BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017792
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UBC|A Chain A, Structure Of Reca Protein
pdb|1UBE|A Chain A, Msreca-Adp Complex
pdb|1UBF|A Chain A, Msreca-Atpgs Complex
pdb|1UBG|A Chain A, Msreca-Datp Complex
pdb|2G88|A Chain A, Msreca-datp Complex
pdb|2ODN|A Chain A, Msreca-Datp Complex
pdb|2ODW|A Chain A, Msreca-Atp-Gama-S Complex
pdb|2OE2|A Chain A, Msreca-Native-Low Humidity 95%
pdb|2OEP|A Chain A, Msreca-adp-complex
pdb|2OES|A Chain A, Msreca-Native-Ssb
pdb|2OFO|A Chain A, Msreca-native
pdb|2ZR7|A Chain A, Msreca Native Form Ii'
pdb|2ZRM|A Chain A, Msreca Datp Form Iv
pdb|2ZRN|A Chain A, Msreca Form Iv
pdb|2ZRO|A Chain A, Msreca Adp Form Iv
pdb|2ZRP|A Chain A, Msreca Datp Form Ii'
Length = 349
Score = 349 bits (895), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 171/325 (52%), Positives = 236/325 (72%), Gaps = 4/325 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
++ AL+ A+ QI +FGKGS+M LG V + + V+ TGS +LD+ALG GGLP+GRV+EI
Sbjct: 8 REKALELAMAQIDKNFGKGSVMRLGEEVR-QPISVIPTGSISLDVALGIGGLPRGRVIEI 66
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTT+ALH +A AQ GG FIDAEHALDP A+ +GV T++LL++QPD GEQ
Sbjct: 67 YGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ 126
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L+RSG LVP+ E++GEMGD+H+ +QARLMSQALRK++ +L+
Sbjct: 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNN 186
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T IFINQ+R K+ FG P E T GG ALKFYASVRL+++RI +K G + +G++
Sbjct: 187 SGTTAIFINQLREKIGVM-FGSP-ETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK++PPFK A+F++ +G+GISRE +ID+ ++H F K+G+ FTY +GK
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304
Query: 303 EAFKQFLVENESVREELVIKLREKL 327
E ++FL+EN V E+ K++EKL
Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKL 329
>pdb|2ZR0|A Chain A, Msreca-Q196e Mutant
pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv
pdb|2ZRA|A Chain A, Msreca Q196e Atpgs
pdb|2ZRB|A Chain A, Msreca Q196e Form Ii'
Length = 349
Score = 347 bits (891), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 170/325 (52%), Positives = 236/325 (72%), Gaps = 4/325 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
++ AL+ A+ QI +FGKGS+M LG V + + V+ TGS +LD+ALG GGLP+GRV+EI
Sbjct: 8 REKALELAMAQIDKNFGKGSVMRLGEEVR-QPISVIPTGSISLDVALGIGGLPRGRVIEI 66
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTT+ALH +A AQ GG FIDAEHALDP A+ +GV T++LL++QPD GEQ
Sbjct: 67 YGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ 126
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L+RSG LVP+ E++GEMGD+H+ +QARLMSQALRK++ +L+
Sbjct: 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNN 186
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T IFIN++R K+ FG P E T GG ALKFYASVRL+++RI +K G + +G++
Sbjct: 187 SGTTAIFINELREKIGVM-FGSP-ETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK++PPFK A+F++ +G+GISRE +ID+ ++H F K+G+ FTY +GK
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304
Query: 303 EAFKQFLVENESVREELVIKLREKL 327
E ++FL+EN V E+ K++EKL
Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKL 329
>pdb|2ZRC|A Chain A, Msreca Q196n Form Iv
pdb|2ZRD|A Chain A, Msreca Q196n Adp Form Iv
pdb|2ZRE|A Chain A, Msreca Q196n Atpgs Form Iv
pdb|2ZRF|A Chain A, Msreca Q196n Datp Form Iv
pdb|2ZRG|A Chain A, Msreca Q196n Datp Form Ii'
Length = 349
Score = 347 bits (889), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 170/325 (52%), Positives = 235/325 (72%), Gaps = 4/325 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
++ AL+ A+ QI +FGKGS+M LG V + + V+ TGS +LD+ALG GGLP+GRV+EI
Sbjct: 8 REKALELAMAQIDKNFGKGSVMRLGEEVR-QPISVIPTGSISLDVALGIGGLPRGRVIEI 66
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTT+ALH +A AQ GG FIDAEHALDP A+ +GV T++LL++QPD GEQ
Sbjct: 67 YGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ 126
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L+RSG LVP+ E++GEMGD+H+ +QARLMSQALRK++ +L+
Sbjct: 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNN 186
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T IFIN +R K+ FG P E T GG ALKFYASVRL+++RI +K G + +G++
Sbjct: 187 SGTTAIFINNLREKIGVM-FGSP-ETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK++PPFK A+F++ +G+GISRE +ID+ ++H F K+G+ FTY +GK
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304
Query: 303 EAFKQFLVENESVREELVIKLREKL 327
E ++FL+EN V E+ K++EKL
Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKL 329
>pdb|2ZRH|A Chain A, Msreca Q196a Form Iv
pdb|2ZRI|A Chain A, Msreca Q196a Adp Form Iv
pdb|2ZRJ|A Chain A, Msreca Q196a Atpgs Form Iv
pdb|2ZRK|A Chain A, Msreca Q196a Datp Form Iv
pdb|2ZRL|A Chain A, Msreca Q196a Datp Form Ii'
Length = 349
Score = 347 bits (889), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 170/325 (52%), Positives = 235/325 (72%), Gaps = 4/325 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
++ AL+ A+ QI +FGKGS+M LG V + + V+ TGS +LD+ALG GGLP+GRV+EI
Sbjct: 8 REKALELAMAQIDKNFGKGSVMRLGEEVR-QPISVIPTGSISLDVALGIGGLPRGRVIEI 66
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTT+ALH +A AQ GG FIDAEHALDP A+ +GV T++LL++QPD GEQ
Sbjct: 67 YGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ 126
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L+RSG LVP+ E++GEMGD+H+ +QARLMSQALRK++ +L+
Sbjct: 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNN 186
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T IFIN +R K+ FG P E T GG ALKFYASVRL+++RI +K G + +G++
Sbjct: 187 SGTTAIFINALREKIGVM-FGSP-ETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK++PPFK A+F++ +G+GISRE +ID+ ++H F K+G+ FTY +GK
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304
Query: 303 EAFKQFLVENESVREELVIKLREKL 327
E ++FL+EN V E+ K++EKL
Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKL 329
>pdb|3CMU|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 2050
Score = 340 bits (873), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 176/326 (53%), Positives = 223/326 (68%), Gaps = 4/326 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+VEI
Sbjct: 330 KQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVEI 388
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD GEQ
