Query 017792
Match_columns 366
No_of_seqs 368 out of 4000
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:28:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00154 RecA: recA bacterial 100.0 9.5E-66 2.1E-70 482.6 28.6 320 6-327 1-321 (322)
2 cd00983 recA RecA is a bacter 100.0 1.3E-64 2.7E-69 476.8 33.4 323 3-328 1-324 (325)
3 PRK09354 recA recombinase A; P 100.0 2.7E-64 6E-69 477.5 33.8 325 2-329 5-330 (349)
4 TIGR02012 tigrfam_recA protein 100.0 2.7E-63 5.9E-68 467.5 28.8 320 3-325 1-321 (321)
5 COG0468 RecA RecA/RadA recombi 100.0 7.9E-42 1.7E-46 315.3 24.2 271 2-282 5-278 (279)
6 PRK09519 recA DNA recombinatio 100.0 8.1E-41 1.8E-45 343.7 27.2 270 2-276 5-274 (790)
7 PLN03187 meiotic recombination 100.0 6.1E-32 1.3E-36 257.8 24.0 246 5-271 78-341 (344)
8 TIGR02238 recomb_DMC1 meiotic 100.0 5.2E-32 1.1E-36 256.5 22.5 244 6-270 49-311 (313)
9 PLN03186 DNA repair protein RA 100.0 6.5E-31 1.4E-35 251.0 21.0 222 34-271 100-339 (342)
10 PTZ00035 Rad51 protein; Provis 100.0 1.5E-30 3.3E-35 249.1 22.2 222 34-271 95-334 (337)
11 PF08423 Rad51: Rad51; InterP 100.0 3.7E-30 8E-35 238.0 17.5 221 35-271 16-254 (256)
12 TIGR02239 recomb_RAD51 DNA rep 100.0 2.1E-29 4.6E-34 239.3 22.2 222 34-271 73-313 (316)
13 COG1066 Sms Predicted ATP-depe 100.0 3E-29 6.5E-34 236.9 21.0 226 32-290 68-296 (456)
14 PRK09361 radB DNA repair and r 100.0 1.2E-28 2.6E-33 224.3 21.7 213 37-271 3-223 (225)
15 cd01393 recA_like RecA is a b 100.0 3E-28 6.5E-33 221.7 20.9 206 39-257 1-223 (226)
16 cd01394 radB RadB. The archaea 100.0 5.6E-28 1.2E-32 218.9 22.5 211 39-270 1-218 (218)
17 TIGR02236 recomb_radA DNA repa 100.0 5.9E-28 1.3E-32 230.1 22.4 219 34-270 72-309 (310)
18 PRK04301 radA DNA repair and r 100.0 2E-27 4.4E-32 227.0 22.3 219 34-270 79-315 (317)
19 cd01121 Sms Sms (bacterial rad 100.0 2.5E-27 5.5E-32 229.2 22.3 224 23-278 49-274 (372)
20 TIGR00416 sms DNA repair prote 100.0 3.6E-27 7.7E-32 234.1 23.4 225 24-280 62-288 (454)
21 cd01123 Rad51_DMC1_radA Rad51_ 100.0 3.4E-27 7.5E-32 215.9 21.0 216 39-270 1-235 (235)
22 PRK11823 DNA repair protein Ra 100.0 1.8E-26 4E-31 228.9 24.0 226 24-281 48-275 (446)
23 TIGR02237 recomb_radB DNA repa 99.9 1E-25 2.3E-30 202.6 21.3 200 46-269 1-208 (209)
24 TIGR03878 thermo_KaiC_2 KaiC d 99.9 3.9E-25 8.5E-30 205.2 20.1 216 38-274 3-256 (259)
25 TIGR03877 thermo_KaiC_1 KaiC d 99.9 1.2E-24 2.7E-29 199.5 21.3 202 37-270 1-230 (237)
26 KOG1434 Meiotic recombination 99.9 3.9E-26 8.4E-31 202.5 10.6 223 33-271 91-332 (335)
27 PRK04328 hypothetical protein; 99.9 1.6E-24 3.6E-29 200.0 20.4 204 36-271 2-233 (249)
28 TIGR03881 KaiC_arch_4 KaiC dom 99.9 8.7E-23 1.9E-27 186.2 21.1 202 38-270 1-226 (229)
29 PF06745 KaiC: KaiC; InterPro 99.9 1.5E-23 3.2E-28 191.0 15.6 201 39-270 1-221 (226)
30 TIGR02655 circ_KaiC circadian 99.9 2.6E-22 5.6E-27 201.9 20.2 206 37-271 1-228 (484)
31 TIGR02655 circ_KaiC circadian 99.9 4.3E-22 9.4E-27 200.3 20.6 208 35-271 241-461 (484)
32 KOG1564 DNA repair protein RHP 99.9 5.5E-22 1.2E-26 178.6 18.6 228 34-270 79-349 (351)
33 PRK06067 flagellar accessory p 99.9 7.5E-22 1.6E-26 180.7 17.7 206 35-272 3-227 (234)
34 TIGR03880 KaiC_arch_3 KaiC dom 99.9 3.8E-21 8.3E-26 174.9 20.0 203 42-271 1-217 (224)
35 TIGR03600 phage_DnaB phage rep 99.9 7.6E-21 1.7E-25 188.6 23.7 209 35-256 173-415 (421)
36 PRK09302 circadian clock prote 99.9 4.1E-21 9E-26 194.8 20.8 209 34-271 8-238 (509)
37 PHA02542 41 41 helicase; Provi 99.9 1.9E-20 4.1E-25 186.6 23.3 242 7-272 150-425 (473)
38 PRK09302 circadian clock prote 99.9 8.7E-21 1.9E-25 192.5 21.3 208 35-271 251-471 (509)
39 PRK05748 replicative DNA helic 99.9 1.8E-20 4E-25 187.1 23.2 224 35-272 182-439 (448)
40 PRK08760 replicative DNA helic 99.9 2E-20 4.4E-25 187.1 23.2 223 35-272 208-464 (476)
41 TIGR00665 DnaB replicative DNA 99.9 1.8E-20 4E-25 186.6 22.9 220 35-269 174-426 (434)
42 PF03796 DnaB_C: DnaB-like hel 99.9 8.8E-21 1.9E-25 176.3 18.8 221 38-273 1-255 (259)
43 PRK05595 replicative DNA helic 99.9 3.1E-20 6.8E-25 185.1 23.6 223 35-272 180-435 (444)
44 cd01122 GP4d_helicase GP4d_hel 99.9 1.5E-20 3.1E-25 175.8 19.7 207 34-253 8-250 (271)
45 PRK09165 replicative DNA helic 99.9 3.6E-20 7.8E-25 186.4 23.6 227 35-273 196-485 (497)
46 PRK05636 replicative DNA helic 99.9 6.2E-20 1.3E-24 184.2 23.6 222 35-271 244-498 (505)
47 PRK08006 replicative DNA helic 99.9 1.2E-19 2.6E-24 181.1 24.3 223 35-272 203-460 (471)
48 PRK07004 replicative DNA helic 99.9 8.3E-20 1.8E-24 182.1 22.1 225 34-273 191-449 (460)
49 cd00984 DnaB_C DnaB helicase C 99.8 6.7E-20 1.4E-24 168.4 19.7 206 45-265 2-240 (242)
50 PRK08506 replicative DNA helic 99.8 2.8E-19 6.1E-24 179.0 23.0 224 35-272 171-448 (472)
51 PRK08840 replicative DNA helic 99.8 5.8E-19 1.3E-23 175.9 24.4 223 35-272 196-453 (464)
52 PRK06904 replicative DNA helic 99.8 5.6E-19 1.2E-23 176.4 24.3 225 34-273 199-460 (472)
53 PRK06321 replicative DNA helic 99.8 3.6E-19 7.9E-24 177.5 21.6 226 34-272 204-462 (472)
54 PRK06749 replicative DNA helic 99.8 1.7E-18 3.7E-23 171.1 23.8 222 34-269 164-421 (428)
55 PRK08533 flagellar accessory p 99.8 6.9E-19 1.5E-23 160.5 19.2 204 36-270 3-223 (230)
56 COG0305 DnaB Replicative DNA h 99.8 7.6E-18 1.6E-22 163.9 22.1 241 5-272 157-430 (435)
57 COG0467 RAD55 RecA-superfamily 99.8 8E-18 1.7E-22 156.5 20.2 208 36-272 2-233 (260)
58 COG1126 GlnQ ABC-type polar am 99.7 5.7E-18 1.2E-22 148.4 9.6 160 55-236 25-219 (240)
59 PRK05973 replicative DNA helic 99.7 4.3E-17 9.3E-22 148.1 13.8 167 7-200 24-198 (237)
60 COG1136 SalX ABC-type antimicr 99.7 3E-17 6.5E-22 147.1 9.9 153 55-230 28-219 (226)
61 COG1125 OpuBA ABC-type proline 99.7 2.4E-17 5.3E-22 147.5 8.8 161 54-236 23-219 (309)
62 COG1120 FepC ABC-type cobalami 99.7 2.9E-17 6.2E-22 150.0 7.3 162 54-237 24-223 (258)
63 COG2874 FlaH Predicted ATPases 99.7 5.9E-16 1.3E-20 135.4 14.7 201 38-270 9-228 (235)
64 KOG1433 DNA repair protein RAD 99.7 2.8E-17 6E-22 154.6 5.5 220 35-270 89-320 (326)
65 COG3842 PotA ABC-type spermidi 99.7 1.1E-16 2.3E-21 152.5 7.9 161 54-236 27-220 (352)
66 COG1135 AbcC ABC-type metal io 99.7 1.5E-16 3.2E-21 146.3 7.8 170 42-236 18-225 (339)
67 COG4555 NatA ABC-type Na+ tran 99.7 2.9E-16 6.4E-21 136.1 8.3 160 55-236 25-216 (245)
68 COG1131 CcmA ABC-type multidru 99.7 1.9E-16 4.1E-21 149.5 7.7 162 54-236 27-220 (293)
69 COG1121 ZnuC ABC-type Mn/Zn tr 99.6 2.4E-16 5.2E-21 143.4 7.6 154 54-229 26-215 (254)
70 COG1127 Ttg2A ABC-type transpo 99.6 5.5E-16 1.2E-20 138.0 9.0 160 54-236 30-229 (263)
71 COG1118 CysA ABC-type sulfate/ 99.6 3.1E-16 6.6E-21 144.0 7.3 160 55-236 25-221 (345)
72 cd01124 KaiC KaiC is a circadi 99.6 1.3E-14 2.7E-19 127.8 17.3 167 60-255 1-185 (187)
73 COG2884 FtsE Predicted ATPase 99.6 2.3E-15 5E-20 129.4 9.2 154 38-197 10-199 (223)
74 COG3839 MalK ABC-type sugar tr 99.6 1.4E-15 3.1E-20 144.1 8.2 160 55-236 26-217 (338)
75 COG1116 TauB ABC-type nitrate/ 99.6 6.8E-16 1.5E-20 138.8 4.7 150 55-228 26-206 (248)
76 PRK13537 nodulation ABC transp 99.6 2.7E-15 5.9E-20 142.7 8.6 161 54-236 29-221 (306)
77 PRK07773 replicative DNA helic 99.6 4.5E-14 9.8E-19 151.6 18.2 155 35-200 196-382 (886)
78 PF13481 AAA_25: AAA domain; P 99.6 6.4E-15 1.4E-19 130.5 8.5 152 34-197 9-191 (193)
79 COG1122 CbiO ABC-type cobalt t 99.6 8.9E-15 1.9E-19 133.2 9.2 161 54-236 26-222 (235)
80 PRK13536 nodulation factor exp 99.6 6.1E-15 1.3E-19 142.0 8.1 160 55-236 64-255 (340)
81 TIGR01188 drrA daunorubicin re 99.6 8.3E-15 1.8E-19 139.2 8.8 161 54-236 15-207 (302)
82 TIGR02314 ABC_MetN D-methionin 99.6 8.9E-15 1.9E-19 140.8 8.8 160 55-236 28-224 (343)
83 COG0410 LivF ABC-type branched 99.6 1.3E-14 2.9E-19 128.7 9.1 161 55-236 26-220 (237)
84 COG3638 ABC-type phosphate/pho 99.5 9.3E-15 2E-19 129.9 7.1 174 40-236 14-231 (258)
85 PRK11650 ugpC glycerol-3-phosp 99.5 8.3E-15 1.8E-19 142.0 7.2 159 55-235 27-217 (356)
86 COG1124 DppF ABC-type dipeptid 99.5 7.9E-15 1.7E-19 131.0 5.7 154 55-234 30-223 (252)
87 COG3840 ThiQ ABC-type thiamine 99.5 1.3E-14 2.8E-19 124.0 6.5 160 54-235 21-212 (231)
88 cd03261 ABC_Org_Solvent_Resist 99.5 2.5E-14 5.5E-19 130.9 8.7 159 55-235 23-219 (235)
89 PRK09536 btuD corrinoid ABC tr 99.5 1.9E-14 4.2E-19 141.1 8.4 160 55-236 26-222 (402)
90 COG4559 ABC-type hemin transpo 99.5 3.8E-14 8.1E-19 124.0 9.1 162 55-237 24-225 (259)
91 TIGR03265 PhnT2 putative 2-ami 99.5 1.7E-14 3.8E-19 139.6 7.6 160 55-236 27-218 (353)
92 TIGR01186 proV glycine betaine 99.5 2.4E-14 5.1E-19 138.7 8.5 159 55-235 16-212 (363)
93 TIGR00960 3a0501s02 Type II (G 99.5 2E-14 4.4E-19 129.9 7.5 153 55-229 26-214 (216)
94 TIGR01288 nodI ATP-binding ABC 99.5 2.6E-14 5.7E-19 135.8 8.6 160 55-236 27-218 (303)
95 cd01120 RecA-like_NTPases RecA 99.5 3.6E-13 7.7E-18 115.0 14.8 157 60-228 1-165 (165)
96 cd03213 ABCG_EPDR ABCG transpo 99.5 7.8E-14 1.7E-18 124.1 10.5 141 55-231 32-190 (194)
97 PRK11432 fbpC ferric transport 99.5 2.6E-14 5.7E-19 138.1 8.0 160 55-236 29-220 (351)
98 PRK09452 potA putrescine/sperm 99.5 2.4E-14 5.2E-19 139.5 7.4 159 55-235 37-227 (375)
99 TIGR03258 PhnT 2-aminoethylpho 99.5 2.7E-14 5.9E-19 138.5 7.7 160 55-236 28-222 (362)
100 PRK11607 potG putrescine trans 99.5 3.5E-14 7.5E-19 138.5 8.2 160 55-236 42-233 (377)
101 COG1117 PstB ABC-type phosphat 99.5 3.7E-14 8E-19 124.2 7.1 142 53-197 28-210 (253)
102 cd03266 ABC_NatA_sodium_export 99.5 3.9E-14 8.4E-19 128.1 7.5 155 55-231 28-214 (218)
103 cd03226 ABC_cobalt_CbiO_domain 99.5 3.4E-14 7.3E-19 127.4 6.9 154 55-230 23-203 (205)
104 cd03256 ABC_PhnC_transporter A 99.5 9.5E-14 2.1E-18 127.5 9.9 158 55-234 24-226 (241)
105 cd03219 ABC_Mj1267_LivG_branch 99.5 5.6E-14 1.2E-18 128.6 8.3 158 55-234 23-224 (236)
106 cd03230 ABC_DR_subfamily_A Thi 99.5 7.3E-14 1.6E-18 121.9 8.5 137 55-229 23-171 (173)
107 cd03268 ABC_BcrA_bacitracin_re 99.5 5.5E-14 1.2E-18 126.2 7.9 155 55-231 23-204 (208)
108 cd03259 ABC_Carb_Solutes_like 99.5 3.7E-14 8.1E-19 127.8 6.7 155 55-231 23-209 (213)
109 PRK10851 sulfate/thiosulfate t 99.5 3.7E-14 8.1E-19 137.3 7.0 160 55-236 25-220 (353)
110 PRK11153 metN DL-methionine tr 99.5 5.9E-14 1.3E-18 135.6 8.4 159 55-235 28-223 (343)
111 cd03265 ABC_DrrA DrrA is the A 99.5 8.7E-14 1.9E-18 126.1 9.0 158 55-234 23-213 (220)
112 TIGR03522 GldA_ABC_ATP gliding 99.5 4.9E-14 1.1E-18 133.9 7.6 159 55-236 25-215 (301)
113 cd03269 ABC_putative_ATPase Th 99.5 4.7E-14 1E-18 126.9 7.1 154 55-231 23-206 (210)
114 cd03229 ABC_Class3 This class 99.5 6.1E-14 1.3E-18 123.0 7.4 138 55-229 23-177 (178)
115 cd03258 ABC_MetN_methionine_tr 99.5 7.9E-14 1.7E-18 127.5 8.3 158 55-234 28-222 (233)
116 TIGR02315 ABC_phnC phosphonate 99.5 1.5E-13 3.3E-18 126.4 10.2 157 55-233 25-226 (243)
117 cd03218 ABC_YhbG The ABC trans 99.5 8.5E-14 1.9E-18 127.1 8.1 156 55-232 23-212 (232)
118 PRK09493 glnQ glutamine ABC tr 99.5 8.8E-14 1.9E-18 127.8 8.2 158 55-234 24-217 (240)
119 COG4152 ABC-type uncharacteriz 99.5 2.4E-14 5.1E-19 127.7 4.2 144 55-236 25-213 (300)
120 cd03246 ABCC_Protease_Secretio 99.5 1.7E-13 3.8E-18 119.5 9.6 135 55-229 25-171 (173)
121 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.5 6E-14 1.3E-18 126.9 6.8 153 54-229 26-216 (218)
122 PRK11144 modC molybdate transp 99.5 6.6E-14 1.4E-18 135.7 7.5 159 55-235 21-211 (352)
123 PRK11264 putative amino-acid A 99.5 1.6E-13 3.5E-18 126.7 9.8 157 55-233 26-224 (250)
124 cd03234 ABCG_White The White s 99.5 2E-13 4.4E-18 124.2 10.2 158 54-232 29-223 (226)
125 PRK11000 maltose/maltodextrin 99.5 7.8E-14 1.7E-18 135.9 7.9 159 55-235 26-216 (369)
126 cd03292 ABC_FtsE_transporter F 99.5 9.6E-14 2.1E-18 125.1 7.7 153 55-229 24-212 (214)
127 PRK10619 histidine/lysine/argi 99.5 2.3E-13 4.9E-18 126.4 10.4 160 54-234 27-233 (257)
128 cd03232 ABC_PDR_domain2 The pl 99.5 2.5E-13 5.3E-18 120.6 10.2 141 55-231 30-188 (192)
129 TIGR02673 FtsE cell division A 99.5 8.2E-14 1.8E-18 125.6 7.1 154 54-229 24-213 (214)
130 COG4604 CeuD ABC-type enteroch 99.5 2.2E-13 4.8E-18 117.9 9.3 162 54-237 23-220 (252)
131 cd03262 ABC_HisP_GlnQ_permease 99.5 1.7E-13 3.7E-18 123.4 9.1 153 55-229 23-211 (213)
132 cd03298 ABC_ThiQ_thiamine_tran 99.5 1.5E-13 3.2E-18 123.8 8.6 155 55-231 21-207 (211)
133 cd03215 ABC_Carb_Monos_II This 99.5 1.9E-13 4.1E-18 120.3 9.0 140 54-229 22-180 (182)
134 cd03296 ABC_CysA_sulfate_impor 99.5 6.6E-14 1.4E-18 128.5 6.3 158 55-234 25-218 (239)
135 TIGR02142 modC_ABC molybdenum 99.5 8.7E-14 1.9E-18 135.0 7.4 159 55-235 20-214 (354)
136 PRK13651 cobalt transporter AT 99.5 1.1E-13 2.4E-18 131.5 7.9 158 55-235 30-247 (305)
137 PRK10895 lipopolysaccharide AB 99.5 2.3E-13 5E-18 125.1 9.8 158 55-234 26-218 (241)
138 TIGR01277 thiQ thiamine ABC tr 99.5 1E-13 2.2E-18 125.0 7.2 157 55-233 21-209 (213)
139 PRK11831 putative ABC transpor 99.5 2E-13 4.2E-18 127.7 9.2 158 55-234 30-225 (269)
140 cd03224 ABC_TM1139_LivF_branch 99.5 9.8E-14 2.1E-18 125.8 6.9 159 54-233 22-212 (222)
141 PRK13647 cbiO cobalt transport 99.5 1.3E-13 2.8E-18 129.3 7.8 159 55-235 28-220 (274)
142 cd03260 ABC_PstB_phosphate_tra 99.5 1.4E-13 3.1E-18 125.3 7.9 157 55-234 23-221 (227)
143 PRK10070 glycine betaine trans 99.4 1.8E-13 3.9E-18 134.2 8.7 159 55-235 51-247 (400)
144 cd03301 ABC_MalK_N The N-termi 99.4 1.1E-13 2.5E-18 124.6 6.8 155 55-231 23-209 (213)
145 cd03263 ABC_subfamily_A The AB 99.4 2.1E-13 4.5E-18 123.5 8.5 157 55-234 25-213 (220)
146 COG3845 ABC-type uncharacteriz 99.4 2.8E-13 6E-18 131.7 9.8 80 42-124 16-99 (501)
147 PRK13641 cbiO cobalt transport 99.4 1.4E-13 3.1E-18 129.8 7.6 158 55-235 30-227 (287)
148 PRK13643 cbiO cobalt transport 99.4 1.7E-13 3.7E-18 129.3 8.0 159 54-235 28-226 (288)
149 COG4175 ProV ABC-type proline/ 99.4 2E-13 4.3E-18 126.0 8.1 157 55-236 51-248 (386)
150 cd03225 ABC_cobalt_CbiO_domain 99.4 1.9E-13 4.1E-18 123.0 7.9 153 55-229 24-210 (211)
151 cd03257 ABC_NikE_OppD_transpor 99.4 2.6E-13 5.6E-18 123.5 8.7 156 54-231 27-224 (228)
152 cd03293 ABC_NrtD_SsuB_transpor 99.4 1.3E-13 2.8E-18 125.0 6.5 153 55-231 27-212 (220)
153 PRK13637 cbiO cobalt transport 99.4 4.3E-13 9.2E-18 126.6 10.0 160 54-235 29-227 (287)
154 PRK11614 livF leucine/isoleuci 99.4 1.7E-13 3.6E-18 125.7 7.0 160 54-235 27-219 (237)
155 PRK13548 hmuV hemin importer A 99.4 2.7E-13 5.9E-18 125.9 8.5 158 55-234 25-222 (258)
156 cd03295 ABC_OpuCA_Osmoprotecti 99.4 4.6E-13 1E-17 123.1 9.9 157 55-233 24-216 (242)
157 PRK11247 ssuB aliphatic sulfon 99.4 2E-13 4.3E-18 126.7 7.4 150 55-233 35-214 (257)
158 cd03264 ABC_drug_resistance_li 99.4 4.1E-13 8.9E-18 120.8 9.0 153 55-231 23-207 (211)
159 PRK10771 thiQ thiamine transpo 99.4 2.5E-13 5.4E-18 124.2 7.5 158 55-234 22-211 (232)
160 PRK13650 cbiO cobalt transport 99.4 3E-13 6.4E-18 127.1 8.1 158 55-235 30-222 (279)
161 PRK10575 iron-hydroxamate tran 99.4 2.7E-13 5.8E-18 126.5 7.7 158 55-234 34-229 (265)
162 PRK10908 cell division protein 99.4 4.8E-13 1.1E-17 121.4 9.2 155 55-231 25-215 (222)
163 TIGR03411 urea_trans_UrtD urea 99.4 4.3E-13 9.3E-18 123.3 8.9 157 55-234 25-223 (242)
164 COG4148 ModC ABC-type molybdat 99.4 4.7E-14 1E-18 128.0 2.4 170 42-235 11-211 (352)
165 PRK15079 oligopeptide ABC tran 99.4 2.6E-13 5.6E-18 130.4 7.7 159 55-235 44-244 (331)
166 TIGR03873 F420-0_ABC_ATP propo 99.4 4.1E-13 8.8E-18 124.6 8.7 158 55-234 24-218 (256)
167 TIGR03740 galliderm_ABC gallid 99.4 2.2E-13 4.7E-18 123.7 6.7 156 55-233 23-204 (223)
168 PRK11308 dppF dipeptide transp 99.4 6.8E-13 1.5E-17 127.3 10.4 155 55-236 38-238 (327)
169 TIGR03410 urea_trans_UrtE urea 99.4 2.5E-13 5.4E-18 123.9 7.0 159 55-234 23-213 (230)
170 COG1137 YhbG ABC-type (unclass 99.4 4.5E-14 9.8E-19 122.4 2.0 162 55-237 27-223 (243)
171 PRK10253 iron-enterobactin tra 99.4 3.7E-13 8.1E-18 125.5 8.2 159 55-235 30-226 (265)
172 PRK13634 cbiO cobalt transport 99.4 2.9E-13 6.4E-18 127.8 7.6 159 54-235 29-228 (290)
173 PRK11231 fecE iron-dicitrate t 99.4 2.9E-13 6.4E-18 125.4 7.4 157 55-233 25-218 (255)
174 cd03297 ABC_ModC_molybdenum_tr 99.4 3E-13 6.5E-18 122.0 7.2 154 55-231 21-210 (214)
175 cd03294 ABC_Pro_Gly_Bertaine T 99.4 4.9E-13 1.1E-17 125.0 8.8 156 55-232 47-240 (269)
176 PRK11124 artP arginine transpo 99.4 5.8E-13 1.3E-17 122.5 9.2 158 55-234 25-222 (242)
177 TIGR01184 ntrCD nitrate transp 99.4 3.9E-13 8.4E-18 122.8 8.0 156 55-234 8-196 (230)
178 TIGR01978 sufC FeS assembly AT 99.4 4.8E-13 1E-17 122.9 8.6 160 55-235 23-227 (243)
179 PRK13631 cbiO cobalt transport 99.4 3.9E-13 8.5E-18 128.6 8.2 158 54-235 48-258 (320)
180 PRK14247 phosphate ABC transpo 99.4 1.1E-12 2.3E-17 121.3 10.9 158 55-234 26-226 (250)
181 PRK14267 phosphate ABC transpo 99.4 9.3E-13 2E-17 121.9 10.5 158 55-234 27-229 (253)
182 TIGR03005 ectoine_ehuA ectoine 99.4 6.2E-13 1.4E-17 123.0 9.3 158 55-234 23-228 (252)
183 COG1123 ATPase components of v 99.4 9.1E-13 2E-17 131.2 10.9 161 55-236 314-513 (539)
184 TIGR03415 ABC_choXWV_ATP choli 99.4 3.7E-13 8.1E-18 131.1 8.0 160 55-236 47-248 (382)
185 cd03247 ABCC_cytochrome_bd The 99.4 7.1E-13 1.5E-17 116.2 9.0 137 54-231 24-174 (178)
186 cd03216 ABC_Carb_Monos_I This 99.4 2E-12 4.3E-17 111.8 11.7 131 55-230 23-159 (163)
187 cd03235 ABC_Metallic_Cations A 99.4 3.5E-13 7.5E-18 121.5 7.2 150 55-228 22-207 (213)
188 TIGR03864 PQQ_ABC_ATP ABC tran 99.4 5.3E-13 1.1E-17 122.3 8.4 156 55-233 24-212 (236)
189 PRK13649 cbiO cobalt transport 99.4 5E-13 1.1E-17 125.6 8.4 157 54-233 29-225 (280)
190 cd01125 repA Hexameric Replica 99.4 8E-12 1.7E-16 114.7 16.1 194 58-264 1-232 (239)
191 PRK14250 phosphate ABC transpo 99.4 8.3E-13 1.8E-17 121.4 9.6 155 55-232 26-211 (241)
192 PRK11300 livG leucine/isoleuci 99.4 8.2E-13 1.8E-17 122.4 9.5 157 55-233 28-234 (255)
193 PRK13644 cbiO cobalt transport 99.4 4.6E-13 9.9E-18 125.5 7.8 158 55-235 25-217 (274)
194 COG1129 MglA ABC-type sugar tr 99.4 7.3E-13 1.6E-17 131.0 9.4 164 42-234 20-226 (500)
195 cd03228 ABCC_MRP_Like The MRP 99.4 7.9E-13 1.7E-17 115.2 8.6 134 55-229 25-170 (171)
196 PRK09984 phosphonate/organopho 99.4 1.1E-12 2.3E-17 122.2 10.0 158 55-234 27-234 (262)
197 PRK13646 cbiO cobalt transport 99.4 1.2E-12 2.6E-17 123.5 10.4 159 54-235 29-228 (286)
198 PRK13652 cbiO cobalt transport 99.4 1.2E-12 2.5E-17 123.0 10.2 159 55-235 27-220 (277)
199 TIGR02211 LolD_lipo_ex lipopro 99.4 1E-12 2.2E-17 119.0 9.6 154 54-230 27-218 (221)
200 cd03300 ABC_PotA_N PotA is an 99.4 5.1E-13 1.1E-17 122.1 7.5 158 55-234 23-212 (232)
201 cd03267 ABC_NatA_like Similar 99.4 6E-13 1.3E-17 122.0 7.9 155 55-231 44-232 (236)
202 PRK13543 cytochrome c biogenes 99.4 1.7E-12 3.8E-17 117.1 10.7 152 54-227 33-211 (214)
203 PRK11248 tauB taurine transpor 99.4 8.4E-13 1.8E-17 122.4 8.6 150 55-228 24-204 (255)
204 PRK13635 cbiO cobalt transport 99.4 1.2E-12 2.7E-17 122.9 9.7 158 55-235 30-222 (279)
205 PRK14268 phosphate ABC transpo 99.4 1.6E-12 3.5E-17 120.8 10.4 158 54-234 34-234 (258)
206 TIGR00972 3a0107s01c2 phosphat 99.4 6.9E-13 1.5E-17 122.4 7.8 156 55-234 24-224 (247)
207 TIGR02769 nickel_nikE nickel i 99.4 1.1E-12 2.3E-17 122.4 9.1 159 55-235 34-233 (265)
208 cd03233 ABC_PDR_domain1 The pl 99.4 1.7E-12 3.6E-17 116.3 9.9 142 55-231 30-198 (202)
209 TIGR02770 nickel_nikD nickel i 99.4 9.2E-13 2E-17 120.2 8.3 158 55-234 9-207 (230)
210 PRK14242 phosphate transporter 99.4 2.1E-12 4.6E-17 119.5 10.8 156 55-233 29-228 (253)
211 cd03217 ABC_FeS_Assembly ABC-t 99.4 1.3E-12 2.8E-17 116.8 9.0 142 55-234 23-186 (200)
212 PRK13648 cbiO cobalt transport 99.4 1.3E-12 2.9E-17 122.1 9.3 153 55-235 32-224 (269)
213 PRK13639 cbiO cobalt transport 99.4 7.2E-13 1.6E-17 124.3 7.5 160 54-235 24-219 (275)
214 COG0411 LivG ABC-type branched 99.4 2.9E-13 6.3E-18 121.1 4.6 162 54-237 26-234 (250)
215 PRK13638 cbiO cobalt transport 99.4 8.3E-13 1.8E-17 123.6 7.8 159 55-235 24-218 (271)
216 PRK14235 phosphate transporter 99.4 2.5E-12 5.5E-17 120.1 11.0 157 55-234 42-243 (267)
217 PRK13640 cbiO cobalt transport 99.4 1.3E-12 2.7E-17 123.1 8.8 159 54-235 29-225 (282)
218 COG0444 DppD ABC-type dipeptid 99.4 2.5E-12 5.4E-17 119.8 10.6 161 54-236 27-237 (316)
219 PRK15439 autoinducer 2 ABC tra 99.4 1.7E-12 3.6E-17 132.1 10.3 153 54-233 33-220 (510)
220 PRK11629 lolD lipoprotein tran 99.4 2.3E-12 4.9E-17 117.9 10.1 139 55-197 32-208 (233)
221 TIGR03771 anch_rpt_ABC anchore 99.4 2.7E-12 5.8E-17 116.7 10.4 149 55-233 3-192 (223)
222 PRK10584 putative ABC transpor 99.4 1.9E-12 4.1E-17 117.9 9.2 153 55-230 33-223 (228)
223 cd03252 ABCC_Hemolysin The ABC 99.4 2.1E-12 4.6E-17 118.3 9.3 156 55-235 25-218 (237)
224 PRK10762 D-ribose transporter 99.4 1.6E-12 3.5E-17 131.9 9.3 157 55-233 27-221 (501)
225 PRK13636 cbiO cobalt transport 99.4 1.8E-12 4E-17 122.0 9.0 159 55-235 29-224 (283)
226 PRK13633 cobalt transporter AT 99.4 1.6E-12 3.4E-17 122.3 8.5 159 54-235 32-226 (280)
227 COG1123 ATPase components of v 99.4 2E-12 4.4E-17 128.7 9.6 154 55-235 32-237 (539)
228 PRK14274 phosphate ABC transpo 99.4 4.1E-12 9E-17 118.0 11.1 158 55-235 35-236 (259)
229 cd03251 ABCC_MsbA MsbA is an e 99.4 2.9E-12 6.3E-17 117.1 9.9 155 55-234 25-217 (234)
230 PRK10247 putative ABC transpor 99.4 4.2E-12 9E-17 115.6 10.8 149 55-227 30-211 (225)
231 PRK15112 antimicrobial peptide 99.4 2.1E-12 4.5E-17 120.6 8.9 157 54-232 35-229 (267)
232 COG4181 Predicted ABC-type tra 99.4 3E-12 6.6E-17 108.6 8.8 149 55-231 33-224 (228)
233 PRK13632 cbiO cobalt transport 99.4 2.3E-12 5E-17 120.6 9.1 157 54-233 31-222 (271)
234 PRK14256 phosphate ABC transpo 99.4 3.7E-12 7.9E-17 117.9 10.3 157 55-233 27-227 (252)
235 PRK03695 vitamin B12-transport 99.4 2.8E-12 6E-17 118.5 9.3 152 55-234 19-214 (248)
236 cd03237 ABC_RNaseL_inhibitor_d 99.4 1.3E-12 2.8E-17 120.5 7.0 145 53-228 20-191 (246)
237 PRK13642 cbiO cobalt transport 99.4 1.6E-12 3.5E-17 122.0 7.9 157 55-234 30-221 (277)
238 PRK09473 oppD oligopeptide tra 99.3 2.6E-12 5.6E-17 123.5 9.2 160 55-236 39-245 (330)
239 PRK10744 pstB phosphate transp 99.3 3.3E-12 7.1E-17 118.8 9.6 158 54-234 35-236 (260)
240 cd03223 ABCD_peroxisomal_ALDP 99.3 3.8E-12 8.2E-17 110.4 9.4 124 55-229 24-163 (166)
241 cd03299 ABC_ModC_like Archeal 99.3 2.6E-12 5.7E-17 117.7 8.8 158 55-234 22-211 (235)
242 PRK14269 phosphate ABC transpo 99.3 4.6E-12 9.9E-17 116.8 10.4 157 55-234 25-222 (246)
243 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.3 3.1E-12 6.6E-17 117.3 9.1 155 55-234 26-218 (238)
244 PRK10982 galactose/methyl gala 99.3 2.9E-12 6.3E-17 129.8 9.8 157 55-233 21-214 (491)
245 PRK13645 cbiO cobalt transport 99.3 1.3E-12 2.9E-17 123.3 6.8 158 54-233 33-231 (289)
246 PRK10419 nikE nickel transport 99.3 4.7E-12 1E-16 118.3 10.4 153 55-234 35-233 (268)
247 PRK09700 D-allose transporter 99.3 2.9E-12 6.2E-17 130.4 9.7 156 55-232 28-224 (510)
248 cd03245 ABCC_bacteriocin_expor 99.3 1.4E-12 3.1E-17 118.1 6.6 148 55-231 27-216 (220)
249 PRK09700 D-allose transporter 99.3 3.3E-12 7.1E-17 130.0 9.9 156 55-232 286-488 (510)
250 PRK10261 glutathione transport 99.3 2.5E-12 5.4E-17 133.7 8.9 160 54-235 346-546 (623)
251 PRK13547 hmuV hemin importer A 99.3 4.5E-12 9.8E-17 118.6 9.8 158 55-234 24-236 (272)
252 PRK11022 dppD dipeptide transp 99.3 4.4E-12 9.6E-17 121.7 9.9 160 55-236 30-237 (326)
253 PRK09519 recA DNA recombinatio 99.3 2.3E-12 4.9E-17 134.0 8.5 84 246-329 686-770 (790)
254 PRK13538 cytochrome c biogenes 99.3 3E-12 6.4E-17 114.8 8.1 140 55-198 24-192 (204)
255 TIGR03608 L_ocin_972_ABC putat 99.3 1.9E-12 4.1E-17 116.0 6.8 138 55-196 21-195 (206)
256 cd03369 ABCC_NFT1 Domain 2 of 99.3 1E-11 2.2E-16 111.4 11.5 148 55-231 31-201 (207)
257 PRK14249 phosphate ABC transpo 99.3 3.8E-12 8.2E-17 117.7 8.9 157 55-234 27-227 (251)
258 PRK14245 phosphate ABC transpo 99.3 8.3E-12 1.8E-16 115.4 11.2 158 55-235 26-227 (250)
259 PRK14263 phosphate ABC transpo 99.3 6.8E-12 1.5E-16 116.8 10.5 146 55-227 31-222 (261)
260 PRK14248 phosphate ABC transpo 99.3 6.9E-12 1.5E-16 117.1 10.5 158 55-235 44-245 (268)
261 PRK14273 phosphate ABC transpo 99.3 4.2E-12 9E-17 117.6 8.9 158 55-235 30-231 (254)
262 PRK14240 phosphate transporter 99.3 4.4E-12 9.5E-17 117.2 9.0 157 55-234 26-226 (250)
263 TIGR01189 ccmA heme ABC export 99.3 4.7E-12 1E-16 112.9 8.8 138 55-196 23-188 (198)
264 PRK14241 phosphate transporter 99.3 7.4E-12 1.6E-16 116.3 10.4 151 55-227 27-221 (258)
265 cd03253 ABCC_ATM1_transporter 99.3 4.6E-12 1E-16 116.0 8.8 155 54-233 23-215 (236)
266 TIGR00968 3a0106s01 sulfate AB 99.3 4.1E-12 8.9E-17 116.5 8.5 159 55-234 23-212 (237)
267 TIGR02982 heterocyst_DevA ABC 99.3 2.1E-12 4.6E-17 117.0 6.4 153 55-230 28-218 (220)
268 PRK13549 xylose transporter AT 99.3 3.8E-12 8.3E-17 129.4 9.0 139 55-197 28-205 (506)
269 PRK09580 sufC cysteine desulfu 99.3 8.8E-12 1.9E-16 115.0 10.6 160 54-234 23-227 (248)
270 PRK11288 araG L-arabinose tran 99.3 4.9E-12 1.1E-16 128.4 9.7 157 54-232 26-219 (501)
271 TIGR03796 NHPM_micro_ABC1 NHPM 99.3 4E-12 8.6E-17 134.4 9.3 153 55-236 502-694 (710)
272 cd03214 ABC_Iron-Siderophores_ 99.3 3E-12 6.6E-17 112.4 7.1 140 55-231 22-176 (180)
273 cd03231 ABC_CcmA_heme_exporter 99.3 4.1E-12 8.9E-17 113.6 8.1 134 55-197 23-187 (201)
274 PRK11288 araG L-arabinose tran 99.3 2.6E-12 5.7E-17 130.4 7.7 157 55-234 276-477 (501)
275 PRK14270 phosphate ABC transpo 99.3 8.5E-12 1.8E-16 115.4 10.4 157 55-234 27-227 (251)
276 PRK13540 cytochrome c biogenes 99.3 1.2E-11 2.6E-16 110.4 11.1 135 55-198 24-190 (200)
277 PRK14244 phosphate ABC transpo 99.3 8.8E-12 1.9E-16 115.3 10.5 157 55-234 28-229 (251)
278 PRK14251 phosphate ABC transpo 99.3 8.5E-12 1.8E-16 115.3 10.3 157 55-234 27-227 (251)
279 PRK14271 phosphate ABC transpo 99.3 7.9E-12 1.7E-16 117.3 10.2 157 55-234 44-243 (276)
280 TIGR02633 xylG D-xylose ABC tr 99.3 2.4E-12 5.1E-17 130.7 7.1 157 54-231 23-219 (500)
281 cd03254 ABCC_Glucan_exporter_l 99.3 1.9E-12 4.1E-17 117.9 5.7 154 55-233 26-217 (229)
282 PRK14265 phosphate ABC transpo 99.3 9.3E-12 2E-16 116.7 10.5 150 55-227 43-234 (274)
283 TIGR03269 met_CoM_red_A2 methy 99.3 6.9E-12 1.5E-16 127.9 10.4 158 55-234 307-509 (520)
284 PRK13549 xylose transporter AT 99.3 3.9E-12 8.3E-17 129.4 8.5 157 54-232 284-484 (506)
285 PRK14238 phosphate transporter 99.3 6.2E-12 1.3E-16 117.7 9.2 157 55-234 47-247 (271)
286 PRK14272 phosphate ABC transpo 99.3 9E-12 2E-16 115.2 10.2 158 55-234 27-228 (252)
287 PRK15093 antimicrobial peptide 99.3 4.1E-12 8.9E-17 122.2 8.1 160 55-236 30-242 (330)
288 PRK14239 phosphate transporter 99.3 8.2E-12 1.8E-16 115.5 9.7 157 55-234 28-228 (252)
289 CHL00131 ycf16 sulfate ABC tra 99.3 1.1E-11 2.4E-16 114.6 10.5 160 55-235 30-234 (252)
290 PRK14236 phosphate transporter 99.3 9.2E-12 2E-16 116.6 10.0 157 55-234 48-248 (272)
291 PRK10938 putative molybdenum t 99.3 1E-11 2.2E-16 125.8 11.0 152 55-233 26-215 (490)
292 PRK13539 cytochrome c biogenes 99.3 6.9E-12 1.5E-16 112.6 8.6 139 55-197 25-189 (207)
293 PRK14262 phosphate ABC transpo 99.3 6.1E-12 1.3E-16 116.2 8.5 158 54-234 25-226 (250)
294 PRK14275 phosphate ABC transpo 99.3 1E-11 2.2E-16 117.2 10.1 158 54-234 61-262 (286)
295 PRK10762 D-ribose transporter 99.3 4.9E-12 1.1E-16 128.4 8.5 156 54-231 274-473 (501)
296 PRK11701 phnK phosphonate C-P 99.3 8.6E-12 1.9E-16 115.8 9.1 153 55-234 29-233 (258)
297 TIGR03797 NHPM_micro_ABC2 NHPM 99.3 6.5E-12 1.4E-16 132.3 9.2 158 55-235 476-666 (686)
298 PRK14243 phosphate transporter 99.3 1.1E-11 2.4E-16 115.5 9.7 150 55-227 33-224 (264)
299 COG4598 HisP ABC-type histidin 99.3 8.8E-12 1.9E-16 106.6 8.1 156 55-237 29-236 (256)
300 cd03289 ABCC_CFTR2 The CFTR su 99.3 4.2E-12 9.1E-17 118.9 6.8 150 55-234 27-217 (275)
301 PRK14253 phosphate ABC transpo 99.3 1.1E-11 2.3E-16 114.6 9.3 158 55-235 26-226 (249)
302 cd03244 ABCC_MRP_domain2 Domai 99.3 9E-12 1.9E-16 112.9 8.6 149 55-232 27-216 (221)
303 TIGR01166 cbiO cobalt transpor 99.3 5.9E-12 1.3E-16 111.5 7.3 137 55-196 15-188 (190)
304 PRK14237 phosphate transporter 99.3 1.7E-11 3.7E-16 114.4 10.7 155 55-234 43-243 (267)
305 cd03222 ABC_RNaseL_inhibitor T 99.3 2.3E-11 5.1E-16 106.4 10.8 125 55-229 22-148 (177)
306 TIGR02324 CP_lyasePhnL phospho 99.3 1.4E-11 3.1E-16 111.9 9.8 139 55-197 31-211 (224)
307 TIGR01257 rim_protein retinal- 99.3 5.3E-12 1.2E-16 143.1 8.4 161 54-236 1961-2153(2272)
308 COG4586 ABC-type uncharacteriz 99.3 7.2E-12 1.6E-16 113.6 7.7 147 54-236 46-240 (325)
309 PRK14257 phosphate ABC transpo 99.3 9.4E-12 2E-16 119.5 9.0 159 54-236 104-307 (329)
310 TIGR02633 xylG D-xylose ABC tr 99.3 1.3E-11 2.7E-16 125.4 10.3 155 55-231 283-481 (500)
311 PRK15056 manganese/iron transp 99.3 5.4E-12 1.2E-16 118.1 7.0 134 55-197 30-204 (272)
312 PRK14259 phosphate ABC transpo 99.3 1.1E-11 2.4E-16 115.8 9.0 152 55-229 36-229 (269)
313 PRK14246 phosphate ABC transpo 99.3 2.3E-11 5.1E-16 112.9 11.1 157 55-234 33-233 (257)
314 PRK14254 phosphate ABC transpo 99.3 1.4E-11 3.1E-16 116.1 9.7 155 55-232 62-259 (285)
315 COG2274 SunT ABC-type bacterio 99.3 7.3E-12 1.6E-16 130.4 8.4 155 54-236 495-690 (709)
316 COG4608 AppF ABC-type oligopep 99.3 2E-11 4.4E-16 111.4 10.3 146 54-236 35-193 (268)
317 COG1132 MdlB ABC-type multidru 99.3 1.4E-11 3.1E-16 126.9 10.4 158 54-236 351-546 (567)
318 PRK15439 autoinducer 2 ABC tra 99.3 1.4E-11 3.1E-16 125.3 10.2 158 54-233 285-483 (510)
319 TIGR03269 met_CoM_red_A2 methy 99.3 1.6E-11 3.5E-16 125.2 10.4 156 55-232 23-248 (520)
320 PRK14258 phosphate ABC transpo 99.3 1.2E-11 2.6E-16 115.1 8.7 152 55-228 30-226 (261)
321 TIGR02323 CP_lyasePhnK phospho 99.3 2.2E-11 4.7E-16 112.7 10.3 153 55-234 26-230 (253)
322 PRK15134 microcin C ABC transp 99.3 7.5E-12 1.6E-16 127.9 7.8 158 54-234 308-507 (529)
323 cd03290 ABCC_SUR1_N The SUR do 99.3 8E-12 1.7E-16 113.1 7.0 138 55-197 24-204 (218)
324 PRK11174 cysteine/glutathione 99.3 1.3E-11 2.8E-16 127.8 9.4 151 55-235 373-565 (588)
325 PRK10418 nikD nickel transport 99.3 1.1E-11 2.4E-16 114.9 8.0 158 55-233 26-221 (254)
326 PRK14260 phosphate ABC transpo 99.3 2E-11 4.3E-16 113.5 9.5 150 55-227 30-223 (259)
327 PRK14252 phosphate ABC transpo 99.3 1.5E-11 3.3E-16 114.6 8.7 158 55-235 39-242 (265)
328 TIGR01187 potA spermidine/putr 99.3 5.2E-12 1.1E-16 121.2 5.7 151 63-235 1-183 (325)
329 PLN03211 ABC transporter G-25; 99.3 2E-11 4.3E-16 127.3 10.3 163 53-236 89-290 (659)
330 PRK10790 putative multidrug tr 99.3 3E-11 6.5E-16 125.2 11.5 157 55-235 364-556 (592)
331 PRK11176 lipid transporter ATP 99.2 2.8E-11 6E-16 125.2 10.7 151 55-235 366-560 (582)
332 cd03248 ABCC_TAP TAP, the Tran 99.2 1.8E-11 3.9E-16 111.3 8.3 150 55-229 37-224 (226)
333 PRK13541 cytochrome c biogenes 99.2 2.2E-11 4.7E-16 108.3 8.6 139 55-198 23-186 (195)
334 cd03288 ABCC_SUR2 The SUR doma 99.2 8E-12 1.7E-16 116.0 6.0 155 55-234 44-235 (257)
335 COG1134 TagH ABC-type polysacc 99.2 5.1E-11 1.1E-15 106.9 10.7 145 55-237 50-231 (249)
336 PRK11160 cysteine/glutathione 99.2 2.5E-11 5.5E-16 125.2 10.2 157 55-235 363-555 (574)
337 cd03250 ABCC_MRP_domain1 Domai 99.2 1.1E-11 2.5E-16 110.9 6.6 59 55-125 28-86 (204)
338 PRK09544 znuC high-affinity zi 99.2 1.7E-11 3.7E-16 113.5 7.9 139 55-228 27-196 (251)
339 COG4172 ABC-type uncharacteriz 99.2 2.6E-11 5.5E-16 115.4 9.0 155 55-236 310-510 (534)
340 PRK14255 phosphate ABC transpo 99.2 2.8E-11 6E-16 112.0 9.1 157 55-234 28-228 (252)
341 PRK10261 glutathione transport 99.2 5.6E-12 1.2E-16 131.1 4.9 157 55-233 39-249 (623)
342 cd00267 ABC_ATPase ABC (ATP-bi 99.2 7.8E-11 1.7E-15 101.0 11.2 129 55-228 22-155 (157)
343 PRK10982 galactose/methyl gala 99.2 4.2E-11 9.1E-16 121.3 11.1 155 55-231 271-469 (491)
344 PRK14261 phosphate ABC transpo 99.2 2.4E-11 5.1E-16 112.5 8.4 157 55-234 29-229 (253)
345 KOG2373 Predicted mitochondria 99.2 4.2E-11 9E-16 111.6 9.8 197 42-255 259-478 (514)
346 PRK14266 phosphate ABC transpo 99.2 4.2E-11 9E-16 110.7 9.7 157 55-234 26-226 (250)
347 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.2 2.5E-11 5.3E-16 110.4 8.0 40 55-95 45-84 (224)
348 TIGR00955 3a01204 The Eye Pigm 99.2 4.8E-11 1E-15 124.0 11.1 164 53-236 46-250 (617)
349 PRK15064 ABC transporter ATP-b 99.2 2E-11 4.3E-16 124.9 8.0 148 55-231 24-230 (530)
350 TIGR01257 rim_protein retinal- 99.2 2E-11 4.4E-16 138.4 8.7 160 54-236 952-1143(2272)
351 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.2 8.4E-11 1.8E-15 99.5 10.3 118 55-228 23-142 (144)
352 PRK15134 microcin C ABC transp 99.2 2.3E-11 5E-16 124.4 8.1 157 55-232 32-236 (529)
353 TIGR01194 cyc_pep_trnsptr cycl 99.2 3.8E-11 8.2E-16 123.4 9.5 154 55-231 365-548 (555)
354 TIGR03375 type_I_sec_LssB type 99.2 2.6E-11 5.7E-16 127.8 8.4 153 55-236 488-682 (694)
355 PRK14264 phosphate ABC transpo 99.2 3.9E-11 8.4E-16 114.2 8.7 157 55-234 68-281 (305)
356 TIGR00958 3a01208 Conjugate Tr 99.2 3.4E-11 7.4E-16 127.2 9.1 158 55-236 504-696 (711)
357 COG4619 ABC-type uncharacteriz 99.2 7.8E-11 1.7E-15 99.8 9.4 73 41-116 14-89 (223)
358 PRK13546 teichoic acids export 99.2 5.9E-11 1.3E-15 110.6 9.7 39 55-94 47-85 (264)
359 COG4161 ArtP ABC-type arginine 99.2 1.7E-10 3.7E-15 97.1 11.0 156 55-236 25-224 (242)
360 COG4988 CydD ABC-type transpor 99.2 8.6E-11 1.9E-15 116.9 10.8 158 55-236 344-537 (559)
361 PRK13657 cyclic beta-1,2-gluca 99.2 3.8E-11 8.2E-16 124.3 8.7 151 55-233 358-549 (588)
362 TIGR01193 bacteriocin_ABC ABC- 99.2 4E-11 8.6E-16 126.8 8.9 150 55-235 497-690 (708)
363 TIGR01842 type_I_sec_PrtD type 99.2 5.7E-11 1.2E-15 121.9 9.8 158 55-235 341-535 (544)
364 COG4618 ArpD ABC-type protease 99.2 4E-11 8.6E-16 117.0 8.0 158 55-235 359-553 (580)
365 TIGR01192 chvA glucan exporter 99.2 6.4E-11 1.4E-15 122.5 9.6 157 55-235 358-551 (585)
366 KOG0058 Peptide exporter, ABC 99.2 1.3E-10 2.9E-15 117.9 11.4 158 54-235 490-684 (716)
367 PRK10789 putative multidrug tr 99.2 7.1E-11 1.5E-15 121.8 9.7 154 55-232 338-528 (569)
368 KOG1433 DNA repair protein RAD 99.2 3E-12 6.5E-17 120.7 -0.7 315 1-326 3-322 (326)
369 TIGR01846 type_I_sec_HlyB type 99.2 7.4E-11 1.6E-15 124.4 9.6 153 55-235 480-673 (694)
370 KOG0057 Mitochondrial Fe/S clu 99.2 1.2E-10 2.6E-15 114.6 10.3 158 54-235 374-567 (591)
371 PRK11819 putative ABC transpor 99.2 1.1E-10 2.3E-15 120.1 10.5 147 55-232 30-239 (556)
372 PRK13409 putative ATPase RIL; 99.2 3.7E-11 8E-16 123.8 6.8 144 53-228 360-529 (590)
373 PLN03130 ABC transporter C fam 99.2 8E-11 1.7E-15 133.4 9.9 153 54-236 1261-1455(1622)
374 TIGR02204 MsbA_rel ABC transpo 99.2 9.4E-11 2E-15 121.0 9.6 153 55-235 363-556 (576)
375 PRK15064 ABC transporter ATP-b 99.2 5.5E-11 1.2E-15 121.6 7.6 147 55-232 342-514 (530)
376 PRK10522 multidrug transporter 99.2 1E-10 2.2E-15 120.1 9.6 155 55-232 346-528 (547)
377 TIGR02203 MsbA_lipidA lipid A 99.2 7.9E-11 1.7E-15 121.5 8.7 148 55-232 355-546 (571)
378 PLN03232 ABC transporter C fam 99.1 1E-10 2.2E-15 132.1 10.0 151 55-235 1259-1451(1495)
379 KOG0055 Multidrug/pheromone ex 99.1 1.5E-10 3.2E-15 123.9 10.6 157 55-235 376-569 (1228)
380 cd03236 ABC_RNaseL_inhibitor_d 99.1 1.8E-10 3.9E-15 106.8 9.0 146 55-227 23-213 (255)
381 PRK13545 tagH teichoic acids e 99.1 8.8E-11 1.9E-15 117.5 7.3 40 54-94 46-85 (549)
382 cd03238 ABC_UvrA The excision 99.1 1.3E-09 2.8E-14 95.3 13.6 135 55-230 18-165 (176)
383 cd03291 ABCC_CFTR1 The CFTR su 99.1 8.2E-11 1.8E-15 110.6 6.0 144 55-233 60-238 (282)
384 COG4987 CydC ABC-type transpor 99.1 3.7E-10 7.9E-15 111.2 10.6 154 54-236 360-555 (573)
385 PRK10535 macrolide transporter 99.1 2.1E-10 4.6E-15 119.9 9.2 159 55-236 31-226 (648)
386 PRK15177 Vi polysaccharide exp 99.1 1.9E-10 4.1E-15 103.8 7.7 40 55-94 10-49 (213)
387 TIGR03719 ABC_ABC_ChvD ATP-bin 99.1 2.8E-10 6.2E-15 116.9 9.7 150 54-232 27-237 (552)
388 TIGR00957 MRP_assoc_pro multi 99.1 2.7E-10 5.8E-15 129.0 10.2 158 55-236 1309-1502(1522)
389 TIGR02868 CydC thiol reductant 99.1 1.5E-10 3.2E-15 118.4 7.3 136 55-194 358-528 (529)
390 PRK10938 putative molybdenum t 99.1 3.6E-10 7.8E-15 114.5 9.8 151 54-231 282-481 (490)
391 PRK11147 ABC transporter ATPas 99.1 1.5E-10 3.2E-15 120.8 7.1 145 54-227 341-511 (635)
392 COG0396 sufC Cysteine desulfur 99.1 6.3E-10 1.4E-14 98.9 9.8 162 55-237 27-229 (251)
393 PTZ00265 multidrug resistance 99.1 7E-10 1.5E-14 124.8 12.3 72 54-127 407-482 (1466)
394 COG4167 SapF ABC-type antimicr 99.1 1.7E-09 3.7E-14 92.9 11.7 156 55-236 36-233 (267)
395 PLN03140 ABC transporter G fam 99.1 5.5E-10 1.2E-14 125.2 11.2 164 53-236 901-1104(1470)
396 TIGR03719 ABC_ABC_ChvD ATP-bin 99.1 1.8E-10 3.9E-15 118.4 6.7 145 55-228 345-515 (552)
397 TIGR02857 CydD thiol reductant 99.1 2.6E-10 5.6E-15 116.7 7.8 138 54-197 344-519 (529)
398 KOG0056 Heavy metal exporter H 99.1 9.8E-10 2.1E-14 106.8 11.1 117 55-173 561-692 (790)
399 PRK04296 thymidine kinase; Pro 99.1 1.7E-09 3.7E-14 95.9 11.7 138 58-229 2-142 (190)
400 PTZ00243 ABC transporter; Prov 99.1 5.6E-10 1.2E-14 126.4 10.6 156 55-235 1333-1526(1560)
401 PRK11819 putative ABC transpor 99.1 2.5E-10 5.4E-15 117.4 7.1 145 55-228 347-517 (556)
402 PRK10636 putative ABC transpor 99.0 2.2E-10 4.8E-15 119.5 6.6 145 54-232 334-506 (638)
403 COG4525 TauB ABC-type taurine 99.0 3.9E-10 8.5E-15 97.8 6.6 138 54-197 27-195 (259)
404 TIGR01271 CFTR_protein cystic 99.0 6.7E-10 1.5E-14 125.5 10.3 154 55-233 1242-1431(1490)
405 PTZ00265 multidrug resistance 99.0 8.2E-10 1.8E-14 124.2 10.2 150 55-228 1191-1433(1466)
406 PRK13409 putative ATPase RIL; 99.0 3.6E-10 7.8E-15 116.5 6.5 136 55-199 96-275 (590)
407 COG4136 ABC-type uncharacteriz 99.0 9E-10 2E-14 91.7 7.2 140 54-197 24-197 (213)
408 TIGR00956 3a01205 Pleiotropic 99.0 7.7E-10 1.7E-14 124.1 9.2 163 53-236 784-987 (1394)
409 TIGR00956 3a01205 Pleiotropic 99.0 2.4E-10 5.1E-15 128.2 4.9 164 53-236 82-294 (1394)
410 COG1101 PhnK ABC-type uncharac 99.0 4E-09 8.7E-14 92.9 10.9 75 54-129 28-107 (263)
411 TIGR00954 3a01203 Peroxysomal 99.0 5.3E-10 1.2E-14 117.0 6.3 140 55-227 475-652 (659)
412 PLN03073 ABC transporter F fam 99.0 8.7E-10 1.9E-14 115.9 7.2 143 54-231 531-702 (718)
413 COG4133 CcmA ABC-type transpor 99.0 2.7E-09 5.9E-14 92.1 8.8 78 55-133 25-104 (209)
414 KOG0059 Lipid exporter ABCA1 a 99.0 1.7E-09 3.7E-14 116.5 9.4 166 53-265 586-799 (885)
415 COG1119 ModF ABC-type molybden 99.0 5.6E-09 1.2E-13 93.9 10.9 57 55-111 54-113 (257)
416 COG4778 PhnL ABC-type phosphon 98.9 3.4E-09 7.4E-14 90.1 8.2 136 54-197 33-214 (235)
417 PRK11147 ABC transporter ATPas 98.9 4.4E-09 9.5E-14 109.9 10.5 40 54-94 25-64 (635)
418 PLN03140 ABC transporter G fam 98.9 3E-09 6.5E-14 119.4 9.7 164 53-236 186-421 (1470)
419 PRK10636 putative ABC transpor 98.9 3.1E-09 6.8E-14 110.9 9.2 40 54-94 23-62 (638)
420 COG4107 PhnK ABC-type phosphon 98.9 7.2E-09 1.6E-13 88.4 9.4 59 55-113 29-98 (258)
421 COG3598 RepA RecA-family ATPas 98.9 1.8E-08 4E-13 93.5 12.4 133 53-197 84-244 (402)
422 COG4674 Uncharacterized ABC-ty 98.9 2.7E-09 5.9E-14 92.6 6.1 84 42-127 17-104 (249)
423 KOG0055 Multidrug/pheromone ex 98.9 1.3E-08 2.9E-13 109.2 12.2 155 54-236 1012-1207(1228)
424 COG4172 ABC-type uncharacteriz 98.9 4.7E-09 1E-13 100.2 7.7 154 55-235 33-240 (534)
425 KOG0061 Transporter, ABC super 98.9 5.1E-09 1.1E-13 108.4 8.6 165 53-237 51-255 (613)
426 PLN03073 ABC transporter F fam 98.9 2.8E-09 6E-14 112.2 6.2 41 55-95 200-243 (718)
427 cd03271 ABC_UvrA_II The excisi 98.8 1.2E-08 2.6E-13 94.6 9.3 153 54-227 17-245 (261)
428 KOG0054 Multidrug resistance-a 98.8 2.2E-08 4.7E-13 109.8 12.5 163 46-236 1152-1356(1381)
429 cd03278 ABC_SMC_barmotin Barmo 98.8 8.1E-09 1.8E-13 92.0 7.5 59 55-114 20-86 (197)
430 TIGR01271 CFTR_protein cystic 98.8 8.7E-09 1.9E-13 116.6 9.4 146 55-235 449-629 (1490)
431 PF00005 ABC_tran: ABC transpo 98.8 1.8E-09 3.8E-14 90.1 2.1 69 55-124 8-79 (137)
432 cd00544 CobU Adenosylcobinamid 98.8 3.1E-08 6.6E-13 86.0 9.7 124 60-193 1-124 (169)
433 COG0488 Uup ATPase components 98.8 1.4E-08 3.1E-13 102.8 8.6 36 54-89 25-60 (530)
434 PLN03130 ABC transporter C fam 98.8 1.2E-08 2.6E-13 116.0 9.0 147 55-235 640-821 (1622)
435 TIGR00957 MRP_assoc_pro multi 98.8 1.5E-08 3.3E-13 115.0 9.5 148 55-235 661-843 (1522)
436 COG4615 PvdE ABC-type sideroph 98.8 3.1E-08 6.8E-13 94.4 10.0 62 54-116 345-409 (546)
437 COG5265 ATM1 ABC-type transpor 98.8 4E-08 8.7E-13 94.3 10.5 162 54-236 285-480 (497)
438 PF13479 AAA_24: AAA domain 98.8 3.7E-08 8E-13 88.9 9.6 153 58-228 3-174 (213)
439 PLN03232 ABC transporter C fam 98.8 1.1E-08 2.4E-13 115.9 7.4 148 55-235 640-821 (1495)
440 PRK07721 fliI flagellum-specif 98.7 8.1E-08 1.7E-12 95.2 11.3 110 36-149 139-261 (438)
441 COG1245 Predicted ATPase, RNas 98.7 3.6E-08 7.7E-13 95.5 8.0 154 40-227 342-530 (591)
442 cd03270 ABC_UvrA_I The excisio 98.7 2.7E-08 5.8E-13 90.6 6.4 22 55-76 18-39 (226)
443 cd03272 ABC_SMC3_euk Eukaryoti 98.7 6.7E-08 1.5E-12 88.8 8.8 148 58-228 23-235 (243)
444 smart00382 AAA ATPases associa 98.7 3.4E-07 7.3E-12 75.0 12.2 92 57-150 1-92 (148)
445 PTZ00243 ABC transporter; Prov 98.7 3.4E-08 7.4E-13 112.1 7.9 147 55-235 683-863 (1560)
446 COG0488 Uup ATPase components 98.6 4.2E-08 9.1E-13 99.4 6.2 35 53-87 343-377 (530)
447 KOG0054 Multidrug resistance-a 98.6 1.2E-07 2.7E-12 103.9 9.5 150 55-236 544-725 (1381)
448 PRK05800 cobU adenosylcobinami 98.6 1.7E-07 3.6E-12 81.5 8.3 119 59-194 2-125 (170)
449 TIGR02858 spore_III_AA stage I 98.6 3.6E-07 7.8E-12 85.2 10.4 124 44-196 100-230 (270)
450 cd03283 ABC_MutS-like MutS-lik 98.6 5.7E-07 1.2E-11 80.3 11.1 29 55-83 22-50 (199)
451 cd03243 ABC_MutS_homologs The 98.6 7.1E-07 1.5E-11 79.8 11.3 26 57-82 28-53 (202)
452 PF13401 AAA_22: AAA domain; P 98.5 5.2E-07 1.1E-11 74.3 9.5 113 57-194 3-125 (131)
453 PF07088 GvpD: GvpD gas vesicl 98.5 1.4E-06 3E-11 83.3 13.2 169 55-253 7-194 (484)
454 COG4138 BtuD ABC-type cobalami 98.5 1.1E-08 2.5E-13 87.3 -1.2 160 53-236 20-215 (248)
455 cd03280 ABC_MutS2 MutS2 homolo 98.5 5.7E-07 1.2E-11 80.3 9.2 23 57-79 26-49 (200)
456 cd03279 ABC_sbcCD SbcCD and ot 98.5 1.7E-07 3.7E-12 84.5 5.7 25 56-80 26-50 (213)
457 TIGR01618 phage_P_loop phage n 98.4 3.2E-06 6.9E-11 76.3 12.7 128 54-196 7-144 (220)
458 cd03240 ABC_Rad50 The catalyti 98.4 7.6E-07 1.6E-11 79.8 6.5 25 57-82 22-46 (204)
459 cd03227 ABC_Class2 ABC-type Cl 98.4 5.2E-06 1.1E-10 71.6 11.5 121 57-196 20-142 (162)
460 PF00004 AAA: ATPase family as 98.3 9.3E-06 2E-10 66.6 10.9 113 61-198 1-115 (132)
461 cd00009 AAA The AAA+ (ATPases 98.3 1.3E-05 2.9E-10 66.1 11.4 79 57-149 18-97 (151)
462 cd03274 ABC_SMC4_euk Eukaryoti 98.3 5.5E-07 1.2E-11 81.2 3.0 21 59-79 26-46 (212)
463 KOG0927 Predicted transporter 98.2 1.5E-06 3.3E-11 85.9 6.1 74 15-89 366-447 (614)
464 COG4178 ABC-type uncharacteriz 98.2 6.1E-06 1.3E-10 83.9 9.3 35 54-88 415-449 (604)
465 cd03275 ABC_SMC1_euk Eukaryoti 98.2 3.1E-05 6.8E-10 71.4 13.1 25 59-83 23-47 (247)
466 KOG0065 Pleiotropic drug resis 98.2 6E-06 1.3E-10 89.5 9.3 72 53-126 812-886 (1391)
467 PF00448 SRP54: SRP54-type pro 98.2 2.9E-05 6.3E-10 69.1 12.3 88 59-149 2-96 (196)
468 cd01128 rho_factor Transcripti 98.2 5E-06 1.1E-10 76.7 7.5 102 45-149 6-116 (249)
469 PF01695 IstB_IS21: IstB-like 98.2 3.2E-06 6.9E-11 74.1 5.7 79 54-149 43-121 (178)
470 KOG2355 Predicted ABC-type tra 98.2 4.2E-06 9.1E-11 73.6 6.2 44 55-99 37-80 (291)
471 PRK06002 fliI flagellum-specif 98.1 1.1E-06 2.5E-11 86.7 3.0 110 36-149 146-267 (450)
472 PTZ00361 26 proteosome regulat 98.1 1.9E-05 4E-10 78.5 11.2 123 54-198 213-335 (438)
473 cd03285 ABC_MSH2_euk MutS2 hom 98.1 3.4E-05 7.3E-10 70.1 11.7 27 55-81 27-53 (222)
474 PTZ00454 26S protease regulato 98.1 1.4E-05 3E-10 78.8 9.7 125 53-199 174-298 (398)
475 TIGR01026 fliI_yscN ATPase Fli 98.1 7.5E-06 1.6E-10 81.4 7.8 110 36-149 144-266 (440)
476 PRK07196 fliI flagellum-specif 98.1 2.3E-06 5E-11 84.5 4.0 110 36-149 136-258 (434)
477 cd03287 ABC_MSH3_euk MutS3 hom 98.1 2.8E-05 6.2E-10 70.5 10.4 34 55-88 28-62 (222)
478 cd03273 ABC_SMC2_euk Eukaryoti 98.1 1.2E-05 2.7E-10 74.3 8.2 27 58-84 25-51 (251)
479 PRK10416 signal recognition pa 98.1 2.7E-05 5.9E-10 74.4 10.6 90 56-149 112-209 (318)
480 KOG0064 Peroxisomal long-chain 98.1 2.1E-05 4.5E-10 77.9 9.8 125 55-196 505-670 (728)
481 COG1129 MglA ABC-type sugar tr 98.1 1.5E-05 3.2E-10 79.6 8.6 152 55-232 282-480 (500)
482 PRK12726 flagellar biosynthesi 98.0 3.6E-05 7.8E-10 74.5 10.9 90 55-149 203-298 (407)
483 cd03281 ABC_MSH5_euk MutS5 hom 98.0 2.5E-05 5.4E-10 70.5 9.4 24 58-81 29-52 (213)
484 cd03282 ABC_MSH4_euk MutS4 hom 98.0 3.2E-05 6.9E-10 69.3 10.0 30 55-84 26-55 (204)
485 cd03284 ABC_MutS1 MutS1 homolo 98.0 2.8E-05 6.1E-10 70.3 9.6 24 59-82 31-54 (216)
486 PRK11889 flhF flagellar biosyn 98.0 0.00013 2.8E-09 71.0 14.5 87 58-149 241-333 (436)
487 cd03115 SRP The signal recogni 98.0 0.00012 2.5E-09 63.6 13.1 87 60-148 2-94 (173)
488 PRK00349 uvrA excinuclease ABC 98.0 1.7E-05 3.7E-10 85.6 9.2 25 55-79 632-656 (943)
489 TIGR00767 rho transcription te 98.0 9.4E-06 2E-10 79.0 6.2 105 42-149 155-268 (415)
490 cd01131 PilT Pilus retraction 98.0 5E-05 1.1E-09 67.7 10.3 34 60-93 3-37 (198)
491 TIGR03499 FlhF flagellar biosy 98.0 4E-05 8.6E-10 72.2 10.0 82 56-145 192-281 (282)
492 smart00534 MUTSac ATPase domai 98.0 3.9E-05 8.4E-10 67.6 9.4 23 60-82 1-23 (185)
493 TIGR00064 ftsY signal recognit 98.0 0.00017 3.6E-09 67.5 13.9 90 57-149 71-167 (272)
494 cd01130 VirB11-like_ATPase Typ 98.0 1.3E-05 2.8E-10 70.7 6.1 87 55-146 22-110 (186)
495 PF05729 NACHT: NACHT domain 98.0 6.6E-05 1.4E-09 63.9 10.4 122 59-194 1-129 (166)
496 PRK09183 transposase/IS protei 98.0 4E-05 8.6E-10 71.3 9.5 41 55-95 99-139 (259)
497 PF05621 TniB: Bacterial TniB 98.0 0.00019 4.2E-09 67.3 13.9 134 40-192 43-187 (302)
498 KOG0060 Long-chain acyl-CoA tr 98.0 4.7E-05 1E-09 76.2 10.3 35 54-88 457-491 (659)
499 PRK08181 transposase; Validate 98.0 2.6E-05 5.7E-10 72.7 8.0 78 55-149 103-180 (269)
500 PRK14974 cell division protein 97.9 0.00015 3.3E-09 69.6 13.2 89 58-149 140-235 (336)
No 1
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=100.00 E-value=9.5e-66 Score=482.59 Aligned_cols=320 Identities=61% Similarity=0.958 Sum_probs=290.7
Q ss_pred HHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 017792 6 LALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ 85 (366)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~ 85 (366)
++|+.++++|+|+||++++|+++++......+.+|||++.||.+||.||+|+|++++|+||+|||||||++++++.+++.
