BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017790
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 44.7 bits (104), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 235 CCSVRMIFKSYRVGVDERDISMDS--SYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEE 292
C V+ +FK R+GV + +D +LQ +L T+P VF+ GKHIGG +
Sbjct: 32 CTEVKTLFK--RLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTD 89
Query: 293 IKQLNETGDLAMLL 306
+LN GDL ++L
Sbjct: 90 TVKLNRKGDLELML 103
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 263 ELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETGDLAMLLK 307
E+QD L T+P V+I GKHIGG +++ L + G LA +LK
Sbjct: 61 EIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 105
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 263 ELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETGDLAMLLK 307
E+QD L T+P V+I GKHIGG +++ L + G LA +LK
Sbjct: 64 EIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 108
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 263 ELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETGDLAMLLK 307
E+QD L T+P V+I GKHIGG +++ L + G LA +LK
Sbjct: 81 EIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 125
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 235 CCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIK 294
C + + +E D S R E+Q+ G T PQ+FI H+GG +++
Sbjct: 19 CARAKALLARKGAEFNEIDASATPELRAEMQERSGRN----TFPQIFIGSVHVGGCDDLY 74
Query: 295 QLNETGDLAMLLK 307
L + G L LLK
Sbjct: 75 ALEDEGKLDSLLK 87
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 241 IFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETG 300
I S V + DI D R+ L+ T PQ+++RG +GG + +K+L + G
Sbjct: 39 ILNSTGVEYETFDILEDEEVRQGLKTF----SNWPTYPQLYVRGDLVGGLDIVKELKDNG 94
Query: 301 DLAMLLKG 308
+L +LKG
Sbjct: 95 ELLPILKG 102
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 235 CCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIK 294
C + + S V E I +++ R+E+ G T+PQ+FI +HIGG +++
Sbjct: 14 CHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSG----RTTVPQIFIDAQHIGGYDDLY 69
Query: 295 QLNETGDLAMLLK 307
L+ G L LLK
Sbjct: 70 ALDARGGLDPLLK 82
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 248 GVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETGDLAMLLK 307
GV +++ +D + K ++++ G+ T+PQ+FI +HIGG +++ L+ G L LLK
Sbjct: 25 GVSFQELPIDGNAAKR-EEMIKRSGRT-TVPQIFIDAQHIGGYDDLYALDARGGLDPLLK 82
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 36.6 bits (83), Expect = 0.021, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 241 IFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETG 300
I S V + DI D R+ L+ T PQ++++G+ +GG + +K+L E G
Sbjct: 41 ILNSTGVEYETFDILEDEEVRQGLK----AYSNWPTYPQLYVKGELVGGLDIVKELKENG 96
Query: 301 DLAMLLKG 308
+L +L+G
Sbjct: 97 ELLPILRG 104
>pdb|3LGC|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis
pdb|3MSZ|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
pdb|3MSZ|B Chain B, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
Length = 89
Score = 36.6 bits (83), Expect = 0.025, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 235 CCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAI----TLPQVFIRGKHIGGA 290
C + F+ + DE I D + R + D GK I T+PQ+FI +HIGG
Sbjct: 17 CVWAKQWFEENNIAFDETIID-DYAQRSKFYDEXNQSGKVIFPISTVPQIFIDDEHIGGF 75
Query: 291 EEIK 294
E+K
Sbjct: 76 TELK 79
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 36.6 bits (83), Expect = 0.026, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 238 VRMIFKSYRVGVDERDISMDS--SYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQ 295
V+ +FK R+ VD + +D + ++Q +L T+P VFI GKHIGG + +
Sbjct: 34 VKSLFK--RLNVDPLVVELDELGAQGPQIQKVLERLTGQHTVPNVFIGGKHIGGCTDTVK 91
Query: 296 LNETGDLAMLL 306
L G+L LL
Sbjct: 92 LYRKGELEPLL 102
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 35.8 bits (81), Expect = 0.043, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 258 SSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETGDLAMLLK 307
+++ E+QD L A T+P+VFI IGG+ ++ L ++G+L LK
Sbjct: 50 TNHTNEIQDYLQQLTGARTVPRVFIGKDSIGGSSDLVSLQQSGELLTRLK 99
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 35.0 bits (79), Expect = 0.073, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 248 GVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETGDLAMLLK 307
GV DI +S R+E+ + G+ T PQ+FI H+GG +++ L G L LL+
Sbjct: 30 GVKYTDIDASTSLRQEM--VQRANGRN-TFPQIFIGDYHVGGCDDLYALENKGKLDSLLQ 86
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 35.0 bits (79), Expect = 0.075, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 276 TLPQVFIRGKHIGGAEEIKQLNETGDLAMLLKGFPVVNAV 315
T+PQV++ G+ +GG + + Q+++ GDL LK + +A+
