon domain; InterPro: IPR006629 Members of this family display a conserved zinc ribbon structure [] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [].
Probab=61.04 E-value=4.3 Score=30.62 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=14.4
Q ss_pred cceEeCCCCCCCcceee
Q 017789 322 EGKLSCAHCEARLGYFN 338 (366)
Q Consensus 322 ~Gkl~Cp~C~~klG~~~ 338 (366)
+-.-+||+|++.||.|.
T Consensus 56 d~~H~Cp~C~~~lg~~~ 72 (73)
T PF10601_consen 56 DVYHYCPNCGAFLGTYK 72 (73)
T ss_pred CceEECCCCCCEeEEEe
Confidence 44589999999999885
No 65
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=61.01 E-value=4.3 Score=26.53 Aligned_cols=23 Identities=35% Similarity=0.891 Sum_probs=15.7
Q ss_pred EeCCCCCCCcceeee-cc-ccC-CCCCc
Q 017789 325 LSCAHCEARLGYFNW-SG-IQC-SCGSW 349 (366)
Q Consensus 325 l~Cp~C~~klG~~~w-~G-~~C-sCG~~ 349 (366)
..|+.|+++ .|.. .| .-| +||+-
T Consensus 9 ~~C~~C~~~--~~~~~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 9 EPCPVCGSR--WFYSDDGFYYCDRCGHQ 34 (36)
T ss_pred CcCCCCCCe--EeEccCCEEEhhhCceE
Confidence 458889888 4444 36 478 88864
No 66
>smart00400 ZnF_CHCC zinc finger.
Probab=58.68 E-value=12 Score=26.53 Aligned_cols=32 Identities=28% Similarity=0.622 Sum_probs=24.6
Q ss_pred EEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHH
Q 017789 138 LVHCFAGVSRSAAIITAYLMRTEQLSSEGALESL 171 (366)
Q Consensus 138 LVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~v 171 (366)
..||.+ .++++.+ +.++|+.+++++.||++.+
T Consensus 23 ~~~Cf~-cg~gGd~-i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGNV-ISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCCH-HHHHHHHHCcCHHHHHHHh
Confidence 478875 3566544 6888888999999999875
No 67
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=57.12 E-value=6.6 Score=27.62 Aligned_cols=21 Identities=33% Similarity=0.756 Sum_probs=18.5
Q ss_pred ccceEeCCCCCCCcceeeecc
Q 017789 321 LEGKLSCAHCEARLGYFNWSG 341 (366)
Q Consensus 321 ~~Gkl~Cp~C~~klG~~~w~G 341 (366)
+.|+|.|+.|+.++-...|.|
T Consensus 2 l~g~l~C~~CG~~m~~~~~~~ 22 (58)
T PF13408_consen 2 LSGLLRCGHCGSKMTRRKRKG 22 (58)
T ss_pred CCCcEEcccCCcEeEEEECCC
Confidence 478999999999999988865
No 68
>TIGR00357 methionine-R-sulfoxide reductase. This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.
Probab=56.27 E-value=12 Score=32.10 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=16.5
Q ss_pred CCcccccccccceeccccc
Q 017789 252 RTPAYRCKKCRRVVALQEN 270 (366)
Q Consensus 252 ~~~~~rCrkCR~~l~~~~~ 270 (366)
....|.|+.|...||.+++
T Consensus 37 ~~G~Y~C~~Cg~pLF~S~~ 55 (134)
T TIGR00357 37 EEGIYVDITCGEPLFSSED 55 (134)
T ss_pred CCeEEEccCCCCccccccc
Confidence 4568999999999999875
No 69
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=56.10 E-value=4.3 Score=24.38 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=9.6
Q ss_pred cceEeCCCCCCCc
Q 017789 322 EGKLSCAHCEARL 334 (366)
Q Consensus 322 ~Gkl~Cp~C~~kl 334 (366)
.+--.||+|+++|
T Consensus 14 ~~~~fC~~CG~~L 26 (26)
T PF13248_consen 14 PDAKFCPNCGAKL 26 (26)
T ss_pred cccccChhhCCCC
Confidence 3446799998876
No 70
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=55.84 E-value=6.3 Score=25.13 Aligned_cols=23 Identities=35% Similarity=0.888 Sum_probs=12.0
Q ss_pred CCCCCCCcceeee-ccccCC-CCCcc
Q 017789 327 CAHCEARLGYFNW-SGIQCS-CGSWI 350 (366)
Q Consensus 327 Cp~C~~klG~~~w-~G~~Cs-CG~~v 350 (366)
|..|++.+. ... ...+|. ||..|
T Consensus 3 C~~Cg~~~~-~~~~~~irC~~CG~RI 27 (32)
T PF03604_consen 3 CGECGAEVE-LKPGDPIRCPECGHRI 27 (32)
T ss_dssp ESSSSSSE--BSTSSTSSBSSSS-SE
T ss_pred CCcCCCeeE-cCCCCcEECCcCCCeE
Confidence 666766665 222 235675 77665
No 71
>PF09814 HECT_2: HECT-like Ubiquitin-conjugating enzyme (E2)-binding; InterPro: IPR019193 This entry consists of E3 ubiquitin-protein ligases which accept ubiquitin from specific E2 ubiquitin-conjugating enzymes, and transfer it to substrates, generally promoting their degradation by the proteasome [].
Probab=55.54 E-value=13 Score=36.56 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=15.9
Q ss_pred cccccccccceeccccccc
Q 017789 254 PAYRCKKCRRVVALQENVV 272 (366)
Q Consensus 254 ~~~rCrkCR~~l~~~~~i~ 272 (366)
+.++|++|+..|.....+.
T Consensus 105 ~~~~C~~C~~~li~~~~~~ 123 (354)
T PF09814_consen 105 FSLCCRNCKNPLIPSRNFK 123 (354)
T ss_pred eEEECCCCCCcccCccccC
Confidence 6899999999998776654
No 72
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=53.74 E-value=4 Score=28.84 Aligned_cols=16 Identities=25% Similarity=0.694 Sum_probs=13.6
Q ss_pred ccccccccceeccccc
Q 017789 255 AYRCKKCRRVVALQEN 270 (366)
Q Consensus 255 ~~rCrkCR~~l~~~~~ 270 (366)
.+||+.|.+.||...+
T Consensus 4 eiRC~~CnklLa~~g~ 19 (51)
T PF10122_consen 4 EIRCGHCNKLLAKAGE 19 (51)
T ss_pred ceeccchhHHHhhhcC
Confidence 6899999999998543
No 73
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=52.03 E-value=21 Score=25.37 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhh
Q 017789 149 AAIITAYLMRTEQLSSEGALESLRQS 174 (366)
Q Consensus 149 ~tvv~AYLm~~~~~s~~eAl~~v~~~ 174 (366)
..-+.+.||..+|++.++|+.+++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 44567889999999999999999763
No 74
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=48.59 E-value=8.1 Score=22.61 Aligned_cols=21 Identities=29% Similarity=0.702 Sum_probs=14.3
Q ss_pred eCCCCCCCcceeeeccccCC-CCCc
Q 017789 326 SCAHCEARLGYFNWSGIQCS-CGSW 349 (366)
Q Consensus 326 ~Cp~C~~klG~~~w~G~~Cs-CG~~ 349 (366)
.||+|+++|= =....|+ ||+-
T Consensus 1 ~Cp~CG~~~~---~~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIE---DDAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCC---CcCcchhhhCCc
Confidence 4999999883 1234686 8864
No 75
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=48.57 E-value=10 Score=24.70 Aligned_cols=26 Identities=31% Similarity=0.842 Sum_probs=16.3
Q ss_pred eEeCCCCCCCcceeee----cc--ccCC-CCCc
Q 017789 324 KLSCAHCEARLGYFNW----SG--IQCS-CGSW 349 (366)
Q Consensus 324 kl~Cp~C~~klG~~~w----~G--~~Cs-CG~~ 349 (366)
++.||+|+++---=+. .| .+|+ ||+-
T Consensus 2 ~i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~ 34 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHV 34 (36)
T ss_pred EEECCCCCCEEeCCHHHCCCCCcEEECCCCCCE
Confidence 5899999976432222 13 4887 8863
No 76
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=47.60 E-value=7.7 Score=34.01 Aligned_cols=22 Identities=32% Similarity=0.756 Sum_probs=11.5
Q ss_pred CCCCCCCcceeee---ccccCC-CCCc
Q 017789 327 CAHCEARLGYFNW---SGIQCS-CGSW 349 (366)
Q Consensus 327 Cp~C~~klG~~~w---~G~~Cs-CG~~ 349 (366)
||+|+.|. +|.= .|-.|+ ||.-
T Consensus 112 Cp~c~~r~-tf~eA~~~~F~Cp~Cg~~ 137 (158)
T TIGR00373 112 CPNMCVRF-TFNEAMELNFTCPRCGAM 137 (158)
T ss_pred CCCCCcEe-eHHHHHHcCCcCCCCCCE
Confidence 66666554 2322 155665 6654
No 77
>PLN02160 thiosulfate sulfurtransferase
Probab=47.19 E-value=32 Score=29.10 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=18.3
Q ss_pred hCC-cEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 017789 133 KEG-GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (366)
Q Consensus 133 ~~g-~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (366)
..+ +|+|||..| .||... +.++...|.+
T Consensus 79 ~~~~~IivyC~sG-~RS~~A--a~~L~~~G~~ 107 (136)
T PLN02160 79 NPADDILVGCQSG-ARSLKA--TTELVAAGYK 107 (136)
T ss_pred CCCCcEEEECCCc-HHHHHH--HHHHHHcCCC
Confidence 344 899999999 688544 3333455654
No 78
>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parallel sheet and helix conformation. Zinc binding occurs due to the presence of four cysteine residues positioned to bind the metal centre in a tetrahedral coordination geometry. The function of this domain is uncertain: it has been proposed that the zinc finger motif may be an essential part of the DNA binding domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3FLO_D 1N5G_A 1K0P_A 1K18_A.
Probab=46.02 E-value=7.1 Score=35.18 Aligned_cols=14 Identities=43% Similarity=0.987 Sum_probs=4.9
Q ss_pred eccccCC-CCCcccc
Q 017789 339 WSGIQCS-CGSWITP 352 (366)
Q Consensus 339 w~G~~Cs-CG~~v~P 352 (366)
+.|..|+ |++...|
T Consensus 43 ~~~~~C~~C~~~~~~ 57 (188)
T PF08996_consen 43 PSGLQCPNCSTPLSP 57 (188)
T ss_dssp TTEEEETTT--B--H
T ss_pred cCcCcCCCCCCcCCH
Confidence 4455555 5554433
No 79
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=46.02 E-value=42 Score=26.69 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCcchHHHHHHHHHHhcCC
Q 017789 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (366)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~ 162 (366)
.+|+|+|..|. ||. .+ +.+++..|.