T Consensus 1 ~~l~~~~~~i~k~~g~~~i~~lg~~~~~~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~ 80 (322)
T PF00154_consen 1 KALEKALKQIEKKFGKGSIMRLGDNAESQNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ 80 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSSEETTS-C-GCSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhCCCceeecCCcccccccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc
Confidence 58999999999999999999999864467899999999999999998999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHH
Q 017792 86 GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAM 165 (366)
Q Consensus 86 gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~ 165 (366)
++.|+|||.|+.+++.+++++|++++++++.+|.+.++.++.++.+++++.+++|||||+.++.|..++++++++.+.+.
T Consensus 81 g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~ 160 (322)
T PF00154_consen 81 GGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELEGEIGDQQVGL 160 (322)
T ss_dssp T-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHTTSTSSTSSSH
T ss_pred cceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccEEEEecCcccCCHHHHhhccccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEE
Q 017792 166 QARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAV 245 (366)
Q Consensus 166 ~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l 245 (366)
+||+|+++||++...+.+.++++|||||.|++++. +|++| ++++||++|.|+|++||.+++.+.++++++..|+++.+
T Consensus 161 ~Ar~ms~~lr~lt~~l~~~~~~~i~INQ~R~~ig~-~~g~~-~~t~GG~alkfyas~rl~i~k~~~ik~~~~~iG~~~~v 238 (322)
T PF00154_consen 161 QARLMSQALRKLTPLLSKSNTTLIFINQVRDKIGV-MFGNP-ETTPGGRALKFYASVRLEIRKKEQIKEGDEVIGNKIKV 238 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-EEEEEEEESSSSSS-SSSSS-SCCTSHHHHHHHCSEEEEEEEEEEEEETTCECEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhhceEEEEeehHHHHHhh-ccCCC-cCCCCCchhhhhhhhHHhhhcccccccCCcccccEEEE
Confidence 99999999999999999999999999999999986 36666 78899999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHHHHH
Q 017792 246 KIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIKLR 324 (366)
Q Consensus 246 ~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~~~~ 324 (366)
+++|||+++|++.+++.|.|+.||+...+++++|.+.|+|.++|+||+|+++++ ||++.+.+||++||+++++|+.++|
T Consensus 239 kv~KnKva~P~k~a~~~i~y~~Gid~~~~lldla~~~giI~ksG~wy~y~~e~~gqG~~~~~~~L~en~e~~~ei~~~ir 318 (322)
T PF00154_consen 239 KVVKNKVAPPFKKAEFDIYYGRGIDRESELLDLAVELGIIKKSGSWYSYNGEKIGQGRENAKKYLKENPELAEEIEQKIR 318 (322)
T ss_dssp EEEEESSS-TTEEEEEEEETTTEE-HHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred EEEEcccCCCcceeEEEEecCCeECccchHHHHHHHcChhhccCceEEECCcEecccHHHHHHHHHHCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHh
Q 017792 325 EKL 327 (366)
Q Consensus 325 ~~~ 327 (366)
+++
T Consensus 319 ~~~ 321 (322)
T PF00154_consen 319 EKL 321 (322)
T ss_dssp HHT
T ss_pred Hhc
Confidence 986
No 2
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=100.00 E-value=1.3e-64 Score=476.77 Aligned_cols=323 Identities=60% Similarity=0.956 Sum_probs=306.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|.++|+.|+++|+++||++++|++++. ....++++|||++.||.+||+||+|+|++++|+||+||||||||++++..+
T Consensus 1 ~~~~~~~~~~~~i~~~~g~~~~~~~~~~-~~~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~ 79 (325)
T cd00983 1 EKQKALELALKQIEKKFGKGSIMKLGDD-AVQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEA 79 (325)
T ss_pred CchHHHHHHHHHHHHHhCCcceEECccc-cccCCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4778999999999999999999999985 567899999999999999988999999999999999999999999999999
Q ss_pred hhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 83 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 83 ~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
+..++.|+|+|+|+.+++.+++++|++.+++.+.+|.+.++.++.+..++++..++++||||+++++++.++++++++.+
T Consensus 80 ~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~ 159 (325)
T cd00983 80 QKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSH 159 (325)
T ss_pred HHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCEEEEcchHhhcccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889998888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccE
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~ 242 (366)
.+.++|.|.++|++|...++++++++|+|||++..++. +|++| ++++||++++|+++.|+.+++...++++++..|++
T Consensus 160 ~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~ig~-~~g~~-e~~~GG~~L~~~ss~rl~lrk~~~~k~~~~~~G~~ 237 (325)
T cd00983 160 VGLQARLMSQALRKLTGSINKSNTTVIFINQLREKIGV-MFGNP-ETTTGGNALKFYSSVRLDIRRIETIKDGDEVIGNR 237 (325)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-ccCCC-ccCCCchHHhhhcceEEEEEeecccccCCcccccE
Confidence 88899999999999999999999999999999998775 25555 88999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 017792 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 321 (366)
Q Consensus 243 ~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~ 321 (366)
++++++|||.+||++.++|.|.|+.||++.++++++|.+.|+|.++|+||+|.++++ ||++.+..||++||+++++|+.
T Consensus 238 ~~~~v~Knk~~~p~~~~~~~i~~~~Gi~~~~~~~~~a~~~g~i~k~g~w~~~~~~~~~qg~~~~~~~l~~~~~~~~~~~~ 317 (325)
T cd00983 238 TKVKVVKNKVAPPFKTAEFDILFGEGISREGEIIDLAVELGIIKKSGSWYSYGDEKLGQGRENAKEYLKENPELADEIEK 317 (325)
T ss_pred EEEEEEecccCCCCCceEEEEEcCcccchhhhHHHHHHhCCcEEcCCCEEEECCceeccCHHHHHHHHHhCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhc
Q 017792 322 KLREKLV 328 (366)
Q Consensus 322 ~~~~~~~ 328 (366)
++++++.
T Consensus 318 ~~~~~~~ 324 (325)
T cd00983 318 KVREKLG 324 (325)
T ss_pred HHHHHhc
Confidence 9998764
No 3
>PRK09354 recA recombinase A; Provisional
Probab=100.00 E-value=2.7e-64 Score=477.52 Aligned_cols=325 Identities=61% Similarity=0.969 Sum_probs=308.2
Q ss_pred chHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.+|.++|+.|+++|+++||++++|+|++. .....+++|||++.||.+||+||+|+|++++|+||+||||||||++++..
T Consensus 5 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~~-~~~~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~ 83 (349)
T PRK09354 5 EEKQKALEAALKQIEKQFGKGSIMRLGDD-AAMDVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE 83 (349)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCceEcccc-cccCCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999999985 44578999999999999998899999999999999999999999999999
Q ss_pred HhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchh
Q 017792 82 AQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 82 ~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
.+..++.|+|||+|+.+++.+++++|++++++.+.+|.+.++.++.+..++++..+++|||||+++++++.++++++++.
T Consensus 84 ~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~ 163 (349)
T PRK09354 84 AQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDS 163 (349)
T ss_pred HHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999988888
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcccccc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGS 241 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~ 241 (366)
+.+.++|.+.++|++|...++++++|+|+|||++.+++. .|++| +++.||+++.|++..|+.++|...++.++...|+
T Consensus 164 ~~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQvr~~ig~-~~g~p-e~~~GG~aL~~~ss~rl~lrr~~~iK~~~~~~G~ 241 (349)
T PRK09354 164 HVGLQARLMSQALRKLTGNISKSNTTVIFINQIREKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGTIKDGDEVIGN 241 (349)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCcEEEEEEeeeecccc-ccCCC-CcCCCchhhHhhheeeeEEecccccccCCceecc
Confidence 888999999999999999999999999999999998774 25566 7899999999999999999999889999999999
Q ss_pred EEEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHH
Q 017792 242 QIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELV 320 (366)
Q Consensus 242 ~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~ 320 (366)
+++++++|||.+||++.+.|.|.|+.||++.++++++|.+.|+|.++|+||+|.++++ ||++.+..||++||+++++|+
T Consensus 242 ~~r~~vvKnk~~~p~~~a~~~i~~~~Gi~~~~~~~d~a~~~g~i~k~g~w~~~~~~~~~qg~~~~~~~l~~~~~~~~~~~ 321 (349)
T PRK09354 242 RTKVKVVKNKVAPPFKQAEFDIMYGEGISREGELIDLGVELGIIEKSGAWYSYNGEKIGQGRENAKQYLKENPELADEIE 321 (349)
T ss_pred eEEEEEEecccCCCCCceEEEEEcCCccchhhhHHHHHHhCCcEEcccCEEEECCceecCcHHHHHHHHHhCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHhcc
Q 017792 321 IKLREKLVV 329 (366)
Q Consensus 321 ~~~~~~~~~ 329 (366)
.++++++..
T Consensus 322 ~~~~~~~~~ 330 (349)
T PRK09354 322 KKIREKLGL 330 (349)
T ss_pred HHHHHHhcC
Confidence 999999865
No 4
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=100.00 E-value=2.7e-63 Score=467.55 Aligned_cols=320 Identities=60% Similarity=0.957 Sum_probs=302.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|.++|+.|+++|+++||++++|++++. ....++++|||++.||.+||+||+|+|++++|+|||||||||||++++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~ 79 (321)
T TIGR02012 1 EKQKALEAALAQIEKQFGKGSIMRLGEK-SVMDVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEA 79 (321)
T ss_pred ChHHHHHHHHHHHHHHcCcceeEECccc-ccccCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3678999999999999999999999963 456789999999999999988999999999999999999999999999999
Q ss_pred hhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 83 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 83 ~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
++.++.|+|||+|+.+++.+++++|++++++.+.++.+.++.++.+..++++..++++||||++++.+..++++++|+.+
T Consensus 80 ~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~ 159 (321)
T TIGR02012 80 QKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSH 159 (321)
T ss_pred HHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcEEEEcchhhhccchhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999888999999999999998889999888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccE
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~ 242 (366)
.+.++|.|.++|++|...++++|+|+|+|||++..++. +|++| +++.||+++.|++..++.+++...++.++...|++
T Consensus 160 ~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~~~g~-~~~~~-e~~~GG~aL~~~ss~r~~lrr~~~iK~~~~~~g~~ 237 (321)
T TIGR02012 160 VGLQARLMSQALRKLTGALSKSNTTAIFINQIREKIGV-MFGNP-ETTTGGRALKFYASVRLDIRRIGQVKQGEEVVGNR 237 (321)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeccCc-ccCCC-ccCcCccHHHHHHhHhHhhhhhhccccCCceeccE
Confidence 88899999999999999999999999999999998775 25555 78999999999999999999998899999999999
Q ss_pred EEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 017792 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 321 (366)
Q Consensus 243 ~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~ 321 (366)
++++++|||++||++.++|.|.|+.||++.++++++|.+.|+|.++|+||+|.++++ ||++.+.+||++||+++++|+.
T Consensus 238 ~~~~v~Knk~~~p~~~~~~~i~~~~Gi~~~~~~~~~a~~~g~i~k~g~w~~~~~~~~~qg~~~~~~~l~~~~~~~~~~~~ 317 (321)
T TIGR02012 238 TKVKVVKNKVAPPFKEAEFDILYGEGISKLGEIIDLAVELDIIKKAGSWYSYGDEKLGQGRENAKAYLKENPELAQEIEK 317 (321)
T ss_pred EEEEEEECCCCCCCCceEEEEEcCCccchhhHHHHHHHhCCcEEcccCEEEECCcEecccHHHHHHHHHhCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHH
Q 017792 322 KLRE 325 (366)
Q Consensus 322 ~~~~ 325 (366)
++|+
T Consensus 318 ~~~~ 321 (321)
T TIGR02012 318 KVRE 321 (321)
T ss_pred HHhC
Confidence 9873
No 5
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.9e-42 Score=315.35 Aligned_cols=271 Identities=56% Similarity=0.913 Sum_probs=244.0
Q ss_pred chHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
..+.++++.+..++++.|+++++|.++.......+..||||+..||.+|| ||+|.|.|++|+||+||||||+|+|++..
T Consensus 5 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TGs~~LD~~LG-GGl~~g~ItEiyG~~gsGKT~lal~~~~~ 83 (279)
T COG0468 5 IDEEKALEAALAQIEKAFGKGSIMALGGDERREDIEAISTGSLALDEALG-GGLPRGRITEIYGPESSGKTTLALQLVAN 83 (279)
T ss_pred chhhhHHHHHHHHHHHhhcccchhhhhHHHHhhccccccccchhHHHHhc-CCcccceEEEEecCCCcchhhHHHHHHHH
Confidence 45778999999999999999999999643345669999999999999999 99999999999999999999999999999
Q ss_pred HhhcCCeEEEEeCCCCCCHHHHhhcccc-cCcceecCCCCHHHHHHHHHHHHhcCC--ceEEEEecccccCCCCccCCcc
Q 017792 82 AQRQGGYCVFIDAEHALDPSLAETIGVK-TENLLLAQPDCGEQALSLVDTLIRSGS--VDVVVVDSVAALVPKGELDGEM 158 (366)
Q Consensus 82 ~~~~gg~vl~id~e~~~~~~~~~~ig~~-~~~~~~~~~~~~e~~l~~~~~~~~~~~--~~lvviDsl~~l~~~~~l~~~~ 158 (366)
+++.++.|+|||+|+.+++.+++.++.. .+++++.++.+.++.+.++..+..... ++++||||++++++..+..
T Consensus 84 aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~--- 160 (279)
T COG0468 84 AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIE--- 160 (279)
T ss_pred hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCEEEEecCcccchhhhcC---
Confidence 9999999999999999999999999999 999999999999999999998887777 9999999999999644443
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccc
Q 017792 159 GDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEET 238 (366)
Q Consensus 159 g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~ 238 (366)
+...+.++|.|++.++.|...+++++++||++||++.+++. +|++| .++.||++++|++..|+.+++...++ ..
T Consensus 161 -d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~-~f~~~-~~~~GG~~L~~~as~rl~l~k~~~~~--~~- 234 (279)
T COG0468 161 -DGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGV-MFGDP-ETTTGGNALKFYASVRLDLRRIESLK--ED- 234 (279)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeeecCc-ccCCc-ccCCCchHHHhhhheEEEEeeccccc--cc-
Confidence 35567889999999999999999999999999999999887 35566 78999999999999999999987666 22
Q ss_pred cccEEEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhc
Q 017792 239 IGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKH 282 (366)
Q Consensus 239 ~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~ 282 (366)
.|.++.++++|||..||++.+.|+|+++.+++..+++++.+...
T Consensus 235 ~g~~r~~~vvk~~~~p~~~~a~f~I~~~~~~~~~~~~~~~~~~~ 278 (279)
T COG0468 235 VGNKRRVKVVKNKVAPPFKEAEFDITYGGGIDREGELIDLGVKQ 278 (279)
T ss_pred cCCeEEEEEEeCCCCCCCceeEEEeecCcccccccchhhhhhcc
Confidence 67788999999999999999999999999999999998877654
No 6
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=100.00 E-value=8.1e-41 Score=343.66 Aligned_cols=270 Identities=55% Similarity=0.883 Sum_probs=242.6
Q ss_pred chHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+++|+.++++|+++||++++|++++. ....+.++|||++.||.+||.||+|+|++++|+|++||||||||++++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~ 83 (790)
T PRK09519 5 PDREKALELAVAQIEKSYGKGSVMRLGDE-ARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (790)
T ss_pred hHHHHHHHHHHHHHHHHhccchhcccccc-cccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36788999999999999999999999974 45678999999999999997689999999999999999999999999999
Q ss_pred HhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchh
Q 017792 82 AQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 82 ~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
.+..++.|+|+++|+.+++.+++++|++++++.+.++.+.++++..+..++.+..++++||||+++++++.++++.+++.
T Consensus 84 a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~ 163 (790)
T PRK09519 84 AQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDS 163 (790)
T ss_pred HHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchhhhcchhhccCCCCcc
Confidence 99999999999999999999999999999999999999999999999998888899999999999999888999888776
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcccccc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGS 241 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~ 241 (366)
+.+.++|.+.++|++|.+.++++|+|+|+|||++..++. +|++| +.+.||++++|+++.||.|+++..++++.+..|+
T Consensus 164 ~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQv~~~~g~-~fg~p-~~~~GG~~l~h~ss~Ri~lrk~~~ik~~~~~~G~ 241 (790)
T PRK09519 164 HVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGV-MFGSP-ETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 241 (790)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceecCCC-cCCCC-CcCCCCcccceeccEEEEeeeccccccCccccce
Confidence 777888988999999999999999999999999998875 36666 8899999999999999999999889988888999
Q ss_pred EEEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHH
Q 017792 242 QIAVKIVKNKLAPPFKTAQFELEFGKGISRESEII 276 (366)
Q Consensus 242 ~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~ 276 (366)
++.++++||+..| ...+.|.+. ...-...++++
T Consensus 242 ~~~~kv~ks~cLp-e~e~v~~i~-tG~~v~i~elv 274 (790)
T PRK09519 242 RTRVKVVKNKCLA-EGTRIFDPV-TGTTHRIEDVV 274 (790)
T ss_pred EEEEEEEECCCCC-CceEEEEec-CCCEEEHHHhh
Confidence 9999999999875 456667776 22244455555
No 7
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=100.00 E-value=6.1e-32 Score=257.75 Aligned_cols=246 Identities=28% Similarity=0.397 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 5 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
+++++.+.+.+...|-++.-+... .....+++||++.||.+|| |||+.|++++|+|+||||||+||++++...+.
T Consensus 78 ~ki~~~a~~~~~~~~~ta~~~~~~----~~~~~~isTG~~~LD~lLg-GGi~~G~ItEI~G~~GsGKTql~lqlav~~ql 152 (344)
T PLN03187 78 DKICEAAEKLLNQGFITGSDALLK----RKSVVRITTGSQALDELLG-GGIETRCITEAFGEFRSGKTQLAHTLCVTTQL 152 (344)
T ss_pred HHHHHHHHHhhcccCCcHHHHHhh----hccCceecCCcHhHHhhcC-CCCCCCeEEEEecCCCCChhHHHHHHHHHHhc
Confidence 345666666666666554433322 2467899999999999999 99999999999999999999999999987753
Q ss_pred c------CCeEEEEeCCCCCCHH----HHhhccccc----CcceecCCCCHHHHHHHHHH---HHhcCCceEEEEecccc
Q 017792 85 Q------GGYCVFIDAEHALDPS----LAETIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAA 147 (366)
Q Consensus 85 ~------gg~vl~id~e~~~~~~----~~~~ig~~~----~~~~~~~~~~~e~~l~~~~~---~~~~~~~~lvviDsl~~ 147 (366)
. ++.|+|||+|+++.+. +++++|+++ +++.+.++.+.++.+..+.. .+...+++++||||+++
T Consensus 153 p~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 153 PTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred chhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 1 3689999999998864 456677765 56788888888887665544 45566799999999999
Q ss_pred cCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEE
Q 017792 148 LVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNI 226 (366)
Q Consensus 148 l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l 226 (366)
++ +.++.+. ++. ....+.+.+.++.|.+.++++|++||++||++.+.+... +++| ..++||..|.|.++.|+.|
T Consensus 233 l~-r~~~~~r-g~l--~~rq~~L~~~~~~L~~lA~~~~vavvvTNqv~~~~~~~~~~~~~-~~pagG~~~~h~~~~Rl~l 307 (344)
T PLN03187 233 LF-RVDFTGR-GEL--AERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISDP-KKPAGGHVLAHAATIRLML 307 (344)
T ss_pred hh-hccccCc-cch--HHHHHHHHHHHHHHHHHHHHcCCEEEEEecEEEcCCcccccCCC-CCCCCchhhheeeeEEEEE
Confidence 98 5555442 211 123344667777788888899999999999998766432 4444 5899999999999999999
Q ss_pred EEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCCc
Q 017792 227 KRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISR 271 (366)
Q Consensus 227 ~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~ 271 (366)
++.. +..+.++++|++..|+. .+.|.|+ +.||..
T Consensus 308 ~k~~---------~~~R~~~v~ksp~lp~~-~~~f~It-~~GI~d 341 (344)
T PLN03187 308 RKGK---------GEQRVCKVFDAPNLPEA-EAEFQIT-SGGIMD 341 (344)
T ss_pred EcCC---------CCeEEEEEEECCCCCCc-eEEEEEe-CCCccC
Confidence 9753 23347999999986654 5789999 889864
No 8
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=100.00 E-value=5.2e-32 Score=256.50 Aligned_cols=244 Identities=26% Similarity=0.409 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-
Q 017792 6 LALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR- 84 (366)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~- 84 (366)
++++.+.+.+...|.++.-+. + ......+++||++.||.+|| ||+|+|++++|+|+||||||+||++++...+.
T Consensus 49 ~i~~~~~~~~~~~~~ta~~~~--~--~~~~~~~isTG~~~LD~lLg-GGi~~G~iteI~G~~GsGKTql~lqla~~~~~~ 123 (313)
T TIGR02238 49 KIKEAASKIINPGFITAFEIS--Q--KRKKVLKITTGSQALDGILG-GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLP 123 (313)
T ss_pred HHHHHHHhhhcccCccHHHHH--H--hhccCceeCCCCHHHHHHhC-CCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcc
Confidence 445555555555555443222 1 23567899999999999999 99999999999999999999999999976653
Q ss_pred -----cCCeEEEEeCCCCCCHH----HHhhccccc----CcceecCCCCHHHHHHHHHH---HHhcCCceEEEEeccccc
Q 017792 85 -----QGGYCVFIDAEHALDPS----LAETIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 85 -----~gg~vl~id~e~~~~~~----~~~~ig~~~----~~~~~~~~~~~e~~l~~~~~---~~~~~~~~lvviDsl~~l 148 (366)
.++.|+|||+|+++++. +++++|+++ +++.+.++.+.++.++.+.. .+...+++++||||++++
T Consensus 124 ~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal 203 (313)
T TIGR02238 124 REMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMAL 203 (313)
T ss_pred hhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHh
Confidence 25689999999998754 566778765 46778888888887766554 345568999999999999
Q ss_pred CCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc-C-CCCeeeccCCceeeeeceEEEEE
Q 017792 149 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG-F-GGPTEVTCGGNALKFYASVRLNI 226 (366)
Q Consensus 149 ~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~-~-~~~~~~~~gG~~l~~~ad~~i~l 226 (366)
+ +.++.+. ++. ..+.+.+.+.+..|.+.+++++++||+|||++.+.+..+ | ++| ..|+||+.|+|+++.||.|
T Consensus 204 ~-r~~~~~~-g~~--~~r~~~l~~~~~~L~~la~~~~vavvitNqv~~~~~~~~~~~~~~-~~p~gG~~~~h~~~~Rl~l 278 (313)
T TIGR02238 204 F-RVDFSGR-GEL--SERQQKLAQMLSRLNKISEEFNVAVFVTNQVQADPGATMTFIADP-KKPIGGHVLAHASTTRILL 278 (313)
T ss_pred h-hhhccCc-cch--HHHHHHHHHHHHHHHHHHHHcCcEEEEECceEecCCcccccCCCC-ccCcchhhhhhheeEEEEE
Confidence 8 4555432 221 122234566677777777899999999999999876432 3 455 6799999999999999999
Q ss_pred EEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCC
Q 017792 227 KRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGIS 270 (366)
Q Consensus 227 ~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~ 270 (366)
++.+ +.++.++++|++..|+ ..+.|.|. +.||.
T Consensus 279 ~k~~---------~~~R~~~~~~sp~~p~-~~~~f~i~-~~Gi~ 311 (313)
T TIGR02238 279 RKGR---------GEERVAKLYDSPDMPE-AEASFQIT-EGGIA 311 (313)
T ss_pred EecC---------CCeEEEEEeeCCCCCC-eEEEEEEe-CCccc
Confidence 9753 2234799999998776 46889998 88875
No 9
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=99.97 E-value=6.5e-31 Score=251.00 Aligned_cols=222 Identities=27% Similarity=0.451 Sum_probs=175.1
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEeCCCCCCHH----HH
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPS----LA 103 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~------~gg~vl~id~e~~~~~~----~~ 103 (366)
....+++||++.||.+|+ ||+++|++++|+|+||+|||+||++++..++. .++.|+|||+|+++.+. ++
T Consensus 100 ~~~~~i~tG~~~LD~lL~-GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia 178 (342)
T PLN03186 100 QEIIQITTGSRELDKILE-GGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIA 178 (342)
T ss_pred cCcceeCCCCHHHHHhhc-CCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHH
Confidence 457899999999999999 99999999999999999999999999977653 23589999999998854 45
Q ss_pred hhccccc----CcceecCCCCHHHHHHHHHH---HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHH
Q 017792 104 ETIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 176 (366)
Q Consensus 104 ~~ig~~~----~~~~~~~~~~~e~~l~~~~~---~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~ 176 (366)
+++++++ +++.+....+.+++...+.. .+...+++++||||+++++ +.++.+. ++.. .+.+.+.+.++.
T Consensus 179 ~~~~~~~~~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alf-r~~~~~~-g~l~--~r~~~L~~~l~~ 254 (342)
T PLN03186 179 ERFGLNGADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATALY-RTEFSGR-GELS--ARQMHLGKFLRS 254 (342)
T ss_pred HHcCCChhhhccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHH-HHHhcCC-ccHH--HHHHHHHHHHHH
Confidence 6667765 56777777788777665543 3556789999999999998 4544432 2211 222346677777
Q ss_pred HHHHhhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 255 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~ 255 (366)
|.+.++++|++||++||++..++..+ +++|...|+||..|+|+++.||.|+++. +..+.+++.|+++.|+
T Consensus 255 L~~lA~~~~vaVviTNqv~~~~~~~~~~~~~~~~P~gG~~~~h~~~tRl~L~k~~---------~~~R~~~v~ksp~~p~ 325 (342)
T PLN03186 255 LQRLADEFGVAVVITNQVVAQVDGSAFFAGPQLKPIGGNIMAHASTTRLALRKGR---------GENRICKVISSPCLPE 325 (342)
T ss_pred HHHHHHHcCCEEEEEcCEEEccCCccccCCCccccchhHHHHhhccEEEEEEecC---------CCeEEEEEEECCCCCC
Confidence 77777889999999999988776532 6788678999999999999999999753 2334799999999887
Q ss_pred CCeeEEEEEeCCCCCc
Q 017792 256 FKTAQFELEFGKGISR 271 (366)
Q Consensus 256 ~~~~~~~i~~~~Gi~~ 271 (366)
.. +.|.|. +.||..
T Consensus 326 ~e-~~F~I~-~~Gi~~ 339 (342)
T PLN03186 326 AE-ARFSIS-SEGVTD 339 (342)
T ss_pred eE-EEEEEE-CCceec
Confidence 54 899999 888864
No 10
>PTZ00035 Rad51 protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=249.12 Aligned_cols=222 Identities=26% Similarity=0.434 Sum_probs=174.2
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEeCCCCCCHH----HH
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPS----LA 103 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~------~gg~vl~id~e~~~~~~----~~ 103 (366)
....+++||++.||.+|+ ||+++|++++|+|+|||||||||++++...+. .++.|+||++|+.+.+. ++
T Consensus 95 ~~~~~isTG~~~LD~lLg-GGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia 173 (337)
T PTZ00035 95 KNIIRITTGSTQLDKLLG-GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIA 173 (337)
T ss_pred ccCccccCCcHHHHHHhC-CCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHH
Confidence 457899999999999999 99999999999999999999999999988773 46789999999988753 45
Q ss_pred hhccccc----CcceecCCCCHHHHHHHHHH---HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHH
Q 017792 104 ETIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 176 (366)
Q Consensus 104 ~~ig~~~----~~~~~~~~~~~e~~l~~~~~---~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~ 176 (366)
+++++++ +++.+.+..+.++.++.+.. .+....++++||||+++++ +.++.+. ++ ...+.+.+.+.++.
T Consensus 174 ~~~g~~~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~-r~~~~~~-~~--~~~r~~~l~~~~~~ 249 (337)
T PTZ00035 174 ERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATALF-RVDYSGR-GE--LAERQQHLGKFLRA 249 (337)
T ss_pred HHhCCChHhHhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHHhh-hhhccCc-cc--HHHHHHHHHHHHHH
Confidence 5667654 57778888888887776543 3445689999999999988 4555432 11 11233456677777
Q ss_pred HHHHhhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 255 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~ 255 (366)
|.+.++++|++||+|||++...+..+ |.+....++||+.|.|+++.||.|++.. +..+.++++|++..|+
T Consensus 250 L~~la~~~~vavvvtNqv~~~~~~~~~~~~~~~~p~gG~~~~h~~~~Rl~l~k~~---------~~~R~~~i~ksp~~p~ 320 (337)
T PTZ00035 250 LQKLADEFNVAVVITNQVMADVDGASMFVADPKKPIGGHIIAHASTTRLSLRKGR---------GEQRICKIYDSPNLPE 320 (337)
T ss_pred HHHHHHHcCcEEEEecceEEecCCccccCCCCccCCchHHHHhheeEEEEEEecC---------CCeeEEEEEECCCCCC
Confidence 77777889999999999998865422 4333478999999999999999999753 2234799999998876
Q ss_pred CCeeEEEEEeCCCCCc
Q 017792 256 FKTAQFELEFGKGISR 271 (366)
Q Consensus 256 ~~~~~~~i~~~~Gi~~ 271 (366)
. .+.|.|+ +.||..
T Consensus 321 ~-~~~f~It-~~Gi~~ 334 (337)
T PTZ00035 321 S-EAVFAIS-EGGIID 334 (337)
T ss_pred e-eEEEEEe-CCcccc
Confidence 5 4789999 889864
No 11
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=99.97 E-value=3.7e-30 Score=238.02 Aligned_cols=221 Identities=31% Similarity=0.502 Sum_probs=165.3
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEeCCCCCCHHHH----h
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPSLA----E 104 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~------gg~vl~id~e~~~~~~~~----~ 104 (366)
...+|+||++.||.+|+ ||++.|.+++|+|++|||||+||++++...+.. ++.|+|||+|..+...+. +
T Consensus 16 ~~~~i~Tg~~~lD~~L~-GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~ 94 (256)
T PF08423_consen 16 RWSRISTGCKSLDELLG-GGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAE 94 (256)
T ss_dssp TS-EE--SSHHHHHHTT-SSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHH
T ss_pred cCCeeCCCCHHHHHhhC-CCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhh
Confidence 56789999999999999 999999999999999999999999999887632 568999999999986543 3
Q ss_pred hcccc----cCcceecCCCCHHHHHHHHHH---HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHH
Q 017792 105 TIGVK----TENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 177 (366)
Q Consensus 105 ~ig~~----~~~~~~~~~~~~e~~l~~~~~---~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L 177 (366)
+.+.+ .+++.+.+..+.+++...+.. .+...++++|||||+++++ +.++.+. ++ ...+.+.+...+..|
T Consensus 95 ~~~~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalf-r~e~~~~-~~--~~~R~~~L~~~~~~L 170 (256)
T PF08423_consen 95 RFGLDPEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALF-RSEFSGR-GD--LAERQRMLARLARIL 170 (256)
T ss_dssp HTTS-HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHH-HHHSGST-TT--HHHHHHHHHHHHHHH
T ss_pred ccccccchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHH-HHHHccc-hh--hHHHHHHHHHHHHHH
Confidence 33433 357778888888887766544 3456689999999999998 5565432 11 123445566666666
Q ss_pred HHHhhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCC
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPF 256 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~ 256 (366)
...+.+++++||++||++...+..+ +.+....|++|..|.|.++.||.|++.+ +.++.+.+.|++..|+
T Consensus 171 ~~lA~~~~iaVvvTNqv~~~~~~~~~~~~~~~~PalG~~w~h~~~~Rl~l~k~~---------~~~R~~~i~ksp~~p~- 240 (256)
T PF08423_consen 171 KRLARKYNIAVVVTNQVTTKIDSNSLFDGDRLKPALGHSWSHAVTTRLFLSKGR---------GSERVATIVKSPSLPE- 240 (256)
T ss_dssp HHHHHHTT-EEEEEEEECSSTT----SSTTSEEETTHHHHHHHSSEEEEEEECS---------TTEEEEEEEECSSSSS-
T ss_pred HHHHHhCCceEEeeceeeecCCcccccccccceecCcchhhhhccEEEEEEeCC---------CCeEEEEEeECCCCCC-
Confidence 6666789999999999998877643 4444578999999999999999998742 2345799999998765
Q ss_pred CeeEEEEEeCCCCCc
Q 017792 257 KTAQFELEFGKGISR 271 (366)
Q Consensus 257 ~~~~~~i~~~~Gi~~ 271 (366)
..+.|.|+ +.||..
T Consensus 241 ~~~~f~It-~~Gi~d 254 (256)
T PF08423_consen 241 GSASFQIT-EDGIRD 254 (256)
T ss_dssp EEEEEEEE-TTEEEE
T ss_pred ceEEEEEe-CCCccC
Confidence 46889998 888754
No 12
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=99.97 E-value=2.1e-29 Score=239.34 Aligned_cols=222 Identities=29% Similarity=0.484 Sum_probs=170.0
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh---cC---CeEEEEeCCCCCCHH----HH
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR---QG---GYCVFIDAEHALDPS----LA 103 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~---~g---g~vl~id~e~~~~~~----~~ 103 (366)
....+++||++.||.+|+ ||+++|++++|+|+||+||||||++++..++. .+ +.|+|+++|+.+.+. ++
T Consensus 73 ~~~~~~~tg~~~lD~ll~-gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia 151 (316)
T TIGR02239 73 QEVIQLTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIA 151 (316)
T ss_pred cccceeCCCCHHHHHHhc-CCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999 99999999999999999999999999986542 22 479999999987753 45
Q ss_pred hhccccc----CcceecCCCCHHHHHHHHHH---HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHH
Q 017792 104 ETIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 176 (366)
Q Consensus 104 ~~ig~~~----~~~~~~~~~~~e~~l~~~~~---~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~ 176 (366)
+++++++ +++.+....+.++++..+.. .+...+++++||||+++++ +.++.+. ++. ..+.+.+.+.+..
T Consensus 152 ~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~-r~~~~~~-~~~--~~rq~~l~~~~~~ 227 (316)
T TIGR02239 152 ERYGLNPEDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALY-RTDFSGR-GEL--SARQMHLARFLRS 227 (316)
T ss_pred HHcCCChHHhhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHHHh-hhhcCCc-chH--HHHHHHHHHHHHH
Confidence 5667665 34566666677776555443 3556689999999999997 4454432 221 1222345667777
Q ss_pred HHHHhhhcCcEEEEEecCCccccccc--CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFG--FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAP 254 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~--~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~ 254 (366)
|.+.+++++++||++||++...+..+ |.+....|+||..|+|+++.||.|++.+ +..+.++++||++.|
T Consensus 228 L~~la~~~~vavv~tNqv~~~~~~~~~~~~g~~~~p~gG~~~~h~~~~ri~l~k~~---------~~~R~~~v~ksp~~p 298 (316)
T TIGR02239 228 LQRLADEFGVAVVITNQVVAQVDGAGSMFAGDPKKPIGGNIMAHASTTRLSLRKGR---------GEQRICKIYDSPCLP 298 (316)
T ss_pred HHHHHHHhCCEEEEECceEEecCCccccccCCCCcCCchHHHHhhccEEEEEEecC---------CCeEEEEEEECCCCC
Confidence 77777889999999999998776431 4344478999999999999999999753 233479999999988
Q ss_pred CCCeeEEEEEeCCCCCc
Q 017792 255 PFKTAQFELEFGKGISR 271 (366)
Q Consensus 255 ~~~~~~~~i~~~~Gi~~ 271 (366)
+.. +.|.|+ +.||..
T Consensus 299 ~~~-~~f~i~-~~Gi~~ 313 (316)
T TIGR02239 299 ESE-AMFAIY-EDGIGD 313 (316)
T ss_pred CeE-EEEEEe-CCceec
Confidence 854 899998 888864
No 13
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3e-29 Score=236.93 Aligned_cols=226 Identities=27% Similarity=0.425 Sum_probs=193.2
Q ss_pred CCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccc
Q 017792 32 TPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVK 109 (366)
Q Consensus 32 ~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~ 109 (366)
......+++||+.+||++|| ||+-+|++++|.|.||.|||||++|++..+...+ +|+|+++|++..+ .+++++|..
T Consensus 68 ~~~~~~Ri~tg~~EldRVLG-GG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~ 145 (456)
T COG1066 68 ELEEEPRISTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLP 145 (456)
T ss_pred eeeecccccCChHHHHhhhc-CCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCC
Confidence 45668899999999999999 9999999999999999999999999999999877 8999999999885 678899998
Q ss_pred cCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEE
Q 017792 110 TENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILI 189 (366)
Q Consensus 110 ~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI 189 (366)
.+++++......++++..+.. .+++++||||++.++ ..++++.+|.. .|.|..+..|.+++ +..|++++
T Consensus 146 ~~~l~l~aEt~~e~I~~~l~~----~~p~lvVIDSIQT~~-s~~~~SapGsV---sQVRe~t~~L~~~A---K~~~i~~f 214 (456)
T COG1066 146 TNNLYLLAETNLEDIIAELEQ----EKPDLVVIDSIQTLY-SEEITSAPGSV---SQVREVAAELMRLA---KTKNIAIF 214 (456)
T ss_pred ccceEEehhcCHHHHHHHHHh----cCCCEEEEeccceee-cccccCCCCcH---HHHHHHHHHHHHHH---HHcCCeEE
Confidence 899999988888888887765 589999999999999 67888888875 68999998888887 56899999
Q ss_pred EEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCC
Q 017792 190 FINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKG 268 (366)
Q Consensus 190 ~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~G 268 (366)
++.|++++ + .++| +.++|..|.++.+. |+.....| .++.+||||++......|.+. +.|
T Consensus 215 iVGHVTKe----G~IAGP-------rvLEHmVDtVlyFE-------Gd~~~~~R-iLR~vKNRFG~t~EiGvFeM~-~~G 274 (456)
T COG1066 215 IVGHVTKE----GAIAGP-------RVLEHMVDTVLYFE-------GDRHSRYR-ILRSVKNRFGATNELGVFEMT-ENG 274 (456)
T ss_pred EEEEEccc----ccccCc-------hheeeeeeEEEEEe-------ccCCCcee-eeehhcccCCcccceeEEEEe-cCC
Confidence 99999987 3 4444 55999999998775 34334455 799999999999999999999 999
Q ss_pred CCchhhHHHHHHhcCcccccce
Q 017792 269 ISRESEIIDLALKHKFASKAGA 290 (366)
Q Consensus 269 i~~~~~i~~~~~~~~~i~~~g~ 290 (366)
+....++..+-....--...|+
T Consensus 275 L~eV~npS~lFL~er~~~~~GS 296 (456)
T COG1066 275 LREVSNPSALFLSERGEQTPGS 296 (456)
T ss_pred eeEecCcHHhHhhcCCCCCCCc
Confidence 9998888877666554444455
No 14
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=99.96 E-value=1.2e-28 Score=224.35 Aligned_cols=213 Identities=26% Similarity=0.453 Sum_probs=160.5
Q ss_pred CcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhccc-----ccC
Q 017792 37 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGV-----KTE 111 (366)
Q Consensus 37 ~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~-----~~~ 111 (366)
+++|||+++||.+|+ ||+|+|++++|+|+||+|||+||++++......++.|+|+++| .+...+..++.- ..+
T Consensus 3 ~~i~tGi~~lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e-~~~~~r~~~~~~~~~~~~~~ 80 (225)
T PRK09361 3 ERLPTGCKMLDELLG-GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPERFKQIAGEDFEELLS 80 (225)
T ss_pred ccccCCcHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC-CCCHHHHHHHHhhChHhHhh
Confidence 379999999999999 9999999999999999999999999999998888999999999 555433333221 235
Q ss_pred cceecCCCCHHHHHHHHHH---HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEE
Q 017792 112 NLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTIL 188 (366)
Q Consensus 112 ~~~~~~~~~~e~~l~~~~~---~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tV 188 (366)
++.+.++.+.++....+.. ++. .+++++||||+++++. .++.+.... ..+.+.+.+.+..|.+.++++|++|
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~lvVIDsi~al~~-~~~~~~~~~---~~~~~~l~~~l~~L~~~a~~~~v~v 155 (225)
T PRK09361 81 NIIIFEPSSFEEQSEAIRKAEKLAK-ENVGLIVLDSATSLYR-LELEDEEDN---SKLNRELGRQLTHLLKLARKHDLAV 155 (225)
T ss_pred CeEEEeCCCHHHHHHHHHHHHHHHH-hcccEEEEeCcHHHhH-HHhcCCccH---HHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 6777777777665544443 333 6799999999999873 332221111 1234556666777777778999999
Q ss_pred EEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCC
Q 017792 189 IFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKG 268 (366)
Q Consensus 189 I~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~G 268 (366)
|++||.....+. ....+.||..++|+||.+|.|++. . +..+.+.+.|+|..+++..+.|.|+ +.|
T Consensus 156 i~tnq~~~~~~~-----~~~~~~gg~~~~~~~d~ii~l~~~----~-----~~~r~~~i~k~~~~~~~~~~~f~It-~~G 220 (225)
T PRK09361 156 VITNQVYSDIDS-----DGLRPLGGHTLEHWSKTILRLEKF----R-----NGKRRATLEKHRSRPEGESAEFRIT-DRG 220 (225)
T ss_pred EEEccceecCCC-----CcccCCCcchhhhhccEEEEEEEc----c-----CCeEEEEEEECCCCCCCCeEEEEEe-CCc
Confidence 999998876432 124567888999999999999872 1 2233677899998888888999999 888
Q ss_pred CCc
Q 017792 269 ISR 271 (366)
Q Consensus 269 i~~ 271 (366)
|..
T Consensus 221 i~~ 223 (225)
T PRK09361 221 IEI 223 (225)
T ss_pred Eec
Confidence 753
No 15
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.96 E-value=3e-28 Score=221.66 Aligned_cols=206 Identities=45% Similarity=0.639 Sum_probs=159.7
Q ss_pred ccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC------CeEEEEeCCCCCCHHHHh----hccc
Q 017792 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG------GYCVFIDAEHALDPSLAE----TIGV 108 (366)
Q Consensus 39 i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g------g~vl~id~e~~~~~~~~~----~ig~ 108 (366)
++||++.||.+|+ ||+++|++++|+|+||+|||+|+++++......+ +.|+|+++|..++..+.. ..+.
T Consensus 1 i~tG~~~lD~~l~-GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~ 79 (226)
T cd01393 1 ISTGSKALDELLG-GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGL 79 (226)
T ss_pred CCCCcHHHHHHhC-CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhcc
Confidence 6899999999999 9999999999999999999999999999887666 789999999987764433 3333
Q ss_pred c----cCcceecCCCCHHHHHHHHHHHHh---cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHh
Q 017792 109 K----TENLLLAQPDCGEQALSLVDTLIR---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 181 (366)
Q Consensus 109 ~----~~~~~~~~~~~~e~~l~~~~~~~~---~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l 181 (366)
. .+++.+..+.+.++++..+..+.. ...++++||||++.++. ..+.+. .....+++.+.+.++.|.+.+
T Consensus 80 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~-~~~~~~---~~~~~~~~~l~~~~~~L~~~a 155 (226)
T cd01393 80 DPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFR-KEFIGR---GMLAERARLLSQALRKLLRLA 155 (226)
T ss_pred chhhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhh-hhhcCC---chHHHHHHHHHHHHHHHHHHH
Confidence 2 467788888888988888777654 67899999999999874 322221 112234455667777777777
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCC
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFK 257 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~ 257 (366)
++++++||++||.+..++. +.+....+.+|..|+|.+|.||.|.+... . .+.++.+.++|+++.|+++
T Consensus 156 ~~~~~~vi~tnq~~~~~~~--~~~~~~~p~~G~~~~~~~~~ri~l~~~~~----~--~~~~r~~~~~k~~~~~~~~ 223 (226)
T cd01393 156 DKFNVAVVFTNQVRAKVDV--MFGDPETPAGGNALAHASTTRLDLRKGRG----I--IGERRIAKVVKSPALPEAE 223 (226)
T ss_pred HHhCcEEEEEEEEeeeccc--ccCCCccccCchhhhCcccEEEEEEecCC----c--cCcEEEEEEEeCCCCCCcc
Confidence 8899999999999887653 21223578899999999999999997541 1 2345579999999877753
No 16
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=99.96 E-value=5.6e-28 Score=218.85 Aligned_cols=211 Identities=26% Similarity=0.424 Sum_probs=156.0
Q ss_pred ccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhccc----ccCcce
Q 017792 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGV----KTENLL 114 (366)
Q Consensus 39 i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~----~~~~~~ 114 (366)
+|||+++||.+|+ ||+++|++++|+|+||||||||+++++......++.|+|+++|..++..+.+..+. ...++.
T Consensus 1 i~TGi~~LD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~ 79 (218)
T cd01394 1 LPTGCKGLDELLG-GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSII 79 (218)
T ss_pred CCcchhHHHHHhc-CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEE
Confidence 6899999999999 99999999999999999999999999999988889999999998776433222221 234666
Q ss_pred ecCCCCHHHHHHHH---HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEE
Q 017792 115 LAQPDCGEQALSLV---DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFI 191 (366)
Q Consensus 115 ~~~~~~~e~~l~~~---~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i 191 (366)
+.++.+..++...+ ...+. ..++++||||+++++ ..+..+... .....+.+.+.+..|...+++++++||++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~lvvIDsi~~l~-~~~~~~~~~---~~~~~~~l~~~~~~L~~~a~~~~~~vi~t 154 (218)
T cd01394 80 VFEPMDFNEQGRAIQETETFAD-EKVDLVVVDSATALY-RLELGDDDT---TIKNYRELAKQLTFLLWLARKHDVAVVIT 154 (218)
T ss_pred EEeCCCHHHHHHHHHHHHHHHh-cCCcEEEEechHHhh-hHHhcCccc---hHHHHHHHHHHHHHHHHHHHHhCCEEEEe
Confidence 76776665554433 33333 348999999999986 333332111 12344456666677777778899999999
Q ss_pred ecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCC
Q 017792 192 NQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGIS 270 (366)
Q Consensus 192 ~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~ 270 (366)
||.+...+. ....+.||+.|+|++|.+|.|++.+ + +.+ ...+.|+|..++...+.|.|+ +.||.
T Consensus 155 ~q~~~~~~~-----~~~~p~~g~~~~~~~d~~i~l~~~~----~----~~r-~~~~~~~~~~~~~~~~~f~It-~~Gi~ 218 (218)
T cd01394 155 NQVYSDVGS-----GSVRPLGGHTLEHWSKVILRLEKLR----V----GTR-RAVLEKHRFRPEGSSVYFRIT-DKGIE 218 (218)
T ss_pred cCCEEcCCC-----CcccccCCcchhcceeEEEEEEEcC----C----CeE-EEEEeeCCCCCCCceEEEEEe-CCccC
Confidence 999866432 2245788999999999999999753 1 233 344778888888778899999 88863
No 17
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=99.96 E-value=5.9e-28 Score=230.13 Aligned_cols=219 Identities=28% Similarity=0.477 Sum_probs=166.1
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEeCCCCCCHH----HH
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPS----LA 103 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~------~gg~vl~id~e~~~~~~----~~ 103 (366)
....+++||++.||.+|+ ||+|.|++++|+|+|||||||||++++..++. .++.|+||++|+.+++. ++
T Consensus 72 ~s~~~~~Tg~~~lD~~l~-GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~ 150 (310)
T TIGR02236 72 KTIGKITTGSKELDELLG-GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMA 150 (310)
T ss_pred ccCCeecCCCHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHH
Confidence 567789999999999999 99999999999999999999999999988764 24589999999988753 34
Q ss_pred hhccccc----CcceecCCCCHHHHH---HHHHHHHhcC--CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHH
Q 017792 104 ETIGVKT----ENLLLAQPDCGEQAL---SLVDTLIRSG--SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQAL 174 (366)
Q Consensus 104 ~~ig~~~----~~~~~~~~~~~e~~l---~~~~~~~~~~--~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L 174 (366)
+.+|+++ +++.+......++.+ +.+..++... .++++||||+++++ +.++.+. ++ ...+.+.+.+.+
T Consensus 151 ~~~gl~~~~~~~~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~-r~e~~~~-~~--~~~r~~~l~~~~ 226 (310)
T TIGR02236 151 EARGLDPDEVLKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHF-RAEYVGR-GA--LAERQQKLNKHL 226 (310)
T ss_pred HHcCCCHHHHhhceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhh-hHhhcCc-hh--HHHHHHHHHHHH
Confidence 4556653 566677666555433 3334444443 37899999999987 4555432 11 122334566667
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCC
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAP 254 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~ 254 (366)
..|...+++++++||+|||++.+.+. .++++ ..++||..|+|+++.||.|++.. +..+.+++.||++.|
T Consensus 227 ~~L~~~a~~~~~~v~~tnqv~~~~~~-~~~~~-~~~~~G~~~~h~~~~rl~l~~~~---------~~~R~~~~~k~~~~~ 295 (310)
T TIGR02236 227 HDLLRLADLYNAAVVVTNQVMARPDA-FFGDP-TRPIGGHILGHAATFRVYLRKGK---------GDKRIARLVDSPHLP 295 (310)
T ss_pred HHHHHHHHHhCcEEEEeceeeecCcc-ccCcc-ccCCcchhhhhheeEEEEEEecC---------CCeEEEEEEECCCCC
Confidence 77777778999999999999987653 24444 68999999999999999999742 223479999999988
Q ss_pred CCCeeEEEEEeCCCCC
Q 017792 255 PFKTAQFELEFGKGIS 270 (366)
Q Consensus 255 ~~~~~~~~i~~~~Gi~ 270 (366)
+.. +.|.|. +.||.
T Consensus 296 ~~~-~~f~i~-~~Gi~ 309 (310)
T TIGR02236 296 EGE-AVFRIT-EKGIE 309 (310)
T ss_pred Cee-EEEEEe-CCCcc
Confidence 865 479998 78874
No 18
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=99.96 E-value=2e-27 Score=226.98 Aligned_cols=219 Identities=28% Similarity=0.469 Sum_probs=165.7
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEeCCCCCCHH----HH
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPS----LA 103 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~------gg~vl~id~e~~~~~~----~~ 103 (366)
+...+++||++.||.+|+ ||+|+|.+++|+|+||||||+||++++..++.. ++.++|+++|+.++.. ++
T Consensus 79 ks~~~~~Tg~~~lD~~l~-GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~ 157 (317)
T PRK04301 79 KNVGKITTGSKELDELLG-GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMA 157 (317)
T ss_pred ccCCccCCCCHHHHHHhc-CCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHH
Confidence 557789999999999999 999999999999999999999999999887643 3589999999988753 45
Q ss_pred hhccccc----CcceecCCCCHHHH---HHHHHHHHhc-CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHH
Q 017792 104 ETIGVKT----ENLLLAQPDCGEQA---LSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALR 175 (366)
Q Consensus 104 ~~ig~~~----~~~~~~~~~~~e~~---l~~~~~~~~~-~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~ 175 (366)
+++|+++ +++.+.++.+.++. +..+..++.. ..++++||||+++++ +.++.+. ++. ..+.+.+.+.+.
T Consensus 158 ~~~g~~~~~~l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~-~~~~~~~-~~~--~~r~~~l~~~~~ 233 (317)
T PRK04301 158 EALGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHF-RAEYVGR-GNL--AERQQKLNKHLH 233 (317)
T ss_pred HHcCCChHhhhccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchHHh-hhhccCC-ccH--HHHHHHHHHHHH
Confidence 5677765 35566666555544 3344455555 678999999999987 4444432 111 112333556666
Q ss_pred HHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC
Q 017792 176 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 255 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~ 255 (366)
.|.+.+++++++||++||++...+. .+ ++...++||..|.|++++||.|.+.. +..+.++++|+++.|+
T Consensus 234 ~L~~la~~~~vavl~tnqv~~~~~~-~~-~~~~~~~~G~~~~~~~~~rl~l~k~~---------~~~R~~~v~k~~~~~~ 302 (317)
T PRK04301 234 DLLRLADLYNAAVVVTNQVMARPDA-FF-GDPTQPIGGHILGHTATFRIYLRKSK---------GNKRIARLVDSPHLPE 302 (317)
T ss_pred HHHHHHHHhCCEEEEeceEEecccc-cc-CccccCCcchHhHhheeEEEEEEecC---------CCceEEEEEeCCCCCC
Confidence 7777778899999999999877543 14 34478999999999999999999742 1234799999999887
Q ss_pred CCeeEEEEEeCCCCC
Q 017792 256 FKTAQFELEFGKGIS 270 (366)
Q Consensus 256 ~~~~~~~i~~~~Gi~ 270 (366)
+ .+.|.|. +.||.
T Consensus 303 ~-~~~f~I~-~~Gi~ 315 (317)
T PRK04301 303 G-EAVFRIT-EEGIR 315 (317)
T ss_pred c-eEEEEEe-CCccc
Confidence 5 5689998 78874
No 19
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.96 E-value=2.5e-27 Score=229.19 Aligned_cols=224 Identities=25% Similarity=0.344 Sum_probs=173.2
Q ss_pred ceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--
Q 017792 23 SIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-- 100 (366)
Q Consensus 23 ~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~-- 100 (366)
.+..+.+- .....++++||+++||++|| ||+++|+++.|.|+||+|||||+++++..+.+.+++++|+++|++.++
T Consensus 49 ~~~~~~~~-~~~~~~ri~TGi~eLD~vLg-GGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 49 KVIPLSDI-EAEEEERIPTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred CceEhhhc-cccccCccccCCHHHHHhhc-CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 34555542 45567899999999999999 999999999999999999999999999999888889999999987764
Q ss_pred HHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHH
Q 017792 101 SLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180 (366)
Q Consensus 101 ~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~ 180 (366)
.+++++|++.+++.+......++++..+. ..+++++||||++.++ ..++++.+|.. .+.|.++..|.+ .
T Consensus 127 ~Ra~rlg~~~~~l~l~~e~~le~I~~~i~----~~~~~lVVIDSIq~l~-~~~~~~~~g~~---~qvr~~~~~L~~---l 195 (372)
T cd01121 127 LRADRLGISTENLYLLAETNLEDILASIE----ELKPDLVIIDSIQTVY-SSELTSAPGSV---SQVRECTAELMR---F 195 (372)
T ss_pred HHHHHcCCCcccEEEEccCcHHHHHHHHH----hcCCcEEEEcchHHhh-ccccccCCCCH---HHHHHHHHHHHH---H
Confidence 45678999889988887777777766553 4579999999999987 34444434433 345555444444 4
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeE
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQ 260 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~ 260 (366)
++++++++|+++|.+++- ...|.+.++|++|.+|.+.... .. ..+.++++|||+++......
T Consensus 196 ak~~~itvilvghvtk~g----------~~aG~~~leh~vD~Vi~le~~~-------~~-~~R~Lri~KnR~g~~~ei~~ 257 (372)
T cd01121 196 AKERNIPIFIVGHVTKEG----------SIAGPKVLEHMVDTVLYFEGDR-------HS-EYRILRSVKNRFGSTNELGV 257 (372)
T ss_pred HHHcCCeEEEEeeccCCC----------cccCcccchhhceEEEEEEcCC-------CC-cEEEEEEEeCCCCCCCCEEE
Confidence 467899999999988751 1234456999999999887532 11 23379999999998888899
Q ss_pred EEEEeCCCCCchhhHHHH
Q 017792 261 FELEFGKGISRESEIIDL 278 (366)
Q Consensus 261 ~~i~~~~Gi~~~~~i~~~ 278 (366)
|+|. +.|+....++...
T Consensus 258 F~i~-~~Gl~~v~~ps~~ 274 (372)
T cd01121 258 FEMR-ENGLREVSNPSEL 274 (372)
T ss_pred EEEC-CCCeEEccChhhh
Confidence 9999 9999876665544
No 20
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.96 E-value=3.6e-27 Score=234.12 Aligned_cols=225 Identities=20% Similarity=0.273 Sum_probs=173.4
Q ss_pred eEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--H
Q 017792 24 IMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--S 101 (366)
Q Consensus 24 ~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~ 101 (366)
+..+.+- ......+++||+++||++|| ||+++|++++|.|+||+|||||+++++..+.+.+++|+|+++|++..+ .
T Consensus 62 ~~~~~~~-~~~~~~ri~TGi~~LD~vLg-GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ 139 (454)
T TIGR00416 62 SQTISAI-ELEEVPRFSSGFGELDRVLG-GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKM 139 (454)
T ss_pred ceEhhhc-cccccCccccCcHHHHHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHH
Confidence 4455542 44567899999999999999 999999999999999999999999999999888889999999988764 3
Q ss_pred HHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHh
Q 017792 102 LAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 181 (366)
Q Consensus 102 ~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l 181 (366)
+++++|++.+++.+....+.+++...+. ..+++++||||++.+. ..++.+.+|.. .+.|.+...|.+ .+
T Consensus 140 ra~rlg~~~~~l~~~~e~~~~~I~~~i~----~~~~~~vVIDSIq~l~-~~~~~~~~g~~---~q~r~~~~~L~~---~a 208 (454)
T TIGR00416 140 RAIRLGLPEPNLYVLSETNWEQICANIE----EENPQACVIDSIQTLY-SPDISSAPGSV---SQVRECTAELMR---LA 208 (454)
T ss_pred HHHHcCCChHHeEEcCCCCHHHHHHHHH----hcCCcEEEEecchhhc-ccccccCCCCH---HHHHHHHHHHHH---HH
Confidence 4678999989998888777776665553 4578999999999987 34454444443 345555444444 44
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEE
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQF 261 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~ 261 (366)
++.|+|+++++|.+++- ..+|...++|++|.+|.|+... . ...+.++++|+|+++......|
T Consensus 209 k~~giTvllt~hvtkeg----------~~aG~~~le~lvD~VI~Le~~~----~----~~~R~L~v~K~R~g~~~e~~~f 270 (454)
T TIGR00416 209 KTRGIAIFIVGHVTKEG----------SIAGPKVLEHMVDTVLYFEGDR----D----SRFRILRSVKNRFGATNEIGIF 270 (454)
T ss_pred HHhCCEEEEEeccccCC----------ccCCcccEeeeceEEEEEeccC----C----CcEEEEEEecCCCCCCCcEEEE
Confidence 67899999999987641 1233345999999999998632 1 2334799999999988888999
Q ss_pred EEEeCCCCCchhhHHHHHH
Q 017792 262 ELEFGKGISRESEIIDLAL 280 (366)
Q Consensus 262 ~i~~~~Gi~~~~~i~~~~~ 280 (366)
+|+ +.|+....++..+-.
T Consensus 271 ~it-~~Gl~~v~~ps~~f~ 288 (454)
T TIGR00416 271 EMT-EQGLREVLNPSAIFL 288 (454)
T ss_pred EEe-cCCceecCChhHhhh
Confidence 999 999976666555444
No 21
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=99.95 E-value=3.4e-27 Score=215.94 Aligned_cols=216 Identities=32% Similarity=0.532 Sum_probs=158.3
Q ss_pred ccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEeCCCCCCHH----HHhhccc
Q 017792 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPS----LAETIGV 108 (366)
Q Consensus 39 i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~------gg~vl~id~e~~~~~~----~~~~ig~ 108 (366)
+|||++.||.+|+ ||+++|++++|+|+||||||+|+++++...... ++.|+|+++|+.+... .++..++
T Consensus 1 ~~tG~~~lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~ 79 (235)
T cd01123 1 LTTGSKALDELLG-GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGL 79 (235)
T ss_pred CCCCchhhHhhcc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhcc
Confidence 6899999999999 999999999999999999999999999876543 3689999999987643 2334444
Q ss_pred c----cCcceecCCCCHHHHHHH---HHHHHhcC-CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHH
Q 017792 109 K----TENLLLAQPDCGEQALSL---VDTLIRSG-SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180 (366)
Q Consensus 109 ~----~~~~~~~~~~~~e~~l~~---~~~~~~~~-~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~ 180 (366)
+ .+++.+..+.+.+++... +...+... +++++||||+++++ ...+.+. + .....++.+.+.+..|...
T Consensus 80 ~~~~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~-~~~~~~~-~--~~~~r~~~l~~~~~~L~~l 155 (235)
T cd01123 80 DPEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALF-RAEFDGR-G--ELAERQQHLAKLLRTLKRL 155 (235)
T ss_pred ChHhHhcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHH-HHHhcCC-c--cHHHHHHHHHHHHHHHHHH
Confidence 3 346677777776666544 34445555 89999999999986 2333221 1 1122334455666666666
Q ss_pred hhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCee
Q 017792 181 LSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTA 259 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~ 259 (366)
+++++++||++||.+...+... +.+....+++|..|.+.++.|+.+.+.. +..+.+.++|++..+ ....
T Consensus 156 a~~~~~avl~tn~~~~~~~~~~~~~~~~~~p~lG~~w~~~v~~Rl~l~~~~---------~~~r~~~i~k~~~~~-~~~~ 225 (235)
T cd01123 156 ADEFNVAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGR---------GEERIAKIVDSPHLP-EGEA 225 (235)
T ss_pred HHHhCCEEEEeccEeecCCcccccCCCCeeccCccHhhCCceEEEEEEECC---------CCceEEEEeeCCCCC-CceE
Confidence 6789999999999987654311 1223356889999999999999998753 123479999998877 4578
Q ss_pred EEEEEeCCCCC
Q 017792 260 QFELEFGKGIS 270 (366)
Q Consensus 260 ~~~i~~~~Gi~ 270 (366)
.|.|+ +.||.
T Consensus 226 ~f~It-~~Gi~ 235 (235)
T cd01123 226 VFAIT-EEGIR 235 (235)
T ss_pred EEEEe-CCccC
Confidence 99998 78863
No 22
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.95 E-value=1.8e-26 Score=228.94 Aligned_cols=226 Identities=26% Similarity=0.350 Sum_probs=173.0
Q ss_pred eEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--H
Q 017792 24 IMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--S 101 (366)
Q Consensus 24 ~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~ 101 (366)
+..+.+. ......+++||+++||++|| ||+++|++++|.|+||+|||||+++++..+...+++|+|+++|++.++ .