Sbjct: 389 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 448
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L RSG L PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 508
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +GS+
Sbjct: 509 SNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 566
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y +GK
Sbjct: 567 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 626
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
+L +N +E+ K+RE L+
Sbjct: 627 ANATAWLKDNPETAKEIEKKVRELLL 652
Score = 340 bits (873), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 176/326 (53%), Positives = 223/326 (68%), Gaps = 4/326 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+VEI
Sbjct: 679 KQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVEI 737
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD GEQ
Sbjct: 738 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 797
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L RSG L PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 798 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 857
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +GS+
Sbjct: 858 SNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 915
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y +GK
Sbjct: 916 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 975
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
+L +N +E+ K+RE L+
Sbjct: 976 ANATAWLKDNPETAKEIEKKVRELLL 1001
Score = 340 bits (873), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 176/326 (53%), Positives = 223/326 (68%), Gaps = 4/326 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+VEI
Sbjct: 1028 KQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVEI 1086
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD GEQ
Sbjct: 1087 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1146
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L RSG L PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 1147 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1206
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +GS+
Sbjct: 1207 SNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1264
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y +GK
Sbjct: 1265 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1324
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
+L +N +E+ K+RE L+
Sbjct: 1325 ANATAWLKDNPETAKEIEKKVRELLL 1350
Score = 340 bits (873), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 176/326 (53%), Positives = 223/326 (68%), Gaps = 4/326 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+VEI
Sbjct: 1374 KQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVEI 1432
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD GEQ
Sbjct: 1433 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1492
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L RSG L PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 1493 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1552
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +GS+
Sbjct: 1553 SNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1610
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y +GK
Sbjct: 1611 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1670
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
+L +N +E+ K+RE L+
Sbjct: 1671 ANATAWLKDNPETAKEIEKKVRELLL 1696
Score = 340 bits (873), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 176/326 (53%), Positives = 223/326 (68%), Gaps = 4/326 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+VEI
Sbjct: 1722 KQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVEI 1780
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD GEQ
Sbjct: 1781 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1840
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L RSG L PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 1841 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1900
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +GS+
Sbjct: 1901 SNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1958
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y +GK
Sbjct: 1959 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 2018
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
+L +N +E+ K+RE L+
Sbjct: 2019 ANATAWLKDNPETAKEIEKKVRELLL 2044
Score = 321 bits (822), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 160/294 (54%), Positives = 206/294 (70%), Gaps = 3/294 (1%)
Query: 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95
V +STGS +LDIALG GGLP GR+VEIYGPE+SGKTTL L VIA AQR+G C FIDAE
Sbjct: 12 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71
Query: 96 HALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELD 155
HALDP A +GV +NLL +QPD GEQAL + D L RSG L PK E++
Sbjct: 72 HALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 131
Query: 156 GEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNA 215
GE+GD+HM + AR+MSQA+RKL+ +L S T+LIFINQ+R K+ FG P E T GGNA
Sbjct: 132 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM-FGNP-ETTTGGNA 189
Query: 216 LKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEI 275
LKFYASVRL+I+RIG VK+GE +GS+ VK+VKNK+A PFK A+F++ +G+GI+ E+
Sbjct: 190 LKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGEL 249
Query: 276 IDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIKLREKLV 328
+DL +K K KAGA ++Y +GK +L +N +E+ K+RE L+
Sbjct: 250 VDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL 303
>pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
pdb|1G19|A Chain A, Structure Of Reca Protein
pdb|1MO3|A Chain A, Reca-Adp Complex
pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex
pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex
pdb|1MO6|A Chain A, Reca-datp-mg Complex
Length = 350
Score = 340 bits (873), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 171/325 (52%), Positives = 228/325 (70%), Gaps = 4/325 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
++ AL+ A+ QI S+GKGS+M LG + + V+ TGS ALD+ALG GGLP+GRV+EI
Sbjct: 7 REKALELAVAQIEKSYGKGSVMRLGDEAR-QPISVIPTGSIALDVALGIGGLPRGRVIEI 65
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTT+ALH +A AQ GG FIDAEHALDP A+ +GV T++LL++QPD GEQ