T Consensus 67 ~~ivv~C~~G~-rs~-~a-~~~L~~~G~ 91 (109)
T cd01533 67 TPIVVNCAGRT-RSI-IG-AQSLINAGL 91 (109)
T ss_pred CeEEEECCCCc-hHH-HH-HHHHHHCCC
Confidence 38999999996 773 33 334455565
No 80
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=45.92 E-value=15 Score=29.28 Aligned_cols=31 Identities=29% Similarity=0.717 Sum_probs=20.8
Q ss_pred cceEeCCCCCCCcceeeec--------cccCC-CCCcccc
Q 017789 322 EGKLSCAHCEARLGYFNWS--------GIQCS-CGSWITP 352 (366)
Q Consensus 322 ~Gkl~Cp~C~~klG~~~w~--------G~~Cs-CG~~v~P 352 (366)
.++=+||+|+.+|.-++-. ..+|. |++-+.+
T Consensus 31 ~~rS~C~~C~~~L~~~~lIPi~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 31 FPRSHCPHCGHPLSWWDLIPILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCCCcCcCCCCcCcccccchHHHHHHhCCCCcccCCCCCh
Confidence 4456788888888776642 33785 7776644
No 81
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=45.11 E-value=39 Score=32.63 Aligned_cols=34 Identities=32% Similarity=0.573 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHH----hCC----cEEEEcCCCCcchHHHH
Q 017789 119 DYLDVCFDFIDRRR----KEG----GVLVHCFAGVSRSAAII 152 (366)
Q Consensus 119 ~~~~~~~~fI~~~~----~~g----~VLVHC~aG~sRS~tvv 152 (366)
+.++...++++..+ ++| .|-|=|.+|..||++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~ 263 (288)
T PRK05416 222 EFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIA 263 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHH
Confidence 33445455554443 345 38889999999999887
No 82
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=45.09 E-value=4.4 Score=22.97 Aligned_cols=19 Identities=26% Similarity=0.735 Sum_probs=15.9
Q ss_pred cccccccceeccccccccC
Q 017789 256 YRCKKCRRVVALQENVVDH 274 (366)
Q Consensus 256 ~rCrkCR~~l~~~~~i~~H 274 (366)
|+|..|.+......++..|
T Consensus 1 y~C~~C~~~f~~~~~l~~H 19 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRH 19 (23)
T ss_dssp EEETTTTEEESSHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHH
Confidence 6899999998887777766
No 83
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=45.09 E-value=11 Score=27.89 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=16.6
Q ss_pred eCCCCCCCcce-eeeccccCC-CCCc
Q 017789 326 SCAHCEARLGY-FNWSGIQCS-CGSW 349 (366)
Q Consensus 326 ~Cp~C~~klG~-~~w~G~~Cs-CG~~ 349 (366)
.||.|+.+... -+.....|+ ||..
T Consensus 30 ~C~~CG~~~~~~~~~r~~~C~~Cg~~ 55 (69)
T PF07282_consen 30 TCPRCGHRNKKRRSGRVFTCPNCGFE 55 (69)
T ss_pred CccCcccccccccccceEEcCCCCCE
Confidence 48888888877 444455777 8764
No 84
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=44.86 E-value=24 Score=28.14 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=25.1
Q ss_pred EEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHhhC
Q 017789 138 LVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSC 175 (366)
Q Consensus 138 LVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~v~~~R 175 (366)
..||.+ -+.++-+ +.++|...++++.+|++.+.+.-
T Consensus 54 ~~~Cf~-Cg~~Gd~-i~~v~~~~~~~f~eAv~~l~~~~ 89 (97)
T PF01807_consen 54 RFKCFG-CGKGGDV-IDFVMKYEGCSFKEAVKWLAEEF 89 (97)
T ss_dssp EEEETT-T--EE-H-HHHHHHHHT--HHHHHHHHHHHH
T ss_pred eEEECC-CCCCCcH-HhHHHHHhCCCHHHHHHHHHHHh
Confidence 689985 5777655 67789999999999999997653
No 85
>PRK00420 hypothetical protein; Validated
Probab=43.59 E-value=13 Score=30.76 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=14.0
Q ss_pred EeCCCCCCCcceeeecc-ccCC-CCCcc
Q 017789 325 LSCAHCEARLGYFNWSG-IQCS-CGSWI 350 (366)
Q Consensus 325 l~Cp~C~~klG~~~w~G-~~Cs-CG~~v 350 (366)
-+||.|++-|=.+ =.| .+|+ ||..+
T Consensus 24 ~~CP~Cg~pLf~l-k~g~~~Cp~Cg~~~ 50 (112)
T PRK00420 24 KHCPVCGLPLFEL-KDGEVVCPVHGKVY 50 (112)
T ss_pred CCCCCCCCcceec-CCCceECCCCCCee
Confidence 4677777665443 234 4664 77643
No 86
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=42.99 E-value=93 Score=24.09 Aligned_cols=58 Identities=17% Similarity=0.370 Sum_probs=29.1
Q ss_pred EEEecCCC---CCccHHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcchHHHH---HHHHHHhcCCC
Q 017789 105 MTVPIRDM---ESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAII---TAYLMRTEQLS 163 (366)
Q Consensus 105 l~ipi~D~---~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv---~AYLm~~~~~s 163 (366)
.+||.... ........+..........+.++ .|+|+|..|. |+...+ +++++...|.+
T Consensus 34 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 34 VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHHHHHHHHHHcCCC
Confidence 45666332 22333333444333333333455 7999997774 554433 34445555653
No 87
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=42.51 E-value=9.8 Score=23.38 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=5.7
Q ss_pred eCCCCCCCcc
Q 017789 326 SCAHCEARLG 335 (366)
Q Consensus 326 ~Cp~C~~klG 335 (366)
+||.|+++|=
T Consensus 1 ~CP~C~s~l~ 10 (28)
T PF03119_consen 1 TCPVCGSKLV 10 (28)
T ss_dssp B-TTT--BEE
T ss_pred CcCCCCCEeE
Confidence 5999999985
No 88
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=42.18 E-value=9.2 Score=24.02 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=9.2
Q ss_pred eCCCCCCCcceeee-ccccCC-CCC
Q 017789 326 SCAHCEARLGYFNW-SGIQCS-CGS 348 (366)
Q Consensus 326 ~Cp~C~~klG~~~w-~G~~Cs-CG~ 348 (366)
+||+|++++=.-.. ...+|+ ||.
T Consensus 5 fC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 5 FCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp B-TTT--BEEE-SSSS-EEESSSS-
T ss_pred ccCcCCccccCCCCcCEeECCCCcC
Confidence 57777776633333 124664 654
No 89
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=42.11 E-value=25 Score=33.44 Aligned_cols=28 Identities=43% Similarity=0.414 Sum_probs=22.0
Q ss_pred CCCCcchHHHHHHHHHHhcCCCHHHHHHHH
Q 017789 142 FAGVSRSAAIITAYLMRTEQLSSEGALESL 171 (366)
Q Consensus 142 ~aG~sRS~tvv~AYLm~~~~~s~~eAl~~v 171 (366)
.=|+|||++.+.+-++. |++.++|.++-
T Consensus 159 ~PGiSRSG~Ti~~~l~~--G~~r~~A~~fS 186 (259)
T PF02673_consen 159 IPGISRSGATITAGLLL--GLDREEAARFS 186 (259)
T ss_pred CCCcChHHHHHHHHHHC--CCCHHHHHHHH
Confidence 57999998888776644 88888887764
No 90
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=42.07 E-value=13 Score=27.67 Aligned_cols=13 Identities=38% Similarity=0.940 Sum_probs=11.4
Q ss_pred ccccceEeCCCCC
Q 017789 319 GALEGKLSCAHCE 331 (366)
Q Consensus 319 ~~~~Gkl~Cp~C~ 331 (366)
..++|.|.||+|+
T Consensus 48 ~i~eg~L~Cp~c~ 60 (68)
T PF03966_consen 48 EIVEGELICPECG 60 (68)
T ss_dssp ETTTTEEEETTTT
T ss_pred cccCCEEEcCCCC
Confidence 4579999999997
No 91
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=41.74 E-value=48 Score=32.02 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=15.4
Q ss_pred cEEEEcCCCCcchHHHH
Q 017789 136 GVLVHCFAGVSRSAAII 152 (366)
Q Consensus 136 ~VLVHC~aG~sRS~tvv 152 (366)
.|-|=|++|..||++++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 58889999999999887
No 92
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=39.98 E-value=16 Score=23.61 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=10.4
Q ss_pred cceEeCCCCCCCc
Q 017789 322 EGKLSCAHCEARL 334 (366)
Q Consensus 322 ~Gkl~Cp~C~~kl 334 (366)
.+++.||+|+..+
T Consensus 23 ~~~v~C~~C~~~~ 35 (38)
T TIGR02098 23 GGKVRCGKCGHVW 35 (38)
T ss_pred CCEEECCCCCCEE
Confidence 4589999999764
No 93
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=39.95 E-value=12 Score=33.49 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCChhHHHHHHHHHHcCC
Q 017789 146 SRSAAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGF 196 (366)
Q Consensus 146 sRS~tvv~AYLm~~~~~s~~eAl~~v~~~Rp~i~pn~~f~~qL~~~e~~~~ 196 (366)
+.++-.++..|....-++.++.-..+. + ......+.|..+++.+.
T Consensus 21 ~~~~~~Vl~~L~~~g~~tdeeLA~~Lg-----i-~~~~VRk~L~~L~e~gL 65 (178)
T PRK06266 21 DEEGFEVLKALIKKGEVTDEEIAEQTG-----I-KLNTVRKILYKLYDARL 65 (178)
T ss_pred CccHhHHHHHHHHcCCcCHHHHHHHHC-----C-CHHHHHHHHHHHHHCCC
Confidence 555555555555443455544433331 1 11244455555555443
No 94
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=39.48 E-value=28 Score=33.45 Aligned_cols=26 Identities=46% Similarity=0.454 Sum_probs=20.1
Q ss_pred CCCcchHHHHHHHHHHhcCCCHHHHHHH
Q 017789 143 AGVSRSAAIITAYLMRTEQLSSEGALES 170 (366)
Q Consensus 143 aG~sRS~tvv~AYLm~~~~~s~~eAl~~ 170 (366)
=|+|||++.+.|-|+. |++.++|.++
T Consensus 166 PGiSRSG~TI~a~l~~--G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLLL--GLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 5999998877776644 8888888765
No 95
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=39.40 E-value=26 Score=28.94 Aligned_cols=28 Identities=18% Similarity=0.420 Sum_probs=16.3
Q ss_pred cccceEeCCCCCCCcceeeeccccCC-CCC
Q 017789 320 ALEGKLSCAHCEARLGYFNWSGIQCS-CGS 348 (366)
Q Consensus 320 ~~~Gkl~Cp~C~~klG~~~w~G~~Cs-CG~ 348 (366)
...++..|+.|+..-. .......|+ ||.
