Query 017790
Match_columns 366
No_of_seqs 239 out of 1439
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 03:27:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2824 Glutaredoxin-related p 100.0 2.8E-67 6.1E-72 500.4 19.3 262 75-364 1-280 (281)
2 cd03031 GRX_GRX_like Glutaredo 100.0 9.1E-51 2E-55 359.0 16.6 144 217-360 1-147 (147)
3 cd03030 GRX_SH3BGR Glutaredoxi 99.9 9E-24 2E-28 173.8 9.7 90 218-307 2-91 (92)
4 TIGR02189 GlrX-like_plant Glut 99.8 4.2E-20 9E-25 152.6 10.1 93 212-311 4-96 (99)
5 PRK10824 glutaredoxin-4; Provi 99.8 4.8E-20 1E-24 157.6 10.4 95 212-311 11-105 (115)
6 TIGR00365 monothiol glutaredox 99.8 1E-19 2.2E-24 149.8 11.6 89 213-306 9-97 (97)
7 PHA03050 glutaredoxin; Provisi 99.8 7.1E-19 1.5E-23 148.1 10.8 90 213-312 10-105 (108)
8 cd03028 GRX_PICOT_like Glutare 99.8 2.2E-18 4.7E-23 139.3 10.5 86 213-303 5-90 (90)
9 TIGR02181 GRX_bact Glutaredoxi 99.7 7.2E-18 1.6E-22 131.1 9.8 79 218-306 1-79 (79)
10 KOG1752 Glutaredoxin and relat 99.7 6.8E-18 1.5E-22 142.2 9.1 93 212-311 10-102 (104)
11 PRK10638 glutaredoxin 3; Provi 99.7 1.9E-17 4.1E-22 131.0 11.0 82 216-307 2-83 (83)
12 PTZ00062 glutaredoxin; Provisi 99.7 2E-17 4.4E-22 153.7 9.5 136 162-308 61-200 (204)
13 COG0278 Glutaredoxin-related p 99.7 1.3E-16 2.9E-21 133.8 9.5 90 212-309 11-104 (105)
14 cd03418 GRX_GRXb_1_3_like Glut 99.7 2.9E-16 6.2E-21 120.1 10.2 74 217-300 1-75 (75)
15 cd03027 GRX_DEP Glutaredoxin ( 99.7 3.1E-16 6.7E-21 120.9 9.5 73 216-298 1-73 (73)
16 TIGR02180 GRX_euk Glutaredoxin 99.6 9.7E-16 2.1E-20 118.5 8.0 82 218-306 1-84 (84)
17 cd03419 GRX_GRXh_1_2_like Glut 99.6 6.8E-15 1.5E-19 113.8 8.9 79 217-305 1-82 (82)
18 COG0695 GrxC Glutaredoxin and 99.6 1.2E-14 2.5E-19 116.2 8.7 78 217-302 2-79 (80)
19 cd02066 GRX_family Glutaredoxi 99.5 4.1E-14 8.8E-19 104.4 9.7 72 217-298 1-72 (72)
20 cd03029 GRX_hybridPRX5 Glutare 99.5 3.6E-14 7.9E-19 108.9 9.2 70 217-297 2-71 (72)
21 PF04908 SH3BGR: SH3-binding, 99.5 2.6E-14 5.6E-19 119.7 8.4 91 217-307 2-97 (99)
22 TIGR02190 GlrX-dom Glutaredoxi 99.5 6.1E-14 1.3E-18 110.3 10.1 76 211-297 3-78 (79)
23 KOG0911 Glutaredoxin-related p 99.5 5.1E-14 1.1E-18 132.5 10.1 91 211-309 134-227 (227)
24 TIGR02183 GRXA Glutaredoxin, G 99.5 1.3E-13 2.8E-18 110.6 9.9 75 218-300 2-81 (86)
25 PRK11200 grxA glutaredoxin 1; 99.5 1.6E-13 3.4E-18 108.9 10.0 75 217-299 2-81 (85)
26 PRK12759 bifunctional gluaredo 99.4 9.5E-13 2.1E-17 133.1 11.1 88 216-312 2-94 (410)
27 PF00462 Glutaredoxin: Glutare 99.4 1.9E-12 4.2E-17 96.2 8.7 60 218-287 1-60 (60)
28 TIGR02194 GlrX_NrdH Glutaredox 99.1 2E-10 4.4E-15 88.6 7.5 64 218-292 1-65 (72)
29 PRK10329 glutaredoxin-like pro 99.1 4.6E-10 1E-14 89.8 9.2 65 217-292 2-66 (81)
30 TIGR02196 GlrX_YruB Glutaredox 98.9 8.8E-09 1.9E-13 76.4 9.5 66 217-292 1-66 (74)
31 cd02976 NrdH NrdH-redoxin (Nrd 98.9 2.3E-08 4.9E-13 74.1 9.3 66 217-292 1-66 (73)
32 TIGR02200 GlrX_actino Glutared 98.6 5.6E-07 1.2E-11 68.2 9.5 67 217-292 1-68 (77)
33 cd02973 TRX_GRX_like Thioredox 98.3 2.7E-06 5.9E-11 63.7 6.6 59 217-289 2-65 (67)
34 KOG4023 Uncharacterized conser 98.2 1.9E-06 4.2E-11 72.8 5.9 95 217-311 3-101 (108)
35 cd03041 GST_N_2GST_N GST_N fam 98.0 4.6E-05 1E-09 59.3 9.0 71 218-298 2-74 (77)
36 cd00570 GST_N_family Glutathio 97.9 4.4E-05 9.6E-10 54.8 6.7 68 219-296 2-69 (71)
37 cd03040 GST_N_mPGES2 GST_N fam 97.9 0.00012 2.5E-09 56.3 8.8 69 217-298 1-73 (77)
38 cd03037 GST_N_GRX2 GST_N famil 97.8 0.0001 2.2E-09 55.9 7.9 68 219-298 2-70 (71)
39 cd03055 GST_N_Omega GST_N fami 97.5 0.00068 1.5E-08 54.3 8.2 75 212-297 13-88 (89)
40 cd03059 GST_N_SspA GST_N famil 97.4 0.00083 1.8E-08 50.5 7.4 70 218-298 1-70 (73)
41 cd03036 ArsC_like Arsenate Red 97.4 0.00025 5.4E-09 59.7 4.9 46 218-269 1-46 (111)
42 cd02977 ArsC_family Arsenate R 97.3 0.0003 6.5E-09 58.0 4.7 47 218-270 1-47 (105)
43 TIGR00411 redox_disulf_1 small 97.2 0.002 4.3E-08 49.3 8.2 55 217-285 2-62 (82)
44 PRK01655 spxA transcriptional 97.2 0.00076 1.6E-08 58.7 6.1 46 218-269 2-47 (131)
45 cd03051 GST_N_GTT2_like GST_N 97.2 0.0013 2.7E-08 49.2 6.4 68 219-296 2-72 (74)
46 cd03060 GST_N_Omega_like GST_N 97.2 0.0021 4.5E-08 48.9 7.4 66 219-295 2-68 (71)
47 PF05768 DUF836: Glutaredoxin- 97.0 0.0054 1.2E-07 48.7 9.0 53 217-284 1-57 (81)
48 cd03045 GST_N_Delta_Epsilon GS 97.0 0.0031 6.7E-08 47.7 7.3 68 219-296 2-71 (74)
49 PF13417 GST_N_3: Glutathione 97.0 0.0021 4.5E-08 49.6 6.2 68 220-298 1-68 (75)
50 TIGR01617 arsC_related transcr 97.0 0.0017 3.6E-08 55.0 5.7 46 218-269 1-46 (117)
51 cd03056 GST_N_4 GST_N family, 97.0 0.0045 9.8E-08 46.3 7.4 67 219-295 2-70 (73)
52 cd03035 ArsC_Yffb Arsenate Red 96.9 0.0014 3E-08 55.1 5.0 46 218-269 1-46 (105)
53 cd03032 ArsC_Spx Arsenate Redu 96.9 0.0022 4.9E-08 54.1 6.1 46 218-269 2-47 (115)
54 PRK12559 transcriptional regul 96.8 0.0021 4.5E-08 56.2 5.5 46 218-269 2-47 (131)
55 PRK13344 spxA transcriptional 96.8 0.0023 5E-08 56.0 5.6 46 218-269 2-47 (132)
56 cd03054 GST_N_Metaxin GST_N fa 96.8 0.011 2.4E-07 44.9 8.7 60 227-298 11-70 (72)
57 PHA02125 thioredoxin-like prot 96.7 0.0078 1.7E-07 46.8 7.0 55 218-287 2-56 (75)
58 cd03033 ArsC_15kD Arsenate Red 96.5 0.0046 1E-07 52.8 5.2 46 218-269 2-47 (113)
59 cd03076 GST_N_Pi GST_N family, 96.4 0.021 4.5E-07 43.9 7.7 69 218-297 2-70 (73)
60 KOG3029 Glutathione S-transfer 96.3 0.015 3.3E-07 57.8 7.9 84 216-312 89-178 (370)
61 cd03042 GST_N_Zeta GST_N famil 96.2 0.021 4.6E-07 42.7 6.6 60 233-296 10-71 (73)
62 cd03026 AhpF_NTD_C TRX-GRX-lik 96.1 0.017 3.8E-07 47.0 6.3 58 217-288 15-77 (89)
63 PLN03165 chaperone protein dna 96.1 0.0054 1.2E-07 52.9 3.4 51 314-364 40-93 (111)
64 cd03039 GST_N_Sigma_like GST_N 96.0 0.032 7E-07 42.2 6.8 68 219-296 2-69 (72)
65 cd03053 GST_N_Phi GST_N family 96.0 0.046 9.9E-07 41.5 7.7 71 218-298 2-74 (76)
66 cd03058 GST_N_Tau GST_N family 95.8 0.052 1.1E-06 41.3 7.5 70 219-298 2-71 (74)
67 TIGR00412 redox_disulf_2 small 95.8 0.041 8.8E-07 43.1 6.8 54 218-287 3-60 (76)
68 cd03052 GST_N_GDAP1 GST_N fami 95.8 0.042 9.1E-07 42.6 6.9 69 218-296 1-71 (73)
69 COG1393 ArsC Arsenate reductas 95.7 0.019 4.1E-07 49.6 5.2 47 217-269 2-48 (117)
70 cd03061 GST_N_CLIC GST_N famil 95.6 0.11 2.4E-06 43.1 9.0 76 218-298 6-83 (91)
71 cd02975 PfPDO_like_N Pyrococcu 95.4 0.063 1.4E-06 45.0 7.2 52 217-282 24-81 (113)
72 cd03034 ArsC_ArsC Arsenate Red 95.4 0.029 6.3E-07 47.4 5.0 46 218-269 1-46 (112)
73 cd03080 GST_N_Metaxin_like GST 95.2 0.2 4.4E-06 38.4 9.0 69 218-298 2-71 (75)
74 cd03048 GST_N_Ure2p_like GST_N 95.2 0.11 2.5E-06 40.1 7.5 69 218-297 2-75 (81)
75 cd03049 GST_N_3 GST_N family, 95.2 0.078 1.7E-06 40.1 6.4 67 219-296 2-71 (73)
76 PF13192 Thioredoxin_3: Thiore 95.1 0.15 3.2E-06 39.8 8.0 51 231-290 9-65 (76)
77 TIGR00014 arsC arsenate reduct 95.1 0.039 8.5E-07 46.8 5.0 46 218-269 1-46 (114)
78 PRK10387 glutaredoxin 2; Provi 95.0 0.11 2.3E-06 46.7 7.9 70 218-299 1-71 (210)
79 PRK10026 arsenate reductase; P 95.0 0.043 9.4E-07 49.0 5.3 48 216-269 2-49 (141)
80 TIGR01616 nitro_assoc nitrogen 95.0 0.044 9.6E-07 47.8 5.1 47 217-269 2-48 (126)
81 cd03038 GST_N_etherase_LigE GS 95.0 0.09 2E-06 41.1 6.4 68 228-298 12-80 (84)
82 PRK10853 putative reductase; P 94.9 0.043 9.4E-07 47.2 4.9 46 218-269 2-47 (118)
83 TIGR02182 GRXB Glutaredoxin, G 94.8 0.11 2.3E-06 47.7 7.4 68 220-299 2-70 (209)
84 TIGR01295 PedC_BrcD bacterioci 94.5 0.33 7.2E-06 41.6 9.4 62 229-290 32-106 (122)
85 cd03046 GST_N_GTT1_like GST_N 94.1 0.23 5E-06 37.4 6.7 61 234-298 10-72 (76)
86 cd03050 GST_N_Theta GST_N fami 94.0 0.29 6.4E-06 37.3 7.2 68 219-296 2-71 (76)
87 cd02953 DsbDgamma DsbD gamma f 93.9 0.14 3.1E-06 41.2 5.5 54 218-282 15-78 (104)
88 PHA02278 thioredoxin-like prot 93.9 0.23 4.9E-06 41.6 6.8 60 218-287 18-85 (103)
89 cd01659 TRX_superfamily Thiore 93.6 0.28 6.1E-06 32.7 5.8 56 218-284 1-61 (69)
90 COG4545 Glutaredoxin-related p 93.3 0.31 6.8E-06 40.0 6.4 69 219-294 5-82 (85)
91 cd03057 GST_N_Beta GST_N famil 93.3 0.36 7.8E-06 36.8 6.6 60 234-297 10-72 (77)
92 cd02947 TRX_family TRX family; 93.3 0.57 1.2E-05 34.8 7.6 54 218-285 14-74 (93)
93 cd03043 GST_N_1 GST_N family, 92.9 0.41 9E-06 36.8 6.5 64 229-296 7-71 (73)
94 cd03044 GST_N_EF1Bgamma GST_N 92.8 0.49 1.1E-05 36.2 6.7 60 233-296 10-71 (75)
95 PRK09481 sspA stringent starva 92.5 0.55 1.2E-05 42.7 7.8 71 214-295 7-77 (211)
96 TIGR02187 GlrX_arch Glutaredox 92.2 0.38 8.3E-06 44.5 6.4 61 217-291 136-204 (215)
97 cd03047 GST_N_2 GST_N family, 92.2 0.85 1.8E-05 34.5 7.2 67 219-295 2-70 (73)
98 PF03960 ArsC: ArsC family; I 91.8 0.33 7.1E-06 40.5 5.0 40 230-269 4-43 (110)
99 cd03077 GST_N_Alpha GST_N fami 91.8 1.1 2.5E-05 34.9 7.7 69 218-295 2-70 (79)
100 COG0484 DnaJ DnaJ-class molecu 91.6 0.13 2.9E-06 52.6 2.8 63 302-364 126-204 (371)
101 cd02949 TRX_NTR TRX domain, no 90.8 0.86 1.9E-05 36.4 6.3 56 218-287 17-80 (97)
102 TIGR00862 O-ClC intracellular 90.6 1.5 3.2E-05 42.0 8.8 63 231-298 18-80 (236)
103 PF13409 GST_N_2: Glutathione 90.4 0.45 9.7E-06 36.4 4.2 63 232-298 2-68 (70)
104 PF06953 ArsD: Arsenical resis 89.9 0.62 1.3E-05 40.9 5.1 81 216-297 2-95 (123)
105 PF13901 DUF4206: Domain of un 89.8 0.076 1.7E-06 49.6 -0.7 87 276-364 102-196 (202)
106 PRK10767 chaperone protein Dna 89.4 0.36 7.9E-06 48.7 3.8 64 301-364 125-202 (371)
107 cd02954 DIM1 Dim1 family; Dim1 88.9 1.5 3.3E-05 37.9 6.6 57 218-288 18-82 (114)
108 PF00684 DnaJ_CXXCXGXG: DnaJ c 88.8 0.41 8.8E-06 37.0 2.8 38 326-363 15-62 (66)
109 PRK14300 chaperone protein Dna 88.7 0.45 9.8E-06 48.2 3.9 64 301-364 128-205 (372)
110 cd02957 Phd_like Phosducin (Ph 88.5 1.8 4E-05 35.7 6.8 63 218-295 28-97 (113)
111 TIGR02187 GlrX_arch Glutaredox 88.5 2 4.3E-05 39.7 7.7 61 215-287 20-90 (215)
112 cd02989 Phd_like_TxnDC9 Phosdu 87.7 3.2 7E-05 34.8 7.9 57 218-288 26-89 (113)
113 PRK14290 chaperone protein Dna 87.6 0.5 1.1E-05 47.7 3.4 64 301-364 132-212 (365)
114 PTZ00057 glutathione s-transfe 87.5 4.6 0.0001 36.6 9.3 73 216-295 3-77 (205)
115 PRK14289 chaperone protein Dna 86.9 0.54 1.2E-05 47.7 3.2 64 301-364 137-218 (386)
116 PTZ00051 thioredoxin; Provisio 86.7 3 6.5E-05 32.7 6.8 56 218-287 22-84 (98)
117 PRK15113 glutathione S-transfe 86.7 3.3 7.1E-05 37.8 7.9 72 217-296 5-78 (214)
118 cd02985 TRX_CDSP32 TRX family, 86.4 4 8.7E-05 33.2 7.6 59 218-287 19-84 (103)
119 TIGR01068 thioredoxin thioredo 86.1 5.5 0.00012 30.7 7.9 56 218-287 18-81 (101)
120 KOG2813 Predicted molecular ch 85.7 0.58 1.3E-05 47.5 2.6 21 316-336 188-208 (406)
121 PRK14292 chaperone protein Dna 85.4 0.64 1.4E-05 46.9 2.8 64 301-364 122-204 (371)
122 cd03065 PDI_b_Calsequestrin_N 85.2 4.3 9.4E-05 35.1 7.5 60 217-287 29-100 (120)
123 TIGR01262 maiA maleylacetoacet 85.2 1.9 4.2E-05 38.6 5.5 61 233-297 9-72 (210)
124 PF00684 DnaJ_CXXCXGXG: DnaJ c 85.1 1.2 2.6E-05 34.4 3.6 37 315-356 15-66 (66)
125 KOG0907 Thioredoxin [Posttrans 85.0 3.3 7.2E-05 35.0 6.5 62 217-292 23-96 (106)
126 PRK09381 trxA thioredoxin; Pro 84.8 7.4 0.00016 31.4 8.3 57 218-288 25-89 (109)
127 cd03075 GST_N_Mu GST_N family, 84.8 6.4 0.00014 31.0 7.8 63 234-296 11-77 (82)
128 KOG0910 Thioredoxin-like prote 84.7 1.1 2.4E-05 40.8 3.7 56 218-287 65-128 (150)
129 cd02950 TxlA TRX-like protein 84.5 5.5 0.00012 34.7 7.9 78 218-309 24-113 (142)
130 TIGR01126 pdi_dom protein disu 84.4 2.8 6.2E-05 32.6 5.6 52 217-282 16-75 (102)
131 PLN02473 glutathione S-transfe 84.1 4.2 9.1E-05 36.7 7.3 70 218-297 3-74 (214)
132 PTZ00037 DnaJ_C chaperone prot 83.9 1.2 2.6E-05 46.3 4.0 64 301-364 133-215 (421)
133 PRK14291 chaperone protein Dna 83.9 1.1 2.3E-05 45.7 3.6 63 301-363 139-214 (382)
134 COG0178 UvrA Excinuclease ATPa 83.5 1.2 2.6E-05 50.1 4.1 52 285-337 696-764 (935)
135 PLN02817 glutathione dehydroge 83.4 3.4 7.5E-05 40.0 6.8 62 232-298 73-134 (265)
136 cd02951 SoxW SoxW family; SoxW 83.2 4.9 0.00011 33.4 6.8 56 218-283 18-92 (125)
137 PTZ00037 DnaJ_C chaperone prot 83.2 1 2.3E-05 46.7 3.3 41 315-359 166-221 (421)
138 PRK14296 chaperone protein Dna 82.8 1 2.2E-05 45.8 2.9 64 301-364 132-213 (372)
139 PRK14293 chaperone protein Dna 82.7 1.4 3.1E-05 44.6 4.0 63 301-363 126-206 (374)
140 PRK14283 chaperone protein Dna 82.4 1.5 3.1E-05 44.6 3.9 64 301-364 129-210 (378)
141 PRK14285 chaperone protein Dna 82.3 1 2.2E-05 45.6 2.8 64 301-364 129-206 (365)
142 KOG0712 Molecular chaperone (D 82.2 1 2.2E-05 45.8 2.7 64 301-364 110-193 (337)
143 COG3019 Predicted metal-bindin 82.1 10 0.00022 34.5 8.7 78 214-301 24-104 (149)
144 PRK14282 chaperone protein Dna 81.8 1.2 2.6E-05 45.0 3.1 63 301-363 135-215 (369)
145 cd02996 PDI_a_ERp44 PDIa famil 81.7 5 0.00011 32.4 6.2 51 218-282 22-84 (108)
146 PRK14287 chaperone protein Dna 81.1 1.4 3E-05 44.7 3.2 64 301-364 121-202 (371)
147 cd03078 GST_N_Metaxin1_like GS 81.0 16 0.00036 28.4 8.6 61 226-298 10-70 (73)
148 PRK14280 chaperone protein Dna 80.9 1.3 2.9E-05 44.9 3.1 64 301-364 126-207 (376)
149 PRK14282 chaperone protein Dna 80.8 1.3 2.9E-05 44.7 3.0 38 316-359 170-222 (369)
150 cd03004 PDI_a_ERdj5_C PDIa fam 80.7 8.1 0.00017 30.8 7.0 53 218-284 23-83 (104)
151 PLN02378 glutathione S-transfe 80.5 5.4 0.00012 36.5 6.7 63 231-298 19-81 (213)
152 cd02984 TRX_PICOT TRX domain, 80.3 9.2 0.0002 29.8 7.1 56 218-287 18-81 (97)
153 PLN02395 glutathione S-transfe 80.3 7 0.00015 35.2 7.2 70 218-298 3-74 (215)
154 PRK10767 chaperone protein Dna 80.1 1.5 3.2E-05 44.4 3.1 37 316-358 160-207 (371)
155 PRK14279 chaperone protein Dna 80.0 1.4 3E-05 45.1 2.9 58 301-358 156-224 (392)
156 PRK14276 chaperone protein Dna 79.9 1.4 3E-05 44.9 2.8 63 301-363 129-209 (380)
157 PRK14301 chaperone protein Dna 79.8 1.4 3.1E-05 44.7 2.8 63 301-363 127-203 (373)
158 KOG0868 Glutathione S-transfer 79.8 3.5 7.6E-05 39.1 5.1 73 216-299 4-80 (217)
159 PRK14277 chaperone protein Dna 79.7 1.5 3.3E-05 44.6 3.0 63 301-363 138-218 (386)
160 PRK14297 chaperone protein Dna 79.7 1.5 3.3E-05 44.5 3.0 64 301-364 131-212 (380)
161 PRK14288 chaperone protein Dna 79.6 1.7 3.6E-05 44.2 3.3 63 301-363 123-198 (369)
162 TIGR03140 AhpF alkyl hydropero 79.3 3.9 8.5E-05 42.7 6.0 61 214-288 117-182 (515)
163 PRK14286 chaperone protein Dna 79.0 1.7 3.6E-05 44.2 3.0 63 301-363 133-209 (372)
164 PF13719 zinc_ribbon_5: zinc-r 78.8 1.4 3E-05 30.7 1.7 29 326-354 2-33 (37)
165 cd02956 ybbN ybbN protein fami 78.2 8.4 0.00018 30.1 6.3 56 218-287 16-79 (96)
166 PRK15317 alkyl hydroperoxide r 78.1 4.9 0.00011 42.0 6.2 60 215-288 117-181 (517)
167 TIGR02349 DnaJ_bact chaperone 78.1 2.5 5.5E-05 42.3 4.0 64 301-364 126-207 (354)
168 PRK14284 chaperone protein Dna 78.1 1.7 3.6E-05 44.4 2.8 64 301-364 141-218 (391)
169 PRK14284 chaperone protein Dna 78.0 2.6 5.6E-05 43.1 4.1 37 316-358 176-223 (391)
170 PRK10996 thioredoxin 2; Provis 78.0 9.5 0.0002 33.0 7.1 56 218-287 56-119 (139)
171 PRK14296 chaperone protein Dna 77.8 2.4 5.1E-05 43.2 3.7 37 316-358 167-218 (372)
172 PRK14286 chaperone protein Dna 77.7 2.4 5.1E-05 43.1 3.7 38 316-359 168-216 (372)
173 PRK14295 chaperone protein Dna 77.7 1.9 4.2E-05 44.1 3.0 63 301-363 149-225 (389)
174 TIGR02642 phage_xxxx uncharact 77.5 1.7 3.7E-05 40.7 2.4 26 315-340 99-129 (186)
175 PRK14281 chaperone protein Dna 77.4 2 4.4E-05 43.9 3.2 63 301-363 146-225 (397)
176 PRK14278 chaperone protein Dna 77.4 2 4.4E-05 43.7 3.1 64 301-364 122-203 (378)
177 PRK14300 chaperone protein Dna 77.0 2 4.4E-05 43.5 3.0 37 316-358 163-210 (372)
178 PRK14280 chaperone protein Dna 76.9 2.9 6.4E-05 42.4 4.1 38 315-358 160-212 (376)
179 PRK14298 chaperone protein Dna 76.8 2 4.4E-05 43.7 2.9 64 301-364 124-205 (377)
180 PRK14294 chaperone protein Dna 76.7 2.1 4.5E-05 43.3 3.0 63 301-363 127-203 (366)
181 PRK14279 chaperone protein Dna 76.3 2.7 5.8E-05 43.1 3.6 39 315-359 190-239 (392)
182 TIGR02349 DnaJ_bact chaperone 76.3 2.3 5.1E-05 42.5 3.2 39 315-359 160-213 (354)
183 PRK14288 chaperone protein Dna 75.9 2.7 5.8E-05 42.7 3.5 38 315-358 156-204 (369)
184 PRK14290 chaperone protein Dna 75.8 2.4 5.2E-05 42.9 3.1 37 316-358 166-217 (365)
185 cd02994 PDI_a_TMX PDIa family, 75.8 8.8 0.00019 30.4 5.8 52 217-282 19-77 (101)
186 cd02959 ERp19 Endoplasmic reti 75.6 5.4 0.00012 33.7 4.8 54 218-282 23-82 (117)
187 cd03079 GST_N_Metaxin2 GST_N f 75.6 14 0.0003 29.5 6.8 56 232-298 17-72 (74)
188 PRK14301 chaperone protein Dna 75.1 3.2 6.9E-05 42.2 3.8 37 316-358 162-209 (373)
189 cd02948 TRX_NDPK TRX domain, T 74.9 11 0.00025 30.4 6.3 54 218-286 21-83 (102)
190 PRK14276 chaperone protein Dna 74.6 3.2 6.8E-05 42.3 3.6 37 316-358 164-215 (380)
191 PRK14295 chaperone protein Dna 74.5 3.2 6.9E-05 42.5 3.6 37 316-358 184-231 (389)
192 PF00085 Thioredoxin: Thioredo 74.5 15 0.00032 28.4 6.7 50 230-287 27-84 (103)
193 cd02961 PDI_a_family Protein D 74.4 12 0.00026 28.3 6.0 52 217-282 18-77 (101)
194 PF02798 GST_N: Glutathione S- 74.2 29 0.00064 26.7 8.3 58 234-295 11-72 (76)
195 PRK14289 chaperone protein Dna 74.0 3.3 7.1E-05 42.2 3.6 38 315-358 171-223 (386)
196 PRK14277 chaperone protein Dna 73.5 3.3 7.2E-05 42.2 3.5 38 315-358 172-224 (386)
197 PRK14285 chaperone protein Dna 73.4 3.7 7.9E-05 41.7 3.7 38 316-359 164-212 (365)
198 KOG2813 Predicted molecular ch 73.4 2 4.3E-05 43.8 1.8 51 314-364 197-263 (406)
199 COG2999 GrxB Glutaredoxin 2 [P 73.3 4.9 0.00011 38.2 4.2 73 230-308 7-80 (215)
200 PRK13972 GSH-dependent disulfi 72.3 18 0.00038 32.9 7.6 68 218-296 2-78 (215)
201 PRK14298 chaperone protein Dna 71.7 4.1 8.9E-05 41.5 3.7 37 316-358 159-210 (377)
202 PRK14281 chaperone protein Dna 71.6 4.1 8.8E-05 41.8 3.6 37 316-358 180-231 (397)
203 cd02963 TRX_DnaJ TRX domain, D 71.5 15 0.00033 30.3 6.4 56 218-287 28-92 (111)
204 cd03003 PDI_a_ERdj5_N PDIa fam 71.4 13 0.00029 29.5 5.9 54 218-285 22-83 (101)
205 PRK14297 chaperone protein Dna 71.2 4.1 8.9E-05 41.4 3.5 37 316-358 166-217 (380)
206 KOG1695 Glutathione S-transfer 71.0 19 0.00041 34.2 7.7 66 219-295 5-70 (206)
207 cd02965 HyaE HyaE family; HyaE 71.0 18 0.00038 31.2 6.8 64 215-290 28-99 (111)
208 cd02987 Phd_like_Phd Phosducin 71.0 14 0.00031 33.6 6.7 57 217-288 85-149 (175)
209 PRK14294 chaperone protein Dna 70.8 4.1 8.8E-05 41.2 3.4 37 316-358 162-209 (366)
210 TIGR00630 uvra excinuclease AB 70.8 3 6.5E-05 47.5 2.7 24 314-337 735-770 (924)
211 TIGR03143 AhpF_homolog putativ 70.6 11 0.00024 40.0 6.6 58 215-286 477-539 (555)
212 TIGR00595 priA primosomal prot 69.5 4 8.6E-05 43.2 3.1 46 315-364 213-260 (505)
213 PRK14873 primosome assembly pr 69.5 4.8 0.00011 44.2 3.8 46 315-364 383-429 (665)
214 cd02962 TMX2 TMX2 family; comp 69.4 17 0.00037 32.6 6.7 60 218-288 51-122 (152)
215 cd02955 SSP411 TRX domain, SSP 69.4 17 0.00037 31.5 6.5 64 218-287 18-94 (124)
216 cd03002 PDI_a_MPD1_like PDI fa 69.0 15 0.00033 29.2 5.7 54 217-282 21-80 (109)
217 cd03001 PDI_a_P5 PDIa family, 68.7 19 0.00042 28.1 6.2 51 218-282 22-78 (103)
218 PRK14287 chaperone protein Dna 68.6 3.8 8.2E-05 41.7 2.6 38 316-359 156-208 (371)
219 cd03023 DsbA_Com1_like DsbA fa 68.0 3.6 7.7E-05 34.3 2.0 61 237-297 87-150 (154)
220 KOG0406 Glutathione S-transfer 67.8 29 0.00063 33.7 8.3 75 215-299 7-81 (231)
221 PRK14278 chaperone protein Dna 67.7 5.5 0.00012 40.6 3.6 37 316-358 157-208 (378)
222 PRK14293 chaperone protein Dna 67.5 4.8 0.0001 40.9 3.1 37 316-358 161-212 (374)
223 COG1107 Archaea-specific RecJ- 66.6 3.6 7.9E-05 44.9 2.1 43 315-357 53-106 (715)
224 PRK14291 chaperone protein Dna 66.6 4.9 0.00011 41.0 3.0 37 315-358 173-220 (382)
225 PRK14292 chaperone protein Dna 66.5 4.7 0.0001 40.8 2.8 38 315-358 157-209 (371)
226 cd02952 TRP14_like Human TRX-r 66.5 14 0.00031 31.9 5.4 49 224-282 38-96 (119)
227 cd03005 PDI_a_ERp46 PDIa famil 66.3 14 0.00031 28.8 5.0 55 217-285 19-84 (102)
228 PF14595 Thioredoxin_9: Thiore 65.6 3.3 7E-05 36.1 1.3 58 214-282 41-103 (129)
229 PRK10542 glutathionine S-trans 65.4 16 0.00034 32.4 5.7 60 234-297 10-73 (201)
230 PF15616 TerY-C: TerY-C metal 64.6 6.1 0.00013 35.3 2.8 39 316-358 78-117 (131)
231 PRK10357 putative glutathione 64.6 18 0.00038 32.3 5.9 66 219-295 2-68 (202)
232 PRK14283 chaperone protein Dna 63.9 5.8 0.00013 40.3 2.9 37 316-358 164-215 (378)
233 cd03022 DsbA_HCCA_Iso DsbA fam 63.7 5.5 0.00012 35.0 2.4 61 237-297 125-188 (192)
234 PRK05580 primosome assembly pr 63.6 5.8 0.00013 43.4 3.0 46 315-364 381-428 (679)
235 COG3118 Thioredoxin domain-con 63.6 14 0.0003 37.3 5.3 61 217-291 45-114 (304)
236 TIGR02642 phage_xxxx uncharact 63.6 5.1 0.00011 37.6 2.2 30 326-359 99-128 (186)
237 PTZ00443 Thioredoxin domain-co 63.3 30 0.00065 33.1 7.4 56 218-287 56-119 (224)
238 cd02999 PDI_a_ERp44_like PDIa 62.5 24 0.00051 28.8 5.8 51 218-282 22-78 (100)
239 cd02998 PDI_a_ERp38 PDIa famil 62.5 21 0.00045 27.8 5.3 51 218-282 22-81 (105)
240 COG0625 Gst Glutathione S-tran 61.6 21 0.00046 32.1 5.9 60 233-296 10-71 (211)
241 PF10865 DUF2703: Domain of un 61.1 33 0.00072 30.1 6.7 79 229-340 12-102 (120)
242 PRK11752 putative S-transferas 59.7 58 0.0012 31.2 8.7 76 211-297 38-125 (264)
243 cd02997 PDI_a_PDIR PDIa family 59.7 24 0.00053 27.5 5.3 56 218-285 21-86 (104)
244 PLN03165 chaperone protein dna 59.4 6.9 0.00015 33.9 2.2 24 315-338 75-98 (111)
245 PF13717 zinc_ribbon_4: zinc-r 59.1 6.5 0.00014 27.3 1.6 28 327-354 3-33 (36)
246 PRK10877 protein disulfide iso 58.8 68 0.0015 30.5 9.0 22 273-294 199-221 (232)
247 cd02986 DLP Dim1 family, Dim1- 58.6 17 0.00036 31.7 4.4 57 217-287 16-81 (114)
248 cd02993 PDI_a_APS_reductase PD 58.6 21 0.00046 29.1 4.9 53 217-281 24-83 (109)
249 cd03020 DsbA_DsbC_DsbG DsbA fa 57.9 77 0.0017 28.6 8.9 35 214-254 77-113 (197)
250 smart00834 CxxC_CXXC_SSSS Puta 57.6 6.6 0.00014 26.8 1.4 10 345-354 25-34 (41)
251 COG0484 DnaJ DnaJ-class molecu 57.4 7.7 0.00017 40.1 2.5 31 324-357 140-170 (371)
252 COG3340 PepE Peptidase E [Amin 56.5 58 0.0012 31.7 8.0 71 228-311 43-117 (224)
253 PF13098 Thioredoxin_2: Thiore 55.9 44 0.00095 26.7 6.3 67 217-293 8-105 (112)
254 KOG1422 Intracellular Cl- chan 55.6 32 0.0007 33.3 6.1 63 231-298 20-82 (221)
255 cd02972 DsbA_family DsbA famil 54.6 32 0.00069 25.8 5.0 65 218-288 1-96 (98)
256 PRK00635 excinuclease ABC subu 54.5 11 0.00024 46.0 3.5 51 286-337 1574-1641(1809)
257 cd03006 PDI_a_EFP1_N PDIa fami 52.7 36 0.00078 28.9 5.4 55 218-285 33-95 (113)
258 cd02992 PDI_a_QSOX PDIa family 51.7 30 0.00065 28.8 4.8 53 218-282 23-84 (114)
259 PF11331 DUF3133: Protein of u 51.7 6.3 0.00014 29.3 0.6 34 322-355 2-40 (46)
260 PF11009 DUF2847: Protein of u 51.6 36 0.00079 29.2 5.3 65 215-287 19-91 (105)
261 TIGR02740 TraF-like TraF-like 50.7 43 0.00093 32.7 6.3 57 216-282 168-235 (271)
262 PF14354 Lar_restr_allev: Rest 50.3 12 0.00026 27.9 2.0 28 326-354 3-37 (61)
263 cd03000 PDI_a_TMX3 PDIa family 49.6 60 0.0013 26.0 6.1 51 218-282 19-78 (104)
264 cd03008 TryX_like_RdCVF Trypar 49.5 1.2E+02 0.0027 27.0 8.6 23 216-243 26-48 (146)
265 PF01323 DSBA: DSBA-like thior 48.4 7.1 0.00015 34.3 0.5 62 236-297 124-189 (193)
266 cd02995 PDI_a_PDI_a'_C PDIa fa 48.3 39 0.00084 26.3 4.7 51 217-282 21-79 (104)
267 PHA00626 hypothetical protein 48.1 13 0.00029 29.0 1.9 17 318-334 3-19 (59)
268 PLN00410 U5 snRNP protein, DIM 48.0 1E+02 0.0023 27.6 7.9 55 218-285 27-89 (142)
269 cd02988 Phd_like_VIAF Phosduci 48.0 65 0.0014 29.9 6.8 54 217-287 104-165 (192)
270 PF10568 Tom37: Outer mitochon 47.9 78 0.0017 25.0 6.3 54 232-297 14-71 (72)
271 PF13462 Thioredoxin_4: Thiore 47.7 28 0.0006 29.5 4.1 22 273-294 133-154 (162)
272 PRK13728 conjugal transfer pro 46.3 66 0.0014 30.0 6.5 67 218-292 73-160 (181)
273 PRK14714 DNA polymerase II lar 45.2 16 0.00034 43.2 2.7 43 315-364 667-716 (1337)
274 COG5494 Predicted thioredoxin/ 45.0 35 0.00076 33.3 4.6 57 217-287 12-70 (265)
275 cd03009 TryX_like_TryX_NRX Try 44.8 91 0.002 25.8 6.7 9 274-282 97-105 (131)
276 PRK04023 DNA polymerase II lar 43.2 20 0.00043 41.6 3.0 43 315-364 626-670 (1121)
277 PF08792 A2L_zn_ribbon: A2L zi 42.7 15 0.00031 25.4 1.2 24 328-353 5-28 (33)
278 cd03031 GRX_GRX_like Glutaredo 42.6 18 0.00039 32.5 2.2 9 317-325 112-120 (147)
279 PF08271 TF_Zn_Ribbon: TFIIB z 42.1 18 0.0004 25.6 1.7 24 328-352 2-25 (43)
280 cd02964 TryX_like_family Trypa 41.9 1.2E+02 0.0025 25.5 6.9 9 274-282 97-105 (132)
281 PRK11509 hydrogenase-1 operon 41.7 1.6E+02 0.0035 26.2 7.9 43 240-290 60-107 (132)
282 smart00659 RPOLCX RNA polymera 41.2 17 0.00037 26.4 1.5 26 328-356 4-29 (44)
283 PF09297 zf-NADH-PPase: NADH p 41.0 16 0.00036 24.3 1.3 25 328-354 5-29 (32)
284 TIGR00108 eRF peptide chain re 40.9 15 0.00032 38.1 1.6 55 283-337 290-357 (409)
285 KOG4244 Failed axon connection 39.9 56 0.0012 32.7 5.2 70 214-295 42-112 (281)
286 cd03024 DsbA_FrnE DsbA family, 39.3 14 0.00031 32.8 1.0 60 237-296 133-196 (201)
287 COG1198 PriA Primosomal protei 38.9 29 0.00062 38.9 3.4 46 315-364 435-482 (730)
288 PRK10954 periplasmic protein d 38.4 17 0.00036 33.5 1.3 57 236-292 124-183 (207)
289 KOG2824 Glutaredoxin-related p 37.0 25 0.00054 35.2 2.3 29 316-353 241-280 (281)
290 cd00079 HELICc Helicase superf 35.8 74 0.0016 25.4 4.6 92 214-312 27-119 (131)
291 TIGR02098 MJ0042_CXXC MJ0042 f 35.7 26 0.00056 23.8 1.7 29 327-355 3-34 (38)
292 cd02982 PDI_b'_family Protein 35.7 1.2E+02 0.0027 23.6 5.8 45 232-282 24-74 (103)
293 TIGR01162 purE phosphoribosyla 35.7 1.1E+02 0.0023 28.2 6.1 67 231-298 10-100 (156)
294 PRK02935 hypothetical protein; 35.3 22 0.00047 31.0 1.4 25 327-355 71-95 (110)
295 PF13728 TraF: F plasmid trans 35.1 1.3E+02 0.0028 28.4 6.7 59 214-282 120-189 (215)
296 TIGR00595 priA primosomal prot 34.7 26 0.00057 37.1 2.3 35 315-356 222-263 (505)
297 PRK00349 uvrA excinuclease ABC 34.5 27 0.00059 40.1 2.5 24 314-337 737-772 (943)
298 PF00731 AIRC: AIR carboxylase 34.1 69 0.0015 29.1 4.5 38 217-258 2-39 (150)
299 TIGR00311 aIF-2beta translatio 33.0 43 0.00094 29.8 3.0 33 325-357 96-129 (133)
300 PF07315 DUF1462: Protein of u 32.7 1.2E+02 0.0026 25.8 5.4 43 246-290 37-81 (93)
301 KOG0712 Molecular chaperone (D 32.6 39 0.00085 34.6 3.0 39 316-358 144-198 (337)
302 KOG0908 Thioredoxin-like prote 32.6 1.2E+02 0.0027 30.3 6.3 64 216-293 23-96 (288)
303 TIGR02738 TrbB type-F conjugat 32.6 1.9E+02 0.0041 25.8 7.1 37 214-256 50-90 (153)
304 PF13905 Thioredoxin_8: Thiore 32.3 84 0.0018 24.3 4.3 46 218-270 5-56 (95)
305 PF06989 BAALC_N: BAALC N-term 32.1 22 0.00047 27.0 0.8 14 1-14 1-14 (53)
306 PRK00293 dipZ thiol:disulfide 32.1 1.2E+02 0.0026 32.8 6.6 56 217-282 476-540 (571)
307 COG2260 Predicted Zn-ribbon RN 31.8 23 0.00051 27.7 1.0 19 346-364 5-24 (59)
308 PF11023 DUF2614: Protein of u 31.6 23 0.00049 31.1 1.0 27 326-356 69-95 (114)
309 cd03010 TlpA_like_DsbE TlpA-li 31.1 2.7E+02 0.0058 22.8 7.3 26 232-257 37-66 (127)
310 PF12760 Zn_Tnp_IS1595: Transp 31.0 45 0.00097 23.9 2.3 25 328-353 20-44 (46)
311 TIGR03676 aRF1/eRF1 peptide ch 30.6 34 0.00075 35.4 2.3 55 283-337 286-353 (403)
312 KOG1829 Uncharacterized conser 30.6 17 0.00037 39.6 0.1 131 219-354 384-539 (580)
313 smart00653 eIF2B_5 domain pres 30.4 43 0.00094 28.8 2.5 29 325-353 79-108 (110)
314 TIGR02605 CxxC_CxxC_SSSS putat 30.3 30 0.00066 25.0 1.4 11 345-355 25-35 (52)
315 cd01480 vWA_collagen_alpha_1-V 30.0 2.2E+02 0.0048 25.4 7.1 70 214-285 108-184 (186)
316 PRK03988 translation initiatio 30.0 50 0.0011 29.6 2.9 34 325-358 101-135 (138)
317 PRK00564 hypA hydrogenase nick 29.6 42 0.0009 28.9 2.3 23 314-336 70-98 (117)
318 PLN02189 cellulose synthase 29.4 28 0.0006 40.5 1.5 39 315-354 34-84 (1040)
319 PF14451 Ub-Mut7C: Mut7-C ubiq 29.4 42 0.00092 27.3 2.2 18 237-254 34-51 (81)
320 PHA00626 hypothetical protein 29.3 43 0.00094 26.2 2.1 29 328-365 2-31 (59)
321 COG3634 AhpF Alkyl hydroperoxi 29.0 1.1E+02 0.0023 32.5 5.3 66 214-290 116-183 (520)
322 cd03019 DsbA_DsbA DsbA family, 28.4 36 0.00079 29.3 1.7 57 236-292 100-159 (178)
323 TIGR00424 APS_reduc 5'-adenyly 28.1 1.3E+02 0.0029 31.9 6.1 55 218-284 375-438 (463)
324 cd02966 TlpA_like_family TlpA- 28.0 2.7E+02 0.0058 21.0 6.7 34 218-257 23-63 (116)
325 PF14205 Cys_rich_KTR: Cystein 27.7 59 0.0013 25.2 2.5 35 324-358 2-40 (55)
326 PF07092 DUF1356: Protein of u 27.6 32 0.00069 33.7 1.3 28 315-342 27-54 (238)
327 PF01873 eIF-5_eIF-2B: Domain 27.5 35 0.00077 30.0 1.5 45 297-354 77-122 (125)
328 KOG0867 Glutathione S-transfer 27.5 1.8E+02 0.0038 27.3 6.3 69 217-295 2-72 (226)
329 TIGR01130 ER_PDI_fam protein d 27.5 1.5E+02 0.0033 29.5 6.1 54 218-285 22-86 (462)
330 PF04216 FdhE: Protein involve 27.2 31 0.00067 33.7 1.2 35 315-355 172-220 (290)
331 PRK03147 thiol-disulfide oxido 27.2 3.4E+02 0.0074 23.2 7.6 14 274-287 136-152 (173)
332 PRK00635 excinuclease ABC subu 27.2 62 0.0013 39.9 3.9 51 286-337 687-751 (1809)
333 PRK06319 DNA topoisomerase I/S 26.8 72 0.0016 36.3 4.1 9 315-323 592-600 (860)
334 PF04566 RNA_pol_Rpb2_4: RNA p 26.5 62 0.0013 25.1 2.5 19 280-298 1-19 (63)
335 PRK07220 DNA topoisomerase I; 26.1 69 0.0015 35.8 3.8 51 315-365 589-665 (740)
336 PLN02309 5'-adenylylsulfate re 25.6 1.4E+02 0.0029 31.8 5.6 53 217-282 368-428 (457)
337 PF01927 Mut7-C: Mut7-C RNAse 25.6 37 0.0008 30.0 1.3 47 301-354 73-132 (147)
338 PTZ00408 NAD-dependent deacety 25.4 41 0.00088 32.4 1.6 13 347-359 138-150 (242)
339 COG1107 Archaea-specific RecJ- 25.3 39 0.00085 37.3 1.6 9 329-337 98-106 (715)
340 PRK15412 thiol:disulfide inter 25.2 2.9E+02 0.0063 24.8 7.0 35 218-258 72-109 (185)
341 cd03146 GAT1_Peptidase_E Type 25.2 2.6E+02 0.0056 25.9 6.9 63 233-308 46-109 (212)
342 KOG4684 Uncharacterized conser 24.6 29 0.00063 33.9 0.5 17 347-363 171-195 (275)
343 PRK00142 putative rhodanese-re 24.4 1.5E+02 0.0032 29.7 5.4 28 214-248 170-197 (314)
344 TIGR00385 dsbE periplasmic pro 24.4 3E+02 0.0064 24.3 6.9 24 232-255 75-101 (173)
345 COG1571 Predicted DNA-binding 24.3 35 0.00076 35.9 1.0 140 206-354 202-375 (421)
346 cd03129 GAT1_Peptidase_E_like 24.1 4.4E+02 0.0095 24.1 8.1 82 215-309 29-111 (210)
347 PRK12336 translation initiatio 23.7 74 0.0016 29.9 3.0 32 325-356 97-129 (201)
348 PLN02436 cellulose synthase A 23.4 42 0.00092 39.2 1.5 39 315-354 36-86 (1094)
349 PF03358 FMN_red: NADPH-depend 23.4 1.1E+02 0.0024 26.0 3.8 74 217-295 2-90 (152)
350 PRK04011 peptide chain release 23.4 53 0.0012 34.1 2.1 54 283-336 294-360 (411)
351 PRK04023 DNA polymerase II lar 23.3 54 0.0012 38.2 2.3 15 237-251 506-520 (1121)
352 PRK00420 hypothetical protein; 22.9 48 0.001 28.9 1.4 11 345-355 39-49 (112)
353 COG4332 Uncharacterized protei 22.9 46 0.00099 31.7 1.4 40 313-355 15-58 (203)
354 KOG3217 Protein tyrosine phosp 22.9 79 0.0017 29.2 2.9 72 214-294 43-141 (159)
355 PF04236 Transp_Tc5_C: Tc5 tra 22.9 48 0.001 26.1 1.3 20 345-364 26-47 (63)
356 PTZ00062 glutaredoxin; Provisi 22.8 2.3E+02 0.005 26.8 6.1 54 215-288 17-76 (204)
357 PF04783 DUF630: Protein of un 22.7 38 0.00082 26.5 0.7 9 1-9 1-9 (60)
358 PF03833 PolC_DP2: DNA polymer 22.6 29 0.00062 39.6 0.0 43 315-364 655-699 (900)
359 PLN02638 cellulose synthase A 22.1 42 0.0009 39.2 1.2 38 315-353 17-66 (1079)
360 PRK14892 putative transcriptio 22.1 48 0.001 28.3 1.2 7 358-364 43-49 (99)
361 PF10080 DUF2318: Predicted me 22.0 47 0.001 28.4 1.2 23 315-337 35-63 (102)
362 PTZ00102 disulphide isomerase; 22.0 2.2E+02 0.0048 28.8 6.2 52 217-282 52-112 (477)
363 KOG2324 Prolyl-tRNA synthetase 21.9 64 0.0014 33.9 2.3 13 347-359 248-260 (457)
364 cd03011 TlpA_like_ScsD_MtbDsbE 21.8 86 0.0019 25.4 2.7 12 232-243 32-43 (123)
365 PF09369 DUF1998: Domain of un 21.7 22 0.00047 28.2 -0.8 36 275-310 33-68 (84)
366 TIGR00757 RNaseEG ribonuclease 20.7 1.1E+02 0.0023 32.0 3.7 34 235-269 313-353 (414)
367 PF09788 Tmemb_55A: Transmembr 20.6 51 0.0011 32.6 1.2 17 347-363 158-183 (256)
368 PRK14873 primosome assembly pr 20.2 68 0.0015 35.5 2.3 36 314-357 391-433 (665)
No 1
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-67 Score=500.45 Aligned_cols=262 Identities=48% Similarity=0.810 Sum_probs=205.1
Q ss_pred ceeeeccccccccccccCCCCCCCCCCCCC-ccccCCC---CCC--CCC--CCCccchHHHhhcCCCCCCCC--CccCcc
Q 017790 75 HLVSLTSTTYGSLLLIDRFNGQDSPDQIMP-TTTAANP---VEP--SSL--SPDSVINTWELMDGLDDDDDG--VVVDDD 144 (366)
Q Consensus 75 h~V~ltStt~G~l~l~~~~~~~~~~~~~~p-~~~~~~~---~~~--~~~--~~~e~In~WeLM~gLd~~~~~--~~~~~~ 144 (366)
|+|+|||||||+|.| ++++| |++.... ... .+. ..+|+||+||||.||+++.++ ..|...