Sbjct: 66 YGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQ 125
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D LIRSG LVP+ EL+GEMGD+H+ +QARLMSQALRK++ +L+
Sbjct: 126 ALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNN 185
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T IFINQ+R K+ FG P E T GG ALKFYASVR++++R+ +K G +G++
Sbjct: 186 SGTTAIFINQLRDKIGVM-FGSP-ETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK PFK A+F++ +GKGISRE +ID+ + K+GA FTY +GK
Sbjct: 244 RVKVVKNKCLAPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGK 303
Query: 303 EAFKQFLVENESVREELVIKLREKL 327
E + FLVEN V +E+ K++EKL
Sbjct: 304 ENARNFLVENADVADEIEKKIKEKL 328
>pdb|3CMT|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMT|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1706
Score = 340 bits (872), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 176/326 (53%), Positives = 223/326 (68%), Gaps = 4/326 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+VEI
Sbjct: 330 KQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVEI 388
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD GEQ
Sbjct: 389 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 448
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L RSG L PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 508
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +GS+
Sbjct: 509 SNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 566
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y +GK
Sbjct: 567 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 626
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
+L +N +E+ K+RE L+
Sbjct: 627 ANATAWLKDNPETAKEIEKKVRELLL 652
Score = 340 bits (872), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 176/326 (53%), Positives = 223/326 (68%), Gaps = 4/326 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+VEI
Sbjct: 679 KQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVEI 737
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD GEQ
Sbjct: 738 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 797
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L RSG L PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 798 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 857
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +GS+
Sbjct: 858 SNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 915
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y +GK
Sbjct: 916 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 975
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
+L +N +E+ K+RE L+
Sbjct: 976 ANATAWLKDNPETAKEIEKKVRELLL 1001
Score = 340 bits (872), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 176/326 (53%), Positives = 223/326 (68%), Gaps = 4/326 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+VEI
Sbjct: 1029 KQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVEI 1087
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD GEQ
Sbjct: 1088 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1147
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L RSG L PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 1148 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1207
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +GS+
Sbjct: 1208 SNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1265
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y +GK
Sbjct: 1266 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1325
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
+L +N +E+ K+RE L+
Sbjct: 1326 ANATAWLKDNPETAKEIEKKVRELLL 1351
Score = 340 bits (872), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 176/326 (53%), Positives = 223/326 (68%), Gaps = 4/326 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+VEI
Sbjct: 1378 KQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVEI 1436
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD GEQ
Sbjct: 1437 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1496
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L RSG L PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 1497 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1556
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +GS+
Sbjct: 1557 SNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1614
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y +GK
Sbjct: 1615 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1674
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
+L +N +E+ K+RE L+
Sbjct: 1675 ANATAWLKDNPETAKEIEKKVRELLL 1700
Score = 320 bits (821), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 160/294 (54%), Positives = 206/294 (70%), Gaps = 3/294 (1%)
Query: 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95
V +STGS +LDIALG GGLP GR+VEIYGPE+SGKTTL L VIA AQR+G C FIDAE
Sbjct: 12 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71
Query: 96 HALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELD 155
HALDP A +GV +NLL +QPD GEQAL + D L RSG L PK E++
Sbjct: 72 HALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 131
Query: 156 GEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNA 215
GE+GD+HM + AR+MSQA+RKL+ +L S T+LIFINQ+R K+ FG P E T GGNA
Sbjct: 132 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM-FGNP-ETTTGGNA 189
Query: 216 LKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEI 275
LKFYASVRL+I+RIG VK+GE +GS+ VK+VKNK+A PFK A+F++ +G+GI+ E+
Sbjct: 190 LKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGEL 249
Query: 276 IDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIKLREKLV 328
+DL +K K KAGA ++Y +GK +L +N +E+ K+RE L+
Sbjct: 250 VDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL 303
>pdb|3CMV|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|B Chain B, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|E Chain E, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|F Chain F, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|G Chain G, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|H Chain H, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1357