T Consensus 66 ~vp~~~~C~~Cg~~~~-~~~~~~~CP~Cgs 94 (113)
T PRK12380 66 YKPAQAWCWDCSQVVE-IHQHDAQCPHCHG 94 (113)
T ss_pred eeCcEEEcccCCCEEe-cCCcCccCcCCCC
Confidence 3567888988983222 111233587 884
No 96
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=39.20 E-value=56 Score=28.52 Aligned_cols=27 Identities=19% Similarity=0.041 Sum_probs=19.4
Q ss_pred CcEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 017789 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (366)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (366)
.+|+|.|..|..||.. +++++...|.+
T Consensus 117 ~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 117 RPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 3899999998777765 45565666643
No 97
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=39.12 E-value=29 Score=32.93 Aligned_cols=27 Identities=37% Similarity=0.421 Sum_probs=20.3
Q ss_pred CCCCcchHHHHHHHHHHhcCCCHHHHHHH
Q 017789 142 FAGVSRSAAIITAYLMRTEQLSSEGALES 170 (366)
Q Consensus 142 ~aG~sRS~tvv~AYLm~~~~~s~~eAl~~ 170 (366)
.=|+|||++.+.|-|+. |++.++|.++
T Consensus 159 iPGiSRSG~TI~a~l~~--G~~r~~Aa~f 185 (255)
T TIGR00753 159 IPGVSRSGSTISGGLFI--GLNRKAAAEF 185 (255)
T ss_pred ccCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 35999998877776644 8888888765
No 98
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=38.88 E-value=25 Score=29.09 Aligned_cols=29 Identities=17% Similarity=0.399 Sum_probs=17.3
Q ss_pred ccceEeCCCCCCCcceeeeccccCC-CCCc
Q 017789 321 LEGKLSCAHCEARLGYFNWSGIQCS-CGSW 349 (366)
Q Consensus 321 ~~Gkl~Cp~C~~klG~~~w~G~~Cs-CG~~ 349 (366)
..++..|+.|+...-.-.+.-..|+ ||..
T Consensus 67 ~p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 96 (114)
T PRK03681 67 QEAECWCETCQQYVTLLTQRVRRCPQCHGD 96 (114)
T ss_pred eCcEEEcccCCCeeecCCccCCcCcCcCCC
Confidence 5677888888853322233335687 8843
No 99
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=38.31 E-value=14 Score=27.22 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=15.3
Q ss_pred EeCCCCCCCcceeeeccc
Q 017789 325 LSCAHCEARLGYFNWSGI 342 (366)
Q Consensus 325 l~Cp~C~~klG~~~w~G~ 342 (366)
-.||.|++.==+.+|.|+
T Consensus 19 e~CP~Cgs~~~te~W~G~ 36 (64)
T COG2093 19 EICPVCGSTDLTEEWFGL 36 (64)
T ss_pred ccCCCCCCcccchhhccE
Confidence 459999999669999995
No 100
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=38.19 E-value=31 Score=26.99 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCcchHHHHHHHHHH
Q 017789 134 EGGVLVHCFAGVSRSAAIITAYLMR 158 (366)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AYLm~ 158 (366)
+.+++|+|..|. || ..++.+|..
T Consensus 61 ~~~ivv~C~~G~-rS-~~aa~~L~~ 83 (110)
T COG0607 61 DDPIVVYCASGV-RS-AAAAAALKL 83 (110)
T ss_pred CCeEEEEeCCCC-Ch-HHHHHHHHH
Confidence 348999999994 88 444455544
No 101
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=38.14 E-value=15 Score=31.63 Aligned_cols=16 Identities=25% Similarity=0.675 Sum_probs=13.2
Q ss_pred cceEeCCCCCCCccee
Q 017789 322 EGKLSCAHCEARLGYF 337 (366)
Q Consensus 322 ~Gkl~Cp~C~~klG~~ 337 (366)
+|++.||.|++.|=.+
T Consensus 121 ~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 121 DGTFTCPRCGEELEED 136 (147)
T ss_pred CCcEECCCCCCEEEEc
Confidence 6889999999988543
No 102
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=37.76 E-value=19 Score=23.47 Aligned_cols=10 Identities=30% Similarity=1.122 Sum_probs=8.0
Q ss_pred eEeCCCCCCC
Q 017789 324 KLSCAHCEAR 333 (366)
Q Consensus 324 kl~Cp~C~~k 333 (366)
++.||+|+++
T Consensus 2 ~i~CP~C~~~ 11 (37)
T PF13719_consen 2 IITCPNCQTR 11 (37)
T ss_pred EEECCCCCce
Confidence 4789999964
No 103
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=37.72 E-value=23 Score=30.73 Aligned_cols=26 Identities=27% Similarity=0.764 Sum_probs=17.2
Q ss_pred cceEeCCCCCCCcceeeecc--ccCC-CCC
Q 017789 322 EGKLSCAHCEARLGYFNWSG--IQCS-CGS 348 (366)
Q Consensus 322 ~Gkl~Cp~C~~klG~~~w~G--~~Cs-CG~ 348 (366)
-|.+.|-+|+.++ .|+-.+ ..|+ ||.
T Consensus 110 ~G~l~C~~Cg~~~-~~~~~~~l~~Cp~C~~ 138 (146)
T PF07295_consen 110 PGTLVCENCGHEV-ELTHPERLPPCPKCGH 138 (146)
T ss_pred CceEecccCCCEE-EecCCCcCCCCCCCCC
Confidence 5778888888777 455455 3665 664
No 104
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=37.29 E-value=34 Score=32.77 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=15.3
Q ss_pred cEEEEcCCCCcchHHHH
Q 017789 136 GVLVHCFAGVSRSAAII 152 (366)
Q Consensus 136 ~VLVHC~aG~sRS~tvv 152 (366)
.|-|=|.+|..||++++
T Consensus 245 TIaIGCTGGqHRSV~ia 261 (286)
T COG1660 245 TIAIGCTGGQHRSVYIA 261 (286)
T ss_pred EEEEccCCCccchHHHH
Confidence 48899999999999887
No 105
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=37.15 E-value=33 Score=32.84 Aligned_cols=26 Identities=46% Similarity=0.455 Sum_probs=20.0
Q ss_pred CCCcchHHHHHHHHHHhcCCCHHHHHHH
Q 017789 143 AGVSRSAAIITAYLMRTEQLSSEGALES 170 (366)
Q Consensus 143 aG~sRS~tvv~AYLm~~~~~s~~eAl~~ 170 (366)
=|+|||++.+.+-|+ .|++.++|.++
T Consensus 164 PGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 699999887777664 48888888665
No 106
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=37.00 E-value=39 Score=32.97 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=18.0
Q ss_pred CcEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 017789 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (366)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (366)
.+|+|+|..| .|| +.+++||.. .|.+
T Consensus 172 k~IvvyC~~G-~Rs-~~aa~~L~~-~Gf~ 197 (314)
T PRK00142 172 KKVVMYCTGG-IRC-EKASAWMKH-EGFK 197 (314)
T ss_pred CeEEEECCCC-cHH-HHHHHHHHH-cCCC
Confidence 4899999999 487 455566644 4653
No 107
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=36.50 E-value=80 Score=24.57 Aligned_cols=26 Identities=23% Similarity=0.528 Sum_probs=16.8
Q ss_pred CcEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 017789 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (366)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (366)
.+|+|+|..| .||... +.+| ...|.+
T Consensus 59 ~~vv~~c~~g-~rs~~~-~~~l-~~~G~~ 84 (101)
T cd01528 59 KDIVVLCHHG-GRSMQV-AQWL-LRQGFE 84 (101)
T ss_pred CeEEEEeCCC-chHHHH-HHHH-HHcCCc
Confidence 3899999998 587444 3334 445654
No 108
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=36.21 E-value=52 Score=25.34 Aligned_cols=27 Identities=15% Similarity=-0.045 Sum_probs=16.3
Q ss_pred CcEEEEcCCCCcchHHHHHHHHHHhcCC
Q 017789 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (366)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~ 162 (366)
.+|+|+|..|. |+.+.-++..+...|.
T Consensus 51 ~~ivl~c~~G~-~~~s~~aa~~L~~~G~ 77 (92)
T cd01532 51 TPIVVYGEGGG-EDLAPRAARRLSELGY 77 (92)
T ss_pred CeEEEEeCCCC-chHHHHHHHHHHHcCc
Confidence 38999999985 4433333444454554
No 109
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=36.11 E-value=54 Score=25.44 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=16.8
Q ss_pred CcEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 017789 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (366)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (366)
.+|+|+|..|. ||.. ++.. +...|.+
T Consensus 62 ~~ivv~C~~G~-rs~~-aa~~-L~~~G~~ 87 (100)
T cd01523 62 QEVTVICAKEG-SSQF-VAEL-LAERGYD 87 (100)
T ss_pred CeEEEEcCCCC-cHHH-HHHH-HHHcCce
Confidence 48999999994 8743 3333 3455653
No 110
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=36.03 E-value=17 Score=25.86 Aligned_cols=32 Identities=22% Similarity=0.590 Sum_probs=21.3
Q ss_pred CCCCceeeee-ccccchhhhcccccceEeCCCCCC
Q 017789 299 ESECSSIFVE-PLRWMTAVEEGALEGKLSCAHCEA 332 (366)
Q Consensus 299 ~~~C~~~fie-p~~Wm~~~~~~~~~Gkl~Cp~C~~ 332 (366)
...|+.-+++ |-+.+..+..+ ++-+.||+|+.
T Consensus 22 ~~~C~gC~~~l~~~~~~~i~~~--~~i~~Cp~CgR 54 (56)
T PF02591_consen 22 GGTCSGCHMELPPQELNEIRKG--DEIVFCPNCGR 54 (56)
T ss_pred CCccCCCCEEcCHHHHHHHHcC--CCeEECcCCCc
Confidence 4578866664 55555554433 67899999985
No 111
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=35.55 E-value=40 Score=27.99 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=22.8
Q ss_pred CCCCcchHHHHHHHHHHhcCCCHHHHHHHHHhhC
Q 017789 142 FAGVSRSAAIITAYLMRTEQLSSEGALESLRQSC 175 (366)
Q Consensus 142 ~aG~sRS~tvv~AYLm~~~~~s~~eAl~~v~~~R 175 (366)
..|++|+.|.+++||+...-.+-.+ ++.+...|
T Consensus 22 ~lgi~R~vA~tlv~L~~~~E~sS~~-IE~~sgLR 54 (124)
T COG4738 22 ILGIPRNVATTLVCLAKGDEASSRE-IERVSGLR 54 (124)
T ss_pred HcCCCchHHHHHHHHhcCcchhhhh-hHHhhcCC
Confidence 4689999999999999875444333 34444444
No 112
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=35.14 E-value=31 Score=33.25 Aligned_cols=19 Identities=21% Similarity=0.578 Sum_probs=16.4
Q ss_pred CCcccccccccceeccccc
Q 017789 252 RTPAYRCKKCRRVVALQEN 270 (366)
Q Consensus 252 ~~~~~rCrkCR~~l~~~~~ 270 (366)
....|.|.-|...||.+.+
T Consensus 33 ~~G~y~c~~c~~~LF~s~~ 51 (283)
T PRK05550 33 EKGVYLCRRCGAPLFRSED 51 (283)
T ss_pred CCcEEEcCCCCchhcCChh
Confidence 4569999999999999765
No 113
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=34.47 E-value=28 Score=28.81 Aligned_cols=28 Identities=14% Similarity=0.358 Sum_probs=16.8
Q ss_pred ccceEeCCCCCCCcceeeeccccCC-CCCc
Q 017789 321 LEGKLSCAHCEARLGYFNWSGIQCS-CGSW 349 (366)
Q Consensus 321 ~~Gkl~Cp~C~~klG~~~w~G~~Cs-CG~~ 349 (366)
..++..|+.|+..- ........|+ ||..