T Consensus 1 ~~~~lts~~~~~l~~----------~~~~p~~~~~~~k~~~~~~~~~~~~~~~~~~i~s~e~~~~l~~~~~~~~~~p~~~ 70 (281)
T KOG2824|consen 1 HIVSLTSTTYGLLVL----------PMTLPPRVTVSGKESKIAPIRDSSSPTGPEVINSWELMLDLDDELHRSCKTPITP 70 (281)
T ss_pred Ccccccchhhhheec----------cccCCcceecccccccccccccCCCCCchhhhhhhhhccCccccccccccCCCCC
Confidence 899999999999998 23333 4332222 111 122 334999999999999998875 333221
Q ss_pred c--CCCCCCCCCccccCCCCCCCcccc----chhhhhccCCChhhHHHHHHhhhccccCCCCCCCCccCCCCCCCCCCcE
Q 017790 145 I--NFHKADACGSVKVSPSTTKPLWKH----LSEESLLSKMDPNVASSYRRALSSRQLGYNNNNHHHHQHRPTKESNNKI 218 (366)
Q Consensus 145 ~--~~~~~~~~~~~~~~~~~~~p~~~~----~~~e~~~~~~dp~~~ss~~k~Ls~~~~~~~~~~~~~~~~~~~~~~~~kV 218 (366)
. ++..-...+ +.......+|.|.. +++++.+.++|++- ......++..|+|+++++|
T Consensus 71 ~~~~~~~~~~~~-~~~s~~~~~p~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~e~~~~~~Pgge~~V 133 (281)
T KOG2824|consen 71 TSVSLRVKALNL-LGKSKGSWPPVILKPEKRLSSESGLKELDKSP----------------NKLLLEFKEVCPPGGEDRV 133 (281)
T ss_pred cccccccccccc-cccccCcCCccccccccccccccccccccccc----------------ccchhhhhhcCCCCCCceE
Confidence 1 111111111 11112223444443 36777788888761 0123345678889999999
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHHh
Q 017790 219 VIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNE 298 (366)
Q Consensus 219 VVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~E 298 (366)
|||||||+||||||++|+.||+||++++|.|+||||+||.+|++||+++++......++|+|||+|+||||+++|++|+|
T Consensus 134 VvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~LnE 213 (281)
T KOG2824|consen 134 VVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRLNE 213 (281)
T ss_pred EEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999963457899999999999999999999999
Q ss_pred cCcHHHHhcCCCCcccccccccCCccceeeCCCCCCCceeee--cCCCccccCCccccCccccCCCCC
Q 017790 299 TGDLAMLLKGFPVVNAVSVCESCGDARFVPCSHCCGSRKVFD--EEDGQLRRCTNCNENGLIRCPACS 364 (366)
Q Consensus 299 sGeL~kLL~~~~~~~~~~~C~~CGg~rfvpC~~C~GS~Kv~~--e~~~~~~rC~~CNENGLirCp~C~ 364 (366)
.|+|.+||++++ ......|++|||.||+||..||||||++. +++++++||++||||||||||+|+
T Consensus 214 ~GkL~~lL~~~p-~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 214 EGKLGKLLKGIP-CEGGGVCESCGGARFLPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred cchHHHHHhcCC-CCCCCcCCCcCCcceEecCCCCCceeeeeeccCCCcEEECcccCCCCceeCCccC
Confidence 999999999999 44568999999999999999999999998 566789999999999999999997
No 2
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=100.00 E-value=9.1e-51 Score=359.00 Aligned_cols=144 Identities=58% Similarity=1.085 Sum_probs=137.2
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHH
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQL 296 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L 296 (366)
+||||||||+|||+||++|.+||+||++++|+|+|+||+||+++++||+++++..+++.++|||||+|+||||+|++++|
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999998655679999999999999999999999
Q ss_pred HhcCcHHHHhcCCCCcccccccccCCccceeeCCCCCCCceeeecC---CCccccCCccccCccccC
Q 017790 297 NETGDLAMLLKGFPVVNAVSVCESCGDARFVPCSHCCGSRKVFDEE---DGQLRRCTNCNENGLIRC 360 (366)
Q Consensus 297 ~EsGeL~kLL~~~~~~~~~~~C~~CGg~rfvpC~~C~GS~Kv~~e~---~~~~~rC~~CNENGLirC 360 (366)
||+|+|+++|++++.......|++|||.|||||..|+||+|+|.++ .+.++||++|||||||||
T Consensus 81 ~e~G~L~~lL~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 81 NESGELRKLLKGIRARAGGGVCEGCGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC 147 (147)
T ss_pred HHcCCHHHHHhhcccccCCCCCCCCCCcCeEECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence 9999999999999887778899999999999999999999999876 367999999999999999
No 3
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.90 E-value=9e-24 Score=173.79 Aligned_cols=90 Identities=23% Similarity=0.289 Sum_probs=85.4
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHH
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLN 297 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~ 297 (366)
|+||+||++|+|+++..|.+|+++|++++|+|+|+||++|++.+++|+++.+...+..++|||||+|+||||+|++.+|+
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998863345789999999999999999999999
Q ss_pred hcCcHHHHhc
Q 017790 298 ETGDLAMLLK 307 (366)
Q Consensus 298 EsGeL~kLL~ 307 (366)
++|+|.++|+
T Consensus 82 e~g~L~~lLk 91 (92)
T cd03030 82 ENNTLEEFLK 91 (92)
T ss_pred hCCCHHHHhC
Confidence 9999999985
No 4
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.82 E-value=4.2e-20 Score=152.64 Aligned_cols=93 Identities=26% Similarity=0.397 Sum_probs=79.6
Q ss_pred CCCCCcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccch
Q 017790 212 KESNNKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAE 291 (366)
Q Consensus 212 ~~~~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaD 291 (366)
.+.+++|+||++++| ++|.+||++|+++|++|+++||+.+++. .++++.++..+|+.|+|||||+|++|||+|
T Consensus 4 ~i~~~~Vvvysk~~C------p~C~~ak~~L~~~~i~~~~vdid~~~~~-~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~d 76 (99)
T TIGR02189 4 MVSEKAVVIFSRSSC------CMCHVVKRLLLTLGVNPAVHEIDKEPAG-KDIENALSRLGCSPAVPAVFVGGKLVGGLE 76 (99)
T ss_pred hhccCCEEEEECCCC------HHHHHHHHHHHHcCCCCEEEEcCCCccH-HHHHHHHHHhcCCCCcCeEEECCEEEcCHH
Confidence 357789999998765 5999999999999999999999988654 344444544567899999999999999999
Q ss_pred HHHHHHhcCcHHHHhcCCCC
Q 017790 292 EIKQLNETGDLAMLLKGFPV 311 (366)
Q Consensus 292 Ev~~L~EsGeL~kLL~~~~~ 311 (366)
++++|+++|+|.++|+.+++
T Consensus 77 dl~~l~~~G~L~~~l~~~~~ 96 (99)
T TIGR02189 77 NVMALHISGSLVPMLKQAGA 96 (99)
T ss_pred HHHHHHHcCCHHHHHHHhCc
Confidence 99999999999999987754
No 5
>PRK10824 glutaredoxin-4; Provisional
Probab=99.82 E-value=4.8e-20 Score=157.63 Aligned_cols=95 Identities=19% Similarity=0.305 Sum_probs=82.4
Q ss_pred CCCCCcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccch
Q 017790 212 KESNNKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAE 291 (366)
Q Consensus 212 ~~~~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaD 291 (366)
.+..++||||+++..- +..|++|.+|+++|+.+|++|.++||..|.+.+++|+++. |++|||||||+|+||||+|
T Consensus 11 ~I~~~~Vvvf~Kg~~~-~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~s----g~~TVPQIFI~G~~IGG~d 85 (115)
T PRK10824 11 QIAENPILLYMKGSPK-LPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYA----NWPTFPQLWVDGELVGGCD 85 (115)
T ss_pred HHhcCCEEEEECCCCC-CCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHh----CCCCCCeEEECCEEEcChH
Confidence 3477899999876321 3467799999999999999999999998887777777765 4899999999999999999
Q ss_pred HHHHHHhcCcHHHHhcCCCC
Q 017790 292 EIKQLNETGDLAMLLKGFPV 311 (366)
Q Consensus 292 Ev~~L~EsGeL~kLL~~~~~ 311 (366)
++.+|+++|+|.++|+.+++
T Consensus 86 dl~~l~~~G~L~~lL~~~~~ 105 (115)
T PRK10824 86 IVIEMYQRGELQQLIKETAA 105 (115)
T ss_pred HHHHHHHCCCHHHHHHHHHh
Confidence 99999999999999987665
No 6
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.82 E-value=1e-19 Score=149.80 Aligned_cols=89 Identities=21% Similarity=0.388 Sum_probs=79.0
Q ss_pred CCCCcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchH
Q 017790 213 ESNNKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEE 292 (366)
Q Consensus 213 ~~~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDE 292 (366)
..+++||||+++... +.+|++|.+||++|+.+||+|+++||..+.+.+++|.++.+ +.++|||||||++|||+|+
T Consensus 9 i~~~~Vvvf~kg~~~-~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg----~~tvP~vfi~g~~iGG~dd 83 (97)
T TIGR00365 9 IKENPVVLYMKGTPQ-FPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSN----WPTIPQLYVKGEFVGGCDI 83 (97)
T ss_pred hccCCEEEEEccCCC-CCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhC----CCCCCEEEECCEEEeChHH
Confidence 477899999876522 45678999999999999999999999988888888887654 6899999999999999999
Q ss_pred HHHHHhcCcHHHHh
Q 017790 293 IKQLNETGDLAMLL 306 (366)
Q Consensus 293 v~~L~EsGeL~kLL 306 (366)
+++|+++|+|.++|
T Consensus 84 l~~l~~~g~L~~~l 97 (97)
T TIGR00365 84 IMEMYQSGELQTLL 97 (97)
T ss_pred HHHHHHCcChHHhC
Confidence 99999999999986
No 7
>PHA03050 glutaredoxin; Provisional
Probab=99.79 E-value=7.1e-19 Score=148.09 Aligned_cols=90 Identities=21% Similarity=0.407 Sum_probs=78.1
Q ss_pred CCCCcEEEEEeCCCCCCCCCchHHHHHHHHHhCCC---cEEEEEccC---CHHHHHHHHHHHcCCCCCCcccEEEeCCEE
Q 017790 213 ESNNKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRV---GVDERDISM---DSSYRKELQDLLGVEGKAITLPQVFIRGKH 286 (366)
Q Consensus 213 ~~~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV---~ydErDVsm---D~e~reEL~elLg~~tg~~TVPqVFVdG~~ 286 (366)
..+++|+||++++| ++|.+||++|+.++| .|+++||+. +.+.+++|.++.+ +.|||+|||+|++
T Consensus 10 i~~~~V~vys~~~C------PyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG----~~tVP~IfI~g~~ 79 (108)
T PHA03050 10 LANNKVTIFVKFTC------PFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITG----GRTVPRIFFGKTS 79 (108)
T ss_pred hccCCEEEEECCCC------hHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcC----CCCcCEEEECCEE
Confidence 36678999998876 599999999999999 799999986 4456667766554 6899999999999
Q ss_pred EccchHHHHHHhcCcHHHHhcCCCCc
Q 017790 287 IGGAEEIKQLNETGDLAMLLKGFPVV 312 (366)
Q Consensus 287 IGGaDEv~~L~EsGeL~kLL~~~~~~ 312 (366)
|||+|++++|+++|+|.++|+.+++.
T Consensus 80 iGG~ddl~~l~~~g~L~~~l~~~~~~ 105 (108)
T PHA03050 80 IGGYSDLLEIDNMDALGDILSSIGVL 105 (108)
T ss_pred EeChHHHHHHHHcCCHHHHHHHcccc
Confidence 99999999999999999999988754
No 8
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.77 E-value=2.2e-18 Score=139.33 Aligned_cols=86 Identities=23% Similarity=0.410 Sum_probs=75.4
Q ss_pred CCCCcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchH
Q 017790 213 ESNNKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEE 292 (366)
Q Consensus 213 ~~~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDE 292 (366)
+.+++||||+.+... ...|++|.+|+++|+.+|++|+++||..|.+.+++|.+..+ ..++|+|||+|++|||+++
T Consensus 5 i~~~~vvvf~k~~~~-~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g----~~tvP~vfi~g~~iGG~~~ 79 (90)
T cd03028 5 IKENPVVLFMKGTPE-EPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSN----WPTFPQLYVNGELVGGCDI 79 (90)
T ss_pred hccCCEEEEEcCCCC-CCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhC----CCCCCEEEECCEEEeCHHH
Confidence 467899999875322 34577999999999999999999999999888888888765 6899999999999999999
Q ss_pred HHHHHhcCcHH
Q 017790 293 IKQLNETGDLA 303 (366)
Q Consensus 293 v~~L~EsGeL~ 303 (366)
+++||++|+|+
T Consensus 80 l~~l~~~g~L~ 90 (90)
T cd03028 80 VKEMHESGELQ 90 (90)
T ss_pred HHHHHHcCCcC
Confidence 99999999984
No 9
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.75 E-value=7.2e-18 Score=131.14 Aligned_cols=79 Identities=29% Similarity=0.518 Sum_probs=72.4
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHH
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLN 297 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~ 297 (366)
|+||+++.| ++|.+|+++|+++||+|+++||+++++.++++.++.+ ..++|+|||+|++|||++++.+|+
T Consensus 1 v~ly~~~~C------p~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g----~~~vP~i~i~g~~igg~~~~~~~~ 70 (79)
T TIGR02181 1 VTIYTKPYC------PYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSG----RRTVPQIFIGDVHVGGCDDLYALD 70 (79)
T ss_pred CEEEecCCC------hhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhC----CCCcCEEEECCEEEcChHHHHHHH
Confidence 689987654 6999999999999999999999999988889887665 689999999999999999999999
Q ss_pred hcCcHHHHh
Q 017790 298 ETGDLAMLL 306 (366)
Q Consensus 298 EsGeL~kLL 306 (366)
++|+|+++|
T Consensus 71 ~~g~l~~~l 79 (79)
T TIGR02181 71 REGKLDPLL 79 (79)
T ss_pred HcCChhhhC
Confidence 999999886
No 10
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=6.8e-18 Score=142.22 Aligned_cols=93 Identities=30% Similarity=0.415 Sum_probs=82.0
Q ss_pred CCCCCcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccch
Q 017790 212 KESNNKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAE 291 (366)
Q Consensus 212 ~~~~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaD 291 (366)
...+++||||+.+.| ++|.++|.+|..+++.+..++++.++ ...||++++.+.+|.+|||+|||+|++|||++
T Consensus 10 ~i~~~~VVifSKs~C------~~c~~~k~ll~~~~v~~~vvELD~~~-~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~ 82 (104)
T KOG1752|consen 10 MISENPVVIFSKSSC------PYCHRAKELLSDLGVNPKVVELDEDE-DGSEIQKALKKLTGQRTVPNVFIGGKFIGGAS 82 (104)
T ss_pred HhhcCCEEEEECCcC------chHHHHHHHHHhCCCCCEEEEccCCC-CcHHHHHHHHHhcCCCCCCEEEECCEEEcCHH
Confidence 457788999987654 69999999999999999888888774 45689888887888999999999999999999
Q ss_pred HHHHHHhcCcHHHHhcCCCC
Q 017790 292 EIKQLNETGDLAMLLKGFPV 311 (366)
Q Consensus 292 Ev~~L~EsGeL~kLL~~~~~ 311 (366)
++++||.+|+|.++|+.+.+
T Consensus 83 dl~~lh~~G~L~~~l~~~~~ 102 (104)
T KOG1752|consen 83 DLMALHKSGELVPLLKEAGA 102 (104)
T ss_pred HHHHHHHcCCHHHHHHHhhc
Confidence 99999999999999987654
No 11
>PRK10638 glutaredoxin 3; Provisional
Probab=99.74 E-value=1.9e-17 Score=130.99 Aligned_cols=82 Identities=32% Similarity=0.526 Sum_probs=73.8
Q ss_pred CcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHH
Q 017790 216 NKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQ 295 (366)
Q Consensus 216 ~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~ 295 (366)
.+|+||+++.| ++|.+|+.+|+.+||+|+++||+.+.+.++++.+..+ ..++|+||+||++|||++++++
T Consensus 2 ~~v~ly~~~~C------p~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g----~~~vP~i~~~g~~igG~~~~~~ 71 (83)
T PRK10638 2 ANVEIYTKATC------PFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSG----RTTVPQIFIDAQHIGGCDDLYA 71 (83)
T ss_pred CcEEEEECCCC------hhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhC----CCCcCEEEECCEEEeCHHHHHH
Confidence 47999997655 5999999999999999999999988877788877654 6899999999999999999999
Q ss_pred HHhcCcHHHHhc
Q 017790 296 LNETGDLAMLLK 307 (366)
Q Consensus 296 L~EsGeL~kLL~ 307 (366)
|+++|+|.++|+
T Consensus 72 ~~~~g~l~~~~~ 83 (83)
T PRK10638 72 LDARGGLDPLLK 83 (83)
T ss_pred HHHcCCHHHHhC
Confidence 999999999984
No 12
>PTZ00062 glutaredoxin; Provisional
Probab=99.71 E-value=2e-17 Score=153.66 Aligned_cols=136 Identities=19% Similarity=0.295 Sum_probs=102.1
Q ss_pred CCCCccccchhhhhccCCC---hhhHHHHHHhhhccccCCCCCCCCccCCCC-CCCCCCcEEEEEeCCCCCCCCCchHHH
Q 017790 162 TTKPLWKHLSEESLLSKMD---PNVASSYRRALSSRQLGYNNNNHHHHQHRP-TKESNNKIVIYFTSLRGIRRTYEDCCS 237 (366)
Q Consensus 162 ~~~p~~~~~~~e~~~~~~d---p~~~ss~~k~Ls~~~~~~~~~~~~~~~~~~-~~~~~~kVVVYTTSL~gIRKT~~dC~r 237 (366)
...|.+..+.+...+..|+ |.-+.++-+.+...... .....++ ..+..++||||+++..- ...|++|.+
T Consensus 61 ~~vPtfv~~~~g~~i~r~~G~~~~~~~~~~~~~~~~~~~------~~~~~~v~~li~~~~Vvvf~Kg~~~-~p~C~~C~~ 133 (204)
T PTZ00062 61 NEYGVFEFYQNSQLINSLEGCNTSTLVSFIRGWAQKGSS------EDTVEKIERLIRNHKILLFMKGSKT-FPFCRFSNA 133 (204)
T ss_pred ccceEEEEEECCEEEeeeeCCCHHHHHHHHHHHcCCCCH------HHHHHHHHHHHhcCCEEEEEccCCC-CCCChhHHH
Confidence 4588888887777666654 55555554444322110 1111222 35688999999885321 235779999
Q ss_pred HHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHHhcCcHHHHhcC
Q 017790 238 VRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETGDLAMLLKG 308 (366)
Q Consensus 238 aK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~EsGeL~kLL~~ 308 (366)
++.+|+.+||+|.++||..|.+.+++|+++.+ ++|+|||||+|++|||+|++++|+++|+|+++|..
T Consensus 134 ~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg----~~TvPqVfI~G~~IGG~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 134 VVNMLNSSGVKYETYNIFEDPDLREELKVYSN----WPTYPQLYVNGELIGGHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred HHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhC----CCCCCeEEECCEEEcChHHHHHHHHcCChhhhhhh
Confidence 99999999999999999999888888887654 89999999999999999999999999999999853
No 13
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.3e-16 Score=133.77 Aligned_cols=90 Identities=22% Similarity=0.486 Sum_probs=79.4
Q ss_pred CCCCCcEEEEEeCCCCCCCCCchHH---HHHHHHHhCC-CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEE
Q 017790 212 KESNNKIVIYFTSLRGIRRTYEDCC---SVRMIFKSYR-VGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHI 287 (366)
Q Consensus 212 ~~~~~kVVVYTTSL~gIRKT~~dC~---raK~IL~~~g-V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~I 287 (366)
.++.++||||++... .++.|. +|-+||..+| ++|..+||-.|++.|+.|++... |+|+||+||+|++|
T Consensus 11 ~i~~n~VvLFMKGtp----~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~----WPT~PQLyi~GEfv 82 (105)
T COG0278 11 QIKENPVVLFMKGTP----EFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSN----WPTFPQLYVNGEFV 82 (105)
T ss_pred HhhcCceEEEecCCC----CCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcC----CCCCceeeECCEEe
Confidence 468899999998754 455554 8999999999 89999999999988888887654 99999999999999
Q ss_pred ccchHHHHHHhcCcHHHHhcCC
Q 017790 288 GGAEEIKQLNETGDLAMLLKGF 309 (366)
Q Consensus 288 GGaDEv~~L~EsGeL~kLL~~~ 309 (366)
||+|.+++|.++|+|+++|+.+
T Consensus 83 GG~DIv~Em~q~GELq~~l~~~ 104 (105)
T COG0278 83 GGCDIVREMYQSGELQTLLKEA 104 (105)
T ss_pred ccHHHHHHHHHcchHHHHHHhc
Confidence 9999999999999999999764
No 14
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.68 E-value=2.9e-16 Score=120.05 Aligned_cols=74 Identities=30% Similarity=0.540 Sum_probs=66.4
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCC-cccEEEeCCEEEccchHHHH
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAI-TLPQVFIRGKHIGGAEEIKQ 295 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~-TVPqVFVdG~~IGGaDEv~~ 295 (366)
+|+||+++.| ++|.+|+.+|+.+||+|+++||+.+.+.+++|.+..+ .. ++|+|||+|++|||++++++
T Consensus 1 ~i~ly~~~~C------p~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~----~~~~vP~v~i~g~~igg~~~~~~ 70 (75)
T cd03418 1 KVEIYTKPNC------PYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSG----GRRTVPQIFIGDVHIGGCDDLYA 70 (75)
T ss_pred CEEEEeCCCC------hHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC----CCCccCEEEECCEEEeChHHHHH
Confidence 5899997655 5999999999999999999999998888888877765 34 89999999999999999999
Q ss_pred HHhcC
Q 017790 296 LNETG 300 (366)
Q Consensus 296 L~EsG 300 (366)
|+++|
T Consensus 71 ~~~~g 75 (75)
T cd03418 71 LERKG 75 (75)
T ss_pred HHhCc
Confidence 99987
No 15
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.67 E-value=3.1e-16 Score=120.91 Aligned_cols=73 Identities=29% Similarity=0.523 Sum_probs=66.4
Q ss_pred CcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHH
Q 017790 216 NKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQ 295 (366)
Q Consensus 216 ~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~ 295 (366)
++|+||+++.| ++|.+|+++|+.+||+|+++||..+.+.+++|.++.+ ..++|+|||||++|||++|+++
T Consensus 1 ~~v~ly~~~~C------~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g----~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 1 GRVTIYSRLGC------EDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTG----SSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred CEEEEEecCCC------hhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC----CCCcCEEEECCEEEeCHHHHHh
Confidence 47999998765 5999999999999999999999999988999988876 5789999999999999999999
Q ss_pred HHh
Q 017790 296 LNE 298 (366)
Q Consensus 296 L~E 298 (366)
|+|
T Consensus 71 ~~~ 73 (73)
T cd03027 71 LEE 73 (73)
T ss_pred hcC
Confidence 875
No 16
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.63 E-value=9.7e-16 Score=118.50 Aligned_cols=82 Identities=30% Similarity=0.479 Sum_probs=66.5
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCc--EEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHH
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVG--VDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQ 295 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~--ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~ 295 (366)
|++|++++| ++|.+++.+|++++++ |..++|+.+.. ..++++.+...++..++|+|||+|++|||++++++
T Consensus 1 V~~f~~~~C------p~C~~~~~~L~~~~i~~~~~~~~v~~~~~-~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~ 73 (84)
T TIGR02180 1 VVVFSKSYC------PYCKKAKEILAKLNVKPAYEVVELDQLSN-GSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLA 73 (84)
T ss_pred CEEEECCCC------hhHHHHHHHHHHcCCCCCCEEEEeeCCCC-hHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHH
Confidence 689998776 4999999999999999 88888876531 23333333323347899999999999999999999
Q ss_pred HHhcCcHHHHh
Q 017790 296 LNETGDLAMLL 306 (366)
Q Consensus 296 L~EsGeL~kLL 306 (366)
|+++|+|.++|
T Consensus 74 ~~~~g~l~~~~ 84 (84)
T TIGR02180 74 LYKSGKLAELL 84 (84)
T ss_pred HHHcCChhhhC
Confidence 99999999886
No 17
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.58 E-value=6.8e-15 Score=113.75 Aligned_cols=79 Identities=28% Similarity=0.490 Sum_probs=66.5
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCH---HHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHH
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDS---SYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEI 293 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~---e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv 293 (366)
+|++|++.+| ++|.+|+.+|+.+++.|.+++++.+. +.++++++.. |..++|+|||+|++|||++++
T Consensus 1 ~v~~y~~~~C------p~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----g~~~~P~v~~~g~~igg~~~~ 70 (82)
T cd03419 1 PVVVFSKSYC------PYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELT----GQRTVPNVFIGGKFIGGCDDL 70 (82)
T ss_pred CEEEEEcCCC------HHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHh----CCCCCCeEEECCEEEcCHHHH
Confidence 5899997655 59999999999999999988887663 3345555544 478999999999999999999
Q ss_pred HHHHhcCcHHHH
Q 017790 294 KQLNETGDLAML 305 (366)
Q Consensus 294 ~~L~EsGeL~kL 305 (366)
++|.++|+|+++
T Consensus 71 ~~~~~~g~l~~~ 82 (82)
T cd03419 71 MALHKSGKLVKL 82 (82)
T ss_pred HHHHHcCCccCC
Confidence 999999999764
No 18
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.2e-14 Score=116.24 Aligned_cols=78 Identities=27% Similarity=0.526 Sum_probs=64.2
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHH
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQL 296 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L 296 (366)
.|+||+++. |++|.+||++|+.+|+.|+++|+.++.. ++.++.+...+|.+|||||||||++|||++++.++
T Consensus 2 ~v~iyt~~~------CPyC~~ak~~L~~~g~~~~~i~~~~~~~--~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPG------CPYCKRAKRLLDRKGVDYEEIDVDDDEP--EEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCC------CchHHHHHHHHHHcCCCcEEEEecCCcH--HHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHH
Confidence 589999765 4699999999999999999999998873 22223332233589999999999999999999999
Q ss_pred HhcCcH
Q 017790 297 NETGDL 302 (366)
Q Consensus 297 ~EsGeL 302 (366)
+..|.|
T Consensus 74 ~~~~~l 79 (80)
T COG0695 74 EAKGKL 79 (80)
T ss_pred HhhccC
Confidence 988876
No 19
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.55 E-value=4.1e-14 Score=104.37 Aligned_cols=72 Identities=36% Similarity=0.627 Sum_probs=65.1
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHH
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQL 296 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L 296 (366)
+|+||++.+| ++|.+|+.+|+.++++|.++|+..+.+.+++|+++.+ ..++|+||++|++|||++++++|
T Consensus 1 ~v~ly~~~~C------p~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~----~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTC------PYCKRAKRLLESLGIEFEEIDILEDGELREELKELSG----WPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCC------HHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhC----CCCcCEEEECCEEEecHHHHHHh
Confidence 5899998765 5999999999999999999999999888888888765 58999999999999999999998
Q ss_pred Hh
Q 017790 297 NE 298 (366)
Q Consensus 297 ~E 298 (366)
++
T Consensus 71 ~~ 72 (72)
T cd02066 71 HE 72 (72)
T ss_pred hC
Confidence 75
No 20
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.54 E-value=3.6e-14 Score=108.89 Aligned_cols=70 Identities=21% Similarity=0.438 Sum_probs=59.5
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHH
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQL 296 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L 296 (366)
+|+||+++.| ++|.+||++|+++||+|+++||+.+. ..++++++. |..++|+|||||++|||++++.++
T Consensus 2 ~v~lys~~~C------p~C~~ak~~L~~~~i~~~~~~v~~~~-~~~~~~~~~----g~~~vP~ifi~g~~igg~~~l~~~ 70 (72)
T cd03029 2 SVSLFTKPGC------PFCARAKAALQENGISYEEIPLGKDI-TGRSLRAVT----GAMTVPQVFIDGELIGGSDDLEKY 70 (72)
T ss_pred eEEEEECCCC------HHHHHHHHHHHHcCCCcEEEECCCCh-hHHHHHHHh----CCCCcCeEEECCEEEeCHHHHHHH
Confidence 6999997654 69999999999999999999998876 345565544 368999999999999999999887
Q ss_pred H
Q 017790 297 N 297 (366)
Q Consensus 297 ~ 297 (366)
.
T Consensus 71 l 71 (72)
T cd03029 71 F 71 (72)
T ss_pred h
Confidence 4
No 21
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.53 E-value=2.6e-14 Score=119.67 Aligned_cols=91 Identities=29% Similarity=0.430 Sum_probs=73.2
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHc-----CCCCCCcccEEEeCCEEEccch
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLG-----VEGKAITLPQVFIRGKHIGGAE 291 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg-----~~tg~~TVPqVFVdG~~IGGaD 291 (366)
.|.||+||+.|.++....+.++..||++++|+|+++||++|++.|+.|++..+ ...+..-+||||+|++|+|++|
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 37899999999888888999999999999999999999999999999999873 1223455689999999999999
Q ss_pred HHHHHHhcCcHHHHhc
Q 017790 292 EIKQLNETGDLAMLLK 307 (366)
Q Consensus 292 Ev~~L~EsGeL~kLL~ 307 (366)
++.+++|+|+|.+.|+
T Consensus 82 ~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 82 DFEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHHCTT-HHHHHT
T ss_pred HHHHHHhhCHHHHHhC
Confidence 9999999999999985
No 22
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.53 E-value=6.1e-14 Score=110.34 Aligned_cols=76 Identities=25% Similarity=0.422 Sum_probs=63.4
Q ss_pred CCCCCCcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccc
Q 017790 211 TKESNNKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGA 290 (366)
Q Consensus 211 ~~~~~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGa 290 (366)
++.+.++|+||++++| ++|.+||++|+.+||+|+++||+.+.+ .+++.+.. |..++|+|||||++|||+
T Consensus 3 ~~~~~~~V~ly~~~~C------p~C~~ak~~L~~~gi~y~~idi~~~~~-~~~~~~~~----g~~~vP~i~i~g~~igG~ 71 (79)
T TIGR02190 3 QARKPESVVVFTKPGC------PFCAKAKATLKEKGYDFEEIPLGNDAR-GRSLRAVT----GATTVPQVFIGGKLIGGS 71 (79)
T ss_pred CcCCCCCEEEEECCCC------HhHHHHHHHHHHcCCCcEEEECCCChH-HHHHHHHH----CCCCcCeEEECCEEEcCH
Confidence 3457889999997765 599999999999999999999987754 34565544 478999999999999999
Q ss_pred hHHHHHH
Q 017790 291 EEIKQLN 297 (366)
Q Consensus 291 DEv~~L~ 297 (366)
++++++.
T Consensus 72 ~~l~~~l 78 (79)
T TIGR02190 72 DELEAYL 78 (79)
T ss_pred HHHHHHh
Confidence 9998753
No 23
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=5.1e-14 Score=132.52 Aligned_cols=91 Identities=23% Similarity=0.430 Sum_probs=78.6
Q ss_pred CCCCCCcEEEEEeCCCCCCCCCchHH---HHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEE
Q 017790 211 TKESNNKIVIYFTSLRGIRRTYEDCC---SVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHI 287 (366)
Q Consensus 211 ~~~~~~kVVVYTTSL~gIRKT~~dC~---raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~I 287 (366)
..+..++|+||+++.. .++.|. ++..||+.++|+|..+||..|++.|+.|++.. .|+|+|||||+|++|
T Consensus 134 ~lv~a~~v~lFmKG~p----~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fS----dWPTfPQlyI~GEFi 205 (227)
T KOG0911|consen 134 KLVKAKPVMLFMKGTP----EEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFS----DWPTFPQLYVKGEFI 205 (227)
T ss_pred HhcccCeEEEEecCCC----CcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhc----CCCCccceeECCEec
Confidence 4568889999998754 455555 79999999999999999999988777776654 499999999999999
Q ss_pred ccchHHHHHHhcCcHHHHhcCC
Q 017790 288 GGAEEIKQLNETGDLAMLLKGF 309 (366)
Q Consensus 288 GGaDEv~~L~EsGeL~kLL~~~ 309 (366)
||+|.+..||++|+|...|+++
T Consensus 206 GGlDIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 206 GGLDILKEMHEKGELVYTLKEA 227 (227)
T ss_pred cCcHHHHHHhhcccHHHHhhcC
Confidence 9999999999999999999763
No 24
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.50 E-value=1.3e-13 Score=110.60 Aligned_cols=75 Identities=23% Similarity=0.415 Sum_probs=62.9
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCC-----CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchH
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYR-----VGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEE 292 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~g-----V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDE 292 (366)
|+||++++| ++|.+||++|+.++ +.|.++||..+...+++|.++.+. +..+||+|||||++|||+++
T Consensus 2 V~vys~~~C------p~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~--~~~tVP~ifi~g~~igG~~d 73 (86)
T TIGR02183 2 VVIFGRPGC------PYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGK--PVETVPQIFVDEKHVGGCTD 73 (86)
T ss_pred EEEEeCCCC------ccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCC--CCCCcCeEEECCEEecCHHH
Confidence 789997765 59999999999984 679999998766567778877652 24799999999999999999
Q ss_pred HHHHHhcC
Q 017790 293 IKQLNETG 300 (366)
Q Consensus 293 v~~L~EsG 300 (366)
+++|++++
T Consensus 74 l~~~~~~~ 81 (86)
T TIGR02183 74 FEQLVKEN 81 (86)
T ss_pred HHHHHHhc
Confidence 99998864
No 25
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.50 E-value=1.6e-13 Score=108.90 Aligned_cols=75 Identities=21% Similarity=0.356 Sum_probs=65.0
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHh-----CCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccch
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKS-----YRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAE 291 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~-----~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaD 291 (366)
+|+||++++| ++|.+|+++|+. .++.|+++||..+...+++|.+..+. +..++|||||||++|||++
T Consensus 2 ~v~iy~~~~C------~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~--~~~~vP~ifi~g~~igg~~ 73 (85)
T PRK11200 2 FVVIFGRPGC------PYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGK--PVETVPQIFVDQKHIGGCT 73 (85)
T ss_pred EEEEEeCCCC------hhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCC--CCCcCCEEEECCEEEcCHH
Confidence 6899997655 599999999999 79999999999887667888887762 3479999999999999999
Q ss_pred HHHHHHhc
Q 017790 292 EIKQLNET 299 (366)
Q Consensus 292 Ev~~L~Es 299 (366)
++.++++.
T Consensus 74 ~~~~~~~~ 81 (85)
T PRK11200 74 DFEAYVKE 81 (85)
T ss_pred HHHHHHHH
Confidence 99998764
No 26
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.41 E-value=9.5e-13 Score=133.13 Aligned_cols=88 Identities=22% Similarity=0.352 Sum_probs=73.4
Q ss_pred CcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHc-----CCCCCCcccEEEeCCEEEccc
Q 017790 216 NKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLG-----VEGKAITLPQVFIRGKHIGGA 290 (366)
Q Consensus 216 ~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg-----~~tg~~TVPqVFVdG~~IGGa 290 (366)
.+|+||++++| ++|.+||++|+.+||+|+++||+.++.. .++.+..+ ..+|..+||||||||++|||+
T Consensus 2 ~~V~vys~~~C------p~C~~aK~~L~~~gi~~~~idi~~~~~~-~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf 74 (410)
T PRK12759 2 VEVRIYTKTNC------PFCDLAKSWFGANDIPFTQISLDDDVKR-AEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGY 74 (410)
T ss_pred CcEEEEeCCCC------HHHHHHHHHHHHCCCCeEEEECCCChhH-HHHHHHHhhccccccCCCCccCeEEECCEEEeCc
Confidence 47999998866 5999999999999999999999977643 34433332 235688999999999999999
Q ss_pred hHHHHHHhcCcHHHHhcCCCCc
Q 017790 291 EEIKQLNETGDLAMLLKGFPVV 312 (366)
Q Consensus 291 DEv~~L~EsGeL~kLL~~~~~~ 312 (366)
+++++ .+|+|.++|++.+.-
T Consensus 75 ~~l~~--~~g~l~~~~~~~~~~ 94 (410)
T PRK12759 75 DNLMA--RAGEVIARVKGSSLT 94 (410)
T ss_pred hHHHH--HhCCHHHHhcCCccc
Confidence 99987 999999999987653
No 27
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.39 E-value=1.9e-12 Score=96.20 Aligned_cols=60 Identities=33% Similarity=0.563 Sum_probs=54.7
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHI 287 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~I 287 (366)
|+||++. +|++|.+++++|+++|++|+++||+.+++.+++|++..+ ..++|+|||||++|
T Consensus 1 V~vy~~~------~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g----~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKP------GCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSG----VRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEEST------TSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHS----SSSSSEEEETTEEE
T ss_pred cEEEEcC------CCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcC----CCccCEEEECCEEC
Confidence 7899854 567999999999999999999999999989999999875 68999999999987
No 28
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.12 E-value=2e-10 Score=88.56 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=54.5
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCE-EEccchH
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGK-HIGGAEE 292 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~-~IGGaDE 292 (366)
|+||+.+. |++|.+||++|+++||+|+++||..|++.++++++ ++ ..+||+||++|. +|||++.
T Consensus 1 v~ly~~~~------Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~-~g----~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKNN------CVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKA-QG----FRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCCC------CHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cC----CcccCEEEECCCcEEeccCH
Confidence 67998654 56999999999999999999999999888777764 23 579999999775 9999976
No 29
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.10 E-value=4.6e-10 Score=89.82 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=56.7
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchH
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEE 292 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDE 292 (366)
+|+||++..| ++|.++|.+|+.+||+|+++||+.+++..++++. . |..++|+|++++..|+|++.
T Consensus 2 ~v~lYt~~~C------p~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~----g~~~vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 2 RITIYTRNDC------VQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-Q----GFRQLPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEEeCCCC------HhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-c----CCCCcCEEEECCEEEecCCH
Confidence 6999997655 5999999999999999999999999877777754 2 36799999999999999976
No 30
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.93 E-value=8.8e-09 Score=76.35 Aligned_cols=66 Identities=27% Similarity=0.410 Sum_probs=57.7
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchH
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEE 292 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDE 292 (366)
+|+||+.++|+ .|.+++.+|+..++.|.++|++.+.+.++++.+..+ ..++|.++++|+.++|++.
T Consensus 1 ~i~lf~~~~C~------~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~----~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTPWCP------PCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLG----QRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCCCCh------hHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhC----CCcccEEEECCEEEeeCCH
Confidence 48899987765 999999999999999999999988877788877775 5789999999999999855
No 31
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.85 E-value=2.3e-08 Score=74.14 Aligned_cols=66 Identities=21% Similarity=0.371 Sum_probs=56.7
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchH
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEE 292 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDE 292 (366)
+|++|+..+| ++|.+++.+|+.++++|..+|++.+....+++++..+ ..++|.|+++|+.|+|.+.
T Consensus 1 ~v~l~~~~~c------~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~----~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDC------PYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNG----YRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCC------hhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcC----CcccCEEEECCEEEecCCH
Confidence 4889987665 5999999999999999999999988777777776543 5789999999999999876
No 32
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.57 E-value=5.6e-07 Score=68.16 Aligned_cols=67 Identities=18% Similarity=0.278 Sum_probs=53.4
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe-CCEEEccchH
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI-RGKHIGGAEE 292 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV-dG~~IGGaDE 292 (366)
+|+||++++|+ +|.+++.+|+.++++|+.+|++.+....++++++-. +..++|+|++ +|+.+.....
T Consensus 1 ~v~ly~~~~C~------~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~---~~~~vP~i~~~~g~~l~~~~~ 68 (77)
T TIGR02200 1 TITVYGTTWCG------YCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNN---GNMTVPTVKFADGSFLTNPSA 68 (77)
T ss_pred CEEEEECCCCh------hHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhC---CCceeCEEEECCCeEecCCCH
Confidence 58999988775 999999999999999999999888776666666531 3579999976 6677765543
No 33
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.27 E-value=2.7e-06 Score=63.75 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=46.7
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEcc
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSY-----RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGG 289 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~-----gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGG 289 (366)
+|++|++++|+ +|.+++.+|+.+ ++.|.++|++.++ ++.+.++ ..++|+|||+|++++-
T Consensus 2 ~v~~f~~~~C~------~C~~~~~~l~~l~~~~~~i~~~~id~~~~~----~l~~~~~----i~~vPti~i~~~~~~~ 65 (67)
T cd02973 2 NIEVFVSPTCP------YCPDAVQAANRIAALNPNISAEMIDAAEFP----DLADEYG----VMSVPAIVINGKVEFV 65 (67)
T ss_pred EEEEEECCCCC------CcHHHHHHHHHHHHhCCceEEEEEEcccCH----hHHHHcC----CcccCEEEECCEEEEe
Confidence 58999988765 999999999875 6889999987653 4555554 5689999999998863
No 34
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=1.9e-06 Score=72.83 Aligned_cols=95 Identities=20% Similarity=0.186 Sum_probs=80.8
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcC----CCCCCcccEEEeCCEEEccchH
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGV----EGKAITLPQVFIRGKHIGGAEE 292 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~----~tg~~TVPqVFVdG~~IGGaDE 292 (366)
.|.||+++..|.+.+...-.++-.+|+...+.++++|+.+.++.++.+...+.. ..|....||||-+.+|.||+|.
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~ 82 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL 82 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence 478999999987766666778999999999999999999988777777655432 3467789999999999999999
Q ss_pred HHHHHhcCcHHHHhcCCCC
Q 017790 293 IKQLNETGDLAMLLKGFPV 311 (366)
Q Consensus 293 v~~L~EsGeL~kLL~~~~~ 311 (366)
..+..|++.|.+.|.-++.
T Consensus 83 F~ea~E~ntl~eFL~lap~ 101 (108)
T KOG4023|consen 83 FFEAVEQNTLQEFLGLAPP 101 (108)
T ss_pred HHHHHHHHHHHHHHccCCC
Confidence 9999999999999987764
No 35
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.01 E-value=4.6e-05 Score=59.28 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=54.6
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe--CCEEEccchHHHH
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI--RGKHIGGAEEIKQ 295 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV--dG~~IGGaDEv~~ 295 (366)
++||+.+.| ++|.+|+.+|+.+||+|++++|..+....+++.+.- +..++|.+.. +|..+.+...+.+
T Consensus 2 ~~Ly~~~~s------p~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~----p~~~vP~l~~~~~~~~l~es~~I~~ 71 (77)
T cd03041 2 LELYEFEGS------PFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKG----GKVQVPYLVDPNTGVQMFESADIVK 71 (77)
T ss_pred ceEecCCCC------chHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhC----CCCcccEEEeCCCCeEEEcHHHHHH
Confidence 678987655 599999999999999999999986654556666532 3578999976 3678888888777
Q ss_pred HHh
Q 017790 296 LNE 298 (366)
Q Consensus 296 L~E 298 (366)
..+
T Consensus 72 yL~ 74 (77)
T cd03041 72 YLF 74 (77)
T ss_pred HHH
Confidence 554
No 36
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=97.90 E-value=4.4e-05 Score=54.76 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=51.9
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHH
Q 017790 219 VIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQL 296 (366)
Q Consensus 219 VVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L 296 (366)
.||+... ++.|.+++.+|+.+|++|+.++++.+.....++++ ..+..++|.++++|..+++...+.+.
T Consensus 2 ~ly~~~~------~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPG------SPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLA----LNPLGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCC------CccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHh----cCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 4676554 45999999999999999999998765432223443 33467999999999999998887654
No 37
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=97.86 E-value=0.00012 Score=56.31 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=52.8
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeC----CEEEccchH
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIR----GKHIGGAEE 292 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVd----G~~IGGaDE 292 (366)
+|.||+...| ++|.+|+.+|+.+||+|++++++.. .+.+++ . .+..++|.++++ |..|.....
T Consensus 1 ~i~Ly~~~~~------p~c~kv~~~L~~~gi~y~~~~~~~~--~~~~~~-~----~~~~~vP~l~~~~~~~~~~l~eS~~ 67 (77)
T cd03040 1 KITLYQYKTC------PFCCKVRAFLDYHGIPYEVVEVNPV--SRKEIK-W----SSYKKVPILRVESGGDGQQLVDSSV 67 (77)
T ss_pred CEEEEEcCCC------HHHHHHHHHHHHCCCceEEEECCch--hHHHHH-H----hCCCccCEEEECCCCCccEEEcHHH
Confidence 5789987655 5999999999999999999998542 344552 2 235789999987 778888887
Q ss_pred HHHHHh
Q 017790 293 IKQLNE 298 (366)
Q Consensus 293 v~~L~E 298 (366)
+.+..+
T Consensus 68 I~~yL~ 73 (77)
T cd03040 68 IISTLK 73 (77)
T ss_pred HHHHHH
Confidence 776544
No 38
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.83 E-value=0.0001 Score=55.94 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=51.6
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeC-CEEEccchHHHHHH
Q 017790 219 VIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIR-GKHIGGAEEIKQLN 297 (366)
Q Consensus 219 VVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVd-G~~IGGaDEv~~L~ 297 (366)
.||+..+| ++|.+||.+|..+|++|+++.++.+.. ... .+.. +..++|.++++ |..+++...+.+..
T Consensus 2 ~Ly~~~~~------p~~~rvr~~L~~~gl~~~~~~~~~~~~-~~~-~~~~----~~~~vP~L~~~~~~~l~es~aI~~yL 69 (71)
T cd03037 2 KLYIYEHC------PFCVKARMIAGLKNIPVEQIILQNDDE-ATP-IRMI----GAKQVPILEKDDGSFMAESLDIVAFI 69 (71)
T ss_pred ceEecCCC------cHhHHHHHHHHHcCCCeEEEECCCCch-HHH-HHhc----CCCccCEEEeCCCeEeehHHHHHHHH
Confidence 47876554 599999999999999999998875532 122 2222 35689999997 89999999988765
Q ss_pred h
Q 017790 298 E 298 (366)
Q Consensus 298 E 298 (366)
+
T Consensus 70 ~ 70 (71)
T cd03037 70 D 70 (71)
T ss_pred h
Confidence 4
No 39
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=97.47 E-value=0.00068 Score=54.31 Aligned_cols=75 Identities=12% Similarity=0.080 Sum_probs=55.9
Q ss_pred CCCCCcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeC-CEEEccc
Q 017790 212 KESNNKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIR-GKHIGGA 290 (366)
Q Consensus 212 ~~~~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVd-G~~IGGa 290 (366)
+-..+.+.||+...| .+|.+++.+|+.+|++|+.++++... ..+++.+.. ...++|.+.++ |..|...
T Consensus 13 ~~~~~~~~Ly~~~~s------p~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~n----p~~~vPvL~~~~g~~l~eS 81 (89)
T cd03055 13 PPVPGIIRLYSMRFC------PYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKN----PQGKVPALEIDEGKVVYES 81 (89)
T ss_pred CCCCCcEEEEeCCCC------chHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhC----CCCCcCEEEECCCCEEECH
Confidence 345567999986654 59999999999999999999987643 223454432 35789999998 8888887
Q ss_pred hHHHHHH
Q 017790 291 EEIKQLN 297 (366)
Q Consensus 291 DEv~~L~ 297 (366)
..+.+..
T Consensus 82 ~aI~~yL 88 (89)
T cd03055 82 LIICEYL 88 (89)
T ss_pred HHHHHhh
Confidence 7776653
No 40
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=97.39 E-value=0.00083 Score=50.54 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=51.2
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHH
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLN 297 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~ 297 (366)
++||+...| ++|.+++.+|+.+|++|++++++... ...++++.. ...++|.+..+|..+.....+.+..
T Consensus 1 ~~ly~~~~~------~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~----p~~~vP~l~~~~~~l~es~aI~~yL 69 (73)
T cd03059 1 MTLYSGPDD------VYSHRVRIVLAEKGVSVEIIDVDPDN-PPEDLAELN----PYGTVPTLVDRDLVLYESRIIMEYL 69 (73)
T ss_pred CEEEECCCC------hhHHHHHHHHHHcCCccEEEEcCCCC-CCHHHHhhC----CCCCCCEEEECCEEEEcHHHHHHHH
Confidence 368876544 58999999999999999999887542 234555532 2468999988888777777776654
Q ss_pred h
Q 017790 298 E 298 (366)
Q Consensus 298 E 298 (366)
+
T Consensus 70 ~ 70 (73)
T cd03059 70 D 70 (73)
T ss_pred H
Confidence 3
No 41
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.38 E-value=0.00025 Score=59.71 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=40.6
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHc
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLG 269 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg 269 (366)
|.||+++.| ..|.+|+++|+.+|++|+++|+..++..++||.+.++
T Consensus 1 i~iY~~~~C------~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~ 46 (111)
T cd03036 1 LKFYEYPKC------STCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLE 46 (111)
T ss_pred CEEEECCCC------HHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHH
Confidence 579997654 5999999999999999999999998888888988776
No 42
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.34 E-value=0.0003 Score=58.02 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=41.0
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcC
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGV 270 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~ 270 (366)
|+||+.+.| ..|.+|+++|+++|+.|+++||..++..+++|+++++.
T Consensus 1 i~iY~~~~C------~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~ 47 (105)
T cd02977 1 ITIYGNPNC------STSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAK 47 (105)
T ss_pred CEEEECCCC------HHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHh
Confidence 579987654 59999999999999999999999888788899888863
No 43
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.25 E-value=0.002 Score=49.27 Aligned_cols=55 Identities=16% Similarity=0.325 Sum_probs=39.3
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHh----CC--CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCE
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKS----YR--VGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGK 285 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~----~g--V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~ 285 (366)
+|+||+.++|+ +|..++.+|+. ++ +.+..+|+..+. ++.+.++ ...+|.++++|+
T Consensus 2 ~v~~f~~~~C~------~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~----~~~~~~~----v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCP------YCPAAKRVVEEVAKEMGDAVEVEYINVMENP----QKAMEYG----IMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCc------chHHHHHHHHHHHHHhcCceEEEEEeCccCH----HHHHHcC----CccCCEEEECCE
Confidence 48899988775 99988888753 44 566777876554 3333343 568999999996
No 44
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.21 E-value=0.00076 Score=58.68 Aligned_cols=46 Identities=13% Similarity=0.283 Sum_probs=40.9
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHc
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLG 269 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg 269 (366)
|+||++..| ..|.+|+++|+++||.|+++|+..++..++||++.+.