Score = 340 bits (872), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 176/326 (53%), Positives = 223/326 (68%), Gaps = 4/326 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+VEI
Sbjct: 330 KQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVEI 388
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD GEQ
Sbjct: 389 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 448
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L RSG L PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 508
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +GS+
Sbjct: 509 SNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 566
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y +GK
Sbjct: 567 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 626
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
+L +N +E+ K+RE L+
Sbjct: 627 ANATAWLKDNPETAKEIEKKVRELLL 652
Score = 340 bits (872), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 176/326 (53%), Positives = 223/326 (68%), Gaps = 4/326 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+VEI
Sbjct: 679 KQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVEI 737
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD GEQ
Sbjct: 738 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 797
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L RSG L PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 798 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 857
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +GS+
Sbjct: 858 SNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 915
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y +GK
Sbjct: 916 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 975
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
+L +N +E+ K+RE L+
Sbjct: 976 ANATAWLKDNPETAKEIEKKVRELLL 1001
Score = 340 bits (872), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 176/326 (53%), Positives = 223/326 (68%), Gaps = 4/326 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+VEI
Sbjct: 1029 KQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVEI 1087
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD GEQ
Sbjct: 1088 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1147
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L RSG L PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 1148 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1207
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +GS+
Sbjct: 1208 SNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1265
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y +GK
Sbjct: 1266 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1325
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
+L +N +E+ K+RE L+
Sbjct: 1326 ANATAWLKDNPETAKEIEKKVRELLL 1351
Score = 320 bits (820), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 160/294 (54%), Positives = 206/294 (70%), Gaps = 3/294 (1%)
Query: 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95
V +STGS +LDIALG GGLP GR+VEIYGPE+SGKTTL L VIA AQR+G C FIDAE
Sbjct: 12 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71
Query: 96 HALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELD 155
HALDP A +GV +NLL +QPD GEQAL + D L RSG L PK E++
Sbjct: 72 HALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 131
Query: 156 GEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNA 215
GE+GD+HM + AR+MSQA+RKL+ +L S T+LIFINQ+R K+ FG P E T GGNA
Sbjct: 132 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM-FGNP-ETTTGGNA 189
Query: 216 LKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEI 275
LKFYASVRL+I+RIG VK+GE +GS+ VK+VKNK+A PFK A+F++ +G+GI+ E+
Sbjct: 190 LKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGEL 249
Query: 276 IDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIKLREKLV 328
+DL +K K KAGA ++Y +GK +L +N +E+ K+RE L+
Sbjct: 250 VDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL 303
>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
Length = 353
Score = 340 bits (871), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 176/327 (53%), Positives = 223/327 (68%), Gaps = 4/327 (1%)
Query: 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVE 62
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+VE
Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVE 64
Query: 63 IYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 122
IYGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD GE
Sbjct: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124
Query: 123 QALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 182
QAL + D L RSG L PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184
Query: 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242
S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +GS+
Sbjct: 185 QSNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 242
Query: 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RG 301
VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y +G
Sbjct: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302
Query: 302 KEAFKQFLVENESVREELVIKLREKLV 328
K +L +N +E+ K+RE L+
Sbjct: 303 KANATAWLKDNPETAKEIEKKVRELLL 329
>pdb|1N03|A Chain A, Model For Active Reca Filament
pdb|1N03|B Chain B, Model For Active Reca Filament
pdb|1N03|C Chain C, Model For Active Reca Filament
pdb|1N03|D Chain D, Model For Active Reca Filament
pdb|1N03|E Chain E, Model For Active Reca Filament
pdb|1N03|F Chain F, Model For Active Reca Filament
pdb|1N03|G Chain G, Model For Active Reca Filament
pdb|1REA|A Chain A, Structure Of The Reca Protein-Adp Complex
pdb|2REB|A Chain A, The Structure Of The E. Coli Reca Protein Monomer And
Polymer
Length = 352
Score = 340 bits (871), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 176/327 (53%), Positives = 223/327 (68%), Gaps = 4/327 (1%)
Query: 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVE 62
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+VE
Sbjct: 5 NKQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVE 63
Query: 63 IYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 122
IYGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD GE
Sbjct: 64 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 123
Query: 123 QALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 182