T Consensus 67 ~p~~~~C~~Cg~~~-~~~~~~~~CP~Cgs~ 95 (115)
T TIGR00100 67 EPVECECEDCSEEV-SPEIDLYRCPKCHGI 95 (115)
T ss_pred eCcEEEcccCCCEE-ecCCcCccCcCCcCC
Confidence 46778898898332 2222345685 8854
No 114
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=34.37 E-value=28 Score=40.02 Aligned_cols=25 Identities=28% Similarity=0.780 Sum_probs=14.5
Q ss_pred ceEeCCCCCCCcceeeeccccCC-CCCcccc
Q 017789 323 GKLSCAHCEARLGYFNWSGIQCS-CGSWITP 352 (366)
Q Consensus 323 Gkl~Cp~C~~klG~~~w~G~~Cs-CG~~v~P 352 (366)
|...||+|++-.-. ..|+ ||+...|
T Consensus 666 ~~rkCPkCG~~t~~-----~fCP~CGs~te~ 691 (1337)
T PRK14714 666 GRRRCPSCGTETYE-----NRCPDCGTHTEP 691 (1337)
T ss_pred EEEECCCCCCcccc-----ccCcccCCcCCC
Confidence 46788888775321 1565 6655543
No 115
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=33.98 E-value=23 Score=39.52 Aligned_cols=32 Identities=22% Similarity=0.654 Sum_probs=26.5
Q ss_pred cceEeCCCCCCCcceeeeccccCC-CCCccccce
Q 017789 322 EGKLSCAHCEARLGYFNWSGIQCS-CGSWITPAF 354 (366)
Q Consensus 322 ~Gkl~Cp~C~~klG~~~w~G~~Cs-CG~~v~Pa~ 354 (366)
..+.-|.||++|-=.-=-+| +|. ||..+.+.+
T Consensus 1010 rQ~fRC~kC~~kYRR~PL~G-~C~kCGg~lilTV 1042 (1095)
T TIGR00354 1010 RQEVRCTKCNTKYRRIPLVG-KCLKCGNNLTLTV 1042 (1095)
T ss_pred ccceeecccCCccccCCCCC-cccccCCeEEEEE
Confidence 45789999999987777788 996 999996654
No 116
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=33.91 E-value=78 Score=26.10 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=19.4
Q ss_pred HhCC-cEEEEcCCCCcchHHHHHHHHHHhcCC
Q 017789 132 RKEG-GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (366)
Q Consensus 132 ~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~~~ 162 (366)
+.++ +|+|.|..|-.||..+ ++++...|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a--~~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSL--AWLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHH--HHHHHHcCC
Confidence 3444 8999998554677643 377777676
No 117
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.60 E-value=25 Score=27.21 Aligned_cols=23 Identities=35% Similarity=0.713 Sum_probs=16.8
Q ss_pred EeCCCCCCCcceeeeccc---cCC-CC
Q 017789 325 LSCAHCEARLGYFNWSGI---QCS-CG 347 (366)
Q Consensus 325 l~Cp~C~~klG~~~w~G~---~Cs-CG 347 (366)
+.||.|++-|=.-.=+|. +|+ |+
T Consensus 2 llCP~C~v~l~~~~rs~vEiD~CPrCr 28 (88)
T COG3809 2 LLCPICGVELVMSVRSGVEIDYCPRCR 28 (88)
T ss_pred cccCcCCceeeeeeecCceeeeCCccc
Confidence 568888888877777773 676 64
No 118
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=33.41 E-value=59 Score=26.24 Aligned_cols=26 Identities=27% Similarity=-0.101 Sum_probs=17.6
Q ss_pred cEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 017789 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (366)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (366)
+|+|+|..| +++++.++.+| +..|++
T Consensus 81 ~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 81 TVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred EEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 899999998 56656654444 555654
No 119
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=33.14 E-value=19 Score=33.73 Aligned_cols=36 Identities=22% Similarity=0.676 Sum_probs=27.6
Q ss_pred ceEeCCCCCCCcceeeeccccCC-CCCccccceeeecCCc
Q 017789 323 GKLSCAHCEARLGYFNWSGIQCS-CGSWITPAFQLHKSRV 361 (366)
Q Consensus 323 Gkl~Cp~C~~klG~~~w~G~~Cs-CG~~v~Pa~~l~~skv 361 (366)
-+..|-+|++|+|.---+| +|. ||..+ -.-+|+.+|
T Consensus 166 q~~rc~~c~~k~rr~pl~g-~c~kcg~~~--~ltv~~g~v 202 (253)
T COG1933 166 QEFRCVKCNTKFRRPPLDG-KCPICGGKI--VLTVSKGAI 202 (253)
T ss_pred heeehHhhhhhhcCCCccc-cccccCCeE--EEEEeccHH
Confidence 3578999999999999999 888 99855 444555544
No 120
>KOG3399 consensus Predicted Yippee-type zinc-binding protein [General function prediction only]
Probab=33.05 E-value=18 Score=30.26 Aligned_cols=24 Identities=17% Similarity=0.520 Sum_probs=21.1
Q ss_pred CcccccccccceeccccccccCCC
Q 017789 253 TPAYRCKKCRRVVALQENVVDHIP 276 (366)
Q Consensus 253 ~~~~rCrkCR~~l~~~~~i~~H~~ 276 (366)
...|+|+.|+.-|+...+++.+.-
T Consensus 13 ~~~y~C~~C~thla~~~dliSksf 36 (122)
T KOG3399|consen 13 HRLYSCAHCKTHLARHDDLISKSF 36 (122)
T ss_pred CceEeccCCcccccchhhcccccc
Confidence 458999999999999999998754
No 121
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=32.99 E-value=9.6 Score=27.24 Aligned_cols=16 Identities=38% Similarity=0.841 Sum_probs=13.1
Q ss_pred ccccccccceeccccc
Q 017789 255 AYRCKKCRRVVALQEN 270 (366)
Q Consensus 255 ~~rCrkCR~~l~~~~~ 270 (366)
.+||++|.++|+..+.
T Consensus 4 tiRC~~CnKlLa~a~~ 19 (60)
T COG4416 4 TIRCAKCNKLLAEAEG 19 (60)
T ss_pred eeehHHHhHHHHhccc
Confidence 5799999999987553
No 122
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=32.69 E-value=24 Score=24.84 Aligned_cols=8 Identities=25% Similarity=0.804 Sum_probs=5.8
Q ss_pred EeCCCCCC
Q 017789 325 LSCAHCEA 332 (366)
Q Consensus 325 l~Cp~C~~ 332 (366)
-.||+|++
T Consensus 21 ~fCP~Cg~ 28 (50)
T PRK00432 21 KFCPRCGS 28 (50)
T ss_pred CcCcCCCc
Confidence 37888876
No 123
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=32.16 E-value=1.5e+02 Score=25.05 Aligned_cols=60 Identities=15% Similarity=0.318 Sum_probs=37.5
Q ss_pred eEEEEEecCCCCCc-cHHHHHHHHHHHHHHHHhCCc--EEEEcCCCCcchHHHHHHHHHHhcC
Q 017789 102 LVRMTVPIRDMESE-NLLDYLDVCFDFIDRRRKEGG--VLVHCFAGVSRSAAIITAYLMRTEQ 161 (366)
Q Consensus 102 i~~l~ipi~D~~~~-~l~~~~~~~~~fI~~~~~~g~--VLVHC~aG~sRS~tvv~AYLm~~~~ 161 (366)
+.-..+|++|...+ +....++.+.+.|.+..++++ .+.-|.+|-=++-++.++|.+.-+|
T Consensus 54 i~~i~~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 54 VHKIPLKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred EEEeccCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHHHHHhC
Confidence 33444566675543 334555555666666666665 4666778855567788888887766
No 124
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=32.08 E-value=9.9 Score=22.40 Aligned_cols=21 Identities=14% Similarity=0.572 Sum_probs=17.7
Q ss_pred ccccccccceeccccccccCC
Q 017789 255 AYRCKKCRRVVALQENVVDHI 275 (366)
Q Consensus 255 ~~rCrkCR~~l~~~~~i~~H~ 275 (366)
.|+|..|.+..-+...++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~ 21 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHK 21 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHH
T ss_pred CCCCCccCCccCChhHHHHHh
Confidence 378999999988888888885
No 125
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=31.73 E-value=24 Score=26.00 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=14.8
Q ss_pred eCCCCCCCcceeeeccc
Q 017789 326 SCAHCEARLGYFNWSGI 342 (366)
Q Consensus 326 ~Cp~C~~klG~~~w~G~ 342 (366)
.||.|++.-=+-+|.|.
T Consensus 17 ~CP~Cgs~~~T~~W~G~ 33 (61)
T PRK08351 17 RCPVCGSRDLSDEWFDL 33 (61)
T ss_pred cCCCCcCCccccccccE
Confidence 49999998888899994
No 126
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=30.91 E-value=14 Score=27.04 Aligned_cols=12 Identities=50% Similarity=1.281 Sum_probs=9.7
Q ss_pred Ccccccccccce
Q 017789 253 TPAYRCKKCRRV 264 (366)
Q Consensus 253 ~~~~rCrkCR~~ 264 (366)
...|||.|||+.
T Consensus 36 ~~I~Rc~~CRk~ 47 (61)
T COG2888 36 VEIYRCAKCRKL 47 (61)
T ss_pred eeeehhhhHHHc
Confidence 468999999973
No 127
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=30.59 E-value=2.1e+02 Score=27.93 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEcCCCCcchHHHHHHHHH
Q 017789 121 LDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLM 157 (366)
Q Consensus 121 ~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AYLm 157 (366)
|++.++-..+.++..+|...|++|+ |- =-+.|||.
T Consensus 159 fP~~v~~~~~~~~~KkVvmyCTGGI-RC-EKas~~m~ 193 (308)
T COG1054 159 FPAWVEENLDLLKDKKVVMYCTGGI-RC-EKASAWMK 193 (308)
T ss_pred hHHHHHHHHHhccCCcEEEEcCCce-ee-hhhHHHHH
Confidence 4443333333334459999999998 74 34445443
No 128
>PRK11032 hypothetical protein; Provisional
Probab=30.51 E-value=36 Score=30.05 Aligned_cols=26 Identities=35% Similarity=0.776 Sum_probs=20.5
Q ss_pred cceEeCCCCCCCcceeeecc--ccCC-CCC
Q 017789 322 EGKLSCAHCEARLGYFNWSG--IQCS-CGS 348 (366)
Q Consensus 322 ~Gkl~Cp~C~~klG~~~w~G--~~Cs-CG~ 348 (366)
-|.|.|-+|+-++ .|.-.| ..|+ ||.