T Consensus 2 i~iY~~~~C------~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~ 47 (131)
T PRK01655 2 VTLFTSPSC------TSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILR 47 (131)
T ss_pred EEEEeCCCC------hHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHH
Confidence 789997655 5999999999999999999999999888888888775
No 45
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=97.19 E-value=0.0013 Score=49.17 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=47.7
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCH--HHHHHHHHHHcCCCCCCcccEEEe-CCEEEccchHHHH
Q 017790 219 VIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDS--SYRKELQDLLGVEGKAITLPQVFI-RGKHIGGAEEIKQ 295 (366)
Q Consensus 219 VVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~--e~reEL~elLg~~tg~~TVPqVFV-dG~~IGGaDEv~~ 295 (366)
.||+...| .+|.+++.+|..+|++|+.+.++... ....++.+.. ...++|.+.+ +|..+.....+.+
T Consensus 2 ~Ly~~~~s------~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~----p~~~vP~l~~~~~~~l~es~aI~~ 71 (74)
T cd03051 2 KLYDSPTA------PNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKN----PAGTVPVLELDDGTVITESVAICR 71 (74)
T ss_pred EEEeCCCC------cchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhC----CCCCCCEEEeCCCCEEecHHHHHH
Confidence 58876544 59999999999999999988886432 2234454433 3578999997 5566666665554
Q ss_pred H
Q 017790 296 L 296 (366)
Q Consensus 296 L 296 (366)
.
T Consensus 72 y 72 (74)
T cd03051 72 Y 72 (74)
T ss_pred H
Confidence 3
No 46
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=97.15 E-value=0.0021 Score=48.88 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=49.3
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeC-CEEEccchHHHH
Q 017790 219 VIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIR-GKHIGGAEEIKQ 295 (366)
Q Consensus 219 VVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVd-G~~IGGaDEv~~ 295 (366)
+||+...| .+|.+++.+|..+|++|+.++|+.... .+++.+.- ...+||.+..+ |..|.....+.+
T Consensus 2 ~ly~~~~~------p~~~rv~~~L~~~gl~~e~~~v~~~~~-~~~~~~~n----p~~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSFRRC------PYAMRARMALLLAGITVELREVELKNK-PAEMLAAS----PKGTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEecCCC------cHHHHHHHHHHHcCCCcEEEEeCCCCC-CHHHHHHC----CCCCCCEEEECCCcEEecHHHHHH
Confidence 68887665 499999999999999999999876432 24555432 35799999986 888776666544
No 47
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.04 E-value=0.0054 Score=48.71 Aligned_cols=53 Identities=23% Similarity=0.429 Sum_probs=41.1
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCC----CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCC
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYR----VGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRG 284 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~g----V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG 284 (366)
+|++|++. .|.-|..|+.+|+... +.++++||+.|++ |.++.+ ..+|.++++|
T Consensus 1 ~l~l~~k~------~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~-----~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKP------GCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYG-----YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-S------SSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSC-----TSTSEEEETT
T ss_pred CEEEEcCC------CCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhc-----CCCCEEEEcC
Confidence 58999854 5679999999999654 6689999997653 666665 5799999999
No 48
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=97.03 E-value=0.0031 Score=47.66 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=49.5
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCH--HHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHH
Q 017790 219 VIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDS--SYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQL 296 (366)
Q Consensus 219 VVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~--e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L 296 (366)
.||+...+ +.|.+++.+|+.+|++|+.++++... ...+++.+.. ...++|.+..+|..|-....+.+.
T Consensus 2 ~Ly~~~~~------~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~----p~~~vP~l~~~~~~l~es~aI~~y 71 (74)
T cd03045 2 DLYYLPGS------PPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLN----PQHTVPTLVDNGFVLWESHAILIY 71 (74)
T ss_pred EEEeCCCC------CcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhC----cCCCCCEEEECCEEEEcHHHHHHH
Confidence 58886654 48999999999999999998887532 2335555432 356899998888777766666553
No 49
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.01 E-value=0.0021 Score=49.60 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=53.6
Q ss_pred EEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHHh
Q 017790 220 IYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNE 298 (366)
Q Consensus 220 VYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~E 298 (366)
+|....+ .+|.+|+.+|+.+||+|+.++|..... +.++.+.-. ..+||.+..||..|.+...+.+..+
T Consensus 1 Ly~~~~S------p~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p----~~~vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGS------PYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNP----KGKVPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEETTS------HHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHST----TSBSSEEEETTEEEESHHHHHHHHH
T ss_pred CCCcCCC------hHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcc----cccceEEEECCEEEeCHHHHHHHHH
Confidence 4665544 589999999999999999999986543 456655443 5799999999999999988877544
No 50
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.95 E-value=0.0017 Score=54.96 Aligned_cols=46 Identities=26% Similarity=0.354 Sum_probs=40.6
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHc
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLG 269 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg 269 (366)
|.||+.+. |..|.+|+++|+.+||.|+++|+..++..+++|.+.+.
T Consensus 1 i~iY~~~~------C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~ 46 (117)
T TIGR01617 1 IKVYGSPN------CTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILS 46 (117)
T ss_pred CEEEeCCC------CHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHH
Confidence 56898654 56999999999999999999999998888999988876
No 51
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.95 E-value=0.0045 Score=46.27 Aligned_cols=67 Identities=15% Similarity=0.254 Sum_probs=49.1
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCH--HHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHH
Q 017790 219 VIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDS--SYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQ 295 (366)
Q Consensus 219 VVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~--e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~ 295 (366)
.+|+...+ +.|.+++.+|+.+|++|++++++... ...+++.+.. ...++|.+..+|..|.....+.+
T Consensus 2 ~Ly~~~~~------~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~----p~~~vP~l~~~~~~i~es~aI~~ 70 (73)
T cd03056 2 KLYGFPLS------GNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALN----PNGEVPVLELDGRVLAESNAILV 70 (73)
T ss_pred EEEeCCCC------ccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhC----CCCCCCEEEECCEEEEcHHHHHH
Confidence 57876544 48999999999999999999987532 2234454432 25689999999988877766654
No 52
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.94 E-value=0.0014 Score=55.06 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=40.8
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHc
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLG 269 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg 269 (366)
|+||+.+.| ..|.+|+++|+.+|+.|+++|+..++-..+||++.+.
T Consensus 1 i~iy~~~~C------~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~ 46 (105)
T cd03035 1 ITLYGIKNC------DTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLA 46 (105)
T ss_pred CEEEeCCCC------HHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence 579997765 4999999999999999999999988878888888886
No 53
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.91 E-value=0.0022 Score=54.11 Aligned_cols=46 Identities=17% Similarity=0.410 Sum_probs=40.3
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHc
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLG 269 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg 269 (366)
|.||+... |..|.+|+++|+.+||.|+++|+..++..++||.+.+.
T Consensus 2 i~iY~~~~------C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~ 47 (115)
T cd03032 2 IKLYTSPS------CSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILS 47 (115)
T ss_pred EEEEeCCC------CHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence 67998654 56999999999999999999999988878888888876
No 54
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.84 E-value=0.0021 Score=56.16 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=40.6
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHc
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLG 269 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg 269 (366)
|+||+...| ..|.+|+++|+.+||.|+++|+..++-..+||++.+.
T Consensus 2 i~iY~~~~C------~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~ 47 (131)
T PRK12559 2 VVLYTTASC------ASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILR 47 (131)
T ss_pred EEEEeCCCC------hHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHH
Confidence 789997654 5999999999999999999999988888888888775
No 55
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.82 E-value=0.0023 Score=55.95 Aligned_cols=46 Identities=17% Similarity=0.334 Sum_probs=39.9
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHc
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLG 269 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg 269 (366)
|+||+.+.| ..|.+|+++|+++||.|+++|+..++-.++||.+.+.
T Consensus 2 i~iY~~~~C------~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~ 47 (132)
T PRK13344 2 IKIYTISSC------TSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILT 47 (132)
T ss_pred EEEEeCCCC------HHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHH
Confidence 789987654 5999999999999999999999988877888887765
No 56
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=96.81 E-value=0.011 Score=44.92 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=47.4
Q ss_pred CCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHHh
Q 017790 227 GIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNE 298 (366)
Q Consensus 227 gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~E 298 (366)
++...+++|.+++.+|+.+|++|+.++++... + ....++|.+.++|+.+.+...+.+..+
T Consensus 11 ~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~---------~---~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 11 GLPSLSPECLKVETYLRMAGIPYEVVFSSNPW---------R---SPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCCCCHHHHHHHHHHHhCCCceEEEecCCcc---------c---CCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 33445678999999999999999999987532 2 235689999999999999988877554
No 57
>PHA02125 thioredoxin-like protein
Probab=96.67 E-value=0.0078 Score=46.78 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=37.9
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHI 287 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~I 287 (366)
|++|+++||+ +|.+++.+|++. .+...+|+.+. ..++.+.++ ...+|.+. +|+.+
T Consensus 2 iv~f~a~wC~------~Ck~~~~~l~~~--~~~~~~vd~~~--~~~l~~~~~----v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWCA------NCKMVKPMLANV--EYTYVDVDTDE--GVELTAKHH----IRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCCCH------hHHHHHHHHHHH--hheEEeeeCCC--CHHHHHHcC----CceeCeEE-CCEEE
Confidence 7899988886 999999999865 44455554433 235666565 56899876 66533
No 58
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.51 E-value=0.0046 Score=52.75 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=40.3
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHc
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLG 269 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg 269 (366)
|+||+.+. |..|.+|+++|+.+|+.|+++|+..++-.++||++.+.
T Consensus 2 i~iy~~p~------C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~ 47 (113)
T cd03033 2 IIFYEKPG------CANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFG 47 (113)
T ss_pred EEEEECCC------CHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHH
Confidence 78999764 45899999999999999999999888877888888876
No 59
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=96.37 E-value=0.021 Score=43.90 Aligned_cols=69 Identities=12% Similarity=0.199 Sum_probs=50.5
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHH
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLN 297 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~ 297 (366)
+++|....++ .|.+++.+|...|++|+.+.++.+ ...+++++ .....++|.+..+|..|.....+.+..
T Consensus 2 ~~Ly~~~~~~------~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~----~~p~~~vP~l~~~~~~l~es~aI~~yL 70 (73)
T cd03076 2 YTLTYFPVRG------RAEAIRLLLADQGISWEEERVTYE-EWQESLKP----KMLFGQLPCFKDGDLTLVQSNAILRHL 70 (73)
T ss_pred cEEEEeCCcc------hHHHHHHHHHHcCCCCEEEEecHH-Hhhhhhhc----cCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 5678765554 788999999999999999988752 22333332 334578999999998888877776654
No 60
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=96.26 E-value=0.015 Score=57.77 Aligned_cols=84 Identities=21% Similarity=0.404 Sum_probs=62.8
Q ss_pred CcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHH
Q 017790 216 NKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQ 295 (366)
Q Consensus 216 ~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~ 295 (366)
=++|+|-- +||++|++||++|+=+|+.|..+.|+ +-.|+|++= ..-..||.+.|+|+-+-...-+..
T Consensus 89 L~l~LyQy------etCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk~-----SsykKVPil~~~Geqm~dSsvIIs 155 (370)
T KOG3029|consen 89 LDLVLYQY------ETCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIKW-----SSYKKVPILLIRGEQMVDSSVIIS 155 (370)
T ss_pred ceEEEEee------ccCchHHHHHHHHhhcCCceEEEEec--chhhhhccc-----cccccccEEEeccceechhHHHHH
Confidence 36899974 67889999999999999999998884 555666642 224689999999987777666655
Q ss_pred HH-----h-cCcHHHHhcCCCCc
Q 017790 296 LN-----E-TGDLAMLLKGFPVV 312 (366)
Q Consensus 296 L~-----E-sGeL~kLL~~~~~~ 312 (366)
+. + .-.|.++++-.|+.
T Consensus 156 ~laTyLq~~~q~l~eiiq~yPa~ 178 (370)
T KOG3029|consen 156 LLATYLQDKRQDLGEIIQMYPAT 178 (370)
T ss_pred HHHHHhccCCCCHHHHHHhcccc
Confidence 44 2 23578888777753
No 61
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=96.17 E-value=0.021 Score=42.70 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=43.7
Q ss_pred chHHHHHHHHHhCCCcEEEEEccCCH--HHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHH
Q 017790 233 EDCCSVRMIFKSYRVGVDERDISMDS--SYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQL 296 (366)
Q Consensus 233 ~dC~raK~IL~~~gV~ydErDVsmD~--e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L 296 (366)
..|.+++.+|+.+|++|+.+.+++.. ....++++.. ...++|.+..+|..+.....+.+.
T Consensus 10 ~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~----p~~~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 10 SASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALN----PQGLVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred cchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhC----CCCCCCEEEECCEEEEcHHHHHHH
Confidence 46779999999999999998887532 1234555432 357899999998888776666554
No 62
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.12 E-value=0.017 Score=46.95 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=41.8
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEc
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSY-----RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIG 288 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~-----gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IG 288 (366)
.|.+|++.+|+ +|..++.+|+.+ ++.+..+|++..+ ++.+.++ ...+|.++|||+.++
T Consensus 15 ~i~~F~~~~C~------~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~----e~a~~~~----V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCH------NCPDVVQALNLMAVLNPNIEHEMIDGALFQ----DEVEERG----IMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCC------CcHHHHHHHHHHHHHCCCceEEEEEhHhCH----HHHHHcC----CccCCEEEECCEEEE
Confidence 58899987764 788766666543 6889999987543 3444444 568999999997765
No 63
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.09 E-value=0.0054 Score=52.88 Aligned_cols=51 Identities=29% Similarity=0.742 Sum_probs=40.1
Q ss_pred cccccccCCccceeeCCCCCCCceeeecCCC---ccccCCccccCccccCCCCC
Q 017790 314 AVSVCESCGDARFVPCSHCCGSRKVFDEEDG---QLRRCTNCNENGLIRCPACS 364 (366)
Q Consensus 314 ~~~~C~~CGg~rfvpC~~C~GS~Kv~~e~~~---~~~rC~~CNENGLirCp~C~ 364 (366)
....|..|.|.+...|..|+|+-.+...... ...+|+.|+-.|.+.|+.|.
T Consensus 40 ~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~~C~~C~ 93 (111)
T PLN03165 40 NTQPCFPCSGTGAQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLTCTTCQ 93 (111)
T ss_pred cCCCCCCCCCCCCcCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcceeeCCCCC
Confidence 3457999999999999999999765432211 25699999999999999984
No 64
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=95.96 E-value=0.032 Score=42.23 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=47.9
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHH
Q 017790 219 VIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQL 296 (366)
Q Consensus 219 VVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L 296 (366)
+||....+ ..|.+++.+|+.+|++|+.+.++.......+ +.......++|.+..+|..|.....+.+.
T Consensus 2 ~Ly~~~~~------~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~----~~~~~p~~~vP~L~~~~~~l~es~aI~~y 69 (72)
T cd03039 2 KLTYFNIR------GRGEPIRLLLADAGVEYEDVRITYEEWPELD----LKPTLPFGQLPVLEIDGKKLTQSNAILRY 69 (72)
T ss_pred EEEEEcCc------chHHHHHHHHHHCCCCcEEEEeCHHHhhhhh----hccCCcCCCCCEEEECCEEEEecHHHHHH
Confidence 57765544 4789999999999999999988643211111 22234567999999888888777666554
No 65
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=95.96 E-value=0.046 Score=41.51 Aligned_cols=71 Identities=8% Similarity=0.017 Sum_probs=50.7
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCH--HHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHH
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDS--SYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQ 295 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~--e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~ 295 (366)
+.+|+... +..|.+++.+|..+|++|+.+.+++.. ...+++.+. ....++|.+..+|..|.....+.+
T Consensus 2 ~~Ly~~~~------s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~----~P~~~vP~l~~~g~~l~es~aI~~ 71 (76)
T cd03053 2 LKLYGAAM------STCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLAR----NPFGQIPALEDGDLKLFESRAITR 71 (76)
T ss_pred eEEEeCCC------ChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhh----CCCCCCCEEEECCEEEEcHHHHHH
Confidence 56787543 358899999999999999998887532 112344443 235789999988888887777776
Q ss_pred HHh
Q 017790 296 LNE 298 (366)
Q Consensus 296 L~E 298 (366)
..+
T Consensus 72 yL~ 74 (76)
T cd03053 72 YLA 74 (76)
T ss_pred HHh
Confidence 543
No 66
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=95.83 E-value=0.052 Score=41.30 Aligned_cols=70 Identities=13% Similarity=0.017 Sum_probs=47.9
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHHh
Q 017790 219 VIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNE 298 (366)
Q Consensus 219 VVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~E 298 (366)
.+|+... ..+|.+++.+|+.+|++|+.++++... ...++++ +.. ...++|.+..+|.-+.....+.+..+
T Consensus 2 ~Ly~~~~------sp~~~~v~~~l~~~gl~~~~~~~~~~~-~~~~~~~-~~p--~~~~vP~l~~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 2 KLLGAWA------SPFVLRVRIALALKGVPYEYVEEDLGN-KSELLLA-SNP--VHKKIPVLLHNGKPICESLIIVEYID 71 (74)
T ss_pred EEEECCC------CchHHHHHHHHHHcCCCCEEEEeCccc-CCHHHHH-hCC--CCCCCCEEEECCEEeehHHHHHHHHH
Confidence 5776543 458999999999999999998876531 1233333 221 12689999888887777777766443
No 67
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.77 E-value=0.041 Score=43.09 Aligned_cols=54 Identities=17% Similarity=0.312 Sum_probs=39.5
Q ss_pred EEEEEeCCCCCCCCCchHHHH----HHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSV----RMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHI 287 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~ra----K~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~I 287 (366)
|.+|+ +||+ .|..+ +.+++.+++.++..+|+ + .+++.+ + +...+|.|+|||+.+
T Consensus 3 i~~~a-~~C~------~C~~~~~~~~~~~~e~~~~~~~~~v~-~---~~~a~~-~----~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGCA------NCQMTEKNVKKAVEELGIDAEFEKVT-D---MNEILE-A----GVTATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CCCc------CHHHHHHHHHHHHHHcCCCeEEEEeC-C---HHHHHH-c----CCCcCCEEEECCEEE
Confidence 56665 7775 99976 77888899999999987 2 223322 2 367999999999665
No 68
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=95.77 E-value=0.042 Score=42.59 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=49.0
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHH--HHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHH
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSS--YRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQ 295 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e--~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~ 295 (366)
+++|.... ++.|.+++.+|+.+|++|+.+.++.... ...++.+.- ...+||.+..||..|.....+.+
T Consensus 1 ~~ly~~~~------s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~in----P~g~vP~L~~~g~~l~Es~aI~~ 70 (73)
T cd03052 1 LVLYHWTQ------SFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLN----PTGEVPVLIHGDNIICDPTQIID 70 (73)
T ss_pred CEEecCCC------CccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhC----cCCCCCEEEECCEEEEcHHHHHH
Confidence 35777543 4578899999999999999988865332 223455433 35789999988888877776655
Q ss_pred H
Q 017790 296 L 296 (366)
Q Consensus 296 L 296 (366)
.
T Consensus 71 y 71 (73)
T cd03052 71 Y 71 (73)
T ss_pred H
Confidence 4
No 69
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.73 E-value=0.019 Score=49.59 Aligned_cols=47 Identities=19% Similarity=0.194 Sum_probs=40.6
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHc
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLG 269 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg 269 (366)
-|.||...-| .-|.+|+++|+++||.|.++|+..++-.+++|++.+.
T Consensus 2 ~itiy~~p~C------~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~ 48 (117)
T COG1393 2 MITIYGNPNC------STCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILS 48 (117)
T ss_pred eEEEEeCCCC------hHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHH
Confidence 3889987655 4899999999999999999999988878888888875
No 70
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=95.57 E-value=0.11 Score=43.10 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=53.6
Q ss_pred EEEEEeCCCCC--CCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHH
Q 017790 218 IVIYFTSLRGI--RRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQ 295 (366)
Q Consensus 218 VVVYTTSL~gI--RKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~ 295 (366)
+-+|.+...+. ...+++|.+++.+|..+||+|+..+|++...- +.+.++.- ...+|.+..+|..|...+.+.+
T Consensus 6 ~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p-~~~~~~nP----~g~vPvL~~~~~~i~eS~~I~e 80 (91)
T cd03061 6 IELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKP-EDLKDLAP----GTQPPFLLYNGEVKTDNNKIEE 80 (91)
T ss_pred EEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCCC-HHHHHhCC----CCCCCEEEECCEEecCHHHHHH
Confidence 44555443321 24567899999999999999999988765421 23433322 4689999989999988888877
Q ss_pred HHh
Q 017790 296 LNE 298 (366)
Q Consensus 296 L~E 298 (366)
+.+
T Consensus 81 YLd 83 (91)
T cd03061 81 FLE 83 (91)
T ss_pred HHH
Confidence 655
No 71
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=95.40 E-value=0.063 Score=45.00 Aligned_cols=52 Identities=13% Similarity=0.284 Sum_probs=36.9
Q ss_pred cEEEEE-eCCCCCCCCCchHHHHHHHHHhCC-----CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe
Q 017790 217 KIVIYF-TSLRGIRRTYEDCCSVRMIFKSYR-----VGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 217 kVVVYT-TSL~gIRKT~~dC~raK~IL~~~g-----V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV 282 (366)
.||||+ ++||+ +|..++.+|+.+. +.+..+|++.++ ++.+.++ ..++|.+++
T Consensus 24 ~vvv~f~a~wC~------~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~~----v~~vPt~~i 81 (113)
T cd02975 24 DLVVFSSKEGCQ------YCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKYG----VERVPTTIF 81 (113)
T ss_pred EEEEEeCCCCCC------ChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHcC----CCcCCEEEE
Confidence 466664 45664 9999888887543 567888887543 5555554 678999988
No 72
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.37 E-value=0.029 Score=47.35 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=38.5
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHc
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLG 269 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg 269 (366)
|+||+.+.| .-|.+|+++|+.+|++|+++|+..++-..+||.+.+.
T Consensus 1 i~iy~~~~C------~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~ 46 (112)
T cd03034 1 ITIYHNPRC------SKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLA 46 (112)
T ss_pred CEEEECCCC------HHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHH
Confidence 578987644 5899999999999999999999887767778877765
No 73
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=95.23 E-value=0.2 Score=38.44 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=49.9
Q ss_pred EEEEEeCCC-CCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHH
Q 017790 218 IVIYFTSLR-GIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQL 296 (366)
Q Consensus 218 VVVYTTSL~-gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L 296 (366)
++||....+ ++..-..+|.+|+.+|+..|++|+.+.++.- ......++|.+..+|+.|.+...+.+.
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~------------~~~p~g~vPvl~~~g~~l~eS~~I~~y 69 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA------------KRSPKGKLPFIELNGEKIADSELIIDH 69 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc------------cCCCCCCCCEEEECCEEEcCHHHHHHH
Confidence 456654432 2223356799999999999999998887531 123467899999999999998887765
Q ss_pred Hh
Q 017790 297 NE 298 (366)
Q Consensus 297 ~E 298 (366)
.+
T Consensus 70 L~ 71 (75)
T cd03080 70 LE 71 (75)
T ss_pred HH
Confidence 44
No 74
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=95.18 E-value=0.11 Score=40.08 Aligned_cols=69 Identities=10% Similarity=0.147 Sum_probs=48.4
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCH--HHHHHHHHHHcCCCCCCcccEEEeC---CEEEccchH
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDS--SYRKELQDLLGVEGKAITLPQVFIR---GKHIGGAEE 292 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~--e~reEL~elLg~~tg~~TVPqVFVd---G~~IGGaDE 292 (366)
+.||... . ..|.+++.+|+.+|++|+.+.++... ...+++.+.. ...++|.+..+ |..|.....
T Consensus 2 ~~Ly~~~------~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~----p~~~vP~l~~~~~~g~~l~eS~a 70 (81)
T cd03048 2 ITLYTHG------T-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKIN----PNGRIPAIVDHNGTPLTVFESGA 70 (81)
T ss_pred eEEEeCC------C-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhC----cCCCCCEEEeCCCCceEEEcHHH
Confidence 5688643 2 68999999999999999888776432 2334555432 25689999887 777777666
Q ss_pred HHHHH
Q 017790 293 IKQLN 297 (366)
Q Consensus 293 v~~L~ 297 (366)
+.+..
T Consensus 71 I~~yL 75 (81)
T cd03048 71 ILLYL 75 (81)
T ss_pred HHHHH
Confidence 65543
No 75
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.18 E-value=0.078 Score=40.12 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=45.9
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHh--CCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe-CCEEEccchHHHH
Q 017790 219 VIYFTSLRGIRRTYEDCCSVRMIFKS--YRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI-RGKHIGGAEEIKQ 295 (366)
Q Consensus 219 VVYTTSL~gIRKT~~dC~raK~IL~~--~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV-dG~~IGGaDEv~~ 295 (366)
.+|+...+ .+|.+++.+|.. +|++|+.+.++... ...++.+.. ...++|.+.. +|..+.....+.+
T Consensus 2 ~Ly~~~~s------~~~~~~~~~l~~~~~~i~~~~~~~~~~~-~~~~~~~~~----p~~~vP~l~~~~g~~l~es~aI~~ 70 (73)
T cd03049 2 KLLYSPTS------PYVRKVRVAAHETGLGDDVELVLVNPWS-DDESLLAVN----PLGKIPALVLDDGEALFDSRVICE 70 (73)
T ss_pred EEecCCCC------cHHHHHHHHHHHhCCCCCcEEEEcCccc-CChHHHHhC----CCCCCCEEEECCCCEEECHHHHHh
Confidence 46765443 589999999999 89999998886432 224444432 2568999875 6777766666654
Q ss_pred H
Q 017790 296 L 296 (366)
Q Consensus 296 L 296 (366)
.
T Consensus 71 y 71 (73)
T cd03049 71 Y 71 (73)
T ss_pred h
Confidence 3
No 76
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.10 E-value=0.15 Score=39.81 Aligned_cols=51 Identities=24% Similarity=0.446 Sum_probs=34.7
Q ss_pred CCchHHH----HHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEE--Eccc
Q 017790 231 TYEDCCS----VRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKH--IGGA 290 (366)
Q Consensus 231 T~~dC~r----aK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~--IGGa 290 (366)
+|+.|.+ ++.++..+++.++..|+. + .+++ +.++ ...+|.++|||+. .|..
T Consensus 9 ~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-~---~~~~-~~yg----v~~vPalvIng~~~~~G~~ 65 (76)
T PF13192_consen 9 GCPYCPELVQLLKEAAEELGIEVEIIDIE-D---FEEI-EKYG----VMSVPALVINGKVVFVGRV 65 (76)
T ss_dssp SCTTHHHHHHHHHHHHHHTTEEEEEEETT-T---HHHH-HHTT-----SSSSEEEETTEEEEESS-
T ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEEEcc-C---HHHH-HHcC----CCCCCEEEECCEEEEEecC
Confidence 4568885 445777889999999983 3 3455 4444 6799999999974 4534
No 77
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.10 E-value=0.039 Score=46.78 Aligned_cols=46 Identities=9% Similarity=0.210 Sum_probs=39.3
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHc
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLG 269 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg 269 (366)
|.||+.+ +|.-|.+|+++|+++|+.|+++|+..++-..+||.+.+.
T Consensus 1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~ 46 (114)
T TIGR00014 1 VTIYHNP------RCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFA 46 (114)
T ss_pred CEEEECC------CCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHH
Confidence 5689865 445899999999999999999999888877788888876
No 78
>PRK10387 glutaredoxin 2; Provisional
Probab=95.03 E-value=0.11 Score=46.67 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=50.4
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEE-EeCCEEEccchHHHHH
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQV-FIRGKHIGGAEEIKQL 296 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqV-FVdG~~IGGaDEv~~L 296 (366)
+.||+...+ ++|.+|+.+|+.+||+|+.++++.... ... .+. .+..+||.+ .-+|..|.....+.+.
T Consensus 1 ~~Ly~~~~s------p~~~kv~~~L~~~gi~y~~~~~~~~~~-~~~-~~~----~p~~~VPvL~~~~g~~l~eS~aI~~y 68 (210)
T PRK10387 1 MKLYIYDHC------PFCVKARMIFGLKNIPVELIVLANDDE-ATP-IRM----IGQKQVPILQKDDGSYMPESLDIVHY 68 (210)
T ss_pred CEEEeCCCC------chHHHHHHHHHHcCCCeEEEEcCCCch-hhH-HHh----cCCcccceEEecCCeEecCHHHHHHH
Confidence 357875544 589999999999999999999865432 122 222 224689999 5688899988888775
Q ss_pred Hhc
Q 017790 297 NET 299 (366)
Q Consensus 297 ~Es 299 (366)
.++
T Consensus 69 L~~ 71 (210)
T PRK10387 69 IDE 71 (210)
T ss_pred HHH
Confidence 553
No 79
>PRK10026 arsenate reductase; Provisional
Probab=95.03 E-value=0.043 Score=48.97 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=40.8
Q ss_pred CcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHc
Q 017790 216 NKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLG 269 (366)
Q Consensus 216 ~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg 269 (366)
..|.||+.+-| .-|.+|+++|+.+|+.|+++|+-.++-..+||++.+.
T Consensus 2 ~~i~iY~~p~C------st~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~ 49 (141)
T PRK10026 2 SNITIYHNPAC------GTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIA 49 (141)
T ss_pred CEEEEEeCCCC------HHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHH
Confidence 35889987644 4899999999999999999999888777888888776
No 80
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=94.97 E-value=0.044 Score=47.77 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=38.4
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHc
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLG 269 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg 269 (366)
.|+||...- |.-|.+|+++|+.+||+|+++|+-.++-.++||++.+.
T Consensus 2 ~i~iY~~p~------Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~ 48 (126)
T TIGR01616 2 TIIFYEKPG------CANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFG 48 (126)
T ss_pred eEEEEeCCC------CHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHH
Confidence 378998653 45799999999999999999999877766777777665
No 81
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=94.95 E-value=0.09 Score=41.12 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=48.1
Q ss_pred CCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeC-CEEEccchHHHHHHh
Q 017790 228 IRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIR-GKHIGGAEEIKQLNE 298 (366)
Q Consensus 228 IRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVd-G~~IGGaDEv~~L~E 298 (366)
.+....+|.+++.+|..+|++|+.+.+++... +.....++ .....++|.+..+ |..|.+...+.+..+
T Consensus 12 ~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~--~~~~~~~~-~~p~~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 12 VRAFSPNVWKTRLALNHKGLEYKTVPVEFPDI--PPILGELT-SGGFYTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CCCcCChhHHHHHHHHhCCCCCeEEEecCCCc--cccccccc-CCCCceeCeEEECCCCEEeCHHHHHHHHH
Confidence 34556789999999999999999988765321 12222122 3346789999888 888888888777544
No 82
>PRK10853 putative reductase; Provisional
Probab=94.94 E-value=0.043 Score=47.18 Aligned_cols=46 Identities=13% Similarity=0.149 Sum_probs=39.4
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHc
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLG 269 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg 269 (366)
|+||+..- |.-|.+|+++|+.+|+.|+++|+-.++-..+||.+.+.
T Consensus 2 i~iy~~~~------C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~ 47 (118)
T PRK10853 2 VTLYGIKN------CDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFID 47 (118)
T ss_pred EEEEcCCC------CHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHH
Confidence 67998654 45899999999999999999999888777888888876
No 83
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=94.82 E-value=0.11 Score=47.72 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=49.6
Q ss_pred EEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEE-eCCEEEccchHHHHHHh
Q 017790 220 IYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVF-IRGKHIGGAEEIKQLNE 298 (366)
Q Consensus 220 VYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVF-VdG~~IGGaDEv~~L~E 298 (366)
+|+... +++|.+|+.+|..+|++|+.+++..+.. . ...+ + ....++|.+. .||..|++...+.+..+
T Consensus 2 Ly~~~~------sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~-~~~~-~---np~g~vP~l~~~~g~~l~es~~I~~yL~ 69 (209)
T TIGR02182 2 LYIYDH------CPFCVRARMIFGLKNIPVEKHVLLNDDE-E-TPIR-M---IGAKQVPILQKDDGRAMPESLDIVAYFD 69 (209)
T ss_pred eecCCC------CChHHHHHHHHHHcCCCeEEEECCCCcc-h-hHHH-h---cCCCCcceEEeeCCeEeccHHHHHHHHH
Confidence 576544 4699999999999999999988865432 1 2222 2 2356899997 78899999988888555
Q ss_pred c
Q 017790 299 T 299 (366)
Q Consensus 299 s 299 (366)
+
T Consensus 70 ~ 70 (209)
T TIGR02182 70 K 70 (209)
T ss_pred H
Confidence 3
No 84
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=94.55 E-value=0.33 Score=41.56 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=36.8
Q ss_pred CCCCchHHHH----HHHHHhCCCcEEEEEccCCH----H---HHHHHHHHHcCCCCCCcccEEE--eCCEEEccc
Q 017790 229 RRTYEDCCSV----RMIFKSYRVGVDERDISMDS----S---YRKELQDLLGVEGKAITLPQVF--IRGKHIGGA 290 (366)
Q Consensus 229 RKT~~dC~ra----K~IL~~~gV~ydErDVsmD~----e---~reEL~elLg~~tg~~TVPqVF--VdG~~IGGa 290 (366)
|.+|++|..+ +.+.+..++.+.++|++.+. . ...++++.++...+...+|.++ -+|+.++..
T Consensus 32 ~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~~~ 106 (122)
T TIGR01295 32 RKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQVSVR 106 (122)
T ss_pred CCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEEEEE
Confidence 4556699974 45556667889999998653 1 1123444443212344588874 588665443
No 85
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=94.09 E-value=0.23 Score=37.41 Aligned_cols=61 Identities=5% Similarity=-0.046 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhCCCcEEEEEccCCH--HHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHHh
Q 017790 234 DCCSVRMIFKSYRVGVDERDISMDS--SYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNE 298 (366)
Q Consensus 234 dC~raK~IL~~~gV~ydErDVsmD~--e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~E 298 (366)
.+.+++.+|...|++|+.+.++... ....++.+. ....++|.+..+|..|.....+.+..+
T Consensus 10 ~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~----~p~~~vP~l~~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 10 RSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAI----NPLGKVPVLVDGDLVLTESAAIILYLA 72 (76)
T ss_pred ChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhc----CCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 5779999999999999988876531 123444442 235789999999988888877776543
No 86
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=94.00 E-value=0.29 Score=37.30 Aligned_cols=68 Identities=12% Similarity=0.213 Sum_probs=46.5
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCH-H-HHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHH
Q 017790 219 VIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDS-S-YRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQL 296 (366)
Q Consensus 219 VVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~-e-~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L 296 (366)
.+|.... ...|.+++.+|...|++|+.+.++... + ..+++.+.. ...++|.+..+|..|-....+.+.
T Consensus 2 ~ly~~~~------s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~----p~~~vP~L~~~~~~l~eS~aI~~Y 71 (76)
T cd03050 2 KLYYDLM------SQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKIN----PFGKVPAIVDGDFTLAESVAILRY 71 (76)
T ss_pred EEeeCCC------ChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhC----cCCCCCEEEECCEEEEcHHHHHHH
Confidence 5776543 457889999999999999988886432 1 223444432 257899998888776666655544
No 87
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=93.89 E-value=0.14 Score=41.18 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=35.2
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHH----------HhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIF----------KSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL----------~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV 282 (366)
+|.|+++||+ +|.+....+ .+ ++.+..+|++.+.....++.+.++ ...+|.+++
T Consensus 15 lv~f~a~wC~------~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~----i~~~Pti~~ 78 (104)
T cd02953 15 FVDFTADWCV------TCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFG----VFGPPTYLF 78 (104)
T ss_pred EEEEEcchhH------HHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcC----CCCCCEEEE
Confidence 5566666664 898765332 22 577778888766544566766665 568998865
No 88
>PHA02278 thioredoxin-like protein
Probab=93.86 E-value=0.23 Score=41.56 Aligned_cols=60 Identities=13% Similarity=0.332 Sum_probs=38.3
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhC------CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEE--EeCCEEE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSY------RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQV--FIRGKHI 287 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~------gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqV--FVdG~~I 287 (366)
||-|+++||| +|..+.-+|+.. .+.+..+||+.+.....++.+.++ ...+|.+ |-+|+.+
T Consensus 18 vV~F~A~WCg------pCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~----I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCG------KCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD----IMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCH------HHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC----CccccEEEEEECCEEE
Confidence 5556677776 999766555432 356888898865323456777665 4567766 4488654
No 89
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=93.57 E-value=0.28 Score=32.75 Aligned_cols=56 Identities=20% Similarity=0.390 Sum_probs=38.6
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHH-----hCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCC
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFK-----SYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRG 284 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~-----~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG 284 (366)
|++|..++| ..|.+++..|+ ..++.+..+|++...+..+.+ ... +...+|.+++.+
T Consensus 1 l~~~~~~~c------~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWC------PFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKEL-KRY----GVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCC------hhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHH-HhC----CCccccEEEEEe
Confidence 456665554 59999999998 567889999988665433221 122 257899998765
No 90
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.31 Score=40.03 Aligned_cols=69 Identities=16% Similarity=0.270 Sum_probs=44.6
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHH-HHHHHHH-----HHc--CCCCCCcccEEEeCC-EEEcc
Q 017790 219 VIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSS-YRKELQD-----LLG--VEGKAITLPQVFIRG-KHIGG 289 (366)
Q Consensus 219 VVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e-~reEL~e-----lLg--~~tg~~TVPqVFVdG-~~IGG 289 (366)
++|.+.+|+ +|..+.+.|++.+|.|++++|...-. +++-|+= .+. ...|-..+|.+.++. +-|=|
T Consensus 5 ~lfgsn~Cp------dca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 5 KLFGSNLCP------DCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred eeeccccCc------chHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 788877765 99999999999999999999964322 2222210 010 023567899998754 44433
Q ss_pred chHHH
Q 017790 290 AEEIK 294 (366)
Q Consensus 290 aDEv~ 294 (366)
+++.
T Consensus 79 -~Dl~ 82 (85)
T COG4545 79 -DDLS 82 (85)
T ss_pred -chhh
Confidence 5543
No 91
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=93.29 E-value=0.36 Score=36.81 Aligned_cols=60 Identities=7% Similarity=0.112 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhCCCcEEEEEccCCH--HHHHHHHHHHcCCCCCCcccEEEeC-CEEEccchHHHHHH
Q 017790 234 DCCSVRMIFKSYRVGVDERDISMDS--SYRKELQDLLGVEGKAITLPQVFIR-GKHIGGAEEIKQLN 297 (366)
Q Consensus 234 dC~raK~IL~~~gV~ydErDVsmD~--e~reEL~elLg~~tg~~TVPqVFVd-G~~IGGaDEv~~L~ 297 (366)
.+.+++.+|..+|++|+.++++... ...+++.+.. ...++|.+..+ |..+.....+.+..
T Consensus 10 ~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~n----p~~~vP~l~~~~g~~l~eS~aI~~yL 72 (77)
T cd03057 10 CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAIN----PKGQVPALVLDDGEVLTESAAILQYL 72 (77)
T ss_pred chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhC----CCCCCCEEEECCCcEEEcHHHHHHHH
Confidence 4678999999999999988876533 1234555433 35789998887 77666666665543
No 92
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=93.29 E-value=0.57 Score=34.80 Aligned_cols=54 Identities=17% Similarity=0.402 Sum_probs=37.1
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHh-----CCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe--CCE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKS-----YRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI--RGK 285 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~-----~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV--dG~ 285 (366)
+|+|++++| ..|..++.+|+. .++.+..+|++.+.+ +.+.++ ...+|.+++ +|+
T Consensus 14 ll~~~~~~C------~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~----v~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWC------GPCKAIAPVLEELAEEYPKVKFVKVDVDENPE----LAEEYG----VRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCC------hhHHHhhHHHHHHHHHCCCceEEEEECCCChh----HHHhcC----cccccEEEEEECCE
Confidence 555655544 589988888876 778888889876543 344444 457899776 776
No 93
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=92.94 E-value=0.41 Score=36.79 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=46.1
Q ss_pred CCCCchHHHHHHHHHhCCCcEEEEEccCCHH-HHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHH
Q 017790 229 RRTYEDCCSVRMIFKSYRVGVDERDISMDSS-YRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQL 296 (366)
Q Consensus 229 RKT~~dC~raK~IL~~~gV~ydErDVsmD~e-~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L 296 (366)
+....++.+++-+|+.+|++|+.+.++.... ...++++. ....++|.+..+|..|.....+.++
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~----nP~g~vP~L~~~g~~l~eS~aI~~Y 71 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEF----SPTGKVPVLVDGGIVVWDSLAICEY 71 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhh----CCCCcCCEEEECCEEEEcHHHHHHH
Confidence 4456678899999999999999988875431 22344432 2357899999998887777666553
No 94
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=92.79 E-value=0.49 Score=36.21 Aligned_cols=60 Identities=12% Similarity=0.003 Sum_probs=42.0
Q ss_pred chHHHHHHHHHhCCCcEEEEEccCCHHH-HHHHHHHHcCCCCCCcccEEEeC-CEEEccchHHHHH
Q 017790 233 EDCCSVRMIFKSYRVGVDERDISMDSSY-RKELQDLLGVEGKAITLPQVFIR-GKHIGGAEEIKQL 296 (366)
Q Consensus 233 ~dC~raK~IL~~~gV~ydErDVsmD~e~-reEL~elLg~~tg~~TVPqVFVd-G~~IGGaDEv~~L 296 (366)
..|.+++-+|+.+|++|+.++|+...+. .+++.+.. ...++|.+..+ |..|.....+.+.
T Consensus 10 ~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~n----P~~~vP~L~~~~g~~l~es~aI~~y 71 (75)
T cd03044 10 PRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKF----PLGKVPAFEGADGFCLFESNAIAYY 71 (75)
T ss_pred ccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhC----CCCCCCEEEcCCCCEEeeHHHHHHH
Confidence 4788999999999999999988764322 23444432 35789999885 7666655555443
No 95
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=92.55 E-value=0.55 Score=42.71 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=50.9
Q ss_pred CCCcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHH
Q 017790 214 SNNKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEI 293 (366)
Q Consensus 214 ~~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv 293 (366)
+...+.||+... +..|.+++-+|+.+|++|+.+.|+... ..+++.++. ...+||.+..+|..|--...+
T Consensus 7 ~~~~~~Ly~~~~------s~~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~~~~n----P~g~VPvL~~~g~~l~ES~AI 75 (211)
T PRK09481 7 KRSVMTLFSGPT------DIYSHQVRIVLAEKGVSVEIEQVEKDN-LPQDLIDLN----PYQSVPTLVDRELTLYESRII 75 (211)
T ss_pred CCCeeEEeCCCC------ChhHHHHHHHHHHCCCCCEEEeCCccc-CCHHHHHhC----CCCCCCEEEECCEEeeCHHHH
Confidence 444578997543 358899999999999999999887532 224555533 246899999888777666666
Q ss_pred HH
Q 017790 294 KQ 295 (366)
Q Consensus 294 ~~ 295 (366)
.+
T Consensus 76 l~ 77 (211)
T PRK09481 76 ME 77 (211)
T ss_pred HH
Confidence 55
No 96
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=92.20 E-value=0.38 Score=44.47 Aligned_cols=61 Identities=13% Similarity=0.356 Sum_probs=41.3
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCC--E-EEc
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSY-----RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRG--K-HIG 288 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~-----gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG--~-~IG 288 (366)
.|++|+++||+ +|..++.+|+.+ .|.+..+|++.++ ++.+.++ ...+|.++|++ + ++|
T Consensus 136 ~I~~F~a~~C~------~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~----~~~~~~~----V~~vPtl~i~~~~~~~~G 201 (215)
T TIGR02187 136 RIEVFVTPTCP------YCPYAVLMAHKFALANDKILGEMIEANENP----DLAEKYG----VMSVPKIVINKGVEEFVG 201 (215)
T ss_pred EEEEEECCCCC------CcHHHHHHHHHHHHhcCceEEEEEeCCCCH----HHHHHhC----CccCCEEEEecCCEEEEC
Confidence 46678888875 899888888764 3556677776553 4555554 56899999865 3 555
Q ss_pred cch
Q 017790 289 GAE 291 (366)
Q Consensus 289 GaD 291 (366)
...
T Consensus 202 ~~~ 204 (215)
T TIGR02187 202 AYP 204 (215)
T ss_pred CCC
Confidence 443
No 97
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=92.15 E-value=0.85 Score=34.54 Aligned_cols=67 Identities=9% Similarity=-0.028 Sum_probs=45.4
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCH--HHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHH
Q 017790 219 VIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDS--SYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQ 295 (366)
Q Consensus 219 VVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~--e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~ 295 (366)
.+|.... .+.+.+++.+|+.+|++|+.++++... ...+++.+. ....++|.+..+|..|.....+.+
T Consensus 2 ~l~~~~~------s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~----nP~~~vP~L~~~~~~l~eS~aI~~ 70 (73)
T cd03047 2 TIWGRRS------SINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAM----NPNGRVPVLEDGDFVLWESNAILR 70 (73)
T ss_pred EEEecCC------CcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhh----CCCCCCCEEEECCEEEECHHHHHH
Confidence 4675443 347789999999999999988876432 123444442 235689999888877766655544
No 98
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=91.84 E-value=0.33 Score=40.48 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=29.1
Q ss_pred CCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHc
Q 017790 230 RTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLG 269 (366)
Q Consensus 230 KT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg 269 (366)
++|.-|.+|+++|+.+|+.|+++|+..++-.++||.+.+.
T Consensus 4 ~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~ 43 (110)
T PF03960_consen 4 PNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLS 43 (110)
T ss_dssp TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHH
Confidence 3556799999999999999999999987767777777765
No 99
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=91.75 E-value=1.1 Score=34.94 Aligned_cols=69 Identities=20% Similarity=0.188 Sum_probs=45.4
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHH
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQ 295 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~ 295 (366)
+.+|....++ .|.+++.+|+..|++|+.+.++..+++. ++.... .....++|.+.+||..|....-+..
T Consensus 2 ~~Ly~~~~~~------~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~~--~~~~g~vP~L~~~g~~l~ES~AI~~ 70 (79)
T cd03077 2 PVLHYFNGRG------RMESIRWLLAAAGVEFEEKFIESAEDLE-KLKKDG--SLMFQQVPMVEIDGMKLVQTRAILN 70 (79)
T ss_pred CEEEEeCCCC------hHHHHHHHHHHcCCCcEEEEeccHHHHH-hhcccc--CCCCCCCCEEEECCEEEeeHHHHHH
Confidence 4677766543 6779999999999999988876533221 121110 0114589999889877766655554
No 100
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.56 E-value=0.13 Score=52.57 Aligned_cols=63 Identities=25% Similarity=0.519 Sum_probs=44.4
Q ss_pred HHHHhcCCCCc---ccccccccCCcc------ceeeCCCCCCCceeeecC----CCccccCCccccCccc---cCCCCC
Q 017790 302 LAMLLKGFPVV---NAVSVCESCGDA------RFVPCSHCCGSRKVFDEE----DGQLRRCTNCNENGLI---RCPACS 364 (366)
Q Consensus 302 L~kLL~~~~~~---~~~~~C~~CGg~------rfvpC~~C~GS~Kv~~e~----~~~~~rC~~CNENGLi---rCp~C~ 364 (366)
|+++..+..+. .....|..|.|. .-..|..|+|+-.+.... ....+.|+.||-.|-+ +|+.|.
T Consensus 126 leEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~ 204 (371)
T COG0484 126 LEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCK 204 (371)
T ss_pred hhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCC
Confidence 44555443321 135689999999 568999999998765432 2236799999999987 588884
No 101
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=90.82 E-value=0.86 Score=36.42 Aligned_cols=56 Identities=23% Similarity=0.370 Sum_probs=35.9
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHh------CCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe--CCEEE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKS------YRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI--RGKHI 287 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~------~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV--dG~~I 287 (366)
+++|.++|| ..|..++.+|+. .++.+.++|++.+. ++.+.++ ...+|.+++ +|+.+
T Consensus 17 lv~f~a~~C------~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~----~l~~~~~----v~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTC------GPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ----EIAEAAG----IMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCC------hhHHHHHHHHHHHHHHhCCceEEEEEECCCCH----HHHHHCC----CeeccEEEEEECCeEE
Confidence 445655655 489977766655 34677888887654 4445554 468898765 66554
No 102
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=90.58 E-value=1.5 Score=42.02 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=48.5
Q ss_pred CCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHHh
Q 017790 231 TYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNE 298 (366)
Q Consensus 231 T~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~E 298 (366)
.+++|.+|+.+|..+|++|+.+.|++... .+++.++-- ..+||.+..+|..|.....+.++.+
T Consensus 18 ~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP----~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 18 NCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAP----GTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred CCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCc----CCCCCEEEECCEEeecHHHHHHHHH
Confidence 45689999999999999999998876532 245554332 4689999889999988888887665
No 103
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=90.43 E-value=0.45 Score=36.38 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=45.2
Q ss_pred CchHHHHHHHHHhCCCcEEEEEccC--CH-HHHHHHHHHHcCCCCCCcccEEEe-CCEEEccchHHHHHHh
Q 017790 232 YEDCCSVRMIFKSYRVGVDERDISM--DS-SYRKELQDLLGVEGKAITLPQVFI-RGKHIGGAEEIKQLNE 298 (366)
Q Consensus 232 ~~dC~raK~IL~~~gV~ydErDVsm--D~-e~reEL~elLg~~tg~~TVPqVFV-dG~~IGGaDEv~~L~E 298 (366)
++++.+++-+|+.+|++|+..-+.. +. ...+++.++-. ..+||.+.. +|+.|.....+.++.+
T Consensus 2 sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p----~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 2 SPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNP----RGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp -HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHST----T-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred chHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCc----CeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 4578899999999999998766632 11 12245655443 568999998 8999998888877654
No 104
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=89.93 E-value=0.62 Score=40.90 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=46.5
Q ss_pred CcEEEEEeCCCCCCCCCc---h-----HHHHHHHHHhCCCcEEEEEccCCHHHH---HHHHHHHcCCCCCCcccEEEeCC
Q 017790 216 NKIVIYFTSLRGIRRTYE---D-----CCSVRMIFKSYRVGVDERDISMDSSYR---KELQDLLGVEGKAITLPQVFIRG 284 (366)
Q Consensus 216 ~kVVVYTTSL~gIRKT~~---d-----C~raK~IL~~~gV~ydErDVsmD~e~r---eEL~elLg~~tg~~TVPqVFVdG 284 (366)
.+|-||--.+|=..--+. + -..+-..|++.|+.+.-+++..++... +.+.++|. ..|...||.++|||
T Consensus 2 ~~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~-~~G~e~LPitlVdG 80 (123)
T PF06953_consen 2 KKIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQ-TEGAEALPITLVDG 80 (123)
T ss_dssp -EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHH-HH-GGG-SEEEETT
T ss_pred CceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHH-HcCcccCCEEEECC
Confidence 567788766642111111 1 224567788999999999999887422 45556665 34578999999999
Q ss_pred EEE--ccchHHHHHH
Q 017790 285 KHI--GGAEEIKQLN 297 (366)
Q Consensus 285 ~~I--GGaDEv~~L~ 297 (366)
+.+ |.|-...+|.