T Consensus 48 ~~~~~~~-~~~~~~ri~TGi~~LD~~Lg-GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ 125 (446)
T PRK11823 48 VQPLSDI-EAEEEPRISTGIGELDRVLG-GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKL 125 (446)
T ss_pred ceehhhc-ccccCCcccCCcHHHHHHhc-CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHH
Confidence 3445442 45567899999999999999 999999999999999999999999999998877889999999988774 4
Q ss_pred HHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHh
Q 017792 102 LAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 181 (366)
Q Consensus 102 ~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l 181 (366)
+++++|++.+++.+......++++..+. ..+++++||||++.++ ..++++.++.. .+.|.++..| .+.+
T Consensus 126 ra~rlg~~~~~l~~~~e~~l~~i~~~i~----~~~~~lVVIDSIq~l~-~~~~~~~~g~~---~qvr~~~~~L---~~~a 194 (446)
T PRK11823 126 RAERLGLPSDNLYLLAETNLEAILATIE----EEKPDLVVIDSIQTMY-SPELESAPGSV---SQVRECAAEL---MRLA 194 (446)
T ss_pred HHHHcCCChhcEEEeCCCCHHHHHHHHH----hhCCCEEEEechhhhc-cccccCCCCCH---HHHHHHHHHH---HHHH
Confidence 5778999888888877777776666553 4578999999999987 34555444443 3445444444 4445
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEE
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQF 261 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~ 261 (366)
+++|+++|+++|.+.+- ...|...++|++|.++.+.... + ...+.++++|||+++......|
T Consensus 195 k~~~itvilv~hvtk~~----------~~ag~~~lehlvD~Vi~le~~~----~----~~~R~l~i~K~R~g~~~e~~~f 256 (446)
T PRK11823 195 KQRGIAVFLVGHVTKEG----------AIAGPRVLEHMVDTVLYFEGDR----H----SRYRILRAVKNRFGATNEIGVF 256 (446)
T ss_pred HHcCCEEEEEeeccCCC----------CcCCcchhhhhCeEEEEEEcCC----C----CceEEEEEccCCCCCCCceEEE
Confidence 67899999999987641 1233456999999999886311 1 2344799999999998888899
Q ss_pred EEEeCCCCCchhhHHHHHHh
Q 017792 262 ELEFGKGISRESEIIDLALK 281 (366)
Q Consensus 262 ~i~~~~Gi~~~~~i~~~~~~ 281 (366)
+|+ +.|+....++...-..
T Consensus 257 ~it-~~Gi~~v~~ps~~~~~ 275 (446)
T PRK11823 257 EMT-EQGLREVSNPSELFLS 275 (446)
T ss_pred EEc-CCCceECCCHHHHHhc
Confidence 999 9999876666554443
No 23
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=99.94 E-value=1e-25 Score=202.63 Aligned_cols=200 Identities=28% Similarity=0.434 Sum_probs=149.2
Q ss_pred HHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhc-----ccccCcceecCCCC
Q 017792 46 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETI-----GVKTENLLLAQPDC 120 (366)
Q Consensus 46 LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~i-----g~~~~~~~~~~~~~ 120 (366)
||.+|+ ||+|+|++++|+|+||||||+|+++++......++.|+|+++|+ +.+.+..++ ....+++.+.++.+
T Consensus 1 lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~~ 78 (209)
T TIGR02237 1 IDELLG-GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVFD 78 (209)
T ss_pred Chhhhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECCC
Confidence 799999 99999999999999999999999999999888888999999997 554332222 22346777777776
Q ss_pred HHHH---HHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcc
Q 017792 121 GEQA---LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 121 ~e~~---l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
..+. +..+...+....++++||||+++++ +.+..+... ...+.+...+..|.+.++++++++|++||.+..
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~-~~~~~~~~~-----~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~ 152 (209)
T TIGR02237 79 FDEQGVAIQKTSKFIDRDSASLVVVDSFTALY-RLELSDDRI-----SRNRELARQLTLLLSLARKKNLAVVITNQVYTD 152 (209)
T ss_pred HHHHHHHHHHHHHHHhhcCccEEEEeCcHHHh-HHHhCCccH-----HHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEe
Confidence 6665 4444455556679999999999987 333332211 223344555666666668899999999998765
Q ss_pred cccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCC
Q 017792 198 LSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGI 269 (366)
Q Consensus 198 ~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi 269 (366)
.+. ....+.||..++|++|.++.|++. . +.+ .+.+.|++..++...+.|.|+ +.||
T Consensus 153 ~~~-----~~~~~~gg~~~~~~~d~vi~l~~~----~-----~~r-~~~i~k~~~~~~~~~~~f~It-~~Gi 208 (209)
T TIGR02237 153 VNN-----GTLRPLGGHLLEHWSKVILRLEKF----R-----GRR-LATLEKHRSRPEGESVYFRIT-DDGI 208 (209)
T ss_pred cCC-----CCCcCCCcchhheeeeEEEEEEec----C-----CEE-EEEEEECCCCCCCCeEEEEEe-CCcc
Confidence 332 224577888999999999999864 1 233 566888888888788999999 7886
No 24
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.94 E-value=3.9e-25 Score=205.18 Aligned_cols=216 Identities=20% Similarity=0.284 Sum_probs=154.2
Q ss_pred cccCChHHHHHhh--------------CCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH---
Q 017792 38 VVSTGSFALDIAL--------------GTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--- 100 (366)
Q Consensus 38 ~i~TG~~~LD~~L--------------~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--- 100 (366)
++|||+++||.+| + ||+|+|++++|+|+||+||||||++++......+.+|+|++.|+..+.
T Consensus 3 ~~~tGi~glD~~l~~~~~~~~~~~~~~~-GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~ 81 (259)
T TIGR03878 3 GVPTGVEGLDELFFKVEIEEGKIVRKPL-GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYT 81 (259)
T ss_pred CccCCchhHHHhhccccccccccccccC-CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHH
Confidence 6899999999999 6 999999999999999999999999999988878889999999975542
Q ss_pred ---HHHhhcccccC----cceecCCC-------CHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHH
Q 017792 101 ---SLAETIGVKTE----NLLLAQPD-------CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQ 166 (366)
Q Consensus 101 ---~~~~~ig~~~~----~~~~~~~~-------~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ 166 (366)
..+..+|++.+ ++.+..+. +.++++..+...+...+++++||||++++.... + ..
T Consensus 82 ~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~-------~----~~ 150 (259)
T TIGR03878 82 SLKERAKAMGVDFDKIEENIILIDAASSTELRENVPNLLATLAYAIKEYKVKNTVIDSITGLYEAK-------E----MM 150 (259)
T ss_pred HHHHHHHHcCCCHHHHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhcccc-------h----HH
Confidence 12456777643 45554443 345667777777778889999999999876210 1 12
Q ss_pred HHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec-C-----ccccc
Q 017792 167 ARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK-G-----EETIG 240 (366)
Q Consensus 167 ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~-~-----~~~~g 240 (366)
+| +.++.|...+++.++|+++++|....... .. ..+.++..+.|.+|.+|.|+....... . .....
T Consensus 151 ~r---~~~~~L~~~lk~~~~t~ll~~e~~~~~~~--~~---~~~~~~~~~~~l~D~vI~L~~~~~~~~~~~~~~~~~~~~ 222 (259)
T TIGR03878 151 AR---EIVRQLFNFMKKWYQTALFVSQKRSGHEE--LS---AEAAGGYAVSHIVDGTIVLAKQLIMSRFDASLYKKPIGE 222 (259)
T ss_pred HH---HHHHHHHHHHHHcCCeEEEEeccccCccc--cc---ccccCCcceeEeeccEEEEeeeeccchhhhhhccccccc
Confidence 23 45566667778899999999997652110 11 123455569999999999985421100 0 00112
Q ss_pred cEEEEEEEecCCCCCC-CeeEEEEEeCCCCCchhh
Q 017792 241 SQIAVKIVKNKLAPPF-KTAQFELEFGKGISRESE 274 (366)
Q Consensus 241 ~~~~l~v~K~r~~~~~-~~~~~~i~~~~Gi~~~~~ 274 (366)
.++.+.|.|+|...+. ...+|.|+ +.||....+
T Consensus 223 ~~R~l~I~KmRg~~h~~~~~~~~It-~~Gi~~i~~ 256 (259)
T TIGR03878 223 IVRLFRIDGCRMCGHDTKTHVLEID-ETGLVKIGP 256 (259)
T ss_pred eEEEEEEEEccCCCCCCceeEEEEc-CCceEEecC
Confidence 3457999999976543 56789998 889765544
No 25
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.93 E-value=1.2e-24 Score=199.49 Aligned_cols=202 Identities=21% Similarity=0.254 Sum_probs=149.5
Q ss_pred CcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCc--
Q 017792 37 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN-- 112 (366)
Q Consensus 37 ~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~-- 112 (366)
++++||++.||.+|+ ||+|+|+++.|.|+||||||+|+.+++......|.+|+|++.|++.+. ..++.+|++++.
T Consensus 1 ~ri~tGi~~LD~~l~-GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~ 79 (237)
T TIGR03877 1 KRVKTGIPGMDEILH-GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYE 79 (237)
T ss_pred CccccCcHhHHHHhc-CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHh
Confidence 368999999999999 999999999999999999999999999887777889999999987664 334566765432
Q ss_pred ----ceec-------------------CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHH
Q 017792 113 ----LLLA-------------------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARL 169 (366)
Q Consensus 113 ----~~~~-------------------~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~ 169 (366)
+.+. .+.+.++++..+...+...+.+++||||++.+.. . . . ...|
T Consensus 80 ~~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~-~---~----~---~~~r- 147 (237)
T TIGR03877 80 EEGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYI-T---K----P---AMAR- 147 (237)
T ss_pred hcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhc-C---C----h---HHHH-
Confidence 2211 2345677778787777777899999999998762 1 1 0 1122
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEe
Q 017792 170 MSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVK 249 (366)
Q Consensus 170 l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K 249 (366)
..++.|.+.+++.|+|+|+++|.....+ ..++..++|+||.+|.|+... .+. ..++.+.|.|
T Consensus 148 --~~l~~l~~~lk~~~~t~llt~~~~~~~~----------~~~~~~~~~~~D~vI~L~~~~---~~~---~~~R~l~i~K 209 (237)
T TIGR03877 148 --SIVMQLKRVLSGLGCTSIFVSQVSVGER----------GFGGPGVEHAVDGIIRLDLDE---IDG---ELKRSLIVWK 209 (237)
T ss_pred --HHHHHHHHHHHhCCCEEEEEECcccccc----------cccccceEEEEeEEEEEEEEe---eCC---ceEEEEEEEE
Confidence 3456666666789999999999764211 112234899999999998643 111 2344799999
Q ss_pred cCCCCCC-CeeEEEEEeCCCCC
Q 017792 250 NKLAPPF-KTAQFELEFGKGIS 270 (366)
Q Consensus 250 ~r~~~~~-~~~~~~i~~~~Gi~ 270 (366)
+|..++. ...+|.|+ ++||.
T Consensus 210 ~Rg~~~~~~~~~~~It-~~Gi~ 230 (237)
T TIGR03877 210 MRGTKHSMRRHPFEIT-DKGII 230 (237)
T ss_pred CCCCCCCCceEEEEEc-CCCEE
Confidence 9987665 45789998 88875
No 26
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.93 E-value=3.9e-26 Score=202.50 Aligned_cols=223 Identities=28% Similarity=0.430 Sum_probs=179.7
Q ss_pred CCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEeCCCCCCHHH----
Q 017792 33 PRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPSL---- 102 (366)
Q Consensus 33 ~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~------gg~vl~id~e~~~~~~~---- 102 (366)
.+.+..|+||+..||.+|| |||+.=++++|+|.+|+|||+++.+++...+.+ +|+++|||+|.++.+++
T Consensus 91 r~~v~~ItTgs~~lD~ILG-GGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~I 169 (335)
T KOG1434|consen 91 RKTVGSITTGSSALDDILG-GGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDI 169 (335)
T ss_pred hhccceeecchHHHhhhhc-CCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccchHHHHHH
Confidence 3668899999999999999 999999999999999999999999998877643 56899999999998654
Q ss_pred Hhhccccc----CcceecCCCCHHHHHHHHH---HHHhc-CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHH
Q 017792 103 AETIGVKT----ENLLLAQPDCGEQALSLVD---TLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQAL 174 (366)
Q Consensus 103 ~~~ig~~~----~~~~~~~~~~~e~~l~~~~---~~~~~-~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L 174 (366)
++++.+++ +|+++++..+.++.++.+. ..+++ ++.+++++||+.+++ +..+++. |+.+ .+.|.+.+.+
T Consensus 170 Ae~~~~d~d~~LdNI~y~Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~F-RvDy~gr-geLs--eRqqkLn~ml 245 (335)
T KOG1434|consen 170 AERFKVDPDFTLDNILYFRAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALF-RVDYDGR-GELS--ERQQKLNQML 245 (335)
T ss_pred HHHhCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhcCcEEEEEEeceehhe-eeccccc-ccHH--HHHHHHHHHH
Confidence 55566654 5788888888887776654 34444 589999999999999 7788764 3332 4557788888
Q ss_pred HHHHHHhhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCC
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLA 253 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~ 253 (366)
.+|.+...+++.+|+++||+..+.+..+ |......|.||..|.|.|..|+.|++++ |..+..++.|+.-
T Consensus 246 ~kl~~laeefnvAVfltNQvttdpga~~~f~s~~~kp~gGh~~aHAsttRlilrkgr---------g~eR~Akl~dSP~- 315 (335)
T KOG1434|consen 246 QKLNKLAEEFNVAVFLTNQVTTDPGAGMTFASQDLKPAGGHSWAHASTTRLILRKGR---------GDERVAKLYDSPS- 315 (335)
T ss_pred HHHHHHHHhccEEEEEecceecCCcccccccccccCccccchhhhhhheeEEEEcCC---------cceeeeecccCCC-
Confidence 8888888999999999999999988644 5554478999999999999999999864 3444677777763
Q ss_pred CCCCeeEEEEEeCCCCCc
Q 017792 254 PPFKTAQFELEFGKGISR 271 (366)
Q Consensus 254 ~~~~~~~~~i~~~~Gi~~ 271 (366)
.|...+.|.|. ..||..
T Consensus 316 mpe~e~~y~It-~~Gi~d 332 (335)
T KOG1434|consen 316 MPEAEASYVIT-PGGIRD 332 (335)
T ss_pred CCcceEEEEEc-CCcccc
Confidence 44467888888 778753
No 27
>PRK04328 hypothetical protein; Provisional
Probab=99.93 E-value=1.6e-24 Score=199.96 Aligned_cols=204 Identities=23% Similarity=0.286 Sum_probs=151.7
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCc-
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN- 112 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~- 112 (366)
+++++||++.||.+|+ ||+|+|+++.|.|+||+|||+|+.+++......|..++|+++|+..+. ..++++|++++.
T Consensus 2 ~~rv~tGi~~LD~lL~-GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~ 80 (249)
T PRK04328 2 VKRVKTGIPGMDEILY-GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKY 80 (249)
T ss_pred CceecCCchhHHHHhc-CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHH
Confidence 3579999999999999 999999999999999999999999999888788899999999987764 345667775432
Q ss_pred -----ceec-------------------CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHH
Q 017792 113 -----LLLA-------------------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQAR 168 (366)
Q Consensus 113 -----~~~~-------------------~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar 168 (366)
+.+. .+...++++..+...+...+++++||||++.+.. . . . ...|
T Consensus 81 ~~~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~-~---~----~---~~~r 149 (249)
T PRK04328 81 EEEGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYL-T---K----P---AMAR 149 (249)
T ss_pred hhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhc-C---C----h---HHHH
Confidence 2211 2334566777777777777899999999998862 1 1 0 1123
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEE
Q 017792 169 LMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIV 248 (366)
Q Consensus 169 ~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~ 248 (366)
..+..|...+++.|+|+++++|.... ..+.++..++|+||.+|.|+.... .+ ..++.+.|.
T Consensus 150 ---~~~~~l~~~lk~~g~t~llt~e~~~~----------~~~~~~~~~~~~~D~vI~L~~~~~--~~----~~~R~l~I~ 210 (249)
T PRK04328 150 ---SIVMQLKRVLSGLGCTAIFVSQVSVG----------ERGFGGPGVEHAVDGIIRLDLDEI--DG----ELKRSLIVW 210 (249)
T ss_pred ---HHHHHHHHHHHhCCCEEEEEECcccc----------ccccCCCCcEEEEEEEEEEEEEec--CC----cEEEEEEEE
Confidence 34556666667889999999997642 112233448999999999986431 11 234479999
Q ss_pred ecCCCCCC-CeeEEEEEeCCCCCc
Q 017792 249 KNKLAPPF-KTAQFELEFGKGISR 271 (366)
Q Consensus 249 K~r~~~~~-~~~~~~i~~~~Gi~~ 271 (366)
|+|..++. ...+|.|+ +.|+..
T Consensus 211 K~Rg~~~~~~~~~~~It-~~Gi~v 233 (249)
T PRK04328 211 KMRGTKHSMRRHPFEIT-DKGIVV 233 (249)
T ss_pred EccCCCCCCceEEEEEc-CCCEEE
Confidence 99987664 45789998 789863
No 28
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.91 E-value=8.7e-23 Score=186.22 Aligned_cols=202 Identities=21% Similarity=0.265 Sum_probs=144.7
Q ss_pred cccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCcc--
Q 017792 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL-- 113 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~~-- 113 (366)
+++||++.||.+|+ ||+|+|++++|.|+||+|||||+.+++......+..++|++.|+..+. ..++++|++++++
T Consensus 1 ri~tGi~~LD~~l~-GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~ 79 (229)
T TIGR03881 1 RLSTGVEGLDKLLE-GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIE 79 (229)
T ss_pred CcCCChhhHHHhhc-CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhh
Confidence 47999999999999 999999999999999999999999998877677889999999887664 3466778766532
Q ss_pred ----eec-------------CCCCHHHHHHHHHHHHhcC--CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHH
Q 017792 114 ----LLA-------------QPDCGEQALSLVDTLIRSG--SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQAL 174 (366)
Q Consensus 114 ----~~~-------------~~~~~e~~l~~~~~~~~~~--~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L 174 (366)
.+. ...+.+++...+....... ..++++|||+..+.. . ++ ...| ..+
T Consensus 80 ~~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~-~----~~------~~~r---~~~ 145 (229)
T TIGR03881 80 EGKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWL-D----KP------AMAR---KYS 145 (229)
T ss_pred cCCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhc-c----Ch------HHHH---HHH
Confidence 221 1246777777777766542 467999999998862 1 11 1223 234
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCC
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAP 254 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~ 254 (366)
+.|...+++.|+|+|+++|...... + ..+..++++||.+|.|+... ..+ ..++.+.|.|+|..+
T Consensus 146 ~~l~~~l~~~~~tvil~~~~~~~~~------~----~~~~~~~~l~D~vI~L~~~~--~~~----~~~R~i~i~K~R~~~ 209 (229)
T TIGR03881 146 YYLKRVLNRWNFTILLTSQYAITTS------Q----AFGFGIEHVADGIIRFRKVV--VDG----ELRRYLIVEKMRQTN 209 (229)
T ss_pred HHHHHHHHhCCCEEEEEecccccCC------C----CcccceEEEEeEEEEEEEec--cCC----cEEEEEEEEeccCCC
Confidence 4555556778999999999543210 0 11123899999999998643 111 234479999999775
Q ss_pred CC-CeeEEEEEeCCCCC
Q 017792 255 PF-KTAQFELEFGKGIS 270 (366)
Q Consensus 255 ~~-~~~~~~i~~~~Gi~ 270 (366)
+. ...+|+|..+.||.
T Consensus 210 ~~~~~~~~~I~~~~Gi~ 226 (229)
T TIGR03881 210 HDKRAWEIDIVPGKGLV 226 (229)
T ss_pred CCCceeEEEEcCCCceE
Confidence 43 46778887557875
No 29
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.91 E-value=1.5e-23 Score=190.96 Aligned_cols=201 Identities=28% Similarity=0.376 Sum_probs=143.9
Q ss_pred ccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCH--HHHhhcccccCc---
Q 017792 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP--SLAETIGVKTEN--- 112 (366)
Q Consensus 39 i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~--~~~~~ig~~~~~--- 112 (366)
+|||++.||.+|+ ||+|+|++++|.|+||+|||+|+.+++...... |.+|+|++.+++... ..++.+|++...
T Consensus 1 V~TGI~~LD~~l~-GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~ 79 (226)
T PF06745_consen 1 VPTGIPGLDELLG-GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYED 79 (226)
T ss_dssp E--SSTTHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHH
T ss_pred CCCCchhHHHhhc-CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhh
Confidence 6899999999999 999999999999999999999999999888888 999999999887764 345677776542
Q ss_pred ---ceecC---------CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHH
Q 017792 113 ---LLLAQ---------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180 (366)
Q Consensus 113 ---~~~~~---------~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~ 180 (366)
+.+.+ +.+.++++..+...+...+.+++||||++.+. ... . .. . +..+++.+...
T Consensus 80 ~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~--~---~~----~---~r~~l~~l~~~ 146 (226)
T PF06745_consen 80 SGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LYD--D---PE----E---LRRFLRALIKF 146 (226)
T ss_dssp TTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSS--S---GG----G---HHHHHHHHHHH
T ss_pred cCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcC--C---HH----H---HHHHHHHHHHH
Confidence 22221 45678888888888777778999999999983 111 1 11 1 22467777777
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeee-eceEEEEEEEeceeecCccccccEEEEEEEecCCCCC-CCe
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKF-YASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP-FKT 258 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~-~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~-~~~ 258 (366)
+++.|+|+|++.|...... ......+.+ +||.+|.|+... .+. ..++.+.|.|+|..++ ...
T Consensus 147 l~~~~~t~llt~~~~~~~~----------~~~~~~i~~~l~D~vI~L~~~~---~~~---~~~R~l~I~K~Rg~~~~~~~ 210 (226)
T PF06745_consen 147 LKSRGVTTLLTSEMPSGSE----------DDGTFGIEHYLADGVIELRYEE---EGG---RIRRRLRIVKMRGSRHSTGI 210 (226)
T ss_dssp HHHTTEEEEEEEEESSSSS----------SSSSTSHHHHHSSEEEEEEEEE---ETT---EEEEEEEEEEETTS----BE
T ss_pred HHHCCCEEEEEEccccCcc----------cccccchhhhcccEEEEEEEEe---eCC---EEEEEEEEEEcCCCCCCCcE
Confidence 7889999999999543211 122233766 999999998643 111 3455799999998765 457
Q ss_pred eEEEEEeCCCCC
Q 017792 259 AQFELEFGKGIS 270 (366)
Q Consensus 259 ~~~~i~~~~Gi~ 270 (366)
.+|.|. +.|+.
T Consensus 211 ~~f~I~-~~Gi~ 221 (226)
T PF06745_consen 211 HPFEIT-PGGIE 221 (226)
T ss_dssp EEEEEE-TTEEE
T ss_pred EEEEEE-CCeEE
Confidence 889998 58875
No 30
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.90 E-value=2.6e-22 Score=201.94 Aligned_cols=206 Identities=17% Similarity=0.214 Sum_probs=147.3
Q ss_pred CcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCH--HHHhhcccccCcc
Q 017792 37 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP--SLAETIGVKTENL 113 (366)
Q Consensus 37 ~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~--~~~~~ig~~~~~~ 113 (366)
+++|||++.||.+|+ ||+|+|+++.|.|+||||||||+++++...... +.+|+|++.+++.+. ..++++|++++.+
T Consensus 1 ~r~~TGI~gLD~il~-GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~ 79 (484)
T TIGR02655 1 AKIRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKL 79 (484)
T ss_pred CcCCCCchhHHHhcC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHH
Confidence 368999999999999 999999999999999999999999998876555 789999999987764 4577889877633
Q ss_pred ------eecC------------CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHH
Q 017792 114 ------LLAQ------------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALR 175 (366)
Q Consensus 114 ------~~~~------------~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~ 175 (366)
.+.. ....++++..+...++.++.+.++|||+.++...... . ... .+.+.
T Consensus 80 ~~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~------~---~~~---r~~l~ 147 (484)
T TIGR02655 80 VDEGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDA------V---SVV---RREIF 147 (484)
T ss_pred hhcCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCc------h---HHH---HHHHH
Confidence 2221 1345666777777778889999999999887521111 0 111 23455
Q ss_pred HHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC
Q 017792 176 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 255 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~ 255 (366)
.+.+.+++.|+|+|+++|....... ... .| ..+++||.+|.|+... .+. ..++.+.|.|+|..++
T Consensus 148 ~Li~~L~~~g~TvLLtsh~~~~~~~-------~~~-~~-~~e~laDgVI~L~~~~---~~~---~~~R~l~I~K~Rgs~~ 212 (484)
T TIGR02655 148 RLVARLKQIGVTTVMTTERIEEYGP-------IAR-YG-VEEFVSDNVVILRNVL---EGE---RRRRTLEILKLRGTSH 212 (484)
T ss_pred HHHHHHHHCCCEEEEEecCcccccc-------ccc-CC-ceeEeeeeEEEEEEEe---cCC---EEEEEEEEEECCCCCc
Confidence 5566667789999999998654211 110 01 1389999999998542 221 1234799999997654
Q ss_pred C-CeeEEEEEeCCCCCc
Q 017792 256 F-KTAQFELEFGKGISR 271 (366)
Q Consensus 256 ~-~~~~~~i~~~~Gi~~ 271 (366)
. ...+|.|+ +.||..
T Consensus 213 ~~~~~~~~It-~~Gi~v 228 (484)
T TIGR02655 213 MKGEYPFTIT-DHGINI 228 (484)
T ss_pred CCceEEEEEc-CCcEEE
Confidence 3 35678887 667663
No 31
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.89 E-value=4.3e-22 Score=200.30 Aligned_cols=208 Identities=19% Similarity=0.217 Sum_probs=158.6
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 112 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~ 112 (366)
...+++||+++||++|| ||+|+|+++.|.||||+|||||+++++......|.+|+|+++|++.++ ..++++|++.++
T Consensus 241 ~~~~~~tGi~~lD~~lg-GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~ 319 (484)
T TIGR02655 241 SNVRVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEE 319 (484)
T ss_pred cccccCCChHhHHHHhc-CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHH
Confidence 45689999999999999 999999999999999999999999999999988889999999999875 567889987754
Q ss_pred ------ceecC----CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 017792 113 ------LLLAQ----PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 182 (366)
Q Consensus 113 ------~~~~~----~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~ 182 (366)
+.+.. ..+.++.+..+...+...+++++||||++.+.. . +.. .+.| ..+..|...++
T Consensus 320 ~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~-~-~~~--------~~~r---~~~~~l~~~lk 386 (484)
T TIGR02655 320 MEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALAR-G-VSN--------NAFR---QFVIGVTGYAK 386 (484)
T ss_pred HhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHH-h-cCH--------HHHH---HHHHHHHHHHh
Confidence 33322 235578888888888888899999999998862 1 211 1223 34566777778
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC-CCeeEE
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP-FKTAQF 261 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~-~~~~~~ 261 (366)
+.|+|+++++......+ ....+. ..+++++|.+|.|+..+. .+ ..++.+.|+|.|...+ ....+|
T Consensus 387 ~~~it~~~t~~~~~~~~------~~~~~~--~~~s~l~D~ii~l~~~e~--~g----~~~r~i~V~K~R~~~~~~~~~~~ 452 (484)
T TIGR02655 387 QEEITGFFTNTSDQFMG------SHSITD--SHISTITDTILMLQYVEI--RG----EMSRAINVFKMRGSWHDKGIREF 452 (484)
T ss_pred hCCCeEEEeeccccccc------CCccCC--CCeeEeeeEEEEEEEEec--CC----EEEEEEEEEEccCCCCCCceEEE
Confidence 89999999977543211 101111 228999999999986542 11 2344688999997754 367889
Q ss_pred EEEeCCCCCc
Q 017792 262 ELEFGKGISR 271 (366)
Q Consensus 262 ~i~~~~Gi~~ 271 (366)
.|+ +.||..
T Consensus 453 ~It-~~Gi~v 461 (484)
T TIGR02655 453 MIS-DKGPEI 461 (484)
T ss_pred EEc-CCcEEE
Confidence 999 899864
No 32
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]
Probab=99.89 E-value=5.5e-22 Score=178.58 Aligned_cols=228 Identities=26% Similarity=0.377 Sum_probs=163.7
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEeCCCCCCHHHHhhc-
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPSLAETI- 106 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~------gg~vl~id~e~~~~~~~~~~i- 106 (366)
....+++||++.||..|+ ||||.+.+++|+|++|+|||+|++|++...+.. ++.++||.+|..++..+..++
T Consensus 79 ~~~~~lttgc~~LD~~L~-GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~ 157 (351)
T KOG1564|consen 79 TNRSKLTTGCVALDECLR-GGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLS 157 (351)
T ss_pred CCchhcccccHHHHHHhc-CCcccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHHHH
Confidence 344689999999999999 999999999999999999999999999888742 468999999999885442222
Q ss_pred cccc------------C----cceecCCCCHHHHHHHHHH----HHhcCCceEEEEecccccCCCCccCCccchh-hHHH
Q 017792 107 GVKT------------E----NLLLAQPDCGEQALSLVDT----LIRSGSVDVVVVDSVAALVPKGELDGEMGDA-HMAM 165 (366)
Q Consensus 107 g~~~------------~----~~~~~~~~~~e~~l~~~~~----~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~-~~~~ 165 (366)
.+.+ . ++++.....++.++.++.. +.....+++|||||+++.+ +.+++....+. .+..
T Consensus 158 ~~~~~rp~~~~~~~~~~Npgd~IFv~~~~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~f-R~E~d~~~Sdl~~r~~ 236 (351)
T KOG1564|consen 158 HTLPQRPNPEKELNYNDNPGDHIFVENVHDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALF-RSEFDYNPSDLKKRAR 236 (351)
T ss_pred HhcccCCCcchhhhhccCCCceEEEEeccchhhHHHHHhhhccceeccCcceEEEEehhhHHH-HHHhccChhhhhhHHH
Confidence 1111 1 2455555567777777665 3456679999999999999 77776433322 2233
Q ss_pred HHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc------CCCCe-------eeccCCceeeeeceEEEEEEEecee
Q 017792 166 QARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG------FGGPT-------EVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 166 ~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~------~~~~~-------~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+-+.++..|+.|+ .+++++|+++||+.+.+.... +.+-. ..|+.|-.|++...+|+.+.|..
T Consensus 237 ~l~rla~~Lr~LA---~~~~~aVV~~NQVtd~~~~~~~~~~l~~~d~r~~w~sgw~vPsLGL~WaN~v~tRl~l~r~~-- 311 (351)
T KOG1564|consen 237 HLFRLAGKLRQLA---SKFDLAVVCANQVTDRVETSDDLSGLRIGDYRYLWSSGWVVPSLGLTWANCVSTRLLLSRST-- 311 (351)
T ss_pred HHHHHHHHHHHHH---HhcCccEEEeeccccccccccccCCccccchhhccccccccccccceeccccceeeeeeecc--
Confidence 3344556666666 468999999999998755421 11111 57889999999999999999832
Q ss_pred ecCcc-cc-ccEEEEEEEecCCCCCCCeeEEEEEeCCCCC
Q 017792 233 KKGEE-TI-GSQIAVKIVKNKLAPPFKTAQFELEFGKGIS 270 (366)
Q Consensus 233 ~~~~~-~~-g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~ 270 (366)
+..+. .. ...++++|+-+.+.||. .+.|.|+ ..||.
T Consensus 312 k~~~sa~~~~~~R~l~VvySp~~p~~-~~~~~It-~eGI~ 349 (351)
T KOG1564|consen 312 KNCDSAVSRSAKRTLRVVYSPYLPPS-SCEFMIT-AEGIC 349 (351)
T ss_pred ccccchhhcccceEEEEEecCCCCCc-ceEEEEe-cceEe
Confidence 21111 11 22347999999988874 5788888 67764
No 33
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.88 E-value=7.5e-22 Score=180.73 Aligned_cols=206 Identities=20% Similarity=0.279 Sum_probs=145.6
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 112 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~ 112 (366)
..++++||++.||.+|+ ||+|+|+++.|+|+||+|||+|+.+++......+++|+|++.++.... ..+.++|++...
T Consensus 3 ~~~~~~tGi~~LD~~l~-gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~ 81 (234)
T PRK06067 3 KKEIISTGNEELDRKLG-GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISD 81 (234)
T ss_pred CceEEecCCHHHHHhhC-CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhH
Confidence 46789999999999999 999999999999999999999999999888778999999999987764 234567776543
Q ss_pred c------eec---------CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHH
Q 017792 113 L------LLA---------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 177 (366)
Q Consensus 113 ~------~~~---------~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L 177 (366)
. .+. .....++++..+...+...+++++++||++++... .+ . ..+..++..+
T Consensus 82 ~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~--~~----~-------~~~~~~l~~l 148 (234)
T PRK06067 82 FFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY--AE----E-------DDILNFLTEA 148 (234)
T ss_pred HHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc--CC----H-------HHHHHHHHHH
Confidence 2 111 12345678888888887778999999999977421 11 1 1122333322
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCC-
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPF- 256 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~- 256 (366)
..+++.++|+++++|....... . . ..+.+++|.+|.|+... .+. ..++.+.|.|.|..++.
T Consensus 149 -~~l~~~g~tvllt~~~~~~~~~--------~-~--~~~~~l~DgvI~L~~~~---~~~---~~~r~l~i~K~Rg~~~~~ 210 (234)
T PRK06067 149 -KNLVDLGKTILITLHPYAFSEE--------L-L--SRIRSICDVYLKLRAEQ---IGG---RYVKVLEVVKLRGARKTT 210 (234)
T ss_pred -HHHHhCCCEEEEEecCCcCCHH--------H-H--HHHHhheEEEEEEEeec---cCC---EEeEEEEEEhhcCCCCCC
Confidence 3334568999999996542110 0 0 12688999999998542 111 23447999999977553
Q ss_pred -CeeEEEEEeCCCCCch
Q 017792 257 -KTAQFELEFGKGISRE 272 (366)
Q Consensus 257 -~~~~~~i~~~~Gi~~~ 272 (366)
....|.|.-+.||...
T Consensus 211 ~~~~~~~I~~~~Gi~v~ 227 (234)
T PRK06067 211 GNIISFDVDPAFGIKII 227 (234)
T ss_pred CCEEEEEEcCCCCeEEE
Confidence 4568888734688644
No 34
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.88 E-value=3.8e-21 Score=174.87 Aligned_cols=203 Identities=23% Similarity=0.354 Sum_probs=140.7
Q ss_pred ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCc-----ce
Q 017792 42 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN-----LL 114 (366)
Q Consensus 42 G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~-----~~ 114 (366)
|++.||.+|+ ||+|+|++++|.|+||+|||+|+.+++......+..|+|++.|++.+. ..+..+|++.+. +.
T Consensus 1 Gi~~LD~~l~-gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~ 79 (224)
T TIGR03880 1 GIPGLDEMLG-GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLY 79 (224)
T ss_pred CchhhHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeE
Confidence 7899999999 999999999999999999999999999988878889999999997764 445667775543 33
Q ss_pred ecCCC------CHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEE
Q 017792 115 LAQPD------CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTIL 188 (366)
Q Consensus 115 ~~~~~------~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tV 188 (366)
+.+.. ...++...+..++....++++||||++.+.+ .... + ...+ ..+..+.+.+++.|+|+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~--~~~~---~----~~~r---~~l~~l~~~lk~~~~tv 147 (224)
T TIGR03880 80 IVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLLET--LFDD---D----AERR---TELFRFYSSLRETGVTT 147 (224)
T ss_pred EEecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhh--hcCC---H----HHHH---HHHHHHHHHHHhCCCEE
Confidence 33221 1334444555666677889999999998742 1111 0 1111 34555556667789999
Q ss_pred EEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC-CCeeEEEEEeCC
Q 017792 189 IFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP-FKTAQFELEFGK 267 (366)
Q Consensus 189 I~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~-~~~~~~~i~~~~ 267 (366)
++++|.... +|.... -..++++||.+|.|+... .+. ....++.+.|+|+|...+ ....+|.|+ +.
T Consensus 148 ll~s~~~~~-------~~~~~~--~~~~~~l~D~vI~L~~~~---~~~-~~~~~r~l~v~K~Rg~~~~~~~~~~~i~-~~ 213 (224)
T TIGR03880 148 ILTSEADKT-------NVFASK--YGLIEYLADGVIILKYVR---NSD-LRDVRLAVEVVKMRRSKHSREIKPYEIT-DS 213 (224)
T ss_pred EEEEcccCC-------CCCccC--CCceEEEEeEEEEEeeee---ccc-CcceEEEEEEEEccCCCCCCceEEEEEc-CC
Confidence 999997642 010000 122799999999996321 111 112344689999998754 357789998 88
Q ss_pred CCCc
Q 017792 268 GISR 271 (366)
Q Consensus 268 Gi~~ 271 (366)
||..
T Consensus 214 Gi~v 217 (224)
T TIGR03880 214 GITV 217 (224)
T ss_pred cEEE
Confidence 8763
No 35
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=99.88 E-value=7.6e-21 Score=188.58 Aligned_cols=209 Identities=24% Similarity=0.259 Sum_probs=147.0
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEeCCCCCCHHH----Hhhcccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALDPSL----AETIGVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~-~~gg~vl~id~e~~~~~~~----~~~ig~~ 109 (366)
...++|||++.||.+++ |+.+|+++.|.|+||+|||+|+++++..+. ..+.+|+|++.|++..... +...++.
T Consensus 173 ~~~gi~tG~~~LD~~~~--G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~ 250 (421)
T TIGR03600 173 ELTGLSTGLPKLDRLTN--GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGIN 250 (421)
T ss_pred CCcceeCCChhHHHHhc--CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 46789999999999997 999999999999999999999999998776 5678899999998765322 2222332
Q ss_pred cC-------------------------cceecC--CCCHHHHHHHHHHHHhcC-CceEEEEecccccCCCCccCCccchh
Q 017792 110 TE-------------------------NLLLAQ--PDCGEQALSLVDTLIRSG-SVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 110 ~~-------------------------~~~~~~--~~~~e~~l~~~~~~~~~~-~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
.. ++++.. ..+++++...+..+.... .++++|||+++.+.+. .+ .+
T Consensus 251 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~---~~--~~- 324 (421)
T TIGR03600 251 TGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPT---RG--RD- 324 (421)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCC---CC--CC-
Confidence 21 222322 257888888887766554 6999999999988632 11 11
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCccccc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g 240 (366)
+. ..+....+.|...+++++++||+++|.++.........|.. -..++..+++.||.++.+.|...+....+..+
T Consensus 325 -~~---~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdlr~Sg~Ieq~AD~v~~l~R~~~~~~~~~~~~ 400 (421)
T TIGR03600 325 -RN---EELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGYYDAREPPAG 400 (421)
T ss_pred -HH---HHHHHHHHHHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHHhhcCCccccCcEEEEeccccccCCccCCCC
Confidence 11 22333334444444678999999999988755322223322 24556779999999999999876543333223
Q ss_pred cEEEEEEEecCCCCCC
Q 017792 241 SQIAVKIVKNKLAPPF 256 (366)
Q Consensus 241 ~~~~l~v~K~r~~~~~ 256 (366)
...+.|.|||.++.+
T Consensus 401 -~~el~v~K~R~G~~g 415 (421)
T TIGR03600 401 -VAELILAKNRHGPTG 415 (421)
T ss_pred -ceEEEEECCCCCCCc
Confidence 347999999998774
No 36
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.87 E-value=4.1e-21 Score=194.83 Aligned_cols=209 Identities=20% Similarity=0.266 Sum_probs=150.7
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCH--HHHhhccccc
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP--SLAETIGVKT 110 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~--~~~~~ig~~~ 110 (366)
..++++|||++.||.+|+ ||+|+|++++|+|+||+|||+|+.+++...... |.+|+|++.|++.+. ..+..+|+++
T Consensus 8 ~~~~ri~TGI~~LD~~l~-GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~ 86 (509)
T PRK09302 8 PGIEKLPTGIEGFDDITH-GGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDL 86 (509)
T ss_pred CCCccccCCchhHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCH
Confidence 367899999999999999 999999999999999999999999999887776 889999999998775 4456678765
Q ss_pred Ccc------eecC------------CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHH
Q 017792 111 ENL------LLAQ------------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 172 (366)
Q Consensus 111 ~~~------~~~~------------~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~ 172 (366)
..+ .+.. ....++++..+...+...+++.+||||++.+.. .+.. . ..+..
T Consensus 87 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~--~~d~----~------~~~r~ 154 (509)
T PRK09302 87 QKLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS--GFSN----E------AVVRR 154 (509)
T ss_pred HHHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh--hccC----H------HHHHH
Confidence 432 2111 123466777777777778899999999998752 1111 0 11234
Q ss_pred HHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCC
Q 017792 173 ALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKL 252 (366)
Q Consensus 173 ~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~ 252 (366)
.+.++...+++.|+|+|+++|....... .... ....++||.+|.|+... .+. ...+.+.|.|+|.
T Consensus 155 ~l~~L~~~Lk~~g~TvLlt~~~~~~~~~-------~~~~--~~~~~laDgVI~L~~~~---~~~---~~~R~l~I~K~Rg 219 (509)
T PRK09302 155 ELRRLFAWLKQKGVTAVITGERGDEYGP-------LTRY--GVEEFVSDCVIILRNRL---EGE---KRTRTLRILKYRG 219 (509)
T ss_pred HHHHHHHHHHhCCCEEEEEECCccCcCC-------cccc--CceEEEeeEEEEEeEEc---cCC---eEEEEEEEEECCC
Confidence 5666767777889999999997643111 0100 12578999999998543 121 2234799999997
Q ss_pred CCCC-CeeEEEEEeCCCCCc
Q 017792 253 APPF-KTAQFELEFGKGISR 271 (366)
Q Consensus 253 ~~~~-~~~~~~i~~~~Gi~~ 271 (366)
.+.. ...+|.|. +.||..
T Consensus 220 ~~~~~~~~~f~I~-~~Gi~v 238 (509)
T PRK09302 220 TTHGKNEYPFTIT-EDGISV 238 (509)
T ss_pred CCcCCccEEEEEC-CCcEEE
Confidence 6543 35678886 777664
No 37
>PHA02542 41 41 helicase; Provisional
Probab=99.87 E-value=1.9e-20 Score=186.57 Aligned_cols=242 Identities=16% Similarity=0.139 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 017792 7 ALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG 86 (366)
Q Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g 86 (366)
.+..+++.+++.+... .....++|||++.||.+++ ||+.+|+++.|.|+||.|||||+++++..+...|
T Consensus 150 ~~~~~~~~ie~~~~~~----------~~~~~gi~TG~~~LD~~t~-gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g 218 (473)
T PHA02542 150 VGHDYFEDYEERYDSY----------QSKANKIPFKLEILNKITK-GGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQG 218 (473)
T ss_pred HHHHHHHHHHHHHhhc----------cCCCCccCCCcHHHHHhcc-CCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcC
Confidence 4455666666643210 1236789999999999998 8999999999999999999999999999988778
Q ss_pred CeEEEEeCCCCCCHH----HHhhcccccC-----------------------cceec----CCCCHHHHHHHHHHHHhcC
Q 017792 87 GYCVFIDAEHALDPS----LAETIGVKTE-----------------------NLLLA----QPDCGEQALSLVDTLIRSG 135 (366)
Q Consensus 87 g~vl~id~e~~~~~~----~~~~ig~~~~-----------------------~~~~~----~~~~~e~~l~~~~~~~~~~ 135 (366)
..|+|++.|++.+.. .+...++..+ ++.+. ...++.++...++.+....
T Consensus 219 ~~Vl~fSLEM~~~ql~~Rl~a~~~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~ 298 (473)
T PHA02542 219 YNVLYISMEMAEEVIAKRIDANLLDVSLDDIDDLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKK 298 (473)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHcCCCHHHHhhcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhc
Confidence 899999999886632 1122222221 22222 2246777777777766544
Q ss_pred C--ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccC
Q 017792 136 S--VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCG 212 (366)
Q Consensus 136 ~--~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~g 212 (366)
. +++||||+++.+.+ ........+ +......+++.|+.|+ ++.+|+||+++|.++..... .+|.. -..+
T Consensus 299 g~~~dlVvIDYLqL~~~-~~~~~~~~n--r~~ei~~Isr~LK~lA---kel~vpVi~lsQLnR~~e~r--~dP~lsDLre 370 (473)
T PHA02542 299 NFKPDVIIVDYLGICAS-SRLRVSSEN--SYTYVKAIAEELRGLA---VEHDVVVWTAAQTTRSGWDS--SDVDMSDTAE 370 (473)
T ss_pred CCCCCEEEEechhhccC-CcccCCCCC--hHHHHHHHHHHHHHHH---HHhCCeEEEEEeeCcccccc--CCCcchhccc
Confidence 3 89999999988752 111111111 1122233444555555 67899999999999986542 22322 2455
Q ss_pred CceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 213 GNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 213 G~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
...+++.||.++.|.|...+.+ .+ ...+.+.|||+++.+....+.+.|.....++
T Consensus 371 SG~IEqdAD~vl~l~r~~~~~~----~~-~~eliv~KnR~G~~g~~g~v~l~f~~~~~~F 425 (473)
T PHA02542 371 SAGLPATADFMLAVIETEELAQ----MG-QQLVKQLKSRYGDKNKFNKFLMGVDKGNQRW 425 (473)
T ss_pred ccchHhhcCEEEEEecCccccc----CC-eEEEEEecCCCCCCCCceEEEEEEECCcCcc
Confidence 6679999999999998654421 12 3478999999999876567778776554433
No 38
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.87 E-value=8.7e-21 Score=192.49 Aligned_cols=208 Identities=21% Similarity=0.286 Sum_probs=156.1
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 112 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~ 112 (366)
..++++||++.||.+|+ ||+|+|++++|.|+||+|||+|+.+++......+.+|+|++++++.+. ..++.+|++.+.
T Consensus 251 ~~~~~~tGi~~lD~~l~-GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~ 329 (509)
T PRK09302 251 SNERISSGVPDLDEMLG-GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEK 329 (509)
T ss_pred ccccccCCcHHHHHhhc-CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHH
Confidence 46789999999999999 999999999999999999999999999999888999999999987664 345678876543
Q ss_pred c------eec--C--CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 017792 113 L------LLA--Q--PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 182 (366)
Q Consensus 113 ~------~~~--~--~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~ 182 (366)
. .+. . ....++.+..+...+...+++++||||++.+.... +. ..+.+.++.|...++
T Consensus 330 ~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~-------~~------~~~~~~l~~l~~~~k 396 (509)
T PRK09302 330 MEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGG-------SL------NEFRQFVIRLTDYLK 396 (509)
T ss_pred HhhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC-------CH------HHHHHHHHHHHHHHH
Confidence 2 111 1 23457777788887878889999999999986211 10 123456777778888
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCC-CCCeeEE
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAP-PFKTAQF 261 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~-~~~~~~~ 261 (366)
+.|+|+|+++|.....+. +..+. ..+.++||.+|.|+.... .+ ..++.+.|+|.|..+ +....+|
T Consensus 397 ~~~~t~l~t~~~~~~~g~-----~~~~~---~~~~~l~D~vI~L~~~~~--~~----~~~R~l~I~K~Rg~~~~~~~~~f 462 (509)
T PRK09302 397 SEEITGLFTNLTPDFMGS-----HSITE---SHISSLTDTWILLQYVEI--NG----EMNRALYVLKMRGSWHSNQIREF 462 (509)
T ss_pred hCCCeEEEEeccccccCC-----CCCCc---CceEEeeeEEEEEEEeec--CC----eeEEEEEEEEcCCCCCCCceEEE
Confidence 999999999997653211 11111 128999999999986431 11 234479999999765 3457889
Q ss_pred EEEeCCCCCc
Q 017792 262 ELEFGKGISR 271 (366)
Q Consensus 262 ~i~~~~Gi~~ 271 (366)
.|+ +.|+..
T Consensus 463 ~It-~~Gi~v 471 (509)
T PRK09302 463 VIT-DKGIHI 471 (509)
T ss_pred EEe-CCcEEE
Confidence 998 889864
No 39
>PRK05748 replicative DNA helicase; Provisional
Probab=99.87 E-value=1.8e-20 Score=187.13 Aligned_cols=224 Identities=15% Similarity=0.178 Sum_probs=153.1
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCHHHHhhc----ccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLAETI----GVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~~~~~~~~i----g~~ 109 (366)
...++|||++.||.+++ |+++|+++.|.|+||+|||+|+++++..+.. .+..|+|++.|++......+-+ +++
T Consensus 182 ~~~gi~TG~~~LD~~~~--G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l~~~~~v~ 259 (448)
T PRK05748 182 DITGIPTGFTDLDKMTS--GLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGNID 259 (448)
T ss_pred CCCCccCChHHHHHhcC--CCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 46789999999999986 9999999999999999999999999988764 5778999999988664222111 111
Q ss_pred cC-------------------------cceec--CCCCHHHHHHHHHHHHhcC-CceEEEEecccccCCCCccCCccchh
Q 017792 110 TE-------------------------NLLLA--QPDCGEQALSLVDTLIRSG-SVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 110 ~~-------------------------~~~~~--~~~~~e~~l~~~~~~~~~~-~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
.. ++++. ...++.++...+..+.... +++++|||+++.+.... .. ++.
T Consensus 260 ~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~-~~---~~~ 335 (448)
T PRK05748 260 AQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSG-RS---GEN 335 (448)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCC-CC---CcC
Confidence 11 12221 2357888888888877765 79999999999875211 11 111
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCccccc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g 240 (366)
....+....+.|...+++.+|+||+++|.++..+......|.. -..++..+++.||.+++|.+...+....+..+
T Consensus 336 ----r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~Sg~Ieq~AD~v~~l~r~~~~~~~~~~~~ 411 (448)
T PRK05748 336 ----RQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYRDDYYDEETENKN 411 (448)
T ss_pred ----HHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHHHhhcchhcCCCEEEEEecccccCccccCCC
Confidence 1123334444555555778999999999998654321122311 13445669999999999998876543332233
Q ss_pred cEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 241 ~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
...+.|.|||.++++ .+.+.|.....++
T Consensus 412 -~~e~~v~K~R~G~~g---~~~~~~~~~~~~f 439 (448)
T PRK05748 412 -TIEIIIAKQRNGPVG---TVELAFQKEYNKF 439 (448)
T ss_pred -ceEEEEeccCCCCCc---eEEEEEeCCCCcc
Confidence 347899999999874 4566665554443
No 40
>PRK08760 replicative DNA helicase; Provisional
Probab=99.87 E-value=2e-20 Score=187.13 Aligned_cols=223 Identities=19% Similarity=0.172 Sum_probs=153.1
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCHHHHhhc----ccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLAETI----GVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~~~~~~~~i----g~~ 109 (366)
...++|||++.||.+++ |+.+|+++.|.|+||+|||+|+++++..+.. .+.+|+|++.|++..+...+-+ +++
T Consensus 208 ~~~Gi~TG~~~LD~~t~--G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~s~i~ 285 (476)
T PRK08760 208 NITGLPTGYNDFDAMTA--GLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRIN 285 (476)
T ss_pred CCCcccCCcHHHHHHhc--CCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhhCCCc
Confidence 46789999999999886 7999999999999999999999999988864 4678999999987653221111 111
Q ss_pred cC-------------------------cceec--CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 110 TE-------------------------NLLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 110 ~~-------------------------~~~~~--~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
.. ++++. ...+++++...+..+....++++||||+++.+..... . ..
T Consensus 286 ~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~~--~----~~ 359 (476)
T PRK08760 286 AQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGN--S----EN 359 (476)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCCC--C----cc
Confidence 11 12222 2347888888888887777899999999987752111 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecC-ccccc
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKG-EETIG 240 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~-~~~~g 240 (366)
+ ...+....+.|...+++++|+||+++|+++..+...-..|.. -..++..|++.||.+++|.|...+... .+..|
T Consensus 360 r---~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~~~~~~~~~ 436 (476)
T PRK08760 360 R---ATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIYRDDYYNKENSPDKG 436 (476)
T ss_pred c---HHHHHHHHHHHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhccchhcCCCEEEEEechhhcccccccCCC
Confidence 1 122333344444444678999999999998765421222321 134567799999999999987765433 22223
Q ss_pred cEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 241 ~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
...+.|.|||.+++ ..+.+.|.....++
T Consensus 437 -~~eliiaKnR~G~~---g~~~l~f~~~~~~f 464 (476)
T PRK08760 437 -LAEIIIGKHRGGPT---GSCKLKFFGEYTRF 464 (476)
T ss_pred -ceEEEEEccCCCCC---ceEEEEEecCCCce
Confidence 34789999999987 45666665555444
No 41
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=99.87 E-value=1.8e-20 Score=186.62 Aligned_cols=220 Identities=17% Similarity=0.181 Sum_probs=150.2
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCHHHHh----hcccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLAE----TIGVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~~~~~~~----~ig~~ 109 (366)
...++|||++.||.+++ |+++|+++.|.|+||+|||+|+++++..+.. .+..|+|++.|++......+ ..+++
T Consensus 174 ~~~gi~tG~~~LD~~~~--G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~~~~~v~ 251 (434)
T TIGR00665 174 GITGVPTGFTDLDKLTS--GLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLSSESRVD 251 (434)
T ss_pred CCCcccCCchhhHhhcC--CCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHHHhcCCC
Confidence 46789999999999986 9999999999999999999999999988765 57789999999876542211 11221
Q ss_pred cC-------------------------cceec--CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 110 TE-------------------------NLLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 110 ~~-------------------------~~~~~--~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
.. ++++. ...+++++...+..+....+++++|||+++.+..... . ..
T Consensus 252 ~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~-~---~~-- 325 (434)
T TIGR00665 252 SQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQLMSGSGR-S---EN-- 325 (434)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCC-C---CC--
Confidence 10 12221 2347888888888887777899999999988752111 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCcccccc
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEETIGS 241 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~ 241 (366)
....+....+.|...+++++|+||+++|.++..+......|.. -..++..+++.||.++.|.+...+....+..+
T Consensus 326 ---r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~Sg~ieq~aD~vi~l~r~~~~~~~~~~~~- 401 (434)
T TIGR00665 326 ---RQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEYYNPDSEDKG- 401 (434)
T ss_pred ---HHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhccchhhcCCEEEEeccccccCCCcCCCC-
Confidence 1122333344444445678999999999988654311122211 23455679999999999998765543322223
Q ss_pred EEEEEEEecCCCCCCCeeEEEEEeCCCC
Q 017792 242 QIAVKIVKNKLAPPFKTAQFELEFGKGI 269 (366)
Q Consensus 242 ~~~l~v~K~r~~~~~~~~~~~i~~~~Gi 269 (366)
.+.+.|.|||.++++ .+.+.|....
T Consensus 402 ~~~l~v~KnR~G~~g---~~~l~~~~~~ 426 (434)
T TIGR00665 402 IAEIIIAKQRNGPTG---TVKLAFQGEY 426 (434)
T ss_pred ceEEEEecCCCCCCC---eEEEEEecCC
Confidence 358999999998874 4455554443
No 42
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=99.87 E-value=8.8e-21 Score=176.28 Aligned_cols=221 Identities=23% Similarity=0.243 Sum_probs=146.7
Q ss_pred cccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHH----HhhcccccC-
Q 017792 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSL----AETIGVKTE- 111 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~----~~~ig~~~~- 111 (366)
+||||++.||.++| |+.+|+++.|.|+||+|||+|+++++..+... +..|+|++.|++..... +...++...
T Consensus 1 Gi~TG~~~LD~~lg--G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~ 78 (259)
T PF03796_consen 1 GIPTGFPALDRLLG--GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNK 78 (259)
T ss_dssp SB-SSTHHHHHHHS--SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHH
T ss_pred CCCCChHHHHHHhc--CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhh
Confidence 48999999999997 99999999999999999999999999999887 57999999998765322 111122111
Q ss_pred ------------------------cceec--CCCCHHHHHHHHHHHHhc-CCceEEEEecccccCCCCccCCccchhhHH
Q 017792 112 ------------------------NLLLA--QPDCGEQALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMA 164 (366)
Q Consensus 112 ------------------------~~~~~--~~~~~e~~l~~~~~~~~~-~~~~lvviDsl~~l~~~~~l~~~~g~~~~~ 164 (366)
.+.+. +..+++++...+..+... .++++|+||++..+.+..... ...
T Consensus 79 i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~---~~~--- 152 (259)
T PF03796_consen 79 IRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSD---NRR--- 152 (259)
T ss_dssp HHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSS---CCH---
T ss_pred hhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCC---CHH---
Confidence 11221 245788888888877666 789999999999887533111 111
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCccccccEE
Q 017792 165 MQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243 (366)
Q Consensus 165 ~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~ 243 (366)
.....++..|+.|+ ++++++||+++|.++......-..|.. -..++..+++.||.++.|.+.+......+.. ...
T Consensus 153 ~~~~~i~~~Lk~lA---~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~sg~Ie~~AD~vl~l~r~~~~~~~~~~~-~~~ 228 (259)
T PF03796_consen 153 QEIGEISRELKALA---KELNIPVIALSQLNREAEDREDKRPSLSDLRESGAIEQDADVVLFLHRDEKYDEDRDDK-GEA 228 (259)
T ss_dssp HHHHHHHHHHHHHH---HHHTSEEEEEEEBSGGGGGSSSCS--HHHHCSTSSHHHH-SEEEEEEEHCHCHCCSSCT-TEE
T ss_pred HHHHHHHHHHHHHH---HHcCCeEEEccccChhhhcccccccchhhhhhhHHHHHHHhhhhhhccchhhccccCCC-CeE
Confidence 22333455565555 567999999999988754321112321 1356677999999999999876544432222 255
Q ss_pred EEEEEecCCCCCCCeeEEEEEeCCCCCchh
Q 017792 244 AVKIVKNKLAPPFKTAQFELEFGKGISRES 273 (366)
Q Consensus 244 ~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~ 273 (366)
.+.|.|||.++. ..+.+.|.....++.
T Consensus 229 ~l~v~KnR~G~~---g~v~~~f~~~~~~f~ 255 (259)
T PF03796_consen 229 ELIVAKNRNGPT---GTVPLRFNPETSRFT 255 (259)
T ss_dssp EEEEEEESSS-----EEEEEEEETTTTEEE
T ss_pred EEEEEecCCCCC---ceEEEEEECCCCeEe
Confidence 799999998877 456666655554443
No 43
>PRK05595 replicative DNA helicase; Provisional
Probab=99.86 E-value=3.1e-20 Score=185.11 Aligned_cols=223 Identities=17% Similarity=0.164 Sum_probs=152.7
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEeCCCCCCHHH----Hhhcccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALDPSL----AETIGVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~-~~gg~vl~id~e~~~~~~~----~~~ig~~ 109 (366)
...++|||++.||.+++ |+.+|+++.|.|+||+|||+|+++++..+. ..|.+|+|++.|++..+.. +...+++
T Consensus 180 ~~~gi~tg~~~ld~~~~--G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~~a~~~~v~ 257 (444)
T PRK05595 180 ETTGVASGFRELDAKTS--GFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKLLCSEANVD 257 (444)
T ss_pred CCCcccCChHHHHHhcC--CCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHhcCCC
Confidence 46789999999999885 999999999999999999999999998754 5678899999998765322 2222222
Q ss_pred cC-------------------------cceec--CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 110 TE-------------------------NLLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 110 ~~-------------------------~~~~~--~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
.. ++++. ...++.++...+..+....++++||||+++.+.+.... ..
T Consensus 258 ~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~~------~~ 331 (444)
T PRK05595 258 MLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKGS------ES 331 (444)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCCC------cc
Confidence 11 12222 23467888888887777778999999999877521110 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCcccccc
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEETIGS 241 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~ 241 (366)
+......++..|+.|+ ++.+|+||+++|+++......-..|.. -..++.++++.||.++.+.|...+....+..|.
T Consensus 332 r~~~v~~is~~LK~lA---ke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~Sg~Ieq~AD~vl~l~r~~~~~~~~~~~~~ 408 (444)
T PRK05595 332 RQQEVSEISRSIKALA---KEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADVVMFLYRDEYYNKETEDKNV 408 (444)
T ss_pred HHHHHHHHHHHHHHHH---HHhCCeEEEeeccCcchhccCCCCCchhhhhhhcccccCCCEEEEEecccccccccCCCCc
Confidence 1112223444455444 678999999999998765321112321 244566799999999999998765433332343
Q ss_pred EEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 242 QIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 242 ~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
..+.|.|||.++. ..+.+.|.....++
T Consensus 409 -~e~iv~K~R~G~~---g~~~~~~~~~~~~f 435 (444)
T PRK05595 409 -AECIIAKQRNGPT---GTVKLAWLGQYSKF 435 (444)
T ss_pred -eEEEEEccCCCCC---ceEEEEEecCCCcc
Confidence 4799999999887 45666665555444
No 44
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.86 E-value=1.5e-20 Score=175.83 Aligned_cols=207 Identities=16% Similarity=0.166 Sum_probs=141.3
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHH----Hhhccc
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSL----AETIGV 108 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~----~~~ig~ 108 (366)
-+...+|||++.||.++| |+++|+++.|.|++|+|||||+.+++..+... +..|+|++.|+...... +...++
T Consensus 8 ~~~~~~~tg~~~Ld~~~g--G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~ 85 (271)
T cd01122 8 LSNEEVWWPFPVLNKLTK--GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGK 85 (271)
T ss_pred ccccCCCCCcceeeeeeE--EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCC
Confidence 345599999999999885 99999999999999999999999999988776 88999999998654321 111132
Q ss_pred ccC------------------------cceecCC---CCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchh
Q 017792 109 KTE------------------------NLLLAQP---DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 109 ~~~------------------------~~~~~~~---~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
.+. ++.+... .+.++++..+..++...+++++|||+++.+..... .. .+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~-~~--~~- 161 (271)
T cd01122 86 RLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDER-AS--GD- 161 (271)
T ss_pred CcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCC-Cc--hh-
Confidence 221 1222221 26788888888887778899999999999863211 10 11
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc---CCCCee-eccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG---FGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~---~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
....+...++.|...++++++||++++|.++...... -..|.. ...|+..+++.||.+|.|.+.... + .
T Consensus 162 ----~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~~~~-e--~ 234 (271)
T cd01122 162 ----ERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQA-E--L 234 (271)
T ss_pred ----HHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEecCcc-c--c
Confidence 1122334455555555778999999999987532100 011222 245666799999999999975421 0 1
Q ss_pred ccccEEEEEEEecCCC
Q 017792 238 TIGSQIAVKIVKNKLA 253 (366)
Q Consensus 238 ~~g~~~~l~v~K~r~~ 253 (366)
.....+.+.+.|+|.+
T Consensus 235 ~~~~~~~i~v~K~R~~ 250 (271)
T cd01122 235 DERNTTYLRILKNRFT 250 (271)
T ss_pred ccCCcEEEEEEeeccC
Confidence 1123447999999986
No 45
>PRK09165 replicative DNA helicase; Provisional
Probab=99.86 E-value=3.6e-20 Score=186.40 Aligned_cols=227 Identities=22% Similarity=0.270 Sum_probs=155.0
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---------------CCeEEEEeCCCCCC
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---------------GGYCVFIDAEHALD 99 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~---------------gg~vl~id~e~~~~ 99 (366)
...++|||++.||.++| |+.+|+++.|.|+||+|||||+++++..+... +..|+|++.|++..
T Consensus 196 ~~~gi~TG~~~LD~~~g--G~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ 273 (497)
T PRK09165 196 HLSGISTGLRDLDSKLG--GLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAE 273 (497)
T ss_pred CCCcccCChHHHhhhcC--CCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHH
Confidence 46789999999999996 89999999999999999999999999887643 56899999999876
Q ss_pred HHH----HhhcccccCc-------------------------ceec--CCCCHHHHHHHHHHHHhcCCceEEEEeccccc
Q 017792 100 PSL----AETIGVKTEN-------------------------LLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 100 ~~~----~~~ig~~~~~-------------------------~~~~--~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l 148 (366)
+.. +...++...+ +++. ...+++++...+..+....+++++|||+++.+
T Consensus 274 ql~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli 353 (497)
T PRK09165 274 QLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLI 353 (497)
T ss_pred HHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhc
Confidence 422 2222332221 2222 23478888888888877778999999999977
Q ss_pred CCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeee-ccCCceeeeeceEEEEEE
Q 017792 149 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEV-TCGGNALKFYASVRLNIK 227 (366)
Q Consensus 149 ~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~-~~gG~~l~~~ad~~i~l~ 227 (366)
..... .. ++ .+......++..|+.| +++.+|+||+++|+++......-..|... ..++..|++.||.+++|.
T Consensus 354 ~~~~~-~~--~~-~r~~ev~~is~~LK~l---Akel~ipVi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 426 (497)
T PRK09165 354 RGSSK-RS--SD-NRVQEISEITQGLKAL---AKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGSIEQDADVVMFVY 426 (497)
T ss_pred cCCCC-CC--CC-chHHHHHHHHHHHHHH---HHHhCCeEEEeecccchhhccCCCCCchhhhhhccchhccCCEEEEEe
Confidence 53211 00 11 1112233344444444 46789999999999988654212234332 456777999999999999
Q ss_pred EeceeecCccc----------------cccEEEEEEEecCCCCCCCeeEEEEEeCCCCCchh
Q 017792 228 RIGLVKKGEET----------------IGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRES 273 (366)
Q Consensus 228 ~~~~~~~~~~~----------------~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~ 273 (366)
|...+...... ......+.|.|||.++. ..+.+.|.....++.
T Consensus 427 R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ivaKnR~G~~---g~~~~~f~~~~~~f~ 485 (497)
T PRK09165 427 REEYYLKRKEPREGTPKHEEWQEKMEKVHNKAEVIIAKQRHGPT---GTVKLAFESEFTRFG 485 (497)
T ss_pred ehhhhccccccccccchhhhhhhhhcccCCceEEEEeccCCCCC---eeEEEEEecCCCccc
Confidence 87655321100 01234788999999887 456666655554443
No 46
>PRK05636 replicative DNA helicase; Provisional
Probab=99.86 E-value=6.2e-20 Score=184.24 Aligned_cols=222 Identities=18% Similarity=0.166 Sum_probs=154.2
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCHHHHhh----cccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLAET----IGVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~~~~~~~~----ig~~ 109 (366)
...++|||++.||.+++ |+.+|+++.|.|+||+|||+|+++++..+.. .+..|+|++.|++..+...+. .++.
T Consensus 244 ~~~Gi~TG~~~LD~~t~--Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~ 321 (505)
T PRK05636 244 IATGIPTGFKDLDDLTN--GLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVR 321 (505)
T ss_pred CCCceecChHHHhhhcC--CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCC
Confidence 45789999999999875 9999999999999999999999999988764 467899999998765322111 1111
Q ss_pred c------------------------C-cceec--CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 110 T------------------------E-NLLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 110 ~------------------------~-~~~~~--~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
. + ++++. ...++.++...++.+.....+++||||+++.+.+.... . .
T Consensus 322 ~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~~~~~----~--~ 395 (505)
T PRK05636 322 LSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMSSGKRV----E--S 395 (505)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCCC----C--c
Confidence 1 1 22232 23478888888888777778999999999987531111 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeee-ccCCceeeeeceEEEEEEEeceeecCcccccc
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEV-TCGGNALKFYASVRLNIKRIGLVKKGEETIGS 241 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~-~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~ 241 (366)
....+....+.|...+++.+|+||+++|+++......-..|... ..++..|++.||.+++|.|...+....+..|.