T Consensus 122 ~G~LvC~~Cg~~~-~~~~p~~i~pCp~C~~ 150 (160)
T PRK11032 122 LGNLVCEKCHHHL-AFYTPEVLPLCPKCGH 150 (160)
T ss_pred cceEEecCCCCEE-EecCCCcCCCCCCCCC
Confidence 5789999999888 777776 4786 875
No 129
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=30.17 E-value=26 Score=23.89 Aligned_cols=12 Identities=25% Similarity=0.758 Sum_probs=9.8
Q ss_pred ceEeCCCCCCCc
Q 017789 323 GKLSCAHCEARL 334 (366)
Q Consensus 323 Gkl~Cp~C~~kl 334 (366)
+.+.||.|+.|+
T Consensus 18 ~~irC~~CG~rI 29 (44)
T smart00659 18 DVVRCRECGYRI 29 (44)
T ss_pred CceECCCCCceE
Confidence 458899999876
No 130
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=29.77 E-value=24 Score=31.60 Aligned_cols=11 Identities=18% Similarity=0.036 Sum_probs=6.4
Q ss_pred cccccccccee
Q 017789 255 AYRCKKCRRVV 265 (366)
Q Consensus 255 ~~rCrkCR~~l 265 (366)
...|+|||...
T Consensus 61 li~~~k~rd~~ 71 (176)
T COG1675 61 LISYRKKRDEE 71 (176)
T ss_pred ceEEEeecccC
Confidence 44567776544
No 131
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=29.70 E-value=47 Score=34.90 Aligned_cols=20 Identities=5% Similarity=-0.097 Sum_probs=17.1
Q ss_pred CCCcccccccccceeccccc
Q 017789 251 NRTPAYRCKKCRRVVALQEN 270 (366)
Q Consensus 251 ~~~~~~rCrkCR~~l~~~~~ 270 (366)
.....|.|+.|...||.+.+
T Consensus 414 ~~~G~y~c~~c~~pLf~s~~ 433 (521)
T PRK14018 414 FKPGIYVDVVSGEPLFSSAD 433 (521)
T ss_pred CCCEEEEecCCCCccccCcc
Confidence 45679999999999999863
No 132
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=29.60 E-value=2.5e+02 Score=22.97 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=14.0
Q ss_pred hhhhcCCCeEEEEccc
Q 017789 21 LQNGSSEITHMLSVLS 36 (366)
Q Consensus 21 ~~L~~~gIt~Vlnl~~ 36 (366)
+.|++.||+.||+|..
T Consensus 7 ~~l~~~~i~~lVDVR~ 22 (122)
T PF04343_consen 7 DLLKKNGIRVLVDVRL 22 (122)
T ss_pred HHHHHCCCeEEEEECC
Confidence 4688999999999976
No 133
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=29.50 E-value=28 Score=23.65 Aligned_cols=11 Identities=27% Similarity=0.791 Sum_probs=9.3
Q ss_pred eEeCCCCCCCc
Q 017789 324 KLSCAHCEARL 334 (366)
Q Consensus 324 kl~Cp~C~~kl 334 (366)
.+.||.|++++
T Consensus 21 ~~~Cp~CG~~~ 31 (46)
T PRK00398 21 GVRCPYCGYRI 31 (46)
T ss_pred ceECCCCCCeE
Confidence 58999999776
No 134
>PRK05320 rhodanese superfamily protein; Provisional
Probab=29.06 E-value=73 Score=30.17 Aligned_cols=26 Identities=15% Similarity=0.223 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCCcchHHHHHHHHHHhcCC
Q 017789 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (366)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AYLm~~~~~ 162 (366)
..+|+++|..| .|| ..++++|.. .|.
T Consensus 175 dk~IvvyC~~G-~Rs-~~Aa~~L~~-~Gf 200 (257)
T PRK05320 175 GKTVVSFCTGG-IRC-EKAAIHMQE-VGI 200 (257)
T ss_pred CCeEEEECCCC-HHH-HHHHHHHHH-cCC
Confidence 44899999999 487 445566643 454
No 135
>COG5629 Predicted metal-binding protein [Function unknown]
Probab=28.51 E-value=30 Score=32.94 Aligned_cols=35 Identities=34% Similarity=0.515 Sum_probs=22.8
Q ss_pred cceEeCCCCCCCcceee---------ec-cccCCCCCccccceee
Q 017789 322 EGKLSCAHCEARLGYFN---------WS-GIQCSCGSWITPAFQL 356 (366)
Q Consensus 322 ~Gkl~Cp~C~~klG~~~---------w~-G~~CsCG~~v~Pa~~l 356 (366)
+-||+|-+|+|+||--| |. ..-|+=.+.+-|.+-|
T Consensus 167 NfklhCsfCnA~lGlpn~~s~~kl~r~~k~~I~~g~tKihP~~di 211 (321)
T COG5629 167 NFKLHCSFCNARLGLPNDSSIRKLFRYNKEVIPNGCTKIHPHEDL 211 (321)
T ss_pred CcceeeehhhhhhCCCCchhhhhhhhcchheecCCCcccCchHHH
Confidence 56999999999998644 43 2345533456665543
No 136
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=28.42 E-value=2.9e+02 Score=26.57 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=55.3
Q ss_pred CCcceEEEEEecCCCCCc-----cHHHHHHHHHHHHHHHHhCCcEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHH
Q 017789 98 KDLKLVRMTVPIRDMESE-----NLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLR 172 (366)
Q Consensus 98 ~~~~i~~l~ipi~D~~~~-----~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~v~ 172 (366)
.+..+....+|..|.... +....++..++..+.++..+.+=++|..|+.= + -+.+|+... +++++|++.++
T Consensus 32 GGt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvHP--a-E~~~l~e~~-~~peea~e~m~ 107 (285)
T COG1831 32 GGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVHP--A-EVSRLAEAG-RSPEEALEEMR 107 (285)
T ss_pred CCcEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCH--H-HHHHHHHhc-cChHHHHHHHH
Confidence 344566677777765544 67777888888888888888888999999863 2 346787775 99999999887
Q ss_pred hh
Q 017789 173 QS 174 (366)
Q Consensus 173 ~~ 174 (366)
..
T Consensus 108 ~~ 109 (285)
T COG1831 108 HA 109 (285)
T ss_pred HH
Confidence 64
No 137
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=28.01 E-value=1.1e+02 Score=24.66 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCcchHHHHHHHHHHhcCC
Q 017789 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (366)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~ 162 (366)
.+|+|+|..| .||..++ .++...|.
T Consensus 65 ~~ivv~C~~G-~rs~~aa--~~L~~~G~ 89 (117)
T cd01522 65 RPVLLLCRSG-NRSIAAA--EAAAQAGF 89 (117)
T ss_pred CeEEEEcCCC-ccHHHHH--HHHHHCCC
Confidence 3899999998 5876543 33344554
No 138
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=27.96 E-value=2.1e+02 Score=22.65 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEcCCCCcchHHHHHHHHHHhcCCCHH
Q 017789 121 LDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSE 165 (366)
Q Consensus 121 ~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~ 165 (366)
++.+.++|+...+.|.-++-....-+||..-.+..| ...|++..
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L-~~~Gi~~~ 59 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL-KKLGIPVD 59 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH-HHTTTT--
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH-HhcCcCCC
Confidence 678889999999998444444555588888877877 66786543
No 139
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=27.44 E-value=2e+02 Score=29.23 Aligned_cols=52 Identities=29% Similarity=0.468 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhCC--cEEEEcC-----------CC-----CcchHHHHHHHHHHhcCC-----CHHHHHHHHHh
Q 017789 122 DVCFDFIDRRRKEG--GVLVHCF-----------AG-----VSRSAAIITAYLMRTEQL-----SSEGALESLRQ 173 (366)
Q Consensus 122 ~~~~~fI~~~~~~g--~VLVHC~-----------aG-----~sRS~tvv~AYLm~~~~~-----s~~eAl~~v~~ 173 (366)
+..++.|++..++| =+-|||. .| +||.+++.++|++....- .+++-++..++
T Consensus 140 d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~ 214 (423)
T TIGR00190 140 DDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKE 214 (423)
T ss_pred HHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHH
Confidence 44566688888888 4889995 12 799999999999987553 34455555554
No 140
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=27.23 E-value=31 Score=29.32 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=9.7
Q ss_pred cceEeCCCCCC
Q 017789 322 EGKLSCAHCEA 332 (366)
Q Consensus 322 ~Gkl~Cp~C~~ 332 (366)
.|+++||.|+-
T Consensus 42 dG~v~CPvC~~ 52 (131)
T COG1645 42 DGEVFCPVCGY 52 (131)
T ss_pred CCeEECCCCCc
Confidence 78899999984
No 141
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=27.04 E-value=2e+02 Score=29.29 Aligned_cols=52 Identities=29% Similarity=0.508 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCC--cEEEEcCC----------------CCcchHHHHHHHHHHhcCC-----CHHHHHHHHHh
Q 017789 122 DVCFDFIDRRRKEG--GVLVHCFA----------------GVSRSAAIITAYLMRTEQL-----SSEGALESLRQ 173 (366)
Q Consensus 122 ~~~~~fI~~~~~~g--~VLVHC~a----------------G~sRS~tvv~AYLm~~~~~-----s~~eAl~~v~~ 173 (366)
+..++.|++..++| =+-|||-. =+||.+++.++|+++...- .+++-++..++
T Consensus 143 d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~ 217 (431)
T PRK13352 143 DDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKE 217 (431)
T ss_pred HHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHH
Confidence 34456678888888 58999941 1799999999999986543 34555555554
No 142
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=27.00 E-value=34 Score=39.36 Aligned_cols=30 Identities=23% Similarity=0.702 Sum_probs=17.6
Q ss_pred ceEeCCCCCCCcceeeeccccCC-CCCccccc
Q 017789 323 GKLSCAHCEARLGYFNWSGIQCS-CGSWITPA 353 (366)
Q Consensus 323 Gkl~Cp~C~~klG~~~w~G~~Cs-CG~~v~Pa 353 (366)
.+.-|.||++|-=.-=-+| +|. ||..|.+.
T Consensus 1252 Q~~RC~kC~~kyRR~PL~G-~C~kCGg~iilT 1282 (1337)
T PRK14714 1252 QEFRCLKCGTKYRRMPLAG-KCRKCGGRIILT 1282 (1337)
T ss_pred cceeecccCcccccCCCCC-cccccCCeEEEE
Confidence 3566666666655555555 664 66666443
No 143
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=26.60 E-value=17 Score=34.17 Aligned_cols=25 Identities=20% Similarity=0.527 Sum_probs=11.3
Q ss_pred hhcccccceEeCCCCCCC-cceeeec
Q 017789 316 VEEGALEGKLSCAHCEAR-LGYFNWS 340 (366)
Q Consensus 316 ~~~~~~~Gkl~Cp~C~~k-lG~~~w~ 340 (366)
+.+.|+....+||+|+++ |-.|.=.