T Consensus 81 eiv~~G~YPt~eEl~ 95 (123)
T PF06953_consen 81 EIVKTGRYPTNEELA 95 (123)
T ss_dssp EEEEESS---HHHHH
T ss_pred EEEEecCCCCHHHHH
Confidence 876 8886665443
No 105
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=89.81 E-value=0.076 Score=49.59 Aligned_cols=87 Identities=22% Similarity=0.456 Sum_probs=61.4
Q ss_pred cccEEEeCCEEEccchHHHHHHhcCcHHHHhcCCCCccc--ccccccCCccceeeCCCCCCCceeeecCCCccccCCccc
Q 017790 276 TLPQVFIRGKHIGGAEEIKQLNETGDLAMLLKGFPVVNA--VSVCESCGDARFVPCSHCCGSRKVFDEEDGQLRRCTNCN 353 (366)
Q Consensus 276 TVPqVFVdG~~IGGaDEv~~L~EsGeL~kLL~~~~~~~~--~~~C~~CGg~rfvpC~~C~GS~Kv~~e~~~~~~rC~~CN 353 (366)
..|.-+++..++=-..|+.++. +|.|.+.|+.+-.... -..|+-|.+.+| .|..|+.+.-+|-=+.....||+.|+
T Consensus 102 ~~~~hl~~~~~~YSl~DL~~v~-~G~L~~~L~~l~~~~~~HV~~C~lC~~kGf-iCe~C~~~~~IfPF~~~~~~~C~~C~ 179 (202)
T PF13901_consen 102 QPRDHLLEDPHLYSLADLVQVK-SGQLLPQLEKLVQFAEKHVYSCELCQQKGF-ICEICNSDDIIFPFQIDTTVRCPKCK 179 (202)
T ss_pred cchhhhhhCCceEcHHHHHHHh-hchHHHHHHHHHHHHHHHHHHhHHHHhCCC-CCccCCCCCCCCCCCCCCeeeCCcCc
Confidence 4456677777777788888874 7999998877654322 248999999999 79999999555532223577999887
Q ss_pred cCc------cccCCCCC
Q 017790 354 ENG------LIRCPACS 364 (366)
Q Consensus 354 ENG------LirCp~C~ 364 (366)
--= ...||.|.
T Consensus 180 ~v~H~~C~~~~~CpkC~ 196 (202)
T PF13901_consen 180 SVFHKSCFRKKSCPKCA 196 (202)
T ss_pred cccchhhcCCCCCCCcH
Confidence 421 15577774
No 106
>PRK10767 chaperone protein DnaJ; Provisional
Probab=89.42 E-value=0.36 Score=48.69 Aligned_cols=64 Identities=22% Similarity=0.566 Sum_probs=41.9
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce------eeCCCCCCCceeeecCCC--ccccCCccccCccc---cCCCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF------VPCSHCCGSRKVFDEEDG--QLRRCTNCNENGLI---RCPACS 364 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf------vpC~~C~GS~Kv~~e~~~--~~~rC~~CNENGLi---rCp~C~ 364 (366)
.|++++.+.... .....|..|.|.+. ..|..|+|+-++....+. ....|+.|+-.|.+ +|+.|.
T Consensus 125 sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK10767 125 TLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCH 202 (371)
T ss_pred ehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCC
Confidence 466666554332 12457888888764 589999999776432210 23589999998876 577774
No 107
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=88.87 E-value=1.5 Score=37.86 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=37.7
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHh----CC--CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEE--EeCCEEEc
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKS----YR--VGVDERDISMDSSYRKELQDLLGVEGKAITLPQV--FIRGKHIG 288 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~----~g--V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqV--FVdG~~IG 288 (366)
||-|+.+||| +|..+.-+|+. +. +.|..+|++.++ +|.+.++ ...+|.+ |-+|+.++
T Consensus 18 VV~F~A~WCg------pCk~m~P~le~la~~~~~~v~f~kVDvD~~~----~la~~~~----V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 18 VIRFGRDWDP------VCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP----DFNKMYE----LYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEECCCCh------hHHHHHHHHHHHHHHccCceEEEEEECCCCH----HHHHHcC----CCCCCEEEEEECCEEEE
Confidence 4457777775 99977666643 22 567888888664 4556555 4678877 45887663
No 108
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=88.82 E-value=0.41 Score=37.03 Aligned_cols=38 Identities=29% Similarity=0.667 Sum_probs=19.7
Q ss_pred eeeCCCCCCCceeeecC------CCccccCCccccCcccc----CCCC
Q 017790 326 FVPCSHCCGSRKVFDEE------DGQLRRCTNCNENGLIR----CPAC 363 (366)
Q Consensus 326 fvpC~~C~GS~Kv~~e~------~~~~~rC~~CNENGLir----Cp~C 363 (366)
...|..|+|+-.+.... ......|+.|+=.|.+. |+.|
T Consensus 15 ~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C 62 (66)
T PF00684_consen 15 PKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTC 62 (66)
T ss_dssp -EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSS
T ss_pred CcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCC
Confidence 36777777776654321 01145777777777664 6665
No 109
>PRK14300 chaperone protein DnaJ; Provisional
Probab=88.69 E-value=0.45 Score=48.19 Aligned_cols=64 Identities=22% Similarity=0.568 Sum_probs=42.6
Q ss_pred cHHHHhcCCCCc---ccccccccCCccc------eeeCCCCCCCceeeecCC--CccccCCccccCccc---cCCCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDAR------FVPCSHCCGSRKVFDEED--GQLRRCTNCNENGLI---RCPACS 364 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~r------fvpC~~C~GS~Kv~~e~~--~~~~rC~~CNENGLi---rCp~C~ 364 (366)
.|++++.+.... .....|..|.|.+ ...|..|+|+-++....+ .....|+.|+-.|-+ +|+.|.
T Consensus 128 sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 205 (372)
T PRK14300 128 NLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCH 205 (372)
T ss_pred EHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCC
Confidence 466776665432 1245788888866 578999999977643221 024589999999966 577773
No 110
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=88.49 E-value=1.8 Score=35.72 Aligned_cols=63 Identities=14% Similarity=0.245 Sum_probs=38.8
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHh----C-CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEE--EeCCEEEccc
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKS----Y-RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQV--FIRGKHIGGA 290 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~----~-gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqV--FVdG~~IGGa 290 (366)
||.|++++|+ .|..+...|+. + ++.|..+|++.+ +|.+.++ ...+|.+ |-+|+.++-.
T Consensus 28 vv~F~a~~c~------~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~----i~~~Pt~~~f~~G~~v~~~ 92 (113)
T cd02957 28 VVHFYEPGFP------RCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLD----IKVLPTLLVYKNGELIDNI 92 (113)
T ss_pred EEEEeCCCCC------cHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcC----CCcCCEEEEEECCEEEEEE
Confidence 4456666664 89976665543 3 467777777532 5656555 4678866 5688777655
Q ss_pred hHHHH
Q 017790 291 EEIKQ 295 (366)
Q Consensus 291 DEv~~ 295 (366)
.-...
T Consensus 93 ~G~~~ 97 (113)
T cd02957 93 VGFEE 97 (113)
T ss_pred ecHHH
Confidence 44433
No 111
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=88.45 E-value=2 Score=39.72 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=38.9
Q ss_pred CCcEEEEEe---CCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe--CC
Q 017790 215 NNKIVIYFT---SLRGIRRTYEDCCSVRMIFKSY-----RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI--RG 284 (366)
Q Consensus 215 ~~kVVVYTT---SL~gIRKT~~dC~raK~IL~~~-----gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV--dG 284 (366)
.-.|++|++ +||+ .|..+..+|+.. ++.+..+|++.|. ..++.+.++ ...+|.+.+ +|
T Consensus 20 ~~~i~~f~~~~a~wC~------~C~~~~p~l~~la~~~~~~~i~~v~vd~~~--~~~l~~~~~----V~~~Pt~~~f~~g 87 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQ------YCKETEQLLEELSEVSPKLKLEIYDFDTPE--DKEEAEKYG----VERVPTTIILEEG 87 (215)
T ss_pred CeEEEEEcCCCCCCCC------chHHHHHHHHHHHhhCCCceEEEEecCCcc--cHHHHHHcC----CCccCEEEEEeCC
Confidence 345888888 7775 899877777544 2456677776543 245556555 567888765 55
Q ss_pred EEE
Q 017790 285 KHI 287 (366)
Q Consensus 285 ~~I 287 (366)
+.+
T Consensus 88 ~~~ 90 (215)
T TIGR02187 88 KDG 90 (215)
T ss_pred eee
Confidence 443
No 112
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=87.74 E-value=3.2 Score=34.76 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=36.3
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHh----C-CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEE--EeCCEEEc
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKS----Y-RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQV--FIRGKHIG 288 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~----~-gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqV--FVdG~~IG 288 (366)
||.|+++||+ .|..+..+|+. + ++.+..+|++... ++.+.++ ...+|.+ |-+|+-++
T Consensus 26 vV~f~a~~c~------~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~----~l~~~~~----v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 26 VCHFYHPEFF------RCKIMDKHLEILAKKHLETKFIKVNAEKAP----FLVEKLN----IKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEECCCCc------cHHHHHHHHHHHHHHcCCCEEEEEEcccCH----HHHHHCC----CccCCEEEEEECCEEEE
Confidence 4455556654 89977766644 2 5788888887654 4556555 4567766 55886554
No 113
>PRK14290 chaperone protein DnaJ; Provisional
Probab=87.58 E-value=0.5 Score=47.73 Aligned_cols=64 Identities=22% Similarity=0.562 Sum_probs=41.0
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce-----eeCCCCCCCceeeecCCCc------cccCCccccCccc---cCCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF-----VPCSHCCGSRKVFDEEDGQ------LRRCTNCNENGLI---RCPAC 363 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf-----vpC~~C~GS~Kv~~e~~~~------~~rC~~CNENGLi---rCp~C 363 (366)
.|++++.+.... .....|..|.|.+. ..|..|+|+-.+......+ ...|+.|+-.|-+ +|+.|
T Consensus 132 sLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C 211 (365)
T PRK14290 132 SLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRC 211 (365)
T ss_pred cHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCC
Confidence 466666553321 12457888888775 5799999998764332111 2589999988844 67777
Q ss_pred C
Q 017790 364 S 364 (366)
Q Consensus 364 ~ 364 (366)
.
T Consensus 212 ~ 212 (365)
T PRK14290 212 N 212 (365)
T ss_pred C
Confidence 3
No 114
>PTZ00057 glutathione s-transferase; Provisional
Probab=87.46 E-value=4.6 Score=36.60 Aligned_cols=73 Identities=15% Similarity=0.332 Sum_probs=48.9
Q ss_pred CcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHH-HHHHHHHHHc-CCCCCCcccEEEeCCEEEccchHH
Q 017790 216 NKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSS-YRKELQDLLG-VEGKAITLPQVFIRGKHIGGAEEI 293 (366)
Q Consensus 216 ~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e-~reEL~elLg-~~tg~~TVPqVFVdG~~IGGaDEv 293 (366)
++++||+...++ .+.+++-+|+..||+|+.+.+....+ +. +..+... .......||.+.+||..|....-+
T Consensus 3 ~~~~L~y~~~~~------~~~~vrl~L~~~gi~ye~~~~~~~~~~~~-~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI 75 (205)
T PTZ00057 3 EEIVLYYFDARG------KAELIRLIFAYLGIEYTDKRFGENGDAFI-EFKNFKKEKDTPFEQVPILEMDNIIFAQSQAI 75 (205)
T ss_pred CceEEEecCCCc------chHHHHHHHHHcCCCeEEEeccccchHHH-HHHhccccCCCCCCCCCEEEECCEEEecHHHH
Confidence 347888866554 67799999999999999987753221 11 1111110 123467899999999877766666
Q ss_pred HH
Q 017790 294 KQ 295 (366)
Q Consensus 294 ~~ 295 (366)
..
T Consensus 76 ~~ 77 (205)
T PTZ00057 76 VR 77 (205)
T ss_pred HH
Confidence 55
No 115
>PRK14289 chaperone protein DnaJ; Provisional
Probab=86.85 E-value=0.54 Score=47.75 Aligned_cols=64 Identities=25% Similarity=0.575 Sum_probs=42.4
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce------eeCCCCCCCceeeecCC------CccccCCccccCccc---cCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF------VPCSHCCGSRKVFDEED------GQLRRCTNCNENGLI---RCPA 362 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf------vpC~~C~GS~Kv~~e~~------~~~~rC~~CNENGLi---rCp~ 362 (366)
.|++++.+..+. .....|..|.|.+. ..|..|+|+-++..... .....|+.|+-.|-+ +|+.
T Consensus 137 sLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~ 216 (386)
T PRK14289 137 NLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKK 216 (386)
T ss_pred EHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCC
Confidence 466666654432 12457888877764 67999999987653210 124689999999865 6777
Q ss_pred CC
Q 017790 363 CS 364 (366)
Q Consensus 363 C~ 364 (366)
|.
T Consensus 217 C~ 218 (386)
T PRK14289 217 CG 218 (386)
T ss_pred CC
Confidence 74
No 116
>PTZ00051 thioredoxin; Provisional
Probab=86.74 E-value=3 Score=32.72 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=33.9
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHh-----CCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEE--eCCEEE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKS-----YRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVF--IRGKHI 287 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~-----~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVF--VdG~~I 287 (366)
++.|+.+|| ..|.++...|+. .++.+..+|++.. .++.+.++ ...+|.++ -+|+.+
T Consensus 22 li~f~~~~C------~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~----~~~~~~~~----v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 22 IVDFYAEWC------GPCKRIAPFYEECSKEYTKMVFVKVDVDEL----SEVAEKEN----ITSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEECCCC------HHHHHHhHHHHHHHHHcCCcEEEEEECcch----HHHHHHCC----CceeeEEEEEeCCeEE
Confidence 455665555 589977666655 2577777887643 24555554 45677654 477444
No 117
>PRK15113 glutathione S-transferase; Provisional
Probab=86.68 E-value=3.3 Score=37.75 Aligned_cols=72 Identities=10% Similarity=0.128 Sum_probs=48.6
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCH-H-HHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHH
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDS-S-YRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIK 294 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~-e-~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~ 294 (366)
.++||.... .+..+|.+|+-+|..+||+|+.+.|+... + ..+++.+. .-...||.+..||..|--..-+.
T Consensus 5 ~~~Ly~~~~----~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~----nP~g~VP~L~~~~~~l~ES~aI~ 76 (214)
T PRK15113 5 AITLYSDAH----FFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGY----SLTRRVPTLQHDDFELSESSAIA 76 (214)
T ss_pred eEEEEeCCC----CCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhc----CCCCCCCEEEECCEEEecHHHHH
Confidence 478897531 12358899999999999999988876532 1 22445443 23568999998887776555555
Q ss_pred HH
Q 017790 295 QL 296 (366)
Q Consensus 295 ~L 296 (366)
++
T Consensus 77 ~Y 78 (214)
T PRK15113 77 EY 78 (214)
T ss_pred HH
Confidence 43
No 118
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=86.43 E-value=4 Score=33.20 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=34.9
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHh----C-CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEE--eCCEEE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKS----Y-RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVF--IRGKHI 287 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~----~-gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVF--VdG~~I 287 (366)
||-|+.+||+ .|......|+. + ++.|..+|++.+.. ..++.+.++ ...+|.++ -+|+.+
T Consensus 19 vv~F~a~wC~------~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~-~~~l~~~~~----V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSG------PSVKIYPTMVKLSRTCNDVVFLLVNGDENDS-TMELCRREK----IIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCH------hHHHHhHHHHHHHHHCCCCEEEEEECCCChH-HHHHHHHcC----CCcCCEEEEEeCCeEE
Confidence 4556666665 89866655543 3 46677788765532 234555554 46678654 477543
No 119
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=86.11 E-value=5.5 Score=30.69 Aligned_cols=56 Identities=16% Similarity=0.442 Sum_probs=33.6
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHH----hCC--CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe--CCEEE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFK----SYR--VGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI--RGKHI 287 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~----~~g--V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV--dG~~I 287 (366)
|+.|++++| ..|..+...|+ .++ +.+-.+|++.+. ++.+.++ ...+|.+++ +|+.+
T Consensus 18 vi~f~~~~C------~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~----v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 18 LVDFWAPWC------GPCKMIAPILEELAKEYEGKVKFVKLNVDENP----DIAAKYG----IRSIPTLLLFKNGKEV 81 (101)
T ss_pred EEEEECCCC------HHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH----HHHHHcC----CCcCCEEEEEeCCcEe
Confidence 444555544 48886554443 333 677788877554 3445554 568998876 66543
No 120
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=85.65 E-value=0.58 Score=47.48 Aligned_cols=21 Identities=29% Similarity=0.746 Sum_probs=13.6
Q ss_pred cccccCCccceeeCCCCCCCc
Q 017790 316 SVCESCGDARFVPCSHCCGSR 336 (366)
Q Consensus 316 ~~C~~CGg~rfvpC~~C~GS~ 336 (366)
..|.+|-|.+-+.|..|||+-
T Consensus 188 ~~ch~c~gRG~~vc~gc~g~G 208 (406)
T KOG2813|consen 188 TFCHACLGRGAMVCHGCSGSG 208 (406)
T ss_pred hhhhcccCCCceeccCcCCCC
Confidence 346666666666666666664
No 121
>PRK14292 chaperone protein DnaJ; Provisional
Probab=85.38 E-value=0.64 Score=46.92 Aligned_cols=64 Identities=28% Similarity=0.610 Sum_probs=42.2
Q ss_pred cHHHHhcCCCCc---ccccccccCCccc-------eeeCCCCCCCceeeecC--C-C---ccccCCccccCccc---cCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDAR-------FVPCSHCCGSRKVFDEE--D-G---QLRRCTNCNENGLI---RCP 361 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~r-------fvpC~~C~GS~Kv~~e~--~-~---~~~rC~~CNENGLi---rCp 361 (366)
.|++++.+..+. .....|..|.|.+ ...|..|+|+-.+.... . + ....|+.|+-.|.+ +|+
T Consensus 122 sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~ 201 (371)
T PRK14292 122 TLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCT 201 (371)
T ss_pred cHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCC
Confidence 466666654432 1246799998876 46799999997654221 0 0 13589999999966 677
Q ss_pred CCC
Q 017790 362 ACS 364 (366)
Q Consensus 362 ~C~ 364 (366)
.|.
T Consensus 202 ~C~ 204 (371)
T PRK14292 202 VCR 204 (371)
T ss_pred CCC
Confidence 773
No 122
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=85.22 E-value=4.3 Score=35.08 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=40.6
Q ss_pred cEEEEEeCCCCCCCCCchHH----------HHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEE--EeCC
Q 017790 217 KIVIYFTSLRGIRRTYEDCC----------SVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQV--FIRG 284 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~----------raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqV--FVdG 284 (366)
.||+|+..+++ - ...|. .+..+|+..+|.+..+|++.+. +|.+.++ ...+|.+ |.+|
T Consensus 29 ~vvv~f~a~wc-~--p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~----~La~~~~----I~~iPTl~lfk~G 97 (120)
T cd03065 29 LCLLYHEPVES-D--KEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA----KVAKKLG----LDEEDSIYVFKDD 97 (120)
T ss_pred eEEEEECCCcC-C--hhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH----HHHHHcC----CccccEEEEEECC
Confidence 47888877764 0 00254 3566777789999999998764 5666665 4566765 7788
Q ss_pred EEE
Q 017790 285 KHI 287 (366)
Q Consensus 285 ~~I 287 (366)
+.+
T Consensus 98 ~~v 100 (120)
T cd03065 98 EVI 100 (120)
T ss_pred EEE
Confidence 755
No 123
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=85.16 E-value=1.9 Score=38.56 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=44.0
Q ss_pred chHHHHHHHHHhCCCcEEEEEccCCH--H-HHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHH
Q 017790 233 EDCCSVRMIFKSYRVGVDERDISMDS--S-YRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLN 297 (366)
Q Consensus 233 ~dC~raK~IL~~~gV~ydErDVsmD~--e-~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~ 297 (366)
..+.+|+.+|..+||+|+.+.|+... + ...++.+ .....+||.+..+|..|-....+....
T Consensus 9 ~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~----~nP~g~vP~L~~~g~~l~ES~aI~~yl 72 (210)
T TIGR01262 9 SCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLA----LNPQGLVPTLDIDGEVLTQSLAIIEYL 72 (210)
T ss_pred CchHHHHHHHHHCCCCceEEecccccccccCChhhhh----cCCCCcCCEEEECCEEeecHHHHHHHH
Confidence 46889999999999999998887411 1 1234443 233578999999998887777776644
No 124
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=85.08 E-value=1.2 Score=34.37 Aligned_cols=37 Identities=27% Similarity=0.799 Sum_probs=25.7
Q ss_pred ccccccCCccce---------------eeCCCCCCCceeeecCCCccccCCccccCc
Q 017790 315 VSVCESCGDARF---------------VPCSHCCGSRKVFDEEDGQLRRCTNCNENG 356 (366)
Q Consensus 315 ~~~C~~CGg~rf---------------vpC~~C~GS~Kv~~e~~~~~~rC~~CNENG 356 (366)
...|..|.|.++ .+|..|+|+-+++ +. .+|+.|+-+|
T Consensus 15 ~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~~----~~C~~C~G~g 66 (66)
T PF00684_consen 15 PKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-EK----DPCKTCKGSG 66 (66)
T ss_dssp -EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--TS----SB-SSSTTSS
T ss_pred CcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-CC----CCCCCCCCcC
Confidence 458999999887 4799999999887 32 3899998664
No 125
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=84.98 E-value=3.3 Score=35.05 Aligned_cols=62 Identities=16% Similarity=0.363 Sum_probs=37.9
Q ss_pred cEEE-EEeCCCCCCCCCchHHHHHHHHHhCC-----CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEE--eCC----
Q 017790 217 KIVI-YFTSLRGIRRTYEDCCSVRMIFKSYR-----VGVDERDISMDSSYRKELQDLLGVEGKAITLPQVF--IRG---- 284 (366)
Q Consensus 217 kVVV-YTTSL~gIRKT~~dC~raK~IL~~~g-----V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVF--VdG---- 284 (366)
.||| |+++||| .|..+.-+|+.+- +.|-.+||+. -.++.+.++ ...+|.+. -+|
T Consensus 23 liVvdF~a~wCg------PCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~~~~----V~~~PTf~f~k~g~~~~ 88 (106)
T KOG0907|consen 23 LVVVDFYATWCG------PCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAKEFN----VKAMPTFVFYKGGEEVD 88 (106)
T ss_pred eEEEEEECCCCc------chhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHHhcC----ceEeeEEEEEECCEEEE
Confidence 3455 6677776 9998776666543 5567788875 233444343 57888873 355
Q ss_pred EEEccchH
Q 017790 285 KHIGGAEE 292 (366)
Q Consensus 285 ~~IGGaDE 292 (366)
+++|+..+
T Consensus 89 ~~vGa~~~ 96 (106)
T KOG0907|consen 89 EVVGANKA 96 (106)
T ss_pred EEecCCHH
Confidence 55565544
No 126
>PRK09381 trxA thioredoxin; Provisional
Probab=84.83 E-value=7.4 Score=31.36 Aligned_cols=57 Identities=16% Similarity=0.371 Sum_probs=34.5
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHH----hC--CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe--CCEEEc
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFK----SY--RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI--RGKHIG 288 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~----~~--gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV--dG~~IG 288 (366)
||.|++++| ..|..+...|+ .+ ++.+..+|++.+. ++.+.++ ..++|.+++ +|+.++
T Consensus 25 vv~f~~~~C------~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~----~~~~~~~----v~~~Pt~~~~~~G~~~~ 89 (109)
T PRK09381 25 LVDFWAEWC------GPCKMIAPILDEIADEYQGKLTVAKLNIDQNP----GTAPKYG----IRGIPTLLLFKNGEVAA 89 (109)
T ss_pred EEEEECCCC------HHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh----hHHHhCC----CCcCCEEEEEeCCeEEE
Confidence 455555555 48997655443 44 3566777776554 3334444 578998855 887664
No 127
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=84.82 E-value=6.4 Score=31.00 Aligned_cols=63 Identities=10% Similarity=0.083 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhCCCcEEEEEccCCHH-H--HHHHHHHH-cCCCCCCcccEEEeCCEEEccchHHHHH
Q 017790 234 DCCSVRMIFKSYRVGVDERDISMDSS-Y--RKELQDLL-GVEGKAITLPQVFIRGKHIGGAEEIKQL 296 (366)
Q Consensus 234 dC~raK~IL~~~gV~ydErDVsmD~e-~--reEL~elL-g~~tg~~TVPqVFVdG~~IGGaDEv~~L 296 (366)
.|.+++.+|...|++|+.+.|++... . .++..... .......+||.+..||..+.-..-+++.
T Consensus 11 ~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~Y 77 (82)
T cd03075 11 LAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRY 77 (82)
T ss_pred ccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHH
Confidence 68899999999999999888875431 1 12222111 0011356899999888777665555543
No 128
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.65 E-value=1.1 Score=40.76 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=38.0
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhC------CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEE--EeCCEEE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSY------RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQV--FIRGKHI 287 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~------gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqV--FVdG~~I 287 (366)
||-|++.||| +|..+.-+|+.+ .+.+..+|++.+.+ |.+.++ ...+|.| |-||+-+
T Consensus 65 lVdF~A~WCg------PCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e----la~~Y~----I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 65 LVDFHAEWCG------PCKMLGPILEELVSEYAGKFKLYKVDTDEHPE----LAEDYE----ISAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEecCcCc------cHhHhhHHHHHHHHhhcCeEEEEEEccccccc----hHhhcc----eeeeeEEEEEECCEEe
Confidence 6779999987 999777666653 35577788876653 444443 5678877 5588543
No 129
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=84.47 E-value=5.5 Score=34.74 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=40.1
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHH----hCC--CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEE-e--CCEEE-
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFK----SYR--VGVDERDISMDSSYRKELQDLLGVEGKAITLPQVF-I--RGKHI- 287 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~----~~g--V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVF-V--dG~~I- 287 (366)
||.|+++||+ .|.+....|. .++ +.|..+|++.+. . .++.+.++ ...+|.++ + +|+.+
T Consensus 24 vV~F~A~WC~------~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~-~~~~~~~~----V~~iPt~v~~~~~G~~v~ 91 (142)
T cd02950 24 LVEFYADWCT------VCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-W-LPEIDRYR----VDGIPHFVFLDREGNEEG 91 (142)
T ss_pred EEEEECCcCH------HHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-c-HHHHHHcC----CCCCCEEEEECCCCCEEE
Confidence 4456666664 8986655544 332 556677775432 1 23444444 56788775 4 46433
Q ss_pred --ccchHHHHHHhcCcHHHHhcCC
Q 017790 288 --GGAEEIKQLNETGDLAMLLKGF 309 (366)
Q Consensus 288 --GGaDEv~~L~EsGeL~kLL~~~ 309 (366)
.|+..-.+|.+ .|++++++.
T Consensus 92 ~~~G~~~~~~l~~--~l~~l~~~~ 113 (142)
T cd02950 92 QSIGLQPKQVLAQ--NLDALVAGE 113 (142)
T ss_pred EEeCCCCHHHHHH--HHHHHHcCC
Confidence 23333222322 455666544
No 130
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=84.39 E-value=2.8 Score=32.56 Aligned_cols=52 Identities=13% Similarity=0.355 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHh-------C-CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKS-------Y-RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~-------~-gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV 282 (366)
-||+|++++|+ .|......|+. . ++.+..+|.+.+. ++.+.++ ...+|.+|+
T Consensus 16 ~~i~f~~~~C~------~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~----i~~~P~~~~ 75 (102)
T TIGR01126 16 VLVEFYAPWCG------HCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK----DLASRFG----VSGFPTIKF 75 (102)
T ss_pred EEEEEECCCCH------HHHhhChHHHHHHHHhccCCceEEEEEEccchH----HHHHhCC----CCcCCEEEE
Confidence 36777777664 78764443322 2 2667777776543 4555554 567998854
No 131
>PLN02473 glutathione S-transferase
Probab=84.10 E-value=4.2 Score=36.66 Aligned_cols=70 Identities=10% Similarity=0.025 Sum_probs=48.1
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCH--HHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHH
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDS--SYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQ 295 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~--e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~ 295 (366)
+.||.... ...+.+|+-+|..+||+|+.+.|+... ....++.+. . ...+||.+..+|..|....-+.+
T Consensus 3 ~kLy~~~~------s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~-n---P~g~vP~L~~~g~~l~ES~aI~~ 72 (214)
T PLN02473 3 VKVYGQIK------AANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLR-Q---PFGQVPAIEDGDLKLFESRAIAR 72 (214)
T ss_pred eEEecCCC------CCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhh-C---CCCCCCeEEECCEEEEehHHHHH
Confidence 45776432 347789999999999999888665432 123344432 2 24689999999988888777776
Q ss_pred HH
Q 017790 296 LN 297 (366)
Q Consensus 296 L~ 297 (366)
+.
T Consensus 73 YL 74 (214)
T PLN02473 73 YY 74 (214)
T ss_pred HH
Confidence 43
No 132
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=83.87 E-value=1.2 Score=46.26 Aligned_cols=64 Identities=28% Similarity=0.600 Sum_probs=38.3
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce-----eeCCCCCCCceeeecCC-C-----ccccCCccccCccc-----cCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF-----VPCSHCCGSRKVFDEED-G-----QLRRCTNCNENGLI-----RCP 361 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf-----vpC~~C~GS~Kv~~e~~-~-----~~~rC~~CNENGLi-----rCp 361 (366)
.|++++.+..+. .....|..|.|.+. ..|..|+|+-.++.... + ....|+.|+--|-+ +|+
T Consensus 133 tLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~ 212 (421)
T PTZ00037 133 TLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCK 212 (421)
T ss_pred eHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCC
Confidence 466666554432 12356777777664 56888888865432110 1 13478888888865 477
Q ss_pred CCC
Q 017790 362 ACS 364 (366)
Q Consensus 362 ~C~ 364 (366)
.|.
T Consensus 213 ~C~ 215 (421)
T PTZ00037 213 NCS 215 (421)
T ss_pred cCC
Confidence 774
No 133
>PRK14291 chaperone protein DnaJ; Provisional
Probab=83.86 E-value=1.1 Score=45.72 Aligned_cols=63 Identities=27% Similarity=0.654 Sum_probs=41.5
Q ss_pred cHHHHhcCCCCc---ccccccccCCccc------eeeCCCCCCCceeeecCCC--ccccCCccccCcccc--CCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDAR------FVPCSHCCGSRKVFDEEDG--QLRRCTNCNENGLIR--CPAC 363 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~r------fvpC~~C~GS~Kv~~e~~~--~~~rC~~CNENGLir--Cp~C 363 (366)
.|++++.+..+. .....|..|.|.+ ...|..|+|+-.+...... ....|+.|+--|.++ |+.|
T Consensus 139 sLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~C~~C 214 (382)
T PRK14291 139 SLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLREPCSKC 214 (382)
T ss_pred EHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEEccCCCCC
Confidence 466776654432 1345799998877 4679999999876543211 135899999999653 5555
No 134
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=83.52 E-value=1.2 Score=50.07 Aligned_cols=52 Identities=27% Similarity=0.492 Sum_probs=37.6
Q ss_pred EEEccchHHHHHHhcCcHHHHhcCCCCcc-----cccccccCCccce------------eeCCCCCCCce
Q 017790 285 KHIGGAEEIKQLNETGDLAMLLKGFPVVN-----AVSVCESCGDARF------------VPCSHCCGSRK 337 (366)
Q Consensus 285 ~~IGGaDEv~~L~EsGeL~kLL~~~~~~~-----~~~~C~~CGg~rf------------vpC~~C~GS~K 337 (366)
.|.|=+|++++|..+-...+. .++.+.. .++.|+.|+|-++ |+|+.|+|.+.
T Consensus 696 TYtg~Fd~IR~lFA~tpeAK~-rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 696 TYTGVFDDIRELFAGTPEAKA-RGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred chhcchHHHHHHHhcChHHHH-cCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCccc
Confidence 466778999888875544444 3333321 4689999999987 89999999865
No 135
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=83.35 E-value=3.4 Score=39.99 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=45.5
Q ss_pred CchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHHh
Q 017790 232 YEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNE 298 (366)
Q Consensus 232 ~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~E 298 (366)
|++|.+|+-+|+.+|++|+.+.|+... .-+++.++. -...||.+..+|..|....-+.+..+
T Consensus 73 cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iN----P~GkVPvL~~d~~~L~ES~aI~~YL~ 134 (265)
T PLN02817 73 CPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKIS----PEGKVPVVKLDEKWVADSDVITQALE 134 (265)
T ss_pred CcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhC----CCCCCCEEEECCEEEecHHHHHHHHH
Confidence 568999999999999999988877643 123344332 25689999999988877777666443
No 136
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=83.22 E-value=4.9 Score=33.40 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=30.7
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHH-------h--CCCcEEEEEccCCHH---------HHHHHHHHHcCCCCCCcccE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFK-------S--YRVGVDERDISMDSS---------YRKELQDLLGVEGKAITLPQ 279 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~-------~--~gV~ydErDVsmD~e---------~reEL~elLg~~tg~~TVPq 279 (366)
+|.|+++|| .+|.+....|. . .++.+..+|++.+.. -..++...++ ...+|.
T Consensus 18 lv~f~a~wC------~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~----v~~~Pt 87 (125)
T cd02951 18 LLLFSQPGC------PYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR----VRFTPT 87 (125)
T ss_pred EEEEeCCCC------HHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC----CccccE
Confidence 455666655 48997654331 1 245556666654321 1245655555 567898
Q ss_pred E-EeC
Q 017790 280 V-FIR 283 (366)
Q Consensus 280 V-FVd 283 (366)
+ |++
T Consensus 88 ~~~~~ 92 (125)
T cd02951 88 VIFLD 92 (125)
T ss_pred EEEEc
Confidence 5 454
No 137
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=83.22 E-value=1 Score=46.68 Aligned_cols=41 Identities=27% Similarity=0.797 Sum_probs=32.1
Q ss_pred ccccccCCccce---------------eeCCCCCCCceeeecCCCccccCCccccCcccc
Q 017790 315 VSVCESCGDARF---------------VPCSHCCGSRKVFDEEDGQLRRCTNCNENGLIR 359 (366)
Q Consensus 315 ~~~C~~CGg~rf---------------vpC~~C~GS~Kv~~e~~~~~~rC~~CNENGLir 359 (366)
...|..|+|.+. .+|..|+|.-++.... .+|..|+-.|.++
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~----~~C~~C~G~g~v~ 221 (421)
T PTZ00037 166 FVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES----KKCKNCSGKGVKK 221 (421)
T ss_pred CccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc----ccCCcCCCcceee
Confidence 357999998874 3899999998887532 3799999888764
No 138
>PRK14296 chaperone protein DnaJ; Provisional
Probab=82.76 E-value=1 Score=45.84 Aligned_cols=64 Identities=27% Similarity=0.633 Sum_probs=40.9
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce------eeCCCCCCCceeeecCCC------ccccCCccccCccc---cCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF------VPCSHCCGSRKVFDEEDG------QLRRCTNCNENGLI---RCPA 362 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf------vpC~~C~GS~Kv~~e~~~------~~~rC~~CNENGLi---rCp~ 362 (366)
.|++++.+.... .....|..|.|.+. ..|..|+|+-.+...... ....|+.|+--|-+ +|+.
T Consensus 132 tlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~ 211 (372)
T PRK14296 132 TFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKN 211 (372)
T ss_pred cHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccC
Confidence 466666554432 12457888888775 569999999776432111 13589999888865 4666
Q ss_pred CC
Q 017790 363 CS 364 (366)
Q Consensus 363 C~ 364 (366)
|.
T Consensus 212 C~ 213 (372)
T PRK14296 212 CK 213 (372)
T ss_pred CC
Confidence 64
No 139
>PRK14293 chaperone protein DnaJ; Provisional
Probab=82.67 E-value=1.4 Score=44.61 Aligned_cols=63 Identities=29% Similarity=0.626 Sum_probs=40.6
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce------eeCCCCCCCceeeecCC------CccccCCccccCccc---cCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF------VPCSHCCGSRKVFDEED------GQLRRCTNCNENGLI---RCPA 362 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf------vpC~~C~GS~Kv~~e~~------~~~~rC~~CNENGLi---rCp~ 362 (366)
.|++++.+.... .....|..|.|.+. ..|..|+|.-.+..... ....+|..|+-.|-+ +|..
T Consensus 126 sLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 205 (374)
T PRK14293 126 DFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDA 205 (374)
T ss_pred eHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCC
Confidence 466666554332 12457888888664 57999999987643210 113689999999987 4555
Q ss_pred C
Q 017790 363 C 363 (366)
Q Consensus 363 C 363 (366)
|
T Consensus 206 C 206 (374)
T PRK14293 206 C 206 (374)
T ss_pred C
Confidence 5
No 140
>PRK14283 chaperone protein DnaJ; Provisional
Probab=82.40 E-value=1.5 Score=44.62 Aligned_cols=64 Identities=23% Similarity=0.584 Sum_probs=41.8
Q ss_pred cHHHHhcCCCCc---ccccccccCCccc------eeeCCCCCCCceeeecCC------CccccCCccccCccc---cCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDAR------FVPCSHCCGSRKVFDEED------GQLRRCTNCNENGLI---RCPA 362 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~r------fvpC~~C~GS~Kv~~e~~------~~~~rC~~CNENGLi---rCp~ 362 (366)
.|++++.+.... .....|..|.|.+ ...|..|+|+-.+..... .....|+.|+-.|.+ +|..
T Consensus 129 sLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 208 (378)
T PRK14283 129 TLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSN 208 (378)
T ss_pred eHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCC
Confidence 567777665432 1235688887755 467999999977643210 124589999999976 6777
Q ss_pred CC
Q 017790 363 CS 364 (366)
Q Consensus 363 C~ 364 (366)
|.
T Consensus 209 C~ 210 (378)
T PRK14283 209 CH 210 (378)
T ss_pred CC
Confidence 74
No 141
>PRK14285 chaperone protein DnaJ; Provisional
Probab=82.29 E-value=1 Score=45.56 Aligned_cols=64 Identities=28% Similarity=0.582 Sum_probs=39.9
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce------eeCCCCCCCceeeecCC--CccccCCccccCccc---cCCCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF------VPCSHCCGSRKVFDEED--GQLRRCTNCNENGLI---RCPACS 364 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf------vpC~~C~GS~Kv~~e~~--~~~~rC~~CNENGLi---rCp~C~ 364 (366)
.|++++.+..+. .....|..|.|.+. ..|..|+|+-.+....+ .....|+.|+-.|-+ +|+.|.
T Consensus 129 tlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 206 (365)
T PRK14285 129 SLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCK 206 (365)
T ss_pred EHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCC
Confidence 466666554331 12457888888764 57999999876643211 014588888888865 466663
No 142
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=82.21 E-value=1 Score=45.78 Aligned_cols=64 Identities=27% Similarity=0.499 Sum_probs=44.0
Q ss_pred cHHHHhcCCCCcc---cccccccCCccce-----eeCCCCCCCceee--ecC-----CCccccCCccccCccc-----cC
Q 017790 301 DLAMLLKGFPVVN---AVSVCESCGDARF-----VPCSHCCGSRKVF--DEE-----DGQLRRCTNCNENGLI-----RC 360 (366)
Q Consensus 301 eL~kLL~~~~~~~---~~~~C~~CGg~rf-----vpC~~C~GS~Kv~--~e~-----~~~~~rC~~CNENGLi-----rC 360 (366)
.|+++..+-.+.- ....|..|-|.++ -.|..|+|+.-.. ... +-..++|..||..|-+ +|
T Consensus 110 ~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C 189 (337)
T KOG0712|consen 110 TLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRC 189 (337)
T ss_pred EHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccC
Confidence 4777776532221 2457888877776 4599999997532 111 1236799999999999 99
Q ss_pred CCCC
Q 017790 361 PACS 364 (366)
Q Consensus 361 p~C~ 364 (366)
+.|.
T Consensus 190 ~~C~ 193 (337)
T KOG0712|consen 190 KTCS 193 (337)
T ss_pred cccc
Confidence 9995
No 143
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=82.12 E-value=10 Score=34.52 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=54.9
Q ss_pred CCCcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccc---
Q 017790 214 SNNKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGA--- 290 (366)
Q Consensus 214 ~~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGa--- 290 (366)
..-++++|...-|| -|..-.+.|+..|..+...+.+ .+..|+++++-...-.+-=...|+|.||=|.
T Consensus 24 ~~~~~~vyksPnCG------CC~~w~~~mk~~Gf~Vk~~~~~----d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa 93 (149)
T COG3019 24 QATEMVVYKSPNCG------CCDEWAQHMKANGFEVKVVETD----DFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPA 93 (149)
T ss_pred ceeeEEEEeCCCCc------cHHHHHHHHHhCCcEEEEeecC----cHHHHHHhcCCChhhccccEEEEcCEEEeccCCH
Confidence 45579999877665 6667788999998888776654 3456777776322233455689999999885
Q ss_pred hHHHHHHhcCc
Q 017790 291 EEIKQLNETGD 301 (366)
Q Consensus 291 DEv~~L~EsGe 301 (366)
+++.+|.+++.
T Consensus 94 ~aI~~ll~~~p 104 (149)
T COG3019 94 EAIARLLAEKP 104 (149)
T ss_pred HHHHHHHhCCC
Confidence 66666666655
No 144
>PRK14282 chaperone protein DnaJ; Provisional
Probab=81.75 E-value=1.2 Score=45.03 Aligned_cols=63 Identities=29% Similarity=0.708 Sum_probs=40.1
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce------eeCCCCCCCceeeecC------CCccccCCccccCcccc---CCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF------VPCSHCCGSRKVFDEE------DGQLRRCTNCNENGLIR---CPA 362 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf------vpC~~C~GS~Kv~~e~------~~~~~rC~~CNENGLir---Cp~ 362 (366)
.|++++.+.... .....|..|.|.+. ..|..|+|+-.+.... ......|+.|+-.|.+. |+.
T Consensus 135 slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~ 214 (369)
T PRK14282 135 TLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHE 214 (369)
T ss_pred EHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCC
Confidence 466666554332 12357888888664 6799999997764321 01245899999999764 555
Q ss_pred C
Q 017790 363 C 363 (366)
Q Consensus 363 C 363 (366)
|
T Consensus 215 C 215 (369)
T PRK14282 215 C 215 (369)
T ss_pred C
Confidence 4
No 145
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=81.69 E-value=5 Score=32.44 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=32.4
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHh--------C----CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKS--------Y----RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~--------~----gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV 282 (366)
+|.|+++||+ .|.+....|+. + .+.+-.+|.+.+. ++.+.++ ..++|.+++
T Consensus 22 lv~F~a~wC~------~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~----~l~~~~~----v~~~Ptl~~ 84 (108)
T cd02996 22 LVNFYADWCR------FSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES----DIADRYR----INKYPTLKL 84 (108)
T ss_pred EEEEECCCCH------HHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH----HHHHhCC----CCcCCEEEE
Confidence 5667777764 89876655542 1 3566777776553 4555555 578898854
No 146
>PRK14287 chaperone protein DnaJ; Provisional
Probab=81.05 E-value=1.4 Score=44.74 Aligned_cols=64 Identities=27% Similarity=0.594 Sum_probs=41.7
Q ss_pred cHHHHhcCCCCc---ccccccccCCccc------eeeCCCCCCCceeeecCC------CccccCCccccCccc---cCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDAR------FVPCSHCCGSRKVFDEED------GQLRRCTNCNENGLI---RCPA 362 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~r------fvpC~~C~GS~Kv~~e~~------~~~~rC~~CNENGLi---rCp~ 362 (366)
.|++++.+.... .....|..|.|.+ -..|..|+|+-.+..... .....|+.|+-.|.+ +|+.
T Consensus 121 slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~ 200 (371)
T PRK14287 121 EFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCAT 200 (371)
T ss_pred EHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCC
Confidence 456666554331 1245788888776 467999999977643211 013589999999976 5766
Q ss_pred CC
Q 017790 363 CS 364 (366)
Q Consensus 363 C~ 364 (366)
|.
T Consensus 201 C~ 202 (371)
T PRK14287 201 CG 202 (371)
T ss_pred CC
Confidence 64
No 147
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=80.99 E-value=16 Score=28.45 Aligned_cols=61 Identities=18% Similarity=0.253 Sum_probs=44.5
Q ss_pred CCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHHh
Q 017790 226 RGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNE 298 (366)
Q Consensus 226 ~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~E 298 (366)
-|+..-.++|-++..+|+-.|++|+..... +.. ......+|.|..+|+.|+|.+.+++..+
T Consensus 10 ~g~ps~sp~clk~~~~Lr~~~~~~~v~~~~-n~~-----------~sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 10 WGLPSVDPECLAVLAYLKFAGAPLKVVPSN-NPW-----------RSPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred CCCCcCCHHHHHHHHHHHcCCCCEEEEecC-CCC-----------CCCCCccCEEEECCEEecChHHHHHHHH
Confidence 344444578999999999999999665332 211 1113579999999999999999888554
No 148
>PRK14280 chaperone protein DnaJ; Provisional
Probab=80.91 E-value=1.3 Score=44.89 Aligned_cols=64 Identities=28% Similarity=0.617 Sum_probs=40.7
Q ss_pred cHHHHhcCCCCc---ccccccccCCccc------eeeCCCCCCCceeeecCC------CccccCCccccCccc---cCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDAR------FVPCSHCCGSRKVFDEED------GQLRRCTNCNENGLI---RCPA 362 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~r------fvpC~~C~GS~Kv~~e~~------~~~~rC~~CNENGLi---rCp~ 362 (366)
.|++++.+.... .....|..|.|.+ ...|..|+|+-.+..... .....|+.|+-.|.+ +|+.
T Consensus 126 tLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 205 (376)
T PRK14280 126 TFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPT 205 (376)
T ss_pred EHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCC
Confidence 466666654432 1245788888876 467999999876543210 023589999888865 4666
Q ss_pred CC
Q 017790 363 CS 364 (366)
Q Consensus 363 C~ 364 (366)
|.
T Consensus 206 C~ 207 (376)
T PRK14280 206 CH 207 (376)
T ss_pred CC
Confidence 63
No 149
>PRK14282 chaperone protein DnaJ; Provisional
Probab=80.79 E-value=1.3 Score=44.71 Aligned_cols=38 Identities=29% Similarity=0.765 Sum_probs=30.0
Q ss_pred cccccCCcccee---------------eCCCCCCCceeeecCCCccccCCccccCcccc
Q 017790 316 SVCESCGDARFV---------------PCSHCCGSRKVFDEEDGQLRRCTNCNENGLIR 359 (366)
Q Consensus 316 ~~C~~CGg~rfv---------------pC~~C~GS~Kv~~e~~~~~~rC~~CNENGLir 359 (366)
..|..|+|.+.+ +|..|+|.-++.. .+|..|+..|.+.
T Consensus 170 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 222 (369)
T PRK14282 170 VTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG------EYCHECGGSGRIR 222 (369)
T ss_pred cCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC------CCCCCCCCceeEE
Confidence 579999998764 6999999987742 3699999888654
No 150
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=80.71 E-value=8.1 Score=30.77 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=32.3
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHH----HhC--CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe--CC
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIF----KSY--RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI--RG 284 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL----~~~--gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV--dG 284 (366)
||.|+++||+ .|.++...| +.+ ++.+..+|.+.+. ++.+.++ ...+|.+++ +|
T Consensus 23 ~v~f~a~wC~------~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~----i~~~Pt~~~~~~g 83 (104)
T cd03004 23 LVDFYAPWCG------PCQALLPELRKAARALKGKVKVGSVDCQKYE----SLCQQAN----IRAYPTIRLYPGN 83 (104)
T ss_pred EEEEECCCCH------HHHHHHHHHHHHHHHhcCCcEEEEEECCchH----HHHHHcC----CCcccEEEEEcCC
Confidence 5667777664 888654444 343 3667788876543 4545454 567887743 55
No 151
>PLN02378 glutathione S-transferase DHAR1
Probab=80.47 E-value=5.4 Score=36.53 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=44.9
Q ss_pred CCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHHh
Q 017790 231 TYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNE 298 (366)
Q Consensus 231 T~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~E 298 (366)
++++|.+|+-+|+.+|++|+.+.|+.... -+++.+. ....+||.+-.+|..|.-...+....+
T Consensus 19 ~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~i----nP~G~VPvL~~~~~~l~ES~aI~~YL~ 81 (213)
T PLN02378 19 DCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDI----SPQGKVPVLKIDDKWVTDSDVIVGILE 81 (213)
T ss_pred CCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHh----CCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 46799999999999999999888765421 1234432 235789999888877776666655443
No 152
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=80.33 E-value=9.2 Score=29.80 Aligned_cols=56 Identities=14% Similarity=0.299 Sum_probs=33.0
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHh------CCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEE--EeCCEEE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKS------YRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQV--FIRGKHI 287 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~------~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqV--FVdG~~I 287 (366)
||.|++++| ..|.+++..|+. ..+.+...|++.. .++.+.++ ...+|.+ |.+|+.+
T Consensus 18 ~v~f~~~~C------~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~----~~~~~~~~----i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWA------EPCKQMNQVFEELAKEAFPSVLFLSIEAEEL----PEISEKFE----ITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCC------HHHHHHhHHHHHHHHHhCCceEEEEEccccC----HHHHHhcC----CccccEEEEEECCEEE
Confidence 455666655 489987776654 2355666666533 34555555 4678865 4577543
No 153
>PLN02395 glutathione S-transferase
Probab=80.29 E-value=7 Score=35.16 Aligned_cols=70 Identities=10% Similarity=0.061 Sum_probs=48.6
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCH-H-HHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHH
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDS-S-YRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQ 295 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~-e-~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~ 295 (366)
+.||... ...+.+|+-+|..+|++|+.+.|+... + ...++.+.. ...+||.+..+|..|-....+.+
T Consensus 3 ~~ly~~~-------~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~n----P~g~vP~L~~~~~~l~ES~aI~~ 71 (215)
T PLN02395 3 LKVYGPA-------FASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQ----PFGVVPVIVDGDYKIFESRAIMR 71 (215)
T ss_pred EEEEcCC-------cCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhC----CCCCCCEEEECCEEEEcHHHHHH
Confidence 5788631 235789999999999999998886532 1 124555532 25689999988887777777766
Q ss_pred HHh
Q 017790 296 LNE 298 (366)
Q Consensus 296 L~E 298 (366)
+.+
T Consensus 72 YL~ 74 (215)
T PLN02395 72 YYA 74 (215)
T ss_pred HHH
Confidence 444
No 154
>PRK10767 chaperone protein DnaJ; Provisional
Probab=80.14 E-value=1.5 Score=44.37 Aligned_cols=37 Identities=30% Similarity=0.823 Sum_probs=29.1
Q ss_pred cccccCCcccee-----------eCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 316 SVCESCGDARFV-----------PCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 316 ~~C~~CGg~rfv-----------pC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
..|..|+|.+.+ +|..|+|.-++.. .+|..|+-.|.+
T Consensus 160 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 207 (371)
T PRK10767 160 KTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK------DPCKKCHGQGRV 207 (371)
T ss_pred ccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC------CCCCCCCCCceE
Confidence 479999998765 5999999987642 369999988865
No 155
>PRK14279 chaperone protein DnaJ; Provisional
Probab=80.02 E-value=1.4 Score=45.12 Aligned_cols=58 Identities=26% Similarity=0.555 Sum_probs=35.4
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce------eeCCCCCCCceeeecCC--CccccCCccccCccc
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF------VPCSHCCGSRKVFDEED--GQLRRCTNCNENGLI 358 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf------vpC~~C~GS~Kv~~e~~--~~~~rC~~CNENGLi 358 (366)
.|++++.+.... .....|..|.|.+. ..|..|+|+-.+..... .....|+.|+-.|.+
T Consensus 156 tLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~ 224 (392)
T PRK14279 156 DFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSI 224 (392)
T ss_pred EHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEE
Confidence 466666554332 12457888888775 56888888876543221 124578888877754
No 156
>PRK14276 chaperone protein DnaJ; Provisional
Probab=79.95 E-value=1.4 Score=44.90 Aligned_cols=63 Identities=24% Similarity=0.553 Sum_probs=39.3
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce------eeCCCCCCCceeeecCC------CccccCCccccCccc---cCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF------VPCSHCCGSRKVFDEED------GQLRRCTNCNENGLI---RCPA 362 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf------vpC~~C~GS~Kv~~e~~------~~~~rC~~CNENGLi---rCp~ 362 (366)
.|++++.+.... .....|..|.|.+. ..|..|+|+-.+..... .....|+.|+-.|-+ +|+.