T Consensus 396 ---r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~vl~l~R~~~y~~~~~~~g~ 472 (505)
T PRK05636 396 ---RQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLLYRPDSQDKDDERAGE 472 (505)
T ss_pred ---HHHHHHHHHHHHHHHHHHhCCeEEEEeecCccccccCCCCCcHHHHhhcccccccCCEEEEEecccccCCccCCCCc
Confidence 11234444455555557789999999999988654212223222 45567799999999999998766543333343
Q ss_pred EEEEEEEecCCCCCCCeeEEEEEeCCCCCc
Q 017792 242 QIAVKIVKNKLAPPFKTAQFELEFGKGISR 271 (366)
Q Consensus 242 ~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~ 271 (366)
..+.|.|||.++. ..+.+.|.....+
T Consensus 473 -~elivaK~RnG~~---Gtv~l~f~~~~~r 498 (505)
T PRK05636 473 -ADIILAKHRGGPI---DTVQVAHQLHYSR 498 (505)
T ss_pred -eEEEEecCCCCCC---ceEEEEeecCccc
Confidence 4789999999887 4566666555443
No 47
>PRK08006 replicative DNA helicase; Provisional
Probab=99.85 E-value=1.2e-19 Score=181.05 Aligned_cols=223 Identities=17% Similarity=0.206 Sum_probs=152.5
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCHHHHhhc----ccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLAETI----GVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~~~~~~~~i----g~~ 109 (366)
...++|||++.||.+++ |+.+|+++.|.|.||.|||+|+++++..+.. .+.+|+|++.|++..+...+-+ ++.
T Consensus 203 ~~~Gi~TG~~~LD~~~~--Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~ 280 (471)
T PRK08006 203 GVTGVNTGYDDLNKKTA--GLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVD 280 (471)
T ss_pred CCCcccCCCHHHHHhhc--CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCC
Confidence 46789999999999986 9999999999999999999999999988764 5778999999987553211111 111
Q ss_pred -------------------------c-CcceecC--CCCHHHHHHHHHHHHhcC-CceEEEEecccccCCCCccCCccch
Q 017792 110 -------------------------T-ENLLLAQ--PDCGEQALSLVDTLIRSG-SVDVVVVDSVAALVPKGELDGEMGD 160 (366)
Q Consensus 110 -------------------------~-~~~~~~~--~~~~e~~l~~~~~~~~~~-~~~lvviDsl~~l~~~~~l~~~~g~ 160 (366)
. .++++.. ..++.++...++.+.... .+++||||+++.+.... .. ..
T Consensus 281 ~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~-~~---~~ 356 (471)
T PRK08006 281 QTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPS-LS---DN 356 (471)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCC-CC---CC
Confidence 0 1223322 357888888887776654 68999999999875211 11 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCcccc
Q 017792 161 AHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEETI 239 (366)
Q Consensus 161 ~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~ 239 (366)
+......+++.|+.|+ ++.+|+||+++|+++..+...-..|.. -..++..|++-||.+++|.|...+....+..
T Consensus 357 --r~~ei~~isr~LK~lA---kel~ipVi~LsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~ 431 (471)
T PRK08006 357 --RTLEIAEISRSLKALA---KELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLK 431 (471)
T ss_pred --cHHHHHHHHHHHHHHH---HHhCCeEEEEEecCccccccCCCCCchhhhhhcCcccccCCEEEEEecccccccccCCC
Confidence 1122233444444444 678999999999999865422223322 2445667999999999999987665433333
Q ss_pred ccEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 240 GSQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 240 g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
|. ..+.|.|||.++. ..+.+.|.....++
T Consensus 432 g~-~elivaKnR~G~~---G~v~l~f~~~~~~f 460 (471)
T PRK08006 432 GI-AEIIIGKQRNGPI---GTVRLTFNGQWSRF 460 (471)
T ss_pred Cc-eEEEEecccCCCC---ceEEEEEccCcccc
Confidence 43 4788999999887 45566665554433
No 48
>PRK07004 replicative DNA helicase; Provisional
Probab=99.85 E-value=8.3e-20 Score=182.13 Aligned_cols=225 Identities=18% Similarity=0.182 Sum_probs=154.6
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEeCCCCCCHHHHhhc----cc
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALDPSLAETI----GV 108 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~-~~gg~vl~id~e~~~~~~~~~~i----g~ 108 (366)
....++|||++.||.+++ |+++|+++.|.|.||+|||+|+++++..+. ..+..|+|++.|++..+...+-+ ++
T Consensus 191 ~~~~gi~TG~~~LD~~t~--G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~~~v 268 (460)
T PRK07004 191 SDVTGTPTGFVDLDRMTS--GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSVGRL 268 (460)
T ss_pred CCCCCccCCcHHhccccc--CCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhhcCC
Confidence 346799999999999986 999999999999999999999999998775 45778999999988664222211 11
Q ss_pred ccC-------------------------cceec--CCCCHHHHHHHHHHHHhc-CCceEEEEecccccCCCCccCCccch
Q 017792 109 KTE-------------------------NLLLA--QPDCGEQALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGD 160 (366)
Q Consensus 109 ~~~-------------------------~~~~~--~~~~~e~~l~~~~~~~~~-~~~~lvviDsl~~l~~~~~l~~~~g~ 160 (366)
+.+ ++++. +..++.++...+..+.+. +.+++||||.++.+.+.. . ++
T Consensus 269 ~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~--~---~~ 343 (460)
T PRK07004 269 DQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSS--Q---GE 343 (460)
T ss_pred CHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCC--C---CC
Confidence 111 12222 234677888877777654 358999999998886321 1 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCcccc
Q 017792 161 AHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEETI 239 (366)
Q Consensus 161 ~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~ 239 (366)
. ....+....+.|...+++.+|+||+++|+++......-..|.. -..++..|++.||.++.|.|.+.+....+..
T Consensus 344 -~---r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~v~~l~R~~~y~~~~~~~ 419 (460)
T PRK07004 344 -N---RATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYNPDSPDK 419 (460)
T ss_pred -c---HHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcchhhhhcCCEEEEeccccccCCCcCCC
Confidence 1 1223444444555555778999999999998765421223322 1445667999999999999987664433333
Q ss_pred ccEEEEEEEecCCCCCCCeeEEEEEeCCCCCchh
Q 017792 240 GSQIAVKIVKNKLAPPFKTAQFELEFGKGISRES 273 (366)
Q Consensus 240 g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~ 273 (366)
|. ..+.|.|||.+++ +.+.+.|.....++.
T Consensus 420 g~-~e~ivaKnR~G~~---G~v~l~f~~~~~~F~ 449 (460)
T PRK07004 420 GT-AEIIIGKQRNGPI---GPVRLTFLGQYTKFD 449 (460)
T ss_pred Cc-eEEEEEccCCCCC---ceEEEEEecCCCccc
Confidence 43 4789999999988 456666666555443
No 49
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.85 E-value=6.7e-20 Score=168.43 Aligned_cols=206 Identities=18% Similarity=0.241 Sum_probs=139.5
Q ss_pred HHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHH----HhhcccccC--------
Q 017792 45 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSL----AETIGVKTE-------- 111 (366)
Q Consensus 45 ~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~----~~~ig~~~~-------- 111 (366)
+||.+++ |+++|+++.|.|+||+|||+|+++++..+... +.+++|++.|+...... +...+++..
T Consensus 2 ~LD~~~~--Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 79 (242)
T cd00984 2 DLDNLTG--GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLS 79 (242)
T ss_pred chhhhhc--CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCC
Confidence 5899886 99999999999999999999999999988877 88999999998765322 122333221
Q ss_pred -----------------ccee--cCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHH
Q 017792 112 -----------------NLLL--AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 172 (366)
Q Consensus 112 -----------------~~~~--~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~ 172 (366)
++.+ ....+++++...+..+....++++||||+++.+.... .. .+ ....+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~--~~--~~-----~~~~~~~ 150 (242)
T cd00984 80 DEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK--KK--GN-----RQQEVAE 150 (242)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC--CC--CC-----HHHHHHH
Confidence 1111 1235778888888888777799999999999876321 10 11 1122333
Q ss_pred HHHHHHHHhhhcCcEEEEEecCCcccccccCCCCe-eeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecC
Q 017792 173 ALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPT-EVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNK 251 (366)
Q Consensus 173 ~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~-~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r 251 (366)
.++.|...++++|+++|+++|.++.........|. ....|+..+++.||.++.|.+........ .......+.+.|||
T Consensus 151 ~~~~L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~~~~~~~~~-~~~~~~~l~v~KnR 229 (242)
T cd00984 151 ISRSLKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDEYYNKES-ESKGIAEIIVAKNR 229 (242)
T ss_pred HHHHHHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEeccccccccc-CCCCceEEEEECCC
Confidence 44455555577899999999998753221112221 12345566899999999999875433211 12234589999999
Q ss_pred CCCCCCeeEEEEEe
Q 017792 252 LAPPFKTAQFELEF 265 (366)
Q Consensus 252 ~~~~~~~~~~~i~~ 265 (366)
+++. ....+.|
T Consensus 230 ~G~~---g~~~l~~ 240 (242)
T cd00984 230 NGPT---GTVELRF 240 (242)
T ss_pred CCCC---eeEEEEe
Confidence 9876 3444544
No 50
>PRK08506 replicative DNA helicase; Provisional
Probab=99.84 E-value=2.8e-19 Score=179.01 Aligned_cols=224 Identities=21% Similarity=0.252 Sum_probs=152.6
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHH----Hhhccccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSL----AETIGVKT 110 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~----~~~ig~~~ 110 (366)
...++|||++.||.+++ |+.+|+++.|.|+||+|||+|+++++..+...+..|+|++.|++..+.. +...++.+
T Consensus 171 ~~~Gi~TG~~~LD~~~~--G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~ 248 (472)
T PRK08506 171 DIIGLDTGFVELNKMTK--GFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSIPL 248 (472)
T ss_pred CCCcccCChHHHHhhcC--CCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCCCH
Confidence 46789999999999875 9999999999999999999999999999887788999999998765322 11122221
Q ss_pred C-------------------------cceecC--CCCHHHHHHHHHHHHhc-CCceEEEEecccccCCCCccCCccchhh
Q 017792 111 E-------------------------NLLLAQ--PDCGEQALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 111 ~-------------------------~~~~~~--~~~~e~~l~~~~~~~~~-~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
+ ++++.. ..++.++...++.+... +.++++|||+++.+....... .
T Consensus 249 ~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~----~-- 322 (472)
T PRK08506 249 QNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFK----D-- 322 (472)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCC----C--
Confidence 1 222322 34788888888877654 358999999998775211111 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCcc----
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEE---- 237 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~---- 237 (366)
+......+++.|+.|+ ++.+|+||+++|.++......-..|.. -..++.+|++.||.++.+.|...+...++
T Consensus 323 r~~ev~~isr~LK~lA---kel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~~~~~~~~~ 399 (472)
T PRK08506 323 RHLQISEISRGLKLLA---RELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDDVYKEREEKEKE 399 (472)
T ss_pred HHHHHHHHHHHHHHHH---HHhCCcEEEEeecCcchhhccCCCCChHHhhcchhhhhcCCEEEEEecccccccccccccc
Confidence 1122233444555555 678999999999998764321223322 24556779999999999999865532110
Q ss_pred ----ccc-------------cEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 238 ----TIG-------------SQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 238 ----~~g-------------~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
..| ....+.|.|||.+++ ..+.+.|.....++
T Consensus 400 ~~~~~~g~~~~~~~~~~~~~~~~eliiaKnR~G~~---G~v~l~f~~~~~~f 448 (472)
T PRK08506 400 KKAKKEGKEERRIHFQNKSIEEAEIIIGKNRNGPT---GTVKLRFQKEFTRF 448 (472)
T ss_pred cccccccccccccccccccccceEEEEecCCCCCC---ceEEEEEecCCccc
Confidence 012 125789999999887 45566665555444
No 51
>PRK08840 replicative DNA helicase; Provisional
Probab=99.84 E-value=5.8e-19 Score=175.87 Aligned_cols=223 Identities=17% Similarity=0.172 Sum_probs=152.1
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCHHHHhh----cccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLAET----IGVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~~~~~~~~----ig~~ 109 (366)
...++|||++.||.+++ |+.+|+++.|.|.||.|||+|++.++..+.. .+.+|+|++.|++..+...+- -++.
T Consensus 196 ~~~gi~TG~~~LD~~~~--G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~Rlla~~s~v~ 273 (464)
T PRK08840 196 GVTGVDTGFTDLNKKTA--GLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASLSRVD 273 (464)
T ss_pred CCCCcCCCcHHHHHhhc--CCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHhhCCCC
Confidence 46789999999999986 8999999999999999999999999998864 467899999998765321111 1111
Q ss_pred c------------------------C--cceec--CCCCHHHHHHHHHHHHhcC-CceEEEEecccccCCCCccCCccch
Q 017792 110 T------------------------E--NLLLA--QPDCGEQALSLVDTLIRSG-SVDVVVVDSVAALVPKGELDGEMGD 160 (366)
Q Consensus 110 ~------------------------~--~~~~~--~~~~~e~~l~~~~~~~~~~-~~~lvviDsl~~l~~~~~l~~~~g~ 160 (366)
. + ++++. ...++.++...+..+.... .+++||||+++.+.... .. ..
T Consensus 274 ~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~-~~---~~ 349 (464)
T PRK08840 274 QTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPA-LS---DN 349 (464)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCC-CC---Cc
Confidence 1 1 22332 2357788888887776553 58999999999875211 11 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeee-ccCCceeeeeceEEEEEEEeceeecCcccc
Q 017792 161 AHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEV-TCGGNALKFYASVRLNIKRIGLVKKGEETI 239 (366)
Q Consensus 161 ~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~-~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~ 239 (366)
....+....+.|...+++.+|+||+++|+++......-..|... ..++..|++-||.+++|.|...+....+..
T Consensus 350 -----r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~ 424 (464)
T PRK08840 350 -----RTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNPDSPLK 424 (464)
T ss_pred -----hHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEecccccCCCcCCC
Confidence 11223334444444446789999999999987654222234222 455677999999999999987654433333
Q ss_pred ccEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 240 GSQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 240 g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
| ...+.|.|||.++.+ .+.+.|.....++
T Consensus 425 ~-~~elivaKnR~G~~G---~v~l~f~~~~~~f 453 (464)
T PRK08840 425 G-TAEIIIGKQRNGPIG---SVRLTFQGQYSRF 453 (464)
T ss_pred C-ceEEEEecccCCCCc---eEEEEEecCcccc
Confidence 4 347889999999874 4555655544433
No 52
>PRK06904 replicative DNA helicase; Validated
Probab=99.84 E-value=5.6e-19 Score=176.43 Aligned_cols=225 Identities=19% Similarity=0.232 Sum_probs=153.2
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCHHHHhhc----cc
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLAETI----GV 108 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~~~~~~~~i----g~ 108 (366)
....++|||++.||.+++ |+.+|+++.|.|.||+|||+|++.++..+.. .+.+|+|++.|++..+...+-+ ++
T Consensus 199 ~~~~Gi~TG~~~LD~~t~--Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rlla~~s~v 276 (472)
T PRK06904 199 NGVTGVTTGFTDLDKKTA--GLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASLSRV 276 (472)
T ss_pred CCCCCccCChHHHHHHHh--ccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhCCC
Confidence 356789999999999986 9999999999999999999999999988865 4778999999987653221111 11
Q ss_pred c---------------------------cCcceecC--CCCHHHHHHHHHHHHhc-CCceEEEEecccccCCCCccCCcc
Q 017792 109 K---------------------------TENLLLAQ--PDCGEQALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEM 158 (366)
Q Consensus 109 ~---------------------------~~~~~~~~--~~~~e~~l~~~~~~~~~-~~~~lvviDsl~~l~~~~~l~~~~ 158 (366)
+ ..++++.. ..++.++...+..+... +.++++|||+++.+... ...+
T Consensus 277 ~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~-~~~~-- 353 (472)
T PRK06904 277 DQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAP-GFED-- 353 (472)
T ss_pred CHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCC-CCCC--
Confidence 0 01133322 35778888877776654 36899999999877521 1111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeee-ccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 159 GDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEV-TCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 159 g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~-~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
.+......+++.|+.|+ ++.+|+||+++|+++.+....-..|... ..++.+|++.||.+++|.|...+....+
T Consensus 354 ---~r~~ei~~isr~LK~lA---kel~ipVi~lsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~ 427 (472)
T PRK06904 354 ---NRTLEIAEISRSLKALA---KELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLIMFIYRDEVYNETTE 427 (472)
T ss_pred ---cHHHHHHHHHHHHHHHH---HHhCCeEEEEEecCchhhccCCCCCchHHHhhcCccccCCcEEEEEeccccccCccc
Confidence 11122233444455554 6789999999999887654222234221 4556779999999999999876543322
Q ss_pred c-cccEEEEEEEecCCCCCCCeeEEEEEeCCCCCchh
Q 017792 238 T-IGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRES 273 (366)
Q Consensus 238 ~-~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~ 273 (366)
. .| ...+.|.|||.++. ..+.+.|.....++.
T Consensus 428 ~~~~-~~elivaKnR~G~~---G~v~l~f~~~~~~f~ 460 (472)
T PRK06904 428 DNKG-VAEIIIGKQRNGPI---GRVRLAFQGQYSRFD 460 (472)
T ss_pred cCCC-ceEEEEeccCCCCC---ceEEEEEccCCCCcc
Confidence 1 23 34789999999887 456666655554443
No 53
>PRK06321 replicative DNA helicase; Provisional
Probab=99.83 E-value=3.6e-19 Score=177.50 Aligned_cols=226 Identities=16% Similarity=0.158 Sum_probs=155.2
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCHHHHhhc----cc
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLAETI----GV 108 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~~~~~~~~i----g~ 108 (366)
....++|||++.||.+++ |+++|+++.|.|+||+|||+|+++++..+.. .+..|+|++.|++..+...+-+ ++
T Consensus 204 ~~~~Gi~tG~~~LD~~t~--Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~~s~v 281 (472)
T PRK06321 204 PMISGIPTHFIDLDKMIN--GFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEV 281 (472)
T ss_pred CCCCccccCcHHHHHHhc--CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhcCC
Confidence 346799999999999997 9999999999999999999999999988764 4778999999987653221111 12
Q ss_pred ccC-------------------------cceec--CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchh
Q 017792 109 KTE-------------------------NLLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 109 ~~~-------------------------~~~~~--~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
+.. ++++. ...+++++...+..+....+++++|||+++.+........ .+
T Consensus 282 ~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~--~~- 358 (472)
T PRK06321 282 ESKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNLRN--SE- 358 (472)
T ss_pred CHHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCccCC--cc-
Confidence 111 11222 2347888888888887777899999999988752111111 11
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCccccc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g 240 (366)
.+...+....+.|...+++.+++||+++|.++..+...-..|.. -..++.+|++.||.+++|.|.+.+...+ ..|
T Consensus 359 ---~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLReSG~IEqdAD~v~~l~R~~~y~~~~-~~~ 434 (472)
T PRK06321 359 ---SRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIEQDSDLVMFLLRREYYDPND-KPG 434 (472)
T ss_pred ---hHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHHhhcccccccCCEEEEEechhhcCCcC-CCC
Confidence 11223444444555555678999999999988765421122321 1455677999999999999876554322 223
Q ss_pred cEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 241 ~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
...+.|.|||.++.+ .+.+.|.....++
T Consensus 435 -~~elivaKnR~G~~G---~v~l~f~~~~~~f 462 (472)
T PRK06321 435 -TAELIVAKNRHGSIG---SVPLVFEKEFARF 462 (472)
T ss_pred -ceEEEEEecCCCCCc---eEEEEEecCCCcc
Confidence 357999999998874 5566665555444
No 54
>PRK06749 replicative DNA helicase; Provisional
Probab=99.82 E-value=1.7e-18 Score=171.09 Aligned_cols=222 Identities=18% Similarity=0.161 Sum_probs=149.9
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhc----ccc
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETI----GVK 109 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~i----g~~ 109 (366)
....++|||++.||.+++ |+.+|+++.|.|.||.|||+|+++++..+...+..|+|++.|++..+...+-+ +++
T Consensus 164 ~~~~Gi~TG~~~LD~~t~--Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~ql~~R~ls~~~~i~ 241 (428)
T PRK06749 164 KEITGIETGYTSLNKMTC--GLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQLLKRMASCVGEVS 241 (428)
T ss_pred CCCCCccCCcHHHHHHhC--CCCCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHhccCCC
Confidence 346789999999999876 99999999999999999999999999999877778999999987653221111 111
Q ss_pred cC---------------------------cceec--CCCCHHHHHHHHHHHHhcCC--ceEEEEecccccCCCCccCCcc
Q 017792 110 TE---------------------------NLLLA--QPDCGEQALSLVDTLIRSGS--VDVVVVDSVAALVPKGELDGEM 158 (366)
Q Consensus 110 ~~---------------------------~~~~~--~~~~~e~~l~~~~~~~~~~~--~~lvviDsl~~l~~~~~l~~~~ 158 (366)
.. ++++. ...++.++...++.+.+... ..+||||+++.+.....- .
T Consensus 242 ~~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i~d~~~~t~~~I~~~~r~~~~~~~~~~~lvvIDyLqli~~~~~~-~-- 318 (428)
T PRK06749 242 GGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKILIIVDYLQLITGDPKH-K-- 318 (428)
T ss_pred HHHHhcCcccCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeChhhcCCCCCC-C--
Confidence 10 11222 22467777777777765544 459999999877521110 0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 159 GDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 159 g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
+. ....+....+.|...+++.+|+||+++|+++......-..|.. -..++..+++.||.+++|.|...+....+
T Consensus 319 ~~-----r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~SG~IEqdAD~vl~l~R~~~y~~~~~ 393 (428)
T PRK06749 319 GN-----RFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYREDYYDKETM 393 (428)
T ss_pred CC-----HHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEeeccccccccc
Confidence 11 1223334444444445678999999999998765421123321 13456679999999999999876643332
Q ss_pred ccccEEEEEEEecCCCCCCCeeEEEEEeCCCC
Q 017792 238 TIGSQIAVKIVKNKLAPPFKTAQFELEFGKGI 269 (366)
Q Consensus 238 ~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi 269 (366)
..+ ...+.|.|||.++++ .+.+.|....
T Consensus 394 ~~~-~~eliiaKnR~G~~G---~v~~~f~~~~ 421 (428)
T PRK06749 394 QKE-MTEIHVAKHRNGPVG---SFKLRFLKEF 421 (428)
T ss_pred CCC-ceEEEEecCCCCCCc---eEEEEEecCc
Confidence 223 347889999998874 5566554443
No 55
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.82 E-value=6.9e-19 Score=160.52 Aligned_cols=204 Identities=19% Similarity=0.267 Sum_probs=136.7
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCcc
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL 113 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~~ 113 (366)
+..|.+++..||..++ ||+|+|++++|.|+||||||||+.+++....+.+.+++|++++++... ..++++|++.+..
T Consensus 3 ~~~~~~~~~~ld~~l~-ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~ 81 (230)
T PRK08533 3 LAKIELSRDELHKRLG-GGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKK 81 (230)
T ss_pred eEEEEEEEeeeehhhC-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHH
Confidence 4578899999999999 999999999999999999999999998888778889999999887764 2345677765432
Q ss_pred ------eec---CCC-C---HHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHH
Q 017792 114 ------LLA---QPD-C---GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180 (366)
Q Consensus 114 ------~~~---~~~-~---~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~ 180 (366)
.+. +.. . .+..+..+.......+++++++|+++.... ... +. ...+.+.+.++.+
T Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~-~~~-----d~---~~~~~l~~~l~~l--- 149 (230)
T PRK08533 82 LISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLIS-NDA-----SE---VAVNDLMAFFKRI--- 149 (230)
T ss_pred hhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhc-CCc-----ch---HHHHHHHHHHHHH---
Confidence 111 111 1 133333333344445789999999998752 111 11 1123333334333
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCC--Ce
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPF--KT 258 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~--~~ 258 (366)
++.|+++++++|.... .. .. . ..++|+||.+|.|+... .+. ..++.+.|+|.|..++. ..
T Consensus 150 -~~~g~tvi~t~~~~~~-~~-------~~-~--~~~~~~~DgvI~L~~~~---~~~---~~~R~i~V~KmR~~~~~~~~~ 211 (230)
T PRK08533 150 -SSLNKVIILTANPKEL-DE-------SV-L--TILRTAATMLIRLEVKV---FGG---DLKNSAKIVKYNMAKGSFQKS 211 (230)
T ss_pred -HhCCCEEEEEeccccc-cc-------cc-c--eeEEEeeeEEEEEEEee---cCC---EEEEEEEEEEecCCccccCCE
Confidence 4558888777664421 10 01 1 13899999999998653 111 13447999999986553 47
Q ss_pred eEEEEEeCCCCC
Q 017792 259 AQFELEFGKGIS 270 (366)
Q Consensus 259 ~~~~i~~~~Gi~ 270 (366)
.+|++..+.|+.
T Consensus 212 ~~f~i~~~~g~~ 223 (230)
T PRK08533 212 IPFRVEPKIGLA 223 (230)
T ss_pred EEEEEcCCccEE
Confidence 889998777875
No 56
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=7.6e-18 Score=163.87 Aligned_cols=241 Identities=18% Similarity=0.196 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 5 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
.+++..++++|++.|.++ . +.++|||++.||.+++ |+.+|+++.+.|.||.|||+||+.++.+++.
T Consensus 157 ~~~l~~~~~~i~~~~~~~-----------~-~~Gi~tgf~~LD~~t~--G~~~~dLii~AaRP~mGKTafalnia~n~a~ 222 (435)
T COG0305 157 GDLLKETMDEIEARFENG-----------G-LIGVPTGFTDLDEITS--GFRPGDLIIVAARPGMGKTALALNIALNAAA 222 (435)
T ss_pred HHHHHHHHHHHHHHhccC-----------C-CcccccCchhhHHHhc--CCccCCEEEEccCCCCChHHHHHHHHHHHHH
Confidence 467889999999988753 2 7899999999999998 7999999999999999999999999999886
Q ss_pred c-CCeEEEEeCCCCCCHHHHhhc----ccccC-------------------------cceec--CCCCHHHHHHHHHHHH
Q 017792 85 Q-GGYCVFIDAEHALDPSLAETI----GVKTE-------------------------NLLLA--QPDCGEQALSLVDTLI 132 (366)
Q Consensus 85 ~-gg~vl~id~e~~~~~~~~~~i----g~~~~-------------------------~~~~~--~~~~~e~~l~~~~~~~ 132 (366)
. ...|.+++.|++.++...+-+ +++.. .+++. +..+..++...++++.
T Consensus 223 ~~~~~v~iFSLEM~~eql~~R~Ls~~s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk 302 (435)
T COG0305 223 DGRKPVAIFSLEMSEEQLVMRLLSSESGIESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLK 302 (435)
T ss_pred hcCCCeEEEEccCCHHHHHHHhhccccccchhccccccccHHHHHHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHH
Confidence 5 556899999987664322222 11111 11121 2347788888888888
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-ecc
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTC 211 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~ 211 (366)
+...+.++++|+++.+.... .. . .+...++..-+.|...+++.+++||..+|.++.++...-..|.. -..
T Consensus 303 ~~~~l~~i~iDYLqLm~~~~-~~-----~---~r~qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~R~dkrP~lSDLR 373 (435)
T COG0305 303 LKHNLGLIVIDYLQLMTGGK-KS-----E---NRKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLR 373 (435)
T ss_pred HhcCccEEEEEEEEeecccc-cc-----h---hHHHHHHHHHHHHHHHHHhcCCcEEehhhhcccchhccccCCccccCc
Confidence 88889999999999887311 11 1 22334444445555555778999999999999887642222321 133
Q ss_pred CCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 212 GGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 212 gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
...++++-||.++++.+.+.+....+..|. ..+.|.|||.+|. ..+.+.|.....++
T Consensus 374 ESGsIEQDAD~VmflyRde~y~~~~~~~g~-aeiIi~K~RnGp~---GtV~l~f~~~~~~F 430 (435)
T COG0305 374 ESGALEQDADIVIFLHRDEAYLKDTPDRGE-AEVIVAKNRNGPT---GTVKLAFDPQFTKF 430 (435)
T ss_pred cCCchhhhCCEEEEEechhhccCCCCCCce-EEEEEEeccCCCC---ceEEEEEecccccc
Confidence 455799999999999999877766555454 4788999999887 45557776665544
No 57
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.79 E-value=8e-18 Score=156.51 Aligned_cols=208 Identities=26% Similarity=0.389 Sum_probs=146.5
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCcc
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL 113 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~~ 113 (366)
++++|||++.||.+|+ ||+|+|++++|+|+||||||+|+.|++......|.+|+|++.++.... ..+.++|++++..
T Consensus 2 ~~~~~TGI~glD~~l~-GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~ 80 (260)
T COG0467 2 MERIPTGIPGLDEILG-GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVY 80 (260)
T ss_pred CccccCCCcchHHHhc-CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHH
Confidence 5689999999999999 999999999999999999999999999999999999999999987764 3455678776421
Q ss_pred e------e--------------c-CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHH
Q 017792 114 L------L--------------A-QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 172 (366)
Q Consensus 114 ~------~--------------~-~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~ 172 (366)
. + . .+...+.+...+...+.......+|+||+..+.- .+.. . ...| .
T Consensus 81 ~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~--~~~~----~---~~~r---~ 148 (260)
T COG0467 81 IEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTL--YLND----P---ALVR---R 148 (260)
T ss_pred hhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhh--hcCc----h---HHHH---H
Confidence 1 1 0 1234556677777777777789999999996541 1111 0 1223 3
Q ss_pred HHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCC
Q 017792 173 ALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKL 252 (366)
Q Consensus 173 ~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~ 252 (366)
.+..+...+++.++|.+++++....... .. ....+.+|.+|.|+.... .+ ...+..+.+.|.|.
T Consensus 149 ~~~~l~~~~~~~~~t~~~~~~~~~~~~~-------~~----~~~~~~vdgvI~l~~~~~--~~---~~~r~~~~i~k~r~ 212 (260)
T COG0467 149 ILLLLKRFLKKLGVTSLLTTEAPVEERG-------ES----GVEEYIVDGVIRLDLKEI--EG---GGDRRYLRILKMRG 212 (260)
T ss_pred HHHHHHHHHHhCCCEEEEEecccccCCC-------cc----ceEEEEEEEEEEEeeecc--cC---ceEEEEEEEEeccc
Confidence 4555555556778999999886432110 00 225669999999986431 11 12232788999997
Q ss_pred CCC-CCeeEEEEEeCCCCCch
Q 017792 253 APP-FKTAQFELEFGKGISRE 272 (366)
Q Consensus 253 ~~~-~~~~~~~i~~~~Gi~~~ 272 (366)
.++ .....|.|.-+.|+...
T Consensus 213 ~~~~~~~~~~~i~~g~gi~i~ 233 (260)
T COG0467 213 TPHSLKVIPFEITDGEGIVVY 233 (260)
T ss_pred cccCCceeceEEecCCcEEEe
Confidence 554 36778888844676543
No 58
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.74 E-value=5.7e-18 Score=148.39 Aligned_cols=160 Identities=20% Similarity=0.264 Sum_probs=117.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+.+|+++.|+||+|||||||++++.++-.+++|. ++++++.... ..+++++|+++|++.+++..|+-+++.....
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~-I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGS-ITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCce-EEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 6799999999999999999999998888888886 8888865533 3567889999999999999888776544322
Q ss_pred HHhcC-----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 131 LIRSG-----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 131 ~~~~~-----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
.+... -...+-+-.-...+| ..++| |++|+..+||+++.. +..+.+
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-~qLSG--GQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~ 180 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYP-AQLSG--GQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK 180 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-cccCc--HHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHH
Confidence 11110 011222233334443 66777 999999999998654 556666
Q ss_pred HhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 180 SLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 180 ~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
.|.+.|.|+|++||.+.- ....||++++|+++.++.+++
T Consensus 181 ~LA~eGmTMivVTHEM~F------------------Ar~VadrviFmd~G~iie~g~ 219 (240)
T COG1126 181 DLAEEGMTMIIVTHEMGF------------------AREVADRVIFMDQGKIIEEGP 219 (240)
T ss_pred HHHHcCCeEEEEechhHH------------------HHHhhheEEEeeCCEEEEecC
Confidence 677889999999996642 345789999999987666653
No 59
>PRK05973 replicative DNA helicase; Provisional
Probab=99.73 E-value=4.3e-17 Score=148.14 Aligned_cols=167 Identities=22% Similarity=0.291 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 017792 7 ALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG 86 (366)
Q Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g 86 (366)
-|+.|+|+|....|-.+|-.+.... ... |. +|.+. ||+++|+++.|.|+||+|||+|+++++......|
T Consensus 24 ~~~~~~~~~a~~~g~~~w~~~~~~~----~~~--~p---~~~l~--GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~G 92 (237)
T PRK05973 24 PLHEALDRIAAEEGFSSWSLLAAKA----AAT--TP---AEELF--SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSG 92 (237)
T ss_pred cHHHHHHHHHHHhccchHHHHHHhc----cCC--CC---HHHhc--CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 3889999999999998887765421 111 22 56644 6999999999999999999999999999888888
Q ss_pred CeEEEEeCCCCCCH--HHHhhcccccCcc----ee--cCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCcc
Q 017792 87 GYCVFIDAEHALDP--SLAETIGVKTENL----LL--AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEM 158 (366)
Q Consensus 87 g~vl~id~e~~~~~--~~~~~ig~~~~~~----~~--~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~ 158 (366)
.+|+|++.|++.+. .++..+|++.++. .+ ..+.+.++++ ..+....+.++|||||++.+.. ....
T Consensus 93 e~vlyfSlEes~~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~~~ii---~~l~~~~~~~lVVIDsLq~l~~--~~~~-- 165 (237)
T PRK05973 93 RTGVFFTLEYTEQDVRDRLRALGADRAQFADLFEFDTSDAICADYII---ARLASAPRGTLVVIDYLQLLDQ--RREK-- 165 (237)
T ss_pred CeEEEEEEeCCHHHHHHHHHHcCCChHHhccceEeecCCCCCHHHHH---HHHHHhhCCCEEEEEcHHHHhh--cccc--
Confidence 89999999998764 4456678776543 11 1223444433 3344445679999999998752 1110
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccc
Q 017792 159 GDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLST 200 (366)
Q Consensus 159 g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~ 200 (366)
. .+...++.|...+++.|+|||+++|..+..+.
T Consensus 166 --~-------el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~ 198 (237)
T PRK05973 166 --P-------DLSVQVRALKSFARERGLIIVFISQIDRSFDP 198 (237)
T ss_pred --h-------hHHHHHHHHHHHHHhCCCeEEEEecCcccccc
Confidence 0 12234556666778899999999999887554
No 60
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.71 E-value=3e-17 Score=147.09 Aligned_cols=153 Identities=21% Similarity=0.240 Sum_probs=108.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-----HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-----PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-----~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
|++|+++.|.||+|||||||+..+.+...+.+|. +++++.+.. + ..+.+.+|+++|+..+.+..|+.|++..
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~-v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE-VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce-EEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence 7899999999999999999988777777776665 566654322 1 2457789999999999999999998875
Q ss_pred HHHHHhcCC----------ceEEEEecccc-cCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 128 VDTLIRSGS----------VDVVVVDSVAA-LVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 128 ~~~~~~~~~----------~~lvviDsl~~-l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
-..+..... ...+-+..... -. ..+++| |++|+...||+++.. +..
T Consensus 107 pl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~-p~eLSG--GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ 183 (226)
T COG1136 107 PLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKK-PSELSG--GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE 183 (226)
T ss_pred HHHHcCCChhHHHHHHHHHHHhcCChhhhccCC-chhcCH--HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHH
Confidence 221111000 11111221112 22 356777 999999999998764 444
Q ss_pred HHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEec
Q 017792 177 LSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 230 (366)
Q Consensus 177 L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~ 230 (366)
+...+ ++.|+|||++||... ++.+||++|.++.+.
T Consensus 184 ll~~~~~~~g~tii~VTHd~~-------------------lA~~~dr~i~l~dG~ 219 (226)
T COG1136 184 LLRELNKERGKTIIMVTHDPE-------------------LAKYADRVIELKDGK 219 (226)
T ss_pred HHHHHHHhcCCEEEEEcCCHH-------------------HHHhCCEEEEEeCCe
Confidence 44444 567999999999653 667899999998765
No 61
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.71 E-value=2.4e-17 Score=147.51 Aligned_cols=161 Identities=21% Similarity=0.232 Sum_probs=121.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
-|+.|++++++||+||||||+++++..++.+..|. ++++++...+ ..+++++||+.|.+-+++..|+.+++..+..
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~-I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~ 101 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGE-ILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPK 101 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhcccCCCCce-EEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhh
Confidence 37899999999999999999999999999998887 7888887655 4788999999999999999999999887765
Q ss_pred HHhcC----------CceEEEEec--ccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 131 LIRSG----------SVDVVVVDS--VAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 131 ~~~~~----------~~~lvviDs--l~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
+..-. -..++-+|. ...-+ ..+++| |++|+...+|+++.. |....
T Consensus 102 L~~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-P~eLSG--GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~ 178 (309)
T COG1125 102 LLGWDKERIKKRADELLDLVGLDPSEYADRY-PHELSG--GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEI 178 (309)
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcC-chhcCc--chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHH
Confidence 43211 123333443 23333 266777 999999999998764 33322
Q ss_pred HHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 179 HSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 179 ~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
..+ ++.+.||||++|..++ .-.++|++..|+.++++.-+.
T Consensus 179 ~~lq~~l~kTivfVTHDidE------------------A~kLadri~vm~~G~i~Q~~~ 219 (309)
T COG1125 179 KELQKELGKTIVFVTHDIDE------------------ALKLADRIAVMDAGEIVQYDT 219 (309)
T ss_pred HHHHHHhCCEEEEEecCHHH------------------HHhhhceEEEecCCeEEEeCC
Confidence 222 4579999999998876 445788888888877655443
No 62
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.69 E-value=2.9e-17 Score=150.04 Aligned_cols=162 Identities=20% Similarity=0.279 Sum_probs=113.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
-+++|++++|.||||||||||++.+++.+.+..|. +++++....+ +.+++.++|.+|......+.++.+++..-+.
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~-V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~ 102 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE-VLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY 102 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCE-EEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCC
Confidence 37899999999999999999999999999988886 7888876544 5789999999998755544454444332111
Q ss_pred H----Hh-cCC---------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 131 L----IR-SGS---------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 131 ~----~~-~~~---------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
- .. ... ...+-+..+..- +-.+++| |++|+...||++++. +..
T Consensus 103 p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-~~~~LSG--GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ 179 (258)
T COG1120 103 PHLGLFGRPSKEDEEIVEEALELLGLEHLADR-PVDELSG--GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLE 179 (258)
T ss_pred cccccccCCCHhHHHHHHHHHHHhCcHHHhcC-cccccCh--hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHH
Confidence 0 00 000 001111122211 1356666 899999999998886 444
Q ss_pred HHHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 177 LSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 177 L~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
+.+.+. +.|.|||++.|...- ...|||.++.|++++++..|.+
T Consensus 180 ll~~l~~~~~~tvv~vlHDlN~------------------A~ryad~~i~lk~G~i~a~G~p 223 (258)
T COG1120 180 LLRDLNREKGLTVVMVLHDLNL------------------AARYADHLILLKDGKIVAQGTP 223 (258)
T ss_pred HHHHHHHhcCCEEEEEecCHHH------------------HHHhCCEEEEEECCeEEeecCc
Confidence 444444 679999999996643 5668999999999988888764
No 63
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.69 E-value=5.9e-16 Score=135.39 Aligned_cols=201 Identities=23% Similarity=0.330 Sum_probs=142.9
Q ss_pred cccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCcce-
Q 017792 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENLL- 114 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~~~- 114 (366)
.+++|.++||+-|| ||+|-|+++.|-|++|+|||-|+.+++..+...+.++.|+++|.+... ...+.++++..+.+
T Consensus 9 ii~~gndelDkrLG-GGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l 87 (235)
T COG2874 9 IIKSGNDELDKRLG-GGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLL 87 (235)
T ss_pred hccCCcHHHHhhcc-CCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHh
Confidence 58999999999999 999999999999999999999999999999999999999999987654 23455666554322
Q ss_pred -----ecC---------CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHH
Q 017792 115 -----LAQ---------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180 (366)
Q Consensus 115 -----~~~---------~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~ 180 (366)
+++ +.....+++.+....+..+.++++|||++...... +. ..+..+...+++|.
T Consensus 88 ~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-------~~---~~vl~fm~~~r~l~-- 155 (235)
T COG2874 88 SGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-------SE---DAVLNFMTFLRKLS-- 155 (235)
T ss_pred cceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-------cH---HHHHHHHHHHHHHH--
Confidence 221 22345677777777777789999999999887322 11 12333444455554
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC--CCe
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP--FKT 258 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~--~~~ 258 (366)
..|.+||++-|...- .. .+. ..+...||..+.|+..++ |.+ .+..+.++|-|.++- ++.
T Consensus 156 --d~gKvIilTvhp~~l------~e--~~~---~rirs~~d~~l~L~~~~~---Gg~---~~~~~~i~K~~ga~~s~~~~ 216 (235)
T COG2874 156 --DLGKVIILTVHPSAL------DE--DVL---TRIRSACDVYLRLRLEEL---GGD---LIKVLEIVKYRGARKSFQNI 216 (235)
T ss_pred --hCCCEEEEEeChhhc------CH--HHH---HHHHHhhheeEEEEhhhh---CCe---eeEEEEEeeecCchhhcCCc
Confidence 579999999996542 11 111 126778999999886431 211 233688899887643 346
Q ss_pred eEEEEEeCCCCC
Q 017792 259 AQFELEFGKGIS 270 (366)
Q Consensus 259 ~~~~i~~~~Gi~ 270 (366)
..|++..+.|+.
T Consensus 217 I~F~V~P~~Glk 228 (235)
T COG2874 217 ISFRVEPGFGLK 228 (235)
T ss_pred eeEEecCCCceE
Confidence 788887766764
No 64
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=99.68 E-value=2.8e-17 Score=154.59 Aligned_cols=220 Identities=30% Similarity=0.458 Sum_probs=152.4
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH----HHHhhccccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP----SLAETIGVKT 110 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~----~~~~~ig~~~ 110 (366)
....++||+.+||.+|+ ||++.|.+++|+||||+|||.||..++....--++.++|+|.+..+.. ..+.+.+...
T Consensus 89 ~~~~l~Tg~~~lD~lL~-gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~~~~~~~~~ia~~~~~~~ 167 (326)
T KOG1433|consen 89 ELGFLSTGSKALDKLLG-GGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTEIAGRSGLRG 167 (326)
T ss_pred cceeeccchhhhhHhhc-cCcccCceeEEecCCCccHHHHHHHHHHhccCCcceEEEEecchhcccchhhhhhhhhhhhh
Confidence 45689999999999999 999999999999999999999998777766333568999999985442 3344444332
Q ss_pred C----cceecCCCCHHHHHHH---HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhh
Q 017792 111 E----NLLLAQPDCGEQALSL---VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183 (366)
Q Consensus 111 ~----~~~~~~~~~~e~~l~~---~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~ 183 (366)
. ++.+......++.+.. +..........++++||..+.. +..+.+ .++. ....+.++..++.+.+...+
T Consensus 168 ~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~-~~~~~g-~~~~--~a~~~~~~~~~~~l~~la~~ 243 (326)
T KOG1433|consen 168 RDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALY-RTTFKG-RGEL--SARQMLLAKFLRSLKKLADE 243 (326)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEeccccccc-cccccc-ccch--HHHHHHHHHHHHHHHHHHHh
Confidence 2 2222222223322222 2223344567899999999988 556655 2222 12334456667777766678
Q ss_pred cCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEE
Q 017792 184 SQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFE 262 (366)
Q Consensus 184 ~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~ 262 (366)
.+..||++||+...++... |+.....+.+|++|+|...+|+.+.+++ |-++..++.++++.|++ ...|.
T Consensus 244 ~g~~vvitn~v~~~~d~~~~f~~~~~~~~~~~~~~H~~~tr~~~~~~~---------g~~~~~k~~~s~~l~e~-~~~~~ 313 (326)
T KOG1433|consen 244 FGVAVVITNQVTAQVDGAIMFGSDPKKPIGGNIWAHAVTTRLGLRKGK---------GERRICKIADSPCLPEA-EAVFA 313 (326)
T ss_pred cCceEEEecccccccccccccCcccccccccchHHHHHHHHHHHHhcc---------ccchhhhhhcCCCCCcc-hhHHH
Confidence 9999999999999988754 6655578999999999999998877632 22335777888876653 45666
Q ss_pred EEeCCCCC
Q 017792 263 LEFGKGIS 270 (366)
Q Consensus 263 i~~~~Gi~ 270 (366)
|. ..|+.
T Consensus 314 i~-~~g~~ 320 (326)
T KOG1433|consen 314 IT-EDGIS 320 (326)
T ss_pred HH-hhhhh
Confidence 66 55654
No 65
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.67 E-value=1.1e-16 Score=152.53 Aligned_cols=161 Identities=18% Similarity=0.254 Sum_probs=121.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
-|++|+++.|.|||||||||+++.+++..++.+|. ++++++...+ +...+.+|+++|+..+++..|+.+++.+-.++.
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~-I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~ 105 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGE-ILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR 105 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc
Confidence 48899999999999999999999999999999886 7888887665 567789999999999999999999976643311
Q ss_pred hc-----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH---------------------HHHHHHH
Q 017792 133 RS-----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------------LRKLSHS 180 (366)
Q Consensus 133 ~~-----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------------L~~L~~~ 180 (366)
.. ....++-++....-. ..++++ |++|+...||+++.. -..+...
T Consensus 106 ~~~~~~~i~~rv~e~L~lV~L~~~~~R~-p~qLSG--GQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~l 182 (352)
T COG3842 106 KKLKKAEIKARVEEALELVGLEGFADRK-PHQLSG--GQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKEL 182 (352)
T ss_pred CCCCHHHHHHHHHHHHHHcCchhhhhhC-hhhhCh--HHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHH
Confidence 10 113445555555555 366776 999999999998754 2233444
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
.++.|+|.|++||.-++ .-..+|++..|+++.+...++
T Consensus 183 q~~~giT~i~VTHDqeE------------------Al~msDrI~Vm~~G~I~Q~gt 220 (352)
T COG3842 183 QRELGITFVYVTHDQEE------------------ALAMSDRIAVMNDGRIEQVGT 220 (352)
T ss_pred HHhcCCeEEEEECCHHH------------------HhhhccceEEccCCceeecCC
Confidence 45679999999997765 334678888888887665554
No 66
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=1.5e-16 Score=146.35 Aligned_cols=170 Identities=22% Similarity=0.261 Sum_probs=121.5
Q ss_pred ChHHHHHh-hCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcce
Q 017792 42 GSFALDIA-LGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLL 114 (366)
Q Consensus 42 G~~~LD~~-L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~ 114 (366)
....||.+ |. |++|++++|+|.+|+|||||++++..+-.|..|. +++++.+... ...++++|+.+|++.
T Consensus 18 ~~~al~~vsL~---I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~-v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 18 TVTALDDVSLE---IPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGS-VFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred ceeeeccceEE---EcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCce-EEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 34556644 44 8999999999999999999999887777777786 6777765433 256788999999999
Q ss_pred ecCCCCHHHHHHHHHHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------
Q 017792 115 LAQPDCGEQALSLVDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------- 173 (366)
Q Consensus 115 ~~~~~~~e~~l~~~~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------- 173 (366)
+....|+.+++.+-..+.... -..++-+..-..-+| .++++ |++|+..+||+++..
T Consensus 94 LLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-~qLSG--GQKQRVaIARALa~~P~iLL~DEaTS 170 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-AQLSG--GQKQRVAIARALANNPKILLCDEATS 170 (339)
T ss_pred ccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-hhcCc--chhhHHHHHHHHhcCCCEEEecCccc
Confidence 998888887765532221100 022333333333443 56776 999999999998764
Q ss_pred ----------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 ----------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 ----------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
|.-|...-++.|.||++|||.++. +..+||++..|.+++++.+|.
T Consensus 171 ALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V------------------vk~ic~rVavm~~G~lvE~G~ 225 (339)
T COG1135 171 ALDPETTQSILELLKDINRELGLTIVLITHEMEV------------------VKRICDRVAVLDQGRLVEEGT 225 (339)
T ss_pred cCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH------------------HHHHhhhheEeeCCEEEEecc
Confidence 444444446789999999997765 666788888888888777653
No 67
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.65 E-value=2.9e-16 Score=136.06 Aligned_cols=160 Identities=17% Similarity=0.182 Sum_probs=116.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+..|++++|.|+||+||||+++.++..+.|..|. +++++-+... ....+++|+.+...-++...|+++++.++..+.
T Consensus 25 ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~-v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~ 103 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLLRMIATLLIPDSGK-VTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN 103 (245)
T ss_pred eccceEEEEEcCCCCCchhHHHHHHHhccCCCce-EEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh
Confidence 6789999999999999999999999999998885 7888766543 356888999998888888899998877655432
Q ss_pred hcCCc----------eEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSGSV----------DVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~~~----------~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
.-.+. +.+-+++...-. -.+++. |.+|+...||++.+. ++.+...++
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rR-v~~~S~--G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k 180 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRR-VGEFST--GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK 180 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHH-Hhhhch--hhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh
Confidence 11110 000011111100 123333 667777777776653 777778888
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
..|.+|||++|.+.+ ++.+||++|.+++++++.++.
T Consensus 181 ~egr~viFSSH~m~E------------------vealCDrvivlh~Gevv~~gs 216 (245)
T COG4555 181 NEGRAVIFSSHIMQE------------------VEALCDRVIVLHKGEVVLEGS 216 (245)
T ss_pred cCCcEEEEecccHHH------------------HHHhhheEEEEecCcEEEcCC
Confidence 889999999999887 667899999999998887764
No 68
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.65 E-value=1.9e-16 Score=149.53 Aligned_cols=162 Identities=14% Similarity=0.182 Sum_probs=118.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
-+++|++++|.||||||||||++.+++.+.+.+|. +.++++.... ....+++||.+|++.+++..|+.+++.++..+
T Consensus 27 ~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~-i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l 105 (293)
T COG1131 27 EVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE-ILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARL 105 (293)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHH
Confidence 57899999999999999999999999999998887 5566654443 46778899999999999999999999988776
Q ss_pred HhcCC-ceEEEEecccccCC--------CCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 132 IRSGS-VDVVVVDSVAALVP--------KGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 132 ~~~~~-~~lvviDsl~~l~~--------~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
..... ...-.++.+...+. -..+++ |++|+...|.+++.. ++.+.+.++
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~--G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~ 183 (293)
T COG1131 106 YGLSKEEAEERIEELLELFGLEDKANKKVRTLSG--GMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELA 183 (293)
T ss_pred hCCChhHHHHHHHHHHHHcCCchhhCcchhhcCH--HHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHH
Confidence 43221 00001122211111 122333 666666666666543 677777777
Q ss_pred hcC-cEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQ-TILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~-~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.+ +||++++|..++ ++.+||+++.|+++.++..+.
T Consensus 184 ~~g~~tvlissH~l~e------------------~~~~~d~v~il~~G~~~~~g~ 220 (293)
T COG1131 184 KEGGVTILLSTHILEE------------------AEELCDRVIILNDGKIIAEGT 220 (293)
T ss_pred hCCCcEEEEeCCcHHH------------------HHHhCCEEEEEeCCEEEEeCC
Confidence 766 899999998876 666799999999998888763
No 69
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=2.4e-16 Score=143.35 Aligned_cols=154 Identities=18% Similarity=0.254 Sum_probs=107.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCccee--cCCCCHHHHHHHHHH-
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLL--AQPDCGEQALSLVDT- 130 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~--~~~~~~e~~l~~~~~- 130 (366)
-+++|+++.|+||||+|||||++.+++.+.+..|. +++.+.......-..++||+||+..+ .-|.++.+++..-..
T Consensus 26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~-i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~ 104 (254)
T COG1121 26 SVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE-IKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYG 104 (254)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcce-EEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcc
Confidence 47899999999999999999999999999998887 45555443333224689999997643 356788887654210
Q ss_pred ---HHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 131 ---LIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 131 ---~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
+++.. ....+-+-.+..- +-.+++| |++|+..+||++++. +..|
T Consensus 105 ~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-~i~~LSG--GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~l 181 (254)
T COG1121 105 KKGWFRRLNKKDKEKVDEALERVGMEDLRDR-QIGELSG--GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL 181 (254)
T ss_pred cccccccccHHHHHHHHHHHHHcCchhhhCC-cccccCc--HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHH
Confidence 00000 0001111111111 1355666 899999999998775 8888
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
.+.+++.|+||++++|.... +..++|.++.|.+.
T Consensus 182 L~~l~~eg~tIl~vtHDL~~------------------v~~~~D~vi~Ln~~ 215 (254)
T COG1121 182 LKELRQEGKTVLMVTHDLGL------------------VMAYFDRVICLNRH 215 (254)
T ss_pred HHHHHHCCCEEEEEeCCcHH------------------hHhhCCEEEEEcCe
Confidence 88888889999999997754 66788999999864
No 70
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.64 E-value=5.5e-16 Score=137.97 Aligned_cols=160 Identities=21% Similarity=0.281 Sum_probs=119.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
-+++|++++|.||+|||||||++.+.+++.+..|. +++++++... ..+.+++|+.+|.-.++...++.+++.+
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~Ge-I~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVaf 108 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGE-ILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF 108 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCe-EEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhe
Confidence 38899999999999999999999999999999887 6777776533 2457789999998888888888776544
Q ss_pred ------------HHHHHhcCCceEEEEecc-cccCCCCccCCccchhhHHHHHHHHHHH--------------------H
Q 017792 128 ------------VDTLIRSGSVDVVVVDSV-AALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 174 (366)
Q Consensus 128 ------------~~~~~~~~~~~lvviDsl-~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L 174 (366)
++.++ ..+..+|-+... ..++| .+++| |.+.+...||+++-. +
T Consensus 109 plre~~~lp~~~i~~lv-~~KL~~VGL~~~~~~~~P-sELSG--GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~ 184 (263)
T COG1127 109 PLREHTKLPESLIRELV-LMKLELVGLRGAAADLYP-SELSG--GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI 184 (263)
T ss_pred ehHhhccCCHHHHHHHH-HHHHHhcCCChhhhhhCc-hhhcc--hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH
Confidence 11111 112344444544 55664 77877 778888888887653 5
Q ss_pred HHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 175 RKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 175 ~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
-.|++.+++ .+.|++++||.... +..+||+++.+.+++++..|+
T Consensus 185 ~~LI~~L~~~lg~T~i~VTHDl~s------------------~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 185 DELIRELNDALGLTVIMVTHDLDS------------------LLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHhhCCEEEEEECChHH------------------HHhhhceEEEEeCCEEEEeCC
Confidence 556655554 59999999997765 556789999999988887765
No 71
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=3.1e-16 Score=144.01 Aligned_cols=160 Identities=16% Similarity=0.251 Sum_probs=121.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
|+.|++++|.||||||||||++.|+++..+..|. ++++++-.++ ....+++|+++|+..+++..|+.+++.+-..
T Consensus 25 i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~-I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~ 103 (345)
T COG1118 25 IKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR-IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLK 103 (345)
T ss_pred ecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCce-EEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccc
Confidence 7899999999999999999999999999998887 6677773333 4567889999999999999999998776432
Q ss_pred HHh------------cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 131 LIR------------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 131 ~~~------------~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
..+ ..-.+++-++.+..-+| ..+++ |++|+...||+++.. |++..
T Consensus 104 ~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-~QLSG--GQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wL 180 (345)
T COG1118 104 VRKERPSEAEIRARVEELLRLVQLEGLADRYP-AQLSG--GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWL 180 (345)
T ss_pred ccccCCChhhHHHHHHHHHHHhcccchhhcCc-hhcCh--HHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHH
Confidence 210 00144566777777775 66776 899999999988654 44444
Q ss_pred HHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 179 HSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 179 ~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
..+. +.|+|+|++||.-++ ...+||+++.|.++.+..-++
T Consensus 181 r~~~~~~~~ttvfVTHD~ee------------------a~~ladrvvvl~~G~Ieqvg~ 221 (345)
T COG1118 181 RKLHDRLGVTTVFVTHDQEE------------------ALELADRVVVLNQGRIEQVGP 221 (345)
T ss_pred HHHHHhhCceEEEEeCCHHH------------------HHhhcceEEEecCCeeeeeCC
Confidence 3333 459999999998765 445789999999887555443
No 72
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.64 E-value=1.3e-14 Score=127.83 Aligned_cols=167 Identities=19% Similarity=0.265 Sum_probs=113.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCcc------eecCCC----CH------
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL------LLAQPD----CG------ 121 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~~------~~~~~~----~~------ 121 (366)
++.|.||||+|||+|+.+++....+.|..|+|++.|++.+. .+++++|++.+.+ .+.... +.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~ 80 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR 80 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence 47899999999999999999999888999999999988764 4456677765432 221110 11
Q ss_pred HHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccc
Q 017792 122 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTF 201 (366)
Q Consensus 122 e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~ 201 (366)
.+++..+...+...+++++++|+++.+... + .. . ....++.+...+++.|+|+|+++|.....+
T Consensus 81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~~~----~---~~----~---~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~-- 144 (187)
T cd01124 81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLM----E---QS----T---ARLEIRRLLFALKRFGVTTLLTSEQSGLEG-- 144 (187)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHHHhhc----C---hH----H---HHHHHHHHHHHHHHCCCEEEEEeccccCCC--
Confidence 134455555556678999999999988631 1 00 1 113445555556667999999999775421
Q ss_pred cCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC
Q 017792 202 GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 255 (366)
Q Consensus 202 ~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~ 255 (366)
...+...+.++||.++.|++.. .+. ..++.+.|+|+|.+++
T Consensus 145 -------~~~~~~~~~~~aD~ii~l~~~~---~~~---~~~r~l~i~K~R~~~~ 185 (187)
T cd01124 145 -------TGFGGGDVEYLVDGVIRLRLDE---EGG---RLRRSLSVVKMRGGPH 185 (187)
T ss_pred -------cccCcCceeEeeeEEEEEEEEc---cCC---EEEEEEEEEEccCCCC
Confidence 1123345899999999998652 111 1244699999997765
No 73
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.61 E-value=2.3e-15 Score=129.41 Aligned_cols=154 Identities=22% Similarity=0.282 Sum_probs=113.0
Q ss_pred cccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccC
Q 017792 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTE 111 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~ 111 (366)
..+.|-+.|+.+-- -+++|+++-|+||+|||||||++.+++...+..|.+.+ ++.+... +.+++++|+++|
T Consensus 10 ~Y~~g~~aL~~vs~--~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~-~~~dl~~l~~~~iP~LRR~IGvVFQ 86 (223)
T COG2884 10 AYPGGREALRDVSF--HIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV-NGHDLSRLKGREIPFLRRQIGVVFQ 86 (223)
T ss_pred hcCCCchhhhCceE--eecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEE-CCeecccccccccchhhheeeeEee
Confidence 44556556766532 48999999999999999999999999999998887544 4433221 467899999999
Q ss_pred cceecCCCCHHHHHHHHHHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------
Q 017792 112 NLLLAQPDCGEQALSLVDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------- 173 (366)
Q Consensus 112 ~~~~~~~~~~e~~l~~~~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------- 173 (366)
+..+....|+.+++.+....+... -.++|-+-.-...+| .++++ |++|+..+||++...
T Consensus 87 D~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-~~LSG--GEQQRvaIARAiV~~P~vLlADE 163 (223)
T COG2884 87 DFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-SQLSG--GEQQRVAIARAIVNQPAVLLADE 163 (223)
T ss_pred eccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-cccCc--hHHHHHHHHHHHccCCCeEeecC
Confidence 999998888888766543322110 123333333344453 67777 999999999998654
Q ss_pred ------------HHHHHHHhhhcCcEEEEEecCCcc
Q 017792 174 ------------LRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 174 ------------L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
+.+|...+...|+|||+.+|...-
T Consensus 164 PTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l 199 (223)
T COG2884 164 PTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL 199 (223)
T ss_pred CCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH
Confidence 777777778899999999997664
No 74
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.4e-15 Score=144.06 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=119.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+..|+++.|+||||||||||++.++++..+.+|. ++|+++...+ +...+.+++++|+..+++..|+.+++.+-.+...
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~-I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~ 104 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE-ILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG 104 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC
Confidence 6799999999999999999999999999988887 7888887666 5667899999999999999999999877443311
Q ss_pred ----------cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-h
Q 017792 134 ----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-S 182 (366)
Q Consensus 134 ----------~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~ 182 (366)
..-..++-++.+..-.| .+++| |++|+..++|++... ++.-.+.+ +
T Consensus 105 ~~k~ei~~rV~eva~~L~l~~lL~r~P-~~LSG--GQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~ 181 (338)
T COG3839 105 VPKAEIDKRVKEVAKLLGLEHLLNRKP-LQLSG--GQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE 181 (338)
T ss_pred CchHHHHHHHHHHHHHcCChhHHhcCc-ccCCh--hhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHH
Confidence 01134455666655553 66776 899999999998764 33222222 3
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++|+|++||.-.+ ....+|++..|..+.+..-+.
T Consensus 182 ~l~~T~IYVTHDq~E------------------Amtladri~Vm~~G~i~Q~g~ 217 (338)
T COG3839 182 RLGTTTIYVTHDQVE------------------AMTLADRIVVMNDGRIQQVGT 217 (338)
T ss_pred hcCCcEEEEcCCHHH------------------HHhhCCEEEEEeCCeeeecCC
Confidence 569999999997654 344678888888776555443
No 75
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=6.8e-16 Score=138.83 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=108.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR- 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~- 133 (366)
+++|+++.|+||||||||||++.+++...+..|. +.+++..... -...++|++|+..+++..|+.+++.+......
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~-V~~~g~~v~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~ 102 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE-VLLDGRPVTG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRGK 102 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCcccCC--CCCCEEEEeccCcccchhhHHhhheehhhcccc
Confidence 6799999999999999999999999999988887 5666654422 23468999999999988888887654332210
Q ss_pred ---------cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HH-HHHHHhhh
Q 017792 134 ---------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LR-KLSHSLSL 183 (366)
Q Consensus 134 ---------~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~-~L~~~l~~ 183 (366)
..-...+-+......+| .+++| |++|+...||+++.. |+ .|...+++
T Consensus 103 ~~~e~~~~a~~~L~~VgL~~~~~~~P-~qLSG--GMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~ 179 (248)
T COG1116 103 SKAEARERAKELLELVGLAGFEDKYP-HQLSG--GMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179 (248)
T ss_pred chHhHHHHHHHHHHHcCCcchhhcCc-cccCh--HHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh
Confidence 00122333444455554 67777 899999999998764 22 33444567
Q ss_pred cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 184 ~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
.+.|||++||..++ .-+++|+++.|..
T Consensus 180 ~~~TvllVTHdi~E------------------Av~LsdRivvl~~ 206 (248)
T COG1116 180 TRKTVLLVTHDVDE------------------AVYLADRVVVLSN 206 (248)
T ss_pred hCCEEEEEeCCHHH------------------HHhhhCEEEEecC
Confidence 89999999998776 4567888887764
No 76
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.59 E-value=2.7e-15 Score=142.66 Aligned_cols=161 Identities=16% Similarity=0.183 Sum_probs=112.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
-+++|++++|+||||||||||++.+++.+.+..|. +++++..... ....+++|+.+|+..++...++.+.+.+...+
T Consensus 29 ~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~-v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~ 107 (306)
T PRK13537 29 HVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGS-ISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRY 107 (306)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHH
Confidence 37799999999999999999999999998888887 5666654432 34567899999998888888998887764432
Q ss_pred HhcCCc----------eEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 132 IRSGSV----------DVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 132 ~~~~~~----------~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
...... ..+-+.....- +-..+++ |++|+...|++++.. ++.+...+
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~--G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l 184 (306)
T PRK13537 108 FGLSAAAARALVPPLLEFAKLENKADA-KVGELSG--GMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL 184 (306)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcC-chhhCCH--HHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 110000 00001111000 0123333 777777777777654 66777777
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
++.|+|||+++|..++ ++.+||+++.|+++.++..++
T Consensus 185 ~~~g~till~sH~l~e------------------~~~~~d~i~il~~G~i~~~g~ 221 (306)
T PRK13537 185 LARGKTILLTTHFMEE------------------AERLCDRLCVIEEGRKIAEGA 221 (306)
T ss_pred HhCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEEEECC
Confidence 6679999999998876 667899999999887766654
No 77
>PRK07773 replicative DNA helicase; Validated
Probab=99.58 E-value=4.5e-14 Score=151.57 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=111.5
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHHHhh----cccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSLAET----IGVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~~~~----ig~~ 109 (366)
...++|||++.||.+++ |+++|+++.|.|+||+|||+|+++++..+... +..|+|++.|++..+...+. .+++
T Consensus 196 ~~~Gi~TG~~~LD~l~~--Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R~~s~~~~i~ 273 (886)
T PRK07773 196 LARGVPTGFTELDAMTN--GLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMRLLSAEAKIK 273 (886)
T ss_pred CCCCccCChhHhccccC--CCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCCC
Confidence 46799999999999885 99999999999999999999999999988754 67899999998866422221 1221
Q ss_pred cC-------------------------cceec--CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 110 TE-------------------------NLLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 110 ~~-------------------------~~~~~--~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
.+ ++++. ...++.++...+..+.+..+++++|||+++.+..... .+ .
T Consensus 274 ~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~-----~~-~ 347 (886)
T PRK07773 274 LSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLMTSGKK-----YE-N 347 (886)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCCCC-----CC-C
Confidence 11 11221 2347888888888887777899999999998752110 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccc
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLST 200 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~ 200 (366)
+ ...+....+.|...+++.+++||+++|+++.++.
T Consensus 348 r---~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~e~ 382 (886)
T PRK07773 348 R---QQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQ 382 (886)
T ss_pred H---HHHHHHHHHHHHHHHHHHCCcEEEecccCcchhc
Confidence 1 1233444444555556789999999999987544
No 78
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.57 E-value=6.4e-15 Score=130.49 Aligned_cols=152 Identities=24% Similarity=0.356 Sum_probs=82.5
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----------cCCeEEEEeCCCCCCH--H
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR----------QGGYCVFIDAEHALDP--S 101 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~----------~gg~vl~id~e~~~~~--~ 101 (366)
.....++++++.+|.+++ |++++|+++.|+|++|+|||||+.+++..+.. .+++|+|++.|..... .
T Consensus 9 ~~~~~~~~~~~~~~~li~-g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~ 87 (193)
T PF13481_consen 9 SSFEDLDTGFPPLDWLID-GLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIAR 87 (193)
T ss_dssp ----HHHS------EEET-TEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHH
T ss_pred hhhhhccCCCCCcceeEC-CcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHH
Confidence 456679999999999999 99999999999999999999999999998875 4678999999988542 1
Q ss_pred HHhhccccc---Cc-----------ceecCCC----CHHHHHHHHHHHHhc-CCceEEEEecccccCCCCccCCccchhh
Q 017792 102 LAETIGVKT---EN-----------LLLAQPD----CGEQALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 102 ~~~~ig~~~---~~-----------~~~~~~~----~~e~~l~~~~~~~~~-~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
+...+.-.. ++ +.++... .....+..+...+.. .++++||||++..+.+. ..+ +.