QAL + D L RSG L PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 124 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 183
Query: 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242
S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +GS+
Sbjct: 184 QSNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 241
Query: 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RG 301
VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y +G
Sbjct: 242 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 301
Query: 302 KEAFKQFLVENESVREELVIKLREKLV 328
K +L +N +E+ K+RE L+
Sbjct: 302 KANATAWLKDNPETAKEIEKKVRELLL 328
>pdb|1U94|A Chain A, Crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form 2
pdb|1U98|A Chain A, "crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form3"
pdb|1U99|A Chain A, "crystal Structures Of E. Coli Reca In A Compressed
Helical Filament Form 4"
pdb|1XMS|A Chain A, "e. Coli Reca In Complex With Mnamp-Pnp"
pdb|1XMV|A Chain A, "e. Coli Reca In Complex With Mgadp"
Length = 356
Score = 339 bits (870), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 176/327 (53%), Positives = 223/327 (68%), Gaps = 4/327 (1%)
Query: 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVE 62
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+VE
Sbjct: 9 NKQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVE 67
Query: 63 IYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 122
IYGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD GE
Sbjct: 68 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 127
Query: 123 QALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 182
QAL + D L RSG L PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 187
Query: 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242
S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +GS+
Sbjct: 188 QSNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 245
Query: 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RG 301
VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y +G
Sbjct: 246 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 305
Query: 302 KEAFKQFLVENESVREELVIKLREKLV 328
K +L +N +E+ K+RE L+
Sbjct: 306 KANATAWLKDNPETAKEIEKKVRELLL 332
>pdb|3HR8|A Chain A, Crystal Structure Of Thermotoga Maritima Reca
Length = 356
Score = 312 bits (799), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 161/332 (48%), Positives = 224/332 (67%), Gaps = 12/332 (3%)
Query: 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVE 62
+K L++AL +I +FGKGSIM LG + V V+ TGS A+DIA G GG P+GR+VE
Sbjct: 6 QKKSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVE 65
Query: 63 IYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 122
I+G E+SGKTTLALH IAEAQ+ GG FIDAEHALDP A+ +GV ++LL++QPD GE
Sbjct: 66 IFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125
Query: 123 QALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 182
QAL +VD L+RSG LVP+ E++G MGD + +QARLMSQALRK++ S++
Sbjct: 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185
Query: 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242
S+ ++IF NQ+R K+ FG P E T GG ALKFYA++R+ ++R +K+G++ IG+
Sbjct: 186 KSKAVVIFTNQIRMKIGVM-FGSP-ETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNV 243
Query: 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNFRGK 302
I+VKIVKNK+APPFKTAQ + +GKGI RE E+ ++A+ + G+ + Y +G+
Sbjct: 244 ISVKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVNEGIVDRKGSWYYYT--TLKGE 301
Query: 303 EA--------FKQFLVENESVREELVIKLREK 326
E QFL +N + E+ ++REK
Sbjct: 302 EVSLGQGSSNAVQFLKDNPEIAGEIERRIREK 333
>pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S"
Length = 366
Score = 299 bits (766), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 154/315 (48%), Positives = 213/315 (67%), Gaps = 5/315 (1%)
Query: 7 ALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGP 66
A++ A+ QI +FGKGSIM LG + + V VVSTGS +LD+ALG GG+P+GR+ EIYGP
Sbjct: 24 AIETAMSQIEKAFGKGSIMKLG-AESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGP 82
Query: 67 EASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALS 126
E+ GKTTLAL ++A+AQ+ GG C FIDAEHALDP A +GV T+ LL++QPD GEQAL
Sbjct: 83 ESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALE 142
Query: 127 LVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 186
+++ L+RSG L P+ E++G+MGD+ +QARLMSQALRKL+ LS + T
Sbjct: 143 IMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGT 202
Query: 187 ILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL-VKKGEETIGSQIAV 245
IFINQVR K+ +G P E T GG ALKFYASVRL++++IG K G + + + + +
Sbjct: 203 AAIFINQVREKIGVM-YGNP-ETTTGGRALKFYASVRLDVRKIGQPTKVGNDAVANTVKI 260
Query: 246 KIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYND-RNFRGKEA 304
K VKNK+A PFK + L +GKG + S+++ LA KAG+ ++Y D R +GKE
Sbjct: 261 KTVKNKVAAPFKEVELALVYGKGFDQLSDLVGLAADMDIIKKAGSFYSYGDERIGQGKEK 320
Query: 305 FKQFLVENESVREEL 319
++ E + +E+
Sbjct: 321 TIAYIAERPEMEQEI 335
>pdb|3IO5|A Chain A, Crystal Structure Of A Dimeric Form Of The Uvsx
Recombinase Core Domain From Enterobacteria Phage T4
pdb|3IO5|B Chain B, Crystal Structure Of A Dimeric Form Of The Uvsx
Recombinase Core Domain From Enterobacteria Phage T4
Length = 333
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 110/263 (41%), Gaps = 16/263 (6%)
Query: 35 HVPVVSTGSFALDIALG---TGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYC 89
H+ VV T ++IAL TGG+ G ++ + GP S K+ L +++ RQ C
Sbjct: 3 HMDVVRTKIPMMNIALSGEITGGMQSGLLI-LAGPSKSFKSNFGLTMVSSYMRQYPDAVC 61
Query: 90 VFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ-ALSLVDTL--IRSGXXXXXXXXXXX 146
+F D+E + P+ ++GV E ++ EQ + +V+ L I G
Sbjct: 62 LFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLG 121
Query: 147 XLVPKGELDGEMGDAHMA--MQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFG 204
L K E + + + ++ +A+ M R ++ S I IN F
Sbjct: 122 NLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYETQEMF--- 178
Query: 205 GPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELE 264
++ GG Y++ + I +K G + G Q + + K++ +++
Sbjct: 179 --SKTVMGGGTGPMYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVK 236
Query: 265 FGKGISRESEIIDLALKHKFASK 287
F GI S ++D+AL+ F K
Sbjct: 237 FDGGIDPYSGLLDMALELGFVVK 259