T Consensus 23 ltE~Wv~~n~yCP~Cg~~~L~~f~NN 48 (254)
T PF06044_consen 23 LTEDWVAENMYCPNCGSKPLSKFENN 48 (254)
T ss_dssp HHHHHHHHH---TTT--SS-EE----
T ss_pred HHHHHHHHCCcCCCCCChhHhhccCC
Confidence 445677778999999999 8888654
No 144
>PRK04023 DNA polymerase II large subunit; Validated
Probab=26.58 E-value=35 Score=38.34 Aligned_cols=32 Identities=25% Similarity=0.630 Sum_probs=23.1
Q ss_pred cceEeCCCCCCCcceeeeccccCC-CCCccccce
Q 017789 322 EGKLSCAHCEARLGYFNWSGIQCS-CGSWITPAF 354 (366)
Q Consensus 322 ~Gkl~Cp~C~~klG~~~w~G~~Cs-CG~~v~Pa~ 354 (366)
..+.-|.||++|-=.-=-+| +|. ||..|.+.+
T Consensus 1035 rQ~fRC~kC~~kYRR~PL~G-~C~kCGg~lilTV 1067 (1121)
T PRK04023 1035 RQEFRCTKCGAKYRRPPLSG-KCPKCGGNLILTV 1067 (1121)
T ss_pred ccceeecccCcccccCCCCC-cCccCCCeEEEEE
Confidence 45678888888876666677 785 888885544
No 145
>smart00355 ZnF_C2H2 zinc finger.
Probab=26.36 E-value=14 Score=20.68 Aligned_cols=20 Identities=30% Similarity=0.858 Sum_probs=15.5
Q ss_pred cccccccceeccccccccCC
Q 017789 256 YRCKKCRRVVALQENVVDHI 275 (366)
Q Consensus 256 ~rCrkCR~~l~~~~~i~~H~ 275 (366)
|+|..|.+......++..|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~ 20 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHM 20 (26)
T ss_pred CCCCCCcchhCCHHHHHHHH
Confidence 57999998887777777664
No 146
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=25.75 E-value=14 Score=20.40 Aligned_cols=19 Identities=16% Similarity=0.602 Sum_probs=13.2
Q ss_pred cccccccceeccccccccC
Q 017789 256 YRCKKCRRVVALQENVVDH 274 (366)
Q Consensus 256 ~rCrkCR~~l~~~~~i~~H 274 (366)
|.|..|.+...+...+..|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H 19 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQH 19 (24)
T ss_dssp EE-SSTS-EESSHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHH
Confidence 6799999988777776666
No 147
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=25.09 E-value=2.6e+02 Score=25.86 Aligned_cols=52 Identities=33% Similarity=0.408 Sum_probs=35.9
Q ss_pred CCccHHHHHHHHHHHHHHHH----hCC-cEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHH
Q 017789 113 ESENLLDYLDVCFDFIDRRR----KEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALES 170 (366)
Q Consensus 113 ~~~~l~~~~~~~~~fI~~~~----~~g-~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~ 170 (366)
..+.+...++.++.|.++.+ .+| .|+|+|++..-| |++|+-.|.+.++....
T Consensus 130 ~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR------~i~~~l~g~s~~~i~~~ 186 (214)
T KOG0235|consen 130 DGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLR------AIVKHLEGISDEAIKEL 186 (214)
T ss_pred CCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHH------HHHHHHhcCCHhhhhhe
Confidence 45667777888888887765 356 899999773333 45667778887665443
No 148
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=24.81 E-value=28 Score=26.56 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=5.8
Q ss_pred ccceEeCCCCCCC
Q 017789 321 LEGKLSCAHCEAR 333 (366)
Q Consensus 321 ~~Gkl~Cp~C~~k 333 (366)
...|+.||+|+.+
T Consensus 21 ~~~k~FCp~CGn~ 33 (73)
T PF08772_consen 21 DMTKQFCPKCGNA 33 (73)
T ss_dssp -SS--S-SSS--S
T ss_pred CCCceeCcccCCC
Confidence 3578999999864
No 149
>KOG4784 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.80 E-value=52 Score=32.51 Aligned_cols=87 Identities=17% Similarity=0.364 Sum_probs=47.8
Q ss_pred CCcccccccccceecccccccc--CCCCCC--Cchhhh--hhcccCCC--CCCCCCCCC----ceeeee---ccccchhh
Q 017789 252 RTPAYRCKKCRRVVALQENVVD--HIPGEG--ETAFEW--HKRKSGNR--FNRSDESEC----SSIFVE---PLRWMTAV 316 (366)
Q Consensus 252 ~~~~~rCrkCR~~l~~~~~i~~--H~~~~~--~~~~~~--~~~~~~~~--~~~~~~~~C----~~~fie---p~~Wm~~~ 316 (366)
.+..++|.+|+..+-.+.++.. --|+++ ...=-| |+-..... ..-..+..| ++||+= -.+|...+
T Consensus 100 ~~~s~~C~~C~e~ii~~r~~~~l~~lPSe~W~el~d~w~CH~~~p~~~s~~tl~PsE~~l~lG~sY~lin~~t~e~~~~~ 179 (348)
T KOG4784|consen 100 EPCSFHCLNCKEEIIGQRSYRSLNELPSENWTELPDCWSCHNDEPKNKSSLTLYPSENELYLGDSYLLINLATGEGVKTI 179 (348)
T ss_pred CCceeEeccCcceEeccchhhhhhhcChhhhhhcCceecccCCccccccccccccCcCceEeeccEEEEEcccccceecc
Confidence 4678999999999977666532 223221 000011 11000000 001223333 378772 34677653
Q ss_pred hcccccceEeCCCCCCCcceeeecc
Q 017789 317 EEGALEGKLSCAHCEARLGYFNWSG 341 (366)
Q Consensus 317 ~~~~~~Gkl~Cp~C~~klG~~~w~G 341 (366)
. ..-++.|-+|.+-||.+...+
T Consensus 180 ~---~~d~~~C~rC~~~lg~~~~~~ 201 (348)
T KOG4784|consen 180 A---GNDRVLCSRCKRCLGLFITKD 201 (348)
T ss_pred C---CCCchhhhhhHhhcCcccccc
Confidence 2 367899999999999996543
No 150
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=24.78 E-value=50 Score=29.29 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=26.1
Q ss_pred CccccCCeEEcCHHhHhcHhh--hhcCCCeEEEE
Q 017789 2 PYLVREHLFIGNISDAADILQ--NGSSEITHMLS 33 (366)
Q Consensus 2 P~~I~~~LylG~~~~a~d~~~--L~~~gIt~Vln 33 (366)
|+...|++|+-++.+- +.+. |++.||+.||-
T Consensus 14 p~l~~P~l~V~si~~I-~~~~~~Lk~~Gik~li~ 46 (168)
T PF09419_consen 14 PSLLLPHLYVPSIRDI-DFEANHLKKKGIKALIF 46 (168)
T ss_pred ccccCCCEEcCChhhC-CcchhhhhhcCceEEEE
Confidence 7788999999888665 5677 99999999874
No 151
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=24.74 E-value=1.5e+02 Score=26.80 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcchHHHHHHH
Q 017789 117 LLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAY 155 (366)
Q Consensus 117 l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AY 155 (366)
+.+.+.++++.|.+++.++ +|++. |.|+|++++..+
T Consensus 23 ~~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~ 59 (196)
T PRK10886 23 LPDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHF 59 (196)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHH
Confidence 3456788888888888887 77764 777887766443
No 152
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=24.40 E-value=74 Score=34.85 Aligned_cols=49 Identities=27% Similarity=0.622 Sum_probs=0.0
Q ss_pred cccccccccceeccccccccCCCCCCCchhhhhhcccCCCCCCCCCCCCceeeeeccccchhhhcccccceEeCCCCCCC
Q 017789 254 PAYRCKKCRRVVALQENVVDHIPGEGETAFEWHKRKSGNRFNRSDESECSSIFVEPLRWMTAVEEGALEGKLSCAHCEAR 333 (366)
Q Consensus 254 ~~~rCrkCR~~l~~~~~i~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~fiep~~Wm~~~~~~~~~Gkl~Cp~C~~k 333 (366)
....|+.|+.++-. ..|+.++. -....|+|.|.-|+..
T Consensus 434 ~~l~C~~Cg~v~~C--------------------------------p~Cd~~lt----------~H~~~~~L~CH~Cg~~ 471 (730)
T COG1198 434 PLLLCRDCGYIAEC--------------------------------PNCDSPLT----------LHKATGQLRCHYCGYQ 471 (730)
T ss_pred ceeecccCCCcccC--------------------------------CCCCcceE----------EecCCCeeEeCCCCCC
Q ss_pred cceeeeccccCC-CCC
Q 017789 334 LGYFNWSGIQCS-CGS 348 (366)
Q Consensus 334 lG~~~w~G~~Cs-CG~ 348 (366)
-. .=.+|+ ||.
T Consensus 472 ~~----~p~~Cp~Cgs 483 (730)
T COG1198 472 EP----IPQSCPECGS 483 (730)
T ss_pred CC----CCCCCCCCCC
No 153
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=24.14 E-value=50 Score=23.19 Aligned_cols=12 Identities=25% Similarity=0.700 Sum_probs=7.2
Q ss_pred eCCCCCCCccee
Q 017789 326 SCAHCEARLGYF 337 (366)
Q Consensus 326 ~Cp~C~~klG~~ 337 (366)
-||.|+.+-=.|
T Consensus 3 PCPfCGg~~~~~ 14 (53)
T TIGR03655 3 PCPFCGGADVYL 14 (53)
T ss_pred CCCCCCCcceee
Confidence 377777665433
No 154
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=24.09 E-value=26 Score=23.84 Aligned_cols=9 Identities=33% Similarity=1.125 Sum_probs=8.0
Q ss_pred EeCCCCCCC
Q 017789 325 LSCAHCEAR 333 (366)
Q Consensus 325 l~Cp~C~~k 333 (366)
..||+|++.
T Consensus 19 ~~CP~Cg~~ 27 (46)
T PF12760_consen 19 FVCPHCGST 27 (46)
T ss_pred CCCCCCCCe
Confidence 779999997
No 155
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=24.02 E-value=96 Score=25.07 Aligned_cols=36 Identities=22% Similarity=0.505 Sum_probs=28.2
Q ss_pred HhCCcEEEEcCCCCcchHHHHHHHHHHhcCCC-HHHHHHHHH
Q 017789 132 RKEGGVLVHCFAGVSRSAAIITAYLMRTEQLS-SEGALESLR 172 (366)
Q Consensus 132 ~~~g~VLVHC~aG~sRS~tvv~AYLm~~~~~s-~~eAl~~v~ 172 (366)
..+++|+=||..| +-++.||+.....+ -.||+.+-.