T Consensus 88 rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~-~~~----~~- 161 (193)
T PF13481_consen 88 RLRALLQDYDDDANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG-DEN----SN- 161 (193)
T ss_dssp HHHHHHTTS-HHHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S--TT-----H-
T ss_pred HHHHHhcccCCccceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC-CCC----CH-
Confidence 121111111 11 1111111 124455556666666 67999999999999853 111 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcc
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
...+.+.+.|+++. +++|++||++.|.++.
T Consensus 162 --~~~~~~~~~l~~la---~~~~~~vi~v~H~~K~ 191 (193)
T PF13481_consen 162 --SAVAQLMQELKRLA---KEYGVAVILVHHTNKS 191 (193)
T ss_dssp --HHHHHHHHHHHHHH---HHH--EEEEEEEE---
T ss_pred --HHHHHHHHHHHHHH---HHcCCEEEEEECCCCC
Confidence 11133444455544 6789999999998753
No 79
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=8.9e-15 Score=133.17 Aligned_cols=161 Identities=21% Similarity=0.217 Sum_probs=115.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC----CHHHHhhcccccCcce--ecCCC--------
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----DPSLAETIGVKTENLL--LAQPD-------- 119 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~----~~~~~~~ig~~~~~~~--~~~~~-------- 119 (366)
.+++|+.++|+|+||||||||++++.+.+.+..|.+ ++++.... -..+.+++|+++|++. ++.+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v-~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg 104 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV-LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG 104 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE-EECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhc
Confidence 588999999999999999999999999999998875 78776644 2467888999999873 22221
Q ss_pred ------CHHHHHHHHHH----------------HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHH
Q 017792 120 ------CGEQALSLVDT----------------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 177 (366)
Q Consensus 120 ------~~e~~l~~~~~----------------~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L 177 (366)
..++....+.. .++.++.+.+.|+++.++.|..-+-+++.......-.+.+...+++|
T Consensus 105 ~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L 184 (235)
T COG1122 105 LENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKL 184 (235)
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 22222222221 12445667777888777777666666666555555555555666666
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
. .+.+.|||+++|..+. +..+||+++.|++++++.+++
T Consensus 185 ~---~~~~~tii~~tHd~~~------------------~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 185 K---EEGGKTIIIVTHDLEL------------------VLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred H---hcCCCeEEEEeCcHHH------------------HHhhCCEEEEEECCEEeecCC
Confidence 5 3457999999998765 566899999999988777765
No 80
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.56 E-value=6.1e-15 Score=142.02 Aligned_cols=160 Identities=14% Similarity=0.162 Sum_probs=112.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... ....+.+|+.+|+..++...++.+++.+...+.
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~-i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~ 142 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMTSPDAGK-ITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF 142 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceE-EEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc
Confidence 7899999999999999999999999998888887 5666654332 345677999999988888888888876543321
Q ss_pred hcCC----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~~----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
.... ...+-++....-. ...+++ |++|+...|++++.. ++.+...++
T Consensus 143 ~~~~~~~~~~~~~ll~~~~L~~~~~~~-~~~LS~--G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~ 219 (340)
T PRK13536 143 GMSTREIEAVIPSLLEFARLESKADAR-VSDLSG--GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 219 (340)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhCCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 1000 0000011110111 123433 777777888777653 666666666
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.|.|||+++|..+. +..+||+++.|+++.++..++
T Consensus 220 ~~g~tilisSH~l~e------------------~~~~~d~i~il~~G~i~~~g~ 255 (340)
T PRK13536 220 ARGKTILLTTHFMEE------------------AERLCDRLCVLEAGRKIAEGR 255 (340)
T ss_pred hCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 679999999998775 667899999999888776654
No 81
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.56 E-value=8.3e-15 Score=139.20 Aligned_cols=161 Identities=14% Similarity=0.183 Sum_probs=110.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
-+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+.+.+|+.+|+..++...++.+.+.+...+
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 93 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGT-ARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRL 93 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHH
Confidence 37899999999999999999999999998888887 5666543322 34566799999998888778888877654322
Q ss_pred HhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 132 IRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 132 ~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
.... -...+-++....-. ...+++ |++|+...|++++.. +..+...+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 170 (302)
T TIGR01188 94 YGLPKDEAEERAEELLELFELGEAADRP-VGTYSG--GMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL 170 (302)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhCCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 1000 00011111111111 133444 788888888877653 66666666
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
++.|+|||+++|.... +..+||+++.|.++.++..++
T Consensus 171 ~~~g~tvi~~sH~~~~------------------~~~~~d~v~~l~~G~i~~~g~ 207 (302)
T TIGR01188 171 KEEGVTILLTTHYMEE------------------ADKLCDRIAIIDHGRIIAEGT 207 (302)
T ss_pred HhCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEEEECC
Confidence 6669999999998765 566899999999887665543
No 82
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.55 E-value=8.9e-15 Score=140.83 Aligned_cols=160 Identities=18% Similarity=0.224 Sum_probs=110.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---H---HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~---~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++.... . .+.+.+|+.+|+..++...++.+++.+.
T Consensus 28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~-I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~ 106 (343)
T TIGR02314 28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS-VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALP 106 (343)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHH
Confidence 7799999999999999999999999988888886 6677664432 1 2356799999998888778888776543
Q ss_pred HHHHhc----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
...... .-...+-+....... ..++++ |++|+...||+++.. +..+.
T Consensus 107 ~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-~~~LSg--GqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL 183 (343)
T TIGR02314 107 LELDNTPKDEIKRKVTELLALVGLGDKHDSY-PSNLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL 183 (343)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 221000 001111122221222 245555 899999999998765 55555
Q ss_pred HHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 179 HSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 179 ~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.+.+ .++|||+++|..+. +..+||+++.|+++.++..+.
T Consensus 184 ~~l~~~~g~tiiliTH~~~~------------------v~~~~d~v~vl~~G~iv~~g~ 224 (343)
T TIGR02314 184 KEINRRLGLTILLITHEMDV------------------VKRICDCVAVISNGELIEQGT 224 (343)
T ss_pred HHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 55544 59999999997764 556789999998887765543
No 83
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.55 E-value=1.3e-14 Score=128.73 Aligned_cols=161 Identities=20% Similarity=0.230 Sum_probs=119.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+++|+++.|.|+||+|||||++.+++...+..|.+ .+++++... ......++++||.-.+++..|++|++..-..
T Consensus 26 v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I-~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~ 104 (237)
T COG0410 26 VERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI-IFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAY 104 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeE-EECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhh
Confidence 67999999999999999999999999999888874 555655432 2345568899999999999999999887544
Q ss_pred HHhcCCceEEEEecccccCCC---------CccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 131 LIRSGSVDVVVVDSVAALVPK---------GELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 131 ~~~~~~~~lvviDsl~~l~~~---------~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
..+........+|.+-.+||+ ..+++ |++|+...+|++... +....+.+
T Consensus 105 ~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSG--GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l 182 (237)
T COG0410 105 ARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSG--GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKEL 182 (237)
T ss_pred cccccccccccHHHHHHHChhHHHHhcCcccCCCh--HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHH
Confidence 333212222237778888872 34444 889988888887654 55556666
Q ss_pred hh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 182 SL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 182 ~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
++ .+.||+++.|.... .-.+||+...|.++++..+|.
T Consensus 183 ~~~~g~tIlLVEQn~~~------------------Al~iaDr~yvle~Griv~~G~ 220 (237)
T COG0410 183 RKEGGMTILLVEQNARF------------------ALEIADRGYVLENGRIVLSGT 220 (237)
T ss_pred HHcCCcEEEEEeccHHH------------------HHHhhCEEEEEeCCEEEEecC
Confidence 64 48899999996543 345789999999888777764
No 84
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=9.3e-15 Score=129.86 Aligned_cols=174 Identities=20% Similarity=0.194 Sum_probs=119.1
Q ss_pred cCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcc
Q 017792 40 STGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENL 113 (366)
Q Consensus 40 ~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~ 113 (366)
|-|-..|+.+=- -|++|++++|+|++|||||||++++.+...+..|. +++++.+... +.+++++|+.+|.+
T Consensus 14 p~~~~aL~~Vnl--~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~-i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~ 90 (258)
T COG3638 14 PGGHQALKDVNL--EINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE-ILFNGVQITKLKGKELRKLRRDIGMIFQQF 90 (258)
T ss_pred CCCceeeeeEeE--EeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcce-EEecccchhccchHHHHHHHHhceeEeccC
Confidence 345555555421 38899999999999999999999999988887776 6666654432 35678899999999
Q ss_pred eecCCCCHHHHHHH--------HHHHHhcC--CceEEEEeccc-------ccCCCCccCCccchhhHHHHHHHHHHH---
Q 017792 114 LLAQPDCGEQALSL--------VDTLIRSG--SVDVVVVDSVA-------ALVPKGELDGEMGDAHMAMQARLMSQA--- 173 (366)
Q Consensus 114 ~~~~~~~~e~~l~~--------~~~~~~~~--~~~lvviDsl~-------~l~~~~~l~~~~g~~~~~~~ar~l~~~--- 173 (366)
.+.+..++-+++-. +..++.-. .-+...+|.+. ++.....+++ |++|+..+||++.+.
T Consensus 91 nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSG--GQQQRVaIARaL~Q~pki 168 (258)
T COG3638 91 NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSG--GQQQRVAIARALVQQPKI 168 (258)
T ss_pred CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCc--chhHHHHHHHHHhcCCCE
Confidence 88877776554321 11111100 00111122221 1222456666 999999999998875
Q ss_pred ------------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ------------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ------------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..|....++.|+|||+.-|..+- ...||+++|-|+.++++.+|
T Consensus 169 ILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl------------------A~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 169 ILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL------------------AKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred EecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH------------------HHHHHhhheEecCCcEEEeC
Confidence 444555556789999999996642 56689999999999888876
Q ss_pred c
Q 017792 236 E 236 (366)
Q Consensus 236 ~ 236 (366)
.
T Consensus 231 ~ 231 (258)
T COG3638 231 P 231 (258)
T ss_pred C
Confidence 5
No 85
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=8.3e-15 Score=141.98 Aligned_cols=159 Identities=14% Similarity=0.181 Sum_probs=110.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++...+ +...+.+||.+|+..+++..++.+++.+......
T Consensus 27 i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~ 105 (356)
T PRK11650 27 VADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE-IWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRG 105 (356)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcC
Confidence 6799999999999999999999999998888886 6777765433 2344789999999999888899888765432100
Q ss_pred c----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-
Q 017792 134 S----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS- 182 (366)
Q Consensus 134 ~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~- 182 (366)
. .-...+-++.+..-. ..++++ |++|+...||+++.. ++.+.+.+.
T Consensus 106 ~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSg--Gq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~ 182 (356)
T PRK11650 106 MPKAEIEERVAEAARILELEPLLDRK-PRELSG--GQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR 182 (356)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 001111223222222 245555 899999999988754 444444444
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.++|+|+++|...+ +..+||+++.|+++++...+
T Consensus 183 ~~g~tii~vTHd~~e------------------a~~l~D~i~vl~~G~i~~~g 217 (356)
T PRK11650 183 RLKTTSLYVTHDQVE------------------AMTLADRVVVMNGGVAEQIG 217 (356)
T ss_pred hcCCEEEEEeCCHHH------------------HHHhCCEEEEEeCCEEEEEC
Confidence 459999999997765 45578888888877765544
No 86
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.53 E-value=7.9e-15 Score=131.04 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=103.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCccee--cCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLL--AQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~--~~~~~~e~~l~~~ 128 (366)
+.+|++++|+|++|||||||++.+++...+..|. +++++..... ..+.+.+.+++|++.- .+..++.+++...
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~-I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Ep 108 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSGS-ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEP 108 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCce-EEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhh
Confidence 6799999999999999999999999998887776 6777754433 2567778899988753 2334555443321
Q ss_pred -------------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH---------------------H
Q 017792 129 -------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------------L 174 (366)
Q Consensus 129 -------------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------------L 174 (366)
..++..-... .+...-+ ..+++| |++|+...||++.-. |
T Consensus 109 l~~~~~~~~~~~i~~~L~~VgL~----~~~l~R~-P~eLSG--GQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~Il 181 (252)
T COG1124 109 LRPHGLSKSQQRIAELLDQVGLP----PSFLDRR-PHELSG--GQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQIL 181 (252)
T ss_pred hccCCccHHHHHHHHHHHHcCCC----HHHHhcC-chhcCh--hHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHH
Confidence 1111111111 1222233 255666 888888888876543 3
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
.-|...-++++.|+|||+|.... +.|+||+++.|.++.++..
T Consensus 182 nlL~~l~~~~~lt~l~IsHdl~~------------------v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 182 NLLLELKKERGLTYLFISHDLAL------------------VEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred HHHHHHHHhcCceEEEEeCcHHH------------------HHHHhhheeeeeCCeEEEe
Confidence 33333335689999999997654 8899999999998875544
No 87
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.53 E-value=1.3e-14 Score=123.99 Aligned_cols=160 Identities=18% Similarity=0.241 Sum_probs=110.2
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC-CCHHHHhhcccccCcceecCCCCHHHHHHHH----
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDPSLAETIGVKTENLLLAQPDCGEQALSLV---- 128 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~-~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~---- 128 (366)
-++.|+++.|.||+|||||||+..+++...+..|. +++++++. ..+...+-+.+.+|...++...++++++..-
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~-i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~ 99 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE-ILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG 99 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCce-EEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc
Confidence 37899999999999999999999999999998886 66766543 3345556677888877777777777664321
Q ss_pred ------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH-HHHHh
Q 017792 129 ------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK-LSHSL 181 (366)
Q Consensus 129 ------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~-L~~~l 181 (366)
.+.........+-+.+...-.| .++++ |++|+...||.+.+. +.. +....
T Consensus 100 LkL~a~~r~~v~~aa~~vGl~~~~~RLP-~~LSG--GqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~ 176 (231)
T COG3840 100 LKLNAEQREKVEAAAAQVGLAGFLKRLP-GELSG--GQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC 176 (231)
T ss_pred cccCHHHHHHHHHHHHHhChhhHhhhCc-cccCc--hHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHH
Confidence 0000000112223344444443 56766 899999999887654 333 33444
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.+.+.|+++++|..++ ...++++++++.++++...+
T Consensus 177 ~E~~~TllmVTH~~~D------------------a~~ia~~~~fl~~Gri~~~g 212 (231)
T COG3840 177 DERKMTLLMVTHHPED------------------AARIADRVVFLDNGRIAAQG 212 (231)
T ss_pred HhhCCEEEEEeCCHHH------------------HHHhhhceEEEeCCEEEeec
Confidence 6789999999997765 56678999999988765554
No 88
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=2.5e-14 Score=130.93 Aligned_cols=159 Identities=21% Similarity=0.203 Sum_probs=104.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++...++.+.+...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 101 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGE-VLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFP 101 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHH
Confidence 7799999999999999999999999988887787 4566543221 23456799999988777777887776543
Q ss_pred HHHHhcCC-----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 129 DTLIRSGS-----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 129 ~~~~~~~~-----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
........ ...+-+.....-. ...+++ |++|+...||+++.. +.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~ 178 (235)
T cd03261 102 LREHTRLSEEEIREIVLEKLEAVGLRGAEDLY-PAELSG--GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178 (235)
T ss_pred HhhccCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence 21100000 0011111111111 134444 888888888887653 4555
Q ss_pred HHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+.+ .++|||+++|..+. +..+||+++.|.++.+...+
T Consensus 179 l~~~~~~~~~tvi~vsH~~~~------------------~~~~~d~v~~l~~G~i~~~g 219 (235)
T cd03261 179 IRSLKKELGLTSIMVTHDLDT------------------AFAIADRIAVLYDGKIVAEG 219 (235)
T ss_pred HHHHHHhcCcEEEEEecCHHH------------------HHHhcCEEEEEECCeEEEec
Confidence 555444 58999999997764 55678999999877654443
No 89
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.52 E-value=1.9e-14 Score=141.07 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=110.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
+++|++++|+||||||||||++.+++.+.+..|. ++++++.... ..+++++|+.+|+..+....++.+++......
T Consensus 26 i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~-I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~ 104 (402)
T PRK09536 26 VREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGT-VLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTP 104 (402)
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcE-EEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccch
Confidence 6799999999999999999999999988888887 5666654332 45677899999988777777777766542110
Q ss_pred ----Hhc-C---------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 132 ----IRS-G---------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 132 ----~~~-~---------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
+.. . -...+-+..+..- +-..+++ |++|+...||++++. ++.+
T Consensus 105 ~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-~~~~LSg--GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~l 181 (402)
T PRK09536 105 HRSRFDTWTETDRAAVERAMERTGVAQFADR-PVTSLSG--GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLEL 181 (402)
T ss_pred hcccccCCCHHHHHHHHHHHHHcCCchhhcC-ChhhCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 000 0 0011111111111 1234444 889999999988765 6666
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
.+.+.+.+.|||+++|..+. +..+||+++.|+++.++..+.
T Consensus 182 L~~l~~~g~TIIivsHdl~~------------------~~~~adrii~l~~G~iv~~G~ 222 (402)
T PRK09536 182 VRRLVDDGKTAVAAIHDLDL------------------AARYCDELVLLADGRVRAAGP 222 (402)
T ss_pred HHHHHhcCCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEecC
Confidence 66666678999999998765 556789999998887766554
No 90
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=3.8e-14 Score=124.00 Aligned_cols=162 Identities=21% Similarity=0.237 Sum_probs=116.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC-CCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH-ALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~-~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++|++.+|+||||+|||||++.+++.+.+.+|.|.|..-.- .+. ..+++..++.+|+..+.-|.++.+++.+-..-.
T Consensus 24 ~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~ 103 (259)
T COG4559 24 LRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPH 103 (259)
T ss_pred ccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccc
Confidence 789999999999999999999999999999999877654321 222 467888999999998888888887765522111
Q ss_pred hcCCc------------eEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------------H
Q 017792 133 RSGSV------------DVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------------L 174 (366)
Q Consensus 133 ~~~~~------------~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------------L 174 (366)
+.+.. ...-+..+..-. ...+++ |++|+...||.+++. .
T Consensus 104 ~~g~~~~e~~~i~~~ala~~d~~~la~R~-y~~LSG--GEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~t 180 (259)
T COG4559 104 RSGREPEEDERIAAQALAATDLSGLAGRD-YRTLSG--GEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHT 180 (259)
T ss_pred ccCCCchhhHHHHHHHHHHcChhhhhccc-hhhcCc--hHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHH
Confidence 11000 000111222211 234555 899999999999886 5
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
.++.+.+...|+.|++|-|+.+- -++|||+++.|.+++++..|.+
T Consensus 181 l~laR~la~~g~~V~~VLHDLNL------------------AA~YaDrivll~~Grv~a~g~p 225 (259)
T COG4559 181 LRLARQLAREGGAVLAVLHDLNL------------------AAQYADRIVLLHQGRVIASGSP 225 (259)
T ss_pred HHHHHHHHhcCCcEEEEEccchH------------------HHHhhheeeeeeCCeEeecCCH
Confidence 56666677789999999997642 5789999999999988877653
No 91
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.52 E-value=1.7e-14 Score=139.57 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=111.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++...+ +...+.+|+.+|+..+++..++.+++.+......
T Consensus 27 i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~-I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~ 105 (353)
T TIGR03265 27 VKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGT-IYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRG 105 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcC
Confidence 6699999999999999999999999998888887 5677765433 2345679999999999888899888765422100
Q ss_pred ----------cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-h
Q 017792 134 ----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-S 182 (366)
Q Consensus 134 ----------~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~ 182 (366)
..-...+-++.+..-. ..++++ |++|+...||+++.. ++.+.+.+ +
T Consensus 106 ~~~~~~~~~~~~~l~~l~L~~~~~~~-~~~LSg--Gq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 182 (353)
T TIGR03265 106 MGRAEVAERVAELLDLVGLPGSERKY-PGQLSG--GQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR 182 (353)
T ss_pred CCHHHHHHHHHHHHHHcCCCchhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 0001122222222222 234554 899999999988754 44444443 3
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++|+|+++|...+ +..+||+++.|++++++..++
T Consensus 183 ~~~~tvi~vTHd~~e------------------a~~l~d~i~vl~~G~i~~~g~ 218 (353)
T TIGR03265 183 RLGVTTIMVTHDQEE------------------ALSMADRIVVMNHGVIEQVGT 218 (353)
T ss_pred hcCCEEEEEcCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 469999999998765 456788888888887665543
No 92
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.52 E-value=2.4e-14 Score=138.73 Aligned_cols=159 Identities=23% Similarity=0.259 Sum_probs=111.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-HH----HhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-SL----AETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~~----~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++.... . .+ .+.++|.+|+..+++..|+.+++.+
T Consensus 16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~-I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~ 94 (363)
T TIGR01186 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQ-IFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSL 94 (363)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCCCCceE-EEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHH
Confidence 7799999999999999999999999999988887 6777765432 2 22 5679999999998888899887765
Q ss_pred HHHHHhc----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
...+... .-...+-++...... ...+++ |++|+...||+++.. +..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~-p~~LSG--Gq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~ 171 (363)
T TIGR01186 95 GPELLGWPEQERKEKALELLKLVGLEEYEHRY-PDELSG--GMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDE 171 (363)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhcCCchhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 3322100 001122223322222 234555 889999999988764 5555
Q ss_pred HHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+. +.+.|||+++|..+. +..+||+++.|+++.++..+
T Consensus 172 l~~l~~~~~~Tii~vTHd~~e------------------a~~~~drI~vl~~G~iv~~g 212 (363)
T TIGR01186 172 LKKLQATLQKTIVFITHDLDE------------------AIRIGDRIVIMKAGEIVQVG 212 (363)
T ss_pred HHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEeCCEEEeeC
Confidence 55544 458999999998765 44568888888887765544
No 93
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.52 E-value=2e-14 Score=129.87 Aligned_cols=153 Identities=17% Similarity=0.248 Sum_probs=101.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. ++++++.... ..+.+.+++.+|+..++...++.+.+...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 104 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGK-IRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFP 104 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHH
Confidence 7799999999999999999999999988887786 5666653321 12456799999998777777887776543
Q ss_pred HHHHh-------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~-------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
..... . .-...+-+....... ...+++ |++|+...||+++.. +.++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 181 (216)
T TIGR00960 105 LRIIGVPPRDANERVSAALEKVGLEGKAHAL-PMQLSG--GEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLF 181 (216)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 21100 0 000111111111111 134444 888888888887654 55555
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
..+++.+.|||+++|..+. +..+||+++.|+++
T Consensus 182 ~~~~~~~~tii~vsH~~~~------------------~~~~~d~i~~l~~G 214 (216)
T TIGR00960 182 EEFNRRGTTVLVATHDINL------------------VETYRHRTLTLSRG 214 (216)
T ss_pred HHHHHCCCEEEEEeCCHHH------------------HHHhCCEEEEEeCC
Confidence 5555568999999997654 45578888888764
No 94
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.52 E-value=2.6e-14 Score=135.82 Aligned_cols=160 Identities=15% Similarity=0.169 Sum_probs=107.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.... ...+.+.+|+.+|+..++...++.+.+.......
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 105 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLGMISPDRGK-ITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF 105 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc
Confidence 7799999999999999999999999988888787 556654322 2344667999999988777778887765432211
Q ss_pred hcCC----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~~----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
.... ...+-++...... ...+++ |++|+...|++++.. +..+...+.
T Consensus 106 ~~~~~~~~~~~~~ll~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 182 (303)
T TIGR01288 106 GMSTREIEAVIPSLLEFARLESKADVR-VALLSG--GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 182 (303)
T ss_pred CCCHHHHHHHHHHHHHHCCChhHhcCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 0000 0011111111111 133444 788888888877654 556666665
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.|.|||+++|..+. +..+||+++.|+++.++..++
T Consensus 183 ~~g~til~~sH~~~~------------------~~~~~d~i~~l~~G~i~~~g~ 218 (303)
T TIGR01288 183 ARGKTILLTTHFMEE------------------AERLCDRLCVLESGRKIAEGR 218 (303)
T ss_pred hCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 679999999998765 566789999998887665543
No 95
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.52 E-value=3.6e-13 Score=114.97 Aligned_cols=157 Identities=24% Similarity=0.315 Sum_probs=105.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhh----cccccCcceecCCC----CHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAET----IGVKTENLLLAQPD----CGEQALSLVDTL 131 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~----ig~~~~~~~~~~~~----~~e~~l~~~~~~ 131 (366)
+++|+|+||+|||||+..++..+...++.++|++.+.......... .....++..+.... ............
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 4789999999999999999999988899999999998776433211 11122333332222 233333344455
Q ss_pred HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeecc
Q 017792 132 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC 211 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~ 211 (366)
.....+.++|+|++..+.+.. ... .....+.+...+..+...+++.++++|+++|....... ..+ . ..
T Consensus 81 ~~~~~~~~lviDe~~~~~~~~-~~~------~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~--~~~--~-~~ 148 (165)
T cd01120 81 RERGGDDLIILDELTRLVRAL-REI------REGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKG--DPR--L-TR 148 (165)
T ss_pred HhCCCCEEEEEEcHHHHHHHH-HHH------HhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcccc--Ccc--c-cc
Confidence 566789999999999887311 100 00111234566777777777889999999998876332 111 1 55
Q ss_pred CCceeeeeceEEEEEEE
Q 017792 212 GGNALKFYASVRLNIKR 228 (366)
Q Consensus 212 gG~~l~~~ad~~i~l~~ 228 (366)
++..+.++||.++.+++
T Consensus 149 ~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 149 GAQNLEDIADTVIVLSR 165 (165)
T ss_pred CccceeeecceEEEEeC
Confidence 77789999999998863
No 96
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.51 E-value=7.8e-14 Score=124.07 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=94.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL- 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~--~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~- 131 (366)
+++|++++|.||||||||||++.+++.. .+..|. ++++++......+.+.+++.+|+..++...++.+.+......
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~-i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~ 110 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGE-VLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR 110 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceE-EEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc
Confidence 6799999999999999999999999988 777776 566665443334556789999988777667777765432210
Q ss_pred --------------HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCc-
Q 017792 132 --------------IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA- 196 (366)
Q Consensus 132 --------------~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~- 196 (366)
.-..+++++++|....-... .-.+ .+.++...+.+.+.|||+++|...
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~-------------~~~~----~l~~~l~~~~~~~~tiii~sh~~~~ 173 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDS-------------SSAL----QVMSLLRRLADTGRTIICSIHQPSS 173 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCH-------------HHHH----HHHHHHHHHHhCCCEEEEEecCchH
Confidence 01124667777776554410 0111 233333334445899999999764
Q ss_pred ccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 197 KLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 197 ~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
. +..+||+++.|..+.+
T Consensus 174 ~------------------~~~~~d~v~~l~~G~i 190 (194)
T cd03213 174 E------------------IFELFDKLLLLSQGRV 190 (194)
T ss_pred H------------------HHHhcCEEEEEeCCEE
Confidence 2 4456888888876543
No 97
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=2.6e-14 Score=138.14 Aligned_cols=160 Identities=15% Similarity=0.227 Sum_probs=111.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++...+ +...+.+|+.+|+..+++..++.+++.+......
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~ 107 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQ-IFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG 107 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC
Confidence 6799999999999999999999999999888886 6777765433 2345789999999988888898888765322100
Q ss_pred ----------cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-
Q 017792 134 ----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS- 182 (366)
Q Consensus 134 ----------~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~- 182 (366)
..-..++-+..+..-. ..++++ |++|+...||+++.. ++.+.+.+.
T Consensus 108 ~~~~~~~~~v~~~l~~~gl~~~~~r~-~~~LSg--Gq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 184 (351)
T PRK11432 108 VPKEERKQRVKEALELVDLAGFEDRY-VDQISG--GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ 184 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 0001111222222222 245555 899999999988764 444444443
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++|+|+++|..++ +..+||+++.|+++++...++
T Consensus 185 ~~g~tii~vTHd~~e------------------~~~laD~i~vm~~G~i~~~g~ 220 (351)
T PRK11432 185 QFNITSLYVTHDQSE------------------AFAVSDTVIVMNKGKIMQIGS 220 (351)
T ss_pred hcCCEEEEEcCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 459999999998765 445788888888877655443
No 98
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.51 E-value=2.4e-14 Score=139.48 Aligned_cols=159 Identities=13% Similarity=0.215 Sum_probs=110.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... +...+.+|+.+|+..+++..++.+++.+......
T Consensus 37 i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~ 115 (375)
T PRK09452 37 INNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGR-IMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK 115 (375)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcC
Confidence 6799999999999999999999999988887786 6677765432 2345679999999998888899888765321100
Q ss_pred ----------cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-
Q 017792 134 ----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS- 182 (366)
Q Consensus 134 ----------~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~- 182 (366)
..-...+-++.+..-. ...+++ |++|+...||+++.. |+.+.+.+.
T Consensus 116 ~~~~~~~~~~~~~l~~~~l~~~~~~~-p~~LSg--Gq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 192 (375)
T PRK09452 116 TPAAEITPRVMEALRMVQLEEFAQRK-PHQLSG--GQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQR 192 (375)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 0001122222222222 244555 899999999988764 555554443
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.++|+|+++|...+ +..+||+++.|.++++...+
T Consensus 193 ~~g~tiI~vTHd~~e------------------a~~laDri~vl~~G~i~~~g 227 (375)
T PRK09452 193 KLGITFVFVTHDQEE------------------ALTMSDRIVVMRDGRIEQDG 227 (375)
T ss_pred hcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEc
Confidence 469999999998765 45568888888887765544
No 99
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.51 E-value=2.7e-14 Score=138.55 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=112.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC--CeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQG--GYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g--g~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
+++|++++|+||||||||||++.+++...+.. |. ++++++...+ +...+.+|+.+|+..+++..++.+++.+....
T Consensus 28 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~-i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~ 106 (362)
T TIGR03258 28 IEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGR-IAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRA 106 (362)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEE-EEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHH
Confidence 67999999999999999999999999888877 86 6677665433 23456799999999888888998887653321
Q ss_pred Hhc----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 132 IRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 132 ~~~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
... .-...+-++.+..-. ...+++ |++|+...||+++.. |+.+...+
T Consensus 107 ~~~~~~~~~~~v~~~l~~~gL~~~~~~~-~~~LSg--Gq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l 183 (362)
T TIGR03258 107 QKMPKADIAERVADALKLVGLGDAAAHL-PAQLSG--GMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL 183 (362)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCchhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 100 001122223222222 234554 899999999988764 55555555
Q ss_pred hhc--CcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 182 SLS--QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 182 ~~~--~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
.+. |+|+|++||..++ +..+||+++.|++++++..++
T Consensus 184 ~~~~~g~til~vTHd~~e------------------a~~l~dri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 184 HEELPELTILCVTHDQDD------------------ALTLADKAGIMKDGRLAAHGE 222 (362)
T ss_pred HHhCCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 443 8999999998765 556789999998887665553
No 100
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=3.5e-14 Score=138.51 Aligned_cols=160 Identities=18% Similarity=0.200 Sum_probs=110.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++...+ +...+.+||.+|+..+++..++.+++.+......
T Consensus 42 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~-I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~ 120 (377)
T PRK11607 42 IYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQ-IMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK 120 (377)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence 6799999999999999999999999998888786 6777765432 3456789999999999988899888765322110
Q ss_pred c----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH-HHhh
Q 017792 134 S----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS-HSLS 182 (366)
Q Consensus 134 ~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~-~~l~ 182 (366)
. .-.+.+-+..+..-. ..++++ |++|+...||+++.. ++... ..++
T Consensus 121 ~~~~~~~~~v~~~l~~l~L~~~~~~~-~~~LSg--Gq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 197 (377)
T PRK11607 121 LPKAEIASRVNEMLGLVHMQEFAKRK-PHQLSG--GQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE 197 (377)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 001111122222222 234555 899999999988764 33333 3335
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++|+|+++|...+ +..+||+++.|+++++...++
T Consensus 198 ~~g~tii~vTHd~~e------------------a~~laDri~vl~~G~i~~~g~ 233 (377)
T PRK11607 198 RVGVTCVMVTHDQEE------------------AMTMAGRIAIMNRGKFVQIGE 233 (377)
T ss_pred hcCCEEEEEcCCHHH------------------HHHhCCEEEEEeCCEEEEEcC
Confidence 579999999997765 455788888888776655443
No 101
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=3.7e-14 Score=124.21 Aligned_cols=142 Identities=19% Similarity=0.236 Sum_probs=97.1
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-----CeEEEEeCCCCCCH-----HHHhhcccccCcceecCCCCHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-----GYCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGE 122 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g-----g~vl~id~e~~~~~-----~~~~~ig~~~~~~~~~~~~~~e 122 (366)
..||++++++|.||+|||||||++++........ |. +++++++..++ .+++++|+++|++..++ .++.
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~-v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIy 105 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGE-VLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIY 105 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEE-EEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHH
Confidence 4699999999999999999999999988776543 55 56677766552 67889999999887765 6666
Q ss_pred HHHHHHHHH-----------HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH------------------
Q 017792 123 QALSLVDTL-----------IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------ 173 (366)
Q Consensus 123 ~~l~~~~~~-----------~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------ 173 (366)
+++.+-.++ +...-...-.+|.+-.-+..+.+.-+.|++|+..+||+++-.
T Consensus 106 dNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT 185 (253)
T COG1117 106 DNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIST 185 (253)
T ss_pred HHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhH
Confidence 655443221 111111222345544333233333333899999999987643
Q ss_pred --HHHHHHHhhhcCcEEEEEecCCcc
Q 017792 174 --LRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 174 --L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
+..|...|+ .+-|||+++|.+..
T Consensus 186 ~kIEeLi~eLk-~~yTIviVTHnmqQ 210 (253)
T COG1117 186 LKIEELITELK-KKYTIVIVTHNMQQ 210 (253)
T ss_pred HHHHHHHHHHH-hccEEEEEeCCHHH
Confidence 677777776 58899999997654
No 102
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.50 E-value=3.9e-14 Score=128.15 Aligned_cols=155 Identities=15% Similarity=0.221 Sum_probs=102.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++|++++|.|+||||||||++.+++...+..|. +++++..... ..+.+.+++.+|+..++...++.+.+.......
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 106 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF-ATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY 106 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCce-EEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc
Confidence 6799999999999999999999999988888887 5566543322 344567999999987777778877765432211
Q ss_pred hcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
... -...+-++...... ...+++ |++++...+|+++.. +.++...+.
T Consensus 107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~ 183 (218)
T cd03266 107 GLKGDELTARLEELADRLGMEELLDRR-VGGFST--GMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR 183 (218)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHhhh-hhhcCH--HHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 000 00111111111111 123443 788888888877643 555555555
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+.++|||+++|.... +..+||+++.|.++++
T Consensus 184 ~~~~tii~~tH~~~~------------------~~~~~d~i~~l~~G~i 214 (218)
T cd03266 184 ALGKCILFSTHIMQE------------------VERLCDRVVVLHRGRV 214 (218)
T ss_pred HCCCEEEEEeCCHHH------------------HHHhcCEEEEEECCEE
Confidence 568999999997654 4557888888887654
No 103
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.50 E-value=3.4e-14 Score=127.41 Aligned_cols=154 Identities=17% Similarity=0.171 Sum_probs=99.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcce-ecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLL-LAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|.||||||||||++.+++...+..|. +++++.......+.+.+++.+|+.. .....++.+.+........
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~ 101 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLIKESSGS-ILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD 101 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC
Confidence 6799999999999999999999999988888887 5666654323345567899999853 2234566666543211100
Q ss_pred cC------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcCcE
Q 017792 134 SG------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQTI 187 (366)
Q Consensus 134 ~~------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~~t 187 (366)
.. -...+-++....-. ...+++ |++|+...||++... +..+...+++.+.|
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 178 (205)
T cd03226 102 AGNEQAETVLKDLDLYALKERH-PLSLSG--GQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178 (205)
T ss_pred ccHHHHHHHHHHcCCchhcCCC-chhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCE
Confidence 00 00111111111111 134444 888888888887764 55666555556899
Q ss_pred EEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEec
Q 017792 188 LIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 230 (366)
Q Consensus 188 VI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~ 230 (366)
||+++|..+. +..+||+++.|+++.
T Consensus 179 ii~~sH~~~~------------------~~~~~d~i~~l~~G~ 203 (205)
T cd03226 179 VIVITHDYEF------------------LAKVCDRVLLLANGA 203 (205)
T ss_pred EEEEeCCHHH------------------HHHhCCEEEEEECCE
Confidence 9999997664 455788888887653
No 104
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=9.5e-14 Score=127.48 Aligned_cols=158 Identities=20% Similarity=0.182 Sum_probs=102.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++...++.+.+...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 102 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGS-VLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSG 102 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCce-EEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhh
Confidence 6799999999999999999999999988877787 5666654321 23456789999988777777877766431
Q ss_pred HH--------HHhcC-C---------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 129 DT--------LIRSG-S---------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 129 ~~--------~~~~~-~---------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
.. +.... . ...+-+....... ...+++ |++|+...||+++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 179 (241)
T cd03256 103 RLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-ADQLSG--GQQQRVAIARALMQQPKLILADEPVASLDPAS 179 (241)
T ss_pred hcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 10 00000 0 0001011111111 234444 888888888887653
Q ss_pred ---HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ .++|||+++|..+. +..+||+++.|.++.++..
T Consensus 180 ~~~l~~~l~~~~~~~~~tii~~tH~~~~------------------~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 180 SRQVMDLLKRINREEGITVIVSLHQVDL------------------AREYADRIVGLKDGRIVFD 226 (241)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEee
Confidence 5555555443 58999999997764 5557899999987765443
No 105
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.49 E-value=5.6e-14 Score=128.63 Aligned_cols=158 Identities=17% Similarity=0.162 Sum_probs=103.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHH-HhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSL-AETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~-~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+ ...+++.+|+..++...++.+.+.....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~ 101 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGS-VLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQ 101 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCce-EEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHh
Confidence 6799999999999999999999999988877786 5666653322 122 3458999999887777788777654321
Q ss_pred HHhcC--------------------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 131 LIRSG--------------------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 131 ~~~~~--------------------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
..... -...+-++...... ...+++ |++|+...||++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 178 (236)
T cd03219 102 ARTGSGLLLARARREEREARERAEELLERVGLADLADRP-AGELSY--GQQRRLEIARALATDPKLLLLDEPAAGLNPEE 178 (236)
T ss_pred hccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 10000 00011111111111 133444 788888888877653
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+.++|||+++|..+. +..+||+++.|+++.+...
T Consensus 179 ~~~l~~~l~~~~~~~~tii~vsH~~~~------------------~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 179 TEELAELIRELRERGITVLLVEHDMDV------------------VMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCHHH------------------HHHhCCEEEEEeCCEEEee
Confidence 555555555578999999997664 5567899999987765443
No 106
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=7.3e-14 Score=121.93 Aligned_cols=137 Identities=16% Similarity=0.229 Sum_probs=95.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHH-------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQAL------- 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l------- 125 (366)
+++|++++|+|+||||||||++.+++.+.+..|. ++++++.... ..+.+.+++.+|+..++...++.+.+
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~ 101 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE-IKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK 101 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHH
Confidence 6799999999999999999999999988877776 5666543322 34456789999988777666666653
Q ss_pred ---HHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc
Q 017792 126 ---SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG 202 (366)
Q Consensus 126 ---~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~ 202 (366)
.++..+. .+++++++|...+-... ...+.+.+.|+.+ .+.+.|||+++|....
T Consensus 102 qrv~laral~--~~p~illlDEPt~~LD~-------------~~~~~l~~~l~~~----~~~g~tiii~th~~~~----- 157 (173)
T cd03230 102 QRLALAQALL--HDPELLILDEPTSGLDP-------------ESRREFWELLREL----KKEGKTILLSSHILEE----- 157 (173)
T ss_pred HHHHHHHHHH--cCCCEEEEeCCccCCCH-------------HHHHHHHHHHHHH----HHCCCEEEEECCCHHH-----
Confidence 2222232 46899999998776620 1122333444444 3348999999997654
Q ss_pred CCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 203 FGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 203 ~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
+..+||+++.|+++
T Consensus 158 -------------~~~~~d~i~~l~~g 171 (173)
T cd03230 158 -------------AERLCDRVAILNNG 171 (173)
T ss_pred -------------HHHhCCEEEEEeCC
Confidence 45578888887754
No 107
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.49 E-value=5.5e-14 Score=126.24 Aligned_cols=155 Identities=19% Similarity=0.163 Sum_probs=100.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|.|+||||||||++.+++...+..|. ++++++.... ..+.+.+++.+|+..++...++.+.+........
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 101 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGE-ITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG 101 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC
Confidence 6799999999999999999999999988877786 5666654322 3345678999998877777788777654321100
Q ss_pred cCC------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcCcE
Q 017792 134 SGS------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQTI 187 (366)
Q Consensus 134 ~~~------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~~t 187 (366)
... ...+-++...... ...+++ |++|+...+|+++.. +.++...+++.+.|
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 178 (208)
T cd03268 102 IRKKRIDEVLDVVGLKDSAKKK-VKGFSL--GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178 (208)
T ss_pred CcHHHHHHHHHHcCCHHHHhhh-HhhCCH--HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 000 0011111111111 123443 777777777776653 55555555557899
Q ss_pred EEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 188 LIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 188 VI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
||+++|.... +..+||+++.|+++.+
T Consensus 179 ii~~tH~~~~------------------~~~~~d~v~~l~~g~i 204 (208)
T cd03268 179 VLISSHLLSE------------------IQKVADRIGIINKGKL 204 (208)
T ss_pred EEEEcCCHHH------------------HHHhcCEEEEEECCEE
Confidence 9999997654 4557888888887653
No 108
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=3.7e-14 Score=127.82 Aligned_cols=155 Identities=18% Similarity=0.243 Sum_probs=100.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+|+||||||||++.+++.+.+..|. ++++++.... ....+.+++.+|+..++...++.+.+........
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 101 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGE-ILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG 101 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC
Confidence 7799999999999999999999999988887887 5666553322 2234578999998877766777776643221100
Q ss_pred -------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh
Q 017792 134 -------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL 183 (366)
Q Consensus 134 -------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~ 183 (366)
. .-...+-++....-. ...+++ |++|+...||+++.. +.++...+.+
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03259 102 VPKAEIRARVRELLELVGLEGLLNRY-PHELSG--GQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178 (213)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhcC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 000111111111111 134444 888888888887654 5555555444
Q ss_pred -cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 184 -SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 184 -~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
.+.|||+++|.... +..+||+++.|.++.+
T Consensus 179 ~~~~tii~~sH~~~~------------------~~~~~d~v~~l~~G~i 209 (213)
T cd03259 179 ELGITTIYVTHDQEE------------------ALALADRIAVMNEGRI 209 (213)
T ss_pred HcCCEEEEEecCHHH------------------HHHhcCEEEEEECCEE
Confidence 58999999997654 5567899998887654
No 109
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.49 E-value=3.7e-14 Score=137.26 Aligned_cols=160 Identities=18% Similarity=0.245 Sum_probs=109.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+.+|++++|+||||||||||++.+++...+..|. ++++++.... ....+.++|.+|+..+++..++.+++.+......
T Consensus 25 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~-I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~ 103 (353)
T PRK10851 25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH-IRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLP 103 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcc
Confidence 6699999999999999999999999998888887 6677664432 2344679999999888888888877764321100
Q ss_pred ---cC-----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 134 ---SG-----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 134 ---~~-----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
.. -.+.+-++.+..-. ..++++ |++|+...||+++.. ++.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LSg--Gq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~ 180 (353)
T PRK10851 104 RRERPNAAAIKAKVTQLLEMVQLAHLADRY-PAQLSG--GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLR 180 (353)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 00 01111122222212 234554 889999999988764 555555
Q ss_pred Hhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 180 SLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 180 ~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
.+.+ .++|+|+++|...+ +..+||+++.|+++.++..++
T Consensus 181 ~l~~~~g~tii~vTHd~~e------------------a~~~~Dri~vl~~G~i~~~g~ 220 (353)
T PRK10851 181 QLHEELKFTSVFVTHDQEE------------------AMEVADRVVVMSQGNIEQAGT 220 (353)
T ss_pred HHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 5444 58999999998765 455788888898877655543
No 110
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=5.9e-14 Score=135.57 Aligned_cols=159 Identities=18% Similarity=0.245 Sum_probs=105.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---H---HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~---~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... . .+.+.+|+.+|+..++...++.+.+.+.
T Consensus 28 i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~ 106 (343)
T PRK11153 28 IPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR-VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALP 106 (343)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHH
Confidence 6799999999999999999999999998888887 5666554322 1 2356799999998877777887776543
Q ss_pred HHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
....... -...+-++...... ...+++ |++|+...||+++.. +..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L 183 (343)
T PRK11153 107 LELAGTPKAEIKARVTELLELVGLSDKADRY-PAQLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183 (343)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 2211000 00111111111111 234544 888888888887764 55555
Q ss_pred HHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 179 HSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 179 ~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+.+ .++|||+++|..+. +..+||+++.|.++.++..+
T Consensus 184 ~~l~~~~g~tiilvtH~~~~------------------i~~~~d~v~~l~~G~i~~~g 223 (343)
T PRK11153 184 KDINRELGLTIVLITHEMDV------------------VKRICDRVAVIDAGRLVEQG 223 (343)
T ss_pred HHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEc
Confidence 55543 58999999998765 55578888888877765543
No 111
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=8.7e-14 Score=126.10 Aligned_cols=158 Identities=15% Similarity=0.174 Sum_probs=102.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+.+|++++|+|+||||||||++.+++.+.+..|. ++++++.... ..+.+.+++.+|+..+....++.+.+.......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 101 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGR-ATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY 101 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc
Confidence 6799999999999999999999999988887787 5566543321 344567899999987777677777665432110
Q ss_pred hcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
... -...+-++...... ...+++ |++|+...++++... +..+...+.
T Consensus 102 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 178 (220)
T cd03265 102 GVPGAERRERIDELLDFVGLLEAADRL-VKTYSG--GMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK 178 (220)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 000 00111111111111 133444 788888888776643 445444444
Q ss_pred h-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 183 L-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 183 ~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+ ++++||+++|.... +..+||+++.|.++.+...
T Consensus 179 ~~~~~tvi~~tH~~~~------------------~~~~~d~i~~l~~G~i~~~ 213 (220)
T cd03265 179 EEFGMTILLTTHYMEE------------------AEQLCDRVAIIDHGRIIAE 213 (220)
T ss_pred HhcCCEEEEEeCCHHH------------------HHHhCCEEEEEeCCEEEEe
Confidence 4 48999999997664 5567898888887765443
No 112
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.49 E-value=4.9e-14 Score=133.86 Aligned_cols=159 Identities=17% Similarity=0.230 Sum_probs=109.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++|++++|.||||||||||++.+++...+..|. +++++..... ..+.+.+|+.+|+..++...++.+.+.+...+.
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~-i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~ 103 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGS-VQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY 103 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc
Confidence 7799999999999999999999999988888887 5666654322 345567999999988887788888876543321
Q ss_pred hcC------C----ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSG------S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~------~----~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
... . ...+-++....-. ...+++ |++|+...|++++.. ++.+.+.++
T Consensus 104 ~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~ 180 (301)
T TIGR03522 104 GMKGQLLKQRVEEMIELVGLRPEQHKK-IGQLSK--GYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG 180 (301)
T ss_pred CCCHHHHHHHHHHHHHHCCCchHhcCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc
Confidence 100 0 0011111111111 123443 778887888777653 666666665
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+ +.|||+++|..++ +..+||+++.|+++.+...++
T Consensus 181 ~-~~tiii~sH~l~~------------------~~~~~d~i~~l~~G~i~~~g~ 215 (301)
T TIGR03522 181 K-DKTIILSTHIMQE------------------VEAICDRVIIINKGKIVADKK 215 (301)
T ss_pred C-CCEEEEEcCCHHH------------------HHHhCCEEEEEECCEEEEeCC
Confidence 4 7999999998875 667899999999887766554
No 113
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=4.7e-14 Score=126.91 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=100.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+.+|++++|+|+||||||||++.+++...+..|. +++++.... ..+.+.+++.+|+..++...++.+.+.........
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 100 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE-VLFDGKPLD-IAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGL 100 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCCchh-HHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCC
Confidence 6799999999999999999999999988877787 566665432 24456789999988777777887776543221100
Q ss_pred C----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhc
Q 017792 135 G----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLS 184 (366)
Q Consensus 135 ~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~ 184 (366)
. -...+-++...... ...+++ |++++...+++++.. +.++...+.+.
T Consensus 101 ~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~ 177 (210)
T cd03269 101 KKEEARRRIDEWLERLELSEYANKR-VEELSK--GNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA 177 (210)
T ss_pred ChHHHHHHHHHHHHHcCChHHHhCc-HhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 0 00001111111111 123443 777777777776543 55555555556
Q ss_pred CcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 185 QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 185 ~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
++|||+++|.... +..+||+++.|.++.+
T Consensus 178 ~~tii~~sH~~~~------------------~~~~~d~i~~l~~g~i 206 (210)
T cd03269 178 GKTVILSTHQMEL------------------VEELCDRVLLLNKGRA 206 (210)
T ss_pred CCEEEEECCCHHH------------------HHHhhhEEEEEeCCEE
Confidence 8999999997654 5567888888876643
No 114
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=6.1e-14 Score=122.99 Aligned_cols=138 Identities=20% Similarity=0.291 Sum_probs=93.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC-----CHHHHhhcccccCcceecCCCCHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQALS--- 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~-----~~~~~~~ig~~~~~~~~~~~~~~e~~l~--- 126 (366)
+++|++++|.|+||||||||++.+++.+.+..|. +++++.... ...+.+.+++.+|+..++...++.+.+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS-ILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence 6799999999999999999999999988877777 556554321 1345667899999877766666665532
Q ss_pred ---------HHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcc
Q 017792 127 ---------LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 127 ---------~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
++..++ .+++++++|...+-.. . .....+.+.|+++. ++.+.|+|+++|....
T Consensus 102 S~G~~qr~~la~al~--~~p~llilDEP~~~LD----------~---~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~ 163 (178)
T cd03229 102 SGGQQQRVALARALA--MDPDVLLLDEPTSALD----------P---ITRREVRALLKSLQ---AQLGITVVLVTHDLDE 163 (178)
T ss_pred CHHHHHHHHHHHHHH--CCCCEEEEeCCcccCC----------H---HHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH
Confidence 222232 3678999998876652 0 11122333343333 2238999999997654
Q ss_pred cccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 198 LSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 198 ~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
+..+||.++.|.++
T Consensus 164 ------------------~~~~~d~i~~l~~g 177 (178)
T cd03229 164 ------------------AARLADRVVVLRDG 177 (178)
T ss_pred ------------------HHHhcCEEEEEeCC
Confidence 45567888877643
No 115
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=7.9e-14 Score=127.46 Aligned_cols=158 Identities=17% Similarity=0.222 Sum_probs=103.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---H---HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~---~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... . .+.+.+++.+|+..++...++.+.+...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~ 106 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS-VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP 106 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHH
Confidence 6799999999999999999999999998888887 5666654321 1 2356789999998877767877766542
Q ss_pred HHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
....... -...+-++...... ...+++ |++|+...+|+++.. +.++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l 183 (233)
T cd03258 107 LEIAGVPKAEIEERVLELLELVGLEDKADAY-PAQLSG--GQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL 183 (233)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHH
Confidence 2110000 00111111111111 133444 788888888877653 55555
Q ss_pred HHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 179 HSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 179 ~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
..+++ .++|||+++|..+. +..+||+++.|+++.+...
T Consensus 184 ~~~~~~~~~tvii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 222 (233)
T cd03258 184 RDINRELGLTIVLITHEMEV------------------VKRICDRVAVMEKGEVVEE 222 (233)
T ss_pred HHHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 55544 48999999997654 5567899999987765443
No 116
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.48 E-value=1.5e-13 Score=126.36 Aligned_cols=157 Identities=18% Similarity=0.192 Sum_probs=100.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... ..+.+.+++.+|+..++...++.+.+...
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 103 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGS-ILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHG 103 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccE-EEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhc
Confidence 6799999999999999999999999988887887 5666543221 12456799999988777767777665421
Q ss_pred HH--------HHhcC------C----ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 129 DT--------LIRSG------S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 129 ~~--------~~~~~------~----~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
.. +.... . ...+-++...... ...+++ |++|+...||+++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 180 (243)
T TIGR02315 104 RLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-ADQLSG--GQQQRVAIARALAQQPDLILADEPIASLDPKT 180 (243)
T ss_pred ccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 00 00000 0 0011111111111 234444 888888888887653
Q ss_pred ---HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 ---LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 ---L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+..+...+.+ .++|||+++|..+. +..+||.++.|.++.++.
T Consensus 181 ~~~l~~~l~~~~~~~~~tiii~tH~~~~------------------~~~~~d~v~~l~~G~i~~ 226 (243)
T TIGR02315 181 SKQVMDYLKRINKEDGITVIINLHQVDL------------------AKKYADRIVGLKAGEIVF 226 (243)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHH------------------HHHhcCeEEEEECCEEEe
Confidence 4455554443 58999999997654 556789999998765443
No 117
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.48 E-value=8.5e-14 Score=127.10 Aligned_cols=156 Identities=14% Similarity=0.177 Sum_probs=102.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HH-HHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PS-LAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~-~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+.+|++++|+|+||||||||++.+++...+..|. ++++++.... .. ....+++.+|+..++...++.+.+.....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 101 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK-ILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLE 101 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHH
Confidence 6799999999999999999999999998888887 5666654321 12 23468999998877777788776654321
Q ss_pred HHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 131 LIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 131 ~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
..... -...+-++....-. ...+++ |++|+...+|+++.. +.++...
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 178 (232)
T cd03218 102 IRGLSKKEREEKLEELLEEFHITHLRKSK-ASSLSG--GERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178 (232)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 10000 00011111111111 123443 788888888877653 5555555
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+.+.+.|||+++|..+. +..+||+++.|+++.+.
T Consensus 179 ~~~~~~tii~~sH~~~~------------------~~~~~d~i~~l~~G~i~ 212 (232)
T cd03218 179 LKDRGIGVLITDHNVRE------------------TLSITDRAYIIYEGKVL 212 (232)
T ss_pred HHHCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCeEE
Confidence 55668999999997654 56678999999876544
No 118
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.48 E-value=8.8e-14 Score=127.76 Aligned_cols=158 Identities=19% Similarity=0.217 Sum_probs=104.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++...++.+.+....
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 102 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGD-LIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP 102 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHH
Confidence 6799999999999999999999999988887786 6677654322 234567899999887776677777664321
Q ss_pred HHHhcC-----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 130 TLIRSG-----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 130 ~~~~~~-----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
...... -...+-++...... ...+++ |++++...||+++.. +.++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l 179 (240)
T PRK09493 103 LRVRGASKEEAEKQARELLAKVGLAERAHHY-PSELSG--GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVM 179 (240)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCChHHHhcC-hhhcCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 100000 00111111111111 123443 788888888887654 55566
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
..+++.+.|||+++|.... +..+||+++.|.++.++..
T Consensus 180 ~~~~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 217 (240)
T PRK09493 180 QDLAEEGMTMVIVTHEIGF------------------AEKVASRLIFIDKGRIAED 217 (240)
T ss_pred HHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEee
Confidence 5555668999999997764 5567899999987765443
No 119
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.47 E-value=2.4e-14 Score=127.69 Aligned_cols=144 Identities=19% Similarity=0.246 Sum_probs=108.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI-- 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~-- 132 (366)
+|+|++.++.|+||+||||+.+.+++.+.+..|.+-|.+.+ .......++||.|+.--+++..++.+.+.++..+.
T Consensus 25 v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~--~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm 102 (300)
T COG4152 25 VPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGP--LSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGM 102 (300)
T ss_pred ecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcc--hhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCC
Confidence 78999999999999999999999999999988886665543 34455678999999888888888877655543311
Q ss_pred ------------------------------------------hcCCceEEEEecccccC-CCCccCCccchhhHHHHHHH
Q 017792 133 ------------------------------------------RSGSVDVVVVDSVAALV-PKGELDGEMGDAHMAMQARL 169 (366)
Q Consensus 133 ------------------------------------------~~~~~~lvviDsl~~l~-~~~~l~~~~g~~~~~~~ar~ 169 (366)
--+.+.++++|...+-. | ...
T Consensus 103 ~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDP--------------VN~-- 166 (300)
T COG4152 103 PKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP--------------VNV-- 166 (300)
T ss_pred cHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCCh--------------hhH--
Confidence 01346667776543322 1 111
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 170 MSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 170 l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.|+.....+++.|.||||++|.++. ++.+||.++.|++++.+..|+
T Consensus 167 --elLk~~I~~lk~~GatIifSsH~Me~------------------vEeLCD~llmL~kG~~V~~G~ 213 (300)
T COG4152 167 --ELLKDAIFELKEEGATIIFSSHRMEH------------------VEELCDRLLMLKKGQTVLYGT 213 (300)
T ss_pred --HHHHHHHHHHHhcCCEEEEecchHHH------------------HHHHhhhhheecCCceEEecc
Confidence 34667777778899999999998876 677899999999998777764
No 120
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.47 E-value=1.7e-13 Score=119.54 Aligned_cols=135 Identities=23% Similarity=0.293 Sum_probs=92.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHH-------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQA------- 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~------- 124 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... ..+.+.+++.+|+..++. .++.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~lLS~G~~ 102 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGR-VRLDGADISQWDPNELGDHVGYLPQDDELFS-GSIAENILSGGQR 102 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCe-EEECCEEcccCCHHHHHhheEEECCCCcccc-CcHHHHCcCHHHH
Confidence 6799999999999999999999999998888786 5666654322 245667899999886665 365544
Q ss_pred --HHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc
Q 017792 125 --LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG 202 (366)
Q Consensus 125 --l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~ 202 (366)
+.++..+. .+++++++|...+-... .-.+.+...|+.+ ++.++|||+++|....
T Consensus 103 qrv~la~al~--~~p~~lllDEPt~~LD~-------------~~~~~l~~~l~~~----~~~~~tii~~sh~~~~----- 158 (173)
T cd03246 103 QRLGLARALY--GNPRILVLDEPNSHLDV-------------EGERALNQAIAAL----KAAGATRIVIAHRPET----- 158 (173)
T ss_pred HHHHHHHHHh--cCCCEEEEECCccccCH-------------HHHHHHHHHHHHH----HhCCCEEEEEeCCHHH-----
Confidence 22233333 36889999998766520 1112233334333 3458999999997643
Q ss_pred CCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 203 FGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 203 ~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
+. +||+++.|.++
T Consensus 159 -------------~~-~~d~v~~l~~G 171 (173)
T cd03246 159 -------------LA-SADRILVLEDG 171 (173)
T ss_pred -------------HH-hCCEEEEEECC
Confidence 43 58888888754
No 121
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.47 E-value=6e-14 Score=126.89 Aligned_cols=153 Identities=20% Similarity=0.230 Sum_probs=99.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H----H-HHhhcccccCcceecCCCCHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----S-LAETIGVKTENLLLAQPDCGEQALS 126 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~----~-~~~~ig~~~~~~~~~~~~~~e~~l~ 126 (366)
-+++|++++|+||||||||||++.+++.+.+..|. +++++..... . . +.+.+++.+|+..++...++.+.+.
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 104 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE-VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVE 104 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCcee-EEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHH
Confidence 37799999999999999999999999998888887 5666543321 1 1 2456999999888777778877765
Q ss_pred HHHHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 127 LVDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 127 ~~~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
+........ -...+-++....-. ...+++ |++|+...||+++.. +.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~ 181 (218)
T cd03255 105 LPLLLAGVPKKERRERAEELLERVGLGDRLNHY-PSELSG--GQQQRVAIARALANDPKIILADEPTGNLDSETGKEVME 181 (218)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcC-hhhcCH--HHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHH
Confidence 432110000 00011111111111 123443 788888888877643 555
Q ss_pred HHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 177 LSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 177 L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
+...+.+ .++|||+++|..+. +. +||+++.|.++
T Consensus 182 ~l~~~~~~~~~tii~~sH~~~~------------------~~-~~d~v~~l~~G 216 (218)
T cd03255 182 LLRELNKEAGTTIVVVTHDPEL------------------AE-YADRIIELRDG 216 (218)
T ss_pred HHHHHHHhcCCeEEEEECCHHH------------------Hh-hhcEEEEeeCC
Confidence 5555554 58999999997653 44 68888888764
No 122
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.47 E-value=6.6e-14 Score=135.68 Aligned_cols=159 Identities=17% Similarity=0.208 Sum_probs=105.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... ....+.+++.+|+..+++..++.+.+.+
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~-I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 99 (352)
T PRK11144 21 LPAQGITAIFGRSGAGKTSLINAISGLTRPQKGR-IVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRY 99 (352)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHh
Confidence 6799999999999999999999999988887786 5666654321 2345679999999888887888877654
Q ss_pred HHHHHhc----CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-
Q 017792 128 VDTLIRS----GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS- 182 (366)
Q Consensus 128 ~~~~~~~----~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~- 182 (366)
....... .-...+-++...... ...+++ |++|+...||+++.. +..+.+.+.
T Consensus 100 ~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSg--Gq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~ 176 (352)
T PRK11144 100 GMAKSMVAQFDKIVALLGIEPLLDRY-PGSLSG--GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAR 176 (352)
T ss_pred hhhhhhHHHHHHHHHHcCCchhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 2110000 001111122222222 234554 888888888887754 445554444
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.++|||+++|..+. +..+||+++.|+++++...+
T Consensus 177 ~~g~tii~vTHd~~~------------------~~~~~d~i~~l~~G~i~~~g 211 (352)
T PRK11144 177 EINIPILYVSHSLDE------------------ILRLADRVVVLEQGKVKAFG 211 (352)
T ss_pred hcCCeEEEEecCHHH------------------HHHhCCEEEEEeCCEEEEec
Confidence 358999999998765 45567888888777655443
No 123
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.47 E-value=1.6e-13 Score=126.70 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=102.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-----------HHHHhhcccccCcceecCCCCHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-----------PSLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-----------~~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++...++.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGT-IRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLE 104 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHH
Confidence 6799999999999999999999999988777776 5566543211 234567899999987777777777
Q ss_pred HHHHHHHHHhcCC-----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 124 ALSLVDTLIRSGS-----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 124 ~l~~~~~~~~~~~-----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
.+........... ...+-++....-. ...+++ |++|+...||+++..
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 181 (250)
T PRK11264 105 NIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSY-PRRLSG--GQQQRVAIARALAMRPEVILFDEPTSALDPELVG 181 (250)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCC-hhhCCh--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 6643211100000 0000111111111 233444 888888888887643
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.++...+.+.+.+||+++|.... +..+||+++.|+++.+..
T Consensus 182 ~l~~~l~~~~~~~~tvi~~tH~~~~------------------~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 182 EVLNTIRQLAQEKRTMVIVTHEMSF------------------ARDVADRAIFMDQGRIVE 224 (250)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhcCEEEEEECCEEEE
Confidence 555555555568999999997654 556789999998765443
No 124
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.47 E-value=2e-13 Score=124.25 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=104.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHh---hcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~---~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
=+.+|++++|+||||||||||++.+++.+. +..|. +++++.......+.+.+++.+|+..++...++.+.+.+...
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~-i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 107 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQ-ILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAI 107 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceE-EEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHH
Confidence 377999999999999999999999999887 66776 56666543333456678999999887777788877764322
Q ss_pred HHh-cCCc------eE-E-EEecc--cccC--CCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 131 LIR-SGSV------DV-V-VVDSV--AALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 131 ~~~-~~~~------~l-v-viDsl--~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
... .... .. . .++.+ ..+. ....+++ |++|+...+|+++.. +..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~--G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~ 185 (226)
T cd03234 108 LRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISG--GERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVST 185 (226)
T ss_pred hhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCH--HHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 110 0000 00 0 11111 0111 0123443 788888888887753 5555
Q ss_pred HHHhhhcCcEEEEEecCCc-ccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 178 SHSLSLSQTILIFINQVRA-KLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~-~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
...+.+.+.|||+++|... . +..+||+++.|.+++++
T Consensus 186 l~~~~~~~~tiii~sh~~~~~------------------~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 186 LSQLARRNRIVILTIHQPRSD------------------LFRLFDRILLLSSGEIV 223 (226)
T ss_pred HHHHHHCCCEEEEEecCCCHH------------------HHHhCCEEEEEeCCEEE
Confidence 5555556899999999752 3 56678999888876543
No 125
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.47 E-value=7.8e-14 Score=135.93 Aligned_cols=159 Identities=17% Similarity=0.223 Sum_probs=107.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... ....+.++|.+|+..++...++.+.+.+......
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~-I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~ 104 (369)
T PRK11000 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD-LFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG 104 (369)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC
Confidence 6799999999999999999999999988888786 5666654322 2234679999999888888888887764322100
Q ss_pred cC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-
Q 017792 134 SG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS- 182 (366)
Q Consensus 134 ~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~- 182 (366)
.. -...+-++....-. ...+++ |++|+...||+++.. ++.+.+.+.
T Consensus 105 ~~~~~~~~~~~~~l~~lgL~~~~~~~-~~~LSg--Gq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~ 181 (369)
T PRK11000 105 AKKEEINQRVNQVAEVLQLAHLLDRK-PKALSG--GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (369)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 00 01111122211111 234554 889999999988764 444444443
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+.|+|+++|..+. +..+||+++.|+++.+...+
T Consensus 182 ~~g~tvI~vTHd~~~------------------~~~~~d~i~vl~~G~i~~~g 216 (369)
T PRK11000 182 RLGRTMIYVTHDQVE------------------AMTLADKIVVLDAGRVAQVG 216 (369)
T ss_pred HhCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEc
Confidence 459999999997765 45578888888877665544
No 126
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.47 E-value=9.6e-14 Score=125.14 Aligned_cols=153 Identities=18% Similarity=0.279 Sum_probs=99.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+|+||||||||++.+++.+.+..|. ++++++.... ..+.+.+++.+|+..++...++.+.+...
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~ 102 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGT-IRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFA 102 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHH
Confidence 6799999999999999999999999988877786 5666654321 13456799999998777777777766543
Q ss_pred HHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
....... -...+-++...... ...+++ |++|+...||+++.. +.++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 179 (214)
T cd03292 103 LEVTGVPPREIRKRVPAALELVGLSHKHRAL-PAELSG--GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL 179 (214)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-hhhcCH--HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 2110000 00011111111111 133444 788888888887643 55555
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
..+++.++|||+++|.... +..+||.++.|.++
T Consensus 180 ~~~~~~~~tiiivtH~~~~------------------~~~~~d~i~~l~~G 212 (214)
T cd03292 180 KKINKAGTTVVVATHAKEL------------------VDTTRHRVIALERG 212 (214)
T ss_pred HHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEeCC
Confidence 5555568999999997654 45578888888754
No 127
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.47 E-value=2.3e-13 Score=126.37 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=105.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC------------C----HHHHhhcccccCcceecC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------------D----PSLAETIGVKTENLLLAQ 117 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~------------~----~~~~~~ig~~~~~~~~~~ 117 (366)
-+++|++++|+|+||||||||++.+++...+..|. ++++++... . ..+.+.+++.+|+..++.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 105 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGS-IVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS 105 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCC
Confidence 37799999999999999999999999988877776 566665331 1 234567999999988777
Q ss_pred CCCHHHHHHHHH-HHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-------------
Q 017792 118 PDCGEQALSLVD-TLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------- 173 (366)
Q Consensus 118 ~~~~e~~l~~~~-~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------- 173 (366)
..++.+.+.... ...... -...+-+.....-.+...+++ |++|+...+|+++..