T Consensus 129 tLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~ 208 (380)
T PRK14276 129 DFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQT 208 (380)
T ss_pred EHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCC
Confidence 466666554331 13457888888774 57999999876532210 013588888888855 4666
Q ss_pred C
Q 017790 363 C 363 (366)
Q Consensus 363 C 363 (366)
|
T Consensus 209 C 209 (380)
T PRK14276 209 C 209 (380)
T ss_pred C
Confidence 5
No 157
>PRK14301 chaperone protein DnaJ; Provisional
Probab=79.81 E-value=1.4 Score=44.72 Aligned_cols=63 Identities=29% Similarity=0.643 Sum_probs=38.8
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce------eeCCCCCCCceeeecCC--CccccCCccccCccc---cCCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF------VPCSHCCGSRKVFDEED--GQLRRCTNCNENGLI---RCPAC 363 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf------vpC~~C~GS~Kv~~e~~--~~~~rC~~CNENGLi---rCp~C 363 (366)
.|++++.+.... .....|..|.|.+. ..|..|+|+-.+....+ .....|+.|+-.|-+ +|+.|
T Consensus 127 tLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 203 (373)
T PRK14301 127 SFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKC 203 (373)
T ss_pred cHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCC
Confidence 466666554432 12457888888764 56888888876543221 014578888888754 56665
No 158
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.79 E-value=3.5 Score=39.15 Aligned_cols=73 Identities=16% Similarity=0.314 Sum_probs=48.4
Q ss_pred CcEEEEEeCCCCCCCCCchHH-HHHHHHHhCCCcEEEEEccCCH---HHHHHHHHHHcCCCCCCcccEEEeCCEEEccch
Q 017790 216 NKIVIYFTSLRGIRRTYEDCC-SVRMIFKSYRVGVDERDISMDS---SYRKELQDLLGVEGKAITLPQVFIRGKHIGGAE 291 (366)
Q Consensus 216 ~kVVVYTTSL~gIRKT~~dC~-raK~IL~~~gV~ydErDVsmD~---e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaD 291 (366)
.|-++|. -|+. -|. |||-.|.-+||+|+.+-|+.=. ++-.|+++. ....+||.+.|||..|-..-
T Consensus 4 ~KpiLYS-YWrS------SCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~i----NPm~kVP~L~i~g~tl~eS~ 72 (217)
T KOG0868|consen 4 AKPILYS-YWRS------SCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEI----NPMEKVPTLVIDGLTLTESL 72 (217)
T ss_pred ccchhhh-hhcc------cchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhc----CchhhCCeEEECCEEeehHH
Confidence 3556663 3432 354 8999999999999888776422 223355443 33579999999999987766
Q ss_pred HHHHHHhc
Q 017790 292 EIKQLNET 299 (366)
Q Consensus 292 Ev~~L~Es 299 (366)
.+..+.|+
T Consensus 73 AII~YLeE 80 (217)
T KOG0868|consen 73 AIIEYLEE 80 (217)
T ss_pred HHHHHHHh
Confidence 66654443
No 159
>PRK14277 chaperone protein DnaJ; Provisional
Probab=79.71 E-value=1.5 Score=44.64 Aligned_cols=63 Identities=24% Similarity=0.568 Sum_probs=38.1
Q ss_pred cHHHHhcCCCCc---ccccccccCCccc------eeeCCCCCCCceeeecCC------CccccCCccccCcccc---CCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDAR------FVPCSHCCGSRKVFDEED------GQLRRCTNCNENGLIR---CPA 362 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~r------fvpC~~C~GS~Kv~~e~~------~~~~rC~~CNENGLir---Cp~ 362 (366)
.|++++.+.... .....|..|.|.+ ...|..|+|+-.+..... .....|+.|+-.|.+. |+.
T Consensus 138 tLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~ 217 (386)
T PRK14277 138 TFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNK 217 (386)
T ss_pred EHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCC
Confidence 566776654432 1235677777765 467888988876532210 0135788888888653 555
Q ss_pred C
Q 017790 363 C 363 (366)
Q Consensus 363 C 363 (366)
|
T Consensus 218 C 218 (386)
T PRK14277 218 C 218 (386)
T ss_pred C
Confidence 5
No 160
>PRK14297 chaperone protein DnaJ; Provisional
Probab=79.69 E-value=1.5 Score=44.47 Aligned_cols=64 Identities=19% Similarity=0.485 Sum_probs=40.5
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce------eeCCCCCCCceeeecC------CCccccCCccccCccc---cCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF------VPCSHCCGSRKVFDEE------DGQLRRCTNCNENGLI---RCPA 362 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf------vpC~~C~GS~Kv~~e~------~~~~~rC~~CNENGLi---rCp~ 362 (366)
.|++++.+..+. .....|..|.|.+. ..|..|+|.-++.... .....+|+.|+-.|.+ +|+.
T Consensus 131 sLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~ 210 (380)
T PRK14297 131 TFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNK 210 (380)
T ss_pred EHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCC
Confidence 466666554332 12457888888774 5799999997654221 0124589999888865 5666
Q ss_pred CC
Q 017790 363 CS 364 (366)
Q Consensus 363 C~ 364 (366)
|.
T Consensus 211 C~ 212 (380)
T PRK14297 211 CH 212 (380)
T ss_pred CC
Confidence 63
No 161
>PRK14288 chaperone protein DnaJ; Provisional
Probab=79.63 E-value=1.7 Score=44.15 Aligned_cols=63 Identities=30% Similarity=0.608 Sum_probs=37.7
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce-----eeCCCCCCCceeeecCCC--ccccCCccccCccc---cCCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF-----VPCSHCCGSRKVFDEEDG--QLRRCTNCNENGLI---RCPAC 363 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf-----vpC~~C~GS~Kv~~e~~~--~~~rC~~CNENGLi---rCp~C 363 (366)
.|+++..+.... .....|..|.|.+. ..|..|+|+-.+....+. ....|+.|+-.|.+ +|+.|
T Consensus 123 slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 198 (369)
T PRK14288 123 SFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQAC 198 (369)
T ss_pred cHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccC
Confidence 456666554331 12347888888764 568888888765433211 13478888888854 45555
No 162
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=79.34 E-value=3.9 Score=42.74 Aligned_cols=61 Identities=16% Similarity=0.276 Sum_probs=40.3
Q ss_pred CCCcEEEEEeCCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEc
Q 017790 214 SNNKIVIYFTSLRGIRRTYEDCCSVRMIFKSY-----RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIG 288 (366)
Q Consensus 214 ~~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~-----gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IG 288 (366)
+.-.|.+|.|..| ++|-.|.++++.+ +|..+.+|.... .++.+..+ ...||++||+|+.++
T Consensus 117 ~~~~i~~f~~~~C------p~Cp~~v~~~~~~a~~~p~i~~~~id~~~~----~~~~~~~~----v~~VP~~~i~~~~~~ 182 (515)
T TIGR03140 117 GPLHFETYVSLTC------QNCPDVVQALNQMALLNPNISHTMIDGALF----QDEVEALG----IQGVPAVFLNGEEFH 182 (515)
T ss_pred CCeEEEEEEeCCC------CCCHHHHHHHHHHHHhCCCceEEEEEchhC----HHHHHhcC----CcccCEEEECCcEEE
Confidence 3446889988755 5888877777655 355566665433 33434343 468999999997664
No 163
>PRK14286 chaperone protein DnaJ; Provisional
Probab=78.95 E-value=1.7 Score=44.22 Aligned_cols=63 Identities=21% Similarity=0.504 Sum_probs=39.1
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce------eeCCCCCCCceeeecCCC--ccccCCccccCccc---cCCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF------VPCSHCCGSRKVFDEEDG--QLRRCTNCNENGLI---RCPAC 363 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf------vpC~~C~GS~Kv~~e~~~--~~~rC~~CNENGLi---rCp~C 363 (366)
.|++++.+.... .....|..|.|.+. ..|..|+|+-.+....+. ....|+.|+--|.+ +|+.|
T Consensus 133 tLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 209 (372)
T PRK14286 133 SLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTC 209 (372)
T ss_pred EHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCC
Confidence 466666654432 12457888888775 678888888765432110 13478888877754 45555
No 164
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=78.85 E-value=1.4 Score=30.73 Aligned_cols=29 Identities=28% Similarity=0.748 Sum_probs=21.7
Q ss_pred eeeCCCCCCCceeeec---CCCccccCCcccc
Q 017790 326 FVPCSHCCGSRKVFDE---EDGQLRRCTNCNE 354 (366)
Q Consensus 326 fvpC~~C~GS~Kv~~e---~~~~~~rC~~CNE 354 (366)
.+-|+.|+...++-.+ ..++.+||+.|.+
T Consensus 2 ~i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~ 33 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDKLPAGGRKVRCPKCGH 33 (37)
T ss_pred EEECCCCCceEEcCHHHcccCCcEEECCCCCc
Confidence 3679999999887544 2356789999975
No 165
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=78.22 E-value=8.4 Score=30.13 Aligned_cols=56 Identities=13% Similarity=0.364 Sum_probs=33.5
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHH----hC--CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe--CCEEE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFK----SY--RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI--RGKHI 287 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~----~~--gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV--dG~~I 287 (366)
||.|+++||+ .|.++...|+ .+ ++.+..+|++.+. +|.+.++ ...+|.+++ +|+.+
T Consensus 16 lv~f~a~wC~------~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~l~~~~~----i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 16 VVDFWAPRSP------PSKELLPLLERLAEEYQGQFVLAKVNCDAQP----QIAQQFG----VQALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEECCCCh------HHHHHHHHHHHHHHHhCCcEEEEEEeccCCH----HHHHHcC----CCCCCEEEEEeCCEEe
Confidence 4556666664 8997655554 33 2445666766543 4555555 467898864 66543
No 166
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=78.13 E-value=4.9 Score=42.00 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=40.2
Q ss_pred CCcEEEEEeCCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEc
Q 017790 215 NNKIVIYFTSLRGIRRTYEDCCSVRMIFKSY-----RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIG 288 (366)
Q Consensus 215 ~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~-----gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IG 288 (366)
.-.|.+|.|..| ++|-+|..+++.+ .|..+.+|....+ ++.+..+ ...||++||+|+.+.
T Consensus 117 ~~~i~~fv~~~C------p~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~----~~~~~~~----v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 117 DFHFETYVSLSC------HNCPDVVQALNLMAVLNPNITHTMIDGALFQ----DEVEARN----IMAVPTVFLNGEEFG 181 (517)
T ss_pred CeEEEEEEcCCC------CCcHHHHHHHHHHHHhCCCceEEEEEchhCH----hHHHhcC----CcccCEEEECCcEEE
Confidence 345889987755 5888877766654 3556666665433 4444443 468999999997654
No 167
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=78.10 E-value=2.5 Score=42.31 Aligned_cols=64 Identities=23% Similarity=0.559 Sum_probs=40.4
Q ss_pred cHHHHhcCCCCc---ccccccccCCccc------eeeCCCCCCCceeeecCC------CccccCCccccCccc---cCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDAR------FVPCSHCCGSRKVFDEED------GQLRRCTNCNENGLI---RCPA 362 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~r------fvpC~~C~GS~Kv~~e~~------~~~~rC~~CNENGLi---rCp~ 362 (366)
.|+++..+.... .....|..|.|.+ ...|..|+|.-.+..... .....|+.|+-.|.+ +|+.
T Consensus 126 sLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 205 (354)
T TIGR02349 126 TFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCST 205 (354)
T ss_pred EHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCC
Confidence 466666554332 1245788888877 467999999876543211 013588888888865 4666
Q ss_pred CC
Q 017790 363 CS 364 (366)
Q Consensus 363 C~ 364 (366)
|.
T Consensus 206 C~ 207 (354)
T TIGR02349 206 CK 207 (354)
T ss_pred CC
Confidence 63
No 168
>PRK14284 chaperone protein DnaJ; Provisional
Probab=78.10 E-value=1.7 Score=44.41 Aligned_cols=64 Identities=22% Similarity=0.588 Sum_probs=40.1
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce------eeCCCCCCCceeeecCC--CccccCCccccCccc---cCCCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF------VPCSHCCGSRKVFDEED--GQLRRCTNCNENGLI---RCPACS 364 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf------vpC~~C~GS~Kv~~e~~--~~~~rC~~CNENGLi---rCp~C~ 364 (366)
.|+++..+..+. .....|..|.|.+. ..|..|+|+-.+...-+ .....|+.|+-.|-+ +|+.|.
T Consensus 141 slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 218 (391)
T PRK14284 141 SFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCR 218 (391)
T ss_pred EHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCC
Confidence 355666554432 12457888877764 56999999976643211 123589999888865 466663
No 169
>PRK14284 chaperone protein DnaJ; Provisional
Probab=78.05 E-value=2.6 Score=43.05 Aligned_cols=37 Identities=30% Similarity=0.802 Sum_probs=26.5
Q ss_pred cccccCCccce-----------eeCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 316 SVCESCGDARF-----------VPCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 316 ~~C~~CGg~rf-----------vpC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
..|..|+|.+. .+|..|+|.-++.. ..|..|+-.|.+
T Consensus 176 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 223 (391)
T PRK14284 176 KVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT------DPCSVCRGQGRI 223 (391)
T ss_pred eecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC------CcCCCCCCccee
Confidence 46888888876 47888888866542 358888877765
No 170
>PRK10996 thioredoxin 2; Provisional
Probab=78.03 E-value=9.5 Score=33.03 Aligned_cols=56 Identities=18% Similarity=0.427 Sum_probs=33.3
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHh----C--CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe--CCEEE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKS----Y--RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI--RGKHI 287 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~----~--gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV--dG~~I 287 (366)
||.|+++||+ .|.+...+|.. + ++.+..+|++.+. ++.+.++ ...+|.+++ +|+.+
T Consensus 56 vv~F~a~wC~------~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~----~l~~~~~----V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCG------PCRNFAPIFEDVAAERSGKVRFVKVNTEAER----ELSARFR----IRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCH------HHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH----HHHHhcC----CCccCEEEEEECCEEE
Confidence 5566666654 89976554433 2 3556667776543 4555554 467787654 77654
No 171
>PRK14296 chaperone protein DnaJ; Provisional
Probab=77.79 E-value=2.4 Score=43.17 Aligned_cols=37 Identities=30% Similarity=0.846 Sum_probs=28.3
Q ss_pred cccccCCcccee---------------eCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 316 SVCESCGDARFV---------------PCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 316 ~~C~~CGg~rfv---------------pC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
..|..|+|.+.+ +|..|+|.-++.. .+|+.|+-.|.+
T Consensus 167 ~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 218 (372)
T PRK14296 167 HICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK------NKCKNCKGKGKY 218 (372)
T ss_pred ccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec------ccccCCCCceEE
Confidence 468999888754 7999999887752 358999887765
No 172
>PRK14286 chaperone protein DnaJ; Provisional
Probab=77.71 E-value=2.4 Score=43.10 Aligned_cols=38 Identities=29% Similarity=0.841 Sum_probs=28.8
Q ss_pred cccccCCcccee-----------eCCCCCCCceeeecCCCccccCCccccCcccc
Q 017790 316 SVCESCGDARFV-----------PCSHCCGSRKVFDEEDGQLRRCTNCNENGLIR 359 (366)
Q Consensus 316 ~~C~~CGg~rfv-----------pC~~C~GS~Kv~~e~~~~~~rC~~CNENGLir 359 (366)
..|..|.|.+.+ +|..|+|.-++.. .+|..|+-.|.++
T Consensus 168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~~~ 216 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS------NPCKTCGGQGLQE 216 (372)
T ss_pred ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec------ccCCCCCCCcEEe
Confidence 578888888754 6999998877752 2688888887764
No 173
>PRK14295 chaperone protein DnaJ; Provisional
Probab=77.69 E-value=1.9 Score=44.07 Aligned_cols=63 Identities=25% Similarity=0.646 Sum_probs=38.7
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce------eeCCCCCCCceeeecCCC--ccccCCccccCccc---cCCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF------VPCSHCCGSRKVFDEEDG--QLRRCTNCNENGLI---RCPAC 363 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf------vpC~~C~GS~Kv~~e~~~--~~~rC~~CNENGLi---rCp~C 363 (366)
.|+++..+.... .....|..|.|.+. ..|..|+|+-.+...... ...+|+.|+-.|.+ +|+.|
T Consensus 149 sLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 225 (389)
T PRK14295 149 SFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVC 225 (389)
T ss_pred EHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCC
Confidence 466666554332 12456888877664 678888888765433211 24588888888865 46655
No 174
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=77.47 E-value=1.7 Score=40.73 Aligned_cols=26 Identities=19% Similarity=0.680 Sum_probs=22.0
Q ss_pred ccccccCCccceee-----CCCCCCCceeee
Q 017790 315 VSVCESCGDARFVP-----CSHCCGSRKVFD 340 (366)
Q Consensus 315 ~~~C~~CGg~rfvp-----C~~C~GS~Kv~~ 340 (366)
...|..|+|.++++ |..|+|+-++-.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRP 129 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence 46899999999975 999999988643
No 175
>PRK14281 chaperone protein DnaJ; Provisional
Probab=77.41 E-value=2 Score=43.94 Aligned_cols=63 Identities=29% Similarity=0.681 Sum_probs=39.6
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce-----eeCCCCCCCceeeecCC------CccccCCccccCccc---cCCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF-----VPCSHCCGSRKVFDEED------GQLRRCTNCNENGLI---RCPAC 363 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf-----vpC~~C~GS~Kv~~e~~------~~~~rC~~CNENGLi---rCp~C 363 (366)
.|++++.+.... .....|..|.|.+. ..|..|+|+-.+..... .....|+.|+-.|.+ +|+.|
T Consensus 146 tLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 225 (397)
T PRK14281 146 TLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPAC 225 (397)
T ss_pred EHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCC
Confidence 466776654432 12456888877664 56999999976543210 013579999888865 46666
No 176
>PRK14278 chaperone protein DnaJ; Provisional
Probab=77.38 E-value=2 Score=43.71 Aligned_cols=64 Identities=25% Similarity=0.561 Sum_probs=38.9
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce------eeCCCCCCCceeeecC--C----CccccCCccccCccc---cCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF------VPCSHCCGSRKVFDEE--D----GQLRRCTNCNENGLI---RCPA 362 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf------vpC~~C~GS~Kv~~e~--~----~~~~rC~~CNENGLi---rCp~ 362 (366)
.|+++..+.... .....|..|.|.+. ..|..|+|+-.+.... . .....|+.|+-.|-+ +|+.
T Consensus 122 tLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 201 (378)
T PRK14278 122 DLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHE 201 (378)
T ss_pred EHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCC
Confidence 466666554332 12457888888763 5799999987653221 0 013578888888854 4666
Q ss_pred CC
Q 017790 363 CS 364 (366)
Q Consensus 363 C~ 364 (366)
|.
T Consensus 202 C~ 203 (378)
T PRK14278 202 CA 203 (378)
T ss_pred CC
Confidence 63
No 177
>PRK14300 chaperone protein DnaJ; Provisional
Probab=76.95 E-value=2 Score=43.52 Aligned_cols=37 Identities=22% Similarity=0.763 Sum_probs=26.3
Q ss_pred cccccCCcccee-----------eCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 316 SVCESCGDARFV-----------PCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 316 ~~C~~CGg~rfv-----------pC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
..|..|.|.+++ +|..|+|.-++.. .+|..|+-.|.+
T Consensus 163 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 210 (372)
T PRK14300 163 TTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK------NPCKKCHGMGRY 210 (372)
T ss_pred ccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC------CCCCCCCCceEE
Confidence 468888888765 6888888866642 358888877765
No 178
>PRK14280 chaperone protein DnaJ; Provisional
Probab=76.88 E-value=2.9 Score=42.45 Aligned_cols=38 Identities=29% Similarity=0.881 Sum_probs=29.2
Q ss_pred ccccccCCcccee---------------eCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 315 VSVCESCGDARFV---------------PCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 315 ~~~C~~CGg~rfv---------------pC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
...|..|+|.+.+ +|..|+|.-++.. .+|..|+-.|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 212 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK------EKCPTCHGKGKV 212 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec------CCCCCCCCceEE
Confidence 3579999988653 7999999977652 369999988865
No 179
>PRK14298 chaperone protein DnaJ; Provisional
Probab=76.79 E-value=2 Score=43.74 Aligned_cols=64 Identities=23% Similarity=0.556 Sum_probs=41.5
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce------eeCCCCCCCceeeecCC------CccccCCccccCccc---cCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF------VPCSHCCGSRKVFDEED------GQLRRCTNCNENGLI---RCPA 362 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf------vpC~~C~GS~Kv~~e~~------~~~~rC~~CNENGLi---rCp~ 362 (366)
.|++++.+.... .....|..|.|.+. ..|..|+|+-.+..... -....|+.|+-.|-+ +|+.
T Consensus 124 slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 203 (377)
T PRK14298 124 TLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPV 203 (377)
T ss_pred EHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCC
Confidence 466666554432 12457889988775 67999999976643210 124589999988854 5666
Q ss_pred CC
Q 017790 363 CS 364 (366)
Q Consensus 363 C~ 364 (366)
|.
T Consensus 204 C~ 205 (377)
T PRK14298 204 CS 205 (377)
T ss_pred CC
Confidence 63
No 180
>PRK14294 chaperone protein DnaJ; Provisional
Probab=76.74 E-value=2.1 Score=43.32 Aligned_cols=63 Identities=22% Similarity=0.512 Sum_probs=38.8
Q ss_pred cHHHHhcCCCCc---ccccccccCCccce------eeCCCCCCCceeeecCCC--ccccCCccccCccc---cCCCC
Q 017790 301 DLAMLLKGFPVV---NAVSVCESCGDARF------VPCSHCCGSRKVFDEEDG--QLRRCTNCNENGLI---RCPAC 363 (366)
Q Consensus 301 eL~kLL~~~~~~---~~~~~C~~CGg~rf------vpC~~C~GS~Kv~~e~~~--~~~rC~~CNENGLi---rCp~C 363 (366)
.|+++..+.... .....|..|.|.+. ..|..|+|.-.+....+. ....|+.|+-.|-+ +|+.|
T Consensus 127 slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 203 (366)
T PRK14294 127 PFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTC 203 (366)
T ss_pred eHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCC
Confidence 455555443321 12457888888765 579999998765432110 24588888888865 46655
No 181
>PRK14279 chaperone protein DnaJ; Provisional
Probab=76.28 E-value=2.7 Score=43.07 Aligned_cols=39 Identities=26% Similarity=0.893 Sum_probs=30.2
Q ss_pred ccccccCCcccee-----------eCCCCCCCceeeecCCCccccCCccccCcccc
Q 017790 315 VSVCESCGDARFV-----------PCSHCCGSRKVFDEEDGQLRRCTNCNENGLIR 359 (366)
Q Consensus 315 ~~~C~~CGg~rfv-----------pC~~C~GS~Kv~~e~~~~~~rC~~CNENGLir 359 (366)
...|..|.|.+.+ +|..|+|.-++.. .+|..|+-.|.++
T Consensus 190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------~~C~~C~G~g~v~ 239 (392)
T PRK14279 190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------DPCEECKGTGVTT 239 (392)
T ss_pred CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------CcCCCCCCCeEEE
Confidence 3579999998764 7999999988752 3699998888763
No 182
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=76.27 E-value=2.3 Score=42.53 Aligned_cols=39 Identities=26% Similarity=0.810 Sum_probs=29.5
Q ss_pred ccccccCCccce---------------eeCCCCCCCceeeecCCCccccCCccccCcccc
Q 017790 315 VSVCESCGDARF---------------VPCSHCCGSRKVFDEEDGQLRRCTNCNENGLIR 359 (366)
Q Consensus 315 ~~~C~~CGg~rf---------------vpC~~C~GS~Kv~~e~~~~~~rC~~CNENGLir 359 (366)
...|..|+|.+. .+|..|+|.-++.. ..|..|+-.|.++
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 213 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK------EPCSTCKGKGRVK 213 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC------CCCCCCCCCcEec
Confidence 356999999764 47999999987652 2599999888764
No 183
>PRK14288 chaperone protein DnaJ; Provisional
Probab=75.88 E-value=2.7 Score=42.71 Aligned_cols=38 Identities=26% Similarity=0.751 Sum_probs=29.1
Q ss_pred ccccccCCcccee-----------eCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 315 VSVCESCGDARFV-----------PCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 315 ~~~C~~CGg~rfv-----------pC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
...|..|+|.+.+ +|..|+|.-++.. ..|..|+-.|.+
T Consensus 156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 204 (369)
T PRK14288 156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK------TPCQACKGKTYI 204 (369)
T ss_pred CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc------ccCccCCCcceE
Confidence 3579999998864 5999999987652 259999888765
No 184
>PRK14290 chaperone protein DnaJ; Provisional
Probab=75.84 E-value=2.4 Score=42.87 Aligned_cols=37 Identities=24% Similarity=0.734 Sum_probs=28.5
Q ss_pred cccccCCccce---------------eeCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 316 SVCESCGDARF---------------VPCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 316 ~~C~~CGg~rf---------------vpC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
..|..|+|.+. .+|..|+|.-++. ..+|..|+-.|.+
T Consensus 166 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~------~~~C~~C~G~g~v 217 (365)
T PRK14290 166 ITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP------EEKCPRCNGTGTV 217 (365)
T ss_pred ccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc------cCCCCCCCCceeE
Confidence 46999998874 4799999987763 2379999888765
No 185
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=75.78 E-value=8.8 Score=30.38 Aligned_cols=52 Identities=12% Similarity=0.324 Sum_probs=33.2
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHh-------CCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKS-------YRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~-------~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV 282 (366)
-+|.|+++||+ .|.++..+|+. .+|.+..+|++.+. ++.+.++ ...+|.+++
T Consensus 19 ~lv~f~a~wC~------~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~----~~~~~~~----i~~~Pt~~~ 77 (101)
T cd02994 19 WMIEFYAPWCP------ACQQLQPEWEEFADWSDDLGINVAKVDVTQEP----GLSGRFF----VTALPTIYH 77 (101)
T ss_pred EEEEEECCCCH------HHHHHhHHHHHHHHhhccCCeEEEEEEccCCH----hHHHHcC----CcccCEEEE
Confidence 47777777765 89876655542 34667778876554 3444444 567888865
No 186
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=75.59 E-value=5.4 Score=33.73 Aligned_cols=54 Identities=9% Similarity=0.226 Sum_probs=31.3
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHh------CCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKS------YRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~------~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV 282 (366)
+|.|+++||+ +|......+.. ....|..+||+.+.+. +.+.++ .. ...+|.+++
T Consensus 23 lV~F~a~WC~------~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~---~~~~~~-~~-g~~vPt~~f 82 (117)
T cd02959 23 MLLIHKTWCG------ACKALKPKFAESKEISELSHNFVMVNLEDDEEP---KDEEFS-PD-GGYIPRILF 82 (117)
T ss_pred EEEEeCCcCH------HHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCc---hhhhcc-cC-CCccceEEE
Confidence 4556677765 99976655554 3456888888765432 222333 11 124888754
No 187
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=75.55 E-value=14 Score=29.55 Aligned_cols=56 Identities=14% Similarity=0.228 Sum_probs=41.4
Q ss_pred CchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHHh
Q 017790 232 YEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNE 298 (366)
Q Consensus 232 ~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~E 298 (366)
...|.++..+|+..|++|+.+++.... . .. ....||.|-+||+.|++..-+..+..
T Consensus 17 ~~~~~kv~~~L~elglpye~~~~~~~~-~-------~~---P~GkVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 17 NASCLAVQTFLKMCNLPFNVRCRANAE-F-------MS---PSGKVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCCHHHHHHHHHHcCCCcEEEecCCcc-c-------cC---CCCcccEEEECCEEEeCHHHHHHHHh
Confidence 357889999999999999888653210 0 11 13579999999999999888776543
No 188
>PRK14301 chaperone protein DnaJ; Provisional
Probab=75.14 E-value=3.2 Score=42.22 Aligned_cols=37 Identities=32% Similarity=0.970 Sum_probs=29.5
Q ss_pred cccccCCccce-----------eeCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 316 SVCESCGDARF-----------VPCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 316 ~~C~~CGg~rf-----------vpC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
..|..|.|.+. .+|..|+|.-++.. .+|+.|+-.|.+
T Consensus 162 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 209 (373)
T PRK14301 162 ETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT------HPCPKCKGSGIV 209 (373)
T ss_pred cccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC------CCCCCCCCCcee
Confidence 57999999875 47999999988752 369999988765
No 189
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=74.90 E-value=11 Score=30.42 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=31.3
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHH----hCC---CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEE--EeCCEE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFK----SYR---VGVDERDISMDSSYRKELQDLLGVEGKAITLPQV--FIRGKH 286 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~----~~g---V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqV--FVdG~~ 286 (366)
||.|+++||+ .|..+..+|+ .++ +.+..+|++ +. ++.+.++ ...+|.+ |-+|+.
T Consensus 21 vv~F~a~wC~------~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~----~~~~~~~----v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 21 VVDVYQEWCG------PCKAVVSLFKKIKNELGDDLLHFATAEAD-TI----DTLKRYR----GKCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEECCcCH------hHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH----HHHHHcC----CCcCcEEEEEECCEE
Confidence 5567777765 8986555443 443 456666665 22 3445554 4677855 447753
No 190
>PRK14276 chaperone protein DnaJ; Provisional
Probab=74.56 E-value=3.2 Score=42.29 Aligned_cols=37 Identities=27% Similarity=0.718 Sum_probs=28.1
Q ss_pred cccccCCccce---------------eeCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 316 SVCESCGDARF---------------VPCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 316 ~~C~~CGg~rf---------------vpC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
..|..|+|.+. .+|..|+|.-++.. .+|..|+-.|.+
T Consensus 164 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~~ 215 (380)
T PRK14276 164 VTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK------EPCQTCHGTGHE 215 (380)
T ss_pred ccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc------CCCCCCCCceEE
Confidence 47899998764 36999999877652 369999888765
No 191
>PRK14295 chaperone protein DnaJ; Provisional
Probab=74.49 E-value=3.2 Score=42.51 Aligned_cols=37 Identities=30% Similarity=0.748 Sum_probs=29.3
Q ss_pred cccccCCccce-----------eeCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 316 SVCESCGDARF-----------VPCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 316 ~~C~~CGg~rf-----------vpC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
..|..|+|.+. .+|..|+|.-++.. .+|..|+-.|.+
T Consensus 184 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~~ 231 (389)
T PRK14295 184 RVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------DPCLVCKGSGRA 231 (389)
T ss_pred cCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec------cCCCCCCCCceE
Confidence 57999998865 58999999988753 369999888865
No 192
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=74.46 E-value=15 Score=28.43 Aligned_cols=50 Identities=24% Similarity=0.458 Sum_probs=31.3
Q ss_pred CCCchHHHHHHHHH----hCC--CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe--CCEEE
Q 017790 230 RTYEDCCSVRMIFK----SYR--VGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI--RGKHI 287 (366)
Q Consensus 230 KT~~dC~raK~IL~----~~g--V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV--dG~~I 287 (366)
..|..|..++..|. .++ |.+-.+|.+.+ .++.+.++ ...+|.+++ +|+.+
T Consensus 27 ~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~----v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 27 PWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN----KELCKKYG----VKSVPTIIFFKNGKEV 84 (103)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS----HHHHHHTT----CSSSSEEEEEETTEEE
T ss_pred CCCCccccccceecccccccccccccchhhhhcc----chhhhccC----CCCCCEEEEEECCcEE
Confidence 34569997665553 344 77788888755 34555555 467888754 66544
No 193
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=74.36 E-value=12 Score=28.34 Aligned_cols=52 Identities=15% Similarity=0.322 Sum_probs=30.0
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHH----hC----CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFK----SY----RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~----~~----gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV 282 (366)
-+|+|++++| ..|.++...|+ .+ ++.+...|.+.+ .++.+.++ ...+|.+++
T Consensus 18 ~~v~f~~~~C------~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~----i~~~Pt~~~ 77 (101)
T cd02961 18 VLVEFYAPWC------GHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN----NDLCSEYG----VRGYPTIKL 77 (101)
T ss_pred EEEEEECCCC------HHHHhhhHHHHHHHHHhccCCceEEEEeeccch----HHHHHhCC----CCCCCEEEE
Confidence 3556665554 58987665553 33 345556665542 34555554 467898854
No 194
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=74.23 E-value=29 Score=26.68 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhCCCcEEEEEccCCH--HHHHHHHHHHcCCCCC-CcccEEEeC-CEEEccchHHHH
Q 017790 234 DCCSVRMIFKSYRVGVDERDISMDS--SYRKELQDLLGVEGKA-ITLPQVFIR-GKHIGGAEEIKQ 295 (366)
Q Consensus 234 dC~raK~IL~~~gV~ydErDVsmD~--e~reEL~elLg~~tg~-~TVPqVFVd-G~~IGGaDEv~~ 295 (366)
.+.+++.+|+..||+|+.+.++... ...+++.+... . ..+|.+-.+ |..|-..-.+.+
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p----~~g~vP~l~~~~~~~l~es~AI~~ 72 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINP----MFGKVPALEDGDGFVLTESNAILR 72 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTT----TSSSSSEEEETTTEEEESHHHHHH
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhccc----ccceeeEEEECCCCEEEcHHHHHH
Confidence 6789999999999999988776532 22366665543 3 689999999 888766655544
No 195
>PRK14289 chaperone protein DnaJ; Provisional
Probab=73.96 E-value=3.3 Score=42.16 Aligned_cols=38 Identities=26% Similarity=0.856 Sum_probs=28.6
Q ss_pred ccccccCCcccee---------------eCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 315 VSVCESCGDARFV---------------PCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 315 ~~~C~~CGg~rfv---------------pC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
...|..|.|.+.+ +|..|+|.-++. ..+|..|+-.|.+
T Consensus 171 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------~~~C~~C~G~g~v 223 (386)
T PRK14289 171 SETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII------KKKCKKCGGEGIV 223 (386)
T ss_pred CCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc------CcCCCCCCCCcEE
Confidence 4579999887664 799999986653 2469999888865
No 196
>PRK14277 chaperone protein DnaJ; Provisional
Probab=73.49 E-value=3.3 Score=42.23 Aligned_cols=38 Identities=29% Similarity=0.749 Sum_probs=30.4
Q ss_pred ccccccCCcccee---------------eCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 315 VSVCESCGDARFV---------------PCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 315 ~~~C~~CGg~rfv---------------pC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
...|..|+|.+.+ +|..|+|.-++.. .+|..|+-.|.+
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 224 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT------DPCNKCGGTGRI 224 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc------CCCCCCCCCcEE
Confidence 3579999999653 7999999988753 269999998876
No 197
>PRK14285 chaperone protein DnaJ; Provisional
Probab=73.42 E-value=3.7 Score=41.66 Aligned_cols=38 Identities=29% Similarity=0.883 Sum_probs=29.2
Q ss_pred cccccCCcccee-----------eCCCCCCCceeeecCCCccccCCccccCcccc
Q 017790 316 SVCESCGDARFV-----------PCSHCCGSRKVFDEEDGQLRRCTNCNENGLIR 359 (366)
Q Consensus 316 ~~C~~CGg~rfv-----------pC~~C~GS~Kv~~e~~~~~~rC~~CNENGLir 359 (366)
..|..|+|.+.+ +|..|+|.-++.. .+|..|+-.|.++
T Consensus 164 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 212 (365)
T PRK14285 164 SICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS------NPCKSCKGKGSLK 212 (365)
T ss_pred ccCCCccCceeEEecCceeEEeeecCCCCCcccccC------CCCCCCCCCCEEe
Confidence 469999998754 7999999987752 3699999888653
No 198
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=73.35 E-value=2 Score=43.78 Aligned_cols=51 Identities=25% Similarity=0.652 Sum_probs=33.6
Q ss_pred cccccccCCccc--------eeeCCCCCCC--ceee------ecCCCccccCCccccCccccCCCCC
Q 017790 314 AVSVCESCGDAR--------FVPCSHCCGS--RKVF------DEEDGQLRRCTNCNENGLIRCPACS 364 (366)
Q Consensus 314 ~~~~C~~CGg~r--------fvpC~~C~GS--~Kv~------~e~~~~~~rC~~CNENGLirCp~C~ 364 (366)
...+|.+|-|.+ -+-|..|.|= .|.= .=.+.+.++|+.|.--|++.|..|.
T Consensus 197 G~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~ 263 (406)
T KOG2813|consen 197 GAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCS 263 (406)
T ss_pred CceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCccccccc
Confidence 356899999998 7999999991 1210 0012245677777777777777764
No 199
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=73.32 E-value=4.9 Score=38.16 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=51.5
Q ss_pred CCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEE-eCCEEEccchHHHHHHhcCcHHHHhcC
Q 017790 230 RTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVF-IRGKHIGGAEEIKQLNETGDLAMLLKG 308 (366)
Q Consensus 230 KT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVF-VdG~~IGGaDEv~~L~EsGeL~kLL~~ 308 (366)
..|++|.+||.++--+++++++.-+..|.+ +--.+.. |...||.+. =+|++++-.-|+++..+.-.=+.+|.+
T Consensus 7 dHCPfcvrarmi~Gl~nipve~~vL~nDDe--~Tp~rmi----G~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt~ 80 (215)
T COG2999 7 DHCPFCVRARMIFGLKNIPVELHVLLNDDE--ETPIRMI----GQKQVPILQKEDGRAMPESLDIVHYVDELDGKPLLTG 80 (215)
T ss_pred ccChHHHHHHHHhhccCCChhhheeccCcc--cChhhhh----cccccceEEccccccchhhhHHHHHHHHhcCchhhcc
Confidence 467899999999999999999887765542 1122333 368899886 478999988888776654333344443
No 200
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=72.28 E-value=18 Score=32.86 Aligned_cols=68 Identities=12% Similarity=0.248 Sum_probs=43.5
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHH--HHHHHHHHHcCCCCCCcccEEEe-----CC--EEEc
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSS--YRKELQDLLGVEGKAITLPQVFI-----RG--KHIG 288 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e--~reEL~elLg~~tg~~TVPqVFV-----dG--~~IG 288 (366)
+.||+.. ...+.+|+-+|+.+||+|+.++|+...+ ...++.+. .....||.+.. || ..|-
T Consensus 2 ~~Ly~~~-------~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~i----NP~gkVP~L~~~~~~d~g~~~~L~ 70 (215)
T PRK13972 2 IDLYFAP-------TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRI----SPNNKIPAIVDHSPADGGEPLSLF 70 (215)
T ss_pred eEEEECC-------CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhh----CcCCCCCEEEeCCCCCCCCceeEE
Confidence 4578643 2468899999999999999888875432 12455443 23568999976 34 2354
Q ss_pred cchHHHHH
Q 017790 289 GAEEIKQL 296 (366)
Q Consensus 289 GaDEv~~L 296 (366)
-..-+.++
T Consensus 71 ES~AI~~Y 78 (215)
T PRK13972 71 ESGAILLY 78 (215)
T ss_pred cHHHHHHH
Confidence 44445443
No 201
>PRK14298 chaperone protein DnaJ; Provisional
Probab=71.72 E-value=4.1 Score=41.52 Aligned_cols=37 Identities=32% Similarity=0.805 Sum_probs=28.8
Q ss_pred cccccCCcccee---------------eCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 316 SVCESCGDARFV---------------PCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 316 ~~C~~CGg~rfv---------------pC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
..|..|.|.+.+ +|..|+|.-++. ..+|..|+-.|.+
T Consensus 159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------~~~C~~C~G~g~v 210 (377)
T PRK14298 159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI------ESPCPVCSGTGKV 210 (377)
T ss_pred CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc------CCCCCCCCCccEE
Confidence 579999998753 799999997764 2369999988865
No 202
>PRK14281 chaperone protein DnaJ; Provisional
Probab=71.63 E-value=4.1 Score=41.79 Aligned_cols=37 Identities=27% Similarity=0.776 Sum_probs=28.2
Q ss_pred cccccCCccce---------------eeCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 316 SVCESCGDARF---------------VPCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 316 ~~C~~CGg~rf---------------vpC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
..|..|+|.+. .+|..|+|.-++.. .+|..|+-.|.+
T Consensus 180 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 231 (397)
T PRK14281 180 ETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK------DRCPACYGEGIK 231 (397)
T ss_pred ccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC------CCCCCCCCCccE
Confidence 46888988874 36999999887752 269999888775
No 203
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=71.55 E-value=15 Score=30.27 Aligned_cols=56 Identities=18% Similarity=0.367 Sum_probs=34.0
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHH----HHh---CCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEE--eCCEEE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMI----FKS---YRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVF--IRGKHI 287 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~I----L~~---~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVF--VdG~~I 287 (366)
||.|+++||+ .|.....+ .+. .++.+..+|++.+. ++.+.++ ...+|.++ .+|+.+
T Consensus 28 lV~F~a~wC~------~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~----~l~~~~~----V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 28 LIKITSDWCF------SCIHIEPVWKEVIQELEPLGVGIATVNAGHER----RLARKLG----AHSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEECCccH------hHHHhhHHHHHHHHHHHhcCceEEEEeccccH----HHHHHcC----CccCCEEEEEECCEEE
Confidence 5567777764 78754333 233 35777888877543 3445554 56888775 577654
No 204
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=71.39 E-value=13 Score=29.52 Aligned_cols=54 Identities=13% Similarity=0.331 Sum_probs=32.4
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHh----C--CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe--CCE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKS----Y--RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI--RGK 285 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~----~--gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV--dG~ 285 (366)
+|.|+++||+ .|.++..+|+. + .+.+..+|++.+. ++.+.++ ...+|.+++ +|+
T Consensus 22 ~v~f~a~wC~------~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~----~~~~~~~----v~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPRCS------HCHDLAPTWREFAKEMDGVIRIGAVNCGDDR----MLCRSQG----VNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCCCh------HHHHhHHHHHHHHHHhcCceEEEEEeCCccH----HHHHHcC----CCccCEEEEEcCCC
Confidence 5667777664 89876655433 2 2456777876543 3444444 467888844 554
No 205
>PRK14297 chaperone protein DnaJ; Provisional
Probab=71.16 E-value=4.1 Score=41.43 Aligned_cols=37 Identities=32% Similarity=0.944 Sum_probs=29.1
Q ss_pred cccccCCcccee---------------eCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 316 SVCESCGDARFV---------------PCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 316 ~~C~~CGg~rfv---------------pC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
..|..|.|.+.+ +|..|+|..++.. .+|..|+-.|.+
T Consensus 166 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 217 (380)
T PRK14297 166 KTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE------DPCNKCHGKGKV 217 (380)
T ss_pred ccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC------CCCCCCCCCeEE
Confidence 579999998754 6999999987652 369999988865
No 206
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.05 E-value=19 Score=34.19 Aligned_cols=66 Identities=20% Similarity=0.324 Sum_probs=49.0
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHH
Q 017790 219 VIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQ 295 (366)
Q Consensus 219 VVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~ 295 (366)
.++.-++|| .+.-+|.+|.-.||+|++.-+.+... +..++....-.++|.+-|||..|...-.+.+
T Consensus 5 kL~Yf~~RG------~ae~iR~lf~~a~v~fEd~r~~~~~~-----w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~R 70 (206)
T KOG1695|consen 5 KLTYFNIRG------LAEPIRLLFAYAGVSFEDKRITMEDA-----WEELKDKMPFGQLPVLEVDGKKLVQSRAILR 70 (206)
T ss_pred EEEecCcch------hHHHHHHHHHhcCCCcceeeeccccc-----hhhhcccCCCCCCCEEeECCEeeccHHHHHH
Confidence 455556666 78899999999999999999986643 2223222335789999999999887766655
No 207
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=71.04 E-value=18 Score=31.25 Aligned_cols=64 Identities=11% Similarity=0.268 Sum_probs=39.1
Q ss_pred CCcEEEEEeCCCCCCCCCchHHHHHHHHHh----CC--CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEE--EeCCEE
Q 017790 215 NNKIVIYFTSLRGIRRTYEDCCSVRMIFKS----YR--VGVDERDISMDSSYRKELQDLLGVEGKAITLPQV--FIRGKH 286 (366)
Q Consensus 215 ~~kVVVYTTSL~gIRKT~~dC~raK~IL~~----~g--V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqV--FVdG~~ 286 (366)
...||.|+..+ +.|++|..+.-+|+. +. +.+..+|++.++ +|.+.++ ..++|.+ |-+|+.
T Consensus 28 ~~~v~~f~~~~----~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f~----V~sIPTli~fkdGk~ 95 (111)
T cd02965 28 GDLVLLLAGDP----VRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARFG----VLRTPALLFFRDGRY 95 (111)
T ss_pred CCEEEEecCCc----ccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHcC----CCcCCEEEEEECCEE
Confidence 33455555443 135699987766644 32 446677877553 6666665 5677776 558987
Q ss_pred Eccc
Q 017790 287 IGGA 290 (366)
Q Consensus 287 IGGa 290 (366)
++..
T Consensus 96 v~~~ 99 (111)
T cd02965 96 VGVL 99 (111)
T ss_pred EEEE
Confidence 7543
No 208
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=71.02 E-value=14 Score=33.58 Aligned_cols=57 Identities=19% Similarity=0.321 Sum_probs=34.8
Q ss_pred cEEEE-EeCCCCCCCCCchHHHHHHHHH----hC-CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEE--EeCCEEEc
Q 017790 217 KIVIY-FTSLRGIRRTYEDCCSVRMIFK----SY-RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQV--FIRGKHIG 288 (366)
Q Consensus 217 kVVVY-TTSL~gIRKT~~dC~raK~IL~----~~-gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqV--FVdG~~IG 288 (366)
.|||+ +.+|| ..|..+..+|+ .+ .|.|..+|++.. ++.+.++ ...+|.+ |-+|+.++
T Consensus 85 ~VVV~Fya~wc------~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~----v~~vPTlllyk~G~~v~ 149 (175)
T cd02987 85 TVVVHIYEPGI------PGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFD----TDALPALLVYKGGELIG 149 (175)
T ss_pred EEEEEEECCCC------chHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCC----CCCCCEEEEEECCEEEE
Confidence 46654 44554 48986655443 33 366777777632 5555554 4678866 55887764
No 209
>PRK14294 chaperone protein DnaJ; Provisional
Probab=70.84 E-value=4.1 Score=41.25 Aligned_cols=37 Identities=32% Similarity=0.844 Sum_probs=29.3
Q ss_pred cccccCCcccee-----------eCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 316 SVCESCGDARFV-----------PCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 316 ~~C~~CGg~rfv-----------pC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
..|..|.|.+.+ +|..|+|.-++.. ..|..|+-.|.+
T Consensus 162 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 209 (366)
T PRK14294 162 TTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV------SPCKTCHGQGRV 209 (366)
T ss_pred ccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC------cCCCCCCCceEe
Confidence 479999998754 7999999987742 369999988765
No 210
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.81 E-value=3 Score=47.48 Aligned_cols=24 Identities=38% Similarity=0.819 Sum_probs=20.1
Q ss_pred cccccccCCccce------------eeCCCCCCCce
Q 017790 314 AVSVCESCGDARF------------VPCSHCCGSRK 337 (366)
Q Consensus 314 ~~~~C~~CGg~rf------------vpC~~C~GS~K 337 (366)
+.+.|+.|.|.++ ++|+.|+|++.
T Consensus 735 ~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 735 KGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCCCCccceEEEEEccCCCCcccCCCCcCCcee
Confidence 3578999999986 58999999865
No 211
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=70.57 E-value=11 Score=39.99 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=39.7
Q ss_pred CCcEEEEEeCCCCCCCCCchHHHHHH----HHHhC-CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEE
Q 017790 215 NNKIVIYFTSLRGIRRTYEDCCSVRM----IFKSY-RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKH 286 (366)
Q Consensus 215 ~~kVVVYTTSL~gIRKT~~dC~raK~----IL~~~-gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~ 286 (366)
.-.|-||.+..| ++|-++.+ +.... +|..+.+|+... .|+.+..+ ...||.+||||+.