T Consensus 22 ~~~~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl~las 58 (99)
T cd04445 22 EKDKKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGLMLAS 58 (99)
T ss_pred HHhhccccceecc-----cHHHHHHHHhhcccchHHHHHHHH
Confidence 4467999999888 55779999998875 888876543
No 156
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=24.01 E-value=28 Score=26.17 Aligned_cols=19 Identities=26% Similarity=0.667 Sum_probs=12.2
Q ss_pred ccccccccceeccccccccC
Q 017789 255 AYRCKKCRRVVALQENVVDH 274 (366)
Q Consensus 255 ~~rCrkCR~~l~~~~~i~~H 274 (366)
+||| +|+|.|...+..-.|
T Consensus 3 ifrC-~Cgr~lya~e~~kTk 21 (68)
T PF09082_consen 3 IFRC-DCGRYLYAKEGAKTK 21 (68)
T ss_dssp EEEE-TTS--EEEETT-SEE
T ss_pred EEEe-cCCCEEEecCCccee
Confidence 6899 799999887765544
No 157
>PRK11827 hypothetical protein; Provisional
Probab=23.79 E-value=43 Score=24.56 Aligned_cols=11 Identities=27% Similarity=0.945 Sum_probs=9.5
Q ss_pred eEeCCCCCCCc
Q 017789 324 KLSCAHCEARL 334 (366)
Q Consensus 324 kl~Cp~C~~kl 334 (366)
-|.||.|+.+|
T Consensus 8 ILaCP~ckg~L 18 (60)
T PRK11827 8 IIACPVCNGKL 18 (60)
T ss_pred heECCCCCCcC
Confidence 48999999777
No 158
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=23.41 E-value=1.3e+02 Score=27.62 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCcEEEEcCCCCcchHHHHHHHHHHh
Q 017789 120 YLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRT 159 (366)
Q Consensus 120 ~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AYLm~~ 159 (366)
.|.++++.|-+. .|+|+| .|++||+-++=++-|+-
T Consensus 27 ~~~~a~~~i~~~--~gkv~V---~G~GkSG~Igkk~Aa~L 61 (202)
T COG0794 27 DFVRAVELILEC--KGKVFV---TGVGKSGLIGKKFAARL 61 (202)
T ss_pred HHHHHHHHHHhc--CCcEEE---EcCChhHHHHHHHHHHH
Confidence 355555555443 789987 59999999887766664
No 159
>PF11403 Yeast_MT: Yeast metallothionein; InterPro: IPR022710 Metallothioneins are characterised by an abundance of cysteine residues and a lack of generic secondary structure motifs. This protein functions in primary metal storage, transport and detoxification []. For the first 40 residues in the protein the polypeptide wraps around the metal by forming two large parallel loops separated by a deep cleft containing the metal cluster []. ; PDB: 1AQS_A 1AQR_A 1RJU_V 1FMY_A 1AOO_A 1AQQ_A.
Probab=23.38 E-value=42 Score=21.61 Aligned_cols=8 Identities=38% Similarity=1.194 Sum_probs=3.3
Q ss_pred cccCCCCC
Q 017789 341 GIQCSCGS 348 (366)
Q Consensus 341 G~~CsCG~ 348 (366)
-.+|+||.
T Consensus 33 ddkcpcgn 40 (40)
T PF11403_consen 33 DDKCPCGN 40 (40)
T ss_dssp STT--TT-
T ss_pred CCcCCCCC
Confidence 35788873
No 160
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=23.35 E-value=82 Score=30.21 Aligned_cols=26 Identities=46% Similarity=0.455 Sum_probs=17.7
Q ss_pred CCCcchHHHHHHHHHHhcCCCHHHHHHH
Q 017789 143 AGVSRSAAIITAYLMRTEQLSSEGALES 170 (366)
Q Consensus 143 aG~sRS~tvv~AYLm~~~~~s~~eAl~~ 170 (366)
=|.|||++.+.+-|. .|++.++|.++
T Consensus 165 PG~SRSGaTI~~~ll--lG~~r~~Aaef 190 (270)
T COG1968 165 PGTSRSGATISGGLL--LGLSREAAAEF 190 (270)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 589999876655443 37777776554
No 161
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=23.30 E-value=39 Score=27.16 Aligned_cols=10 Identities=30% Similarity=0.803 Sum_probs=8.6
Q ss_pred CcEEEEcCCC
Q 017789 135 GGVLVHCFAG 144 (366)
Q Consensus 135 g~VLVHC~aG 144 (366)
.+|+|||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 3899999887
No 162
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=23.14 E-value=90 Score=23.99 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 017789 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (366)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (366)
.+|+|+|..|. ||.. ++.+| ...|.+
T Consensus 57 ~~iv~~c~~G~-rs~~-aa~~L-~~~G~~ 82 (95)
T cd01534 57 ARIVLADDDGV-RADM-TASWL-AQMGWE 82 (95)
T ss_pred CeEEEECCCCC-hHHH-HHHHH-HHcCCE
Confidence 48999999994 7743 33334 555653
No 163
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.11 E-value=19 Score=36.63 Aligned_cols=55 Identities=24% Similarity=0.528 Sum_probs=30.4
Q ss_pred CCCCCCceeeeecc--ccchhhhcccccceEeCCCCCCCcc-----------eee-eccccCC-CCCcccccee
Q 017789 297 SDESECSSIFVEPL--RWMTAVEEGALEGKLSCAHCEARLG-----------YFN-WSGIQCS-CGSWITPAFQ 355 (366)
Q Consensus 297 ~~~~~C~~~fiep~--~Wm~~~~~~~~~Gkl~Cp~C~~klG-----------~~~-w~G~~Cs-CG~~v~Pa~~ 355 (366)
+.+..|..+|..+. .||... .--.|+|+.|+.=|- .|+ --|.||. ||..+.|+--
T Consensus 111 ~qT~i~Q~iF~kl~~ng~~se~----tv~qLyC~vc~~fladr~veg~cp~C~yd~ARGDqcd~cG~l~N~~el 180 (567)
T KOG1247|consen 111 TQTEICQDIFSKLYDNGYLSEQ----TVKQLYCEVCDTFLADRFVEGKCPFCGYDDARGDQCDKCGKLVNAAEL 180 (567)
T ss_pred chhHHHHHHhhchhhcCCcccc----eeeeEEehhhcccccchhhhccCCCCCCccccchhhhhhhhhcCHHHh
Confidence 34567888888874 466651 111255544442110 122 2377884 9999877643
No 164
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=23.03 E-value=24 Score=25.72 Aligned_cols=11 Identities=55% Similarity=1.283 Sum_probs=9.3
Q ss_pred cccccccccce
Q 017789 254 PAYRCKKCRRV 264 (366)
Q Consensus 254 ~~~rCrkCR~~ 264 (366)
.++||.|||+.
T Consensus 35 ~I~RC~~CRk~ 45 (59)
T PRK14890 35 IIYRCEKCRKQ 45 (59)
T ss_pred eEeechhHHhc
Confidence 48999999983
No 165
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=22.85 E-value=46 Score=23.89 Aligned_cols=9 Identities=22% Similarity=0.866 Sum_probs=7.2
Q ss_pred EeCCCCCCC
Q 017789 325 LSCAHCEAR 333 (366)
Q Consensus 325 l~Cp~C~~k 333 (366)
+.||.|+.|
T Consensus 5 i~CP~CgnK 13 (55)
T PF14205_consen 5 ILCPICGNK 13 (55)
T ss_pred EECCCCCCc
Confidence 679988865
No 166
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=22.50 E-value=51 Score=22.59 Aligned_cols=8 Identities=25% Similarity=1.078 Sum_probs=4.0
Q ss_pred eEeCCCCC
Q 017789 324 KLSCAHCE 331 (366)
Q Consensus 324 kl~Cp~C~ 331 (366)
.+.||+|+
T Consensus 20 ~~vC~~Cg 27 (52)
T smart00661 20 RFVCRKCG 27 (52)
T ss_pred EEECCcCC
Confidence 34455554
No 167
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=22.35 E-value=48 Score=38.46 Aligned_cols=31 Identities=26% Similarity=0.683 Sum_probs=25.3
Q ss_pred cceEeCCCCCCCcceeeeccccCC-CCCccccce
Q 017789 322 EGKLSCAHCEARLGYFNWSGIQCS-CGSWITPAF 354 (366)
Q Consensus 322 ~Gkl~Cp~C~~klG~~~w~G~~Cs-CG~~v~Pa~ 354 (366)
..+.-| ||++|-=.---+| +|. ||..+.+.+
T Consensus 1540 rQ~~RC-kC~~kyRR~PL~G-~C~kCGg~~ilTV 1571 (1627)
T PRK14715 1540 RQEFRC-KCGAKYRRVPLKG-KCPKCGSKLILTV 1571 (1627)
T ss_pred ccceee-cCCCccccCCCCC-cCcccCCeEEEEE
Confidence 457899 9999988877888 997 999985543
No 168
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=22.27 E-value=38 Score=29.60 Aligned_cols=14 Identities=36% Similarity=0.816 Sum_probs=11.0
Q ss_pred Ccccccccccceec
Q 017789 253 TPAYRCKKCRRVVA 266 (366)
Q Consensus 253 ~~~~rCrkCR~~l~ 266 (366)
+-.|||++|+-.|-
T Consensus 138 g~~YrC~~C~gkL~ 151 (156)
T COG3091 138 GEVYRCGKCGGKLV 151 (156)
T ss_pred cceEEeccCCceEE
Confidence 34899999997763
No 169
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=22.03 E-value=51 Score=19.63 Aligned_cols=10 Identities=20% Similarity=0.740 Sum_probs=7.5
Q ss_pred cceEeCCCCC
Q 017789 322 EGKLSCAHCE 331 (366)
Q Consensus 322 ~Gkl~Cp~C~ 331 (366)
.-...||+|+
T Consensus 14 ~v~f~CPnCG 23 (24)
T PF07754_consen 14 AVPFPCPNCG 23 (24)
T ss_pred CceEeCCCCC
Confidence 3467899997
No 170
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=21.99 E-value=2.1e+02 Score=29.13 Aligned_cols=52 Identities=29% Similarity=0.501 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhCC--cEEEEcCC----------------CCcchHHHHHHHHHHhcCC-----CHHHHHHHHHh
Q 017789 122 DVCFDFIDRRRKEG--GVLVHCFA----------------GVSRSAAIITAYLMRTEQL-----SSEGALESLRQ 173 (366)
Q Consensus 122 ~~~~~fI~~~~~~g--~VLVHC~a----------------G~sRS~tvv~AYLm~~~~~-----s~~eAl~~v~~ 173 (366)
+..++.|++..++| =+-|||.. =+||.+++.++|+++...- .+++-++..++
T Consensus 139 d~~~~~ie~qa~~GVDfmtiH~git~~~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~ 213 (420)
T PF01964_consen 139 DDFFDVIEKQAKDGVDFMTIHCGITRETLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKE 213 (420)
T ss_dssp HHHHHHHHHHHHHT--EEEE-TT--GGGGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCEEEEccchhHHHHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHH
Confidence 55667788888888 58999952 1799999999999997653 45666666664
No 171
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=21.73 E-value=67 Score=27.32 Aligned_cols=9 Identities=33% Similarity=0.951 Sum_probs=5.1
Q ss_pred ceEeCCCCC
Q 017789 323 GKLSCAHCE 331 (366)
Q Consensus 323 Gkl~Cp~C~ 331 (366)
.+..|+.|+
T Consensus 69 ~~~~C~~CG 77 (135)
T PRK03824 69 AVLKCRNCG 77 (135)
T ss_pred eEEECCCCC
Confidence 445566665
No 172
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=21.64 E-value=73 Score=27.92 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=51.6
Q ss_pred HHHHHHHHHHH--hCC-cEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCChhHHHHHHHHHHcCCCC
Q 017789 122 DVCFDFIDRRR--KEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGFKV 198 (366)
Q Consensus 122 ~~~~~fI~~~~--~~g-~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~v~~~Rp~i~pn~~f~~qL~~~e~~~~~~ 198 (366)
..+.++|.... ..+ +|+|-|-.|-+=.-++++|-.+...|+...= --..+.-..++.+..++..+++++.++
T Consensus 10 ~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v-----~~~~~~~~~~~~~~~~~~~~~~~g~~~ 84 (169)
T PF03853_consen 10 RAIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV-----YLVGPPEKLSEDAKQQLEILKKMGIKI 84 (169)
T ss_dssp HHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE-----EEEESSSSTSHHHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE-----EEEeccccCCHHHHHHHHHHHhcCCcE
Confidence 34556676666 334 8999999998888788888888887876321 112334577899999999999998765
Q ss_pred CC
Q 017789 199 NR 200 (366)
Q Consensus 199 ~~ 200 (366)
-.