T Consensus 106 ~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEPt~~L 183 (257)
T PRK10619 106 HMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSG--GQQQRVSIARALAMEPEVLLFDEPTSAL 183 (257)
T ss_pred CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 778877764311 100000 001111111100011234444 888888888887754
Q ss_pred -------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 -------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 -------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+++.++|||+++|.... +..+||+++.|.++.++..
T Consensus 184 D~~~~~~l~~~l~~l~~~g~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 184 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGF------------------ARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhcCEEEEEECCEEEEe
Confidence 556666666679999999997654 5567899999987765443
No 128
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=2.5e-13 Score=120.63 Aligned_cols=141 Identities=14% Similarity=0.126 Sum_probs=91.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL- 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~- 131 (366)
+.+|++++|+|+||||||||++.+++... +..|. ++++++... ..+.+.+++.+|+..++...++.+.+......
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~-i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 107 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGE-ILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR 107 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceE-EEECCEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHHh
Confidence 67999999999999999999999988653 45665 567765433 34456789999887777667887776542110
Q ss_pred -H-------------hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcc
Q 017792 132 -I-------------RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 132 -~-------------~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
+ -..+++++++|...+-... ...+. +..+...+++.++|||+++|..+.
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~-------------~~~~~----l~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS-------------QAAYN----IVRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCH-------------HHHHH----HHHHHHHHHHcCCEEEEEEcCChH
Confidence 0 1124677777776655420 01122 333333334458999999997641
Q ss_pred cccccCCCCeeeccCCceeeeeceEEEEEEE-ece
Q 017792 198 LSTFGFGGPTEVTCGGNALKFYASVRLNIKR-IGL 231 (366)
Q Consensus 198 ~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~-~~~ 231 (366)
.+..+||+++.|.+ +.+
T Consensus 171 -----------------~~~~~~d~i~~l~~~g~i 188 (192)
T cd03232 171 -----------------SIFEKFDRLLLLKRGGKT 188 (192)
T ss_pred -----------------HHHhhCCEEEEEcCCCeE
Confidence 03446788888876 443
No 129
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.46 E-value=8.2e-14 Score=125.63 Aligned_cols=154 Identities=21% Similarity=0.217 Sum_probs=99.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
-+++|++++|+||||||||||++.+++...+..|. +++++..... ..+.+.+++.+|+..++...++.+.+..
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 102 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQ-VRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVAL 102 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHH
Confidence 37799999999999999999999999988877787 5666553321 1245678999998877766777776654
Q ss_pred HHHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
........ -...+-+....... ...+++ |++|+...||+++.. +.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 179 (214)
T TIGR02673 103 PLEVRGKKEREIQRRVGAALRQVGLEHKADAF-PEQLSG--GEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDL 179 (214)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 32110000 00000011110001 123444 788888888877653 5566
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
...+++.+.|||+++|.... +..+||+++.|.++
T Consensus 180 l~~~~~~~~tii~~tH~~~~------------------~~~~~d~i~~l~~G 213 (214)
T TIGR02673 180 LKRLNKRGTTVIVATHDLSL------------------VDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHcCCEEEEEeCCHHH------------------HHHhcCEEEEecCC
Confidence 65555568999999997664 55568888877653
No 130
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.46 E-value=2.2e-13 Score=117.92 Aligned_cols=162 Identities=17% Similarity=0.198 Sum_probs=97.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHH--
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLV-- 128 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~-- 128 (366)
-+|+|.++.|.||||+|||||+..++.++.+..|. +++++.+.. ...+++.+.+.-|...+....|+++++.+-
T Consensus 23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~-i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRf 101 (252)
T COG4604 23 DIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE-ITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRF 101 (252)
T ss_pred eecCCceeEEECCCCccHHHHHHHHHHhccccCce-EEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCC
Confidence 38899999999999999999988888887777775 788776543 367888887766655444444444443221
Q ss_pred ---------------HH----------------HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHH
Q 017792 129 ---------------DT----------------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 177 (366)
Q Consensus 129 ---------------~~----------------~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L 177 (366)
.. -++.++.+..+|.-+.+--...-+.++|-.......+..+.+.|+++
T Consensus 102 PYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrl 181 (252)
T COG4604 102 PYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRL 181 (252)
T ss_pred cccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHH
Confidence 00 01122222211111111111111111221112223444455567776
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
.. +.|.||+++-|.... .+-|+|.++-|++++++++|.+
T Consensus 182 a~---el~KtiviVlHDINf------------------AS~YsD~IVAlK~G~vv~~G~~ 220 (252)
T COG4604 182 AD---ELGKTIVVVLHDINF------------------ASCYSDHIVALKNGKVVKQGSP 220 (252)
T ss_pred HH---HhCCeEEEEEecccH------------------HHhhhhheeeecCCEEEecCCH
Confidence 64 569999999996643 4558999999999988887754
No 131
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.46 E-value=1.7e-13 Score=123.41 Aligned_cols=153 Identities=19% Similarity=0.229 Sum_probs=100.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... ..+.+.+++.+|+..++...++.+.+....
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~ 101 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGT-IIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAP 101 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHH
Confidence 6799999999999999999999999998888887 5666543321 244667999999887777677777654421
Q ss_pred HHHhcC-----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 130 TLIRSG-----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 130 ~~~~~~-----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
...... -...+-++...... ...+++ |++|+...+|+++.. +.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l 178 (213)
T cd03262 102 IKVKGMSKAEAEERALELLEKVGLADKADAY-PAQLSG--GQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVM 178 (213)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC-ccccCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 100000 00011111111111 133444 788888888877653 55666
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
..+++.+.|||+++|.... +..+||.++.|+++
T Consensus 179 ~~~~~~~~tvi~~sh~~~~------------------~~~~~d~i~~l~~g 211 (213)
T cd03262 179 KDLAEEGMTMVVVTHEMGF------------------AREVADRVIFMDDG 211 (213)
T ss_pred HHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEeCC
Confidence 5555668999999997664 45578888888754
No 132
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=1.5e-13 Score=123.77 Aligned_cols=155 Identities=20% Similarity=0.260 Sum_probs=101.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHH-H
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL-I 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~-~ 132 (366)
+.+|++++|.||||||||||++.+++...+..|. ++++++.... ....+.+++.+|+..++...++.+.+...... .
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~-i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 99 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGR-VLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL 99 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc
Confidence 7799999999999999999999999998887787 5666654322 12346789999988777667777765432110 0
Q ss_pred ------hc---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-
Q 017792 133 ------RS---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS- 182 (366)
Q Consensus 133 ------~~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~- 182 (366)
.. .-...+-++...... ...+++ |++|+...+|+++.. +.++...+.
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 176 (211)
T cd03298 100 KLTAEDRQAIEVALARVGLAGLEKRL-PGELSG--GERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA 176 (211)
T ss_pred CccHHHHHHHHHHHHHcCCHHHHhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 00 000111111111111 133444 788888888877653 555555544
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+.++|||+++|..+. +..+||+++.|.++.+
T Consensus 177 ~~~~tii~~sH~~~~------------------~~~~~d~i~~l~~G~i 207 (211)
T cd03298 177 ETKMTVLMVTHQPED------------------AKRLAQRVVFLDNGRI 207 (211)
T ss_pred hcCCEEEEEecCHHH------------------HHhhhCEEEEEECCEE
Confidence 358999999997765 5567899999887654
No 133
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.46 E-value=1.9e-13 Score=120.33 Aligned_cols=140 Identities=16% Similarity=0.123 Sum_probs=94.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcc---eecCCCCHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENL---LLAQPDCGEQALS 126 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~---~~~~~~~~e~~l~ 126 (366)
-+++|++++|+|+||||||||++.+++...+..|. ++++++.... ..+.+.+++.+|+. .+....++.+.+.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~ 100 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGE-ITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIA 100 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHH
Confidence 37799999999999999999999999998888887 5666654322 23456789999874 3555567776654
Q ss_pred HHHH------------HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecC
Q 017792 127 LVDT------------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 194 (366)
Q Consensus 127 ~~~~------------~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~ 194 (366)
.... ..-..+++++++|...+-... ...+.+.+.++.+ .+.+.|+|+++|.
T Consensus 101 ~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~-------------~~~~~l~~~l~~~----~~~~~tiii~sh~ 163 (182)
T cd03215 101 LSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDV-------------GAKAEIYRLIREL----ADAGKAVLLISSE 163 (182)
T ss_pred HHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCH-------------HHHHHHHHHHHHH----HHCCCEEEEEeCC
Confidence 3210 011246789999988766520 1122333444443 3458999999997
Q ss_pred CcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 195 RAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 195 ~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
... +..+||.++.|+++
T Consensus 164 ~~~------------------~~~~~d~v~~l~~G 180 (182)
T cd03215 164 LDE------------------LLGLCDRILVMYEG 180 (182)
T ss_pred HHH------------------HHHhCCEEEEecCC
Confidence 654 55578888888754
No 134
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=6.6e-14 Score=128.52 Aligned_cols=158 Identities=20% Similarity=0.263 Sum_probs=101.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... ....+.+++.+|+..++...++.+.+........
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 103 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT-ILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKP 103 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhcc
Confidence 6799999999999999999999999988887787 5666543221 1123568999998877777788776654221100
Q ss_pred c----C----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 134 S----G----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 134 ~----~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
. . -...+-++....-. ...+++ |++|+...||+++.. +.++..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 180 (239)
T cd03296 104 RSERPPEAEIRAKVHELLKLVQLDWLADRY-PAQLSG--GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLR 180 (239)
T ss_pred ccccCCHHHHHHHHHHHHHHcCChhhhhcC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 0 0 00000111111111 123444 888888888887654 555555
Q ss_pred Hhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 180 SLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 180 ~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
.+++ .++|||+++|..+. +..+||+++.|.++.+...
T Consensus 181 ~~~~~~~~tvii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 218 (239)
T cd03296 181 RLHDELHVTTVFVTHDQEE------------------ALEVADRVVVMNKGRIEQV 218 (239)
T ss_pred HHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCeEEEe
Confidence 5544 48999999997654 4567899999987654433
No 135
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.46 E-value=8.7e-14 Score=135.00 Aligned_cols=159 Identities=17% Similarity=0.236 Sum_probs=105.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... ..+.+.+++.+|+..++...++.+.+.+
T Consensus 20 i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~-I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 98 (354)
T TIGR02142 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGE-IVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRY 98 (354)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHH
Confidence 6799999999999999999999999998887787 5566554321 1345679999999888877888877654
Q ss_pred HHHHHhcC--------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 128 VDTLIRSG--------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 128 ~~~~~~~~--------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
........ -...+-++...... ...+++ |++|+...||+++.. +..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSg--GqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~ 175 (354)
T TIGR02142 99 GMKRARPSERRISFERVIELLGIGHLLGRL-PGRLSG--GEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLE 175 (354)
T ss_pred HhhccChhHHHHHHHHHHHHcCChhHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHH
Confidence 22110000 00111112111111 234554 888888888887753 455555
Q ss_pred Hhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 180 SLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 180 ~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.+.+ .++|||+++|..+. +..+||+++.|.++.+...+
T Consensus 176 ~l~~~~g~tiiivtH~~~~------------------~~~~~d~i~~l~~G~i~~~g 214 (354)
T TIGR02142 176 RLHAEFGIPILYVSHSLQE------------------VLRLADRVVVLEDGRVAAAG 214 (354)
T ss_pred HHHHhcCCEEEEEecCHHH------------------HHHhCCEEEEEeCCEEEEEC
Confidence 5444 48999999997765 44567888888777655443
No 136
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=1.1e-13 Score=131.49 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=102.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC--------------------------CC-HHHHhhcc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--------------------------LD-PSLAETIG 107 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~--------------------------~~-~~~~~~ig 107 (366)
+.+|++++|+|+||||||||++.+++.+.+..|. +++++... .. ..+.+.+|
T Consensus 30 i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 108 (305)
T PRK13651 30 INQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGT-IEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVG 108 (305)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE-EEEeceecccccccccccccccccccccccccccchHHHHHhceE
Confidence 6799999999999999999999999998888887 45543321 01 24567799
Q ss_pred cccCcc--eecCCCCHHHHHHHHHHHHh----------cCCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-
Q 017792 108 VKTENL--LLAQPDCGEQALSLVDTLIR----------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA- 173 (366)
Q Consensus 108 ~~~~~~--~~~~~~~~e~~l~~~~~~~~----------~~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~- 173 (366)
|.+|++ .++ ..++.+.+.+...... ..-...+-++ ....-. ...+++ |++|+...|++++..
T Consensus 109 ~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LSg--GqkqrvalA~aL~~~P 184 (305)
T PRK13651 109 VVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRS-PFELSG--GQKRRVALAGILAMEP 184 (305)
T ss_pred EEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC-hhhCCH--HHHHHHHHHHHHHhCC
Confidence 999975 233 3467666543211100 0001111111 111111 234444 888888888887764
Q ss_pred -------------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 -------------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 -------------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+++.|+|||+++|..+. +..+||+++.|+++.++..
T Consensus 185 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~------------------~~~~adrv~vl~~G~i~~~ 246 (305)
T PRK13651 185 DFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDN------------------VLEWTKRTIFFKDGKIIKD 246 (305)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 556666666679999999997764 5567999999988765544
Q ss_pred C
Q 017792 235 G 235 (366)
Q Consensus 235 ~ 235 (366)
+
T Consensus 247 g 247 (305)
T PRK13651 247 G 247 (305)
T ss_pred C
Confidence 3
No 137
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=2.3e-13 Score=125.06 Aligned_cols=158 Identities=17% Similarity=0.197 Sum_probs=103.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++.... ..+.+.+++.+|+..++...++.+.+.....
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 104 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGN-IIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQ 104 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhh
Confidence 6799999999999999999999999998888886 5666654322 1234568999998877776777766543211
Q ss_pred HHhcCC-----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 131 LIRSGS-----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 131 ~~~~~~-----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
...... ...+-++..... +...+++ |++|+...||++... +.++..
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 181 (241)
T PRK10895 105 IRDDLSAEQREDRANELMEEFHIEHLRDS-MGQSLSG--GERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIE 181 (241)
T ss_pred cccccCHHHHHHHHHHHHHHcCCHHHhhc-chhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 100000 000001111111 1233444 788888888877543 556666
Q ss_pred HhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 180 SLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 180 ~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
.+++.+.|||+++|.... +..+||+++.|.++.+...
T Consensus 182 ~~~~~g~tiii~sH~~~~------------------~~~~~d~v~~l~~G~i~~~ 218 (241)
T PRK10895 182 HLRDSGLGVLITDHNVRE------------------TLAVCERAYIVSQGHLIAH 218 (241)
T ss_pred HHHhcCCEEEEEEcCHHH------------------HHHhcCEEEEEeCCeEEee
Confidence 666679999999997654 5567899999987765443
No 138
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.46 E-value=1e-13 Score=125.04 Aligned_cols=157 Identities=16% Similarity=0.191 Sum_probs=102.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHH-HH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDT-LI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~-~~ 132 (366)
+.+|++++|.||||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++...++.+.+..... ..
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~ 99 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGS-IKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL 99 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC
Confidence 6799999999999999999999999998888887 5666654322 2345679999999887777777766543210 00
Q ss_pred h------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh
Q 017792 133 R------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL 183 (366)
Q Consensus 133 ~------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~ 183 (366)
. . .-...+-++...... ...+++ |++|+...+|+++.. +.++...+.+
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 176 (213)
T TIGR01277 100 KLNAEQQEKVVDAAQQVGIADYLDRL-PEQLSG--GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCS 176 (213)
T ss_pred CccHHHHHHHHHHHHHcCcHHHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 0 0 000111111111111 133444 788888888877654 5555555544
Q ss_pred -cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 184 -SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 184 -~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
.++|||+++|.... +..+||.++.|.++++..
T Consensus 177 ~~~~tii~vsh~~~~------------------~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 177 ERQRTLLMVTHHLSD------------------ARAIASQIAVVSQGKIKV 209 (213)
T ss_pred hcCCEEEEEeCCHHH------------------HHhhcCeEEEEECCeEEE
Confidence 48999999997654 456789999988765443
No 139
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.46 E-value=2e-13 Score=127.68 Aligned_cols=158 Identities=20% Similarity=0.209 Sum_probs=102.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H----HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~----~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+|+||||||||++.+++...+..|. +++++..... . .+.+.+++.+|+..++...++.+.+...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~ 108 (269)
T PRK11831 30 VPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGE-ILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYP 108 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHH
Confidence 7799999999999999999999999998887787 5666643321 1 2345689999998777777887776542
Q ss_pred HHHHhcCC-----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 129 DTLIRSGS-----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 129 ~~~~~~~~-----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
........ ...+-+....... ...+++ |++|+...||+++.. +.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 185 (269)
T PRK11831 109 LREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM-PSELSG--GMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKL 185 (269)
T ss_pred HHHccCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 11100000 0111111111111 134444 788888888887654 5555
Q ss_pred HHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 178 SHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 178 ~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
...+.+ .++|||+++|.... +..+||+++.|.++.+...
T Consensus 186 l~~~~~~~g~tiiivsH~~~~------------------~~~~~d~v~~l~~G~i~~~ 225 (269)
T PRK11831 186 ISELNSALGVTCVVVSHDVPE------------------VLSIADHAYIVADKKIVAH 225 (269)
T ss_pred HHHHHHhcCcEEEEEecCHHH------------------HHHhhCEEEEEECCEEEEe
Confidence 555544 48999999997654 5567888888887654433
No 140
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.46 E-value=9.8e-14 Score=125.82 Aligned_cols=159 Identities=20% Similarity=0.217 Sum_probs=102.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-H-HHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S-LAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~-~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
-+++|++++|+||||||||||++.+++...+..|. +++++..... . . ..+.+++.+|+..++...++.+.+....
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~ 100 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGS-IRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGA 100 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHh
Confidence 37799999999999999999999999988888887 5666543321 1 2 2456899999887777777777665432
Q ss_pred HHHhcCCc--eE-EEEecc---cccC--CCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 130 TLIRSGSV--DV-VVVDSV---AALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 130 ~~~~~~~~--~l-vviDsl---~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
........ .. -+++.+ .... +...+++ |++|+...+|++... +.++...+
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 178 (222)
T cd03224 101 YARRRAKRKARLERVYELFPRLKERRKQLAGTLSG--GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL 178 (222)
T ss_pred hhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCH--HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 21100000 00 001111 1111 1123444 788888888877653 55555555
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
.+.++|||+++|..+. +..+||+++.|+++.+..
T Consensus 179 ~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~ 212 (222)
T cd03224 179 RDEGVTILLVEQNARF------------------ALEIADRAYVLERGRVVL 212 (222)
T ss_pred HHCCCEEEEEeCCHHH------------------HHHhccEEEEeeCCeEEE
Confidence 5578999999997654 556789998888765443
No 141
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=1.3e-13 Score=129.26 Aligned_cols=159 Identities=15% Similarity=0.141 Sum_probs=102.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce-ecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~~ 130 (366)
+.+|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+...+|+.+|++. .....++.+.+.+...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~ 106 (274)
T PRK13647 28 IPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGR-VKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPV 106 (274)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceE-EEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHH
Confidence 6799999999999999999999999988887786 5666654322 345567999999862 2233566666543211
Q ss_pred HHh-------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 131 LIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 131 ~~~-------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
... . .-...+-+.....-. ...+++ |++|+...||+++.. +..+...
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LSg--G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 183 (274)
T PRK13647 107 NMGLDKDEVERRVEEALKAVRMWDFRDKP-PYHLSY--GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDR 183 (274)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCHHHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 000 0 000011111111111 134444 788888888887664 5566655
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+++.|+|||+++|..+. +..+||+++.|+++.++..+
T Consensus 184 ~~~~g~tili~tH~~~~------------------~~~~~d~i~~l~~G~i~~~g 220 (274)
T PRK13647 184 LHNQGKTVIVATHDVDL------------------AAEWADQVIVLKEGRVLAEG 220 (274)
T ss_pred HHHCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEC
Confidence 55569999999997764 45679999999887655444
No 142
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.45 E-value=1.4e-13 Score=125.28 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=101.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH-----hhcCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA-----QRQGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~-----~~~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++.. .+..|. ++++++.... ..+.+.+++.+|+..++ ..++.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~ 100 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGE-VLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDN 100 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeE-EEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHH
Confidence 6799999999999999999999999998 777776 5666654221 23456789999988776 6777776
Q ss_pred HHHHHHHHhc-----------CCceEEEEecccccCC-CCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 125 LSLVDTLIRS-----------GSVDVVVVDSVAALVP-KGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 125 l~~~~~~~~~-----------~~~~lvviDsl~~l~~-~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+......... .-...+-++....-.+ ...+++ |++|+...||+++..
T Consensus 101 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 178 (227)
T cd03260 101 VAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSG--GQQQRLCLARALANEPEVLLLDEPTSALDPISTA 178 (227)
T ss_pred HHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 6542211000 0001111111100010 134544 888888888887654
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+. .|||+++|.... +..+||+++.|.++.++..
T Consensus 179 ~l~~~l~~~~~~-~tii~~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 179 KIEELIAELKKE-YTIVIVTHNMQQ------------------AARVADRTAFLLNGRLVEF 221 (227)
T ss_pred HHHHHHHHHhhC-cEEEEEeccHHH------------------HHHhCCEEEEEeCCEEEEe
Confidence 55555555555 899999997654 4567899999987765433
No 143
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=1.8e-13 Score=134.21 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=107.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CH-H----HHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP-S----LAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~-~----~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.... +. . +.+.++|.+|+..++...++.+.+.+
T Consensus 51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~-I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~ 129 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQ-VLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAF 129 (400)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCE-EEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHH
Confidence 6799999999999999999999999998888887 567765432 21 1 23479999999888877888887765
Q ss_pred HHHHHhc----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
....... .-...+-++....-. ..++++ |++|+...||+++.. +..+
T Consensus 130 ~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~-~~~LSg--Gq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~ 206 (400)
T PRK10070 130 GMELAGINAEERREKALDALRQVGLENYAHSY-PDELSG--GMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE 206 (400)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCChhhhcC-cccCCH--HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 3221000 001111122221111 234554 888988888887764 5555
Q ss_pred HHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+. +.++|||+++|..+. +..+||+++.|+++.+...+
T Consensus 207 L~~l~~~~g~TIIivTHd~~~------------------~~~~~Dri~vL~~G~i~~~g 247 (400)
T PRK10070 207 LVKLQAKHQRTIVFISHDLDE------------------AMRIGDRIAIMQNGEVVQVG 247 (400)
T ss_pred HHHHHHHCCCeEEEEECCHHH------------------HHHhCCEEEEEECCEEEecC
Confidence 55544 468999999997765 45578888888887765544
No 144
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.45 E-value=1.1e-13 Score=124.61 Aligned_cols=155 Identities=16% Similarity=0.220 Sum_probs=98.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|.|+||||||||++.+++.+.+.+|. +++++..... ....+.+++.+|+..++...++.+.+........
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 101 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGR-IYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK 101 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcC
Confidence 6799999999999999999999999988888887 5666543322 1123568999998877666677776654211100
Q ss_pred cC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh
Q 017792 134 SG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL 183 (366)
Q Consensus 134 ~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~ 183 (366)
.. -...+-++...... ...+++ |++|+...||++... +..+...+.+
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03301 102 VPKDEIDERVREVAELLQIEHLLDRK-PKQLSG--GQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQ 178 (213)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 00 00111111111111 133444 788888888877653 4455544444
Q ss_pred -cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 184 -SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 184 -~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
.++|||+++|.... +..+||+++.|.++.+
T Consensus 179 ~~~~tvi~~sH~~~~------------------~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 179 RLGTTTIYVTHDQVE------------------AMTMADRIAVMNDGQI 209 (213)
T ss_pred HcCCEEEEEeCCHHH------------------HHHhcCeEEEEECCEE
Confidence 58999999997654 4556788888876643
No 145
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.45 E-value=2.1e-13 Score=123.53 Aligned_cols=157 Identities=15% Similarity=0.098 Sum_probs=101.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... ..+.+.+++.+|+..++...++.+.+.......
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 103 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGT-AYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK 103 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc
Confidence 6799999999999999999999999998888887 5566554322 345567999999887776677777665432110
Q ss_pred hcC------C----ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSG------S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~------~----~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
... . ...+-++...... ...+++ |++|+...+|+++.. +.++...+.
T Consensus 104 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 180 (220)
T cd03263 104 GLPKSEIKEEVELLLRVLGLTDKANKR-ARTLSG--GMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR 180 (220)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHhCh-hhhCCH--HHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 000 0 0001111111111 133443 788888888876653 445454444
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+ +.|||+++|..+. +..+||+++.|..+.+...
T Consensus 181 ~-~~tii~~sH~~~~------------------~~~~~d~i~~l~~g~i~~~ 213 (220)
T cd03263 181 K-GRSIILTTHSMDE------------------AEALCDRIAIMSDGKLRCI 213 (220)
T ss_pred c-CCEEEEEcCCHHH------------------HHHhcCEEEEEECCEEEec
Confidence 4 5899999997654 5567899998887765443
No 146
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.45 E-value=2.8e-13 Score=131.73 Aligned_cols=80 Identities=20% Similarity=0.291 Sum_probs=63.0
Q ss_pred ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC-C-C--HHHHhhcccccCcceecC
Q 017792 42 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-L-D--PSLAETIGVKTENLLLAQ 117 (366)
Q Consensus 42 G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~-~-~--~~~~~~ig~~~~~~~~~~ 117 (366)
|+-.+|.+-- -+++|+|.+|.|+||+|||||+..+.+.+++..|. +++++... + . ...+..+|+++|++.+++
T Consensus 16 ~~~And~V~l--~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~Ge-I~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSL--SVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE-IRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceee--eecCCcEEEEeccCCCCHHHHHHHHhCcccCCcce-EEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 6666666532 58899999999999999999999999999999887 77777643 2 2 345566899999998887
Q ss_pred CCCHHHH
Q 017792 118 PDCGEQA 124 (366)
Q Consensus 118 ~~~~e~~ 124 (366)
..|+.|+
T Consensus 93 ~lTV~EN 99 (501)
T COG3845 93 TLTVAEN 99 (501)
T ss_pred ccchhhh
Confidence 7776554
No 147
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=1.4e-13 Score=129.76 Aligned_cols=158 Identities=19% Similarity=0.190 Sum_probs=104.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HHHHhhcccccCcc--eecCCCCHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENL--LLAQPDCGEQAL 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~~~~~ig~~~~~~--~~~~~~~~e~~l 125 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... ..+...+++.+|+. .++ +.++.+.+
T Consensus 30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l 107 (287)
T PRK13641 30 LEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGT-ITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDV 107 (287)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHH
Confidence 7799999999999999999999999988888886 6777764321 23456789999985 233 45777766
Q ss_pred HHHHHHHhc----------CCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------H
Q 017792 126 SLVDTLIRS----------GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 174 (366)
Q Consensus 126 ~~~~~~~~~----------~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L 174 (366)
.+....... .-...+-++ .+.... ...+++ |++|+...||+++.. +
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LSg--Gq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l 184 (287)
T PRK13641 108 EFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKS-PFELSG--GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEM 184 (287)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 532211000 000111111 111111 234444 888888888887654 6
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.++...+++.|.|||+++|..+. +..+||+++.|+++.++..+
T Consensus 185 ~~~l~~l~~~g~tvlivsH~~~~------------------~~~~~d~v~~l~~G~i~~~g 227 (287)
T PRK13641 185 MQLFKDYQKAGHTVILVTHNMDD------------------VAEYADDVLVLEHGKLIKHA 227 (287)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 66666666669999999997764 56679999999887655444
No 148
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=1.7e-13 Score=129.30 Aligned_cols=159 Identities=17% Similarity=0.190 Sum_probs=104.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC-------CHHHHhhcccccCcc--eecCCCCHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------DPSLAETIGVKTENL--LLAQPDCGEQA 124 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~-------~~~~~~~ig~~~~~~--~~~~~~~~e~~ 124 (366)
=|++|++++|+|+||||||||++.+++.+.+..|. +++++.... ...+.+.+|+.+|+. .++. .++.+.
T Consensus 28 ~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~ 105 (288)
T PRK13643 28 EVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGK-VTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKD 105 (288)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE-EEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHH
Confidence 37799999999999999999999999998888886 677765432 124567899999986 3443 466666
Q ss_pred HHHHHHHHhc----------CCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 125 LSLVDTLIRS----------GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 125 l~~~~~~~~~----------~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+.+....... .-...+-++ .+.... ...+++ |++|+...|++++..
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-~~~LSg--GqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~ 182 (288)
T PRK13643 106 VAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKS-PFELSG--GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIE 182 (288)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCC-cccCCH--HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHH
Confidence 5443211000 000111111 111111 233444 888888888887764
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+...+++.+.|||+++|..+. +..+||+++.|.++.++..+
T Consensus 183 l~~~l~~l~~~g~til~vtHd~~~------------------~~~~~dri~~l~~G~i~~~g 226 (288)
T PRK13643 183 MMQLFESIHQSGQTVVLVTHLMDD------------------VADYADYVYLLEKGHIISCG 226 (288)
T ss_pred HHHHHHHHHHCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEEC
Confidence 555555555669999999997754 45578999999887655443
No 149
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.44 E-value=2e-13 Score=125.97 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=113.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
++.|+|.+|.|-+|||||||.+++.+++.+..|. +++++++... ..+.+++++++|++-+.+..|+.++..+
T Consensus 51 v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~-ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~f 129 (386)
T COG4175 51 VEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGE-ILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAF 129 (386)
T ss_pred ecCCeEEEEEecCCCCHHHHHHHHhccCCCCCce-EEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhc
Confidence 7799999999999999999999999999998887 6777776543 2457789999999999988888776544
Q ss_pred HHHH----------HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH------------------------
Q 017792 128 VDTL----------IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------------ 173 (366)
Q Consensus 128 ~~~~----------~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------------ 173 (366)
-.+. .......++-++....-+| .+++| |.+|+...||+++..
T Consensus 130 GLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp-~eLSG--GMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQde 206 (386)
T COG4175 130 GLEVQGVPKAEREERALEALELVGLEGYADKYP-NELSG--GMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDE 206 (386)
T ss_pred ceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-ccccc--hHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHH
Confidence 1110 0011234555666666664 67877 899999999998764
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
|..|. ++.+.|||||+|..++ .-.+-|++-.|+.++++..|+
T Consensus 207 Ll~Lq---~~l~KTIvFitHDLdE------------------AlriG~rIaimkdG~ivQ~Gt 248 (386)
T COG4175 207 LLELQ---AKLKKTIVFITHDLDE------------------ALRIGDRIAIMKDGEIVQVGT 248 (386)
T ss_pred HHHHH---HHhCCeEEEEecCHHH------------------HHhccceEEEecCCeEEEeCC
Confidence 44444 4568999999998876 222345666666666666554
No 150
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.44 E-value=1.9e-13 Score=123.03 Aligned_cols=153 Identities=19% Similarity=0.199 Sum_probs=97.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce-ecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... ..+.+.+++.+|+.. .....++.+.+.....
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~ 102 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE-VLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLE 102 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHH
Confidence 6799999999999999999999999988887887 5566543221 345677999999863 2345577666543211
Q ss_pred HHh-------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 131 LIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 131 ~~~-------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
... . .-...+-++....-. ...+++ |++|+...+|+++.. +..+...
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 179 (211)
T cd03225 103 NLGLPEEEIEERVEEALELVGLEGLRDRS-PFTLSG--GQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK 179 (211)
T ss_pred HcCCCHHHHHHHHHHHHHHcCcHhhhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 000 0 000011111111111 234444 888888888887654 5555555
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
+.+.++|||+++|..+. +..+||+++.|.++
T Consensus 180 ~~~~~~tvi~~sH~~~~------------------~~~~~d~i~~l~~G 210 (211)
T cd03225 180 LKAEGKTIIIVTHDLDL------------------LLELADRVIVLEDG 210 (211)
T ss_pred HHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEeCC
Confidence 55568999999997654 45568888887653
No 151
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.44 E-value=2.6e-13 Score=123.52 Aligned_cols=156 Identities=18% Similarity=0.154 Sum_probs=100.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcc--eecCCCCHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENL--LLAQPDCGEQAL 125 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~--~~~~~~~~e~~l 125 (366)
-+++|++++|+||||||||||++.+++.+.+..|. ++++++.... ..+.+.+++.+|+. .+....++.+.+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl 105 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS-IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQI 105 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHH
Confidence 37799999999999999999999999988888887 5666654322 23456799999987 345566777765
Q ss_pred HHHHHHHhcC----C--------ceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 126 SLVDTLIRSG----S--------VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 126 ~~~~~~~~~~----~--------~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
.......... . ...+-++ ...... ...+++ |++|+...||++...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~--G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 182 (228)
T cd03257 106 AEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRY-PHELSG--GQRQRVAIARALALNPKLLIADEPTSALDVSVQA 182 (228)
T ss_pred HHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCC-chhcCH--HHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHH
Confidence 4321111000 0 0000010 111111 133443 888888888887654
Q ss_pred -HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 174 -LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 174 -L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+..+...+.+ .+.|||+++|..+. +..+||+++.|.++.+
T Consensus 183 ~l~~~l~~~~~~~~~tii~~sH~~~~------------------~~~~~d~i~~l~~G~i 224 (228)
T cd03257 183 QILDLLKKLQEELGLTLLFITHDLGV------------------VAKIADRVAVMYAGKI 224 (228)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHH------------------HHHhcCeEEEEeCCEE
Confidence 5555555444 38999999997654 5567899988887653
No 152
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=1.3e-13 Score=125.00 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=99.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR- 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~- 133 (366)
+++|++++|+||||||||||++.+++...+..|. +++++.... .+.+.+++.+|+..++...++.+.+........
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 103 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE-VLVDGEPVT--GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGV 103 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECc--cccCcEEEEecccccccCCCHHHHHHHHHHHcCC
Confidence 7799999999999999999999999988777776 566654332 234568999998877766787776654321100
Q ss_pred ------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-hh
Q 017792 134 ------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-SL 183 (366)
Q Consensus 134 ------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~~ 183 (366)
. .-...+-++...... ...+++ |++|+...||+++.. +..+...+ ++
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~ 180 (220)
T cd03293 104 PKAEARERAEELLELVGLSGFENAY-PHQLSG--GMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180 (220)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 000011111111111 134444 888888888887664 55555544 34
Q ss_pred cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE--Eece
Q 017792 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK--RIGL 231 (366)
Q Consensus 184 ~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~--~~~~ 231 (366)
.+.|||+++|..+. +..+||+++.|. ++.+
T Consensus 181 ~~~tiii~sH~~~~------------------~~~~~d~i~~l~~~~G~i 212 (220)
T cd03293 181 TGKTVLLVTHDIDE------------------AVFLADRVVVLSARPGRI 212 (220)
T ss_pred cCCEEEEEecCHHH------------------HHHhCCEEEEEECCCCEE
Confidence 58999999997764 455788888887 4543
No 153
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=4.3e-13 Score=126.56 Aligned_cols=160 Identities=16% Similarity=0.208 Sum_probs=103.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-----HHHHhhcccccCcce-ecCCCCHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-----PSLAETIGVKTENLL-LAQPDCGEQALSL 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~-~~~~~~~e~~l~~ 127 (366)
-+++|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+...+||.+|++. ...+.++.+.+.+
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~ 107 (287)
T PRK13637 29 EIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGK-IIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAF 107 (287)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccE-EEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHh
Confidence 37799999999999999999999999998888886 6667654322 245678999999863 1223566665543
Q ss_pred HHHHHh----------cCCceEEEEe--cccccCCCCccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 128 VDTLIR----------SGSVDVVVVD--SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 128 ~~~~~~----------~~~~~lvviD--sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
...... ..-...+-++ ....-. ...+++ |++|+...||+++.. +.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-~~~LSg--Gq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~ 184 (287)
T PRK13637 108 GPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKS-PFELSG--GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEIL 184 (287)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH
Confidence 211000 0000111111 111111 233444 888888888887754 55
Q ss_pred HHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 176 KLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 176 ~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.+...+.+ .+.|||+++|..+. +..+||+++.|.++.+...+
T Consensus 185 ~~l~~l~~~~g~tvi~vtHd~~~------------------~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 185 NKIKELHKEYNMTIILVSHSMED------------------VAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEC
Confidence 66655544 48999999997754 45679999999887655443
No 154
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=1.7e-13 Score=125.69 Aligned_cols=160 Identities=15% Similarity=0.222 Sum_probs=103.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H--HHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P--SLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~--~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
-+.+|++++|+|+||||||||++.+++...+.+|. +++++..... . .+.+.+++.+|+..++...++.+.+....
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 105 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGR-IVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGG 105 (237)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCce-EEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhh
Confidence 36799999999999999999999999988888887 5566654322 1 23556899999887776667776654321
Q ss_pred HHHhcCC--------ceEE-EEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 130 TLIRSGS--------VDVV-VVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 130 ~~~~~~~--------~~lv-viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
....... ...+ -++....- +...+++ |++|+...||+++.. +.++...
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~~~~LS~--G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 182 (237)
T PRK11614 106 FFAERDQFQERIKWVYELFPRLHERRIQ-RAGTMSG--GEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ 182 (237)
T ss_pred hccChhHHHHHHHHHHHHHHHHHHHHhC-chhhCCH--HHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 1000000 0000 01111000 1233443 788888888877653 5555555
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+.+.|||+++|..+. +..+||+++.|+++++...+
T Consensus 183 ~~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~~ 219 (237)
T PRK11614 183 LREQGMTIFLVEQNANQ------------------ALKLADRGYVLENGHVVLED 219 (237)
T ss_pred HHHCCCEEEEEeCcHHH------------------HHhhCCEEEEEeCCEEEeeC
Confidence 55669999999997654 55678999999877654443
No 155
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.44 E-value=2.7e-13 Score=125.94 Aligned_cols=158 Identities=23% Similarity=0.264 Sum_probs=103.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++.... ..+.+.+++.+|+..+....++.+.+......
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 103 (258)
T PRK13548 25 LRPGEVVAILGPNGAGKSTLLRALSGELSPDSGE-VRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAP 103 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE-EEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcc
Confidence 6799999999999999999999999988887887 5566543221 23456789999987766666777765432110
Q ss_pred Hh----------cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHH------H--------------------HH
Q 017792 132 IR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ------A--------------------LR 175 (366)
Q Consensus 132 ~~----------~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~------~--------------------L~ 175 (366)
.. ..-...+-++...... ...+++ |++|+...+|+++. . +.
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--Ge~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~ 180 (258)
T PRK13548 104 HGLSRAEDDALVAAALAQVDLAHLAGRD-YPQLSG--GEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVL 180 (258)
T ss_pred cCCCcHHHHHHHHHHHHHcCCHhHhcCC-cccCCH--HHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHH
Confidence 00 0000111111111111 234444 88999999999883 2 55
Q ss_pred HHHHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 176 KLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 176 ~L~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
.+...+. +.+.|||+++|.... +..+||+++.|.++.++..
T Consensus 181 ~~l~~~~~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 181 RLARQLAHERGLAVIVVLHDLNL------------------AARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHHHhcCCEEEEEECCHHH------------------HHHhcCEEEEEECCEEEee
Confidence 5555554 568999999997654 5567899999987765433
No 156
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=4.6e-13 Score=123.14 Aligned_cols=157 Identities=24% Similarity=0.278 Sum_probs=102.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
+++|++++|+||||||||||++.+++...+.+|. +++++..... ..+...+++.+|+..++...++.+.+.....+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 102 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGE-IFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKL 102 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHH
Confidence 7799999999999999999999999988887787 5666654322 23456789999998777777887776543221
Q ss_pred HhcC----------CceEEEEec--ccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 132 IRSG----------SVDVVVVDS--VAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 132 ~~~~----------~~~lvviDs--l~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
.... -...+-+.. ...-. ...+++ |++|+...||++... +.++..
T Consensus 103 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~ 179 (242)
T cd03295 103 LKWPKEKIRERADELLALVGLDPAEFADRY-PHELSG--GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179 (242)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCcHHHHhcC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 1000 001111110 11111 123443 788888888887654 445555
Q ss_pred Hhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 180 SLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 180 ~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
.+++ .+++||+++|.... +..+||+++.|.++.++.
T Consensus 180 ~~~~~~g~tvii~sH~~~~------------------~~~~~d~i~~l~~G~i~~ 216 (242)
T cd03295 180 RLQQELGKTIVFVTHDIDE------------------AFRLADRIAIMKNGEIVQ 216 (242)
T ss_pred HHHHHcCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 5444 48999999997654 456789999988765443
No 157
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.43 E-value=2e-13 Score=126.72 Aligned_cols=150 Identities=16% Similarity=0.133 Sum_probs=100.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV------ 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~------ 128 (366)
+++|++++|+||||||||||++.+++...+..|.+ ++++... ..+.+.+++.+|+..++...++.+.+...
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i-~~~g~~~--~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~ 111 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTAPL--AEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWR 111 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEH--HHhhCceEEEecCccCCCCCcHHHHHHhcccchHH
Confidence 67999999999999999999999999988888875 5555322 23456789999988776666777765431
Q ss_pred ---HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-hhc
Q 017792 129 ---DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-SLS 184 (366)
Q Consensus 129 ---~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~~~ 184 (366)
..++.... ++....-. ...+++ |++|+...+|+++.. +..+...+ ++.
T Consensus 112 ~~~~~~l~~~g-----l~~~~~~~-~~~LSg--Gqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~ 183 (257)
T PRK11247 112 DAALQALAAVG-----LADRANEW-PAALSG--GQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH 183 (257)
T ss_pred HHHHHHHHHcC-----ChhHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 11111111 11111111 134444 788888888877654 44444444 346
Q ss_pred CcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 185 QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 185 ~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
++|||+++|.... +..+||+++.|.++.++.
T Consensus 184 ~~tviivsHd~~~------------------~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 184 GFTVLLVTHDVSE------------------AVAMADRVLLIEEGKIGL 214 (257)
T ss_pred CCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEe
Confidence 8999999997764 456789999988765443
No 158
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=4.1e-13 Score=120.84 Aligned_cols=153 Identities=20% Similarity=0.238 Sum_probs=99.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++| +++|+||||||||||++.+++.+.+..|. ++++++.... ..+.+.+++.+|+..++...++.+.+.......
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 100 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGT-IRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK 100 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccE-EEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh
Confidence 6689 99999999999999999999988888887 5566654322 345677899999887777678877665422110
Q ss_pred hcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
... -...+-++...... ...+++ |++|+...||+++.. +.++...++
T Consensus 101 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 177 (211)
T cd03264 101 GIPSKEVKARVDEVLELVNLGDRAKKK-IGSLSG--GMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG 177 (211)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHhCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 000 00111111111111 233444 788888888877654 555555554
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+ +.|||+++|.... +..+||+++.|+++++
T Consensus 178 ~-~~tii~vsH~~~~------------------~~~~~d~i~~l~~g~i 207 (211)
T cd03264 178 E-DRIVILSTHIVED------------------VESLCNQVAVLNKGKL 207 (211)
T ss_pred C-CCEEEEEcCCHHH------------------HHHhCCEEEEEECCEE
Confidence 4 5999999997654 4557888888887653
No 159
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=2.5e-13 Score=124.16 Aligned_cols=158 Identities=16% Similarity=0.202 Sum_probs=100.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHH-H
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL-I 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~-~ 132 (366)
+.+|++++|+|+||||||||++.+++...+.+|. ++++++.... ......+++.+|+..++...++.+.+...... .
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 100 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASGS-LTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL 100 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccccc
Confidence 7799999999999999999999999998888887 5666654322 12245689999887776666776665421100 0
Q ss_pred hcC---------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-
Q 017792 133 RSG---------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS- 182 (366)
Q Consensus 133 ~~~---------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~- 182 (366)
... -...+-++...... ...+++ |++|+...+|+++.. +.++...+.
T Consensus 101 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~ 177 (232)
T PRK10771 101 KLNAAQREKLHAIARQMGIEDLLARL-PGQLSG--GQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQ 177 (232)
T ss_pred CCCHHHHHHHHHHHHHcCcHHHHhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 000 00111111111111 133444 778888888776654 445444443
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++|||+++|.... +..+||+++.|.++.+...
T Consensus 178 ~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~g~i~~~ 211 (232)
T PRK10771 178 ERQLTLLMVSHSLED------------------AARIAPRSLVVADGRIAWD 211 (232)
T ss_pred hcCCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 358999999997764 5567888888887655433
No 160
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=3e-13 Score=127.13 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=102.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce-ecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|++. .+...++.+.+.+...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~ 108 (279)
T PRK13650 30 VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ-IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLE 108 (279)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHH
Confidence 7799999999999999999999999998888886 6677654322 245678999999863 4445577666543211
Q ss_pred HHh-------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 131 LIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 131 ~~~-------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
... . .-.+.+-++...... ...+++ |++|+...||+++.. +..+...
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSg--Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 185 (279)
T PRK13650 109 NKGIPHEEMKERVNEALELVGMQDFKERE-PARLSG--GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKG 185 (279)
T ss_pred hCCCCHHHHHHHHHHHHHHCCCHhHhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 100 0 000111112111111 134444 788888888887654 5555555
Q ss_pred hhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 181 LSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 181 l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+ .|+|||+++|..+. +. +||+++.|.++.+...+
T Consensus 186 l~~~~g~tilivtH~~~~------------------~~-~~dri~~l~~G~i~~~g 222 (279)
T PRK13650 186 IRDDYQMTVISITHDLDE------------------VA-LSDRVLVMKNGQVESTS 222 (279)
T ss_pred HHHhcCCEEEEEecCHHH------------------HH-hCCEEEEEECCEEEEEC
Confidence 544 59999999997654 43 58999999877654443
No 161
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=2.7e-13 Score=126.49 Aligned_cols=158 Identities=20% Similarity=0.252 Sum_probs=101.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDT- 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~- 130 (366)
+.+|++++|+|+||||||||++.+++.+.+..|. ++++++... ...+.+.+++.+|+..++...++.+.+.....
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 112 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGE-ILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYP 112 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCE-EEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCccc
Confidence 6799999999999999999999999988877787 566665321 13445678999988666666677666543110
Q ss_pred HH----------h---cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 131 LI----------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 131 ~~----------~---~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
.. . ..-...+-++...... ...+++ |++|+...||+++.. +..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~ 189 (265)
T PRK10575 113 WHGALGRFGAADREKVEEAISLVGLKPLAHRL-VDSLSG--GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL 189 (265)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 00 0 0000111111111111 123444 788888888877654 5555
Q ss_pred HHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 178 SHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 178 ~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
...+.+ .++|||+++|.... +..+||+++.|.++.+...
T Consensus 190 l~~l~~~~~~tiii~sH~~~~------------------i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 190 VHRLSQERGLTVIAVLHDINM------------------AARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred HHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCeEEEe
Confidence 555544 48999999997654 5567898888887765433
No 162
>PRK10908 cell division protein FtsE; Provisional
Probab=99.43 E-value=4.8e-13 Score=121.37 Aligned_cols=155 Identities=14% Similarity=0.144 Sum_probs=100.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---H---HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~---~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... . .+.+.+++.+|+..++...++.+.+...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 103 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGK-IWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIP 103 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhH
Confidence 6799999999999999999999999988877786 5666543221 1 2456789999988766666776665432
Q ss_pred HHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
....... -...+-+.....-. ...+++ |++|+...+|++... +..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 180 (222)
T PRK10908 104 LIIAGASGDDIRRRVSAALDKVGLLDKAKNF-PIQLSG--GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLF 180 (222)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-chhCCH--HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 1110000 00011111111111 133444 788888888887654 55555
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
..+++.+.|||+++|..+. +..+||+++.|.++.+
T Consensus 181 ~~~~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i 215 (222)
T PRK10908 181 EEFNRVGVTVLMATHDIGL------------------ISRRSYRMLTLSDGHL 215 (222)
T ss_pred HHHHHCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEE
Confidence 5555568999999997664 5567888888887643
No 163
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.42 E-value=4.3e-13 Score=123.31 Aligned_cols=157 Identities=16% Similarity=0.160 Sum_probs=101.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H--HHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P--SLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~--~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+.+|++++|.|+||||||||++.+++...+..|. +++++..... . .....+++.+|+..++...++.+.+.....
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~ 103 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGS-VLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALP 103 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCe-EEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhh
Confidence 6799999999999999999999999988888887 5666653321 1 223468999998877777788776654211
Q ss_pred HHh---------------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 131 LIR---------------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 131 ~~~---------------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
... . .-...+-++...... ...+++ |++|+...+|++...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~ 180 (242)
T TIGR03411 104 RDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-AGLLSH--GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETE 180 (242)
T ss_pred cccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHH
Confidence 000 0 000001111111111 123433 788888888877654
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ +.|||+++|..+. +..+||+++.|.++.+...
T Consensus 181 ~l~~~l~~~~~-~~tii~~sH~~~~------------------~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 181 KTAELLKSLAG-KHSVVVVEHDMEF------------------VRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred HHHHHHHHHhc-CCEEEEEECCHHH------------------HHHhCCEEEEEECCeEEee
Confidence 5555555544 6899999997654 5567899999987765433
No 164
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.42 E-value=4.7e-14 Score=128.01 Aligned_cols=170 Identities=21% Similarity=0.285 Sum_probs=114.7
Q ss_pred ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeE-----EEEeCCCC-CCHHHHhhcccccCccee
Q 017792 42 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYC-----VFIDAEHA-LDPSLAETIGVKTENLLL 115 (366)
Q Consensus 42 G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~v-----l~id~e~~-~~~~~~~~ig~~~~~~~~ 115 (366)
|...||.-+. +|...+++|+|++|||||||.+.+++...++.|.+ +++|.+.. +-+...+++||+||+-.+
T Consensus 11 G~~~l~a~~~---~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARL 87 (352)
T COG4148 11 GNFALDANFT---LPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87 (352)
T ss_pred CceEEEEecc---CCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeecccc
Confidence 4445555554 55547999999999999999999999998876542 23333322 225667899999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCC----ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH------------------
Q 017792 116 AQPDCGEQALSLVDTLIRSGS----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------ 173 (366)
Q Consensus 116 ~~~~~~e~~l~~~~~~~~~~~----~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------ 173 (366)
++..++..++.+-........ +.++-|..+..-+| ..++| |++|+..+.|++...
T Consensus 88 FpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-~~LSG--GEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 88 FPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-GTLSG--GEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred ccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCC-CccCc--chhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 888887776655433221111 22333444444443 44555 889998888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
|--|-+...+.+++|++++|-..+ +..+||.++.|..+++...|
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~E------------------v~RLAd~vV~le~GkV~A~g 211 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDE------------------VLRLADRVVVLENGKVKASG 211 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHH------------------HHhhhheEEEecCCeEEecC
Confidence 222222225679999999997766 77889999999888765544
No 165
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.42 E-value=2.6e-13 Score=130.36 Aligned_cols=159 Identities=19% Similarity=0.135 Sum_probs=105.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H----HHHhhcccccCcc--eecCCCCHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----SLAETIGVKTENL--LLAQPDCGEQALS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~----~~~~~ig~~~~~~--~~~~~~~~e~~l~ 126 (366)
|.+|++++|+|+||||||||++.+++.+.+..|. ++++++.... . .+.+.+++++|+. .+.+..++.+.+.
T Consensus 44 i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~-I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~ 122 (331)
T PRK15079 44 LYEGETLGVVGESGCGKSTFARAIIGLVKATDGE-VAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIA 122 (331)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcE-EEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHH
Confidence 6799999999999999999999999998887787 5667665432 1 2346799999987 3555567766654
Q ss_pred HHHHHH----hcC--------CceEEEE-ecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 127 LVDTLI----RSG--------SVDVVVV-DSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 127 ~~~~~~----~~~--------~~~lvvi-Dsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
...... ... -...+-+ +.+.... ..++++ |++|+...||+++..
T Consensus 123 ~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-p~~LSg--G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~ 199 (331)
T PRK15079 123 EPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRY-PHEFSG--GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQ 199 (331)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 321110 000 0111111 1121222 245555 889999999888764
Q ss_pred HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.++...+++ .+.|||+++|.... +..+||+++.|..+.++..+
T Consensus 200 i~~lL~~l~~~~~~til~iTHdl~~------------------~~~~~dri~vl~~G~ive~g 244 (331)
T PRK15079 200 VVNLLQQLQREMGLSLIFIAHDLAV------------------VKHISDRVLVMYLGHAVELG 244 (331)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEc
Confidence 5555555544 59999999997764 55678999999887766554
No 166
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.42 E-value=4.1e-13 Score=124.57 Aligned_cols=158 Identities=17% Similarity=0.178 Sum_probs=101.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDT- 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~- 130 (366)
+.+|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.++|.+|++.+....++.+.+.....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 102 (256)
T TIGR03873 24 APPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGT-VDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIP 102 (256)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCE-EEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchh
Confidence 6799999999999999999999999988887887 5666653322 2445578999998765566677776543210
Q ss_pred ---HHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 131 ---LIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 131 ---~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
..... -...+-+..+.... ...+++ |++++...+|+++.. +..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 179 (256)
T TIGR03873 103 HRSLWAGDSPHDAAVVDRALARTELSHLADRD-MSTLSG--GERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLAL 179 (256)
T ss_pred hhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH
Confidence 00000 00001011111111 123443 788888888877653 5566
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
...+++.+.|||+++|.... +..+||+++.|+++.++..
T Consensus 180 l~~~~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 218 (256)
T TIGR03873 180 VRELAATGVTVVAALHDLNL------------------AASYCDHVVVLDGGRVVAA 218 (256)
T ss_pred HHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEeCCCEEEe
Confidence 65655568999999997764 5567899999987765443
No 167
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.42 E-value=2.2e-13 Score=123.73 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=99.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+.+|++++|+|+||||||||++.+++.+.+..|. +++++...... ..+.+++.+++..++...++.+.+.........
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~~~~~~~~-~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~ 100 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGE-IIFDGHPWTRK-DLHKIGSLIESPPLYENLTARENLKVHTTLLGL 100 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEecccc-ccccEEEEcCCCCccccCCHHHHHHHHHHHcCC
Confidence 6799999999999999999999999988888787 55665432221 124688888887776667777766443221100
Q ss_pred CC------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcCcEE
Q 017792 135 GS------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQTIL 188 (366)
Q Consensus 135 ~~------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~~tV 188 (366)
.. .+.+-++...... ...+++ |++++...+|+++.. +.++...+++.+.+|
T Consensus 101 ~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~ti 177 (223)
T TIGR03740 101 PDSRIDEVLNIVDLTNTGKKK-AKQFSL--GMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITV 177 (223)
T ss_pred CHHHHHHHHHHcCCcHHHhhh-HhhCCH--HHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 00 0111111111111 123333 777777777776653 555555555568999
Q ss_pred EEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 189 IFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 189 I~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
|+++|.... +..+||+++.|.++.+..
T Consensus 178 ii~sH~~~~------------------~~~~~d~i~~l~~g~i~~ 204 (223)
T TIGR03740 178 ILSSHILSE------------------VQQLADHIGIISEGVLGY 204 (223)
T ss_pred EEEcCCHHH------------------HHHhcCEEEEEeCCEEEE
Confidence 999997654 556789988888765443
No 168
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=6.8e-13 Score=127.28 Aligned_cols=155 Identities=19% Similarity=0.205 Sum_probs=103.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcce--ecCCCCHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLL--LAQPDCGEQALS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~--~~~~~~~e~~l~ 126 (366)
|++|++++|+|+||||||||++.+++...+..|. ++++++.... ..+.+++++.+|+.. +.+..++.+.+.
T Consensus 38 i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~-i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~ 116 (327)
T PRK11308 38 LERGKTLAVVGESGCGKSTLARLLTMIETPTGGE-LYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILE 116 (327)
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcE-EEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHH
Confidence 6799999999999999999999999988877776 5566654322 124557999999863 444456655443
Q ss_pred H----------------HHHHHhcCCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 127 L----------------VDTLIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 127 ~----------------~~~~~~~~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
. +..++.. +-++ ...... ..++++ |++|+...||+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~-----~gL~~~~~~~~-p~~LSg--Gq~QRv~iArAL~~~P~lLilDEPts~LD~~ 188 (327)
T PRK11308 117 EPLLINTSLSAAERREKALAMMAK-----VGLRPEHYDRY-PHMFSG--GQRQRIAIARALMLDPDVVVADEPVSALDVS 188 (327)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHH-----CCCChHHhcCC-CccCCH--HHHHHHHHHHHHHcCCCEEEEECCCccCCHH
Confidence 2 1111111 1111 111222 245655 889999999988764
Q ss_pred ----HHHHHHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 ----LRKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 ----L~~L~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++...++ +.|+|||+|+|.... +..+||+++.|..++++..+.
T Consensus 189 ~~~~i~~lL~~l~~~~g~til~iTHdl~~------------------~~~~adrv~vm~~G~ive~g~ 238 (327)
T PRK11308 189 VQAQVLNLMMDLQQELGLSYVFISHDLSV------------------VEHIADEVMVMYLGRCVEKGT 238 (327)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEECC
Confidence 444444444 469999999997654 556789999998887766543
No 169
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.42 E-value=2.5e-13 Score=123.93 Aligned_cols=159 Identities=18% Similarity=0.229 Sum_probs=102.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H--HHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P--SLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~--~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+|+||||||||++.+++.+.+..|. ++++++.... . .+.+.+++.+|+..++...++.+.+.....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 101 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGS-IRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLA 101 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE-EEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHH
Confidence 7799999999999999999999999998888887 5566544321 1 234568999998877776788777654322
Q ss_pred HHhcCCceE--EEEec---ccccC--CCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh
Q 017792 131 LIRSGSVDV--VVVDS---VAALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL 183 (366)
Q Consensus 131 ~~~~~~~~l--vviDs---l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~ 183 (366)
......... -+++. +.... +...+++ |++|+...+|+++.. +.++...+++
T Consensus 102 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~--G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 179 (230)
T TIGR03410 102 ALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSG--GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179 (230)
T ss_pred hcCcchHHHHHHHHHHHHhHHHHhhCChhhCCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 110000000 00000 11111 1123433 778888888877653 5555555554
Q ss_pred -cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 184 -SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 184 -~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
.++|||+++|..+. +..+||.++.+.++.++..
T Consensus 180 ~~~~tii~~sH~~~~------------------~~~~~d~v~~l~~g~i~~~ 213 (230)
T TIGR03410 180 EGGMAILLVEQYLDF------------------ARELADRYYVMERGRVVAS 213 (230)
T ss_pred cCCcEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 48999999997764 5567899999987765443
No 170
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.42 E-value=4.5e-14 Score=122.44 Aligned_cols=162 Identities=16% Similarity=0.197 Sum_probs=118.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HH--H-HhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PS--L-AETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~--~-~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+.+|++++|.||||+||||...++++.+.++.|. ++++..+... +. + ..-+||.+|...++...|+++++..+.+
T Consensus 27 v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~-i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE 105 (243)
T COG1137 27 VNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK-ILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE 105 (243)
T ss_pred EcCCcEEEEECCCCCCceeEEEEEEEEEecCCce-EEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHh
Confidence 7799999999999999999999999999999887 6677665543 22 2 2347899999999999999998776554
Q ss_pred HHhcCC---ceEEEEeccc------ccC--CCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 131 LIRSGS---VDVVVVDSVA------ALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 131 ~~~~~~---~~lvviDsl~------~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
...... .+-.-+|.+. .+. +...+++ |++.+..+||+++.. ++++.+
T Consensus 106 ~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSG--GERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~ 183 (243)
T COG1137 106 IREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSG--GERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK 183 (243)
T ss_pred hhhcchhHHHHHHHHHHHHHHhchHHHhcCccccccc--chHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHH
Confidence 332110 0000112221 111 1234444 899999999998764 899999
Q ss_pred HhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 180 SLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 180 ~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
.|+..|+-|+++.|..++ .-.+||+...+..++++.+|++
T Consensus 184 ~L~~rgiGvLITDHNVRE------------------tL~i~dRaYIi~~G~vla~G~p 223 (243)
T COG1137 184 HLKDRGIGVLITDHNVRE------------------TLDICDRAYIISDGKVLAEGSP 223 (243)
T ss_pred HHHhCCceEEEccccHHH------------------HHhhhheEEEEecCeEEecCCH
Confidence 999999999999997665 2346888888988888888764
No 171
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.42 E-value=3.7e-13 Score=125.52 Aligned_cols=159 Identities=21% Similarity=0.270 Sum_probs=102.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHHH-H
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVD-T 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-~ 130 (366)
+.+|++++|+|+||||||||++.+++.+.+..|. ++++++... ...+...++|.+|+..++...++.+.+.... .
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~ 108 (265)
T PRK10253 30 IPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGH-VWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYP 108 (265)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcE-EEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCccc
Confidence 6799999999999999999999999988887786 556665322 1344567899999887766667766654310 0
Q ss_pred H---H-------h---cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 131 L---I-------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 131 ~---~-------~---~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
. . . ..-...+-++....-. ...+++ |++|+...||+++.. +.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 185 (265)
T PRK10253 109 HQPLFTRWRKEDEEAVTKAMQATGITHLADQS-VDTLSG--GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLEL 185 (265)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-cccCCh--HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 0 0 0 0000011111111111 133444 788888888887654 4455
Q ss_pred HHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+.+ .++|||+++|.... +..+||+++.|.++.++..+
T Consensus 186 L~~l~~~~~~tiii~tH~~~~------------------~~~~~d~i~~l~~G~i~~~g 226 (265)
T PRK10253 186 LSELNREKGYTLAAVLHDLNQ------------------ACRYASHLIALREGKIVAQG 226 (265)
T ss_pred HHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 555544 48999999997764 55678999999877655443
No 172
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=2.9e-13 Score=127.85 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=102.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC----C---HHHHhhcccccCcc--eecCCCCHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D---PSLAETIGVKTENL--LLAQPDCGEQA 124 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~----~---~~~~~~ig~~~~~~--~~~~~~~~e~~ 124 (366)
=|++|++++|+|+||||||||++.+++...+..|. +++++.... . ..+.+.+||.+|++ .++ +.++.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~en 106 (290)
T PRK13634 29 SIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGT-VTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKD 106 (290)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE-EEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHH
Confidence 37799999999999999999999999998888886 566665432 1 24556799999975 333 3466666
Q ss_pred HHHHHHHHh----------cCCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 125 LSLVDTLIR----------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 125 l~~~~~~~~----------~~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+.+...... ..-.+.+-++ .+.... ...+++ |++|+...||+++..
T Consensus 107 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LSg--Gq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~ 183 (290)
T PRK13634 107 ICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARS-PFELSG--GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKE 183 (290)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 543211000 0000111111 111111 234444 888888888887764
Q ss_pred HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+...+.+ .|.|||+++|..+. +..+||+++.|.+++++..+
T Consensus 184 l~~~L~~l~~~~g~tviiitHd~~~------------------~~~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 184 MMEMFYKLHKEKGLTTVLVTHSMED------------------AARYADQIVVMHKGTVFLQG 228 (290)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEC
Confidence 5555555543 59999999997764 55678999999887655444
No 173
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=2.9e-13 Score=125.45 Aligned_cols=157 Identities=18% Similarity=0.254 Sum_probs=101.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHH-H
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVD-T 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-~ 130 (366)
+.+|++++|+|+||||||||++.+++.+.+..|. +++++.... . ..+.+.+++.+|+..+....++.+.+.... .
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~ 103 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFARLLTPQSGT-VFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSP 103 (255)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcE-EEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccch
Confidence 6799999999999999999999999988887787 556654321 1 234556899999877666667766654321 0
Q ss_pred ---HHhc----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 131 ---LIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 131 ---~~~~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
.... .-...+-++...... ...+++ |++|+...||+++.. +..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 180 (255)
T PRK11231 104 WLSLWGRLSAEDNARVNQAMEQTRINHLADRR-LTDLSG--GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRL 180 (255)
T ss_pred hhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 0000 000111111111111 234444 888888888887664 5555
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
...+.+.++|||+++|.... +..+||+++.|.++.+..
T Consensus 181 l~~l~~~~~tiii~tH~~~~------------------~~~~~d~i~~l~~G~i~~ 218 (255)
T PRK11231 181 MRELNTQGKTVVTVLHDLNQ------------------ASRYCDHLVVLANGHVMA 218 (255)
T ss_pred HHHHHHCCCEEEEEECCHHH------------------HHHhcCEEEEEECCeEEE
Confidence 55555568999999997654 556788888888765443
No 174
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=3e-13 Score=122.04 Aligned_cols=154 Identities=19% Similarity=0.261 Sum_probs=99.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++ ++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++...++.+.+..
T Consensus 21 i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 98 (214)
T cd03297 21 LNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGT-IVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAF 98 (214)
T ss_pred Ecc-eeEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHH
Confidence 668 999999999999999999999998888887 4566544321 1345678999998877777777776543
Q ss_pred HHHHH-----hc---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 128 VDTLI-----RS---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 128 ~~~~~-----~~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
..... .. .-...+-++...... ...+++ |++|+...+|+++.. +.++..
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 175 (214)
T cd03297 99 GLKRKRNREDRISVDELLDLLGLDHLLNRY-PAQLSG--GEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELK 175 (214)
T ss_pred HHhhCCHHHHHHHHHHHHHHcCCHhHhhcC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 21100 00 000111111111111 234444 788888888877654 555555
Q ss_pred Hhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 180 SLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 180 ~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
.+.+ .++|||+++|.... +..+||+++.|.++++
T Consensus 176 ~~~~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i 210 (214)
T cd03297 176 QIKKNLNIPVIFVTHDLSE------------------AEYLADRIVVMEDGRL 210 (214)
T ss_pred HHHHHcCcEEEEEecCHHH------------------HHHhcCEEEEEECCEE
Confidence 5444 48999999997764 4557888888887654
No 175
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=4.9e-13 Score=125.01 Aligned_cols=156 Identities=18% Similarity=0.170 Sum_probs=102.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-H----HHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S----LAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~----~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++.+.+..|. ++++++.... . . +.+.+++.+|+..++...++.+.+..
T Consensus 47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~-i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 125 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK-VLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAF 125 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHH
Confidence 6799999999999999999999999998887776 5676654322 1 1 23568999998877777788777654
Q ss_pred HHHHHh-------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~-------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
...... . .-...+-++...... ...+++ |++|+...||+++.. +.++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~ 202 (269)
T cd03294 126 GLEVQGVPRAEREERAAEALELVGLEGWEHKY-PDELSG--GMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDE 202 (269)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 321100 0 000011111111111 134444 888888888887654 5555
Q ss_pred HHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 178 SHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 178 ~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
...+. +.+.|||+++|..+. +..+||.++.|.++.+.