T Consensus 477 ~~~i~v~~~~~C------~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~----~~~~~~~~----v~~vP~~~i~~~~ 539 (555)
T TIGR03143 477 PVNIKIGVSLSC------TLCPDVVLAAQRIASLNPNVEAEMIDVSHF----PDLKDEYG----IMSVPAIVVDDQQ 539 (555)
T ss_pred CeEEEEEECCCC------CCcHHHHHHHHHHHHhCCCceEEEEECccc----HHHHHhCC----ceecCEEEECCEE
Confidence 345788887655 47775444 44455 799999998754 34544443 5789999999953
No 212
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.53 E-value=4 Score=43.17 Aligned_cols=46 Identities=30% Similarity=0.664 Sum_probs=36.1
Q ss_pred ccccccCCccceeeCCCCCCCceeeecCCCccccCCccccCc--cccCCCCC
Q 017790 315 VSVCESCGDARFVPCSHCCGSRKVFDEEDGQLRRCTNCNENG--LIRCPACS 364 (366)
Q Consensus 315 ~~~C~~CGg~rfvpC~~C~GS~Kv~~e~~~~~~rC~~CNENG--LirCp~C~ 364 (366)
.-.|..||-. +.|+.|+++-...... ..++|..|+-.- -.+||.|.
T Consensus 213 ~~~C~~Cg~~--~~C~~C~~~l~~h~~~--~~l~Ch~Cg~~~~~~~~Cp~C~ 260 (505)
T TIGR00595 213 NLLCRSCGYI--LCCPNCDVSLTYHKKE--GKLRCHYCGYQEPIPKTCPQCG 260 (505)
T ss_pred eeEhhhCcCc--cCCCCCCCceEEecCC--CeEEcCCCcCcCCCCCCCCCCC
Confidence 4589999965 6899999997776543 478999998665 45799995
No 213
>PRK14873 primosome assembly protein PriA; Provisional
Probab=69.48 E-value=4.8 Score=44.21 Aligned_cols=46 Identities=30% Similarity=0.741 Sum_probs=35.8
Q ss_pred ccccccCCccceeeCCCCCCCceeeecCCCccccCCccccCc-cccCCCCC
Q 017790 315 VSVCESCGDARFVPCSHCCGSRKVFDEEDGQLRRCTNCNENG-LIRCPACS 364 (366)
Q Consensus 315 ~~~C~~CGg~rfvpC~~C~GS~Kv~~e~~~~~~rC~~CNENG-LirCp~C~ 364 (366)
.-.|..||- -+.|..|+++-..... ...++|..|+-.- -.+||.|.
T Consensus 383 ~l~C~~Cg~--~~~C~~C~~~L~~h~~--~~~l~Ch~CG~~~~p~~Cp~Cg 429 (665)
T PRK14873 383 SLACARCRT--PARCRHCTGPLGLPSA--GGTPRCRWCGRAAPDWRCPRCG 429 (665)
T ss_pred eeEhhhCcC--eeECCCCCCceeEecC--CCeeECCCCcCCCcCccCCCCc
Confidence 458999985 4799999999877653 3578999998643 45899996
No 214
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=69.43 E-value=17 Score=32.59 Aligned_cols=60 Identities=22% Similarity=0.449 Sum_probs=35.8
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHH----HhC---CCcEEEEEccCCHHHHHHHHHHHcCCC---CCCcccEE--EeCCE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIF----KSY---RVGVDERDISMDSSYRKELQDLLGVEG---KAITLPQV--FIRGK 285 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL----~~~---gV~ydErDVsmD~e~reEL~elLg~~t---g~~TVPqV--FVdG~ 285 (366)
||.|+++||+ .|.++...| +.+ ++.+..+|++.+++ +.+.++ .. +...+|.+ |-+|+
T Consensus 51 vV~Fya~wC~------~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~----la~~~~-V~~~~~v~~~PT~ilf~~Gk 119 (152)
T cd02962 51 LVEFFTTWSP------ECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN----VAEKFR-VSTSPLSKQLPTIILFQGGK 119 (152)
T ss_pred EEEEECCCCH------HHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH----HHHHcC-ceecCCcCCCCEEEEEECCE
Confidence 5667777664 899765544 333 37788889877653 444444 21 12347766 56886
Q ss_pred EEc
Q 017790 286 HIG 288 (366)
Q Consensus 286 ~IG 288 (366)
.++
T Consensus 120 ~v~ 122 (152)
T cd02962 120 EVA 122 (152)
T ss_pred EEE
Confidence 653
No 215
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=69.43 E-value=17 Score=31.47 Aligned_cols=64 Identities=11% Similarity=-0.086 Sum_probs=34.2
Q ss_pred EEE-EEeCCCCCCCCCchHHHHHH-------HHHhC--CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe---CC
Q 017790 218 IVI-YFTSLRGIRRTYEDCCSVRM-------IFKSY--RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI---RG 284 (366)
Q Consensus 218 VVV-YTTSL~gIRKT~~dC~raK~-------IL~~~--gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV---dG 284 (366)
|+| |++.+| .+|.+... +.+.+ +.-+..+|++..++..+.+.+++....+...+|.+.+ +|
T Consensus 18 Vll~f~a~WC------~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G 91 (124)
T cd02955 18 IFLSIGYSTC------HWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDL 91 (124)
T ss_pred EEEEEccCCC------HhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCC
Confidence 555 555555 48986532 22222 3445667776655554444443322223556787755 57
Q ss_pred EEE
Q 017790 285 KHI 287 (366)
Q Consensus 285 ~~I 287 (366)
+.|
T Consensus 92 ~~~ 94 (124)
T cd02955 92 KPF 94 (124)
T ss_pred CEE
Confidence 666
No 216
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=68.96 E-value=15 Score=29.21 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHh----C--CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKS----Y--RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~----~--gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV 282 (366)
-+|.|.++||+ .|.+....|+. + .+.+..+|++.+. ..++.+.++ ...+|.+++
T Consensus 21 ~lv~f~a~wC~------~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~~----i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCG------HCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKYG----VQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCH------HHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHcC----CCcCCEEEE
Confidence 36677777664 88865444432 2 2456666766431 234555554 567898865
No 217
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=68.66 E-value=19 Score=28.11 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=30.1
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHh----C--CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKS----Y--RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~----~--gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV 282 (366)
+|+|.+++| ..|.+.+..|.. + .+.+...|++.+ .++.+.++ ...+|.+++
T Consensus 22 lv~f~a~~C------~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~----i~~~P~~~~ 78 (103)
T cd03001 22 LVEFYAPWC------GHCKNLAPEWKKAAKALKGIVKVGAVDADVH----QSLAQQYG----VRGFPTIKV 78 (103)
T ss_pred EEEEECCCC------HHHHHHhHHHHHHHHHhcCCceEEEEECcch----HHHHHHCC----CCccCEEEE
Confidence 455555544 489976655533 2 356677777644 34555554 467897744
No 218
>PRK14287 chaperone protein DnaJ; Provisional
Probab=68.60 E-value=3.8 Score=41.65 Aligned_cols=38 Identities=32% Similarity=0.923 Sum_probs=29.6
Q ss_pred cccccCCccce---------------eeCCCCCCCceeeecCCCccccCCccccCcccc
Q 017790 316 SVCESCGDARF---------------VPCSHCCGSRKVFDEEDGQLRRCTNCNENGLIR 359 (366)
Q Consensus 316 ~~C~~CGg~rf---------------vpC~~C~GS~Kv~~e~~~~~~rC~~CNENGLir 359 (366)
..|..|.|.+. .+|..|+|.-++.. ..|..|+-.|.+.
T Consensus 156 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 208 (371)
T PRK14287 156 ETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK------QKCATCGGKGKVR 208 (371)
T ss_pred cccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc------ccCCCCCCeeEEe
Confidence 57999999875 36999999988752 3699999887653
No 219
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=68.00 E-value=3.6 Score=34.31 Aligned_cols=61 Identities=18% Similarity=0.102 Sum_probs=37.0
Q ss_pred HHHHHHHhCCCcEEEEEccC-CHHHHHHHHHHHc--CCCCCCcccEEEeCCEEEccchHHHHHH
Q 017790 237 SVRMIFKSYRVGVDERDISM-DSSYRKELQDLLG--VEGKAITLPQVFIRGKHIGGAEEIKQLN 297 (366)
Q Consensus 237 raK~IL~~~gV~ydErDVsm-D~e~reEL~elLg--~~tg~~TVPqVFVdG~~IGGaDEv~~L~ 297 (366)
.++.++..+|+..++++-.+ +.+..+.+++-.. ...|...+|.++|+|+.+-|+.+...|.
T Consensus 87 ~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l~ 150 (154)
T cd03023 87 SLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFIIGDTVIPGAVPADTLK 150 (154)
T ss_pred HHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEECCEEecCCCCHHHHH
Confidence 46677888888765433222 2233333322211 1224678999999999999998765543
No 220
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.78 E-value=29 Score=33.71 Aligned_cols=75 Identities=12% Similarity=0.009 Sum_probs=54.4
Q ss_pred CCcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHH
Q 017790 215 NNKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIK 294 (366)
Q Consensus 215 ~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~ 294 (366)
.+.|.||..= .+++-.||+-.|+.+||+|+.++++... +-++--.... -...||.+.-+|+.|+-.-.+.
T Consensus 7 ~~~vrL~~~w------~sPfa~R~~iaL~~KgI~yE~veedl~~--Ks~~ll~~np--~hkKVPvL~Hn~k~i~ESliiv 76 (231)
T KOG0406|consen 7 DGTVKLLGMW------FSPFAQRVRIALKLKGIPYEYVEEDLTN--KSEWLLEKNP--VHKKVPVLEHNGKPICESLIIV 76 (231)
T ss_pred CCeEEEEEee------cChHHHHHHHHHHhcCCceEEEecCCCC--CCHHHHHhcc--ccccCCEEEECCceehhhHHHH
Confidence 3779999753 4568889999999999999998887642 3344322221 2468999999999988777766
Q ss_pred HHHhc
Q 017790 295 QLNET 299 (366)
Q Consensus 295 ~L~Es 299 (366)
++.++
T Consensus 77 eYiDe 81 (231)
T KOG0406|consen 77 EYIDE 81 (231)
T ss_pred HHHHh
Confidence 66554
No 221
>PRK14278 chaperone protein DnaJ; Provisional
Probab=67.70 E-value=5.5 Score=40.60 Aligned_cols=37 Identities=30% Similarity=0.850 Sum_probs=29.3
Q ss_pred cccccCCccce---------------eeCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 316 SVCESCGDARF---------------VPCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 316 ~~C~~CGg~rf---------------vpC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
..|..|.|.+. .+|..|+|.-++.. .+|+.|+-.|.+
T Consensus 157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 208 (378)
T PRK14278 157 VTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP------DPCHECAGDGRV 208 (378)
T ss_pred eecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC------CCCCCCCCceeE
Confidence 47999999864 47999999988753 369999988875
No 222
>PRK14293 chaperone protein DnaJ; Provisional
Probab=67.53 E-value=4.8 Score=40.87 Aligned_cols=37 Identities=32% Similarity=0.898 Sum_probs=26.7
Q ss_pred cccccCCcccee---------------eCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 316 SVCESCGDARFV---------------PCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 316 ~~C~~CGg~rfv---------------pC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
..|..|.|.+.+ +|..|+|.-++.. .+|..|+-.|.+
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 212 (374)
T PRK14293 161 TTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE------DPCDACGGQGVK 212 (374)
T ss_pred eeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec------cCCCCCCCCccc
Confidence 468888888753 6888888877642 268888877764
No 223
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=66.61 E-value=3.6 Score=44.86 Aligned_cols=43 Identities=23% Similarity=0.559 Sum_probs=27.8
Q ss_pred ccccccCCcccee----eCCCCCCCceeeecC--CCccc-----cCCccccCcc
Q 017790 315 VSVCESCGDARFV----PCSHCCGSRKVFDEE--DGQLR-----RCTNCNENGL 357 (366)
Q Consensus 315 ~~~C~~CGg~rfv----pC~~C~GS~Kv~~e~--~~~~~-----rC~~CNENGL 357 (366)
...|.-|.|.+-| .|+.|+|.-|+..-. +..+. -|++|-.|+-
T Consensus 53 ~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~c~~cG~~~~~~~~~lc~~c~~~~~ 106 (715)
T COG1107 53 EIPCPKCRGKGTVTVYDTCPECGGTGKVLTCDICGDIIVPWEEGLCPECRRKPK 106 (715)
T ss_pred CCCCCeeccceeEEEEeecccCCCceeEEeeccccceecCcccccChhHhhCCc
Confidence 3478899888764 699999988875321 11122 3777766654
No 224
>PRK14291 chaperone protein DnaJ; Provisional
Probab=66.57 E-value=4.9 Score=40.95 Aligned_cols=37 Identities=32% Similarity=0.885 Sum_probs=25.7
Q ss_pred ccccccCCcccee-----------eCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 315 VSVCESCGDARFV-----------PCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 315 ~~~C~~CGg~rfv-----------pC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
...|..|.|.+.+ +|..|+|.-.+ ...|..|+-.|.+
T Consensus 173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-------~~~C~~C~G~g~v 220 (382)
T PRK14291 173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL-------REPCSKCNGRGLV 220 (382)
T ss_pred CccCCCCCCceEEEEecceEEEEecCCCCCCceEE-------ccCCCCCCCCceE
Confidence 3468888888764 68888888732 1368888877754
No 225
>PRK14292 chaperone protein DnaJ; Provisional
Probab=66.51 E-value=4.7 Score=40.77 Aligned_cols=38 Identities=32% Similarity=0.774 Sum_probs=28.1
Q ss_pred ccccccCCcccee---------------eCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 315 VSVCESCGDARFV---------------PCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 315 ~~~C~~CGg~rfv---------------pC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
...|..|+|.+.+ +|..|+|.-+.. ...|..|+-.|.+
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------~~~C~~C~G~g~v 209 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII------TDPCTVCRGRGRT 209 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec------CCCCCCCCCceEE
Confidence 3568888887654 599999987664 2478999887764
No 226
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=66.46 E-value=14 Score=31.93 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=29.4
Q ss_pred CCCCCCCCCchHHHH----HHHHHhCC--CcEEEEEccCCHHHH---HHHHHHHcCCCCCC-cccEEEe
Q 017790 224 SLRGIRRTYEDCCSV----RMIFKSYR--VGVDERDISMDSSYR---KELQDLLGVEGKAI-TLPQVFI 282 (366)
Q Consensus 224 SL~gIRKT~~dC~ra----K~IL~~~g--V~ydErDVsmD~e~r---eEL~elLg~~tg~~-TVPqVFV 282 (366)
+||+ +|..+ .++.+.+. +.|..+|++..+.++ .+++..++ .. .+|.+++
T Consensus 38 ~WC~------pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~----I~~~iPT~~~ 96 (119)
T cd02952 38 SWCP------DCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK----LTTGVPTLLR 96 (119)
T ss_pred CCCH------hHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC----cccCCCEEEE
Confidence 5775 89954 45555554 778888987543221 34444333 34 7898865
No 227
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=66.30 E-value=14 Score=28.82 Aligned_cols=55 Identities=18% Similarity=0.410 Sum_probs=30.7
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHH----hC-----CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe--CCE
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFK----SY-----RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI--RGK 285 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~----~~-----gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV--dG~ 285 (366)
-+|.|+++||+ .|.+....|+ .+ .+.+..+|.+.+. ++.+.++ ...+|.+++ +|+
T Consensus 19 ~lv~f~a~wC~------~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~----v~~~Pt~~~~~~g~ 84 (102)
T cd03005 19 HFVKFFAPWCG------HCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR----ELCSEFQ----VRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEEECCCCH------HHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh----hhHhhcC----CCcCCEEEEEeCCC
Confidence 35666666664 8886544332 22 3556666765443 3444443 567898654 553
No 228
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=65.64 E-value=3.3 Score=36.13 Aligned_cols=58 Identities=14% Similarity=0.231 Sum_probs=30.0
Q ss_pred CCCcEEEEEeCCCCCCCCCchHHH----HHHHHHhC-CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe
Q 017790 214 SNNKIVIYFTSLRGIRRTYEDCCS----VRMIFKSY-RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 214 ~~~kVVVYTTSL~gIRKT~~dC~r----aK~IL~~~-gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV 282 (366)
+.-.|+|++-+||| ||.+ +.++++.. ++.+..+..+. ..+.+.+.+. .|...+|.++|
T Consensus 41 ~~~~ilvi~e~WCg------D~~~~vP~l~kiae~~p~i~~~~i~rd~---~~el~~~~lt--~g~~~IP~~I~ 103 (129)
T PF14595_consen 41 KPYNILVITETWCG------DCARNVPVLAKIAEANPNIEVRIILRDE---NKELMDQYLT--NGGRSIPTFIF 103 (129)
T ss_dssp S-EEEEEE--TT-H------HHHHHHHHHHHHHHH-TTEEEEEE-HHH---HHHHTTTTTT---SS--SSEEEE
T ss_pred CCcEEEEEECCCch------hHHHHHHHHHHHHHhCCCCeEEEEEecC---ChhHHHHHHh--CCCeecCEEEE
Confidence 44479999999987 9994 56677766 55555544432 2222333332 45789999866
No 229
>PRK10542 glutathionine S-transferase; Provisional
Probab=65.41 E-value=16 Score=32.42 Aligned_cols=60 Identities=7% Similarity=0.109 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhCCCcEEEEEccCCHH---HHHHHHHHHcCCCCCCcccEEEe-CCEEEccchHHHHHH
Q 017790 234 DCCSVRMIFKSYRVGVDERDISMDSS---YRKELQDLLGVEGKAITLPQVFI-RGKHIGGAEEIKQLN 297 (366)
Q Consensus 234 dC~raK~IL~~~gV~ydErDVsmD~e---~reEL~elLg~~tg~~TVPqVFV-dG~~IGGaDEv~~L~ 297 (366)
.+.+++-+|+.+||+|+.+.|+.... ..+++.++- ....||.+.+ +|..|-....+.+..
T Consensus 10 ~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~n----P~g~vPvL~~~~g~~l~eS~aI~~YL 73 (201)
T PRK10542 10 CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAIN----PKGQVPALLLDDGTLLTEGVAIMQYL 73 (201)
T ss_pred HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhC----cCCCCCeEEeCCCcEeecHHHHHHHH
Confidence 35678889999999999888765421 113444432 3568999976 666777666666543
No 230
>PF15616 TerY-C: TerY-C metal binding domain
Probab=64.63 E-value=6.1 Score=35.26 Aligned_cols=39 Identities=28% Similarity=0.698 Sum_probs=28.8
Q ss_pred cccccCCcc-ceeeCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 316 SVCESCGDA-RFVPCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 316 ~~C~~CGg~-rfvpC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
-.|..||.. .|+.| .|+ |++--++.....||.|..+|-.
T Consensus 78 PgCP~CGn~~~fa~C-~CG---kl~Ci~g~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 78 PGCPHCGNQYAFAVC-GCG---KLFCIDGEGEVTCPWCGNEGSF 117 (131)
T ss_pred CCCCCCcChhcEEEe-cCC---CEEEeCCCCCEECCCCCCeeee
Confidence 369999999 99999 575 5653222347799999988753
No 231
>PRK10357 putative glutathione S-transferase; Provisional
Probab=64.61 E-value=18 Score=32.30 Aligned_cols=66 Identities=5% Similarity=-0.033 Sum_probs=42.5
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe-CCEEEccchHHHH
Q 017790 219 VIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI-RGKHIGGAEEIKQ 295 (366)
Q Consensus 219 VVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV-dG~~IGGaDEv~~ 295 (366)
.+|+... .....+|+-+|+.+||+|+.+.++.... ..++.+. ....+||.+.. +|.-|-....+.+
T Consensus 2 ~Ly~~~~------s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~----nP~g~vP~L~~~~g~~l~eS~aI~~ 68 (202)
T PRK10357 2 KLIGSYT------SPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQY----NPLGKVPALVTEEGECWFDSPIIAE 68 (202)
T ss_pred eeecCCC------CchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhc----CCccCCCeEEeCCCCeeecHHHHHH
Confidence 4666443 3578899999999999999988875321 1233332 23578999985 5655544444443
No 232
>PRK14283 chaperone protein DnaJ; Provisional
Probab=63.90 E-value=5.8 Score=40.32 Aligned_cols=37 Identities=32% Similarity=0.944 Sum_probs=24.6
Q ss_pred cccccCCcccee---------------eCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 316 SVCESCGDARFV---------------PCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 316 ~~C~~CGg~rfv---------------pC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
..|..|+|.+.+ +|..|+|.-+.. ...|..|+-.|.+
T Consensus 164 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------~~~C~~C~G~g~v 215 (378)
T PRK14283 164 KTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV------EKPCSNCHGKGVV 215 (378)
T ss_pred ccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec------CCCCCCCCCceee
Confidence 467778777553 588888776653 2357777777654
No 233
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=63.71 E-value=5.5 Score=35.02 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCcEEEEEc-cCCHHHHHHHHHHHcC--CCCCCcccEEEeCCEEEccchHHHHHH
Q 017790 237 SVRMIFKSYRVGVDERDI-SMDSSYRKELQDLLGV--EGKAITLPQVFIRGKHIGGAEEIKQLN 297 (366)
Q Consensus 237 raK~IL~~~gV~ydErDV-smD~e~reEL~elLg~--~tg~~TVPqVFVdG~~IGGaDEv~~L~ 297 (366)
.++.++...|+..++..- ..+.++++++++.... ..|...+|.++|+|+++=|.+.+..|.
T Consensus 125 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~~ 188 (192)
T cd03022 125 VLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARGVFGVPTFVVDGEMFWGQDRLDMLE 188 (192)
T ss_pred HHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCcCCeEEECCeeecccccHHHHH
Confidence 467788888887543321 2234455555433211 225788999999999999999886544
No 234
>PRK05580 primosome assembly protein PriA; Validated
Probab=63.65 E-value=5.8 Score=43.43 Aligned_cols=46 Identities=28% Similarity=0.706 Sum_probs=35.0
Q ss_pred ccccccCCccceeeCCCCCCCceeeecCCCccccCCccccCc--cccCCCCC
Q 017790 315 VSVCESCGDARFVPCSHCCGSRKVFDEEDGQLRRCTNCNENG--LIRCPACS 364 (366)
Q Consensus 315 ~~~C~~CGg~rfvpC~~C~GS~Kv~~e~~~~~~rC~~CNENG--LirCp~C~ 364 (366)
.-.|..||-. +.|..|+++-..... ...++|..|+-.- -.+||.|.
T Consensus 381 ~~~C~~Cg~~--~~C~~C~~~l~~h~~--~~~l~Ch~Cg~~~~~~~~Cp~Cg 428 (679)
T PRK05580 381 FLLCRDCGWV--AECPHCDASLTLHRF--QRRLRCHHCGYQEPIPKACPECG 428 (679)
T ss_pred ceEhhhCcCc--cCCCCCCCceeEECC--CCeEECCCCcCCCCCCCCCCCCc
Confidence 4589999865 589999998765543 3578999998764 35799995
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.60 E-value=14 Score=37.35 Aligned_cols=61 Identities=13% Similarity=0.365 Sum_probs=41.1
Q ss_pred cEEEEE-eCCCCCCCCCchHHHHHHHHHhC----C--CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEE--EeCCEEE
Q 017790 217 KIVIYF-TSLRGIRRTYEDCCSVRMIFKSY----R--VGVDERDISMDSSYRKELQDLLGVEGKAITLPQV--FIRGKHI 287 (366)
Q Consensus 217 kVVVYT-TSL~gIRKT~~dC~raK~IL~~~----g--V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqV--FVdG~~I 287 (366)
+|+||+ ++|| ..|....-+|+.+ + +.+..+|++.++. +-..+| ..++|.| |++|+.|
T Consensus 45 PVlV~fWap~~------~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~----vAaqfg----iqsIPtV~af~dGqpV 110 (304)
T COG3118 45 PVLVDFWAPWC------GPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM----VAAQFG----VQSIPTVYAFKDGQPV 110 (304)
T ss_pred CeEEEecCCCC------chHHHHHHHHHHHHHHhCCceEEEEecCCcchh----HHHHhC----cCcCCeEEEeeCCcCc
Confidence 466655 4444 4899877777654 3 4456778876653 445555 6789988 7899988
Q ss_pred ccch
Q 017790 288 GGAE 291 (366)
Q Consensus 288 GGaD 291 (366)
-|+.
T Consensus 111 dgF~ 114 (304)
T COG3118 111 DGFQ 114 (304)
T ss_pred cccC
Confidence 7763
No 236
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=63.57 E-value=5.1 Score=37.61 Aligned_cols=30 Identities=27% Similarity=0.709 Sum_probs=24.8
Q ss_pred eeeCCCCCCCceeeecCCCccccCCccccCcccc
Q 017790 326 FVPCSHCCGSRKVFDEEDGQLRRCTNCNENGLIR 359 (366)
Q Consensus 326 fvpC~~C~GS~Kv~~e~~~~~~rC~~CNENGLir 359 (366)
-..|+.|+|+-++.... .+|+.|+-.|-++
T Consensus 99 ~~~C~~C~G~G~~i~~~----~~C~~C~G~G~v~ 128 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQ----RECDTCAGTGRFR 128 (186)
T ss_pred CCcCCCCCCeeEEecCC----CCCCCCCCccEEe
Confidence 77999999998887532 5899999998764
No 237
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=63.35 E-value=30 Score=33.07 Aligned_cols=56 Identities=16% Similarity=0.324 Sum_probs=34.2
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHh----CC--CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEE--eCCEEE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKS----YR--VGVDERDISMDSSYRKELQDLLGVEGKAITLPQVF--IRGKHI 287 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~----~g--V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVF--VdG~~I 287 (366)
+|.|+++||+ .|.+....++. ++ +.+..+|++.+ .++.+.++ ...+|.++ -+|+.+
T Consensus 56 lV~FyApWC~------~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~----~~l~~~~~----I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 56 FVKFYAPWCS------HCRKMAPAWERLAKALKGQVNVADLDATRA----LNLAKRFA----IKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEECCCCh------HHHHHHHHHHHHHHHcCCCeEEEEecCccc----HHHHHHcC----CCcCCEEEEEECCEEE
Confidence 5667777765 89876665543 33 55666666544 34555555 46778764 477654
No 238
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=62.48 E-value=24 Score=28.77 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=30.4
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhC-----CCcEEEEEcc-CCHHHHHHHHHHHcCCCCCCcccEEEe
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSY-----RVGVDERDIS-MDSSYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~-----gV~ydErDVs-mD~e~reEL~elLg~~tg~~TVPqVFV 282 (366)
+|.|+++||+ .|.+..-.|+.+ ++.+..+|.+ .+ .++.+.++ ...+|.+++
T Consensus 22 lV~F~a~WC~------~C~~~~p~l~~la~~~~~~~~~~vd~~~~~----~~l~~~~~----V~~~PT~~l 78 (100)
T cd02999 22 AVLFYASWCP------FSASFRPHFNALSSMFPQIRHLAIEESSIK----PSLLSRYG----VVGFPTILL 78 (100)
T ss_pred EEEEECCCCH------HHHhHhHHHHHHHHHhccCceEEEECCCCC----HHHHHhcC----CeecCEEEE
Confidence 5667777775 898766555432 3556666654 22 24555554 567897753
No 239
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=62.47 E-value=21 Score=27.79 Aligned_cols=51 Identities=14% Similarity=0.340 Sum_probs=29.7
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHH----hC----CCcEEEEEccC-CHHHHHHHHHHHcCCCCCCcccEEEe
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFK----SY----RVGVDERDISM-DSSYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~----~~----gV~ydErDVsm-D~e~reEL~elLg~~tg~~TVPqVFV 282 (366)
||.|++++| ..|.+...+|+ .+ ++.+...|.+. +. .+.+.++ ...+|.+++
T Consensus 22 ~v~f~a~~C------~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~~----i~~~P~~~~ 81 (105)
T cd02998 22 LVEFYAPWC------GHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK----DLAKKYG----VSGFPTLKF 81 (105)
T ss_pred EEEEECCCC------HHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch----hhHHhCC----CCCcCEEEE
Confidence 566766665 48986554443 33 25566667665 33 3444444 467898865
No 240
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.64 E-value=21 Score=32.13 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=41.8
Q ss_pred chHHHHHHHHHhCCCcEEEEEccCCH-HHHHHHHHHHcCCCCCCcccEEEeCCE-EEccchHHHHH
Q 017790 233 EDCCSVRMIFKSYRVGVDERDISMDS-SYRKELQDLLGVEGKAITLPQVFIRGK-HIGGAEEIKQL 296 (366)
Q Consensus 233 ~dC~raK~IL~~~gV~ydErDVsmD~-e~reEL~elLg~~tg~~TVPqVFVdG~-~IGGaDEv~~L 296 (366)
..|.+++-+|..+|++|+.+.|+... ....++.+. .....||.+-.++- .|-....+.++
T Consensus 10 p~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~----nP~gkVPvL~~~~~~~l~ES~AI~~Y 71 (211)
T COG0625 10 PYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLAL----NPLGKVPALVDDDGEVLTESGAILEY 71 (211)
T ss_pred cchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhc----CCCCCCCEEeeCCCCeeecHHHHHHH
Confidence 68999999999999999999988764 222344432 33578999988764 45444444443
No 241
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=61.13 E-value=33 Score=30.12 Aligned_cols=79 Identities=28% Similarity=0.532 Sum_probs=47.2
Q ss_pred CCCCchHH-----------HHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHH
Q 017790 229 RRTYEDCC-----------SVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLN 297 (366)
Q Consensus 229 RKT~~dC~-----------raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~ 297 (366)
.+||..|. +++.+|..+|+.+...-+.++.+ ++... ...-|.|.|+|+
T Consensus 12 g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~---~~~~~------~~~S~~I~inG~------------ 70 (120)
T PF10865_consen 12 GKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE---EFARQ------PLESPTIRINGR------------ 70 (120)
T ss_pred CCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH---HHhhc------ccCCCeeeECCE------------
Confidence 46777776 45667888998765554444432 22111 245699999999
Q ss_pred hcCcHHHHhcCCCCcccccccccCCccceeeCCCCCC-Cceeee
Q 017790 298 ETGDLAMLLKGFPVVNAVSVCESCGDARFVPCSHCCG-SRKVFD 340 (366)
Q Consensus 298 EsGeL~kLL~~~~~~~~~~~C~~CGg~rfvpC~~C~G-S~Kv~~ 340 (366)
.|+++| ++.. ....|..|| |..|.+ .||++.
T Consensus 71 ---piE~~l-~~~v--~~s~C~~c~------~~~g~~~~CRt~~ 102 (120)
T PF10865_consen 71 ---PIEDLL-GAEV--GESPCESCG------CSCGGDVDCRTLE 102 (120)
T ss_pred ---ehhHhh-CCcc--ccCcccccc------cccCCCccceeEE
Confidence 566677 3333 345687776 344544 367653
No 242
>PRK11752 putative S-transferase; Provisional
Probab=59.71 E-value=58 Score=31.17 Aligned_cols=76 Identities=9% Similarity=0.146 Sum_probs=48.6
Q ss_pred CCCCCCcEEEEEeCCCCCCCCCchHHHHHHHHHhC------CCcEEEEEccCCH--HHHHHHHHHHcCCCCCCcccEEEe
Q 017790 211 TKESNNKIVIYFTSLRGIRRTYEDCCSVRMIFKSY------RVGVDERDISMDS--SYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 211 ~~~~~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~------gV~ydErDVsmD~--e~reEL~elLg~~tg~~TVPqVFV 282 (366)
.+.+.+.+.||+.. ...|.+|+-+|+.+ |++|+.+.|+... ....++.+. ....+||.+..
T Consensus 38 ~~~~~~~~~Ly~~~-------s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~i----NP~GkVP~Lv~ 106 (264)
T PRK11752 38 LPVGKHPLQLYSLG-------TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEI----NPNSKIPALLD 106 (264)
T ss_pred cCCCCCCeEEecCC-------CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhh----CCCCCCCEEEe
Confidence 35566689999742 35788999999886 8889887775432 122344443 23568999977
Q ss_pred CC----EEEccchHHHHHH
Q 017790 283 RG----KHIGGAEEIKQLN 297 (366)
Q Consensus 283 dG----~~IGGaDEv~~L~ 297 (366)
++ ..|-....+.++.
T Consensus 107 ~dg~~~~~L~ES~AIl~YL 125 (264)
T PRK11752 107 RSGNPPIRVFESGAILLYL 125 (264)
T ss_pred CCCCCCeEEEcHHHHHHHH
Confidence 52 4555555555533
No 243
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=59.66 E-value=24 Score=27.48 Aligned_cols=56 Identities=16% Similarity=0.304 Sum_probs=31.2
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHH----Hh----CCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe--CCE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIF----KS----YRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI--RGK 285 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL----~~----~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV--dG~ 285 (366)
+|.|+++||+ .|.++...| +. .++.+..+|++.+ ...++.+.++ ...+|.+++ +|+
T Consensus 21 ~v~f~a~wC~------~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~----i~~~Pt~~~~~~g~ 86 (104)
T cd02997 21 LVMFYAPWCG------HCKKMKPEFTKAATELKEDGKGVLAAVDCTKP--EHDALKEEYN----VKGFPTFKYFENGK 86 (104)
T ss_pred EEEEECCCCH------HHHHhCHHHHHHHHHHhhCCceEEEEEECCCC--ccHHHHHhCC----CccccEEEEEeCCC
Confidence 5677777664 888654322 22 2255666777653 1234555554 457887743 444
No 244
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=59.45 E-value=6.9 Score=33.94 Aligned_cols=24 Identities=38% Similarity=0.720 Sum_probs=18.2
Q ss_pred ccccccCCccceeeCCCCCCCcee
Q 017790 315 VSVCESCGDARFVPCSHCCGSRKV 338 (366)
Q Consensus 315 ~~~C~~CGg~rfvpC~~C~GS~Kv 338 (366)
...|..|.|.+.++|..|.|+..+
T Consensus 75 ~~~C~~C~G~Gk~~C~~C~G~G~~ 98 (111)
T PLN03165 75 VSKCINCDGAGSLTCTTCQGSGIQ 98 (111)
T ss_pred EEECCCCCCcceeeCCCCCCCEEE
Confidence 346888888888888888888654
No 245
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=59.15 E-value=6.5 Score=27.30 Aligned_cols=28 Identities=29% Similarity=0.799 Sum_probs=20.3
Q ss_pred eeCCCCCCCceeeec---CCCccccCCcccc
Q 017790 327 VPCSHCCGSRKVFDE---EDGQLRRCTNCNE 354 (366)
Q Consensus 327 vpC~~C~GS~Kv~~e---~~~~~~rC~~CNE 354 (366)
+.|+.|+-...+-++ ..+..+||+.|++
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGH 33 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCC
Confidence 679999888776443 2345789999975
No 246
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=58.76 E-value=68 Score=30.48 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=17.3
Q ss_pred CCCcccEEEe-CCEEEccchHHH
Q 017790 273 KAITLPQVFI-RGKHIGGAEEIK 294 (366)
Q Consensus 273 g~~TVPqVFV-dG~~IGGaDEv~ 294 (366)
|....|.+++ ||+.+.|+....
T Consensus 199 gi~gTPtiv~~~G~~~~G~~~~~ 221 (232)
T PRK10877 199 GVQGTPAIVLSNGTLVPGYQGPK 221 (232)
T ss_pred CCccccEEEEcCCeEeeCCCCHH
Confidence 4567899888 999999985543
No 247
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=58.63 E-value=17 Score=31.66 Aligned_cols=57 Identities=14% Similarity=0.290 Sum_probs=34.2
Q ss_pred cEEE-EEeCCCCCCCCCchHHHHHHHHHhC-----C-CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccE--EEeCCEEE
Q 017790 217 KIVI-YFTSLRGIRRTYEDCCSVRMIFKSY-----R-VGVDERDISMDSSYRKELQDLLGVEGKAITLPQ--VFIRGKHI 287 (366)
Q Consensus 217 kVVV-YTTSL~gIRKT~~dC~raK~IL~~~-----g-V~ydErDVsmD~e~reEL~elLg~~tg~~TVPq--VFVdG~~I 287 (366)
.||| |+.+||+ +|..+--+|..+ + +.+-.+||+..++ +.+.++ . ...|. +|-+|+||
T Consensus 16 lVVVdF~a~WC~------pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d----va~~y~-I---~amPtfvffkngkh~ 81 (114)
T cd02986 16 VLVLRFGRDEDA------VCLQLDDILSKTSHDLSKMASIYLVDVDKVPV----YTQYFD-I---SYIPSTIFFFNGQHM 81 (114)
T ss_pred EEEEEEeCCCCh------hHHHHHHHHHHHHHHccCceEEEEEeccccHH----HHHhcC-c---eeCcEEEEEECCcEE
Confidence 3444 5555554 999876666553 3 6678889986554 333333 1 22343 56788887
No 248
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=58.58 E-value=21 Score=29.07 Aligned_cols=53 Identities=13% Similarity=0.278 Sum_probs=30.5
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHh-------CCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEE
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKS-------YRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVF 281 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~-------~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVF 281 (366)
-+|.|.++||+ .|.++..+|+. .++.+-.+|++.+. .....+.++ ...+|.++
T Consensus 24 vlv~f~a~wC~------~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~~~~~~~~----v~~~Pti~ 83 (109)
T cd02993 24 TLVVLYAPWCP------FCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--REFAKEELQ----LKSFPTIL 83 (109)
T ss_pred EEEEEECCCCH------HHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hhhHHhhcC----CCcCCEEE
Confidence 36677777764 89976655543 24566677776421 111222343 56789774
No 249
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=57.86 E-value=77 Score=28.64 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=22.8
Q ss_pred CCCcEEEEEeCCCCCCCCCchHHHHHHHHH--hCCCcEEEEEc
Q 017790 214 SNNKIVIYFTSLRGIRRTYEDCCSVRMIFK--SYRVGVDERDI 254 (366)
Q Consensus 214 ~~~kVVVYTTSL~gIRKT~~dC~raK~IL~--~~gV~ydErDV 254 (366)
+...|++|+-.. |++|.++...|. ..+|.+..+-+
T Consensus 77 ~~~~i~~f~D~~------Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 77 GKRVVYVFTDPD------CPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred CCEEEEEEECCC------CccHHHHHHHHhhccCceEEEEEEc
Confidence 455677777554 459998887776 34566655544
No 250
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=57.62 E-value=6.6 Score=26.85 Aligned_cols=10 Identities=30% Similarity=0.886 Sum_probs=7.2
Q ss_pred ccccCCcccc
Q 017790 345 QLRRCTNCNE 354 (366)
Q Consensus 345 ~~~rC~~CNE 354 (366)
...+||+|..
T Consensus 25 ~~~~CP~Cg~ 34 (41)
T smart00834 25 PLATCPECGG 34 (41)
T ss_pred CCCCCCCCCC
Confidence 4567888876
No 251
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=57.43 E-value=7.7 Score=40.06 Aligned_cols=31 Identities=35% Similarity=0.757 Sum_probs=23.3
Q ss_pred cceeeCCCCCCCceeeecCCCccccCCccccCcc
Q 017790 324 ARFVPCSHCCGSRKVFDEEDGQLRRCTNCNENGL 357 (366)
Q Consensus 324 ~rfvpC~~C~GS~Kv~~e~~~~~~rC~~CNENGL 357 (366)
.|.+.|..|+||- .+.+.....|+.||-+|-
T Consensus 140 ~~~~~C~~C~GsG---ak~gt~~~tC~tC~G~G~ 170 (371)
T COG0484 140 TRSVTCSTCHGSG---AKPGTDPKTCPTCNGSGQ 170 (371)
T ss_pred ceeeECCcCCCCC---CCCCCCCCcCCCCCCcCe
Confidence 4568999999992 122235789999999995
No 252
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=56.54 E-value=58 Score=31.68 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=50.5
Q ss_pred CCCCCch-HHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchH---HHHHHhcCcHH
Q 017790 228 IRRTYED-CCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEE---IKQLNETGDLA 303 (366)
Q Consensus 228 IRKT~~d-C~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDE---v~~L~EsGeL~ 303 (366)
+.+++.+ =.+++..|+.+|+.+.+.+++..+ .+++...+.+ .+.-||||... ++.|.|.|.+.
T Consensus 43 ~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~--~~~Ie~~l~~-----------~d~IyVgGGNTF~LL~~lke~gld~ 109 (224)
T COG3340 43 VDSEDDFYVEKVRNALAKLGLEVSELHLSKPP--LAAIENKLMK-----------ADIIYVGGGNTFNLLQELKETGLDD 109 (224)
T ss_pred cccchHHHHHHHHHHHHHcCCeeeeeeccCCC--HHHHHHhhhh-----------ccEEEECCchHHHHHHHHHHhCcHH
Confidence 3455544 448999999999999999998764 4677777753 35567777655 56678888777
Q ss_pred HHhcCCCC
Q 017790 304 MLLKGFPV 311 (366)
Q Consensus 304 kLL~~~~~ 311 (366)
-+.+...+
T Consensus 110 iIr~~vk~ 117 (224)
T COG3340 110 IIRERVKA 117 (224)
T ss_pred HHHHHHHc
Confidence 66665443
No 253
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=55.94 E-value=44 Score=26.70 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=32.3
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHh-------C--CCcEEEEEccCCHH----------------HHHHHHHHHcCC
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKS-------Y--RVGVDERDISMDSS----------------YRKELQDLLGVE 271 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~-------~--gV~ydErDVsmD~e----------------~reEL~elLg~~ 271 (366)
.|++|+..+ |++|.++...|.. + ++.+...++..+.. ...+|.+.++
T Consensus 8 ~v~~F~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 79 (112)
T PF13098_consen 8 IVVVFTDPW------CPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG-- 79 (112)
T ss_dssp EEEEEE-TT-------HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred EEEEEECCC------CHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC--
Confidence 355565544 5699976544431 1 34455666654331 1134444444
Q ss_pred CCCCcccEEEe-C--CE---EEccchHH
Q 017790 272 GKAITLPQVFI-R--GK---HIGGAEEI 293 (366)
Q Consensus 272 tg~~TVPqVFV-d--G~---~IGGaDEv 293 (366)
...+|.+++ + |+ .+-|+-.-
T Consensus 80 --v~gtPt~~~~d~~G~~v~~~~G~~~~ 105 (112)
T PF13098_consen 80 --VNGTPTIVFLDKDGKIVYRIPGYLSP 105 (112)
T ss_dssp ----SSSEEEECTTTSCEEEEEESS--H
T ss_pred --CCccCEEEEEcCCCCEEEEecCCCCH
Confidence 567788765 4 65 45565443
No 254
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=55.59 E-value=32 Score=33.27 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=46.9
Q ss_pred CCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHHh
Q 017790 231 TYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNE 298 (366)
Q Consensus 231 T~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~E 298 (366)
.|+.|+++-+.|..+++.|...-|++... =+++++... ...+|.|-.||+.+-..+.+.+..|
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~k-p~~f~~~sp----~~~~P~l~~d~~~~tDs~~Ie~~Le 82 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRK-PEWFLDISP----GGKPPVLKFDEKWVTDSDKIEEFLE 82 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCC-cHHHHhhCC----CCCCCeEEeCCceeccHHHHHHHHH
Confidence 46689999999999999987655554432 135555544 5689999999999999988876544
No 255
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=54.56 E-value=32 Score=25.75 Aligned_cols=65 Identities=22% Similarity=0.226 Sum_probs=35.9
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHh------CCCcEEEEEccCCHH-------------------HHHHHHHHH----
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKS------YRVGVDERDISMDSS-------------------YRKELQDLL---- 268 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~------~gV~ydErDVsmD~e-------------------~reEL~elL---- 268 (366)
|++|+...| ++|..+...|+. .++.+..+.+..... ...++.+.+
T Consensus 1 i~~f~d~~C------p~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (98)
T cd02972 1 IVEFFDPLC------PYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTA 74 (98)
T ss_pred CeEEECCCC------HhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 456776655 588866555544 346677776544321 112222221
Q ss_pred -cCCCCCCcccEEEeCC-EEEc
Q 017790 269 -GVEGKAITLPQVFIRG-KHIG 288 (366)
Q Consensus 269 -g~~tg~~TVPqVFVdG-~~IG 288 (366)
....|...+|.++|+| .+.|
T Consensus 75 ~~~~~g~~g~Pt~v~~~~~~~~ 96 (98)
T cd02972 75 LARALGVTGTPTFVVNGEKYSG 96 (98)
T ss_pred HHHHcCCCCCCEEEECCEEcCC
Confidence 1122467889999999 5544
No 256
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=54.51 E-value=11 Score=46.01 Aligned_cols=51 Identities=20% Similarity=0.386 Sum_probs=33.9
Q ss_pred EEccchHHHHHHhcCcHHHHhcCCCCc-----ccccccccCCccce------------eeCCCCCCCce
Q 017790 286 HIGGAEEIKQLNETGDLAMLLKGFPVV-----NAVSVCESCGDARF------------VPCSHCCGSRK 337 (366)
Q Consensus 286 ~IGGaDEv~~L~EsGeL~kLL~~~~~~-----~~~~~C~~CGg~rf------------vpC~~C~GS~K 337 (366)
|+|=+|++++|.-+=...+.- ++.+. .+.+.|+.|+|.+. ++|+.|+|.+.
T Consensus 1574 Y~g~fd~IR~lFA~~~~ak~r-g~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1574 YFDIAPSLRNFYASLTQAKAL-NISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRI 1641 (1809)
T ss_pred hhhhHHHHHHHHhcCHHHHHc-CCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCC
Confidence 444567887777654444433 22221 14678999999986 68999999876
No 257
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=52.70 E-value=36 Score=28.88 Aligned_cols=55 Identities=13% Similarity=0.238 Sum_probs=33.0
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhC------CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEE--EeCCE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSY------RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQV--FIRGK 285 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~------gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqV--FVdG~ 285 (366)
+|.|+.+||+ +|..++..|+.. .+.+-.+|++.+.. ...+.++ ...+|.+ |.+|+
T Consensus 33 lV~FyA~WC~------~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~---l~~~~~~----I~~~PTl~lf~~g~ 95 (113)
T cd03006 33 LVMYYAPWDA------QSQAARQEFEQVAQKLSDQVLFVAINCWWPQG---KCRKQKH----FFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEECCCCH------HHHHHHHHHHHHHHHhcCCeEEEEEECCCChH---HHHHhcC----CcccCEEEEEECCc
Confidence 6778888886 898766555543 25677788875532 1223333 3566765 55654
No 258
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=51.75 E-value=30 Score=28.84 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=29.3
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHh----C-----CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKS----Y-----RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~----~-----gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV 282 (366)
||.|+++||+ .|......|+. + .+.+..+|.+.+. ..++.+.++ ...+|++++
T Consensus 23 vV~f~a~wC~------~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~----i~~~Pt~~l 84 (114)
T cd02992 23 LVEFYASWCG------HCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFG----VTGYPTLRY 84 (114)
T ss_pred EEEEECCCCH------HHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCC----CCCCCEEEE
Confidence 5667777765 78855444332 1 1455556654332 234545454 467898865
No 259
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=51.70 E-value=6.3 Score=29.31 Aligned_cols=34 Identities=35% Similarity=0.709 Sum_probs=23.1
Q ss_pred CccceeeCCCCCCCcee-----eecCCCccccCCccccC
Q 017790 322 GDARFVPCSHCCGSRKV-----FDEEDGQLRRCTNCNEN 355 (366)
Q Consensus 322 Gg~rfvpC~~C~GS~Kv-----~~e~~~~~~rC~~CNEN 355 (366)
||.=|+.|.+|.--=.+ ..+.....+||.+|.|-
T Consensus 2 GGAPFv~C~~C~~lLqlP~~~~~~~k~~~klrCGaCs~v 40 (46)
T PF11331_consen 2 GGAPFVVCSSCFELLQLPAKFSLSKKNQQKLRCGACSEV 40 (46)
T ss_pred CCCCEeECccHHHHHcCCCccCCCccceeEEeCCCCcee
Confidence 78899999999764332 11222346799999873
No 260
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=51.61 E-value=36 Score=29.23 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=39.3
Q ss_pred CCcEEEEEeCCCCCCCCCchHHHHH----HHHHhCC--CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe--CCEE
Q 017790 215 NNKIVIYFTSLRGIRRTYEDCCSVR----MIFKSYR--VGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI--RGKH 286 (366)
Q Consensus 215 ~~kVVVYTTSL~gIRKT~~dC~raK----~IL~~~g--V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV--dG~~ 286 (366)
..+|+||-=|++ |.-...|. +.+.... +++.++||-.+...-+++.+.++- .-.=||+++ +|+-
T Consensus 19 ~~~~~iFKHSt~-----C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V---~HeSPQ~ili~~g~~ 90 (105)
T PF11009_consen 19 EKPVLIFKHSTR-----CPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGV---KHESPQVILIKNGKV 90 (105)
T ss_dssp -SEEEEEEE-TT------HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT-------SSEEEEEETTEE
T ss_pred cCcEEEEEeCCC-----ChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCC---CcCCCcEEEEECCEE
Confidence 456889977652 22333333 3444332 899999999888888999999983 346699875 7776
Q ss_pred E
Q 017790 287 I 287 (366)
Q Consensus 287 I 287 (366)
|
T Consensus 91 v 91 (105)
T PF11009_consen 91 V 91 (105)
T ss_dssp E
T ss_pred E
Confidence 5
No 261
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=50.68 E-value=43 Score=32.67 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=34.2
Q ss_pred CcEEEEEeCCCCCCCCCchHHHHH----HHHHhCCCcEEEEEccCCHH-------HHHHHHHHHcCCCCCCcccEEEe
Q 017790 216 NKIVIYFTSLRGIRRTYEDCCSVR----MIFKSYRVGVDERDISMDSS-------YRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 216 ~kVVVYTTSL~gIRKT~~dC~raK----~IL~~~gV~ydErDVsmD~e-------~reEL~elLg~~tg~~TVPqVFV 282 (366)
..||.|+.++|+ .|.+.. .+-+.+|+.+..++++.+.. .-..+.+.++ ...+|.+|+
T Consensus 168 ~~Lv~F~AswCp------~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~g----V~~vPtl~L 235 (271)
T TIGR02740 168 SGLFFFFKSDCP------YCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLK----IRTVPAVFL 235 (271)
T ss_pred eEEEEEECCCCc------cHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcC----CCcCCeEEE
Confidence 345666666664 898644 44456787777777764320 0123445554 578999975
No 262
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=50.33 E-value=12 Score=27.91 Aligned_cols=28 Identities=36% Similarity=0.860 Sum_probs=18.0
Q ss_pred eeeCCCCCCCceeeecCCC-------ccccCCcccc
Q 017790 326 FVPCSHCCGSRKVFDEEDG-------QLRRCTNCNE 354 (366)
Q Consensus 326 fvpC~~C~GS~Kv~~e~~~-------~~~rC~~CNE 354 (366)
..||+.| |+..+..+... -++.|..|+-
T Consensus 3 LkPCPFC-G~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 3 LKPCPFC-GSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CcCCCCC-CCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 3589999 87766443211 3567888864
No 263
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=49.57 E-value=60 Score=25.97 Aligned_cols=51 Identities=18% Similarity=0.372 Sum_probs=27.9
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHH----HhC---C--CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIF----KSY---R--VGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL----~~~---g--V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV 282 (366)
+|.|+++||+ .|.+....| +.+ + +.+...|++... ++.+.++ ..++|.+++
T Consensus 19 lv~f~a~wC~------~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~----I~~~Pt~~l 78 (104)
T cd03000 19 LVDFYAPWCG------HCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS----SIASEFG----VRGYPTIKL 78 (104)
T ss_pred EEEEECCCCH------HHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH----hHHhhcC----CccccEEEE
Confidence 4556666664 888544333 222 3 445556665433 4444444 567898854
No 264
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=49.53 E-value=1.2e+02 Score=27.01 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=12.6
Q ss_pred CcEEEEEeCCCCCCCCCchHHHHHHHHH
Q 017790 216 NKIVIYFTSLRGIRRTYEDCCSVRMIFK 243 (366)
Q Consensus 216 ~kVVVYTTSL~gIRKT~~dC~raK~IL~ 243 (366)
..|+||+.+ ..|+.|.+..-.|.