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97
++STG+ +LD LG GG G + ++YGP ASGKTTLAL G ++D E
Sbjct: 1 MLSTGTKSLDSLLG-GGFAPGVLTQVYGPYASGKTTLALQT---GLLSGKKVAYVDTEGG 56
Query: 98 LDP----SLAETIGVKTENLL 114
P +AET G+ E L
Sbjct: 57 FSPERLVQMAETRGLNPEEAL 77
>pdb|2W0M|A Chain A, Crystal Structure Of Sso2452 From Sulfolobus
Solfataricus P2
Length = 235
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95
V +STG D L GG+P+G + + G +GKT +LH IA+ R G C+++ E
Sbjct: 2 VSRLSTGILDFD-KLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60
Query: 96 HALD 99
+ D
Sbjct: 61 ESRD 64
>pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada
pdb|2ZUB|A Chain A, Left Handed Rada
pdb|2ZUB|B Chain B, Left Handed Rada
pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament
Length = 324
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 91/208 (43%), Gaps = 17/208 (8%)
Query: 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQGGY--- 88
+V +STGS ALD L GG+ + E +G SGKT L + Q +GG
Sbjct: 85 NVKKISTGSQALD-GLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGK 143
Query: 89 CVFIDAEHALD----PSLAETIGVKTENLL----LAQPDCGEQALSLVDTLIRSGXXXXX 140
V+ID E ++A+ +G+ +N++ + + +++VD L
Sbjct: 144 AVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPS 203
Query: 141 XXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLST 200
V G ++A++ + +++ L +L+ + +I NQV A+
Sbjct: 204 IKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDM 263
Query: 201 FGFGGPTEVTCGGNALKFYASVRLNIKR 228
F +G PT V GG+ L +R+ +K+
Sbjct: 264 F-YGDPT-VAVGGHTLYHVPGIRIQLKK 289
>pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal
Structure Of A Crenarchaeal Rada
Length = 324
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 17/208 (8%)
Query: 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQGGY--- 88
+V +STGS ALD L GG+ E +G SGKT L + Q +GG
Sbjct: 85 NVKKISTGSQALD-GLLAGGIETRTXTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGK 143
Query: 89 CVFIDAEHALD----PSLAETIGVKTE----NLLLAQPDCGEQALSLVDTLIRSGXXXXX 140
V+ID E + A+ +G+ + N+ + + +++VD L
Sbjct: 144 AVYIDTEGTFRWERIENXAKALGLDIDNVXNNIYYIRAINTDHQIAIVDDLQELVSKDPS 203
Query: 141 XXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLST 200
V G ++A++ + +++ L +L+ + +I NQV A+
Sbjct: 204 IKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVXARPDX 263
Query: 201 FGFGGPTEVTCGGNALKFYASVRLNIKR 228
F +G PT V GG+ L +R+ +K+
Sbjct: 264 F-YGDPT-VAVGGHTLYHVPGIRIQLKK 289
>pdb|1PZN|A Chain A, Rad51 (Rada)
pdb|1PZN|B Chain B, Rad51 (Rada)
pdb|1PZN|C Chain C, Rad51 (Rada)
pdb|1PZN|D Chain D, Rad51 (Rada)
pdb|1PZN|E Chain E, Rad51 (Rada)
pdb|1PZN|F Chain F, Rad51 (Rada)
pdb|1PZN|G Chain G, Rad51 (Rada)
Length = 349
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 31/213 (14%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIA-------EAQRQGGYCVF 91
+STGS +LD LG GG+ + E++G SGKT LA H +A E G ++
Sbjct: 113 ISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLA-HTLAVXVQLPPEEGGLNGSVIW 170
Query: 92 IDAEHALDP----SLAETIGVKTENLLL-----------AQPDCGEQALSLVDTLIRSGX 136
ID E+ P +A+ G+ + +L Q +QA + L+ +
Sbjct: 171 IDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQXLLVQQAEDKIKELLNTDR 230
Query: 137 XXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFI-NQVR 195
+ E +G +A + + +++ L L H L+ I +F+ NQV+
Sbjct: 231 PVKLLIVDSLTSHFRSEY---IGRGALAERQQKLAKHLADL-HRLANLYDIAVFVTNQVQ 286
Query: 196 AKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228
A+ F FG PT GG+ L A++R+ +++
Sbjct: 287 ARPDAF-FGDPTR-PIGGHILAHSATLRVYLRK 317
>pdb|1V5W|A Chain A, Crystal Structure Of The Human Dmc1 Protein
pdb|1V5W|B Chain B, Crystal Structure Of The Human Dmc1 Protein
Length = 343
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLA--LHVIAEAQRQGGY----CVFI 92
++TGS D LG GG+ + E +G +GKT L+ L V A+ GGY +FI
Sbjct: 104 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI 162
Query: 93 DAEHALDP----SLAETIGVK----TENLLLAQPDCGEQALSLVD 129
D E+ P +A+ V +N+L A+ E + L+D
Sbjct: 163 DTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLD 207
>pdb|2ZJB|A Chain A, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
pdb|2ZJB|B Chain B, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
Length = 343
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLA--LHVIAEAQRQGGY----CVFI 92
++TGS D LG GG+ + E +G +GKT L+ L V A+ GGY +FI
Sbjct: 104 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI 162
Query: 93 DAEHALDP----SLAETIGVK----TENLLLAQPDCGEQALSLVD 129
D E+ P +A+ V +N+L A+ E + L+D
Sbjct: 163 DTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQVELLD 207
>pdb|4A6P|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
pdb|4A6X|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A6X|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A74|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A74|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A7O|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Adp
Length = 231
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIA-------EAQRQGGYCVF 91
+STGS +LD LG GG+ + E++G SGKT LA H +A E G ++
Sbjct: 7 ISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLNGSVIW 64
Query: 92 IDAEHALDP 100
ID E+ P
Sbjct: 65 IDTENTFRP 73
>pdb|1SZP|A Chain A, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|B Chain B, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|C Chain C, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|D Chain D, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|E Chain E, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|F Chain F, A Crystal Structure Of The Rad51 Filament
Length = 321
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVV 61
+K D L +A + F + + RS + ++TGS LD LG GG+ G +
Sbjct: 48 AKADKLLNEAARLVPMGFVTAADFHMRRS----ELICLTTGSKNLDTLLG-GGVETGSIT 102
Query: 62 EIYGPEASGKTTLALHVIAEAQR-------QGGYCVFIDAEHALDP----SLAETIGVKT 110
E++G +GK+ L H +A + G C++ID E P S+A+ G+
Sbjct: 103 ELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDP 161
Query: 111 ENLL 114
++ L
Sbjct: 162 DDAL 165
>pdb|3LDA|A Chain A, Yeast Rad51 H352y Filament Interface Mutant
Length = 400
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVV 61
+K D L +A + F + + RS + ++TGS LD LG GG+ G +
Sbjct: 127 AKADKLLNEAARLVPMGFVTAADFHMRRS----ELICLTTGSKNLDTLLG-GGVETGSIT 181