Sbjct: 76 TIPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLGIHSAL 115
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 246 RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETGDLAML 305
R GV+ ++ +D GK +LPQ+FI +HIGG ++I L+ G L L
Sbjct: 38 RKGVEFQEYCIDGDNEAREAMAARANGKR-SLPQIFIDDQHIGGCDDIYALDGAGKLDPL 96
Query: 306 L 306
L
Sbjct: 97 L 97
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 235 CCSVRMIFKSYRVGVDERDISMDS-SYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEI 293
C + +F + + V+ + + +D Y + QD L T+P++F+ G IGGA +
Sbjct: 40 CTMAKKLF--HDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDT 97
Query: 294 KQLNETGDLAMLL 306
+L++ G L L+
Sbjct: 98 HRLHKEGKLLPLV 110
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 258 SSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETGDLAMLLK 307
+++ E+QD L A T+P+VFI IGG ++ L ++G+L LK
Sbjct: 51 TNHTNEIQDYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLK 100
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 235 CCSVRMIFKSYRVGVDERDISMDS-SYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEI 293
C + +F + + V+ + + +D Y + QD L T+P++F+ G IGGA +
Sbjct: 62 CTMAKKLF--HDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDT 119
Query: 294 KQLNETGDLAMLL 306
+L++ G L L+
Sbjct: 120 HRLHKEGKLLPLV 132
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 19/20 (95%)
Query: 276 TLPQVFIRGKHIGGAEEIKQ 295
T+PQVFI GKHIGG++++++
Sbjct: 219 TVPQVFIGGKHIGGSDDLEK 238
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 235 CCSVRMIFKSYRVGVDERDISMDS-SYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEI 293
C + +F + + V+ + + +D Y + QD L T+P++F+ G IGGA +
Sbjct: 48 CTMAKKLF--HDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDT 105
Query: 294 KQLNETGDLAMLL 306
+L++ G L L+
Sbjct: 106 HRLHKEGKLLPLV 118
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 31.6 bits (70), Expect = 0.74, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 258 SSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETGDLAMLLK 307
+S E+QD L A T+P+VFI + IGG +++ +++ G+L L+
Sbjct: 50 TSDTNEIQDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQ 99
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 31.2 bits (69), Expect = 1.00, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 246 RVGVDERDISMDS-SYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETGDLAM 304
+VG + + +D S +LQ L T+P VFI GK IGG + + + ++ +L
Sbjct: 42 QVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLP 101
Query: 305 LLK 307
LL+
Sbjct: 102 LLQ 104
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 246 RVGVDERDISMDS-SYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETGDLAM 304
+VG + + +D S +LQ L T+P VFI GK IGG + + + ++ +L
Sbjct: 43 QVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLP 102
Query: 305 LLK 307
LL+
Sbjct: 103 LLQ 105
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 276 TLPQVFIRGKHIGGAEEIKQLNETGDLAMLLK 307
T+PQ+++ + IGG + I + +G+LA LL+
Sbjct: 74 TIPQLYVNKEFIGGCDVITSMARSGELADLLE 105
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 264 LQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETGDLAMLL 306
+Q L K T+PQ+F+RGK IG ++ + + +LA ++
Sbjct: 59 IQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIV 101
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 264 LQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETGDLAMLL 306
+Q L K T+PQ+F+RGK IG ++ + + +LA ++
Sbjct: 59 IQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIV 101
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 264 LQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETGDLAMLL 306
+Q L K T+PQ+F+RGK IG ++ + + +LA ++
Sbjct: 59 IQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIV 101
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 276 TLPQVFIRGKHIGGAEEIK 294
T+P ++I GKHIGG ++++
Sbjct: 74 TVPNIYINGKHIGGNDDLQ 92
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 29.3 bits (64), Expect = 3.7, Method: Composition-based stats.
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 276 TLPQVFIRGKHIGGAEEIK 294
T+P ++I GKHIGG ++++
Sbjct: 82 TVPNIYINGKHIGGNDDLQ 100
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 276 TLPQVFIRGKHIGGAEEIKQLNETGDLAMLLK 307
T PQ+++ G+ +GG + + ++ + G+L L+K
Sbjct: 90 TFPQLWVDGELVGGCDIVIEMYQRGELQQLIK 121
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 264 LQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETGDLAMLLK 307
+Q++L T+P +F+ H+GG ++ Q ++G L LL+
Sbjct: 58 VQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 101
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 276 TLPQVFIRGKHIGGAEEIK 294
T+P ++I GKHIGG ++++
Sbjct: 318 TVPNIYINGKHIGGNDDLQ 336