T Consensus 26 k~vlL~FwA-----sWCppCr~e~P~L~ 48 (146)
T cd03008 26 RVLLLFFGA-----VVSPQCQLFAPKLK 48 (146)
T ss_pred CEEEEEEEC-----CCChhHHHHHHHHH
Confidence 346666543 13458997555553
No 265
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=48.36 E-value=7.1 Score=34.25 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCcEEEEEcc-CCHHHHHHHHHHHcC--CCCCCcccEEEeCCE-EEccchHHHHHH
Q 017790 236 CSVRMIFKSYRVGVDERDIS-MDSSYRKELQDLLGV--EGKAITLPQVFIRGK-HIGGAEEIKQLN 297 (366)
Q Consensus 236 ~raK~IL~~~gV~ydErDVs-mD~e~reEL~elLg~--~tg~~TVPqVFVdG~-~IGGaDEv~~L~ 297 (366)
..+..++...|++.++.+-. .+.+.++++++.... ..|...+|.++|+|+ .+-|.+.+..|.
T Consensus 124 ~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l~ 189 (193)
T PF01323_consen 124 DVLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDELE 189 (193)
T ss_dssp HHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHHH
Confidence 45778888888876554432 334455555432211 224789999999999 788988875443
No 266
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=48.27 E-value=39 Score=26.25 Aligned_cols=51 Identities=14% Similarity=0.376 Sum_probs=28.9
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhC--------CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSY--------RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~--------gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV 282 (366)
-+|.|+++||+ .|.+....|+.. .+.+..+|.+.+ ++...++ ...+|.+++
T Consensus 21 ~~v~f~~~~C~------~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~----~~~~Pt~~~ 79 (104)
T cd02995 21 VLVEFYAPWCG------HCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEFV----VDGFPTILF 79 (104)
T ss_pred EEEEEECCCCH------HHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhcc----CCCCCEEEE
Confidence 35667777765 888654443321 355666776542 2333333 368898764
No 267
>PHA00626 hypothetical protein
Probab=48.11 E-value=13 Score=28.96 Aligned_cols=17 Identities=24% Similarity=0.614 Sum_probs=10.0
Q ss_pred cccCCccceeeCCCCCC
Q 017790 318 CESCGDARFVPCSHCCG 334 (366)
Q Consensus 318 C~~CGg~rfvpC~~C~G 334 (366)
|..||-.-.+.|..|++
T Consensus 3 CP~CGS~~Ivrcg~cr~ 19 (59)
T PHA00626 3 CPKCGSGNIAKEKTMRG 19 (59)
T ss_pred CCCCCCceeeeeceecc
Confidence 56666655555555555
No 268
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=47.99 E-value=1e+02 Score=27.58 Aligned_cols=55 Identities=9% Similarity=0.121 Sum_probs=32.7
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHhC-----C-CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEE-Ee-CCE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKSY-----R-VGVDERDISMDSSYRKELQDLLGVEGKAITLPQV-FI-RGK 285 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~~-----g-V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqV-FV-dG~ 285 (366)
||-|+.+||| +|..+--+|+.. + +.+..+||+..+ ++.+.++ .. ..+|.+ |. +|+
T Consensus 27 VvdF~A~WCg------pCk~m~p~l~~la~~~~~~~~~~kVDVDe~~----dla~~y~-I~--~~~t~~~ffk~g~ 89 (142)
T PLN00410 27 VIRFGHDWDE------TCMQMDEVLASVAETIKNFAVIYLVDITEVP----DFNTMYE-LY--DPCTVMFFFRNKH 89 (142)
T ss_pred EEEEECCCCh------hHHHHHHHHHHHHHHcCCceEEEEEECCCCH----HHHHHcC-cc--CCCcEEEEEECCe
Confidence 4557777775 999876666543 2 456788998665 4445444 21 244555 44 554
No 269
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=47.99 E-value=65 Score=29.85 Aligned_cols=54 Identities=9% Similarity=0.098 Sum_probs=32.6
Q ss_pred cEEE-EEeCCCCCCCCCchHHHHHHHHHh----C-CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEE--eCCEEE
Q 017790 217 KIVI-YFTSLRGIRRTYEDCCSVRMIFKS----Y-RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVF--IRGKHI 287 (366)
Q Consensus 217 kVVV-YTTSL~gIRKT~~dC~raK~IL~~----~-gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVF--VdG~~I 287 (366)
.||| |+.+|| ..|..+..+|+. + .+.|..+|++. ..+.++ ...+|.|+ -+|+.+
T Consensus 104 ~VVV~Fya~wc------~~C~~m~~~l~~LA~k~~~vkFvkI~ad~-------~~~~~~----i~~lPTlliyk~G~~v 165 (192)
T cd02988 104 WVVVHLYKDGI------PLCRLLNQHLSELARKFPDTKFVKIISTQ-------CIPNYP----DKNLPTILVYRNGDIV 165 (192)
T ss_pred EEEEEEECCCC------chHHHHHHHHHHHHHHCCCCEEEEEEhHH-------hHhhCC----CCCCCEEEEEECCEEE
Confidence 4655 555555 489976666554 3 36788888742 123343 57899875 477644
No 270
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=47.91 E-value=78 Score=24.98 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=40.7
Q ss_pred CchHHHHHHHHHhCCCc---EEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe-CCEEEccchHHHHHH
Q 017790 232 YEDCCSVRMIFKSYRVG---VDERDISMDSSYRKELQDLLGVEGKAITLPQVFI-RGKHIGGAEEIKQLN 297 (366)
Q Consensus 232 ~~dC~raK~IL~~~gV~---ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV-dG~~IGGaDEv~~L~ 297 (366)
-.+|-++..+|+-.+.+ |+.+-.+ +.. ......+|.+.. +|+.|.|+.++.+..
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~vv~s~-n~~-----------~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFKVVPSN-NPW-----------LSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEEEEEcC-CCC-----------cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 46899999999999998 5554433 221 122468999999 999999999998753
No 271
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=47.73 E-value=28 Score=29.49 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=16.9
Q ss_pred CCCcccEEEeCCEEEccchHHH
Q 017790 273 KAITLPQVFIRGKHIGGAEEIK 294 (366)
Q Consensus 273 g~~TVPqVFVdG~~IGGaDEv~ 294 (366)
+...+|.+||||+++.|.-.+.
T Consensus 133 ~i~~tPt~~inG~~~~~~~~~~ 154 (162)
T PF13462_consen 133 GITGTPTFFINGKYVVGPYTIE 154 (162)
T ss_dssp T-SSSSEEEETTCEEETTTSHH
T ss_pred CCccccEEEECCEEeCCCCCHH
Confidence 3568999999999998765554
No 272
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=46.33 E-value=66 Score=30.01 Aligned_cols=67 Identities=12% Similarity=0.256 Sum_probs=42.0
Q ss_pred EEEEEeCCCCCCCCCchHHH----HHHHHHhCCCcEEEEEccCCH-----H----HHHHHHHHHcCCCCCCcccEEEe--
Q 017790 218 IVIYFTSLRGIRRTYEDCCS----VRMIFKSYRVGVDERDISMDS-----S----YRKELQDLLGVEGKAITLPQVFI-- 282 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~r----aK~IL~~~gV~ydErDVsmD~-----e----~reEL~elLg~~tg~~TVPqVFV-- 282 (366)
||+|..+||+ +|.+ ++++-+.+|+.+.-+.++.+. - ....+.+.++. -...+|..|+
T Consensus 73 lV~FwaswCp------~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~--~~~~iPttfLId 144 (181)
T PRK13728 73 VVLFMQGHCP------YCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPN--IPVATPTTFLVN 144 (181)
T ss_pred EEEEECCCCH------hHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCC--CCCCCCeEEEEe
Confidence 8889888774 8985 577888889887776665331 0 12334445541 1258999986
Q ss_pred -CCE-----EEccchH
Q 017790 283 -RGK-----HIGGAEE 292 (366)
Q Consensus 283 -dG~-----~IGGaDE 292 (366)
+|+ ++|..++
T Consensus 145 ~~G~i~~~~~~G~~~~ 160 (181)
T PRK13728 145 VNTLEALPLLQGATDA 160 (181)
T ss_pred CCCcEEEEEEECCCCH
Confidence 552 4566653
No 273
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=45.19 E-value=16 Score=43.24 Aligned_cols=43 Identities=28% Similarity=0.865 Sum_probs=29.8
Q ss_pred ccccccCCccce-eeCCCCCCCceeeecCCCccccCCcccc------CccccCCCCC
Q 017790 315 VSVCESCGDARF-VPCSHCCGSRKVFDEEDGQLRRCTNCNE------NGLIRCPACS 364 (366)
Q Consensus 315 ~~~C~~CGg~rf-vpC~~C~GS~Kv~~e~~~~~~rC~~CNE------NGLirCp~C~ 364 (366)
...|..||..-+ .-|+.|...... ...|+.|+- +|-.+||.|.
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~-------vy~CPsCGaev~~des~a~~CP~CG 716 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEP-------VYVCPDCGAEVPPDESGRVECPRCD 716 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCC-------ceeCccCCCccCCCccccccCCCCC
Confidence 468999997533 589999888532 227888865 3345788885
No 274
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=45.03 E-value=35 Score=33.34 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=38.2
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCc--EEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEE
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVG--VDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHI 287 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~--ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~I 287 (366)
.|-||+ -|||-.|...-..|+++|+- +..+|-+.-. ..++. ++.-++|-||+||+.+
T Consensus 12 ~VkI~~------HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~------f~~~~--~~V~SvP~Vf~DGel~ 70 (265)
T COG5494 12 EVKIFT------HKTCVSSYMLFEYLENKGLLGKVKIIDAELPP------FLAFE--KGVISVPSVFIDGELV 70 (265)
T ss_pred EEEEEE------ecchHHHHHHHHHHHhcCCCCCceEEEcCCCh------HHHhh--cceeecceEEEcCeEE
Confidence 466776 47788899999999998863 4444443322 12222 2356899999999987
No 275
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=44.81 E-value=91 Score=25.82 Aligned_cols=9 Identities=22% Similarity=0.468 Sum_probs=6.2
Q ss_pred CCcccEEEe
Q 017790 274 AITLPQVFI 282 (366)
Q Consensus 274 ~~TVPqVFV 282 (366)
...+|.+||
T Consensus 97 v~~~P~~~l 105 (131)
T cd03009 97 IEGIPTLII 105 (131)
T ss_pred CCCCCEEEE
Confidence 466787765
No 276
>PRK04023 DNA polymerase II large subunit; Validated
Probab=43.25 E-value=20 Score=41.60 Aligned_cols=43 Identities=26% Similarity=0.687 Sum_probs=30.9
Q ss_pred ccccccCCccc-eeeCCCCCCCceeeecCCCccccCCccccCcc-ccCCCCC
Q 017790 315 VSVCESCGDAR-FVPCSHCCGSRKVFDEEDGQLRRCTNCNENGL-IRCPACS 364 (366)
Q Consensus 315 ~~~C~~CGg~r-fvpC~~C~GS~Kv~~e~~~~~~rC~~CNENGL-irCp~C~ 364 (366)
...|..||-.. +..|++|+.- + ....+|+.|-..+- -.||.|.
T Consensus 626 ~RfCpsCG~~t~~frCP~CG~~----T---e~i~fCP~CG~~~~~y~CPKCG 670 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFCGTH----T---EPVYRCPRCGIEVEEDECEKCG 670 (1121)
T ss_pred CccCCCCCCcCCcccCCCCCCC----C---CcceeCccccCcCCCCcCCCCC
Confidence 45799999773 3589999876 1 23568999976543 5688886
No 277
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=42.70 E-value=15 Score=25.35 Aligned_cols=24 Identities=33% Similarity=0.746 Sum_probs=11.0
Q ss_pred eCCCCCCCceeeecCCCccccCCccc
Q 017790 328 PCSHCCGSRKVFDEEDGQLRRCTNCN 353 (366)
Q Consensus 328 pC~~C~GS~Kv~~e~~~~~~rC~~CN 353 (366)
.|..|++-.=+.++. ..+.|..|.
T Consensus 5 ~C~~C~~~~i~~~~~--~~~~C~~Cg 28 (33)
T PF08792_consen 5 KCSKCGGNGIVNKED--DYEVCIFCG 28 (33)
T ss_pred EcCCCCCCeEEEecC--CeEEcccCC
Confidence 455555553332433 234566554
No 278
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=42.57 E-value=18 Score=32.48 Aligned_cols=9 Identities=22% Similarity=0.778 Sum_probs=4.8
Q ss_pred ccccCCccc
Q 017790 317 VCESCGDAR 325 (366)
Q Consensus 317 ~C~~CGg~r 325 (366)
.|..|.|.+
T Consensus 112 ~C~~C~Gs~ 120 (147)
T cd03031 112 PCSECNGSC 120 (147)
T ss_pred ECCCCCCcc
Confidence 555555544
No 279
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=42.13 E-value=18 Score=25.56 Aligned_cols=24 Identities=38% Similarity=0.790 Sum_probs=15.4
Q ss_pred eCCCCCCCceeeecCCCccccCCcc
Q 017790 328 PCSHCCGSRKVFDEEDGQLRRCTNC 352 (366)
Q Consensus 328 pC~~C~GS~Kv~~e~~~~~~rC~~C 352 (366)
.|+.|..+.-++... .+..-|+.|
T Consensus 2 ~Cp~Cg~~~~~~D~~-~g~~vC~~C 25 (43)
T PF08271_consen 2 KCPNCGSKEIVFDPE-RGELVCPNC 25 (43)
T ss_dssp SBTTTSSSEEEEETT-TTEEEETTT
T ss_pred CCcCCcCCceEEcCC-CCeEECCCC
Confidence 477887766345443 346688888
No 280
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=41.89 E-value=1.2e+02 Score=25.48 Aligned_cols=9 Identities=11% Similarity=0.434 Sum_probs=6.0
Q ss_pred CCcccEEEe
Q 017790 274 AITLPQVFI 282 (366)
Q Consensus 274 ~~TVPqVFV 282 (366)
...+|.+||
T Consensus 97 v~~iPt~~l 105 (132)
T cd02964 97 VEGIPTLVV 105 (132)
T ss_pred CCCCCEEEE
Confidence 467788763
No 281
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=41.69 E-value=1.6e+02 Score=26.21 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=28.7
Q ss_pred HHHHhCC---CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEE--EeCCEEEccc
Q 017790 240 MIFKSYR---VGVDERDISMDSSYRKELQDLLGVEGKAITLPQV--FIRGKHIGGA 290 (366)
Q Consensus 240 ~IL~~~g---V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqV--FVdG~~IGGa 290 (366)
++.+.++ +.+..+|++.++ +|...++ ...+|.+ |=||+++|-.
T Consensus 60 ELa~e~~~~~v~~akVDiD~~~----~LA~~fg----V~siPTLl~FkdGk~v~~i 107 (132)
T PRK11509 60 ELLREFPDYTWQVAIADLEQSE----AIGDRFG----VFRFPATLVFTGGNYRGVL 107 (132)
T ss_pred HHHHHhcCCceEEEEEECCCCH----HHHHHcC----CccCCEEEEEECCEEEEEE
Confidence 4445544 678888887654 5666665 5788877 4599888644
No 282
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=41.22 E-value=17 Score=26.44 Aligned_cols=26 Identities=19% Similarity=0.519 Sum_probs=12.9
Q ss_pred eCCCCCCCceeeecCCCccccCCccccCc
Q 017790 328 PCSHCCGSRKVFDEEDGQLRRCTNCNENG 356 (366)
Q Consensus 328 pC~~C~GS~Kv~~e~~~~~~rC~~CNENG 356 (366)
.|..|+..-. -+.....||++|.-.=
T Consensus 4 ~C~~Cg~~~~---~~~~~~irC~~CG~rI 29 (44)
T smart00659 4 ICGECGRENE---IKSKDVVRCRECGYRI 29 (44)
T ss_pred ECCCCCCEee---cCCCCceECCCCCceE
Confidence 4566655311 1123456777776543
No 283
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=41.04 E-value=16 Score=24.31 Aligned_cols=25 Identities=32% Similarity=0.712 Sum_probs=13.6
Q ss_pred eCCCCCCCceeeecCCCccccCCcccc
Q 017790 328 PCSHCCGSRKVFDEEDGQLRRCTNCNE 354 (366)
Q Consensus 328 pC~~C~GS~Kv~~e~~~~~~rC~~CNE 354 (366)
-|..|.+..+.... +-.++|+.|+.
T Consensus 5 fC~~CG~~t~~~~~--g~~r~C~~Cg~ 29 (32)
T PF09297_consen 5 FCGRCGAPTKPAPG--GWARRCPSCGH 29 (32)
T ss_dssp B-TTT--BEEE-SS--SS-EEESSSS-
T ss_pred ccCcCCccccCCCC--cCEeECCCCcC
Confidence 37778777766544 35789999963
No 284
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=40.91 E-value=15 Score=38.06 Aligned_cols=55 Identities=20% Similarity=0.517 Sum_probs=40.9
Q ss_pred CCEEEccchHHHHHHhcCcHHHHh--cCCCCcccccccccCCcc-----------ceeeCCCCCCCce
Q 017790 283 RGKHIGGAEEIKQLNETGDLAMLL--KGFPVVNAVSVCESCGDA-----------RFVPCSHCCGSRK 337 (366)
Q Consensus 283 dG~~IGGaDEv~~L~EsGeL~kLL--~~~~~~~~~~~C~~CGg~-----------rfvpC~~C~GS~K 337 (366)
+|..+-|.+++.+..+.|-.+.|| +.+........|..||-. .+..|+.|++...
T Consensus 290 ~G~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 357 (409)
T TIGR00108 290 DGLACYGEDEVLKALDLGAVETLIVSEDLEYIRVTYKCAECGEVIEKTVRELKDKKFAICPACGQEMD 357 (409)
T ss_pred CCcEEeCHHHHHHHHHhCCCcEEEEeccccceeEEEEcCCCCceeecccccccccccccCcccCcccc
Confidence 378899999999999999999986 445444445778888842 2346888887753
No 285
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=39.92 E-value=56 Score=32.73 Aligned_cols=70 Identities=19% Similarity=0.340 Sum_probs=48.8
Q ss_pred CCCcEEEEEeCC-CCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchH
Q 017790 214 SNNKIVIYFTSL-RGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEE 292 (366)
Q Consensus 214 ~~~kVVVYTTSL-~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDE 292 (366)
+.+-|.+|.-.= ..+-.-.++|-++..+|+.++|+|+..+-++- .+ ....++|-|=+||++|-+.+.
T Consensus 42 kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~--------~r----Sr~G~lPFIELNGe~iaDS~~ 109 (281)
T KOG4244|consen 42 KKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK--------RR----SRNGTLPFIELNGEHIADSDL 109 (281)
T ss_pred ccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce--------ee----ccCCCcceEEeCCeeccccHH
Confidence 444566665330 00112235899999999999999999886531 11 224689999999999999988
Q ss_pred HHH
Q 017790 293 IKQ 295 (366)
Q Consensus 293 v~~ 295 (366)
+..
T Consensus 110 I~~ 112 (281)
T KOG4244|consen 110 IED 112 (281)
T ss_pred HHH
Confidence 754
No 286
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=39.29 E-value=14 Score=32.78 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=33.3
Q ss_pred HHHHHHHhCCCcEEEEEccC-CHHHHHHHHHHHcC--CCCCCcccEEEeCCEE-EccchHHHHH
Q 017790 237 SVRMIFKSYRVGVDERDISM-DSSYRKELQDLLGV--EGKAITLPQVFIRGKH-IGGAEEIKQL 296 (366)
Q Consensus 237 raK~IL~~~gV~ydErDVsm-D~e~reEL~elLg~--~tg~~TVPqVFVdG~~-IGGaDEv~~L 296 (366)
.++.++...|+..++..-.+ +.+.++++++.... ..|...+|.++|+|++ +.|+.....+
T Consensus 133 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~G~Pt~vv~g~~~~~G~~~~~~~ 196 (201)
T cd03024 133 VLVDLAEEAGLDAAEARAVLASDEYADEVRADEARARQLGISGVPFFVFNGKYAVSGAQPPEVF 196 (201)
T ss_pred HHHHHHHHcCCCHHHHHHHhcCcccchHHHHHHHHHHHCCCCcCCEEEECCeEeecCCCCHHHH
Confidence 46677788887754332111 12223333222110 1246789999999885 5887765433
No 287
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=38.90 E-value=29 Score=38.93 Aligned_cols=46 Identities=24% Similarity=0.693 Sum_probs=35.5
Q ss_pred ccccccCCccceeeCCCCCCCceeeecCCCccccCCccccCcc--ccCCCCC
Q 017790 315 VSVCESCGDARFVPCSHCCGSRKVFDEEDGQLRRCTNCNENGL--IRCPACS 364 (366)
Q Consensus 315 ~~~C~~CGg~rfvpC~~C~GS~Kv~~e~~~~~~rC~~CNENGL--irCp~C~ 364 (366)
.-.|..||=. .-|++|..+.-..... +.++|-.|+-..- ..||.|.
T Consensus 435 ~l~C~~Cg~v--~~Cp~Cd~~lt~H~~~--~~L~CH~Cg~~~~~p~~Cp~Cg 482 (730)
T COG1198 435 LLLCRDCGYI--AECPNCDSPLTLHKAT--GQLRCHYCGYQEPIPQSCPECG 482 (730)
T ss_pred eeecccCCCc--ccCCCCCcceEEecCC--CeeEeCCCCCCCCCCCCCCCCC
Confidence 4689999854 5799999996655443 5789999998744 4799995
No 288
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=38.38 E-value=17 Score=33.51 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=33.7
Q ss_pred HHHHHHHHhCCCcEEEEEccCC-HHHHHHHHHHH--cCCCCCCcccEEEeCCEEEccchH
Q 017790 236 CSVRMIFKSYRVGVDERDISMD-SSYRKELQDLL--GVEGKAITLPQVFIRGKHIGGAEE 292 (366)
Q Consensus 236 ~raK~IL~~~gV~ydErDVsmD-~e~reEL~elL--g~~tg~~TVPqVFVdG~~IGGaDE 292 (366)
..++.++...|+.-++.+-.++ ..+++.+.+.. ....|...+|.++|||+|+=+...
T Consensus 124 ~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 124 ADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADLQLRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCCCCEEEECCEEEEcccc
Confidence 3577788888887655443322 23333333221 112246789999999999755443
No 289
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.01 E-value=25 Score=35.17 Aligned_cols=29 Identities=28% Similarity=0.765 Sum_probs=22.2
Q ss_pred cccccCCcc-----------ceeeCCCCCCCceeeecCCCccccCCccc
Q 017790 316 SVCESCGDA-----------RFVPCSHCCGSRKVFDEEDGQLRRCTNCN 353 (366)
Q Consensus 316 ~~C~~CGg~-----------rfvpC~~C~GS~Kv~~e~~~~~~rC~~CN 353 (366)
-.|..|.|. +|+-|..||- ++.+||+.|-
T Consensus 241 lpC~~C~GS~kv~~~~~~~~~~~rC~~CNE---------NGLvrCp~Cs 280 (281)
T KOG2824|consen 241 LPCSNCHGSCKVHEEEEDDGGVLRCLECNE---------NGLVRCPVCS 280 (281)
T ss_pred EecCCCCCceeeeeeccCCCcEEECcccCC---------CCceeCCccC
Confidence 479999875 4677888872 4689999993
No 290
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=35.82 E-value=74 Score=25.36 Aligned_cols=92 Identities=11% Similarity=0.085 Sum_probs=53.1
Q ss_pred CCCcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCC-cccEEEeCCEEEccchH
Q 017790 214 SNNKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAI-TLPQVFIRGKHIGGAEE 292 (366)
Q Consensus 214 ~~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~-TVPqVFVdG~~IGGaDE 292 (366)
..++++||+.+ ...+..+...|...+..+....=.++...+.++.+.+....... -.-.++.-|-.+.+++-
T Consensus 27 ~~~~~lvf~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~ 99 (131)
T cd00079 27 KGGKVLIFCPS-------KKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSV 99 (131)
T ss_pred CCCcEEEEeCc-------HHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCE
Confidence 34578999754 45788899999887888877776777777888887776322000 00111223333333333
Q ss_pred HHHHHhcCcHHHHhcCCCCc
Q 017790 293 IKQLNETGDLAMLLKGFPVV 312 (366)
Q Consensus 293 v~~L~EsGeL~kLL~~~~~~ 312 (366)
+.-+.-.-.+..+++..++.
T Consensus 100 vi~~~~~~~~~~~~Q~~GR~ 119 (131)
T cd00079 100 VINYDLPWSPSSYLQRIGRA 119 (131)
T ss_pred EEEeCCCCCHHHheeccccc
Confidence 33233344556666666554
No 291
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=35.73 E-value=26 Score=23.84 Aligned_cols=29 Identities=31% Similarity=0.748 Sum_probs=18.5
Q ss_pred eeCCCCCCCceeeecC---CCccccCCccccC
Q 017790 327 VPCSHCCGSRKVFDEE---DGQLRRCTNCNEN 355 (366)
Q Consensus 327 vpC~~C~GS~Kv~~e~---~~~~~rC~~CNEN 355 (366)
+.|+.|...-++-.+. .+..++|+.|...
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~ 34 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGHV 34 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCCE
Confidence 5788888887764321 1235688888653
No 292
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=35.71 E-value=1.2e+02 Score=23.61 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=26.1
Q ss_pred CchHHHHHHHHHh----CC--CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe
Q 017790 232 YEDCCSVRMIFKS----YR--VGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 232 ~~dC~raK~IL~~----~g--V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV 282 (366)
+.+|..++.+|+. ++ +.|..+|++.. .++.+.++ .. ...+|.|.+
T Consensus 24 ~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~----~~~~~~~~-i~-~~~~P~~~~ 74 (103)
T cd02982 24 DSESEELRERFKEVAKKFKGKLLFVVVDADDF----GRHLEYFG-LK-EEDLPVIAI 74 (103)
T ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEEEchHhh----HHHHHHcC-CC-hhhCCEEEE
Confidence 3478876666544 42 56667776542 34555565 21 137898865
No 293
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=35.67 E-value=1.1e+02 Score=28.19 Aligned_cols=67 Identities=10% Similarity=0.170 Sum_probs=43.6
Q ss_pred CCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcC----------------------CCCCCcccEEEe--CCEE
Q 017790 231 TYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGV----------------------EGKAITLPQVFI--RGKH 286 (366)
Q Consensus 231 T~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~----------------------~tg~~TVPqVFV--dG~~ 286 (366)
..+...++..+|+.+||+|+.+=.+.|.. -+++.++..+ ..+..++|.|=| ....
T Consensus 10 D~~~~~~a~~~L~~~gi~~dv~V~SaHRt-p~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP~~~~~ 88 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPYELRVVSAHRT-PELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIGVPVPSKA 88 (156)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEECcccC-HHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEEecCCccC
Confidence 45678899999999999999999998862 1222222210 012456677643 4456
Q ss_pred EccchHHHHHHh
Q 017790 287 IGGAEEIKQLNE 298 (366)
Q Consensus 287 IGGaDEv~~L~E 298 (366)
++|.|.+..+..
T Consensus 89 l~G~daLlS~vq 100 (156)
T TIGR01162 89 LSGLDSLLSIVQ 100 (156)
T ss_pred CCCHHHHHHHhc
Confidence 778887776665
No 294
>PRK02935 hypothetical protein; Provisional
Probab=35.30 E-value=22 Score=30.97 Aligned_cols=25 Identities=28% Similarity=0.768 Sum_probs=20.3
Q ss_pred eeCCCCCCCceeeecCCCccccCCccccC
Q 017790 327 VPCSHCCGSRKVFDEEDGQLRRCTNCNEN 355 (366)
Q Consensus 327 vpC~~C~GS~Kv~~e~~~~~~rC~~CNEN 355 (366)
|.|++|+--.|+.. +.-.|..|||-
T Consensus 71 V~CP~C~K~TKmLG----rvD~CM~C~~P 95 (110)
T PRK02935 71 VICPSCEKPTKMLG----RVDACMHCNQP 95 (110)
T ss_pred eECCCCCchhhhcc----ceeecCcCCCc
Confidence 68999998888874 34589999984
No 295
>PF13728 TraF: F plasmid transfer operon protein
Probab=35.08 E-value=1.3e+02 Score=28.43 Aligned_cols=59 Identities=14% Similarity=0.258 Sum_probs=37.4
Q ss_pred CCCcEEEEEeCCCCCCCCCchHHH----HHHHHHhCCCcEEEEEccCCH-----H--HHHHHHHHHcCCCCCCcccEEEe
Q 017790 214 SNNKIVIYFTSLRGIRRTYEDCCS----VRMIFKSYRVGVDERDISMDS-----S--YRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 214 ~~~kVVVYTTSL~gIRKT~~dC~r----aK~IL~~~gV~ydErDVsmD~-----e--~reEL~elLg~~tg~~TVPqVFV 282 (366)
+...+++|+.+ +|.+|.. ++.+-+.+|+.+..++++-.. . .-..+.+.++ ...+|.+|+
T Consensus 120 ~~~gL~~F~~~------~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~----v~~~Pal~L 189 (215)
T PF13728_consen 120 QKYGLFFFYRS------DCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLG----VKVTPALFL 189 (215)
T ss_pred hCeEEEEEEcC------CCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcC----CCcCCEEEE
Confidence 44557777755 4568985 455556789998888876210 0 0134555565 468999987
No 296
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.69 E-value=26 Score=37.11 Aligned_cols=35 Identities=17% Similarity=0.618 Sum_probs=20.3
Q ss_pred ccccccCC-------ccceeeCCCCCCCceeeecCCCccccCCccccCc
Q 017790 315 VSVCESCG-------DARFVPCSHCCGSRKVFDEEDGQLRRCTNCNENG 356 (366)
Q Consensus 315 ~~~C~~CG-------g~rfvpC~~C~GS~Kv~~e~~~~~~rC~~CNENG 356 (366)
...|..|+ ..+.+.|..|+-.... ..+||+|...-
T Consensus 222 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~-------~~~Cp~C~s~~ 263 (505)
T TIGR00595 222 ILCCPNCDVSLTYHKKEGKLRCHYCGYQEPI-------PKTCPQCGSED 263 (505)
T ss_pred ccCCCCCCCceEEecCCCeEEcCCCcCcCCC-------CCCCCCCCCCe
Confidence 44677776 3445667777644222 33677776543
No 297
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=34.53 E-value=27 Score=40.11 Aligned_cols=24 Identities=38% Similarity=0.823 Sum_probs=19.9
Q ss_pred cccccccCCccce------------eeCCCCCCCce
Q 017790 314 AVSVCESCGDARF------------VPCSHCCGSRK 337 (366)
Q Consensus 314 ~~~~C~~CGg~rf------------vpC~~C~GS~K 337 (366)
+.+.|..|.|.++ ++|+.|+|.+.
T Consensus 737 ~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~ 772 (943)
T PRK00349 737 KGGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRY 772 (943)
T ss_pred CCCCCCcccccceEEEEeccCCCccccCccccCccc
Confidence 4678999999875 57999999875
No 298
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=34.07 E-value=69 Score=29.12 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=27.1
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCH
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDS 258 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~ 258 (366)
+|+|.+-|.. ..+.+.+++.+|+.+|+.|+.+-++.|.
T Consensus 2 ~V~Ii~gs~S----D~~~~~~a~~~L~~~gi~~~~~V~saHR 39 (150)
T PF00731_consen 2 KVAIIMGSTS----DLPIAEEAAKTLEEFGIPYEVRVASAHR 39 (150)
T ss_dssp EEEEEESSGG----GHHHHHHHHHHHHHTT-EEEEEE--TTT
T ss_pred eEEEEeCCHH----HHHHHHHHHHHHHHcCCCEEEEEEeccC
Confidence 4666665532 3556889999999999999999998876
No 299
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=33.00 E-value=43 Score=29.80 Aligned_cols=33 Identities=21% Similarity=0.630 Sum_probs=22.3
Q ss_pred ceeeCCCCCCCc-eeeecCCCccccCCccccCcc
Q 017790 325 RFVPCSHCCGSR-KVFDEEDGQLRRCTNCNENGL 357 (366)
Q Consensus 325 rfvpC~~C~GS~-Kv~~e~~~~~~rC~~CNENGL 357 (366)
.||.|..|+-.- +...++..-+++|-+|..-.-
T Consensus 96 ~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~ 129 (133)
T TIGR00311 96 KYVICRECNRPDTRIIKEGRVSLLKCEACGAKAP 129 (133)
T ss_pred heEECCCCCCCCcEEEEeCCeEEEecccCCCCCc
Confidence 589999998874 334443333689999976543
No 300
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=32.66 E-value=1.2e+02 Score=25.80 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=26.5
Q ss_pred CCcEEEEEccCCHH--HHHHHHHHHcCCCCCCcccEEEeCCEEEccc
Q 017790 246 RVGVDERDISMDSS--YRKELQDLLGVEGKAITLPQVFIRGKHIGGA 290 (366)
Q Consensus 246 gV~ydErDVsmD~e--~reEL~elLg~~tg~~TVPqVFVdG~~IGGa 290 (366)
.+.|.++|+....+ ..+++.+++.+. .-=.|.|.|+|+.||-.
T Consensus 37 ~f~~~YiDi~~p~~~~~~~~~a~~I~ed--e~fYPlV~i~~eiV~EG 81 (93)
T PF07315_consen 37 PFEFTYIDIENPPENDHDQQFAERILED--ELFYPLVVINDEIVAEG 81 (93)
T ss_dssp -EEEEEEETTT----HHHHHHHHHHHTT--SS-SSEEEETTEEEEES
T ss_pred ceEEEEEecCCCCccHHHHHHHHHHHhc--ccccceEEECCEEEecC
Confidence 35578888875443 445565555432 34679999999999743
No 301
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=32.60 E-value=39 Score=34.61 Aligned_cols=39 Identities=23% Similarity=0.721 Sum_probs=23.9
Q ss_pred cccccCCccce----------------eeCCCCCCCceeeecCCCccccCCccccCccc
Q 017790 316 SVCESCGDARF----------------VPCSHCCGSRKVFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 316 ~~C~~CGg~rf----------------vpC~~C~GS~Kv~~e~~~~~~rC~~CNENGLi 358 (366)
..|..|.|.+. +.|..|+|+-.++..+ -+|+.|+--+.+
T Consensus 144 ~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~k----d~C~~C~G~~~v 198 (337)
T KOG0712|consen 144 PKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLK----DRCKTCSGAKVV 198 (337)
T ss_pred CCCCCCCCCCceeEEEeccccccccceeEeccCCCcccccccc----ccCcccccchhh
Confidence 35777777654 4577777776654332 267777655543
No 302
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.58 E-value=1.2e+02 Score=30.35 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=41.6
Q ss_pred CcEEEEEeCCCCCCCCCchHHHHHHHHHhCC-----CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEE--EeCCEEE-
Q 017790 216 NKIVIYFTSLRGIRRTYEDCCSVRMIFKSYR-----VGVDERDISMDSSYRKELQDLLGVEGKAITLPQV--FIRGKHI- 287 (366)
Q Consensus 216 ~kVVVYTTSL~gIRKT~~dC~raK~IL~~~g-----V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqV--FVdG~~I- 287 (366)
--||=||.+||| +|.++--++..+- .-|-++||+.- +.... ..|...+|.. |.+|.-|
T Consensus 23 ~v~Vdfta~wCG------PCk~IaP~Fs~lankYp~aVFlkVdVd~c-------~~taa-~~gV~amPTFiff~ng~kid 88 (288)
T KOG0908|consen 23 LVVVDFTASWCG------PCKRIAPIFSDLANKYPGAVFLKVDVDEC-------RGTAA-TNGVNAMPTFIFFRNGVKID 88 (288)
T ss_pred EEEEEEEecccc------hHHhhhhHHHHhhhhCcccEEEEEeHHHh-------hchhh-hcCcccCceEEEEecCeEee
Confidence 346669999998 9999888877653 33677888522 22221 2345677764 7788654
Q ss_pred --ccchHH
Q 017790 288 --GGAEEI 293 (366)
Q Consensus 288 --GGaDEv 293 (366)
-|+|..
T Consensus 89 ~~qGAd~~ 96 (288)
T KOG0908|consen 89 QIQGADAS 96 (288)
T ss_pred eecCCCHH
Confidence 677764
No 303
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=32.58 E-value=1.9e+02 Score=25.85 Aligned_cols=37 Identities=11% Similarity=0.236 Sum_probs=24.2
Q ss_pred CCCcEEEEEeCCCCCCCCCchHHHH----HHHHHhCCCcEEEEEccC
Q 017790 214 SNNKIVIYFTSLRGIRRTYEDCCSV----RMIFKSYRVGVDERDISM 256 (366)
Q Consensus 214 ~~~kVVVYTTSL~gIRKT~~dC~ra----K~IL~~~gV~ydErDVsm 256 (366)
+..+||.|..+||+ .|.+. .++-+.+|+.+..++++.
T Consensus 50 ~~~~lvnFWAsWCp------pCr~e~P~L~~l~~~~~~~Vi~Vs~d~ 90 (153)
T TIGR02738 50 DDYALVFFYQSTCP------YCHQFAPVLKRFSQQFGLPVYAFSLDG 90 (153)
T ss_pred CCCEEEEEECCCCh------hHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 34458888888775 89953 344456777776666653
No 304
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=32.25 E-value=84 Score=24.33 Aligned_cols=46 Identities=20% Similarity=0.415 Sum_probs=25.5
Q ss_pred EEEEEeCCCCCCCCCchHHH----HHHHHHhCC--CcEEEEEccCCHHHHHHHHHHHcC
Q 017790 218 IVIYFTSLRGIRRTYEDCCS----VRMIFKSYR--VGVDERDISMDSSYRKELQDLLGV 270 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~r----aK~IL~~~g--V~ydErDVsmD~e~reEL~elLg~ 270 (366)
++.|.+++| ..|.+ ++++-+.++ -.++.+-|+.|. ..+++++.+..
T Consensus 5 ll~fwa~~c------~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~-~~~~~~~~~~~ 56 (95)
T PF13905_consen 5 LLYFWASWC------PPCKKELPKLKELYKKYKKKDDVEFVFVSLDE-DEEEWKKFLKK 56 (95)
T ss_dssp EEEEE-TTS------HHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SS-SHHHHHHHHHT
T ss_pred EEEEECCCC------HHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCC-CHHHHHHHHHh
Confidence 344555555 47885 444444555 566666666663 45677777663
No 305
>PF06989 BAALC_N: BAALC N-terminus; InterPro: IPR009728 This entry represents the mammalian BAALC proteins. BAALC (brain and acute leukaemia, cytoplasmic) is highly conserved among mammals, but is absent from lower organisms. Two isoforms are specifically expressed in neuroectoderm-derived tissues, but not in tumours or cancer cell lines of non-neural tissue origin. It has been shown that blasts from a subset of patients with acute leukaemia greatly overexpress eight different BAALC transcripts, resulting in five protein isoforms. Among patients with acute myeloid leukaemia, those overexpressing BAALC show distinctly poor prognosis, pointing to a key role of the BAALC products in leukaemia. It has been suggested that BAALC is a gene implicated in both neuroectodermal and hematopoietic cell functions [].; GO: 0005737 cytoplasm
Probab=32.13 E-value=22 Score=26.95 Aligned_cols=14 Identities=43% Similarity=0.833 Sum_probs=13.0
Q ss_pred CCCCCCCCcccCCC
Q 017790 1 MGCTASRPNALPTG 14 (366)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (366)
|||..||+++|--+
T Consensus 1 mgcggsradaiepr 14 (53)
T PF06989_consen 1 MGCGGSRADAIEPR 14 (53)
T ss_pred CCCCccccccccch
Confidence 99999999999877
No 306
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=32.08 E-value=1.2e+02 Score=32.82 Aligned_cols=56 Identities=11% Similarity=0.281 Sum_probs=32.1
Q ss_pred cEEE-EEeCCCCCCCCCchHHHHHHH-H------Hh-CCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe
Q 017790 217 KIVI-YFTSLRGIRRTYEDCCSVRMI-F------KS-YRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 217 kVVV-YTTSL~gIRKT~~dC~raK~I-L------~~-~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV 282 (366)
.|+| |+.+|| ..|...+.. | +. .++.+...|++.+....+++.+.++ ...+|.+++
T Consensus 476 ~VlVdF~A~WC------~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~----v~g~Pt~~~ 540 (571)
T PRK00293 476 PVMLDLYADWC------VACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYN----VLGLPTILF 540 (571)
T ss_pred cEEEEEECCcC------HhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcC----CCCCCEEEE
Confidence 4554 555555 488865432 1 12 2466778898765433345555555 466888754
No 307
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=31.82 E-value=23 Score=27.70 Aligned_cols=19 Identities=37% Similarity=1.193 Sum_probs=14.9
Q ss_pred cccCCccccCccc-cCCCCC
Q 017790 346 LRRCTNCNENGLI-RCPACS 364 (366)
Q Consensus 346 ~~rC~~CNENGLi-rCp~C~ 364 (366)
.++|++|.+--|- .||.|+
T Consensus 5 ~rkC~~cg~YTLke~Cp~CG 24 (59)
T COG2260 5 IRKCPKCGRYTLKEKCPVCG 24 (59)
T ss_pred hhcCcCCCceeecccCCCCC
Confidence 4678888888887 888885
No 308
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=31.65 E-value=23 Score=31.09 Aligned_cols=27 Identities=26% Similarity=0.651 Sum_probs=21.1
Q ss_pred eeeCCCCCCCceeeecCCCccccCCccccCc
Q 017790 326 FVPCSHCCGSRKVFDEEDGQLRRCTNCNENG 356 (366)
Q Consensus 326 fvpC~~C~GS~Kv~~e~~~~~~rC~~CNENG 356 (366)
-|.|++|+--.|+... ..+|..|++--
T Consensus 69 ~V~CP~C~K~TKmLGr----~D~CM~C~~pL 95 (114)
T PF11023_consen 69 QVECPNCGKQTKMLGR----VDACMHCKEPL 95 (114)
T ss_pred eeECCCCCChHhhhch----hhccCcCCCcC
Confidence 4679999988888754 34999999853
No 309
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=31.14 E-value=2.7e+02 Score=22.77 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=13.5
Q ss_pred CchHHHHHHHHH----hCCCcEEEEEccCC
Q 017790 232 YEDCCSVRMIFK----SYRVGVDERDISMD 257 (366)
Q Consensus 232 ~~dC~raK~IL~----~~gV~ydErDVsmD 257 (366)
|+.|.+....|+ .+++.+..++++.+
T Consensus 37 C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~ 66 (127)
T cd03010 37 CAPCREEHPVLMALARQGRVPIYGINYKDN 66 (127)
T ss_pred CHHHHHHHHHHHHHHHhcCcEEEEEECCCC
Confidence 347886444443 33466655555433
No 310
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=31.02 E-value=45 Score=23.95 Aligned_cols=25 Identities=28% Similarity=0.716 Sum_probs=14.8
Q ss_pred eCCCCCCCceeeecCCCccccCCccc
Q 017790 328 PCSHCCGSRKVFDEEDGQLRRCTNCN 353 (366)
Q Consensus 328 pC~~C~GS~Kv~~e~~~~~~rC~~CN 353 (366)
.|+.|... +++.-......+|.+|.
T Consensus 20 ~CP~Cg~~-~~~~~~~~~~~~C~~C~ 44 (46)
T PF12760_consen 20 VCPHCGST-KHYRLKTRGRYRCKACR 44 (46)
T ss_pred CCCCCCCe-eeEEeCCCCeEECCCCC
Confidence 38888776 55433323455777775
No 311
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=30.59 E-value=34 Score=35.45 Aligned_cols=55 Identities=24% Similarity=0.465 Sum_probs=41.8
Q ss_pred CCEEEccchHHHHHHhcCcHHHHh--cCCCCcccccccccCCcccee-----------eCCCCCCCce
Q 017790 283 RGKHIGGAEEIKQLNETGDLAMLL--KGFPVVNAVSVCESCGDARFV-----------PCSHCCGSRK 337 (366)
Q Consensus 283 dG~~IGGaDEv~~L~EsGeL~kLL--~~~~~~~~~~~C~~CGg~rfv-----------pC~~C~GS~K 337 (366)
+|..+-|.++|++..+.|-.+.|| +.+........|..||...-. .|+.|++...
T Consensus 286 ~g~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~rc~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (403)
T TIGR03676 286 GGLAAYGEEEVRKALEMGAVDTLLISEDLRKIRVTFKCPNCGYEEEKTVKPEEGDKSEACPKCGSELE 353 (403)
T ss_pred CCcEEEcHHHHHHHHHhCCCcEEEEEccccceeEEEEcCCCCcceeeecccccccccccCcccCcccc
Confidence 367889999999999999999986 455544445789999876432 3888888744
No 312
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=30.58 E-value=17 Score=39.64 Aligned_cols=131 Identities=21% Similarity=0.331 Sum_probs=75.9
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHhCCCc--EEEEEccCC----HH---HHHHHHHHHcCCC---------CCCcccEE
Q 017790 219 VIYFTSLRGIRRTYEDCCSVRMIFKSYRVG--VDERDISMD----SS---YRKELQDLLGVEG---------KAITLPQV 280 (366)
Q Consensus 219 VVYTTSL~gIRKT~~dC~raK~IL~~~gV~--ydErDVsmD----~e---~reEL~elLg~~t---------g~~TVPqV 280 (366)
||+....+ -++-|..++++|+...-. +...|+.-+ .+ ...+|++.|..+. ....+++.
T Consensus 384 Vl~~WDf~----~y~Vs~~a~~~L~~ir~~Pl~~~q~ln~~Ly~~~~~L~~v~~lR~qL~~m~~~l~~Cr~a~~~~~~~~ 459 (580)
T KOG1829|consen 384 VLHNWDFT----KYPVSNFAKQFLDEIREQPLFNLQDLNPDLYSKVKALAEVKELRQQLQHIEGYLKTCRFASLKLLRQR 459 (580)
T ss_pred ceecccCc----ccccchhHHHHHHHHhccchhhhcccChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 56655543 245688899999886533 233333221 11 1123333322110 12567777
Q ss_pred EeCCEEEccchHHHHH-----HhcCcHHHHhcCCCCccc--ccccccCCccceeeCCCCCCCceeeecCCCccccCCccc
Q 017790 281 FIRGKHIGGAEEIKQL-----NETGDLAMLLKGFPVVNA--VSVCESCGDARFVPCSHCCGSRKVFDEEDGQLRRCTNCN 353 (366)
Q Consensus 281 FVdG~~IGGaDEv~~L-----~EsGeL~kLL~~~~~~~~--~~~C~~CGg~rfvpC~~C~GS~Kv~~e~~~~~~rC~~CN 353 (366)
++.-+|+---.++..| .+.|.|...|+.+-+... -..|.-|-+.+|+ |..|....-+|--+....+||..|+
T Consensus 460 ~~~~~yL~e~~~~~Sl~DL~~i~~g~L~~~l~~~~k~~~~HV~~C~lC~~~gfi-Ce~Cq~~~iiyPF~~~~~~rC~~C~ 538 (580)
T KOG1829|consen 460 LAVRRYLTESPHLFSLKDLQDIQDGALLRLLNELTKLSSKHVKECDLCTGKGFI-CELCQHNDIIYPFETRNTRRCSTCL 538 (580)
T ss_pred hhhhhhhccCchhhhhhhHHHhhcccHHHHHHHHHHHhhhhhhhchhhccCeee-eeeccCCCcccccccccceeHHHHH
Confidence 7777777655554333 356777777766543221 2469999999995 9999777666644334577888886
Q ss_pred c
Q 017790 354 E 354 (366)
Q Consensus 354 E 354 (366)
-
T Consensus 539 a 539 (580)
T KOG1829|consen 539 A 539 (580)
T ss_pred H
Confidence 3
No 313
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=30.39 E-value=43 Score=28.85 Aligned_cols=29 Identities=21% Similarity=0.633 Sum_probs=20.3
Q ss_pred ceeeCCCCCCCce-eeecCCCccccCCccc
Q 017790 325 RFVPCSHCCGSRK-VFDEEDGQLRRCTNCN 353 (366)
Q Consensus 325 rfvpC~~C~GS~K-v~~e~~~~~~rC~~CN 353 (366)
.||.|..|+-.-- ...++..-+++|-+|.
T Consensus 79 ~yVlC~~C~spdT~l~k~~r~~~l~C~aCG 108 (110)
T smart00653 79 EYVLCPECGSPDTELIKENRLFFLKCEACG 108 (110)
T ss_pred hcEECCCCCCCCcEEEEeCCeEEEEccccC
Confidence 4889999988743 3444433478999885
No 314
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=30.32 E-value=30 Score=24.98 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=7.6
Q ss_pred ccccCCccccC
Q 017790 345 QLRRCTNCNEN 355 (366)
Q Consensus 345 ~~~rC~~CNEN 355 (366)
....||.|...