Query: 62 EIYGPEASGKTTLALHVIA-------EAQRQGGYCVFIDAEHALDP----SLAETIGVKT 110
E++G +GK+ L H +A + G C++ID E P S+A+ G+
Sbjct: 182 ELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDP 240
Query: 111 ENLL 114
++ L
Sbjct: 241 DDAL 244
>pdb|4B2I|A Chain A, Humanised Monomeric Rada In Complex With Indazole
pdb|4B2L|A Chain A, Humanised Monomeric Rada In Complex With L-methylester
Tryptophan
pdb|4B32|A Chain A, Humanised Monomeric Rada In Complex With Napht-1-ol
pdb|4B33|A Chain A, Humanised Monomeric Rada In Complex With Napht-2-ol
pdb|4B34|A Chain A, Humanised Monomeric Rada In Complex With 2-amino
Benzothiazole
pdb|4B35|A Chain A, Humanised Monomeric Rada In Complex With 4-methylester
Indole
pdb|4B3C|A Chain A, Humanised Monomeric Rada In Complex With 5-hydroxy Indole
pdb|4B3D|A Chain A, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3D|C Chain C, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3B|A Chain A, Humanised Monomeric Rada In Complex With Fhta Tetrapeptide
Length = 231
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIA-------EAQRQGGYCVF 91
+STGS +LD LG GG+ + E++G SGKT LA H +A E G ++
Sbjct: 7 ISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLNGSVMW 64
Query: 92 IDAEHALDP 100
ID E+ P
Sbjct: 65 IDTENTFRP 73
>pdb|1AA3|A Chain A, C-Terminal Domain Of The E. Coli Reca, Nmr, Minimized
Average Structure
Length = 63
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 274 EIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIKLREKLV 328
E++DL +K K KAGA ++Y +GK +L +N +E+ K+RE L+
Sbjct: 6 ELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL 61
>pdb|2GDJ|A Chain A, Delta-62 Rada Recombinase In Complex With Amp-Pnp And
Magnesium
Length = 264
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 82/217 (37%), Gaps = 33/217 (15%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLA------------LHVIAEAQRQG 86
+ST S LD LG GGL V E G SGKT + L EA +G
Sbjct: 22 LSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKG 80
Query: 87 GY----CVFIDAEHALDP----SLAETIGVK----TENLLLAQPDCGEQALSL---VDTL 131
V+ID E P +AE G+ +N +A+ + + ++ L
Sbjct: 81 EVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDL 140
Query: 132 IRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFI 191
I+ G + E G +A + + + + + L+ L +++
Sbjct: 141 IQEGNNIKLVVIDSLTSTFRNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLVT 197
Query: 192 NQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228
NQV AK F G E GG+ + A+ R +++
Sbjct: 198 NQVSAKPD--AFFGMAEQAIGGHIVGHAATFRFFVRK 232
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 92
+ TG A+D + G +G+ I G +GKT +A+ I + QG YC+++
Sbjct: 159 LQTGIKAIDSXIPIG---RGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYV 209
>pdb|4DC9|A Chain A, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|B Chain B, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|C Chain C, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|D Chain D, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|E Chain E, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|F Chain F, Hexameric Ring Of Methanococcus Voltae Rada
Length = 266
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 82/217 (37%), Gaps = 33/217 (15%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLA------------LHVIAEAQRQG 86
+ST S LD LG GGL V E G SGKT + L EA +G
Sbjct: 24 LSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKG 82
Query: 87 GY----CVFIDAEHALDP----SLAETIGVK----TENLLLAQPDCGEQALSL---VDTL 131
V+ID E P +AE G+ +N +A+ + + ++ L
Sbjct: 83 EVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDL 142
Query: 132 IRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFI 191
I+ G + E G +A + + + + + L+ L +++
Sbjct: 143 IQEGNNIKLVVIDSLTSTFRNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLVT 199
Query: 192 NQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228
NQV AK F G E GG+ + A+ R +++
Sbjct: 200 NQVSAKPD--AFFGMAEQAIGGHIVGHAATFRFFVRK 234
>pdb|3NTU|A Chain A, Rada Recombinase D302k Mutant In Complex With Amp-Pnp
Length = 319
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 82/217 (37%), Gaps = 33/217 (15%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLA------------LHVIAEAQRQG 86
+ST S LD LG GGL V E G SGKT + L EA +G
Sbjct: 77 LSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKG 135
Query: 87 GY----CVFIDAEHALDP----SLAETIGVK----TENLLLAQPDCGEQALSL---VDTL 131
V+ID E P +AE G+ +N +A+ + + ++ L
Sbjct: 136 EVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDL 195
Query: 132 IRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFI 191
I+ G + E G +A + + + + + L+ L +++
Sbjct: 196 IQEGNNIKLVVIDSLTSTFRNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLVT 252
Query: 192 NQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228
NQV AK F G E GG+ + A+ R +++
Sbjct: 253 NQVSAKPD--AFFGMAEQAIGGHIVGHAATFRFFVRK 287
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified
Dna
Length = 916
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVI-AEAQRQ 85
+V G+ ++ T +PK R+V I G SGK++LA+ I AE QR+
Sbjct: 4 IVVKGARVHNLKNITVRIPKNRLVVITGVSGSGKSSLAMDTIYAEGQRR 52
>pdb|1T4G|A Chain A, Atpase In Complex With Amp-pnp
pdb|1XU4|A Chain A, Atpase In Complex With Amp-Pnp, Magnesium And Potassium
Co-F
pdb|2FPK|A Chain A, Rada Recombinase In Complex With Adp
pdb|2FPL|A Chain A, Rada Recombinase In Complex With Amp-Pnp And Low
Concentration Of K+
pdb|2FPM|A Chain A, Rada Recombinase In Complex With Amp-Pnp And High
Concentration Of K+
pdb|2B21|A Chain A, Rada Recombinase In Complex With Amppnp At Ph 6.0
pdb|2I1Q|A Chain A, Rada Recombinase In Complex With Calcium
pdb|3FYH|A Chain A, Recombinase In Complex With Adp And Metatungstate
Length = 322
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 82/217 (37%), Gaps = 33/217 (15%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLA------------LHVIAEAQRQG 86
+ST S LD LG GGL V E G SGKT + L EA +G
Sbjct: 80 LSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKG 138
Query: 87 GY----CVFIDAEHALDP----SLAETIGVK----TENLLLAQPDCGEQALSL---VDTL 131
V+ID E P +AE G+ +N +A+ + + ++ L
Sbjct: 139 EVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDL 198
Query: 132 IRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFI 191