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 28.5 bits (62), Expect = 6.4, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 276 TLPQVFIRGKHIGGAEEIKQLNETGDLAMLLK 307
T PQ+++ G+ +GG + + ++ + G+L L+K
Sbjct: 70 TFPQLWVDGELVGGCDIVIEMYQRGELQQLIK 101
>pdb|2IJD|1 Chain 1, Crystal Structure Of The Poliovirus Precursor Protein 3cd
pdb|2IJD|2 Chain 2, Crystal Structure Of The Poliovirus Precursor Protein 3cd
Length = 644
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 151 DACGSVKVSPSTTKPLWKHLSEESLLSKMDPNVASSYRRALSSRQLG 197
+A K+ PS +++ + E ++L+K DP + + + A+ S+ +G
Sbjct: 201 NAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVG 247
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 262 KELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETGDL 302
+ELQ+ + + T+P + + G GG EEIK+L+ G L
Sbjct: 56 EELQEYIKLVTGRGTVPNLLVNGVSRGGNEEIKKLHTQGKL 96
>pdb|3OL6|A Chain A, Poliovirus Polymerase Elongation Complex
pdb|3OL6|E Chain E, Poliovirus Polymerase Elongation Complex
pdb|3OL6|I Chain I, Poliovirus Polymerase Elongation Complex
pdb|3OL6|M Chain M, Poliovirus Polymerase Elongation Complex
pdb|3OL7|A Chain A, Poliovirus Polymerase Elongation Complex With Ctp
pdb|3OL7|E Chain E, Poliovirus Polymerase Elongation Complex With Ctp
pdb|3OL7|I Chain I, Poliovirus Polymerase Elongation Complex With Ctp
pdb|3OL7|M Chain M, Poliovirus Polymerase Elongation Complex With Ctp
pdb|3OL8|A Chain A, Poliovirus Polymerase Elongation Complex With Ctp-Mn
pdb|3OL8|E Chain E, Poliovirus Polymerase Elongation Complex With Ctp-Mn
pdb|3OL8|I Chain I, Poliovirus Polymerase Elongation Complex With Ctp-Mn
pdb|3OL8|M Chain M, Poliovirus Polymerase Elongation Complex With Ctp-Mn
pdb|3OL9|A Chain A, Poliovirus Polymerase Elongation Complex With 3'-Deoxy-Ctp
pdb|3OL9|E Chain E, Poliovirus Polymerase Elongation Complex With 3'-Deoxy-Ctp
pdb|3OL9|I Chain I, Poliovirus Polymerase Elongation Complex With 3'-Deoxy-Ctp
pdb|3OL9|M Chain M, Poliovirus Polymerase Elongation Complex With 3'-Deoxy-Ctp
pdb|3OLA|A Chain A, Poliovirus Polymerase Elongation Complex With 2'-Deoxy-Ctp
pdb|3OLA|E Chain E, Poliovirus Polymerase Elongation Complex With 2'-Deoxy-Ctp
pdb|3OLA|I Chain I, Poliovirus Polymerase Elongation Complex With 2'-Deoxy-Ctp
pdb|3OLA|M Chain M, Poliovirus Polymerase Elongation Complex With 2'-Deoxy-Ctp
pdb|3OLB|A Chain A, Poliovirus Polymerase Elongation Complex With
2',3'-Dideoxy-Ctp
pdb|3OLB|E Chain E, Poliovirus Polymerase Elongation Complex With
2',3'-Dideoxy-Ctp
pdb|3OLB|I Chain I, Poliovirus Polymerase Elongation Complex With
2',3'-Dideoxy-Ctp
pdb|3OLB|M Chain M, Poliovirus Polymerase Elongation Complex With
2',3'-Dideoxy-Ctp
Length = 471
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 151 DACGSVKVSPSTTKPLWKHLSEESLLSKMDPNVASSYRRALSSRQLG 197
+A K+ PS +++ + E ++L+K DP + + + A+ S+ +G
Sbjct: 18 NAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVG 64
>pdb|1RDR|A Chain A, Poliovirus 3d Polymerase
Length = 461
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 151 DACGSVKVSPSTTKPLWKHLSEESLLSKMDPNVASSYRRALSSRQLG 197
+A K+ PS +++ + E ++L+K DP + + + A+ S+ +G
Sbjct: 18 NAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVG 64
>pdb|1RA6|A Chain A, Poliovirus Polymerase Full Length Apo Structure
pdb|1RA7|A Chain A, Poliovirus Polymerase With Gtp
pdb|2ILY|A Chain A, Crystal Structure Of Poliovirus Polymerase Complexed With
Atp And Mg2+
pdb|2ILZ|A Chain A, Crystal Structure Of Poliovirus Polymerase Complexed With
Gtp And Mn2+
pdb|2IM0|A Chain A, Crystal Structure Of Poliovirus Polymerase Complexed With
Ctp And Mg2+
pdb|2IM1|A Chain A, Crystal Structure Of Poliovirus Polymerase Complexed With
Ctp And Mn2+
pdb|2IM2|A Chain A, Crystal Structure Of Poliovirus Polymerase Complexed With
Utp And Mg2+
pdb|2IM3|A Chain A, Crystal Structure Of Poliovirus Polymerase Complexed With
Utp And Mn2+
Length = 461
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 151 DACGSVKVSPSTTKPLWKHLSEESLLSKMDPNVASSYRRALSSRQLG 197
+A K+ PS +++ + E ++L+K DP + + + A+ S+ +G
Sbjct: 18 NAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVG 64
>pdb|1TQL|A Chain A, Poliovirus Polymerase G1a Mutant
Length = 461
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 151 DACGSVKVSPSTTKPLWKHLSEESLLSKMDPNVASSYRRALSSRQLG 197
+A K+ PS +++ + E ++L+K DP + + + A+ S+ +G
Sbjct: 18 NAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVG 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,761,003
Number of Sequences: 62578
Number of extensions: 344258
Number of successful extensions: 785
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 42
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)