T Consensus 203 l~~~~~~~g~tiii~tH~~~~------------------~~~~~d~v~~l~~G~i~ 240 (269)
T cd03294 203 LLRLQAELQKTIVFITHDLDE------------------ALRLGDRIAIMKDGRLV 240 (269)
T ss_pred HHHHHHhcCCEEEEEeCCHHH------------------HHHhcCEEEEEECCEEE
Confidence 55544 348999999997654 55678999988876543
No 176
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=5.8e-13 Score=122.46 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=103.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC-----C----HHHHhhcccccCcceecCCCCHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-----D----PSLAETIGVKTENLLLAQPDCGEQAL 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~-----~----~~~~~~ig~~~~~~~~~~~~~~e~~l 125 (366)
+.+|++++|.||||||||||++.+++...+..|. ++++++... . ..+.+.+++.+|+..++...++.+.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i 103 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT-LNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNL 103 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHH
Confidence 6799999999999999999999999988877787 566665421 1 23456789999988877777777765
Q ss_pred HHHH-HHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------H
Q 017792 126 SLVD-TLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 174 (366)
Q Consensus 126 ~~~~-~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L 174 (366)
.... ...... -...+-++....-. ...+++ |++|+...+|+++.. +
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l 180 (242)
T PRK11124 104 IEAPCRVLGLSKDQALARAEKLLERLRLKPYADRF-PLHLSG--GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180 (242)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHH
Confidence 4211 100000 00011111111111 133443 788888888887654 5
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
..+...+++.+.|||+++|.... +..+||+++.|.++.+...
T Consensus 181 ~~~l~~~~~~~~tii~~sh~~~~------------------~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 181 VSIIRELAETGITQVIVTHEVEV------------------ARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHH------------------HHHhcCEEEEEECCEEEEe
Confidence 55566555678999999997654 4556888888887665443
No 177
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.42 E-value=3.9e-13 Score=122.76 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=99.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHH-HHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT-LIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~-~~~ 133 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++...... ...++.+|+..++...++.+.+..... ...
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~ 84 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGG-VILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIALAVDRVLP 84 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCCCC--hhheEEecCcccCCCCCHHHHHHHHHHhccc
Confidence 6799999999999999999999999998888887 556654332211 124788888777766787777654211 000
Q ss_pred cCC-----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 134 SGS-----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 134 ~~~-----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
... ...+-++...... ...+++ |++|+...+|+++.. +.++...+.
T Consensus 85 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 161 (230)
T TIGR01184 85 DLSKSERRAIVEEHIALVGLTEAADKR-PGQLSG--GMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW 161 (230)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 000 0111111111111 233444 788888888877653 445444443
Q ss_pred h-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 183 L-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 183 ~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+ .++|||+++|.... +..+||+++.|+++.++..
T Consensus 162 ~~~~~tii~~sH~~~~------------------~~~~~d~v~~l~~G~i~~~ 196 (230)
T TIGR01184 162 EEHRVTVLMVTHDVDE------------------ALLLSDRVVMLTNGPAANI 196 (230)
T ss_pred HhcCCEEEEEeCCHHH------------------HHHhcCEEEEEeCCcEecc
Confidence 3 58999999997654 5667899999987765443
No 178
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.42 E-value=4.8e-13 Score=122.95 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=101.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEeCCCCCC--H-HH-HhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHALD--P-SL-AETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~--~~~gg~vl~id~e~~~~--~-~~-~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++.. .+..|. +++++..... . .+ ...+++.+|+..++...++.+++...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~ 101 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGT-ILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSA 101 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcce-EEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHH
Confidence 6799999999999999999999999984 456676 6677654322 2 22 23478889988777777787776543
Q ss_pred HHHHhcC------C-----------ceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 129 DTLIRSG------S-----------VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 129 ~~~~~~~------~-----------~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
....... . ...+-++ .+....+...+++ |++|+...||+++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 179 (243)
T TIGR01978 102 LNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSG--GEKKRNEILQMALLEPKLAILDEIDSGLDIDA 179 (243)
T ss_pred HHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 2211100 0 0000011 1111111112444 888888888887653
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeee-ceEEEEEEEeceeecC
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFY-ASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~-ad~~i~l~~~~~~~~~ 235 (366)
+.++...+++.+.|||+++|..+. +..+ ||+++.|+++.+...+
T Consensus 180 ~~~l~~~l~~~~~~~~tvi~vsH~~~~------------------~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 180 LKIVAEGINRLREPDRSFLIITHYQRL------------------LNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHHCCcEEEEEEecHHH------------------HHhhcCCeEEEEeCCEEEEec
Confidence 556666655668999999997654 4455 7888888877654443
No 179
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=3.9e-13 Score=128.56 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=102.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC------------------C-HHHHhhcccccCcc-
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------------------D-PSLAETIGVKTENL- 113 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~------------------~-~~~~~~ig~~~~~~- 113 (366)
-|++|++++|+|+||||||||++.+++.+.+..|. +++++.... . ..+.+.+++.+|+.
T Consensus 48 ~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~-I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~ 126 (320)
T PRK13631 48 TFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGT-IQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPE 126 (320)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCe-EEECCEEcccccccccccccccccccchHHHHHhcEEEEEECch
Confidence 37899999999999999999999999998888887 566653221 1 24567799999976
Q ss_pred -eecCCCCHHHHHHHHHHH-----------HhcCCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-------
Q 017792 114 -LLAQPDCGEQALSLVDTL-----------IRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA------- 173 (366)
Q Consensus 114 -~~~~~~~~e~~l~~~~~~-----------~~~~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------- 173 (366)
.++. .++.+.+.+.... +.. -...+-++ ....-. ...+++ |++|+...||+++..
T Consensus 127 ~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~-~l~~~gL~~~~~~~~-~~~LSg--GqkqRvaiAraL~~~p~iLLLD 201 (320)
T PRK13631 127 YQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKF-YLNKMGLDDSYLERS-PFGLSG--GQKRRVAIAGILAIQPEILIFD 201 (320)
T ss_pred hcccc-chHHHHHHhhHHhcCCCHHHHHHHHHH-HHHHcCCChhHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEE
Confidence 3433 3666554321110 000 00111111 111111 134444 889999999988764
Q ss_pred -------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 -------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 -------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+...+++.+.|||+++|..+. +..+||+++.|.++.++..+
T Consensus 202 EPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~------------------~~~~adri~vl~~G~i~~~g 258 (320)
T PRK13631 202 EPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEH------------------VLEVADEVIVMDKGKILKTG 258 (320)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 555555555569999999997654 45678999999988765554
No 180
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=1.1e-12 Score=121.30 Aligned_cols=158 Identities=16% Similarity=0.195 Sum_probs=101.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~ 126 (366)
+++|++++|+|+||||||||++.+++...+ ..|. +++++..... ..+.+.+++.+|+..++...++.+.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~ 104 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGE-VYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVA 104 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceE-EEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHH
Confidence 679999999999999999999999998764 3565 5666654321 345567999999887666677777765
Q ss_pred HHHHHHhc--C----------CceEEEEec-ccccC--CCCccCCccchhhHHHHHHHHHHH------------------
Q 017792 127 LVDTLIRS--G----------SVDVVVVDS-VAALV--PKGELDGEMGDAHMAMQARLMSQA------------------ 173 (366)
Q Consensus 127 ~~~~~~~~--~----------~~~lvviDs-l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~------------------ 173 (366)
........ . -...+-++. +.... +..++++ |++|+...||+++..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg--G~~qrv~laral~~~p~lllLDEP~~~LD~~~~ 182 (250)
T PRK14247 105 LGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSG--GQQQRLCIARALAFQPEVLLADEPTANLDPENT 182 (250)
T ss_pred HHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 43211000 0 000000110 00011 1234444 888888888887754
Q ss_pred --HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 --LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 --L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+.+ +.|||+++|.... +..+||+++.|.++.+...
T Consensus 183 ~~l~~~l~~~~~-~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14247 183 AKIESLFLELKK-DMTIVLVTHFPQQ------------------AARISDYVAFLYKGQIVEW 226 (250)
T ss_pred HHHHHHHHHHhc-CCEEEEEeCCHHH------------------HHHhcCEEEEEECCeEEEE
Confidence 5555555544 7999999997654 5567899999987765443
No 181
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=9.3e-13 Score=121.90 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=101.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+.+|++++|+|+||||||||++.+++.+.+. .|. ++++++... . ..+.+.+++.+|+..++...++.+.
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~en 105 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGE-VRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDN 105 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceE-EEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHH
Confidence 7799999999999999999999999988753 565 667765432 1 2345679999998877777777776
Q ss_pred HHHHHHHHhc---C---------CceEEEEec-ccccC--CCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 125 LSLVDTLIRS---G---------SVDVVVVDS-VAALV--PKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 125 l~~~~~~~~~---~---------~~~lvviDs-l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
+......... . -...+-++. +.... +...+++ |++|+...+|++...
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD~~ 183 (253)
T PRK14267 106 VAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG--GQRQRLVIARALAMKPKILLMDEPTANIDPV 183 (253)
T ss_pred HHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 6542211000 0 000000100 00001 1123443 788888888877654
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+.+ ++|||+++|.... +..+||+++.|.++.+...
T Consensus 184 ~~~~l~~~l~~~~~-~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 229 (253)
T PRK14267 184 GTAKIEELLFELKK-EYTIVLVTHSPAQ------------------AARVSDYVAFLYLGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHhh-CCEEEEEECCHHH------------------HHhhCCEEEEEECCEEEEe
Confidence 5555555444 6899999997654 5567899999987765443
No 182
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.41 E-value=6.2e-13 Score=123.03 Aligned_cols=158 Identities=16% Similarity=0.237 Sum_probs=101.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----------------HHHHhhcccccCcceecCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----------------PSLAETIGVKTENLLLAQP 118 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----------------~~~~~~ig~~~~~~~~~~~ 118 (366)
+++|++++|+|+||||||||++.+++...+.+|. ++++++.... ..+.+.+++.+|+..++..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQ-IQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPH 101 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCC
Confidence 6799999999999999999999999988887787 5566543321 1345678999998877776
Q ss_pred CCHHHHHHHHHHHHhcC-----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------
Q 017792 119 DCGEQALSLVDTLIRSG-----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------- 173 (366)
Q Consensus 119 ~~~e~~l~~~~~~~~~~-----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------- 173 (366)
.++.+.+.......... -...+-++....-. ...+++ |++|+...+|+++..
T Consensus 102 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD 178 (252)
T TIGR03005 102 KTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-PAQLSG--GQQQRVAIARALAMRPKVMLFDEVTSALD 178 (252)
T ss_pred CcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-hhhcCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 77776665421100000 00111111111111 123443 788888888887653
Q ss_pred ------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ .++|||+++|.... +..+||+++.|.++.++..
T Consensus 179 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i~~~ 228 (252)
T TIGR03005 179 PELVGEVLNVIRRLASEHDLTMLLVTHEMGF------------------AREFADRVCFFDKGRIVEQ 228 (252)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH------------------HHHhcCEEEEEECCEEEEe
Confidence 4444444444 58999999997654 4567899999987765433
No 183
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.41 E-value=9.1e-13 Score=131.15 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=107.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcceec--CCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLA--QPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~--~~~~~e~~l~~~ 128 (366)
+.+|++++|+|++|||||||++.+++...+.+|.+.|.+.+-... ....+++-+.+|+++.. +..|+.+++..-
T Consensus 314 l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~ep 393 (539)
T COG1123 314 LREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEP 393 (539)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhH
Confidence 679999999999999999999999999999888766655441111 23455677788877543 445666554432
Q ss_pred HHHHhcC-----------CceEEEEec-ccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 129 DTLIRSG-----------SVDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 129 ~~~~~~~-----------~~~lvviDs-l~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
....... -.+++-+.. +..-+ ..++++ |++|+..+||+++.. +.+
T Consensus 394 L~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ry-P~elSG--GQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~Vln 470 (539)
T COG1123 394 LRIHGGGSGAERRARVAELLELVGLPPEFLDRY-PHELSG--GQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470 (539)
T ss_pred HhhhcccchHHHHHHHHHHHHHcCCCHHHHhcC-chhcCc--chhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHH
Confidence 1111000 011122221 23333 356776 999999999998764 333
Q ss_pred HHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 177 LSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 177 L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
|.+.+ ++.|.|.|||+|.... +.+.||++..|++++++..|.
T Consensus 471 Ll~~lq~e~g~t~lfISHDl~v------------------V~~i~drv~vm~~G~iVE~G~ 513 (539)
T COG1123 471 LLKDLQEELGLTYLFISHDLAV------------------VRYIADRVAVMYDGRIVEEGP 513 (539)
T ss_pred HHHHHHHHhCCEEEEEeCCHHH------------------HHhhCceEEEEECCeEEEeCC
Confidence 33333 4679999999997764 778999999999998887763
No 184
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.41 E-value=3.7e-13 Score=131.07 Aligned_cols=160 Identities=16% Similarity=0.180 Sum_probs=106.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC----CC--CC-HH----HHhhcccccCcceecCCCCHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE----HA--LD-PS----LAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e----~~--~~-~~----~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
+++|++++|+|+||||||||++.+++.+.+..|. ++++++ .. .+ .. +.+.++|.+|+..+++..++.+
T Consensus 47 i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~-I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~e 125 (382)
T TIGR03415 47 IEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGS-VLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEE 125 (382)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE-EEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHH
Confidence 6799999999999999999999999998888887 567764 11 11 11 1246999999998888788877
Q ss_pred HHHHHHHHHh----------cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 124 ALSLVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 124 ~l~~~~~~~~----------~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
++.+...... ..-...+-++...... ..++++ |++|+...||+++..
T Consensus 126 Ni~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-~~~LSg--Gq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~ 202 (382)
T TIGR03415 126 NVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-PGELSG--GMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQ 202 (382)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 7654321100 0001111122111112 234544 888888888887764
Q ss_pred HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++...+.+ .+.|||+++|..+. +..+||+++.|+++.++..++
T Consensus 203 l~~~L~~l~~~~~~TII~iTHdl~e------------------~~~l~DrI~vl~~G~iv~~g~ 248 (382)
T TIGR03415 203 LQDELLELQAKLNKTIIFVSHDLDE------------------ALKIGNRIAIMEGGRIIQHGT 248 (382)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEecC
Confidence 4444444443 59999999998765 556788999998877665543
No 185
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.41 E-value=7.1e-13 Score=116.21 Aligned_cols=137 Identities=19% Similarity=0.261 Sum_probs=91.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHH-------
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQA------- 124 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~------- 124 (366)
-+++|++++|.|+||||||||++.+++...+..|. +++++..... ..+.+.+++.+|+..++. .++.+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i~~~LS~ 101 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGE-ITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNLGRRFSG 101 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCE-EEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhhcccCCH
Confidence 37799999999999999999999999998887887 4566543211 234567899998876653 344443
Q ss_pred -----HHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 125 -----LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 125 -----l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
+.++..++ .+++++++|...+-... .-.+.+.+.|+++ . .+.|||+++|..+.
T Consensus 102 G~~qrv~laral~--~~p~~lllDEP~~~LD~-------------~~~~~l~~~l~~~----~-~~~tii~~sh~~~~-- 159 (178)
T cd03247 102 GERQRLALARILL--QDAPIVLLDEPTVGLDP-------------ITERQLLSLIFEV----L-KDKTLIWITHHLTG-- 159 (178)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEECCcccCCH-------------HHHHHHHHHHHHH----c-CCCEEEEEecCHHH--
Confidence 22233333 46789999988766520 1112233333333 3 37999999997654
Q ss_pred cccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 200 TFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 200 ~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+. .||+++.|+.+.+
T Consensus 160 ----------------~~-~~d~~~~l~~g~i 174 (178)
T cd03247 160 ----------------IE-HMDKILFLENGKI 174 (178)
T ss_pred ----------------HH-hCCEEEEEECCEE
Confidence 43 4788888876543
No 186
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.41 E-value=2e-12 Score=111.78 Aligned_cols=131 Identities=15% Similarity=0.206 Sum_probs=89.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcceecCCCCHHH--HHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQ--ALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~~~~~~e~--~l~~~ 128 (366)
+++|++++|.|+||||||||++.+++...+..|. +++++..... ..+.+.+++.+| .+.-+ -+.++
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-v~~~g~~~~~~~~~~~~~~~i~~~~q-------LS~G~~qrl~la 94 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE-ILVDGKEVSFASPRDARRAGIAMVYQ-------LSVGERQMVEIA 94 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEECCcCCHHHHHhcCeEEEEe-------cCHHHHHHHHHH
Confidence 7899999999999999999999999998888887 5666654322 123456777766 44433 33344
Q ss_pred HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee
Q 017792 129 DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE 208 (366)
Q Consensus 129 ~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~ 208 (366)
..++ .+++++++|....-.. . ...+.+...|+.+ .+.+.|||+++|....
T Consensus 95 ral~--~~p~illlDEP~~~LD----------~---~~~~~l~~~l~~~----~~~~~tiii~sh~~~~----------- 144 (163)
T cd03216 95 RALA--RNARLLILDEPTAALT----------P---AEVERLFKVIRRL----RAQGVAVIFISHRLDE----------- 144 (163)
T ss_pred HHHh--cCCCEEEEECCCcCCC----------H---HHHHHHHHHHHHH----HHCCCEEEEEeCCHHH-----------
Confidence 4444 3689999999876552 0 1123333444444 3458999999997654
Q ss_pred eccCCceeeeeceEEEEEEEec
Q 017792 209 VTCGGNALKFYASVRLNIKRIG 230 (366)
Q Consensus 209 ~~~gG~~l~~~ad~~i~l~~~~ 230 (366)
+..+||+++.|.++.
T Consensus 145 -------~~~~~d~~~~l~~g~ 159 (163)
T cd03216 145 -------VFEIADRVTVLRDGR 159 (163)
T ss_pred -------HHHhCCEEEEEECCE
Confidence 455688888887654
No 187
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.41 E-value=3.5e-13 Score=121.50 Aligned_cols=150 Identities=18% Similarity=0.224 Sum_probs=95.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceec--CCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLA--QPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~--~~~~~e~~l~~~~~~~ 132 (366)
+++|++++|+||||||||||++.+++...+..|. +++++.... .+.+.+++.+|+..+. .+.++.+.+.......
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~ 98 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGS-IRVFGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGH 98 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCE-EEECCccHH--HHHhheEEeccccccccCCCCcHHHHHHhccccc
Confidence 6799999999999999999999999988888887 556654321 3456789999886542 2256666554321100
Q ss_pred -----------hc---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 133 -----------RS---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 133 -----------~~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
.. .-...+-++...... ...+++ |++|+...||+++.. +.++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 175 (213)
T cd03235 99 KGLFRRLSKADKAKVDEALERVGLSELADRQ-IGELSG--GQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELL 175 (213)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCHHHHhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 00 000111111111111 234444 788888888877653 55555
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
..+.+.+.|||+++|..+. +..+||+++.|.+
T Consensus 176 ~~~~~~~~tvi~~sH~~~~------------------~~~~~d~i~~l~~ 207 (213)
T cd03235 176 RELRREGMTILVVTHDLGL------------------VLEYFDRVLLLNR 207 (213)
T ss_pred HHHHhcCCEEEEEeCCHHH------------------HHHhcCEEEEEcC
Confidence 5555568999999997764 4556888888865
No 188
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.41 E-value=5.3e-13 Score=122.30 Aligned_cols=156 Identities=16% Similarity=0.153 Sum_probs=98.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+.+|++++|+|+||||||||++.+++...+..|. +++++.... .....+.+++.+|+..++...++.+.+.......
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 102 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQ-ISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH 102 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc
Confidence 7799999999999999999999999988888787 556654322 2233457899999877666667766654322110
Q ss_pred hcC------C----ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSG------S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~------~----~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
... . ...+-++...... ...+++ |++|+...||+++.. +.++...+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 179 (236)
T TIGR03864 103 GLSRAEARERIAALLARLGLAERADDK-VRELNG--GHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALC 179 (236)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 000 0 0000011110111 123443 788888888877654 445554444
Q ss_pred -hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 183 -LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 183 -~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.+.|||+++|..+. +. .||+++.|.++.++.
T Consensus 180 ~~~~~tiii~sH~~~~------------------~~-~~d~i~~l~~G~i~~ 212 (236)
T TIGR03864 180 RDQGLSVLWATHLVDE------------------IE-ADDRLVVLHRGRVLA 212 (236)
T ss_pred HhCCCEEEEEecChhh------------------Hh-hCCEEEEEeCCeEEE
Confidence 358999999997654 43 388888888765443
No 189
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=5e-13 Score=125.61 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=100.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC------C-HHHHhhcccccCcc--eecCCCCHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------D-PSLAETIGVKTENL--LLAQPDCGEQA 124 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~------~-~~~~~~ig~~~~~~--~~~~~~~~e~~ 124 (366)
-+++|++++|+|+||||||||++.+++.+.+..|. +++++.... . ..+.+.++|.+|+. .++. .++.+.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~ 106 (280)
T PRK13649 29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGS-VRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKD 106 (280)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHH
Confidence 37799999999999999999999999988888887 566664321 1 23456789999985 3333 477666
Q ss_pred HHHHHHHHhcC--C--------ceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 125 LSLVDTLIRSG--S--------VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~--~--------~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+.+........ . ...+-++ ..... +...+++ |++|+...||+++..
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 183 (280)
T PRK13649 107 VAFGPQNFGVSQEEAEALAREKLALVGISESLFEK-NPFELSG--GQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKE 183 (280)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC-CcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 54321110000 0 0011111 01111 1234444 888888888887654
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+..+...+++.++|||+++|..+. +..+||+++.|.++.+..
T Consensus 184 l~~~l~~~~~~~~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i~~ 225 (280)
T PRK13649 184 LMTLFKKLHQSGMTIVLVTHLMDD------------------VANYADFVYVLEKGKLVL 225 (280)
T ss_pred HHHHHHHHHHCCCEEEEEeccHHH------------------HHHhCCEEEEEECCEEEE
Confidence 555555555568999999997654 556789999998765443
No 190
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.41 E-value=8e-12 Score=114.75 Aligned_cols=194 Identities=19% Similarity=0.240 Sum_probs=113.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhh------------cCCeEEEEeCCCCCCH--HHHhhccccc------Cccee--
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQR------------QGGYCVFIDAEHALDP--SLAETIGVKT------ENLLL-- 115 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~------------~gg~vl~id~e~~~~~--~~~~~ig~~~------~~~~~-- 115 (366)
|.+..|+||+|+|||+|+++++..++. .+++|+|++.|+..+. .+...++... .++.+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~ 80 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS 80 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence 678999999999999999999986542 4678999999987652 2223332211 11211
Q ss_pred --------cCCC--CHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcC
Q 017792 116 --------AQPD--CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQ 185 (366)
Q Consensus 116 --------~~~~--~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~ 185 (366)
.... .....++.+...+...++++++||++..+....+.+ . ...+.+...|.++. ++.|
T Consensus 81 g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d-----~---~~~~~~~~~L~~~a---~~~g 149 (239)
T cd01125 81 GRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSEND-----N---GAMDAVIKALRRIA---AQTG 149 (239)
T ss_pred cCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCC-----H---HHHHHHHHHHHHHH---HHhC
Confidence 1110 122333333333334679999999988774211111 1 12233334444444 5679
Q ss_pred cEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec-----CccccccEEEEEEEecCCC-CCCCee
Q 017792 186 TILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK-----GEETIGSQIAVKIVKNKLA-PPFKTA 259 (366)
Q Consensus 186 ~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~-----~~~~~g~~~~l~v~K~r~~-~~~~~~ 259 (366)
++||+++|.++.-... ........|..++...++.++.+.+...... +.+..+..+++.+.|+.++ +|....
T Consensus 150 ~avl~v~H~~K~~~~~--~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~~~~~~~~~ 227 (239)
T cd01125 150 AAILLVHHVRKGSAKD--GDTQEAARGASALVDGARWVRALTRMTSEEAEKMGVGKAQPGLFFRFGVSKKNNAAATEADR 227 (239)
T ss_pred CEEEEEeccCcccccC--cccccccCcHHHHhcccceEEEEeeCCHHHHHhcCCChhhcceEEEecccccccCCCCCCCe
Confidence 9999999988653211 0122445677778888888888886532111 1122233445678888887 665555
Q ss_pred EEEEE
Q 017792 260 QFELE 264 (366)
Q Consensus 260 ~~~i~ 264 (366)
.|...
T Consensus 228 w~~~~ 232 (239)
T cd01125 228 WYRRN 232 (239)
T ss_pred EEEEc
Confidence 55554
No 191
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=8.3e-13 Score=121.43 Aligned_cols=155 Identities=21% Similarity=0.230 Sum_probs=98.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++.... . ..+.+.+++.+|+..++. .++.+.+......
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~ 103 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS-ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPML 103 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhh
Confidence 6799999999999999999999999988888887 455654321 1 244567899999876654 4666554321110
Q ss_pred Hhc------CCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh-
Q 017792 132 IRS------GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL- 183 (366)
Q Consensus 132 ~~~------~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~- 183 (366)
... .-...+-++ .+.... ...+++ |++|+...||+++.. +..+...+++
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 180 (241)
T PRK14250 104 KGEKNVDVEYYLSIVGLNKEYATRD-VKNLSG--GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNK 180 (241)
T ss_pred cCcHHHHHHHHHHHcCCCHHHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 000 000011111 111111 233444 788888888877654 4455555444
Q ss_pred cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 184 ~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
.+.|||+++|..+. +..+||+++.|.++.+.
T Consensus 181 ~g~tii~~sH~~~~------------------~~~~~d~i~~l~~G~i~ 211 (241)
T PRK14250 181 MNLTVIWITHNMEQ------------------AKRIGDYTAFLNKGILV 211 (241)
T ss_pred CCCEEEEEeccHHH------------------HHHhCCEEEEEeCCEEE
Confidence 58999999997764 45678999998876543
No 192
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=8.2e-13 Score=122.39 Aligned_cols=157 Identities=16% Similarity=0.165 Sum_probs=100.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHH-HhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSL-AETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~-~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+.+|++++|+|+||||||||++.+++...+..|. +++++..... ..+ ...+++.+|+..++...++.+.+.....
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 106 (255)
T PRK11300 28 VREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGT-ILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQH 106 (255)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcce-EEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhh
Confidence 6799999999999999999999999998888887 5666654322 122 2347778898877777788776654211
Q ss_pred ----------HHh-----cC------C----ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH------------
Q 017792 131 ----------LIR-----SG------S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------ 173 (366)
Q Consensus 131 ----------~~~-----~~------~----~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------ 173 (366)
... .. . .+.+-++....-. ...+++ |++|+...|+++...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEPt~~ 183 (255)
T PRK11300 107 QQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ-AGNLAY--GQQRRLEIARCMVTQPEILMLDEPAAG 183 (255)
T ss_pred ccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 000 00 0 0000011111111 123443 788888888877654
Q ss_pred --------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 --------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 --------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.++...+++ .++|||+++|..+. +..+||.++.|+++.+..
T Consensus 184 LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~------------------~~~~~d~i~~l~~g~i~~ 234 (255)
T PRK11300 184 LNPKETKELDELIAELRNEHNVTVLLIEHDMKL------------------VMGISDRIYVVNQGTPLA 234 (255)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCeEEe
Confidence 5555555554 48999999997664 556789998888765443
No 193
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=4.6e-13 Score=125.53 Aligned_cols=158 Identities=20% Similarity=0.269 Sum_probs=101.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcce-ecCCCCHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLL-LAQPDCGEQALSLVD 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~ 129 (366)
|++|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|++. .+...++.+.+.+..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~ 103 (274)
T PRK13644 25 IKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGK-VLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGP 103 (274)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhH
Confidence 7799999999999999999999999988887786 5666654321 345567999998864 233456666554321
Q ss_pred HHH-------hc---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 130 TLI-------RS---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 130 ~~~-------~~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
... .. .-...+-++...... ...+++ |++|+...||+++.. +.++..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 180 (274)
T PRK13644 104 ENLCLPPIEIRKRVDRALAEIGLEKYRHRS-PKTLSG--GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIK 180 (274)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 110 00 000011111111111 234444 788888888887654 555555
Q ss_pred HhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 180 SLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 180 ~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.+++.|.|||+++|..+. +. .||+++.|.++.++..+
T Consensus 181 ~l~~~g~til~~tH~~~~------------------~~-~~d~v~~l~~G~i~~~g 217 (274)
T PRK13644 181 KLHEKGKTIVYITHNLEE------------------LH-DADRIIVMDRGKIVLEG 217 (274)
T ss_pred HHHhCCCEEEEEecCHHH------------------Hh-hCCEEEEEECCEEEEEC
Confidence 555679999999997764 43 48999999887655443
No 194
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.40 E-value=7.3e-13 Score=130.96 Aligned_cols=164 Identities=23% Similarity=0.242 Sum_probs=110.8
Q ss_pred ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CHHHHhh--cccccCcceecC
Q 017792 42 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAET--IGVKTENLLLAQ 117 (366)
Q Consensus 42 G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~~~~~~--ig~~~~~~~~~~ 117 (366)
|+..||.+-- -+.+|++++|+|.||+|||||++.+++.+++.+|. ++++++... ++.-++. +.+++|++.+++
T Consensus 20 gV~AL~~v~l--~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~-I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p 96 (500)
T COG1129 20 GVKALDGVSL--TVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE-ILIDGKPVAFSSPRDALAAGIATVHQELSLVP 96 (500)
T ss_pred Cceeecccee--EEeCceEEEEecCCCCCHHHHHHHHhCcccCCCce-EEECCEEccCCCHHHHHhCCcEEEeechhccC
Confidence 4455554422 37799999999999999999999999999999886 777776442 3444444 556788888888
Q ss_pred CCCHHHHHHHHH-------------------HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----
Q 017792 118 PDCGEQALSLVD-------------------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----- 173 (366)
Q Consensus 118 ~~~~e~~l~~~~-------------------~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----- 173 (366)
..|+.+++-+-. .++...... +| +.... ..++ .+++|...+||+++..
T Consensus 97 ~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~---~~-~~~~v--~~Ls--iaqrQ~VeIArAl~~~arllI 168 (500)
T COG1129 97 NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD---ID-PDTLV--GDLS--IAQRQMVEIARALSFDARVLI 168 (500)
T ss_pred CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC---CC-hhhhh--hhCC--HHHHHHHHHHHHHhcCCCEEE
Confidence 777766653211 111111111 11 22222 2222 3677777777776543
Q ss_pred ---------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
|.++.+.|++.|++||+|||..++ +..+||++..|+++..+..
T Consensus 169 lDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~E------------------i~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 169 LDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDE------------------VFEIADRITVLRDGRVVGT 226 (500)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH------------------HHHhcCEEEEEeCCEEeee
Confidence 778888888999999999998776 5567788877877765543
No 195
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=7.9e-13 Score=115.16 Aligned_cols=134 Identities=18% Similarity=0.256 Sum_probs=90.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHH-------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQA------- 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~------- 124 (366)
+++|++++|.||||||||||++.+++...+..|. ++++++... . ..+.+.+++.+++..+++ .++.+.
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~lLS~G~~ 102 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGE-ILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENILSGGQR 102 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCE-EEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHhhCHHHH
Confidence 7799999999999999999999999998888887 566665432 1 244567899988876654 465544
Q ss_pred --HHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc
Q 017792 125 --LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG 202 (366)
Q Consensus 125 --l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~ 202 (366)
+.++..++ .+++++++|...+-... .-.+ .+.++...+.+ ++|||+++|..+.
T Consensus 103 ~rl~la~al~--~~p~llllDEP~~gLD~-------------~~~~----~l~~~l~~~~~-~~tii~~sh~~~~----- 157 (171)
T cd03228 103 QRIAIARALL--RDPPILILDEATSALDP-------------ETEA----LILEALRALAK-GKTVIVIAHRLST----- 157 (171)
T ss_pred HHHHHHHHHh--cCCCEEEEECCCcCCCH-------------HHHH----HHHHHHHHhcC-CCEEEEEecCHHH-----
Confidence 22333333 36799999998766520 0112 23333333333 6999999997654
Q ss_pred CCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 203 FGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 203 ~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
+.. ||.++.|+++
T Consensus 158 -------------~~~-~d~~~~l~~g 170 (171)
T cd03228 158 -------------IRD-ADRIIVLDDG 170 (171)
T ss_pred -------------HHh-CCEEEEEcCC
Confidence 444 7887777643
No 196
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.40 E-value=1.1e-12 Score=122.24 Aligned_cols=158 Identities=14% Similarity=0.123 Sum_probs=100.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEeCCCCCC--------HHHHhhcccccCcceecCCCCHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALD--------PSLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~---gg~vl~id~e~~~~--------~~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
+++|++++|+|+||||||||++.+++.+.+. +|. +++++..... ..+.+.+++.+|+..++...++.+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 105 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSH-IELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLE 105 (262)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceE-EEECCEecccccccchhHHHHHhheEEEccccccccCCcHHH
Confidence 6799999999999999999999999988764 355 5666654321 233567899999887776677776
Q ss_pred HHHHHHHH-----------Hhc-------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH------------
Q 017792 124 ALSLVDTL-----------IRS-------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------ 173 (366)
Q Consensus 124 ~l~~~~~~-----------~~~-------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------ 173 (366)
.+...... ... .-...+-++...... ...+++ |++|+...+|++...
T Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~ 182 (262)
T PRK09984 106 NVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR-VSTLSG--GQQQRVAIARALMQQAKVILADEPIAS 182 (262)
T ss_pred HHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-ccccCH--HHHHHHHHHHHHhcCCCEEEecCcccc
Confidence 66432100 000 000001111111111 123443 788888888877653
Q ss_pred --------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 --------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 --------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ .+.|||+++|.... +..+||+++.|.++.+...
T Consensus 183 LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~------------------~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 183 LDPESARIVMDTLRDINQNDGITVVVTLHQVDY------------------ALRYCERIVALRQGHVFYD 234 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 5555555543 48999999997654 4567899999887654433
No 197
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=1.2e-12 Score=123.49 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=102.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HHHHhhcccccCcc--eecCCCCHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENL--LLAQPDCGEQA 124 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~~~~~ig~~~~~~--~~~~~~~~e~~ 124 (366)
=|++|++++|+|+||||||||++.+++...+..|. +++++..... ..+.+.+|+.+|++ .++. .++.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~ 106 (286)
T PRK13646 29 EFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGT-VTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVERE 106 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHH
Confidence 37799999999999999999999999998888887 5667654321 24567899999975 2332 366665
Q ss_pred HHHHHHHH-------hc---CCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 125 LSLVDTLI-------RS---GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 125 l~~~~~~~-------~~---~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+.+..... .. .-...+-++ ....- +...+++ |++|+...||+++..
T Consensus 107 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~~LSg--Gq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~ 183 (286)
T PRK13646 107 IIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQ-SPFQMSG--GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQ 183 (286)
T ss_pred HHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC-CcccCCH--HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence 54321100 00 000011111 11111 1233444 888888888887664
Q ss_pred HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+...+++ .|+|||+++|..+. +..+||+++.|.++.++..+
T Consensus 184 l~~~l~~l~~~~g~tvl~vtH~~~~------------------~~~~~dri~~l~~G~i~~~g 228 (286)
T PRK13646 184 VMRLLKSLQTDENKTIILVSHDMNE------------------VARYADEVIVMKEGSIVSQT 228 (286)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEEC
Confidence 5565655543 58999999997764 45678999999887655444
No 198
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=1.2e-12 Score=123.01 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=100.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce-ecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+.. .....++.+.+.....
T Consensus 27 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~ 105 (277)
T PRK13652 27 APRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGS-VLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPI 105 (277)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHH
Confidence 6799999999999999999999999988888887 5666654322 355677899998863 2224566666543211
Q ss_pred HHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 131 LIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 131 ~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
..... -...+-+....... ...+++ |++++...+|+++.. +.++...
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~ 182 (277)
T PRK13652 106 NLGLDEETVAHRVSSALHMLGLEELRDRV-PHHLSG--GEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLND 182 (277)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 00000 00000011110111 123443 778877888877654 5555555
Q ss_pred hhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 181 LSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 181 l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+ .++|||+++|..+. +..+||+++.|+++.++..+
T Consensus 183 l~~~~g~tvli~tH~~~~------------------~~~~~drv~~l~~G~i~~~g 220 (277)
T PRK13652 183 LPETYGMTVIFSTHQLDL------------------VPEMADYIYVMDKGRIVAYG 220 (277)
T ss_pred HHHhcCCEEEEEecCHHH------------------HHHhCCEEEEEECCeEEEEC
Confidence 544 48999999997664 55678999999887655444
No 199
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.40 E-value=1e-12 Score=119.04 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=98.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-H---H-HhhcccccCcceecCCCCHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S---L-AETIGVKTENLLLAQPDCGEQALS 126 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~---~-~~~ig~~~~~~~~~~~~~~e~~l~ 126 (366)
-+++|++++|+||||||||||++.+++...+..|. ++++++.... . . + .+.+++.+|+..++...++.+.+.
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 105 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE-VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVA 105 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHH
Confidence 36799999999999999999999999998888887 5666553221 1 1 2 256999999987777778777665
Q ss_pred HHHHHHhc----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 127 LVDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 127 ~~~~~~~~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
........ .-...+-++...... ...+++ |++|+...||+++.. +.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 182 (221)
T TIGR02211 106 MPLLIGKKSVKEAKERAYEMLEKVGLEHRINHR-PSELSG--GERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD 182 (221)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 42110000 000111112111111 134444 788888888877654 555
Q ss_pred HHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEec
Q 017792 177 LSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 230 (366)
Q Consensus 177 L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~ 230 (366)
+...+.+ .+.|||+++|.... +.. +|+++.|.++.
T Consensus 183 ~l~~~~~~~~~tii~~tH~~~~------------------~~~-~d~v~~l~~G~ 218 (221)
T TIGR02211 183 LMLELNRELNTSFLVVTHDLEL------------------AKK-LDRVLEMKDGQ 218 (221)
T ss_pred HHHHHHHhcCCEEEEEeCCHHH------------------Hhh-cCEEEEEeCCE
Confidence 5555543 58999999997653 333 58888887653
No 200
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=5.1e-13 Score=122.10 Aligned_cols=158 Identities=15% Similarity=0.218 Sum_probs=103.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI- 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~- 132 (366)
+.+|++++|+|+||||||||++.+++.+.+..|. ++++++.... ....+.+++.+++..++...++.+.+.......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~-i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~ 101 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGE-ILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK 101 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC
Confidence 6699999999999999999999999999887776 5666654322 123467899999887776667776654322110
Q ss_pred ------h---cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh
Q 017792 133 ------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL 183 (366)
Q Consensus 133 ------~---~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~ 183 (366)
. ..-...+-++...... ...+++ |++++...+|++... +.++...+++
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~lS~--G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~ 178 (232)
T cd03300 102 LPKAEIKERVAEALDLVQLEGYANRK-PSQLSG--GQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK 178 (232)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 0001111122211111 133443 788888888877653 5555555554
Q ss_pred -cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 184 -SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 184 -~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
.++|||+++|.... +..+||+++.|.++.+...
T Consensus 179 ~~~~tiii~sh~~~~------------------~~~~~d~i~~l~~G~~~~~ 212 (232)
T cd03300 179 ELGITFVFVTHDQEE------------------ALTMSDRIAVMNKGKIQQI 212 (232)
T ss_pred HcCCEEEEEeCCHHH------------------HHHhcCEEEEEECCEEEec
Confidence 48999999997754 5567899999987654433
No 201
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.40 E-value=6e-13 Score=122.02 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=96.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CHHHHhhccccc-CcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKT-ENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~~~~~~ig~~~-~~~~~~~~~~~e~~l~~~~~~ 131 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++.... ...+.+.+++.+ +...++...++.+.+......
T Consensus 44 i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~ 122 (236)
T cd03267 44 IEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGE-VRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAI 122 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHH
Confidence 6799999999999999999999999988888786 556654322 123456788876 445555566777766543221
Q ss_pred HhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 132 IRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 132 ~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
.... -.+.+-++...... ...+++ |++++...+++++.. +..+...+
T Consensus 123 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 199 (236)
T cd03267 123 YDLPPARFKKRLDELSELLDLEELLDTP-VRQLSL--GQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEY 199 (236)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 1000 00111111111111 123443 777777777777653 55555544
Q ss_pred hh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 182 SL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 182 ~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
.+ .++|||+++|..+. +..+||.++.|.++.+
T Consensus 200 ~~~~~~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i 232 (236)
T cd03267 200 NRERGTTVLLTSHYMKD------------------IEALARRVLVIDKGRL 232 (236)
T ss_pred HhcCCCEEEEEecCHHH------------------HHHhCCEEEEEeCCEE
Confidence 33 48999999997764 5567888888876643
No 202
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.40 E-value=1.7e-12 Score=117.13 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=96.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
-+.+|++++|.|+||||||||++.+++.+.+..|. ++++++......+.+.+++.+++..+....++.+.+........
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~ 111 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQ-IQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG 111 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCee-EEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC
Confidence 37799999999999999999999999998888887 55666543333344568888888776666677666544321100
Q ss_pred cC-------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcCc
Q 017792 134 SG-------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQT 186 (366)
Q Consensus 134 ~~-------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~~ 186 (366)
.. -...+-+....... ...+++ |++++...+|+++.. +..+...+.+.+.
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 188 (214)
T PRK13543 112 RRAKQMPGSALAIVGLAGYEDTL-VRQLSA--GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGG 188 (214)
T ss_pred CcHHHHHHHHHHHcCChhhccCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 00 00001011111111 123333 777777777776643 5555555556689
Q ss_pred EEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 187 ILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 187 tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
|||+++|.... +..+|++++.+.
T Consensus 189 tiii~sH~~~~------------------~~~~~~~i~~l~ 211 (214)
T PRK13543 189 AALVTTHGAYA------------------APPVRTRMLTLE 211 (214)
T ss_pred EEEEEecChhh------------------hhhhcceEEEEe
Confidence 99999997765 555677776664
No 203
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=8.4e-13 Score=122.44 Aligned_cols=150 Identities=19% Similarity=0.180 Sum_probs=96.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... ....+++.+|+..++...++.+.+.........
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 100 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGS-ITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGV 100 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCC--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCC
Confidence 6799999999999999999999999988888887 4566543322 123578888887776667777766542111000
Q ss_pred C----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-hh
Q 017792 135 G----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-SL 183 (366)
Q Consensus 135 ~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~~ 183 (366)
. -...+-++...... ...+++ |++|+...+|+++.. +..+...+ ++
T Consensus 101 ~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSg--Gq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 177 (255)
T PRK11248 101 EKMQRLEIAHQMLKKVGLEGAEKRY-IWQLSG--GQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE 177 (255)
T ss_pred CHHHHHHHHHHHHHHcCChhHhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 0 00011111111111 133444 788888888877654 55555554 34
Q ss_pred cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 184 ~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
.++|||+++|..+. +..+||+++.|++
T Consensus 178 ~g~tviivsH~~~~------------------~~~~~d~i~~l~~ 204 (255)
T PRK11248 178 TGKQVLLITHDIEE------------------AVFMATELVLLSP 204 (255)
T ss_pred cCCEEEEEeCCHHH------------------HHHhCCEEEEEeC
Confidence 58999999997764 5567898888873
No 204
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.2e-12 Score=122.94 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=99.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce-ecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~~ 130 (366)
|.+|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.++|.+|++. .+...++.+.+.+...
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~-i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~ 108 (279)
T PRK13635 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT-ITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLE 108 (279)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE-EEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHh
Confidence 7799999999999999999999999999888887 5666654322 245667999999863 3444566666543211
Q ss_pred HHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 131 LIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 131 ~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
..... -...+-+....... ...+++ |++++...+|+++.. +.++...
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS~--G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 185 (279)
T PRK13635 109 NIGVPREEMVERVDQALRQVGMEDFLNRE-PHRLSG--GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQ 185 (279)
T ss_pred hCCCCHHHHHHHHHHHHHHcCChhhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 10000 00011111111111 123443 777777777776654 5555555
Q ss_pred hhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 181 LSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 181 l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+ .++|||+++|..+. +. .||+++.|.++.+...+
T Consensus 186 l~~~~~~tilivsH~~~~------------------~~-~~d~i~~l~~G~i~~~g 222 (279)
T PRK13635 186 LKEQKGITVLSITHDLDE------------------AA-QADRVIVMNKGEILEEG 222 (279)
T ss_pred HHHcCCCEEEEEecCHHH------------------HH-cCCEEEEEECCEEEEEC
Confidence 554 48999999997654 44 38999999877654433
No 205
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.39 E-value=1.6e-12 Score=120.77 Aligned_cols=158 Identities=15% Similarity=0.153 Sum_probs=100.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
-+++|++++|+|+||||||||++.+++...+ ..|. +++++..... ..+.+.++|.+|+..++. .++.+
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 111 (258)
T PRK14268 34 QIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGK-VSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYD 111 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceE-EEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHH
Confidence 3779999999999999999999999988764 4665 5666654321 234567999999877665 67777
Q ss_pred HHHHHHHHHhcC----------CceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 124 ALSLVDTLIRSG----------SVDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 124 ~l~~~~~~~~~~----------~~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
.+.+........ -...+-++ .+.... +...+++ |++|+...||+++..
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~~~ 189 (258)
T PRK14268 112 NVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSG--GQQQRLCIARTLAVKPKIILFDEPTSALDPIS 189 (258)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHH
Confidence 665432110000 00000000 000111 1233444 888888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++.+.+.+ ++|||+++|.... +..+||+++.|.++++...
T Consensus 190 ~~~l~~~l~~l~~-~~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 190 TARIEDLIMNLKK-DYTIVIVTHNMQQ------------------AARISDYTGFFLMGELIEF 234 (258)
T ss_pred HHHHHHHHHHHhh-CCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 5555555544 7999999997654 5567899999987765443
No 206
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.39 E-value=6.9e-13 Score=122.37 Aligned_cols=156 Identities=16% Similarity=0.151 Sum_probs=101.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+. .|. +++++..... ..+.+.+++.+|+..++. .++.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~ 101 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGK-VLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDN 101 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceE-EEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHH
Confidence 7799999999999999999999999998876 776 5566654321 234567999999877666 777766
Q ss_pred HHHHHHHHhcCC-----------ceEEEEe----cccccCCCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVVD----SVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvviD----sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
+........... ...+-++ ..... +...+++ |++|+...||+++..
T Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~~ 178 (247)
T TIGR00972 102 IAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHD-SALGLSG--GQQQRLCIARALAVEPEVLLLDEPTSALDPI 178 (247)
T ss_pred HHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhC-CcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 543221100000 0000011 10011 1234444 888888888887754
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+++ ++|||+++|.... +..+||+++.|+++.+...
T Consensus 179 ~~~~l~~~l~~~~~-~~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i~~~ 224 (247)
T TIGR00972 179 ATGKIEELIQELKK-KYTIVIVTHNMQQ------------------AARISDRTAFFYDGELVEY 224 (247)
T ss_pred HHHHHHHHHHHHHh-cCeEEEEecCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 5555555555 4899999997654 5567899999987765433
No 207
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.39 E-value=1.1e-12 Score=122.40 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=101.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H----HHHhhcccccCcc--eecCCCCHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----SLAETIGVKTENL--LLAQPDCGEQALS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~----~~~~~ig~~~~~~--~~~~~~~~e~~l~ 126 (366)
+++|++++|.|+||||||||++.+++.+.+..|. ++++++.... . .+.+.+++.+|+. .+....++.+.+.
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~ 112 (265)
T TIGR02769 34 IEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGT-VSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIG 112 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHH
Confidence 6799999999999999999999999988888887 5666654322 1 2345699999986 3445567766553
Q ss_pred HHHHHHhcC-----------CceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------H
Q 017792 127 LVDTLIRSG-----------SVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 174 (366)
Q Consensus 127 ~~~~~~~~~-----------~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L 174 (366)
......... -...+-++ .+.... ...+++ |++|+...||+++.. +
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~LSg--Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l 189 (265)
T TIGR02769 113 EPLRHLTSLDESEQKARIAELLDMVGLRSEDADKL-PRQLSG--GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVI 189 (265)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 211100000 00111111 111111 234444 888888888887654 4
Q ss_pred HHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 175 RKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 175 ~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.++...+.+ .+.|||+++|.... +..+||.++.|.++.++..+
T Consensus 190 ~~~l~~~~~~~g~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i~~~g 233 (265)
T TIGR02769 190 LELLRKLQQAFGTAYLFITHDLRL------------------VQSFCQRVAVMDKGQIVEEC 233 (265)
T ss_pred HHHHHHHHHhcCcEEEEEeCCHHH------------------HHHHhcEEEEEeCCEEEEEC
Confidence 455554444 48999999997654 55678999999877654443
No 208
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=1.7e-12 Score=116.26 Aligned_cols=142 Identities=13% Similarity=0.048 Sum_probs=91.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh---hcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~---~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
+++|++++|+|+||||||||++.+++... +..|. +++++..... ..+.+.+++.+|+..++...++.+.+....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~-i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 108 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGD-IHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFAL 108 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceE-EEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhh
Confidence 67999999999999999999999999987 56676 5666654322 344567899998877777778888765432
Q ss_pred HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh-cCcEE
Q 017792 130 TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL-SQTIL 188 (366)
Q Consensus 130 ~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~-~~~tV 188 (366)
... .+ . ....+++ |++|+...||+++.. +.++...+.+ .+.++
T Consensus 109 ~~~---------~~---~--~~~~LS~--Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ 172 (202)
T cd03233 109 RCK---------GN---E--FVRGISG--GERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTT 172 (202)
T ss_pred hhc---------cc---c--chhhCCH--HHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 210 00 0 0122332 566666666665543 4444444433 36776
Q ss_pred EEEe-cCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 189 IFIN-QVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 189 I~i~-h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
|+++ |.... +..+||.++.|.++++
T Consensus 173 ii~~~h~~~~------------------~~~~~d~i~~l~~G~i 198 (202)
T cd03233 173 FVSLYQASDE------------------IYDLFDKVLVLYEGRQ 198 (202)
T ss_pred EEEEcCCHHH------------------HHHhCCeEEEEECCEE
Confidence 6654 53333 5567899998887654
No 209
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.39 E-value=9.2e-13 Score=120.25 Aligned_cols=158 Identities=18% Similarity=0.142 Sum_probs=98.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEeCCCCCCHHH-HhhcccccCcce--ecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHALDPSL-AETIGVKTENLL--LAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~----~gg~vl~id~e~~~~~~~-~~~ig~~~~~~~--~~~~~~~e~~l~~ 127 (366)
+++|++++|.||||||||||++.+++...+ ..|. +++++........ .+.+++.+|+.. +....++.+.+..
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~-i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~ 87 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGE-ILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIE 87 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccE-EEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHH
Confidence 679999999999999999999999999887 6776 5677654332222 357899998863 3344566554432
Q ss_pred HHHHHhcCC----------ceEEEEe---cccccCCCCccCCccchhhHHHHHHHHHHH--------------------H
Q 017792 128 VDTLIRSGS----------VDVVVVD---SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 174 (366)
Q Consensus 128 ~~~~~~~~~----------~~lvviD---sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L 174 (366)
......... .+.+-++ .+... +...+++ |++|+...||+++.. +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~LS~--G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l 164 (230)
T TIGR02770 88 TLRSLGKLSKQARALILEALEAVGLPDPEEVLKK-YPFQLSG--GMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARV 164 (230)
T ss_pred HHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhC-ChhhcCH--HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHH
Confidence 111000000 0000011 01111 1133444 888888888887654 4
Q ss_pred HHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 175 RKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 175 ~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
.++...+.+ .++|||+++|..+. +..+||+++.|.++.+...
T Consensus 165 ~~~l~~~~~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 207 (230)
T TIGR02770 165 LKLLRELRQLFGTGILLITHDLGV------------------VARIADEVAVMDDGRIVER 207 (230)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 455554444 58999999997664 5567899999987765443
No 210
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.38 E-value=2.1e-12 Score=119.49 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=98.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++... +..|. ++++++... + ..+.+.+++.+|+..++. .++.+.
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 106 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGE-ILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFEN 106 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceE-EEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHH
Confidence 67999999999999999999999998763 24565 667765432 1 234567999999876665 477776
Q ss_pred HHHHHHHHhcC-------C----ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSG-------S----VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~-------~----~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.......... . .+.+-+ +.+.... +...+++ |++|+...||+++..
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg--Gq~qrv~laral~~~p~llllDEPt~~LD~~~ 184 (253)
T PRK14242 107 VAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSG--GQQQRLCIARALAVEPEVLLMDEPASALDPIA 184 (253)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 65422110000 0 000000 0000111 1233444 888888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.++...+++ +.|||+++|.... +..+||+++.|+++.+..
T Consensus 185 ~~~l~~~l~~~~~-~~tvii~tH~~~~------------------~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14242 185 TQKIEELIHELKA-RYTIIIVTHNMQQ------------------AARVSDVTAFFYMGKLIE 228 (253)
T ss_pred HHHHHHHHHHHhc-CCeEEEEEecHHH------------------HHHhCCEEEEEECCEEEE
Confidence 5555555544 7899999997654 556789999998765443
No 211
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.38 E-value=1.3e-12 Score=116.79 Aligned_cols=142 Identities=20% Similarity=0.232 Sum_probs=92.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEeCCCCCC--H-HH-HhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHALD--P-SL-AETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~--~~~gg~vl~id~e~~~~--~-~~-~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+.+|++++|+|+||||||||++.+++.. .+..|. ++++++.... . .+ ...+++.+|+..++...++++++...
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~ 101 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGE-ILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV 101 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccE-EEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc
Confidence 6699999999999999999999999884 566776 5666654332 2 22 33588999887766656666554221
Q ss_pred ---------------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEec
Q 017792 129 ---------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 193 (366)
Q Consensus 129 ---------------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h 193 (366)
..+ ..+++++++|....-... .-.+.+...|+++ .+.++|||+++|
T Consensus 102 ~~~LS~G~~qrv~laral--~~~p~illlDEPt~~LD~-------------~~~~~l~~~L~~~----~~~~~tiii~sh 162 (200)
T cd03217 102 NEGFSGGEKKRNEILQLL--LLEPDLAILDEPDSGLDI-------------DALRLVAEVINKL----REEGKSVLIITH 162 (200)
T ss_pred cccCCHHHHHHHHHHHHH--hcCCCEEEEeCCCccCCH-------------HHHHHHHHHHHHH----HHCCCEEEEEec
Confidence 112 235778888887655420 1112233334333 345899999999
Q ss_pred CCcccccccCCCCeeeccCCceeee-eceEEEEEEEeceeec
Q 017792 194 VRAKLSTFGFGGPTEVTCGGNALKF-YASVRLNIKRIGLVKK 234 (366)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~gG~~l~~-~ad~~i~l~~~~~~~~ 234 (366)
..+. +.. +||+++.|.++.+...
T Consensus 163 ~~~~------------------~~~~~~d~i~~l~~G~i~~~ 186 (200)
T cd03217 163 YQRL------------------LDYIKPDRVHVLYDGRIVKS 186 (200)
T ss_pred CHHH------------------HHHhhCCEEEEEECCEEEEE
Confidence 7653 445 6899988887654443
No 212
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=1.3e-12 Score=122.06 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=97.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce-ecCCCCHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALSLV-- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~-- 128 (366)
+++|++++|.||||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+.. ++...++.+.+.+.
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~ 110 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE-IFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLE 110 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHH
Confidence 6799999999999999999999999998887786 6777764322 345667899998863 34444444333221
Q ss_pred -------------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 129 -------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 129 -------------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
..++.... ++...... ...+++ |++++...||++... +.
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LS~--G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~ 182 (269)
T PRK13648 111 NHAVPYDEMHRRVSEALKQVD-----MLERADYE-PNALSG--GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLL 182 (269)
T ss_pred hcCCCHHHHHHHHHHHHHHcC-----CchhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 11111111 11111111 123443 788888888877643 55
Q ss_pred HHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 176 KLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 176 ~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
++...+.+ .++|||+++|.... +.. ||+++.|.++.+...+
T Consensus 183 ~~L~~~~~~~~~tiiivtH~~~~------------------~~~-~d~i~~l~~G~i~~~g 224 (269)
T PRK13648 183 DLVRKVKSEHNITIISITHDLSE------------------AME-ADHVIVMNKGTVYKEG 224 (269)
T ss_pred HHHHHHHHhcCCEEEEEecCchH------------------Hhc-CCEEEEEECCEEEEec
Confidence 55555444 48999999997653 333 8999999877654443
No 213
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=7.2e-13 Score=124.27 Aligned_cols=160 Identities=20% Similarity=0.247 Sum_probs=100.9
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC----C-HHHHhhcccccCcce-ecCCCCHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D-PSLAETIGVKTENLL-LAQPDCGEQALSL 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~-~~~~~~~e~~l~~ 127 (366)
-+.+|++++|+|+||||||||++.+++.+.+..|. ++++++... . ..+.+.+++.+|+.. ...+.++.+.+.+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~ 102 (275)
T PRK13639 24 KAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGE-VLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAF 102 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccE-EEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHH
Confidence 37799999999999999999999999988887787 566665432 1 235677999999862 2223466665543
Q ss_pred HHHHHhc----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
....... .-.+.+-+....... ..++++ |++|+...||+++.. +..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LS~--Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 179 (275)
T PRK13639 103 GPLNLGLSKEEVEKRVKEALKAVGMEGFENKP-PHHLSG--GQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKL 179 (275)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 2110000 000111111111111 233444 777777777777654 5555
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+.+.+.|||+++|..+. +..+||+++.|.++.++..+
T Consensus 180 l~~l~~~~~til~vtH~~~~------------------~~~~~d~i~~l~~G~i~~~g 219 (275)
T PRK13639 180 LYDLNKEGITIIISTHDVDL------------------VPVYADKVYVMSDGKIIKEG 219 (275)
T ss_pred HHHHHHCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 55555569999999997664 45578999999877655443
No 214
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.38 E-value=2.9e-13 Score=121.12 Aligned_cols=162 Identities=17% Similarity=0.160 Sum_probs=105.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CHHHHhhcc--cccCcceecCCCCHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIG--VKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~~~~~~ig--~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
-+.+|++++|+||||+|||||.+.+.+.+.+.+|. +++.+++.. .+....+.| -.+|++.+++..|+-+++....
T Consensus 26 ~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~-v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~ 104 (250)
T COG0411 26 EVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGT-VIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGA 104 (250)
T ss_pred EEcCCeEEEEECCCCCCceeeeeeecccccCCCce-EEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHh
Confidence 47899999999999999999999999999999897 455655432 233333444 4688888888888776654431
Q ss_pred HHH-------hc---------------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------
Q 017792 130 TLI-------RS---------------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------- 173 (366)
Q Consensus 130 ~~~-------~~---------------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------- 173 (366)
... .. .-...+-++...... ...++. |++.+...||+|+..
T Consensus 105 ~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~-A~~Lsy--G~qR~LEIArALa~~P~lLLLDEPaAGln 181 (250)
T COG0411 105 HARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRP-AGNLSY--GQQRRLEIARALATQPKLLLLDEPAAGLN 181 (250)
T ss_pred hhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcch-hhcCCh--hHhHHHHHHHHHhcCCCEEEecCccCCCC
Confidence 100 00 000111111111111 122222 555555566665443
Q ss_pred ------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 174 ------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 174 ------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
+..+...+++ .|+||++|.|.++- +..+||+++.|..++.+.+|++
T Consensus 182 ~~e~~~l~~~i~~i~~~~g~tillIEHdM~~------------------Vm~l~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 182 PEETEELAELIRELRDRGGVTILLIEHDMKL------------------VMGLADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEEeccHH------------------HhhhccEEEeccCCcCcccCCH
Confidence 5555555555 67999999997764 6678999999999998888865
No 215
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=8.3e-13 Score=123.58 Aligned_cols=159 Identities=10% Similarity=0.063 Sum_probs=99.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC----C-HHHHhhcccccCccee-cCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLL-AQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~-~~~~~~e~~l~~~ 128 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++.... . ..+.+.+++.+|+... ....++.+.+...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~ 102 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGA-VLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFS 102 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccE-EEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHH
Confidence 6799999999999999999999999988888887 566665431 1 2345679999987642 2233455444321
Q ss_pred HHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
....... -...+-++...... ...+++ |++|+...||+++.. +..+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l 179 (271)
T PRK13638 103 LRNLGVPEAEITRRVDEALTLVDAQHFRHQP-IQCLSH--GQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAII 179 (271)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHhHhcCC-chhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 1100000 00011111111111 234444 888888888887654 55555
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
..+.+.+.|||+++|.... +..+||+++.|.++.++..+
T Consensus 180 ~~~~~~g~tii~vtH~~~~------------------~~~~~d~i~~l~~G~i~~~g 218 (271)
T PRK13638 180 RRIVAQGNHVIISSHDIDL------------------IYEISDAVYVLRQGQILTHG 218 (271)
T ss_pred HHHHHCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 5555568999999997654 45678999999877654433
No 216
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.38 E-value=2.5e-12 Score=120.06 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=99.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
|++|++++|+|+||||||||++.+++.+.+ ..|. ++++++... + ..+.+.+++.+|+..++. .++.+.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 119 (267)
T PRK14235 42 IPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGK-ITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP-KSIYEN 119 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceE-EEECCEECcccccchHHHhhceEEEecCCCCCC-CcHHHH
Confidence 779999999999999999999999998864 5666 667765432 1 234567899999876665 377776
Q ss_pred HHHHHHHHh----cCC--------ceEEEEec-ccccC--CCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 125 LSLVDTLIR----SGS--------VDVVVVDS-VAALV--PKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 125 l~~~~~~~~----~~~--------~~lvviDs-l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
+.+...... ... ...+-++. +.... +...+++ |++|+...+|+++..
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~ 197 (267)
T PRK14235 120 VAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSG--GQQQRLCIARAIAVSPEVILMDEPCSALDPI 197 (267)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHH
Confidence 653221100 000 00000110 00011 1233444 888888888887643
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+.+ +.|||+++|..+. +..+||+++.|.++.+...
T Consensus 198 ~~~~l~~~L~~l~~-~~tiiivtH~~~~------------------~~~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 198 ATAKVEELIDELRQ-NYTIVIVTHSMQQ------------------AARVSQRTAFFHLGNLVEV 243 (267)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEEcCHHH------------------HHhhCCEEEEEECCEEEEe
Confidence 5555555544 6899999997654 5567899988887655443
No 217
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=1.3e-12 Score=123.07 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=100.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC---CeEEEEeCCCCCC---HHHHhhcccccCcce-ecCCCCHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG---GYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALS 126 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g---g~vl~id~e~~~~---~~~~~~ig~~~~~~~-~~~~~~~e~~l~ 126 (366)
-+++|++++|+|+||||||||++.+++.+.+.. |. ++++++.... ..+...+|+.+|+.. .+...++.+.+.
T Consensus 29 ~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~-i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~ 107 (282)
T PRK13640 29 SIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSK-ITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVA 107 (282)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcE-EEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHH
Confidence 377999999999999999999999999987765 54 6777765432 244567899998863 344567766654
Q ss_pred HHHHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 127 LVDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 127 ~~~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
+........ -...+-+....... ...+++ |++++...+|+++.. +..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LS~--G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~ 184 (282)
T PRK13640 108 FGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE-PANLSG--GQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK 184 (282)
T ss_pred hhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 321110000 00011111111111 133443 788888888877654 555
Q ss_pred HHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 177 LSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 177 L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+...+.+ .|+|||+++|..+. +. .||+++.|.++.++..+
T Consensus 185 ~l~~l~~~~g~tvli~tH~~~~------------------~~-~~d~i~~l~~G~i~~~g 225 (282)
T PRK13640 185 LIRKLKKKNNLTVISITHDIDE------------------AN-MADQVLVLDDGKLLAQG 225 (282)
T ss_pred HHHHHHHhcCCEEEEEecCHHH------------------HH-hCCEEEEEECCEEEEeC
Confidence 5555444 58999999997654 43 58999999877654443
No 218
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.38 E-value=2.5e-12 Score=119.83 Aligned_cols=161 Identities=21% Similarity=0.255 Sum_probs=104.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC--H-----HHHhhcccccCcceec-CC-C
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD--P-----SLAETIGVKTENLLLA-QP-D 119 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~--~-----~~~~~ig~~~~~~~~~-~~-~ 119 (366)
-+.+|++++|+|++||||||+++.+++.+.. .+|. +++++++.+. . .+.+.+++.+|++.-. +| .
T Consensus 27 ~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~-i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~ 105 (316)
T COG0444 27 ELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGE-ILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVM 105 (316)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeE-EEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChh
Confidence 3779999999999999999999999999973 2454 5666665433 2 2345789999986422 22 2
Q ss_pred CH-HHHHHHHHHHHhc-----------CCceEEEEec---ccccCCCCccCCccchhhHHHHHHHHHHH-----------
Q 017792 120 CG-EQALSLVDTLIRS-----------GSVDVVVVDS---VAALVPKGELDGEMGDAHMAMQARLMSQA----------- 173 (366)
Q Consensus 120 ~~-e~~l~~~~~~~~~-----------~~~~lvviDs---l~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------- 173 (366)
++ +++.+.+...... .-...|-++. +...+| .+++| |..|+.++|-+++..
T Consensus 106 ~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP-helSG--GMrQRV~IAmala~~P~LlIADEPTT 182 (316)
T COG0444 106 TIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP-HELSG--GMRQRVMIAMALALNPKLLIADEPTT 182 (316)
T ss_pred hHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC-cccCC--cHHHHHHHHHHHhCCCCEEEeCCCcc
Confidence 22 2333332211000 0012222332 344553 66776 888888888776543
Q ss_pred ---------HHHHHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 ---------LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 ---------L~~L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.+|.+.+ ++.|+++|+|||.... +..+||++..|..++++..++
T Consensus 183 ALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v------------------va~~aDri~VMYaG~iVE~g~ 237 (316)
T COG0444 183 ALDVTVQAQILDLLKELQREKGTALILITHDLGV------------------VAEIADRVAVMYAGRIVEEGP 237 (316)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhcceEEEEECcEEEEeCC
Confidence 33334444 3589999999997653 677899999999988877765
No 219
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.37 E-value=1.7e-12 Score=132.07 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=101.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CH-HH-HhhcccccCcceecCCCCHHHHHHHH-
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP-SL-AETIGVKTENLLLAQPDCGEQALSLV- 128 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~-~~-~~~ig~~~~~~~~~~~~~~e~~l~~~- 128 (366)
-+++|++++|+||||||||||++.+++.+.+..|. +++++.... .. .+ ...+++.+|+..++...++.+.+.+.
T Consensus 33 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 111 (510)
T PRK15439 33 TLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGT-LEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGL 111 (510)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccc
Confidence 37799999999999999999999999988887786 566654332 22 22 24589999988777777887765431
Q ss_pred ----------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 ----------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ----------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
..++.... ++...... ...+++ |++|+...||+++.. +..+.
T Consensus 112 ~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l 183 (510)
T PRK15439 112 PKRQASMQKMKQLLAALG-----CQLDLDSS-AGSLEV--ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRI 183 (510)
T ss_pred ccchHHHHHHHHHHHHcC-----CCccccCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 11111111 11111111 234544 888888888887654 55555
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.+.+.|.|||+++|..+. +..+||+++.|+++.++.