I+ G + E G +A + + + + + L+ L +++
Sbjct: 199 IQEGNNIKLVVIDSLTSTFRNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLVT 255
Query: 192 NQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228
NQV AK F G E GG+ + A+ R +++
Sbjct: 256 NQVSAKPD--AFFGMAEQAIGGHIVGHAATFRFFVRK 290
>pdb|1N0W|A Chain A, Crystal Structure Of A Rad51-Brca2 Brc Repeat Complex
Length = 243
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKT----TLALHVIAEAQRQG--GYCVFI 92
++TGS LD L GG+ G + E +G +GKT TLA+ R G G +I
Sbjct: 6 ITTGSKELDKLL-QGGIETGSITEXFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAXYI 64
Query: 93 DAEHALDP----SLAETIGVKTENLL 114
D E P ++AE G+ ++L
Sbjct: 65 DTEGTFRPERLLAVAERYGLSGSDVL 90
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLL 115
+G +V + GP SGKTT+ L +IA +R V+I + D P +G+ +N L
Sbjct: 40 EGEMVGLLGPSGSGKTTI-LRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYAL 98
Query: 116 AQPDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALR 175
Q +++ D + VPK E+D + + M RL S A R
Sbjct: 99 F------QHMTVYDNV---------SFGLREKRVPKDEMDARVRELLRFM--RLESYANR 141
Query: 176 KLSHSLSLSQ 185
H LS Q
Sbjct: 142 -FPHELSGGQ 150
>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|4FXP|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
Length = 200
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE---HALDPSLAETIGVKTENL 113
KG V+ + G SGK+TLA + ++G C +D + H L+ L+ + EN+
Sbjct: 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAENI 83
>pdb|4A1F|A Chain A, Crystal Structure Of C-Terminal Domain Of Helicobacter
Pylori Dnab Helicase
pdb|4A1F|B Chain B, Crystal Structure Of C-Terminal Domain Of Helicobacter
Pylori Dnab Helicase
Length = 338
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 8 LQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPE 67
L+ A+D IT + KGS+ G + TG LD T G KG +V I
Sbjct: 8 LESAMDLITENQRKGSLEVTG----------IPTGFVQLDNY--TSGFNKGSLVIIGARP 55
Query: 68 ASGKTTLALHVIAEA-QRQGGYCVF 91
+ GKT+L ++++ A G VF
Sbjct: 56 SMGKTSLMMNMVLSALNDDRGVAVF 80
>pdb|2F1H|A Chain A, Recombinase In Complex With Amp-pnp And Potassium
pdb|2F1I|A Chain A, Recombinase In Complex With Amp-pnp
pdb|2F1J|A Chain A, Recombinase In Complex With Adp
Length = 322
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 82/217 (37%), Gaps = 33/217 (15%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLA------------LHVIAEAQRQG 86
+ST S LD LG GGL V E G SGKT + L EA +G
Sbjct: 80 LSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKG 138
Query: 87 GY----CVFIDAEHALDP----SLAETIGVK----TENLLLAQPDCGEQALSL---VDTL 131
V+ID + P +AE G+ +N +A+ + + ++ L
Sbjct: 139 EVAQPKAVYIDTDGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDL 198
Query: 132 IRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFI 191
I+ G + E G +A + + + + + L+ L +++
Sbjct: 199 IQEGNNIKLVVIDSLTSTFRNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLVT 255
Query: 192 NQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228
NQV AK F G E GG+ + A+ R +++
Sbjct: 256 NQVSAKPD--AFFGMAEQAIGGHIVGHAATFRFFVRK 290
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95
GR V + GP +GKT LAL + E + +C + +E
Sbjct: 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSE 100
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95
GR V + GP +GKT LAL + E + +C + +E
Sbjct: 77 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSE 114
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLA 75
V GSF L++ G + KG V+ I GP GKTT
Sbjct: 350 VKDYGSFKLEVE--PGEIRKGEVIGIVGPNGIGKTTFV 385
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLA 75
V GSF L++ G + KG V+ I GP GKTT
Sbjct: 364 VKDYGSFKLEVE--PGEIRKGEVIGIVGPNGIGKTTFV 399
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 55 LPKGRVVEIYGPEASGKTTLALHVI-AEAQRQ 85
+P+G++V + G SGK++LA I AE QR+
Sbjct: 41 IPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRR 72
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTL 74
V GSF L++ G + KG V+ I GP GKTT
Sbjct: 294 VKDYGSFRLEVE--PGEIKKGEVIGIVGPNGIGKTTF 328
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 63 IYGPEASGKTTLALHVIAEAQRQG 86
I+GP +GKTT + +I +A +QG
Sbjct: 210 IHGPPGTGKTTTVVEIILQAVKQG 233
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 63 IYGPEASGKTTLALHVIAEAQRQG 86
I+GP +GKTT + +I +A +QG
Sbjct: 210 IHGPPGTGKTTTVVEIILQAVKQG 233
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 55 LPKGRVVEIYGPEASGKTTLALHVI-AEAQRQ 85
+P+G++V + G SGK++LA I AE QR+
Sbjct: 41 IPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRR 72
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 55 LPKGRVVEIYGPEASGKTTLALHVI-AEAQRQ 85
+P+G++V + G SGK++LA I AE QR+
Sbjct: 41 IPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRR 72
>pdb|2WZQ|A Chain A, Insertion Mutant E173gp174 Of The Ns3 Protease-Helicase
From Dengue Virus
Length = 619
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 42 GSFALDIALGTGGLP----KGRVVEIYGPEASGKTTLALHVIAEAQRQG 86
G+ LD GT G P KG+V+ +YG K+ + I +A+R G
Sbjct: 124 GAVTLDFKPGTSGSPIINKKGKVIGLYGNGVVTKSGDYVSAITQAERIG 172
>pdb|2WHX|A Chain A, A Second Conformation Of The Ns3 Protease-Helicase From
Dengue Virus
Length = 618
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 42 GSFALDIALGTGGLP----KGRVVEIYGPEASGKTTLALHVIAEAQRQG 86
G+ LD GT G P KG+V+ +YG K+ + I +A+R G
Sbjct: 124 GAVTLDFKPGTSGSPIINKKGKVIGLYGNGVVTKSGDYVSAITQAERIG 172
>pdb|2VBC|A Chain A, Crystal Structure Of The Ns3 Protease-Helicase From Dengue
Virus
Length = 618
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 42 GSFALDIALGTGGLP----KGRVVEIYGPEASGKTTLALHVIAEAQRQG 86
G+ LD GT G P KG+V+ +YG K+ + I +A+R G
Sbjct: 124 GAVTLDFKPGTSGSPIINKKGKVIGLYGNGVVTKSGDYVSAITQAERIG 172
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 507
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 92
+ TG A+D + G +G+ I G +GKT +A I Q Q CV++
Sbjct: 147 LQTGLIAIDAMIPVG---RGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYV 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,267,977
Number of Sequences: 62578
Number of extensions: 354149
Number of successful extensions: 1236
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1141
Number of HSP's gapped (non-prelim): 76
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)