T Consensus 25 ~~~~CP~Cg~~ 35 (52)
T TIGR02605 25 PLATCPECGGE 35 (52)
T ss_pred CCCCCCCCCCC
Confidence 35678888863
No 315
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=29.97 E-value=2.2e+02 Score=25.37 Aligned_cols=70 Identities=11% Similarity=-0.017 Sum_probs=40.3
Q ss_pred CCCcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCC-------CCcccEEEeCCE
Q 017790 214 SNNKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGK-------AITLPQVFIRGK 285 (366)
Q Consensus 214 ~~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg-------~~TVPqVFVdG~ 285 (366)
+..++||..|....--.....-.++-+.++..||.+.-+-|.. ....+|++......+ ..-+|++||+.+
T Consensus 108 ~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~--~~~~~L~~IA~~~~~~~~~~~~~~l~~~~~~~~~ 184 (186)
T cd01480 108 KENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS--QNEEPLSRIACDGKSALYRENFAELLWSFFIDDE 184 (186)
T ss_pred CCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc--cchHHHHHHHcCCcchhhhcchhhhccccccccc
Confidence 3456666666643200011123445566789999988887765 244567776643221 235688888865
No 316
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=29.97 E-value=50 Score=29.56 Aligned_cols=34 Identities=18% Similarity=0.522 Sum_probs=22.9
Q ss_pred ceeeCCCCCCCce-eeecCCCccccCCccccCccc
Q 017790 325 RFVPCSHCCGSRK-VFDEEDGQLRRCTNCNENGLI 358 (366)
Q Consensus 325 rfvpC~~C~GS~K-v~~e~~~~~~rC~~CNENGLi 358 (366)
.||.|..|+-.-- ...++..-+++|-+|....-|
T Consensus 101 ~yVlC~~C~spdT~l~k~~r~~~l~C~ACGa~~~V 135 (138)
T PRK03988 101 EYVICPECGSPDTKLIKEGRIWVLKCEACGAETPV 135 (138)
T ss_pred hcEECCCCCCCCcEEEEcCCeEEEEcccCCCCCcC
Confidence 4889999988743 334433348899999865443
No 317
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=29.62 E-value=42 Score=28.94 Aligned_cols=23 Identities=17% Similarity=0.621 Sum_probs=13.5
Q ss_pred cccccccCCcc------ceeeCCCCCCCc
Q 017790 314 AVSVCESCGDA------RFVPCSHCCGSR 336 (366)
Q Consensus 314 ~~~~C~~CGg~------rfvpC~~C~GS~ 336 (366)
+...|..||-. .|..|+.|++..
T Consensus 70 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 98 (117)
T PRK00564 70 VELECKDCSHVFKPNALDYGVCEKCHSKN 98 (117)
T ss_pred CEEEhhhCCCccccCCccCCcCcCCCCCc
Confidence 35678888732 233477776654
No 318
>PLN02189 cellulose synthase
Probab=29.42 E-value=28 Score=40.46 Aligned_cols=39 Identities=31% Similarity=0.793 Sum_probs=26.6
Q ss_pred ccccccCCcc--------ceeeCCCCCCC-ce---eeecCCCccccCCcccc
Q 017790 315 VSVCESCGDA--------RFVPCSHCCGS-RK---VFDEEDGQLRRCTNCNE 354 (366)
Q Consensus 315 ~~~C~~CGg~--------rfvpC~~C~GS-~K---v~~e~~~~~~rC~~CNE 354 (366)
...|.-|||. -||.|..|.=- || -|.++ .+...||.|+-
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~-eg~q~CpqCkt 84 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERR-EGTQNCPQCKT 84 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhh-cCCccCcccCC
Confidence 5689999988 89999999543 33 34333 24567777763
No 319
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=29.36 E-value=42 Score=27.34 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=11.7
Q ss_pred HHHHHHHhCCCcEEEEEc
Q 017790 237 SVRMIFKSYRVGVDERDI 254 (366)
Q Consensus 237 raK~IL~~~gV~ydErDV 254 (366)
.++.+++++||+..|+++
T Consensus 34 tvkd~IEsLGVP~tEV~~ 51 (81)
T PF14451_consen 34 TVKDVIESLGVPHTEVGL 51 (81)
T ss_pred cHHHHHHHcCCChHHeEE
Confidence 466777777777666553
No 320
>PHA00626 hypothetical protein
Probab=29.32 E-value=43 Score=26.18 Aligned_cols=29 Identities=14% Similarity=0.447 Sum_probs=19.3
Q ss_pred eCCCCCCCceeeecCCCccccCCcccc-CccccCCCCCC
Q 017790 328 PCSHCCGSRKVFDEEDGQLRRCTNCNE-NGLIRCPACSC 365 (366)
Q Consensus 328 pC~~C~GS~Kv~~e~~~~~~rC~~CNE-NGLirCp~C~~ 365 (366)
.|+.|+-. ...||..|+. -.+-.|+.|.+
T Consensus 2 ~CP~CGS~---------~Ivrcg~cr~~snrYkCkdCGY 31 (59)
T PHA00626 2 SCPKCGSG---------NIAKEKTMRGWSDDYVCCDCGY 31 (59)
T ss_pred CCCCCCCc---------eeeeeceecccCcceEcCCCCC
Confidence 47777532 2447777777 77778888864
No 321
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=28.98 E-value=1.1e+02 Score=32.52 Aligned_cols=66 Identities=15% Similarity=0.323 Sum_probs=38.0
Q ss_pred CCCcEEEEEeCCCCCCCCCchHHHHHHHHHhCC--CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccc
Q 017790 214 SNNKIVIYFTSLRGIRRTYEDCCSVRMIFKSYR--VGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGA 290 (366)
Q Consensus 214 ~~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~g--V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGa 290 (366)
+.-..--|++-.| ..|+|-.++..++.-++ |...-+|=. -|++|...+ +...||.||++|+..|..
T Consensus 116 g~~~FETy~SltC---~nCPDVVQALN~msvlNp~I~H~~IdGa---~Fq~Evear-----~IMaVPtvflnGe~fg~G 183 (520)
T COG3634 116 GDFHFETYFSLTC---HNCPDVVQALNLMSVLNPRIKHTAIDGA---LFQDEVEAR-----NIMAVPTVFLNGEEFGQG 183 (520)
T ss_pred CceeEEEEEEeec---cCChHHHHHHHHHHhcCCCceeEEecch---hhHhHHHhc-----cceecceEEEcchhhccc
Confidence 3445567775444 23344444554444443 334444432 366777543 246899999999988754
No 322
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=28.38 E-value=36 Score=29.33 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCCcEEEEEccC-CHHHHHHHHHHHc--CCCCCCcccEEEeCCEEEccchH
Q 017790 236 CSVRMIFKSYRVGVDERDISM-DSSYRKELQDLLG--VEGKAITLPQVFIRGKHIGGAEE 292 (366)
Q Consensus 236 ~raK~IL~~~gV~ydErDVsm-D~e~reEL~elLg--~~tg~~TVPqVFVdG~~IGGaDE 292 (366)
..+..++...|+..++++-.+ +.+.++.+++... ...|...+|.+||+|+++-+...
T Consensus 100 ~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~gi~gTPt~iInG~~~~~~~~ 159 (178)
T cd03019 100 DDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKYKITGVPAFVVNGKYVVNPSA 159 (178)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCCCCeEEECCEEEEChhh
Confidence 357788888888654433221 2233333332211 12246789999999998755443
No 323
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=28.06 E-value=1.3e+02 Score=31.91 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=32.5
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHh-------CCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEE--eCC
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRMIFKS-------YRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVF--IRG 284 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~IL~~-------~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVF--VdG 284 (366)
||.|+.+||+ .|..+..+|+. .++.+..+|++.+.. +...+.++ ...+|.|+ -+|
T Consensus 375 LV~FyApWC~------~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~----I~~~PTii~Fk~g 438 (463)
T TIGR00424 375 LVVLYAPWCP------FCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQ----LGSFPTILFFPKH 438 (463)
T ss_pred EEEEECCCCh------HHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcC----CCccceEEEEECC
Confidence 5567777775 89866555432 246788888876531 22223444 45778774 455
No 324
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=27.96 E-value=2.7e+02 Score=21.02 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCCCCCchHHH----HHHHHHhC---CCcEEEEEccCC
Q 017790 218 IVIYFTSLRGIRRTYEDCCS----VRMIFKSY---RVGVDERDISMD 257 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~r----aK~IL~~~---gV~ydErDVsmD 257 (366)
|+.|..++|+ .|.+ ++.+-+.+ ++.+..++++.+
T Consensus 23 ll~f~~~~C~------~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 23 LVNFWASWCP------PCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred EEEeecccCh------hHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 5555555554 6774 34444444 466777777654
No 325
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=27.68 E-value=59 Score=25.21 Aligned_cols=35 Identities=23% Similarity=0.542 Sum_probs=23.4
Q ss_pred cceeeCCCCCCCceeeecCCCc----cccCCccccCccc
Q 017790 324 ARFVPCSHCCGSRKVFDEEDGQ----LRRCTNCNENGLI 358 (366)
Q Consensus 324 ~rfvpC~~C~GS~Kv~~e~~~~----~~rC~~CNENGLi 358 (366)
.+++.|+.|++..++-.+++.. -+-||.|..--||
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~EtlI 40 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQETLI 40 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceEEE
Confidence 3689999999998753333221 3578888765554
No 326
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=27.60 E-value=32 Score=33.65 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=24.1
Q ss_pred ccccccCCccceeeCCCCCCCceeeecC
Q 017790 315 VSVCESCGDARFVPCSHCCGSRKVFDEE 342 (366)
Q Consensus 315 ~~~C~~CGg~rfvpC~~C~GS~Kv~~e~ 342 (366)
...|..-.|..++.|+.|.|+-++-.|.
T Consensus 27 ~~py~e~~g~~~vtCPTCqGtGrIP~eq 54 (238)
T PF07092_consen 27 SFPYVEFTGRDSVTCPTCQGTGRIPREQ 54 (238)
T ss_pred cCccccccCCCCCcCCCCcCCccCCccc
Confidence 4678888999999999999999987653
No 327
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=27.48 E-value=35 Score=29.97 Aligned_cols=45 Identities=20% Similarity=0.452 Sum_probs=30.0
Q ss_pred HhcCcHHHHhcCCCCcccccccccCCccceeeCCCCCCCceee-ecCCCccccCCcccc
Q 017790 297 NETGDLAMLLKGFPVVNAVSVCESCGDARFVPCSHCCGSRKVF-DEEDGQLRRCTNCNE 354 (366)
Q Consensus 297 ~EsGeL~kLL~~~~~~~~~~~C~~CGg~rfvpC~~C~GS~Kv~-~e~~~~~~rC~~CNE 354 (366)
+....|+.+|..+= ..||.|..|+..--.+ .++..-+++|-+|..
T Consensus 77 ~~~~~i~~~L~~fI-------------~~yVlC~~C~spdT~l~k~~r~~~l~C~aCGa 122 (125)
T PF01873_consen 77 FSSKQIQDLLDKFI-------------KEYVLCPECGSPDTELIKEGRLIFLKCKACGA 122 (125)
T ss_dssp SSCCHHHHHHHHHH-------------CHHSSCTSTSSSSEEEEEETTCCEEEETTTSC
T ss_pred cCHHHHHHHHHHHH-------------HHEEEcCCCCCCccEEEEcCCEEEEEecccCC
Confidence 45567777776543 2478999998775433 344445889999975
No 328
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=27.48 E-value=1.8e+02 Score=27.32 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=47.8
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHH--HHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHH
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSS--YRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIK 294 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e--~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~ 294 (366)
++++|+.-. ...|.++...+...|+.|+.+.|+.... ...|+.++ ....+||.+--+|-.+=....+.
T Consensus 2 ~~~ly~~~~------s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~----nP~~kVP~l~d~~~~l~eS~AI~ 71 (226)
T KOG0867|consen 2 KLKLYGHLG------SPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKL----NPLGKVPALEDGGLTLWESHAIL 71 (226)
T ss_pred CceEeecCC------CcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhc----CcCCCCCeEecCCeEEeeHHHHH
Confidence 456887543 3579999999999999999997765432 22344432 23578999888877777665655
Q ss_pred H
Q 017790 295 Q 295 (366)
Q Consensus 295 ~ 295 (366)
.
T Consensus 72 ~ 72 (226)
T KOG0867|consen 72 R 72 (226)
T ss_pred H
Confidence 5
No 329
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=27.45 E-value=1.5e+02 Score=29.48 Aligned_cols=54 Identities=20% Similarity=0.377 Sum_probs=32.9
Q ss_pred EEEEEeCCCCCCCCCchHHHHHH-------HHHhCC--CcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEE--eCCE
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRM-------IFKSYR--VGVDERDISMDSSYRKELQDLLGVEGKAITLPQVF--IRGK 285 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~-------IL~~~g--V~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVF--VdG~ 285 (366)
+|.|+++||+ .|.++.. .+++.+ |.+..+|.+.+ .++.+.++ ...+|.++ -+|+
T Consensus 22 ~v~f~a~wC~------~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----~~l~~~~~----i~~~Pt~~~~~~g~ 86 (462)
T TIGR01130 22 LVEFYAPWCG------HCKSLAPEYEKAADELKKKGPPIKLAKVDATEE----KDLAQKYG----VSGYPTLKIFRNGE 86 (462)
T ss_pred EEEEECCCCH------HHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc----HHHHHhCC----CccccEEEEEeCCc
Confidence 5677777775 7885443 344455 66777777644 34555554 46788774 3454
No 330
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=27.20 E-value=31 Score=33.69 Aligned_cols=35 Identities=26% Similarity=0.736 Sum_probs=17.0
Q ss_pred ccccccCC--------------ccceeeCCCCCCCceeeecCCCccccCCccccC
Q 017790 315 VSVCESCG--------------DARFVPCSHCCGSRKVFDEEDGQLRRCTNCNEN 355 (366)
Q Consensus 315 ~~~C~~CG--------------g~rfvpC~~C~GS~Kv~~e~~~~~~rC~~CNEN 355 (366)
.+.|.-|| |.||.-|+.|+-.-+. ...+|+.|.+.
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~------~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF------VRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--------TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee------cCCCCcCCCCC
Confidence 36899998 4589999999766332 23467777654
No 331
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=27.19 E-value=3.4e+02 Score=23.23 Aligned_cols=14 Identities=43% Similarity=0.688 Sum_probs=8.2
Q ss_pred CCcccEEE-e--CCEEE
Q 017790 274 AITLPQVF-I--RGKHI 287 (366)
Q Consensus 274 ~~TVPqVF-V--dG~~I 287 (366)
...+|.+| | +|+.+
T Consensus 136 v~~~P~~~lid~~g~i~ 152 (173)
T PRK03147 136 VGPLPTTFLIDKDGKVV 152 (173)
T ss_pred CCCcCeEEEECCCCcEE
Confidence 45678765 4 36544
No 332
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=27.16 E-value=62 Score=39.92 Aligned_cols=51 Identities=20% Similarity=0.445 Sum_probs=32.5
Q ss_pred EEccchHHHHHHhcCcHHHHhcCCCC-----cccccccccCCccce---------eeCCCCCCCce
Q 017790 286 HIGGAEEIKQLNETGDLAMLLKGFPV-----VNAVSVCESCGDARF---------VPCSHCCGSRK 337 (366)
Q Consensus 286 ~IGGaDEv~~L~EsGeL~kLL~~~~~-----~~~~~~C~~CGg~rf---------vpC~~C~GS~K 337 (366)
|+|=+|++++|.-+=...+... +.+ ..+++.|+.|.|.+. ++|+.|+|.+.
T Consensus 687 Y~g~fd~IR~lFA~~~~ak~~g-~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 687 YIKAFDDLRELFAEQPRSKRLG-LTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred ehhhhHHHHHHHhhChHHHHcC-CCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 3344567777765444444222 222 114678999999985 58999999765
No 333
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=26.84 E-value=72 Score=36.28 Aligned_cols=9 Identities=22% Similarity=0.560 Sum_probs=6.3
Q ss_pred ccccccCCc
Q 017790 315 VSVCESCGD 323 (366)
Q Consensus 315 ~~~C~~CGg 323 (366)
...|..||+
T Consensus 592 ~~~CP~Cg~ 600 (860)
T PRK06319 592 EIDCPKCHK 600 (860)
T ss_pred CcccCCCCC
Confidence 356888874
No 334
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=26.52 E-value=62 Score=25.15 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=15.0
Q ss_pred EEeCCEEEccchHHHHHHh
Q 017790 280 VFIRGKHIGGAEEIKQLNE 298 (366)
Q Consensus 280 VFVdG~~IGGaDEv~~L~E 298 (366)
||++|..||=.++-.+|.+
T Consensus 1 VFlNG~~iG~~~~p~~l~~ 19 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEELVK 19 (63)
T ss_dssp EEETTEEEEEESSHHHHHH
T ss_pred CEECCEEEEEEcCHHHHHH
Confidence 7999999998887655444
No 335
>PRK07220 DNA topoisomerase I; Validated
Probab=26.06 E-value=69 Score=35.75 Aligned_cols=51 Identities=25% Similarity=0.584 Sum_probs=29.1
Q ss_pred ccccccCCc----------cceeeCCC---CCCCceeeecC--CCccccCCcccc-------Cc----cccCCCCCC
Q 017790 315 VSVCESCGD----------ARFVPCSH---CCGSRKVFDEE--DGQLRRCTNCNE-------NG----LIRCPACSC 365 (366)
Q Consensus 315 ~~~C~~CGg----------~rfvpC~~---C~GS~Kv~~e~--~~~~~rC~~CNE-------NG----LirCp~C~~ 365 (366)
...|..||+ .+|+-|.. |.-....-..+ ...-..|+.|+. .| -+.||.|.+
T Consensus 589 ~~~CP~Cg~~l~~r~~r~g~~f~gCs~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~~~~k~~~~g~~~~~~~Cp~C~~ 665 (740)
T PRK07220 589 IGKCPLCGSDLMVRRSKRGSRFIGCEGYPECTFSLPLPKSGQIIVTDKVCEAHGLNHIRIINGGKRPWDLGCPQCNF 665 (740)
T ss_pred ccccccCCCeeeEEecCCCceEEEcCCCCCCCceeeCCCCCccccCCCCCCCCCCceEEEEecCCccceeeCCCCCC
Confidence 357999984 35888865 65332221110 001247999974 12 357988863
No 336
>PLN02309 5'-adenylylsulfate reductase
Probab=25.61 E-value=1.4e+02 Score=31.82 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHh-------CCCcEEEEEccCCHHHHHHHH-HHHcCCCCCCcccEEEe
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKS-------YRVGVDERDISMDSSYRKELQ-DLLGVEGKAITLPQVFI 282 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~-------~gV~ydErDVsmD~e~reEL~-elLg~~tg~~TVPqVFV 282 (366)
-||.|+++||+ .|..+...|+. .+|.+-.+|++.+. .++. +.++ ...+|.|++
T Consensus 368 vlV~FyApWC~------~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~---~~la~~~~~----I~~~PTil~ 428 (457)
T PLN02309 368 WLVVLYAPWCP------FCQAMEASYEELAEKLAGSGVKVAKFRADGDQ---KEFAKQELQ----LGSFPTILL 428 (457)
T ss_pred EEEEEECCCCh------HHHHHHHHHHHHHHHhccCCeEEEEEECCCcc---hHHHHhhCC----CceeeEEEE
Confidence 36778888875 89866655533 34667777776221 1232 2343 467888754
No 337
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=25.56 E-value=37 Score=30.00 Aligned_cols=47 Identities=26% Similarity=0.574 Sum_probs=26.0
Q ss_pred cHHHHhcCCCCcccccccccCCccceeeCCCCCCCceeee-c------------CCCccccCCcccc
Q 017790 301 DLAMLLKGFPVVNAVSVCESCGDARFVPCSHCCGSRKVFD-E------------EDGQLRRCTNCNE 354 (366)
Q Consensus 301 eL~kLL~~~~~~~~~~~C~~CGg~rfvpC~~C~GS~Kv~~-e------------~~~~~~rC~~CNE 354 (366)
.|.++++.++..-.. ...|.-|..|||.-.... + ....|.+|+.|+.
T Consensus 73 QL~ev~~~~~l~~~~-------~~~~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~k 132 (147)
T PF01927_consen 73 QLREVLERFGLKLRL-------DPIFSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGK 132 (147)
T ss_pred HHHHHHHHcCCcccc-------CCCCCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCC
Confidence 566677666543211 334667888888533221 1 1134778888863
No 338
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=25.38 E-value=41 Score=32.43 Aligned_cols=13 Identities=38% Similarity=0.866 Sum_probs=7.2
Q ss_pred ccCCccccCcccc
Q 017790 347 RRCTNCNENGLIR 359 (366)
Q Consensus 347 ~rC~~CNENGLir 359 (366)
.+|+.|+..|++|
T Consensus 138 p~C~~Cg~~g~lr 150 (242)
T PTZ00408 138 SRCKCCGCVGTLR 150 (242)
T ss_pred CccccCCCCCCCC
Confidence 4566666555543
No 339
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=25.34 E-value=39 Score=37.30 Aligned_cols=9 Identities=33% Similarity=0.851 Sum_probs=4.9
Q ss_pred CCCCCCCce
Q 017790 329 CSHCCGSRK 337 (366)
Q Consensus 329 C~~C~GS~K 337 (366)
|+.|.-+-+
T Consensus 98 c~~c~~~~~ 106 (715)
T COG1107 98 CPECRRKPK 106 (715)
T ss_pred ChhHhhCCc
Confidence 555555544
No 340
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=25.22 E-value=2.9e+02 Score=24.80 Aligned_cols=35 Identities=9% Similarity=0.125 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCCCCCchHHHHHH---HHHhCCCcEEEEEccCCH
Q 017790 218 IVIYFTSLRGIRRTYEDCCSVRM---IFKSYRVGVDERDISMDS 258 (366)
Q Consensus 218 VVVYTTSL~gIRKT~~dC~raK~---IL~~~gV~ydErDVsmD~ 258 (366)
||.|..+|| +.|.+..- -|...++.+.-++++.+.
T Consensus 72 vv~FwatwC------~~C~~e~p~l~~l~~~~~~vi~v~~~~~~ 109 (185)
T PRK15412 72 LLNVWATWC------PTCRAEHQYLNQLSAQGIRVVGMNYKDDR 109 (185)
T ss_pred EEEEECCCC------HHHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence 344555555 48885332 244557777777665443
No 341
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=25.18 E-value=2.6e+02 Score=25.89 Aligned_cols=63 Identities=19% Similarity=0.179 Sum_probs=38.1
Q ss_pred chHHHHHHHHHhC-CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHHHHHHhcCcHHHHhcC
Q 017790 233 EDCCSVRMIFKSY-RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEIKQLNETGDLAMLLKG 308 (366)
Q Consensus 233 ~dC~raK~IL~~~-gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv~~L~EsGeL~kLL~~ 308 (366)
++-..+++.|+.+ |+.+...++..+++.. +.+.... .||+.| |....+++..+.-.|.++|+.
T Consensus 46 ~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~----~~l~~ad------~I~l~G---G~~~~~~~~l~~~~l~~~l~~ 109 (212)
T cd03146 46 EYTARFYAAFESLRGVEVSHLHLFDTEDPL----DALLEAD------VIYVGG---GNTFNLLAQWREHGLDAILKA 109 (212)
T ss_pred HHHHHHHHHHhhccCcEEEEEeccCcccHH----HHHhcCC------EEEECC---chHHHHHHHHHHcCHHHHHHH
Confidence 3466789999999 9998888764433222 3332121 378877 655555553333356666654
No 342
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=24.56 E-value=29 Score=33.86 Aligned_cols=17 Identities=59% Similarity=1.433 Sum_probs=0.0
Q ss_pred ccCCcccc--------CccccCCCC
Q 017790 347 RRCTNCNE--------NGLIRCPAC 363 (366)
Q Consensus 347 ~rC~~CNE--------NGLirCp~C 363 (366)
++|..||| |.|.|||.|
T Consensus 171 V~CgHC~~tFLfnt~tnaLArCPHC 195 (275)
T KOG4684|consen 171 VKCGHCNETFLFNTLTNALARCPHC 195 (275)
T ss_pred EEecCccceeehhhHHHHHhcCCcc
No 343
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=24.39 E-value=1.5e+02 Score=29.71 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=21.3
Q ss_pred CCCcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCc
Q 017790 214 SNNKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVG 248 (366)
Q Consensus 214 ~~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ 248 (366)
...+||||-++ |+ .|..+-.+|..+|..
T Consensus 170 kdk~IvvyC~~--G~-----Rs~~aa~~L~~~Gf~ 197 (314)
T PRK00142 170 KDKKVVMYCTG--GI-----RCEKASAWMKHEGFK 197 (314)
T ss_pred CcCeEEEECCC--Cc-----HHHHHHHHHHHcCCC
Confidence 55679999765 32 578888899998875
No 344
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=24.39 E-value=3e+02 Score=24.34 Aligned_cols=24 Identities=8% Similarity=0.056 Sum_probs=14.1
Q ss_pred CchHHHHHHHH---HhCCCcEEEEEcc
Q 017790 232 YEDCCSVRMIF---KSYRVGVDERDIS 255 (366)
Q Consensus 232 ~~dC~raK~IL---~~~gV~ydErDVs 255 (366)
|+.|.+....| .+.++.+..++++
T Consensus 75 C~~C~~~~p~l~~l~~~~~~vi~V~~~ 101 (173)
T TIGR00385 75 CPPCRAEHPYLNELAKDGLPIVGVDYK 101 (173)
T ss_pred CHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 45788644333 3446777776664
No 345
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=24.29 E-value=35 Score=35.92 Aligned_cols=140 Identities=15% Similarity=0.160 Sum_probs=70.6
Q ss_pred cCCCCCCCCCCcEEEEEeCCCCCCCCCch-HHHHHHHHHhCCCcEEEEEccCC---H--HHHHHHHHHHcCCC----C-C
Q 017790 206 HQHRPTKESNNKIVIYFTSLRGIRRTYED-CCSVRMIFKSYRVGVDERDISMD---S--SYRKELQDLLGVEG----K-A 274 (366)
Q Consensus 206 ~~~~~~~~~~~kVVVYTTSL~gIRKT~~d-C~raK~IL~~~gV~ydErDVsmD---~--e~reEL~elLg~~t----g-~ 274 (366)
....|+|-..+.|.+= ||--++. =.++.+++....+.+...+.... . ....+|.++-.... + .
T Consensus 202 ~~~~i~P~t~~PVl~G------IRg~~p~~l~~a~~~i~~e~~e~~~if~TNqatD~hl~~~~~l~d~~~~~~~~v~g~v 275 (421)
T COG1571 202 LYPLIPPHTPNPVLYG------IRGAVPEVLLKAMSLIKRELVERSAIFETNQATDDHLVDKGKLNDIEDYSKYRVVGRV 275 (421)
T ss_pred cccccCCCCCCCEEEE------EecCCHHHHHHHHHHHhccCcceEEEEeccchhhhhccccchhhhhhhccceEEEEEE
Confidence 3455677777776433 3433333 22566666666666666554322 1 11122433322100 1 2
Q ss_pred CcccEEEeCCEEEccc---h---HHHHHHhcCcHHHHhcCCCCcccccccccCCcc-----------------ceeeCCC
Q 017790 275 ITLPQVFIRGKHIGGA---E---EIKQLNETGDLAMLLKGFPVVNAVSVCESCGDA-----------------RFVPCSH 331 (366)
Q Consensus 275 ~TVPqVFVdG~~IGGa---D---Ev~~L~EsGeL~kLL~~~~~~~~~~~C~~CGg~-----------------rfvpC~~ 331 (366)
..-|+..-+|..|.-. + ...+....+++..+...+...+.-..+.+=... +--.|+.
T Consensus 276 ~~~p~~ieGghv~v~i~d~~G~I~~~A~eptk~fr~~a~~L~pGD~i~~~G~~~~~~~n~ek~~v~~l~~~~~~~p~Cp~ 355 (421)
T COG1571 276 EAEPRAIEGGHVVVEITDGEGEIGAVAFEPTKEFRELARKLIPGDEITVYGSVKPGTLNLEKFQVLKLARYERVNPVCPR 355 (421)
T ss_pred ecccEEeeCCEEEEEecCCCceEEEEEecccccchHHHHhcCCCCEEEEecCccccceeEEEEEEEEeeeeEEcCCCCCc
Confidence 3457777777655322 1 133444555666666555443322222111111 1137999
Q ss_pred CCCCceeeecCCCccccCCcccc
Q 017790 332 CCGSRKVFDEEDGQLRRCTNCNE 354 (366)
Q Consensus 332 C~GS~Kv~~e~~~~~~rC~~CNE 354 (366)
|+|+.|+-..+ +| ||+.|..
T Consensus 356 Cg~~m~S~G~~--g~-rC~kCg~ 375 (421)
T COG1571 356 CGGRMKSAGRN--GF-RCKKCGT 375 (421)
T ss_pred cCCchhhcCCC--Cc-ccccccc
Confidence 99999987654 34 8888864
No 346
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=24.11 E-value=4.4e+02 Score=24.08 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=45.8
Q ss_pred CCcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEeCCEEEccchHH-
Q 017790 215 NNKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFIRGKHIGGAEEI- 293 (366)
Q Consensus 215 ~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFVdG~~IGGaDEv- 293 (366)
..+|++..|.... .-.+....++.|+.+|+......+..+ ...+++.+.+... -.|||.| |....+
T Consensus 29 ~~~i~~iptA~~~---~~~~~~~~~~~~~~lG~~~~~~~~~~~-~~~~~~~~~l~~a------d~I~~~G---G~~~~~~ 95 (210)
T cd03129 29 GARVLFIPTASGD---RDEYGEEYRAAFERLGVEVVHLLLIDT-ANDPDVVARLLEA------DGIFVGG---GNQLRLL 95 (210)
T ss_pred CCeEEEEeCCCCC---hHHHHHHHHHHHHHcCCceEEEeccCC-CCCHHHHHHHhhC------CEEEEcC---CcHHHHH
Confidence 4456555554322 234567899999999999887776422 1223445555422 2356555 333333
Q ss_pred HHHHhcCcHHHHhcCC
Q 017790 294 KQLNETGDLAMLLKGF 309 (366)
Q Consensus 294 ~~L~EsGeL~kLL~~~ 309 (366)
..|.+.+-++.+++.+
T Consensus 96 ~~l~~t~~~~~i~~~~ 111 (210)
T cd03129 96 SVLRETPLLDAILKRV 111 (210)
T ss_pred HHHHhCChHHHHHHHH
Confidence 3366666666666554
No 347
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=23.70 E-value=74 Score=29.92 Aligned_cols=32 Identities=25% Similarity=0.630 Sum_probs=20.0
Q ss_pred ceeeCCCCCCCc-eeeecCCCccccCCccccCc
Q 017790 325 RFVPCSHCCGSR-KVFDEEDGQLRRCTNCNENG 356 (366)
Q Consensus 325 rfvpC~~C~GS~-Kv~~e~~~~~~rC~~CNENG 356 (366)
.||.|..|+-.- +...+...-+++|-+|..-+
T Consensus 97 ~yV~C~~C~~pdT~l~k~~~~~~l~C~aCGa~~ 129 (201)
T PRK12336 97 EYVICSECGLPDTRLVKEDRVLMLRCDACGAHR 129 (201)
T ss_pred heEECCCCCCCCcEEEEcCCeEEEEcccCCCCc
Confidence 478888887764 33333333367888887544
No 348
>PLN02436 cellulose synthase A
Probab=23.45 E-value=42 Score=39.19 Aligned_cols=39 Identities=26% Similarity=0.758 Sum_probs=26.7
Q ss_pred ccccccCCcc--------ceeeCCCCCCC-ce---eeecCCCccccCCcccc
Q 017790 315 VSVCESCGDA--------RFVPCSHCCGS-RK---VFDEEDGQLRRCTNCNE 354 (366)
Q Consensus 315 ~~~C~~CGg~--------rfvpC~~C~GS-~K---v~~e~~~~~~rC~~CNE 354 (366)
...|+-|||. =||.|-.|.=. || -|.++ .+...||.|+-
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~-eg~~~Cpqckt 86 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERR-EGNQACPQCKT 86 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhh-cCCccCcccCC
Confidence 5689999987 79999999654 33 24333 24567777763
No 349
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=23.42 E-value=1.1e+02 Score=26.01 Aligned_cols=74 Identities=20% Similarity=0.081 Sum_probs=45.9
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHHHHHhCCCcEEEEEccCC---------------HHHHHHHHHHHcCCCCCCcccEEE
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVGVDERDISMD---------------SSYRKELQDLLGVEGKAITLPQVF 281 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~ydErDVsmD---------------~e~reEL~elLg~~tg~~TVPqVF 281 (366)
||++...|.+..+.|..--..+++.|++.|+.++.+|+... .+..+++.+.+.+..+ .||
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~-----iI~ 76 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADG-----IIF 76 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSE-----EEE
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCe-----EEE
Confidence 57777777765444445566788888888999999999763 1233455555543331 245
Q ss_pred eCCEEEccchHHHH
Q 017790 282 IRGKHIGGAEEIKQ 295 (366)
Q Consensus 282 VdG~~IGGaDEv~~ 295 (366)
+-=.|.|+.--.++
T Consensus 77 ~sP~y~~~~s~~lK 90 (152)
T PF03358_consen 77 ASPVYNGSVSGQLK 90 (152)
T ss_dssp EEEEBTTBE-HHHH
T ss_pred eecEEcCcCChhhh
Confidence 55566777765433
No 350
>PRK04011 peptide chain release factor 1; Provisional
Probab=23.37 E-value=53 Score=34.10 Aligned_cols=54 Identities=24% Similarity=0.458 Sum_probs=38.5
Q ss_pred CCEEEccchHHHHHHhcCcHHHHh--cCCCCcccccccccCCccce-----------eeCCCCCCCc
Q 017790 283 RGKHIGGAEEIKQLNETGDLAMLL--KGFPVVNAVSVCESCGDARF-----------VPCSHCCGSR 336 (366)
Q Consensus 283 dG~~IGGaDEv~~L~EsGeL~kLL--~~~~~~~~~~~C~~CGg~rf-----------vpC~~C~GS~ 336 (366)
+|..+-|.++|.+..+.|-.+.|| +.+.+......|..||-..- -.|+.|++..
T Consensus 294 ~g~avyG~~~V~~Ale~GAVetLLV~d~l~~~r~~~~c~~c~~~~~~~~~~~~~~~~~~c~~~~~~~ 360 (411)
T PRK04011 294 GGLAVYGEEEVRKALEMGAVDTLLISEDLRKDRVTYKCPNCGYEEEKTVKRREELPEKTCPKCGSEL 360 (411)
T ss_pred CCcEEEcHHHHHHHHHcCCceEEEEeccccceeEEEEcCCCCcceeeecccccccccccCcccCccc
Confidence 367889999999999999999986 34544444566888875432 2566666653
No 351
>PRK04023 DNA polymerase II large subunit; Validated
Probab=23.31 E-value=54 Score=38.24 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=10.7
Q ss_pred HHHHHHHhCCCcEEE
Q 017790 237 SVRMIFKSYRVGVDE 251 (366)
Q Consensus 237 raK~IL~~~gV~ydE 251 (366)
.+|.+|+.++|+...
T Consensus 506 ~~k~~LE~L~v~H~~ 520 (1121)
T PRK04023 506 GVKRILEKLGVPHRV 520 (1121)
T ss_pred HHHHHHHHhCCceEe
Confidence 677888888877543
No 352
>PRK00420 hypothetical protein; Validated
Probab=22.93 E-value=48 Score=28.88 Aligned_cols=11 Identities=9% Similarity=-0.007 Sum_probs=7.9
Q ss_pred ccccCCccccC
Q 017790 345 QLRRCTNCNEN 355 (366)
Q Consensus 345 ~~~rC~~CNEN 355 (366)
+...||.|.+.
T Consensus 39 g~~~Cp~Cg~~ 49 (112)
T PRK00420 39 GEVVCPVHGKV 49 (112)
T ss_pred CceECCCCCCe
Confidence 46688888873
No 353
>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.92 E-value=46 Score=31.68 Aligned_cols=40 Identities=28% Similarity=0.634 Sum_probs=26.0
Q ss_pred ccccccccCCccceeeCCCCCCCceeeecCCC--c--cccCCccccC
Q 017790 313 NAVSVCESCGDARFVPCSHCCGSRKVFDEEDG--Q--LRRCTNCNEN 355 (366)
Q Consensus 313 ~~~~~C~~CGg~rfvpC~~C~GS~Kv~~e~~~--~--~~rC~~CNEN 355 (366)
.+...|.+||+.|--. |+|.-++-..+.. . .-||..||..
T Consensus 15 q~~k~C~~Cg~kr~f~---cSg~fRvNAq~K~LDvWlIYkC~~Cd~t 58 (203)
T COG4332 15 QPAKRCNSCGVKRAFT---CSGKFRVNAQGKVLDVWLIYKCTHCDYT 58 (203)
T ss_pred hhhhhCcccCCcceee---ecCcEEEcCCCcEEEEEEEEEeeccCCc
Confidence 3456899999998764 5676665433211 1 2399999864
No 354
>KOG3217 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=22.91 E-value=79 Score=29.19 Aligned_cols=72 Identities=19% Similarity=0.142 Sum_probs=45.7
Q ss_pred CCCcEEEEEeCCCCCCCCCchHHHHHHHHHhCCCc------------EEEEE--ccCCHHHHHHHHHHHcC---------
Q 017790 214 SNNKIVIYFTSLRGIRRTYEDCCSVRMIFKSYRVG------------VDERD--ISMDSSYRKELQDLLGV--------- 270 (366)
Q Consensus 214 ~~~kVVVYTTSL~gIRKT~~dC~raK~IL~~~gV~------------ydErD--VsmD~e~reEL~elLg~--------- 270 (366)
+...+.=|-++-+ +=.|+.++|+.+||+ |.++| +.||+...++|.+..+.
T Consensus 43 DSagt~~yh~G~~-------PD~R~~s~lK~hGI~~~H~aRqit~~DF~~FDYI~~MDesN~~dL~~~a~~~~~~~kakV 115 (159)
T KOG3217|consen 43 DSAGTSGYHTGRS-------PDPRTLSILKKHGIKIDHLARQITTSDFREFDYILAMDESNLRDLLRKASNQPKGSKAKV 115 (159)
T ss_pred ccccccccccCCC-------CChHHHHHHHHcCCcchhhcccccHhHhhhcceeEEecHHHHHHHHHHhccCCCCcceEE
Confidence 4444555655432 234788999999987 34555 57998877777764221
Q ss_pred ----CCCCCcccEEEeCCEEEccchHHH
Q 017790 271 ----EGKAITLPQVFIRGKHIGGAEEIK 294 (366)
Q Consensus 271 ----~tg~~TVPqVFVdG~~IGGaDEv~ 294 (366)
..+... +.||+.-|-||..+..
T Consensus 116 ~Llgsy~~~~--~~~I~DPyYg~~~~Fe 141 (159)
T KOG3217|consen 116 LLLGSYDKNG--QKIIEDPYYGGDSKFE 141 (159)
T ss_pred EEeeccCCCC--CeecCCCCCCccccHH
Confidence 001222 7899999988887653
No 355
>PF04236 Transp_Tc5_C: Tc5 transposase C-terminal domain; InterPro: IPR007350 This domain corresponds to a C-terminal cysteine rich region that probably binds to a metal ion and could be DNA-binding. It is found in association with the DDE superfamily (IPR004875 from INTERPRO) and the Tc5 transposase family (IPR004906 from INTERPRO). More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=22.89 E-value=48 Score=26.07 Aligned_cols=20 Identities=35% Similarity=0.894 Sum_probs=16.0
Q ss_pred ccccCCc--cccCccccCCCCC
Q 017790 345 QLRRCTN--CNENGLIRCPACS 364 (366)
Q Consensus 345 ~~~rC~~--CNENGLirCp~C~ 364 (366)
....|.. |++.+.|+|+-|.
T Consensus 26 ~~~~C~~~gC~~~s~I~C~~Ck 47 (63)
T PF04236_consen 26 VAGDCDITGCNNTSFIRCAYCK 47 (63)
T ss_pred CcCcCCCCCCCCcCEEEccccC
Confidence 3567877 9999999998885
No 356
>PTZ00062 glutaredoxin; Provisional
Probab=22.81 E-value=2.3e+02 Score=26.77 Aligned_cols=54 Identities=9% Similarity=0.127 Sum_probs=30.7
Q ss_pred CCcEEEEE-eCCCCCCCCCchHHHHHHHHHhCCC---cEEEEEccCCHHHHHHHHHHHcCCCCCCcccEE--EeCCEEEc
Q 017790 215 NNKIVIYF-TSLRGIRRTYEDCCSVRMIFKSYRV---GVDERDISMDSSYRKELQDLLGVEGKAITLPQV--FIRGKHIG 288 (366)
Q Consensus 215 ~~kVVVYT-TSL~gIRKT~~dC~raK~IL~~~gV---~ydErDVsmD~e~reEL~elLg~~tg~~TVPqV--FVdG~~IG 288 (366)
.+.+|+|+ .+|| ++|..+..+|..+-- .+....|+.| ++ ...+|.+ |=+|+.|+
T Consensus 17 ~g~~vl~f~a~w~------~~C~~m~~vl~~l~~~~~~~~F~~V~~d----------~~----V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 17 TGKLVLYVKSSKE------PEYEQLMDVCNALVEDFPSLEFYVVNLA----------DA----NNEYGVFEFYQNSQLIN 76 (204)
T ss_pred CCcEEEEEeCCCC------cchHHHHHHHHHHHHHCCCcEEEEEccc----------cC----cccceEEEEEECCEEEe
Confidence 35677776 5555 599987777665432 2344444433 22 4678855 34676554
No 357
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=22.69 E-value=38 Score=26.53 Aligned_cols=9 Identities=44% Similarity=1.054 Sum_probs=6.7
Q ss_pred CCCCCCCCc
Q 017790 1 MGCTASRPN 9 (366)
Q Consensus 1 ~~~~~~~~~ 9 (366)
|||+.||-+
T Consensus 1 MGC~~SK~d 9 (60)
T PF04783_consen 1 MGCSQSKLD 9 (60)
T ss_pred CCCCccccc
Confidence 788888763
No 358
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=22.62 E-value=29 Score=39.61 Aligned_cols=43 Identities=26% Similarity=0.743 Sum_probs=0.0
Q ss_pred ccccccCCccce-eeCCCCCCCceeeecCCCccccCCccccC-ccccCCCCC
Q 017790 315 VSVCESCGDARF-VPCSHCCGSRKVFDEEDGQLRRCTNCNEN-GLIRCPACS 364 (366)
Q Consensus 315 ~~~C~~CGg~rf-vpC~~C~GS~Kv~~e~~~~~~rC~~CNEN-GLirCp~C~ 364 (366)
...|..||-..| ..|+.|.+.... ..+|+.|+.. .--.||.|.
T Consensus 655 ~r~Cp~Cg~~t~~~~Cp~CG~~T~~-------~~~Cp~C~~~~~~~~C~~C~ 699 (900)
T PF03833_consen 655 RRRCPKCGKETFYNRCPECGSHTEP-------VYVCPDCGIEVEEDECPKCG 699 (900)
T ss_dssp ----------------------------------------------------
T ss_pred cccCcccCCcchhhcCcccCCcccc-------ceeccccccccCcccccccc
Confidence 467999998876 689999877432 3477777643 223677774
No 359
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=22.12 E-value=42 Score=39.23 Aligned_cols=38 Identities=29% Similarity=0.800 Sum_probs=26.3
Q ss_pred ccccccCCcc--------ceeeCCCCCCC-ce---eeecCCCccccCCccc
Q 017790 315 VSVCESCGDA--------RFVPCSHCCGS-RK---VFDEEDGQLRRCTNCN 353 (366)
Q Consensus 315 ~~~C~~CGg~--------rfvpC~~C~GS-~K---v~~e~~~~~~rC~~CN 353 (366)
+..|.-||+. =||.|-+|.=. || -|.++ .+-.-||.|+
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~-eG~q~CPqCk 66 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERK-DGNQSCPQCK 66 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhh-cCCccCCccC
Confidence 5689999988 89999999644 33 34443 2455777776
No 360
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=22.09 E-value=48 Score=28.26 Aligned_cols=7 Identities=43% Similarity=1.203 Sum_probs=3.9
Q ss_pred ccCCCCC
Q 017790 358 IRCPACS 364 (366)
Q Consensus 358 irCp~C~ 364 (366)
+.|+.|.
T Consensus 43 ~~C~~CG 49 (99)
T PRK14892 43 ITCGNCG 49 (99)
T ss_pred EECCCCC
Confidence 4566664
No 361
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=22.04 E-value=47 Score=28.40 Aligned_cols=23 Identities=26% Similarity=0.746 Sum_probs=17.7
Q ss_pred ccccccCCccce------eeCCCCCCCce
Q 017790 315 VSVCESCGDARF------VPCSHCCGSRK 337 (366)
Q Consensus 315 ~~~C~~CGg~rf------vpC~~C~GS~K 337 (366)
..+|+-||+.+| +.|-.|+-.-.
T Consensus 35 ~daCeiC~~~GY~q~g~~lvC~~C~~~~~ 63 (102)
T PF10080_consen 35 FDACEICGPKGYYQEGDQLVCKNCGVRFN 63 (102)
T ss_pred EEeccccCCCceEEECCEEEEecCCCEEe
Confidence 467999999988 77888876543
No 362
>PTZ00102 disulphide isomerase; Provisional
Probab=21.97 E-value=2.2e+02 Score=28.85 Aligned_cols=52 Identities=17% Similarity=0.351 Sum_probs=31.0
Q ss_pred cEEEEEeCCCCCCCCCchHHHHHH-------HHHhC--CCcEEEEEccCCHHHHHHHHHHHcCCCCCCcccEEEe
Q 017790 217 KIVIYFTSLRGIRRTYEDCCSVRM-------IFKSY--RVGVDERDISMDSSYRKELQDLLGVEGKAITLPQVFI 282 (366)
Q Consensus 217 kVVVYTTSL~gIRKT~~dC~raK~-------IL~~~--gV~ydErDVsmD~e~reEL~elLg~~tg~~TVPqVFV 282 (366)
-+|.|+++||+ .|.++.. .|... .|.+..+|.+.+. ++.+.++ ...+|.+++
T Consensus 52 ~lv~f~a~wC~------~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~----~l~~~~~----i~~~Pt~~~ 112 (477)
T PTZ00102 52 VLVKFYAPWCG------HCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM----ELAQEFG----VRGYPTIKF 112 (477)
T ss_pred EEEEEECCCCH------HHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH----HHHHhcC----CCcccEEEE
Confidence 46777777775 7875443 23333 3667777776553 4545454 457887743
No 363
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.91 E-value=64 Score=33.89 Aligned_cols=13 Identities=38% Similarity=0.922 Sum_probs=9.6
Q ss_pred ccCCccccCcccc
Q 017790 347 RRCTNCNENGLIR 359 (366)
Q Consensus 347 ~rC~~CNENGLir 359 (366)
-.|+.||||-|..
T Consensus 248 ~~Cp~C~~~~L~~ 260 (457)
T KOG2324|consen 248 ASCPKCNEGRLTK 260 (457)
T ss_pred ccCCcccCCCccc
Confidence 5788888886653
No 364
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=21.80 E-value=86 Score=25.36 Aligned_cols=12 Identities=8% Similarity=0.011 Sum_probs=6.3
Q ss_pred CchHHHHHHHHH
Q 017790 232 YEDCCSVRMIFK 243 (366)
Q Consensus 232 ~~dC~raK~IL~ 243 (366)
|..|......|.
T Consensus 32 C~~C~~~~~~l~ 43 (123)
T cd03011 32 CPVCRFTSPTVN 43 (123)
T ss_pred ChhhhhhChHHH
Confidence 347885443333
No 365
>PF09369 DUF1998: Domain of unknown function (DUF1998); InterPro: IPR018973 This entry represents a family of DEAD/DEAH-box-containing family of helicases. It includes Hrq1 from Saccharomyces, a putative RecQ helicase []. RecQ helicases are involved in maintaining genomic integrity.
Probab=21.69 E-value=22 Score=28.20 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=31.5
Q ss_pred CcccEEEeCCEEEccchHHHHHHhcCcHHHHhcCCC
Q 017790 275 ITLPQVFIRGKHIGGAEEIKQLNETGDLAMLLKGFP 310 (366)
Q Consensus 275 ~TVPqVFVdG~~IGGaDEv~~L~EsGeL~kLL~~~~ 310 (366)
...|.||+-...-||+--+.+|.+...+.++|+.+-
T Consensus 33 ~~~~~i~lyD~~~GG~G~~~~l~~~~~~~~ll~~A~ 68 (84)
T PF09369_consen 33 QGPPRIFLYDTVPGGAGYAERLFERERFEELLRRAL 68 (84)
T ss_pred CCccEEEEEECCCCchhhHhhhcChhHHHHHHHHHH
Confidence 567999999999999999999988888999997754
No 366
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=20.65 E-value=1.1e+02 Score=32.05 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCCCc-------EEEEEccCCHHHHHHHHHHHc
Q 017790 235 CCSVRMIFKSYRVG-------VDERDISMDSSYRKELQDLLG 269 (366)
Q Consensus 235 C~raK~IL~~~gV~-------ydErDVsmD~e~reEL~elLg 269 (366)
-.+|+.|.++++++ +|.+|.. +++.+++|.+.|.
T Consensus 313 leAa~EIaRQlRLRnigGiIvIDFIdM~-~~~~~~~v~~~l~ 353 (414)
T TIGR00757 313 LEAAKEIARQLRLRNLGGIIIIDFIDMK-SEKNQRRVLERLK 353 (414)
T ss_pred HHHHHHHHHHHhhcCCCCeEEEECCCCC-CHHHHHHHHHHHH
Confidence 33688888777655 4555543 3456655554443
No 367
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=20.55 E-value=51 Score=32.64 Aligned_cols=17 Identities=47% Similarity=1.192 Sum_probs=0.0
Q ss_pred ccCCcccc---------CccccCCCC
Q 017790 347 RRCTNCNE---------NGLIRCPAC 363 (366)
Q Consensus 347 ~rC~~CNE---------NGLirCp~C 363 (366)
+.|..|++ |+|.|||.|
T Consensus 158 v~CghC~~~Fl~~~~~~~tlARCPHC 183 (256)
T PF09788_consen 158 VICGHCSNTFLFNTLTSNTLARCPHC 183 (256)
T ss_pred EECCCCCCcEeccCCCCCccccCCCC
No 368
>PRK14873 primosome assembly protein PriA; Provisional
Probab=20.21 E-value=68 Score=35.52 Aligned_cols=36 Identities=22% Similarity=0.578 Sum_probs=24.0
Q ss_pred cccccccCCc-------cceeeCCCCCCCceeeecCCCccccCCccccCcc
Q 017790 314 AVSVCESCGD-------ARFVPCSHCCGSRKVFDEEDGQLRRCTNCNENGL 357 (366)
Q Consensus 314 ~~~~C~~CGg-------~rfvpC~~C~GS~Kv~~e~~~~~~rC~~CNENGL 357 (366)
....|..|++ .+.+.|.+|+-.. .-.+||+|...-|
T Consensus 391 ~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~--------~p~~Cp~Cgs~~l 433 (665)
T PRK14873 391 TPARCRHCTGPLGLPSAGGTPRCRWCGRAA--------PDWRCPRCGSDRL 433 (665)
T ss_pred CeeECCCCCCceeEecCCCeeECCCCcCCC--------cCccCCCCcCCcc
Confidence 3467888884 3457799998531 1348999987644
Done!