T Consensus 85 ~~ 86 (169)
T PF03853_consen 85 IE 86 (169)
T ss_dssp ES
T ss_pred ee
Confidence 43
No 173
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=21.64 E-value=77 Score=22.89 Aligned_cols=20 Identities=25% Similarity=0.793 Sum_probs=13.9
Q ss_pred eCCCCCCCcceeeeccccCC-CCCcc
Q 017789 326 SCAHCEARLGYFNWSGIQCS-CGSWI 350 (366)
Q Consensus 326 ~Cp~C~~klG~~~w~G~~Cs-CG~~v 350 (366)
.||+|+ .|.. ..+|+ ||.-.
T Consensus 7 ~C~~Cg----vYTL-k~~CP~CG~~t 27 (56)
T PRK13130 7 KCPKCG----VYTL-KEICPVCGGKT 27 (56)
T ss_pred ECCCCC----CEEc-cccCcCCCCCC
Confidence 588774 6777 55886 88654
No 174
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=21.50 E-value=88 Score=28.48 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHh
Q 017789 152 ITAYLMRTEQLSSEGALESLRQ 173 (366)
Q Consensus 152 v~AYLm~~~~~s~~eAl~~v~~ 173 (366)
+=+.||..+|++-+||++++|+
T Consensus 150 AKglLM~~~g~sE~EAy~~lR~ 171 (194)
T COG3707 150 AKGLLMKRRGLSEEEAYKLLRR 171 (194)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 3466999999999999999985
No 175
>PRK12495 hypothetical protein; Provisional
Probab=21.47 E-value=47 Score=30.80 Aligned_cols=14 Identities=21% Similarity=0.684 Sum_probs=7.7
Q ss_pred ccceEeCCCCCCCc
Q 017789 321 LEGKLSCAHCEARL 334 (366)
Q Consensus 321 ~~Gkl~Cp~C~~kl 334 (366)
+.|...||.|+..+
T Consensus 55 ~pG~~~Cp~CQ~~~ 68 (226)
T PRK12495 55 HDGQEFCPTCQQPV 68 (226)
T ss_pred CCCeeECCCCCCcc
Confidence 35556666665444
No 176
>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=21.19 E-value=94 Score=26.67 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=16.5
Q ss_pred CCcccccccccceeccccc
Q 017789 252 RTPAYRCKKCRRVVALQEN 270 (366)
Q Consensus 252 ~~~~~rCrkCR~~l~~~~~ 270 (366)
....|.|.-|...||.++.
T Consensus 39 ~~GiY~c~~cg~pLF~S~~ 57 (140)
T COG0229 39 EKGIYVCIVCGEPLFSSED 57 (140)
T ss_pred CCceEEeecCCCccccccc
Confidence 4569999999999999865
No 177
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=21.16 E-value=47 Score=33.83 Aligned_cols=44 Identities=18% Similarity=0.459 Sum_probs=27.9
Q ss_pred eeeeccccchhhhcccccceEeCCCCCCCcceeeeccccCC-CCCcc
Q 017789 305 IFVEPLRWMTAVEEGALEGKLSCAHCEARLGYFNWSGIQCS-CGSWI 350 (366)
Q Consensus 305 ~fiep~~Wm~~~~~~~~~Gkl~Cp~C~~klG~~~w~G~~Cs-CG~~v 350 (366)
+-||.+.=.+- .. ...-+-.||.|+.++=|--=.|-+|. ||+-.
T Consensus 333 ~n~ek~~v~~l-~~-~~~~~p~Cp~Cg~~m~S~G~~g~rC~kCg~~~ 377 (421)
T COG1571 333 LNLEKFQVLKL-AR-YERVNPVCPRCGGRMKSAGRNGFRCKKCGTRA 377 (421)
T ss_pred eeEEEEEEEEe-ee-eEEcCCCCCccCCchhhcCCCCcccccccccC
Confidence 55666543332 22 34556689999977655443477998 99765
No 178
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=21.15 E-value=52 Score=22.17 Aligned_cols=11 Identities=36% Similarity=1.011 Sum_probs=8.7
Q ss_pred ccceEeCCCCC
Q 017789 321 LEGKLSCAHCE 331 (366)
Q Consensus 321 ~~Gkl~Cp~C~ 331 (366)
-+|+++||.|+
T Consensus 31 k~g~~~Cv~C~ 41 (41)
T PF06677_consen 31 KDGKIYCVSCG 41 (41)
T ss_pred cCCCEECCCCC
Confidence 36789999985
No 179
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=20.71 E-value=47 Score=24.72 Aligned_cols=11 Identities=18% Similarity=0.748 Sum_probs=7.5
Q ss_pred ceEeCCCCCCC
Q 017789 323 GKLSCAHCEAR 333 (366)
Q Consensus 323 Gkl~Cp~C~~k 333 (366)
++..||||+.+
T Consensus 3 ~~~kCpKCgn~ 13 (68)
T COG3478 3 NAFKCPKCGNT 13 (68)
T ss_pred ccccCCCcCCc
Confidence 34459999864
No 180
>PHA02325 hypothetical protein
Probab=20.61 E-value=54 Score=24.33 Aligned_cols=16 Identities=50% Similarity=1.126 Sum_probs=12.4
Q ss_pred eCCCCCCCc--ceeeecc
Q 017789 326 SCAHCEARL--GYFNWSG 341 (366)
Q Consensus 326 ~Cp~C~~kl--G~~~w~G 341 (366)
.||+|+|+- |---|+|
T Consensus 5 ~CPkC~A~WldgqhYWsg 22 (72)
T PHA02325 5 ICPKCGARWLDGQHYWSG 22 (72)
T ss_pred ccCccCCEeEcceeeecc
Confidence 599999974 6677875
No 181
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=20.49 E-value=41 Score=21.67 Aligned_cols=9 Identities=33% Similarity=0.907 Sum_probs=4.2
Q ss_pred eCCCCCCCc
Q 017789 326 SCAHCEARL 334 (366)
Q Consensus 326 ~Cp~C~~kl 334 (366)
+||.|++.|
T Consensus 2 fC~~CG~~l 10 (34)
T PF14803_consen 2 FCPQCGGPL 10 (34)
T ss_dssp B-TTT--B-
T ss_pred ccccccChh
Confidence 599999887
No 182
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=20.15 E-value=42 Score=33.46 Aligned_cols=36 Identities=31% Similarity=0.855 Sum_probs=28.0
Q ss_pred CCCCceeeeecc-------ccchhhh-----cccccceEeCCCCCCCc
Q 017789 299 ESECSSIFVEPL-------RWMTAVE-----EGALEGKLSCAHCEARL 334 (366)
Q Consensus 299 ~~~C~~~fiep~-------~Wm~~~~-----~~~~~Gkl~Cp~C~~kl 334 (366)
...|+.-|-.|| +|-..-. +-|+.||-.||-|.+|-
T Consensus 303 ~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 303 EPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred CCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 468999999999 5766522 24689999999999873
No 183
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=20.13 E-value=2.8e+02 Score=28.16 Aligned_cols=37 Identities=27% Similarity=0.471 Sum_probs=28.4
Q ss_pred EEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHhhCC
Q 017789 138 LVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCE 176 (366)
Q Consensus 138 LVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~v~~~Rp 176 (366)
..||.+ .+.++-+ +.++|...++++.+|++.+.+.-.
T Consensus 55 ~~~Cf~-Cg~~Gd~-i~fv~~~~~~sf~eA~~~La~~~g 91 (415)
T TIGR01391 55 FYHCFG-CGAGGDA-IKFLMEIEGISFVEAVEELAKRAG 91 (415)
T ss_pred cEEECC-CCCCCCH-HHHHHHHhCCCHHHHHHHHHHHcC
Confidence 478873 4555544 689999999999999999977543
No 184
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=20.03 E-value=1e+02 Score=23.70 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=17.5
Q ss_pred hCC-cEEEEcCCCCcchHHHHHHHHHHhcCC
Q 017789 133 KEG-GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (366)
Q Consensus 133 ~~g-~VLVHC~aG~sRS~tvv~AYLm~~~~~ 162 (366)
... +|+|+|..| .||.. ++.++...|.
T Consensus 59 ~~~~~ivv~c~~g-~~s~~--~~~~l~~~G~ 86 (103)
T cd01447 59 AEDKPFVFYCASG-WRSAL--AGKTLQDMGL 86 (103)
T ss_pred CCCCeEEEEcCCC-CcHHH--HHHHHHHcCh
Confidence 344 899999988 57643 3455555554
No 185
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=20.02 E-value=2.8e+02 Score=22.00 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=12.6
Q ss_pred cEEEEcCCCCcchHHH
Q 017789 136 GVLVHCFAGVSRSAAI 151 (366)
Q Consensus 136 ~VLVHC~aG~sRS~tv 151 (366)
.|+|||..|-.||+..
T Consensus 68 ~iv~~C~~~g~rs~~a 83 (113)
T cd01443 68 LAIFYCGSSQGRGPRA 83 (113)
T ss_pred EEEEECCCCCcccHHH
Confidence 7999999866787544
No 186
>PRK06835 DNA replication protein DnaC; Validated
Probab=20.00 E-value=52 Score=32.40 Aligned_cols=23 Identities=43% Similarity=1.132 Sum_probs=0.0
Q ss_pred ccceEeCCCCCCCcceeeeccccCCC
Q 017789 321 LEGKLSCAHCEARLGYFNWSGIQCSC 346 (366)
Q Consensus 321 ~~Gkl~Cp~C~~klG~~~w~G~~CsC 346 (366)
++-+-.||+|+-. |-+ .|.+|+|
T Consensus 95 l~~~y~Cp~C~dt-G~i--~~~~C~C 117 (329)
T PRK06835 95 LEMKYTCPKCKDT-GFI--NGKKCSC 117 (329)
T ss_pred cCCCCCCCCCCCC-CCc--CCccccc
Done!