T Consensus 184 ~~~~~~g~tiiivtHd~~~------------------~~~~~d~i~~l~~G~i~~ 220 (510)
T PRK15439 184 RELLAQGVGIVFISHKLPE------------------IRQLADRISVMRDGTIAL 220 (510)
T ss_pred HHHHHCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 5555679999999998765 344567777776665544
No 220
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=2.3e-12 Score=117.89 Aligned_cols=139 Identities=18% Similarity=0.203 Sum_probs=89.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-H---H-HhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S---L-AETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~---~-~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++.+.+..|. ++++++.... . . + .+.+++.+|+..++...++.+.+.+
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 110 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGD-VIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAM 110 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHH
Confidence 6799999999999999999999999988877776 5677654322 1 1 2 2569999999877777788777654
Q ss_pred HHHHHh-------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~-------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
...... . .-...+-++....-. ...+++ |++|+...+|+++.. +.++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSg--G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 187 (233)
T PRK11629 111 PLLIGKKKPAEINSRALEMLAAVGLEHRANHR-PSELSG--GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL 187 (233)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 211100 0 000111111111111 133444 788888888877653 5555
Q ss_pred HHHhhh-cCcEEEEEecCCcc
Q 017792 178 SHSLSL-SQTILIFINQVRAK 197 (366)
Q Consensus 178 ~~~l~~-~~~tVI~i~h~~~~ 197 (366)
...+++ .|+|||+++|..+.
T Consensus 188 l~~~~~~~g~tvii~sH~~~~ 208 (233)
T PRK11629 188 LGELNRLQGTAFLVVTHDLQL 208 (233)
T ss_pred HHHHHHhCCCEEEEEeCCHHH
Confidence 555543 58999999997764
No 221
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.37 E-value=2.7e-12 Score=116.67 Aligned_cols=149 Identities=19% Similarity=0.208 Sum_probs=94.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceec--CCCCHHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLA--QPDCGEQALSLV---- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~--~~~~~e~~l~~~---- 128 (366)
+.+|++++|+|+||||||||++.+++...+.+|. ++++++... ...+.++|.+|+..+. .+.++.+.+...
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGT-VKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 6799999999999999999999999988888887 567765432 2345689988876542 224555543221
Q ss_pred ---------------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 129 ---------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 129 ---------------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
..++.... ++...... ...+++ |++|+...+|++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVG-----LTELADRP-VGELSG--GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhC-----CchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 11111111 11111111 123433 777777777776653
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.++...+++.+.|||+++|.... +..+||+++.+ +++++.
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~~------------------~~~~~d~i~~l-~G~i~~ 192 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLAQ------------------AMATCDRVVLL-NGRVIA 192 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEE-CCEEEe
Confidence 555565555569999999997664 55567888777 455443
No 222
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.37 E-value=1.9e-12 Score=117.95 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=96.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-H----HHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S----LAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~----~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++..... . . +.+.+++.+|+..++...++.+.+..
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~ 111 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGE-VSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVEL 111 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCee-EEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHH
Confidence 6799999999999999999999999988888887 5666653321 1 1 13468999998877776677766543
Q ss_pred HHHHHh-------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~-------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
...... . .-...+-++...... ...+++ |++|+...+|+++.. +..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 188 (228)
T PRK10584 112 PALLRGESSRQSRNGAKALLEQLGLGKRLDHL-PAQLSG--GEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188 (228)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 211000 0 000111111111111 133443 788888888877654 5555
Q ss_pred HHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEec
Q 017792 178 SHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 230 (366)
Q Consensus 178 ~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~ 230 (366)
...+. +.+.|||+++|.... +.. ||+++.|.++.
T Consensus 189 l~~~~~~~~~tii~~sH~~~~------------------~~~-~d~i~~l~~g~ 223 (228)
T PRK10584 189 LFSLNREHGTTLILVTHDLQL------------------AAR-CDRRLRLVNGQ 223 (228)
T ss_pred HHHHHHhcCCEEEEEecCHHH------------------HHh-CCEEEEEECCE
Confidence 54443 458999999997653 333 78888887654
No 223
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.36 E-value=2.1e-12 Score=118.31 Aligned_cols=156 Identities=22% Similarity=0.306 Sum_probs=99.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+|+||||||||++.+++.+.+..|. ++++++... + ..+.+.+++.+|+..++. .++.+.+....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~ 102 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR-VLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADPG 102 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCCC
Confidence 6799999999999999999999999999888887 556665321 1 234567899999876653 46666554311
Q ss_pred -------HHHhcCCc-eE---E--EEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 130 -------TLIRSGSV-DV---V--VVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 130 -------~~~~~~~~-~l---v--viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
........ .+ + -++....- +...+++ |++|+...+|+++.. +.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~LSg--G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 179 (237)
T cd03252 103 MSMERVIEAAKLAGAHDFISELPEGYDTIVGE-QGAGLSG--GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMR 179 (237)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCcccccchhhc-CCCcCCH--HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 00000000 00 0 00111001 1234444 888888888887754 555
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+...+.+ ++|||+++|..+. +. .||.++.|.++.+...+
T Consensus 180 ~l~~~~~-~~tiii~sH~~~~------------------~~-~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 180 NMHDICA-GRTVIIIAHRLST------------------VK-NADRIIVMEKGRIVEQG 218 (237)
T ss_pred HHHHhcC-CCEEEEEeCCHHH------------------HH-hCCEEEEEECCEEEEEc
Confidence 5555543 8999999997654 43 48888888877654433
No 224
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.36 E-value=1.6e-12 Score=131.94 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=101.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-H-HHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S-LAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~-~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+.+|++++|+||||||||||++.+++.+.+..|. +++++..... . . +.+.+++.+|+..++...++.+.+.+...
T Consensus 27 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 105 (501)
T PRK10762 27 VYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS-ILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGRE 105 (501)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccc
Confidence 6799999999999999999999999998888887 5666544321 1 2 24568999998877777777776643211
Q ss_pred HHh---cC-----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 131 LIR---SG-----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 131 ~~~---~~-----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
... .. -...+-+.....- +...+++ |++|+...||+++.. +.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 182 (501)
T PRK10762 106 FVNRFGRIDWKKMYAEADKLLARLNLRFSSDK-LVGELSI--GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR 182 (501)
T ss_pred cccccCccCHHHHHHHHHHHHHHcCCCCCccC-chhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHH
Confidence 000 00 0000111111111 1234444 888888888887654 555
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+...+++.+.|||+++|..+. +..+||+++.|+++.++.
T Consensus 183 ~l~~l~~~~~tvii~sHd~~~------------------~~~~~d~i~~l~~G~i~~ 221 (501)
T PRK10762 183 VIRELKSQGRGIVYISHRLKE------------------IFEICDDVTVFRDGQFIA 221 (501)
T ss_pred HHHHHHHCCCEEEEEeCCHHH------------------HHHhCCEEEEEeCCEEEE
Confidence 666666679999999998765 455677777777765543
No 225
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=1.8e-12 Score=121.99 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=100.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC----C-HHHHhhcccccCcce-ecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D-PSLAETIGVKTENLL-LAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~ 128 (366)
|++|++++|+|+||||||||++.+++.+.+..|. +++++.... . ..+...+||.+|+.. ...+.++.+.+...
T Consensus 29 i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~-i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~ 107 (283)
T PRK13636 29 IKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGR-ILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFG 107 (283)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccE-EEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhH
Confidence 6799999999999999999999999998888887 567765432 1 245677999999863 22334666655432
Q ss_pred HHHHh--c--------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIR--S--------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~--~--------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
..... . .-...+-+.....-. ...+++ |++|+...||+++.. +..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS~--G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l 184 (283)
T PRK13636 108 AVNLKLPEDEVRKRVDNALKRTGIEHLKDKP-THCLSF--GQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLL 184 (283)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 11000 0 000011111111111 233443 777877888877654 44545
Q ss_pred HHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 179 HSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 179 ~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
..+.+ .|.|||+++|..+. +..+||+++.|.++.++..+
T Consensus 185 ~~l~~~~g~tillvsH~~~~------------------~~~~~dri~~l~~G~i~~~g 224 (283)
T PRK13636 185 VEMQKELGLTIIIATHDIDI------------------VPLYCDNVFVMKEGRVILQG 224 (283)
T ss_pred HHHHHhCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 44444 48999999997765 55679999999887665544
No 226
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=1.6e-12 Score=122.26 Aligned_cols=159 Identities=19% Similarity=0.176 Sum_probs=99.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcce-ecCCCCHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLL-LAQPDCGEQALSLV 128 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~ 128 (366)
-|++|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.+|+.+|++. .....++.+.+.+.
T Consensus 32 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~ 110 (280)
T PRK13633 32 EVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGK-VYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG 110 (280)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhh
Confidence 37799999999999999999999999998888786 6677665432 234667999998763 12234555554332
Q ss_pred HHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
....... -...+-+.....-. ...+++ |++|+...||+++.. +..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l 187 (280)
T PRK13633 111 PENLGIPPEEIRERVDESLKKVGMYEYRRHA-PHLLSG--GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTI 187 (280)
T ss_pred HhhcCCCHHHHHHHHHHHHHHCCCHhHhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 1100000 00000011111111 234444 778888888877654 55555
Q ss_pred HHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 179 HSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 179 ~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
..+.+ .++|||+++|..+. +.. ||+++.|.++.++..+
T Consensus 188 ~~l~~~~g~tillvtH~~~~------------------~~~-~d~v~~l~~G~i~~~g 226 (280)
T PRK13633 188 KELNKKYGITIILITHYMEE------------------AVE-ADRIIVMDSGKVVMEG 226 (280)
T ss_pred HHHHHhcCCEEEEEecChHH------------------Hhc-CCEEEEEECCEEEEec
Confidence 55544 59999999997764 444 8999999877655444
No 227
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.36 E-value=2e-12 Score=128.69 Aligned_cols=154 Identities=19% Similarity=0.229 Sum_probs=102.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----CCeEEEEeCCCCCC-------HHHHhhcccccCcce-ecCC-CCH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFIDAEHALD-------PSLAETIGVKTENLL-LAQP-DCG 121 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~----gg~vl~id~e~~~~-------~~~~~~ig~~~~~~~-~~~~-~~~ 121 (366)
+.+|++++|+|++||||||+++.+++.+... +|.+ ++++.+... ..+.+++++.+|++. .++| .++
T Consensus 32 v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I-~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tI 110 (539)
T COG1123 32 VEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV-ILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTI 110 (539)
T ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEE-EECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhH
Confidence 6699999999999999999999999998876 5664 445543221 124567899999864 2333 333
Q ss_pred HHH----------------HHHHHHHHhcCCceEEEEeccc--ccCCCCccCCccchhhHHHHHHHHHHH----------
Q 017792 122 EQA----------------LSLVDTLIRSGSVDVVVVDSVA--ALVPKGELDGEMGDAHMAMQARLMSQA---------- 173 (366)
Q Consensus 122 e~~----------------l~~~~~~~~~~~~~lvviDsl~--~l~~~~~l~~~~g~~~~~~~ar~l~~~---------- 173 (366)
.+. ...+.++++. +-+..-. ..+| .+++| |++|+.+.|++++..
T Consensus 111 g~Qi~E~~~~h~~~~~~ea~~~a~elL~~-----Vgl~~~~~~~~yP-heLSG--G~rQRv~iAmALa~~P~LLIaDEPT 182 (539)
T COG1123 111 GDQIREALRLHGKGSRAEARKRAVELLEQ-----VGLPDPERRDRYP-HQLSG--GMRQRVMIAMALALKPKLLIADEPT 182 (539)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH-----cCCCChhhhccCC-cccCc--hHHHHHHHHHHHhCCCCEEEECCCc
Confidence 222 2222222221 1111111 2343 66777 899999999887764
Q ss_pred ----------HHHHHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ----------LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ----------L~~L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+.+.+ ++.|+++|+|||.... ++++||+++.|++++++..|
T Consensus 183 TaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V------------------va~~aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 183 TALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV------------------VAELADRVVVMYKGEIVETG 237 (539)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH------------------HHHhcCeEEEEECCEEEEec
Confidence 33333333 5789999999997654 78899999999999877755
No 228
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=4.1e-12 Score=118.04 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=99.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+ ..|. ++++++... . ..+.+.+++.+|+..++.. ++.+.
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~en 112 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGE-MNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDN 112 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceE-EEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHH
Confidence 779999999999999999999999998762 3565 566765432 1 2445679999998776653 77666
Q ss_pred HHHHHHHHhcCC-----------ceEEEEec-ccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVVDS-VAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvviDs-l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.+......... ...+-++. +.... +...+++ |++|+...+|++...
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~--Gq~qrv~laral~~~p~llllDEPt~~LD~~~ 190 (259)
T PRK14274 113 VAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSG--GQQQRLCIARALATNPDVLLMDEPTSALDPVS 190 (259)
T ss_pred HHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 543221110000 00000100 00011 1233443 888888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.++...+++ +.|||+++|.... +..+||+++.|+++++...+
T Consensus 191 ~~~l~~~l~~~~~-~~tiiivtH~~~~------------------~~~~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 191 TRKIEELILKLKE-KYTIVIVTHNMQQ------------------AARVSDQTAFFYMGELVECN 236 (259)
T ss_pred HHHHHHHHHHHhc-CCEEEEEEcCHHH------------------HHHhCCEEEEEECCEEEEEC
Confidence 5555555544 7899999997654 55678999999877654443
No 229
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=2.9e-12 Score=117.12 Aligned_cols=155 Identities=18% Similarity=0.274 Sum_probs=98.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVDT- 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~- 130 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++... . ..+.+.+++.+|+..++. .++.+.+.....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~ 102 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGR-ILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG 102 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccCCCCE-EEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC
Confidence 6799999999999999999999999998888887 566665332 1 345667899998876654 466655432100
Q ss_pred ----HHhcCCceEEEEec--------ccccC--CCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 131 ----LIRSGSVDVVVVDS--------VAALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 131 ----~~~~~~~~lvviDs--------l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
.+.. ......++. +.... +...+++ |++|+...||+++.. +.+
T Consensus 103 ~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~--G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~ 179 (234)
T cd03251 103 ATREEVEE-AARAANAHEFIMELPEGYDTVIGERGVKLSG--GQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179 (234)
T ss_pred CCHHHHHH-HHHHcCcHHHHHhcccCcceeeccCCCcCCH--HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 0000 000000011 11111 1233444 888888888887764 555
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+...+.+ +.+||+++|.... +.. ||.++.|+++.+...
T Consensus 180 ~l~~~~~-~~tii~~sh~~~~------------------~~~-~d~v~~l~~G~i~~~ 217 (234)
T cd03251 180 ALERLMK-NRTTFVIAHRLST------------------IEN-ADRIVVLEDGKIVER 217 (234)
T ss_pred HHHHhcC-CCEEEEEecCHHH------------------Hhh-CCEEEEecCCeEeee
Confidence 5555543 8999999997754 433 899999987765433
No 230
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.36 E-value=4.2e-12 Score=115.57 Aligned_cols=149 Identities=15% Similarity=0.210 Sum_probs=95.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++... + ..+...+++.+|+..++. .++.+.+......
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~ 107 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLISPTSGT-LLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQI 107 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCe-EEECCEEcCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhh
Confidence 7799999999999999999999999988887887 566665322 1 235567899999877664 4777765432111
Q ss_pred HhcC--------CceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 132 IRSG--------SVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 132 ~~~~--------~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
.... -.+.+-++ .+.... ...+++ |++++...+|+++.. +..+...+.
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 184 (225)
T PRK10247 108 RNQQPDPAIFLDDLERFALPDTILTKN-IAELSG--GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYV 184 (225)
T ss_pred cCCChHHHHHHHHHHHcCCChHHhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 0000 00011111 011111 233443 788888888887654 445444443
Q ss_pred -hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 183 -LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 183 -~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
+.+.|||+++|..+. +. .||+++.|+
T Consensus 185 ~~~~~tvii~sh~~~~------------------~~-~~d~i~~l~ 211 (225)
T PRK10247 185 REQNIAVLWVTHDKDE------------------IN-HADKVITLQ 211 (225)
T ss_pred HhcCCEEEEEECChHH------------------HH-hCCEEEEEe
Confidence 358999999997654 44 489888885
No 231
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.36 E-value=2.1e-12 Score=120.62 Aligned_cols=157 Identities=20% Similarity=0.160 Sum_probs=97.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce--ecCCCCHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL--LAQPDCGEQALSLV 128 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~--~~~~~~~e~~l~~~ 128 (366)
-+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+.. +....++.+.+...
T Consensus 35 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 113 (267)
T PRK15112 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGE-LLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFP 113 (267)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCE-EEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHH
Confidence 37799999999999999999999999998888887 4566544321 233456899998763 33334555544321
Q ss_pred HHHHhc-C----------CceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 129 DTLIRS-G----------SVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 129 ~~~~~~-~----------~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
...... . -...+-++ ...... ...+++ |++|+...||+++.. +..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~--G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 190 (267)
T PRK15112 114 LRLNTDLEPEQREKQIIETLRQVGLLPDHASYY-PHMLAP--GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN 190 (267)
T ss_pred HHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC-chhcCH--HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHH
Confidence 110000 0 00011111 111111 133443 788888888887654 555
Q ss_pred HHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 177 LSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 177 L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+...+.+ .+.|||+++|..+. +..+||+++.|.++.+.
T Consensus 191 ~l~~~~~~~g~tviivsH~~~~------------------~~~~~d~i~~l~~G~i~ 229 (267)
T PRK15112 191 LMLELQEKQGISYIYVTQHLGM------------------MKHISDQVLVMHQGEVV 229 (267)
T ss_pred HHHHHHHHcCcEEEEEeCCHHH------------------HHHhcCEEEEEECCEEE
Confidence 5554444 58999999997654 55678999888876543
No 232
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.35 E-value=3e-12 Score=108.57 Aligned_cols=149 Identities=20% Similarity=0.251 Sum_probs=100.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC--CC-----HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LD-----PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~--~~-----~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+.+|+.+.|+||+|||||||+..++++-.+.+|.|. +.+... .+ ..+.+++|+++|.+.+.+..+..+++..
T Consensus 33 v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~-l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~l 111 (228)
T COG4181 33 VKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVR-LLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL 111 (228)
T ss_pred ecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEE-EcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccc
Confidence 679999999999999999998888888788888754 444332 22 2456789999999999888776665432
Q ss_pred ---------------HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 128 ---------------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 128 ---------------~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
...++..-. +-.-...+| .++++ |++|+..+||+++..
T Consensus 112 PleL~ge~~~~~~~~A~~lL~~vG-----Lg~Rl~HyP-~qLSG--GEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~ 183 (228)
T COG4181 112 PLELRGESSADSRAGAKALLEAVG-----LGKRLTHYP-AQLSG--GEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183 (228)
T ss_pred hhhhcCCccccHHHHHHHHHHHhC-----cccccccCc-cccCc--hHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHH
Confidence 111111100 111112232 45665 889999999887543
Q ss_pred --HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 174 --LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 174 --L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
..-|....++.|.|+|+++|... ++.-|++++.|+.+++
T Consensus 184 ~iaDLlF~lnre~G~TlVlVTHD~~-------------------LA~Rc~R~~r~~~G~l 224 (228)
T COG4181 184 KIADLLFALNRERGTTLVLVTHDPQ-------------------LAARCDRQLRLRSGRL 224 (228)
T ss_pred HHHHHHHHHhhhcCceEEEEeCCHH-------------------HHHhhhheeeeeccee
Confidence 12222333678999999999543 6667899999987754
No 233
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=2.3e-12 Score=120.56 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=98.9
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce-ecCCCCHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALSLVD 129 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~ 129 (366)
-+++|++++|+||||||||||++.+++...+..|. +++++..... ..+.+.++|.+|+.. .+...++.+.+....
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~ 109 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE-IKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGL 109 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHH
Confidence 47799999999999999999999999998887786 5666654322 245667899998863 344457766654321
Q ss_pred HHHhcC--C--------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 130 TLIRSG--S--------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 130 ~~~~~~--~--------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
...... . ...+-++....-. ...+++ |++|+...+|+++.. +..+..
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~ 186 (271)
T PRK13632 110 ENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-PQNLSG--GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMV 186 (271)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 110000 0 0111111111111 133444 788888888877654 445555
Q ss_pred Hhhhc-CcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 180 SLSLS-QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 180 ~l~~~-~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
.+++. +.|||+++|..+. +. .||+++.|.++.+..
T Consensus 187 ~~~~~~~~tiii~sH~~~~------------------~~-~~d~v~~l~~G~i~~ 222 (271)
T PRK13632 187 DLRKTRKKTLISITHDMDE------------------AI-LADKVIVFSEGKLIA 222 (271)
T ss_pred HHHHhcCcEEEEEEechhH------------------Hh-hCCEEEEEECCEEEE
Confidence 54444 5999999997653 33 589998888775443
No 234
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=3.7e-12 Score=117.88 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=98.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~---~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
|++|++++|+|+||||||||++.+++.+. + ..|. +++++..... ..+.+.+++.+|+..++...++.+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~en 105 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGK-ILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDN 105 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceE-EEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHH
Confidence 67999999999999999999999999875 2 3565 5677654321 2345678999998877776777766
Q ss_pred HHHHHHHHhcCC-----------ceEEEEec-ccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVVDS-VAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvviDs-l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+........... .+.+-++. +.... +...+++ |++|+...||+++..
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--G~~qrl~laral~~~p~llllDEP~~gLD~~~ 183 (252)
T PRK14256 106 VIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSG--GQQQRLCIARTIAVKPEVILMDEPASALDPIS 183 (252)
T ss_pred HHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 543211100000 00011110 00011 1233444 888888888887643
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.++...+.+ +.|||+++|..+. +..+||+++.|..+.+..
T Consensus 184 ~~~l~~~l~~~~~-~~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14256 184 TLKIEELIEELKE-KYTIIIVTHNMQQ------------------AARVSDYTAFFYMGDLVE 227 (252)
T ss_pred HHHHHHHHHHHHh-CCcEEEEECCHHH------------------HHhhCCEEEEEECCEEEE
Confidence 5555555544 6899999997654 456789888888765433
No 235
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.35 E-value=2.8e-12 Score=118.48 Aligned_cols=152 Identities=17% Similarity=0.140 Sum_probs=98.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+|+||||||||++.+++... ..|. ++++++.... ..+.+.+++.+|+..+....++.+.+....
T Consensus 19 i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~-i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~ 96 (248)
T PRK03695 19 VRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGS-IQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPD 96 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeE-EEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCcc
Confidence 67999999999999999999999998764 4565 6677654322 234456889888765555556665544321
Q ss_pred ------------HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHH-------H-----------------
Q 017792 130 ------------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ-------A----------------- 173 (366)
Q Consensus 130 ------------~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~-------~----------------- 173 (366)
.++... -++...... ...+++ |++|+...+|+++. .
T Consensus 97 ~~~~~~~~~~~~~~l~~~-----~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~ 168 (248)
T PRK03695 97 KTRTEAVASALNEVAEAL-----GLDDKLGRS-VNQLSG--GEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ 168 (248)
T ss_pred CCCcHHHHHHHHHHHHHc-----CCHhHhcCC-cccCCH--HHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHH
Confidence 111110 011111111 133443 78888888888873 1
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+++.+.|||+++|..+. +..+||+++.|+++.++..
T Consensus 169 ~~~l~~~L~~~~~~~~tvi~~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 214 (248)
T PRK03695 169 QAALDRLLSELCQQGIAVVMSSHDLNH------------------TLRHADRVWLLKQGKLLAS 214 (248)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 555555555568999999997764 5567899999987765443
No 236
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.35 E-value=1.3e-12 Score=120.53 Aligned_cols=145 Identities=16% Similarity=0.227 Sum_probs=92.6
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
|=+.+|++++|+|+||||||||++.+++...+..|. +++++. .+++.+|++......++.+++.......
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~-i~~~g~---------~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 89 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGD-IEIELD---------TVSYKPQYIKADYEGTVRDLLSSITKDF 89 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCe-EEECCc---------eEEEecccccCCCCCCHHHHHHHHhhhc
Confidence 458899999999999999999999999988888786 455542 5778888776555567777654321110
Q ss_pred hcC------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-hcC
Q 017792 133 RSG------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS-LSQ 185 (366)
Q Consensus 133 ~~~------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~-~~~ 185 (366)
... -...+-++....-. ...+++ |++|+...|++++.. +..+...+. +.+
T Consensus 90 ~~~~~~~~~~l~~l~l~~~~~~~-~~~LSg--Ge~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 166 (246)
T cd03237 90 YTHPYFKTEIAKPLQIEQILDRE-VPELSG--GELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE 166 (246)
T ss_pred cccHHHHHHHHHHcCCHHHhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 000 00011111111111 234444 778888888777654 444444443 358
Q ss_pred cEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 186 TILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 186 ~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
+|||+++|.... +..+||+++.|..
T Consensus 167 ~tiiivsHd~~~------------------~~~~~d~i~~l~~ 191 (246)
T cd03237 167 KTAFVVEHDIIM------------------IDYLADRLIVFEG 191 (246)
T ss_pred CEEEEEeCCHHH------------------HHHhCCEEEEEcC
Confidence 999999997654 5567888888754
No 237
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=1.6e-12 Score=121.98 Aligned_cols=157 Identities=20% Similarity=0.146 Sum_probs=100.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce-ecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~~ 130 (366)
+.+|++++|+|+||||||||+..+++...+..|. ++++++.... ..+...+|+.+|+.. .+...++.+.+.....
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~ 108 (277)
T PRK13642 30 ITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK-VKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGME 108 (277)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCE-EEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHH
Confidence 6799999999999999999999999999888887 5666654322 245667999999863 3444566666543211
Q ss_pred HHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 131 LIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 131 ~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
..... -...+-+....... ...+++ |++|+...||+++.. +..+...
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 185 (277)
T PRK13642 109 NQGIPREEMIKRVDEALLAVNMLDFKTRE-PARLSG--GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHE 185 (277)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCHhHhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 00000 00111111111111 234444 788888888887654 5555555
Q ss_pred hhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 181 LSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 181 l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.+ .|.|||+++|.... +. .||+++.|+++.++..
T Consensus 186 l~~~~g~tiil~sH~~~~------------------~~-~~d~i~~l~~G~i~~~ 221 (277)
T PRK13642 186 IKEKYQLTVLSITHDLDE------------------AA-SSDRILVMKAGEIIKE 221 (277)
T ss_pred HHHhcCCEEEEEeCCHHH------------------HH-hCCEEEEEECCEEEEe
Confidence 544 49999999997654 33 4899999987765443
No 238
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.35 E-value=2.6e-12 Score=123.47 Aligned_cols=160 Identities=21% Similarity=0.196 Sum_probs=101.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEeCCCCCC---HHH----HhhcccccCcc--eecCCCCHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALD---PSL----AETIGVKTENL--LLAQPDCGE 122 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~---gg~vl~id~e~~~~---~~~----~~~ig~~~~~~--~~~~~~~~e 122 (366)
|.+|++++|+|+||||||||++.+++.+.+. .|. ++++++.... ..+ .+.+++.+|+. .+.+..++.
T Consensus 39 i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~-I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~ 117 (330)
T PRK09473 39 LRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGS-ATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVG 117 (330)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeE-EEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHH
Confidence 6799999999999999999999999988764 666 5667665432 222 24699999987 344445555
Q ss_pred HHHHHHHHHHhc-----------CCceEEEEecc---cccCCCCccCCccchhhHHHHHHHHHHH---------------
Q 017792 123 QALSLVDTLIRS-----------GSVDVVVVDSV---AALVPKGELDGEMGDAHMAMQARLMSQA--------------- 173 (366)
Q Consensus 123 ~~l~~~~~~~~~-----------~~~~lvviDsl---~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------- 173 (366)
+.+......... .-...+-++.. .... ..++++ |++|+...||+++..
T Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~-p~~LSg--G~~QRv~IArAL~~~P~llilDEPts~LD~ 194 (330)
T PRK09473 118 EQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMY-PHEFSG--GMRQRVMIAMALLCRPKLLIADEPTTALDV 194 (330)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCccCCH
Confidence 433211100000 00111111211 1112 245555 889999999887654
Q ss_pred -----HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 -----LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 -----L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+..+...+++ .+.|+|+++|.... +..+||+++.|+.++++..+.
T Consensus 195 ~~~~~i~~lL~~l~~~~g~til~iTHdl~~------------------~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 195 TVQAQIMTLLNELKREFNTAIIMITHDLGV------------------VAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEECC
Confidence 4455555544 59999999997654 456789999998887666553
No 239
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.35 E-value=3.3e-12 Score=118.81 Aligned_cols=158 Identities=17% Similarity=0.179 Sum_probs=98.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
-|++|++++|+|+||||||||++.+++.+. +..|. +++++.... + ..+.+.+++.+|+..++. .++.+
T Consensus 35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~ 112 (260)
T PRK10744 35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGE-ILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYD 112 (260)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceE-EEECCEEccccccchHHHhcceEEEecCCccCc-CcHHH
Confidence 378999999999999999999999999875 24565 566665432 1 244567999999876655 57766
Q ss_pred HHHHHHHHHhcCC-----------ceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 124 ALSLVDTLIRSGS-----------VDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 124 ~l~~~~~~~~~~~-----------~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
.+........... ...+-++ .+.... ....+++ |++|+...||+++..
T Consensus 113 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--Gq~qrv~laral~~~p~lllLDEPt~~LD~~ 190 (260)
T PRK10744 113 NIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSG--GQQQRLCIARGIAIRPEVLLLDEPCSALDPI 190 (260)
T ss_pred HHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCH--HHHHHHHHHHHHHCCCCEEEEcCCCccCCHH
Confidence 6543211100000 0000000 000111 1233444 888888888887654
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...++ .+.|||+++|.... +..+||+++.|+++.++..
T Consensus 191 ~~~~l~~~L~~~~-~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 191 STGRIEELITELK-QDYTVVIVTHNMQQ------------------AARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHHHHHHh-cCCeEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 445554444 37899999997654 4567899999987765443
No 240
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.35 E-value=3.8e-12 Score=110.37 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=79.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHH-------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL------- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~------- 127 (366)
+++|++++|.|+||||||||++.+++.+.+..|.+ ++++. +.+++.+|+..+. ..++.+.+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~~~--------~~i~~~~q~~~~~-~~tv~~nl~~~~~~~LS 93 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI-GMPEG--------EDLLFLPQRPYLP-LGTLREQLIYPWDDVLS 93 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCC--------ceEEEECCCCccc-cccHHHHhhccCCCCCC
Confidence 67999999999999999999999999888887874 55432 4677777776543 3455554431
Q ss_pred ---------HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccc
Q 017792 128 ---------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 198 (366)
Q Consensus 128 ---------~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~ 198 (366)
+..++ .+++++++|...+-... ...+. +..+. ++.+.|+|+++|....
T Consensus 94 ~G~~~rv~laral~--~~p~~lllDEPt~~LD~-------------~~~~~----l~~~l---~~~~~tiiivsh~~~~- 150 (166)
T cd03223 94 GGEQQRLAFARLLL--HKPKFVFLDEATSALDE-------------ESEDR----LYQLL---KELGITVISVGHRPSL- 150 (166)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEECCccccCH-------------HHHHH----HHHHH---HHhCCEEEEEeCChhH-
Confidence 22222 35677777776655410 01111 22222 2336899999997532
Q ss_pred ccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 199 STFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 199 ~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
. .+||+++.|++.
T Consensus 151 -----------------~-~~~d~i~~l~~~ 163 (166)
T cd03223 151 -----------------W-KFHDRVLDLDGE 163 (166)
T ss_pred -----------------H-hhCCEEEEEcCC
Confidence 2 368888877653
No 241
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=2.6e-12 Score=117.67 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=101.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI- 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~- 132 (366)
|.+|++++|+|+||||||||++.+++.+.+..|. +++++..... ....+.+++.+++..++...++.+.+.......
T Consensus 22 i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~-v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~ 100 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVLLETIAGFIKPDSGK-ILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRK 100 (235)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcC
Confidence 5699999999999999999999999988887776 6677654432 123467899999887777777777665322110
Q ss_pred ------hc---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh
Q 017792 133 ------RS---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL 183 (366)
Q Consensus 133 ------~~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~ 183 (366)
.. .-.+.+-+.....-. ...+++ |++++...+|++... +..+...+..
T Consensus 101 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~ 177 (235)
T cd03299 101 VDKKEIERKVLEIAEMLGIDHLLNRK-PETLSG--GEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRK 177 (235)
T ss_pred CCHHHHHHHHHHHHHHcCChhHHhcC-cccCCH--HHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence 00 000000011110101 123443 788888888877653 4444444433
Q ss_pred -cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 184 -SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 184 -~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+++|||+++|.... +..+||+++.|.++.++..
T Consensus 178 ~~~~tili~tH~~~~------------------~~~~~d~i~~l~~G~i~~~ 211 (235)
T cd03299 178 EFGVTVLHVTHDFEE------------------AWALADKVAIMLNGKLIQV 211 (235)
T ss_pred hcCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 48999999997654 5567899999987654433
No 242
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=4.6e-12 Score=116.84 Aligned_cols=157 Identities=16% Similarity=0.160 Sum_probs=99.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh---hcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~---~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+.+|++++|+|+||||||||++.+++... +..|. ++++++.... ..+.+.+++.+|+..++. .++.+.+.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~ 102 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL-VEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYA 102 (246)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceE-EEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhH
Confidence 66999999999999999999999999864 35666 5677664332 244567999999877664 5777666442
Q ss_pred HHHHhc---CC---------ceEEEEec-ccccC--CCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 129 DTLIRS---GS---------VDVVVVDS-VAALV--PKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 129 ~~~~~~---~~---------~~lvviDs-l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
...... .. .+.+-++. +.... ....+++ |++|+...||++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~ 180 (246)
T PRK14269 103 PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSG--GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGV 180 (246)
T ss_pred HhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 211000 00 00000100 00011 1123443 888888888887654
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ ++|||+++|..+. +..+||+++.|.++++...
T Consensus 181 l~~~l~~~~~-~~tiii~tH~~~~------------------~~~~~d~i~~l~~G~i~~~ 222 (246)
T PRK14269 181 IEELLKELSH-NLSMIMVTHNMQQ------------------GKRVADYTAFFHLGELIEF 222 (246)
T ss_pred HHHHHHHHhC-CCEEEEEecCHHH------------------HHhhCcEEEEEECCEEEEE
Confidence 4444544443 8999999997654 5567899999987765443
No 243
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.34 E-value=3.1e-12 Score=117.33 Aligned_cols=155 Identities=15% Similarity=0.227 Sum_probs=97.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++.... . ..+.+.+++.+|+..++. .++.+.+....
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~ 103 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE-ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPD 103 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCE-EEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCC
Confidence 6799999999999999999999999998888887 566654322 1 234566899998876553 35555443210
Q ss_pred -------HHHhcCCce----EE--EEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 130 -------TLIRSGSVD----VV--VVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 130 -------~~~~~~~~~----lv--viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
......... .+ -++...... ...+++ |++++...+|+++.. +.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~ 180 (238)
T cd03249 104 ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGER-GSQLSG--GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180 (238)
T ss_pred CCHHHHHHHHHHcChHHHHHhhccccceeeccC-CccCCH--HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 000000000 00 000000011 134444 788888888877654 555
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+...+. .+++||+++|..+. +. +||+++.|.++.+...
T Consensus 181 ~l~~~~-~g~~vi~~sh~~~~------------------~~-~~d~v~~l~~G~i~~~ 218 (238)
T cd03249 181 ALDRAM-KGRTTIVIAHRLST------------------IR-NADLIAVLQNGQVVEQ 218 (238)
T ss_pred HHHHhc-CCCEEEEEeCCHHH------------------Hh-hCCEEEEEECCEEEEe
Confidence 555555 68999999997654 44 6899999988765443
No 244
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.34 E-value=2.9e-12 Score=129.77 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=100.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++...++.+.+.+...
T Consensus 21 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 99 (491)
T PRK10982 21 VRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGS-ILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRY 99 (491)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceE-EEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccc
Confidence 6799999999999999999999999988887776 5666654321 1234568999998776666777766543210
Q ss_pred HHhc-------------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 131 LIRS-------------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 131 ~~~~-------------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
.... .-...+-++...... ...+++ |++|+...||+++.. +.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--Gq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 176 (491)
T PRK10982 100 PTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-VATLSV--SQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI 176 (491)
T ss_pred cccccccCHHHHHHHHHHHHHHcCCCCCccCc-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 0000 000001111111111 234544 888888888887754 5555
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
...+++.+.|||+++|..+. +..+||+++.|+++.++.
T Consensus 177 l~~l~~~g~tvii~tH~~~~------------------~~~~~d~i~~l~~G~i~~ 214 (491)
T PRK10982 177 IRKLKERGCGIVYISHKMEE------------------IFQLCDEITILRDGQWIA 214 (491)
T ss_pred HHHHHhCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEe
Confidence 66666679999999998765 344566666666655443
No 245
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=1.3e-12 Score=123.29 Aligned_cols=158 Identities=14% Similarity=0.146 Sum_probs=98.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC-------C-HHHHhhcccccCccee-cCCCCHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------D-PSLAETIGVKTENLLL-AQPDCGEQA 124 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~-------~-~~~~~~ig~~~~~~~~-~~~~~~e~~ 124 (366)
-+++|++++|+|+||||||||++.+++.+.+..|. +++++.... . ..+.+.+++.+|+... ..+.++.+.
T Consensus 33 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en 111 (289)
T PRK13645 33 TFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQ-TIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKD 111 (289)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHH
Confidence 37799999999999999999999999998888887 456654321 1 2345678999987531 123466665
Q ss_pred HHHHHHHHhcC----------CceEEEE-ecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 125 LSLVDTLIRSG----------SVDVVVV-DSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~----------~~~lvvi-Dsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+.+........ -...+-+ +...... ...+++ |++|+...||+++..
T Consensus 112 l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~-~~~LS~--Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~ 188 (289)
T PRK13645 112 IAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRS-PFELSG--GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEED 188 (289)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence 54322110000 0000001 0111111 233444 888888888887754
Q ss_pred HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.++...+.+ .++|||+++|..+. +..+||+++.|+++.++.
T Consensus 189 l~~~l~~~~~~~~~tiiiisH~~~~------------------~~~~~d~i~~l~~G~i~~ 231 (289)
T PRK13645 189 FINLFERLNKEYKKRIIMVTHNMDQ------------------VLRIADEVIVMHEGKVIS 231 (289)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 4455544443 58999999997654 556789999998765443
No 246
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.34 E-value=4.7e-12 Score=118.28 Aligned_cols=153 Identities=18% Similarity=0.232 Sum_probs=98.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcce--ecCCCCHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLL--LAQPDCGEQALS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~--~~~~~~~e~~l~ 126 (366)
+.+|++++|+|+||||||||++.+++...+..|. +++++..... ..+.+.+++.+|+.. +....++.+.+.
T Consensus 35 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~-i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~ 113 (268)
T PRK10419 35 LKSGETVALLGRSGCGKSTLARLLVGLESPSQGN-VSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIR 113 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHH
Confidence 6799999999999999999999999988887786 5666654322 134567999999863 444456655542
Q ss_pred HH----------------HHHHhcCCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 127 LV----------------DTLIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 127 ~~----------------~~~~~~~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
.. ..++.... ++ .+.... ...+++ |++|+...+|+++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~g-----l~~~~~~~~-~~~LS~--Ge~qrl~laral~~~p~lllLDEPt~~LD~~ 185 (268)
T PRK10419 114 EPLRHLLSLDKAERLARASEMLRAVD-----LDDSVLDKR-PPQLSG--GQLQRVCLARALAVEPKLLILDEAVSNLDLV 185 (268)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHcC-----CChhHhhCC-CccCCh--HHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence 21 11111111 11 011111 233443 888888888887654
Q ss_pred ----HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+.+ .++|||+++|.... +..+||+++.|.++.+...
T Consensus 186 ~~~~~~~~l~~~~~~~~~tiiivsH~~~~------------------i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 186 LQAGVIRLLKKLQQQFGTACLFITHDLRL------------------VERFCQRVMVMDNGQIVET 233 (268)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEECCHHH------------------HHHhCCEEEEEECCEEeee
Confidence 4455544443 58999999997764 5567899999987654433
No 247
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.34 E-value=2.9e-12 Score=130.45 Aligned_cols=156 Identities=15% Similarity=0.096 Sum_probs=98.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-H-HHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S-LAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~-~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... . . +.+.+++.+|+..++...++.+.+.....
T Consensus 28 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 106 (510)
T PRK09700 28 VYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGT-ITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRH 106 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccE-EEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccc
Confidence 6799999999999999999999999998887787 5666554322 1 1 23468999998777666677666543110
Q ss_pred H---HhcC--------------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 131 L---IRSG--------------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 131 ~---~~~~--------------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
. .... -...+-++....- +...+++ |++|+...||+++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSg--G~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~ 183 (510)
T PRK09700 107 LTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDE-KVANLSI--SHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDY 183 (510)
T ss_pred cccccccccccCHHHHHHHHHHHHHHcCCCCCccc-chhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Confidence 0 0000 0000001111011 1134444 888888888887654
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+.++...+++.|.|||+++|.... +..+||+++.|+++.++
T Consensus 184 l~~~l~~l~~~g~tiiivsHd~~~------------------~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 184 LFLIMNQLRKEGTAIVYISHKLAE------------------IRRICDRYTVMKDGSSV 224 (510)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEe
Confidence 666666666679999999998765 34456666666655443
No 248
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.34 E-value=1.4e-12 Score=118.05 Aligned_cols=148 Identities=21% Similarity=0.216 Sum_probs=95.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|++++|+||||||||||++.+++...+..|. +++++.... . ..+.+.+++.+|+..++. .++.+.+...
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~ 104 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS-VLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL 104 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCe-EEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC
Confidence 6799999999999999999999999988777786 566654321 1 234557899998876654 4665554321
Q ss_pred ------HHHHhcCCceEEEEecccccCC----------CCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 129 ------DTLIRSGSVDVVVVDSVAALVP----------KGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 129 ------~~~~~~~~~~lvviDsl~~l~~----------~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
..++.. +-++......+ ...+++ |++|+...+|+++..
T Consensus 105 ~~~~~~~~~l~~-----~~l~~~~~~~~~~~~~~~~~~~~~LSg--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 177 (220)
T cd03245 105 ADDERILRAAEL-----AGVTDFVNKHPNGLDLQIGERGRGLSG--GQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177 (220)
T ss_pred CCHHHHHHHHHH-----cCcHHHHHhccccccceecCCCccCCH--HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 111111 11111111111 134544 888888888887654
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+.++...+.+ +.|||+++|..+. + .+||+++.|.++.+
T Consensus 178 ~l~~~l~~~~~-~~tii~~sH~~~~------------------~-~~~d~v~~l~~g~i 216 (220)
T cd03245 178 RLKERLRQLLG-DKTLIIITHRPSL------------------L-DLVDRIIVMDSGRI 216 (220)
T ss_pred HHHHHHHHhcC-CCEEEEEeCCHHH------------------H-HhCCEEEEEeCCeE
Confidence 5555555544 4899999997653 3 36888888876543
No 249
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.34 E-value=3.3e-12 Score=129.99 Aligned_cols=156 Identities=13% Similarity=0.209 Sum_probs=100.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CH--HHHhhcccccCcc---eecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP--SLAETIGVKTENL---LLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~--~~~~~ig~~~~~~---~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++... .. .+.+.++|.+|+. .++...++.+.+..
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~-I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 364 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGE-IRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAI 364 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCe-EEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcc
Confidence 7799999999999999999999999988887787 566654332 11 2345689999873 35555666665432
Q ss_pred HHHH----H-------hc--------CCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------
Q 017792 128 VDTL----I-------RS--------GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-------------- 173 (366)
Q Consensus 128 ~~~~----~-------~~--------~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------- 173 (366)
.... . .. .-...+-+. ..... +...+++ |++|+...||+++..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSg--Gq~qrv~lAral~~~p~lLlLDEPt~~LD 441 (510)
T PRK09700 365 SRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQ-NITELSG--GNQQKVLISKWLCCCPEVIIFDEPTRGID 441 (510)
T ss_pred ccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccC-ccccCCh--HHHHHHHHHHHHhcCCCEEEECCCCCCcC
Confidence 1100 0 00 000011111 11111 1234555 888888888887754
Q ss_pred ------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 174 ------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 174 ------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+.++.+.+++.|.|||+++|.... +..+||+++.|+++++.
T Consensus 442 ~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~------------------~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 442 VGAKAEIYKVMRQLADDGKVILMVSSELPE------------------IITVCDRIAVFCEGRLT 488 (510)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHH------------------HHhhCCEEEEEECCEEE
Confidence 666666666679999999997654 56678999988876543
No 250
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.34 E-value=2.5e-12 Score=133.71 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=105.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CH----HHHhhcccccCcc--eecCCCCHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP----SLAETIGVKTENL--LLAQPDCGEQAL 125 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~----~~~~~ig~~~~~~--~~~~~~~~e~~l 125 (366)
-+++|++++|+|+||||||||++.+++...+..|. ++++++... .. .+.+.+++.+|+. .+....++.+.+
T Consensus 346 ~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l 424 (623)
T PRK10261 346 DLWPGETLSLVGESGSGKSTTGRALLRLVESQGGE-IIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSI 424 (623)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcE-EEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHH
Confidence 36799999999999999999999999998887887 455654322 11 2345789999986 355566777765
Q ss_pred HHHHHHHhc-----------CCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 126 SLVDTLIRS-----------GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 126 ~~~~~~~~~-----------~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
......... .-...+-++ ...... ..++++ |++|+...||+++..
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-~~~LSg--GqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~ 501 (623)
T PRK10261 425 MEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY-PHEFSG--GQRQRICIARALALNPKVIIADEAVSALDVSIRGQ 501 (623)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 432111000 001111121 111112 245655 899999999988754
Q ss_pred HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.++...+++ .|.|||+++|..+. +..+||+++.|.++.++..+
T Consensus 502 i~~ll~~l~~~~g~tvi~isHdl~~------------------v~~~~dri~vl~~G~iv~~g 546 (623)
T PRK10261 502 IINLLLDLQRDFGIAYLFISHDMAV------------------VERISHRVAVMYLGQIVEIG 546 (623)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEec
Confidence 5555555544 59999999997764 56678999999887765544
No 251
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.33 E-value=4.5e-12 Score=118.62 Aligned_cols=158 Identities=20% Similarity=0.177 Sum_probs=99.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--------CCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--------GGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~--------gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
+.+|++++|+|+||||||||++.+++.+.+. .|. +++++.... . ..+.+.+++.+|+.......++.+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e 102 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGD-VTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSARE 102 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceE-EEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHH
Confidence 6799999999999999999999999988765 565 566665432 2 244556788888765444456666
Q ss_pred HHHHHHHHH-h-cC------------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHH---------H-------
Q 017792 124 ALSLVDTLI-R-SG------------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ---------A------- 173 (366)
Q Consensus 124 ~l~~~~~~~-~-~~------------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~---------~------- 173 (366)
.+....... . .. -...+-++....- +...+++ |++|+...+|+++. .
T Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSg--G~~qrv~laral~~~~~~~~~~~~p~lllLD 179 (272)
T PRK13547 103 IVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR-DVTTLSG--GELARVQFARVLAQLWPPHDAAQPPRYLLLD 179 (272)
T ss_pred HHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC-CcccCCH--HHHHHHHHHHHHhccccccccCCCCCEEEEc
Confidence 554311000 0 00 0000001111111 1234444 88999999999883 1
Q ss_pred -------------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 -------------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 -------------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+.+ .+.|||+++|.... +..+||+++.|.++.++..
T Consensus 180 EPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~------------------~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 180 EPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL------------------AARHADRIAMLADGAIVAH 236 (272)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH------------------HHHhCCEEEEEECCeEEEe
Confidence 5555555444 48999999997654 5567899999987765443
No 252
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=4.4e-12 Score=121.66 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=100.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEeCCCCCC---HHH----HhhcccccCcce--ecCCCCH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHALD---PSL----AETIGVKTENLL--LAQPDCG 121 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~----~gg~vl~id~e~~~~---~~~----~~~ig~~~~~~~--~~~~~~~ 121 (366)
|++|++++|+|+||||||||++.+++.+.+ ..|. +++++++... ..+ .+.+++.+|+.. +.+..++
T Consensus 30 i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~-i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v 108 (326)
T PRK11022 30 VKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEK-LEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTV 108 (326)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceE-EEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCH
Confidence 779999999999999999999999998763 4565 5667665432 122 235899999873 3444555
Q ss_pred HHHH-HHHHHHHh----------cCCceEEEEec---ccccCCCCccCCccchhhHHHHHHHHHHH--------------
Q 017792 122 EQAL-SLVDTLIR----------SGSVDVVVVDS---VAALVPKGELDGEMGDAHMAMQARLMSQA-------------- 173 (366)
Q Consensus 122 e~~l-~~~~~~~~----------~~~~~lvviDs---l~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------- 173 (366)
.+.+ +.+..... ..-.+.+-++. ..... ..++++ |++|+...||+++..
T Consensus 109 ~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-p~~LSg--Gq~QRv~iArAL~~~P~llilDEPts~LD 185 (326)
T PRK11022 109 GFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVY-PHQLSG--GMSQRVMIAMAIACRPKLLIADEPTTALD 185 (326)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCC-chhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 4332 22111000 00011111221 11112 245555 889999999988764
Q ss_pred ------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 ------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 ------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+..+...+++ .+.|+|+++|.... +..+||+++.|..+.++..+.
T Consensus 186 ~~~~~~il~lL~~l~~~~g~til~iTHdl~~------------------~~~~adri~vm~~G~ive~g~ 237 (326)
T PRK11022 186 VTIQAQIIELLLELQQKENMALVLITHDLAL------------------VAEAAHKIIVMYAGQVVETGK 237 (326)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEECC
Confidence 5555555544 69999999997754 456789999998887665543
No 253
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=99.33 E-value=2.3e-12 Score=134.02 Aligned_cols=84 Identities=43% Similarity=0.786 Sum_probs=81.2
Q ss_pred EEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHHHHH
Q 017792 246 KIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIKLR 324 (366)
Q Consensus 246 ~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~~~~ 324 (366)
.|++|+.+||++.++|+|.|+.||++.+++++++..+++|.|+|+||+|+++++ |||++++.||++||+++++|+.++|
T Consensus 686 ~i~~~~~~~~~~~~~~~i~~g~gi~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~~~g~e~~~~~l~~~~~~~~~~~~~~~ 765 (790)
T PRK09519 686 GVVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLVENADVADEIEKKIK 765 (790)
T ss_pred hhhhhcccccccceEEEEEecCccCchhhHHHHhhhcCceeccCeeeccCCEEecccHHHHHHHHhcCHHHHHHHHHHHH
Confidence 378899999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHhcc
Q 017792 325 EKLVV 329 (366)
Q Consensus 325 ~~~~~ 329 (366)
+++..
T Consensus 766 ~~~~~ 770 (790)
T PRK09519 766 EKLGI 770 (790)
T ss_pred HHhCC
Confidence 99875
No 254
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.33 E-value=3e-12 Score=114.75 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=89.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++... ...+.+.+++.+++..+....++.+.+.......
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~-v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~ 102 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLARPDAGE-VLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH 102 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc
Confidence 7799999999999999999999999998888887 556654432 2344567888888776666667777665432211
Q ss_pred hcCC-------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcC
Q 017792 133 RSGS-------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQ 185 (366)
Q Consensus 133 ~~~~-------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~ 185 (366)
.... ...+-++..... +...+++ |++++...+|+++.. +.++...+++.+
T Consensus 103 ~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 179 (204)
T PRK13538 103 GPGDDEALWEALAQVGLAGFEDV-PVRQLSA--GQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQG 179 (204)
T ss_pred CccHHHHHHHHHHHcCCHHHhhC-ChhhcCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCC
Confidence 0000 000001111111 1133443 778877788777654 555555555568
Q ss_pred cEEEEEecCCccc
Q 017792 186 TILIFINQVRAKL 198 (366)
Q Consensus 186 ~tVI~i~h~~~~~ 198 (366)
.|||+++|....+
T Consensus 180 ~tiii~sh~~~~i 192 (204)
T PRK13538 180 GMVILTTHQDLPV 192 (204)
T ss_pred CEEEEEecChhhh
Confidence 9999999987763
No 255
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.33 E-value=1.9e-12 Score=116.01 Aligned_cols=138 Identities=20% Similarity=0.243 Sum_probs=88.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---C----HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---D----PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~----~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++.+.+..|. ++++++... . ..+.+.+++.+|...++...++.+.+.+
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~ 99 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQ-VYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDL 99 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHH
Confidence 6799999999999999999999999998887787 566665421 1 1235678999998877776777776654
Q ss_pred HHHHHh-------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~-------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
...... . .-...+-++....-. ..++++ |++++...+|+++.. +.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~lS~--G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 176 (206)
T TIGR03608 100 GLKYKKLSKKEKREKKKEALEKVGLNLKLKQK-IYELSG--GEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDL 176 (206)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCchhhhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHH
Confidence 211100 0 000111111111111 133443 788888888877654 5555
Q ss_pred HHHhhhcCcEEEEEecCCc
Q 017792 178 SHSLSLSQTILIFINQVRA 196 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~ 196 (366)
.+.+.+.+.|||+++|...
T Consensus 177 l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 177 LLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred HHHHHhcCCEEEEEeCCHH
Confidence 5555556899999999764
No 256
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.33 E-value=1e-11 Score=111.43 Aligned_cols=148 Identities=16% Similarity=0.149 Sum_probs=94.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
+++|++++|.|+||||||||++.+++...+..|. +++++.... . ..+.+.+++.+|+..++. .++.+.+......
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~~~ 108 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK-IEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFDEY 108 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCe-EEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccCCC
Confidence 6799999999999999999999999998888887 556654321 1 234567999999886664 3666655322100
Q ss_pred HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcCcEEEEE
Q 017792 132 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQTILIFI 191 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~~tVI~i 191 (366)
....-... ++ +. .....+++ |++|+...||+++.. +.++.+.+. .+.|+|++
T Consensus 109 ~~~~~~~~--l~-~~--~~~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~ 180 (207)
T cd03369 109 SDEEIYGA--LR-VS--EGGLNLSQ--GQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTI 180 (207)
T ss_pred CHHHHHHH--hh-cc--CCCCcCCH--HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEE
Confidence 00000000 00 11 01233443 788888888877654 444444443 38999999
Q ss_pred ecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 192 NQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 192 ~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+|.... +.. ||+++.|.++.+
T Consensus 181 th~~~~------------------~~~-~d~v~~l~~g~i 201 (207)
T cd03369 181 AHRLRT------------------IID-YDKILVMDAGEV 201 (207)
T ss_pred eCCHHH------------------Hhh-CCEEEEEECCEE
Confidence 996653 333 788888887654
No 257
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=3.8e-12 Score=117.73 Aligned_cols=157 Identities=16% Similarity=0.198 Sum_probs=100.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
|.+|++++|+|+||||||||++.+++...+. .|. ++++++.... ..+.+.+++.+|+..++. .++.+.
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 104 (251)
T PRK14249 27 FPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGA-VLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFP-KSIFDN 104 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccE-EEECCEEccccccChHHhhceEEEEecCCccCc-CcHHHH
Confidence 6799999999999999999999999988765 355 5666654321 244567999999987665 477766
Q ss_pred HHHHHHHHhcCC-----------ceEEEE-ecccccCC--CCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVV-DSVAALVP--KGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvvi-Dsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.+......... ...+-+ +.+..+.. ...+++ |++|+...+|+++..
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~ 182 (251)
T PRK14249 105 VAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSG--GQQQRLCIARVLAIEPEVILMDEPCSALDPVS 182 (251)
T ss_pred HhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 654321100000 000000 00111111 223443 888888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+. .++|||+++|.... +..+||+++.|.++++...
T Consensus 183 ~~~l~~~l~~~~-~~~tilivsh~~~~------------------~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 183 TMRIEELMQELK-QNYTIAIVTHNMQQ------------------AARASDWTGFLLTGDLVEY 227 (251)
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCHHH------------------HHhhCCEEEEEeCCeEEEe
Confidence 555555553 47999999997764 5567899999987765433
No 258
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=8.3e-12 Score=115.36 Aligned_cols=158 Identities=15% Similarity=0.131 Sum_probs=98.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH--hh---cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA--QR---QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~--~~---~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++.. .+ ..|. +++++..... ..+.+.++|.+|+..++. .++.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~n 103 (250)
T PRK14245 26 IEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGE-IRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFEN 103 (250)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceE-EEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHH
Confidence 6799999999999999999999998863 22 2565 5666654321 244567999999876665 477666
Q ss_pred HHHHHHHHhcC-----------CceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSG-----------SVDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~-----------~~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.......... -...+-+. .+.... +...+++ |++|+...||+++..
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 181 (250)
T PRK14245 104 VAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSG--GQQQRLCIARAMAVSPSVLLMDEPASALDPIS 181 (250)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 54321110000 00000000 000111 1123444 888888888887643
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.++...+. .++|||+++|.... +..+||+++.|+++.++..+
T Consensus 182 ~~~l~~~l~~~~-~~~tiiivtH~~~~------------------~~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 182 TAKVEELIHELK-KDYTIVIVTHNMQQ------------------AARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred HHHHHHHHHHHh-cCCeEEEEeCCHHH------------------HHhhCCEEEEEECCEEEEEC
Confidence 555555554 37999999997654 55678999999887655544
No 259
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=6.8e-12 Score=116.79 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=94.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++.+.+ ..|. +++++++.. . ..+.+.+++.+|+..++ ..++.+.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~en 108 (261)
T PRK14263 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGH-VHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDN 108 (261)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceE-EEECCEeccccccchHhhhhceEEEecCCccc-cccHHHH
Confidence 779999999999999999999999998865 4565 566765432 1 23456789999987665 4667666
Q ss_pred HHHHHH--------------HHhcCCceEEEEecccccC--CCCccCCccchhhHHHHHHHHHHH---------------
Q 017792 125 LSLVDT--------------LIRSGSVDVVVVDSVAALV--PKGELDGEMGDAHMAMQARLMSQA--------------- 173 (366)
Q Consensus 125 l~~~~~--------------~~~~~~~~lvviDsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------- 173 (366)
+..... .+...... ..+.... +...+++ |++|+...+|++...
T Consensus 109 l~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~i~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEPtsgLD~ 182 (261)
T PRK14263 109 VAFGLRLNRYKGDLGDRVKHALQGAALW----DEVKDKLKVSGLSLSG--GQQQRLCIARAIATEPEVLLLDEPCSALDP 182 (261)
T ss_pred HHHHHhhcCchHHHHHHHHHHHHHcCCc----hhhhhhhhCCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCccCCH
Confidence 543211 11111110 0000010 1123443 788888888887654
Q ss_pred -----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 174 -----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 174 -----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
+.++...+++ +.|||+++|..+. +..+||+++.|.
T Consensus 183 ~~~~~l~~~l~~~~~-~~tii~isH~~~~------------------i~~~~d~v~~l~ 222 (261)
T PRK14263 183 IATRRVEELMVELKK-DYTIALVTHNMQQ------------------AIRVADTTAFFS 222 (261)
T ss_pred HHHHHHHHHHHHHhc-CCeEEEEeCCHHH------------------HHHhCCEEEEEe
Confidence 5555555543 7899999997654 556789998886
No 260
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=6.9e-12 Score=117.15 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=97.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+.+|++++|+|+||||||||++.+++... +..|. +++++.... + ..+.+.++|.+|+..++.. ++.+.
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~en 121 (268)
T PRK14248 44 IEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGE-ILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNN 121 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceE-EEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHH
Confidence 67999999999999999999999999753 34565 566665432 1 2345679999998766653 66665
Q ss_pred HHHHHHHHhc-C----------CceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRS-G----------SVDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~-~----------~~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+......... . ....+-++ .+.... +...+++ |++|+...||+++..
T Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg--Gq~qrl~laral~~~p~lllLDEPt~~LD~~~ 199 (268)
T PRK14248 122 ITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSG--GQQQRLCIARTLAMKPAVLLLDEPASALDPIS 199 (268)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCH--HHHHHHHHHHHHhCCCCEEEEcCCCcccCHHH
Confidence 5432111000 0 00000010 011111 1233444 788888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+...+.+ +.|||+++|.... +..+||+++.|.++.++..+
T Consensus 200 ~~~l~~~l~~~~~-~~tiii~tH~~~~------------------~~~~~d~v~~l~~G~i~~~~ 245 (268)
T PRK14248 200 NAKIEELITELKE-EYSIIIVTHNMQQ------------------ALRVSDRTAFFLNGDLVEYD 245 (268)
T ss_pred HHHHHHHHHHHhc-CCEEEEEEeCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 5555555544 6899999997654 55678999999877654443
No 261
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=4.2e-12 Score=117.65 Aligned_cols=158 Identities=14% Similarity=0.138 Sum_probs=100.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++.+.+. .|. ++++++... . ..+.+.+++.+|+..++ +.++.+.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~en 107 (254)
T PRK14273 30 ILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGN-VIYEGKNIYSNNFDILELRRKIGMVFQTPNPF-LMSIYDN 107 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceE-EEECCEecccccccHHHHhhceEEEeeccccc-cCcHHHH
Confidence 6799999999999999999999999988753 565 566665422 1 23456799999987666 3677776
Q ss_pred HHHHHHHHhcCC-----------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.+......... ...+-+ +.+.... ....+++ |++|+...+|+++..
T Consensus 108 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg--G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 185 (254)
T PRK14273 108 ISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSG--GQQQRLCIARTLAIEPNVILMDEPTSALDPIS 185 (254)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHH
Confidence 654221100000 000000 0011111 1234444 888888888887754
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+...++ .++|||+++|..+. +..+||+++.|.++.++..+
T Consensus 186 ~~~l~~~l~~~~-~~~tvii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 186 TGKIEELIINLK-ESYTIIIVTHNMQQ------------------AGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 555555554 37999999997654 45678999888877654443
No 262
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.32 E-value=4.4e-12 Score=117.18 Aligned_cols=157 Identities=13% Similarity=0.141 Sum_probs=98.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+ ..|. ++++++.... ..+...+++.+|+..++. .++.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~n 103 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGE-VLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDN 103 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE-EEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHH
Confidence 679999999999999999999999987652 3565 5677654321 234567899999877665 677666
Q ss_pred HHHHHHHHhcC---C--------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSG---S--------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~---~--------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.......... . ...+-+ +.+.... +...+++ |++|+...+|++...
T Consensus 104 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD~~~ 181 (250)
T PRK14240 104 VAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSG--GQQQRLCIARALAVEPEVLLMDEPTSALDPIS 181 (250)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 55422110000 0 000000 0011111 1233444 888888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ +.|||+++|..+. +..+||+++.|.++++...
T Consensus 182 ~~~l~~~l~~~~~-~~tiii~sH~~~~------------------~~~~~d~v~~l~~G~i~~~ 226 (250)
T PRK14240 182 TLKIEELIQELKK-DYTIVIVTHNMQQ------------------ASRISDKTAFFLNGEIVEF 226 (250)
T ss_pred HHHHHHHHHHHhc-CCeEEEEEeCHHH------------------HHhhCCEEEEEECCEEEEe
Confidence 5555555543 7899999997654 5567899999987765443
No 263
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.32 E-value=4.7e-12 Score=112.86 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=88.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+.+|++++|+||||||||||++.+++.+.+..|. ++++++... ...+.+.+++.+++..+....++.+.+.......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 101 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGE-VRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIH 101 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccE-EEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHc
Confidence 6799999999999999999999999988887776 566665422 2334567889888876666677777665433221
Q ss_pred hcCC------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcCc
Q 017792 133 RSGS------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQT 186 (366)
Q Consensus 133 ~~~~------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~~ 186 (366)
.... ...+-++...... ...+++ |++++...+|++... +.++...+++.+.
T Consensus 102 ~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 178 (198)
T TIGR01189 102 GGAQRTIEDALAAVGLTGFEDLP-AAQLSA--GQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGG 178 (198)
T ss_pred CCcHHHHHHHHHHcCCHHHhcCC-hhhcCH--HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 1000 0111111111111 133443 777777788777643 5555555555689
Q ss_pred EEEEEecCCc
Q 017792 187 ILIFINQVRA 196 (366)
Q Consensus 187 tVI~i~h~~~ 196 (366)
|||+++|...
T Consensus 179 tii~~sH~~~ 188 (198)
T TIGR01189 179 IVLLTTHQDL 188 (198)
T ss_pred EEEEEEcccc
Confidence 9999999654
No 264
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.32 E-value=7.4e-12 Score=116.28 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=96.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+ ..|. +++++.... . ..+.+.+++.+|+..++...++.+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~-I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~n 105 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGE-VLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDN 105 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceE-EEECCEeccccccChHHHhcceEEEccccccCCCCcHHHH
Confidence 679999999999999999999999998764 3565 566665431 1 2445679999998877776788776
Q ss_pred HHHHHHHHhc--CC---------ceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRS--GS---------VDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~--~~---------~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+......... .. ...+-++ .+.... +...+++ |++|+...||++...
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~ 183 (258)
T PRK14241 106 VVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSG--GQQQRLCIARAIAVEPDVLLMDEPCSALDPIS 183 (258)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 6542211000 00 0000000 000111 1133444 888888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
+.++...+++ ++|||+++|.... +..+||+++.|.
T Consensus 184 ~~~l~~~l~~~~~-~~tviivsH~~~~------------------~~~~~d~i~~l~ 221 (258)
T PRK14241 184 TLAIEDLINELKQ-DYTIVIVTHNMQQ------------------AARVSDQTAFFN 221 (258)
T ss_pred HHHHHHHHHHHhc-CCEEEEEecCHHH------------------HHHhCCEEEEEe
Confidence 5555555543 6899999997654 455788888886
No 265
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=4.6e-12 Score=115.97 Aligned_cols=155 Identities=21% Similarity=0.258 Sum_probs=97.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHHH-
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVD- 129 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~- 129 (366)
-+++|++++|.|+||||||||++.+++...+..|. ++++++... ...+.+.+++.+++..++. .++.+.+....
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~ 100 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS-ILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP 100 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCE-EEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC
Confidence 37799999999999999999999999998888887 566654332 1244567899999877663 46665543211
Q ss_pred --------HHHhcCCceEEEEec----ccccC--CCCccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 130 --------TLIRSGSVDVVVVDS----VAALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 130 --------~~~~~~~~~lvviDs----l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
.........- .++. +.... +...+++ |++++...+|+++.. +.
T Consensus 101 ~~~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~~~LS~--G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~ 177 (236)
T cd03253 101 DATDEEVIEAAKAAQIHD-KIMRFPDGYDTIVGERGLKLSG--GEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177 (236)
T ss_pred CCCHHHHHHHHHHcCcHH-HHHhccccccchhhcCCCcCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0000000000 0000 11111 0123443 788888888877653 55
Q ss_pred HHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 176 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
.+...+++ +.|||+++|.... +.. ||+++.|.++.+..
T Consensus 178 ~~l~~~~~-~~tiii~sh~~~~------------------~~~-~d~~~~l~~g~i~~ 215 (236)
T cd03253 178 AALRDVSK-GRTTIVIAHRLST------------------IVN-ADKIIVLKDGRIVE 215 (236)
T ss_pred HHHHHhcC-CCEEEEEcCCHHH------------------HHh-CCEEEEEECCEEEe
Confidence 55555555 8999999997654 333 88888888776543
No 266
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.32 E-value=4.1e-12 Score=116.50 Aligned_cols=159 Identities=18% Similarity=0.238 Sum_probs=100.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+.+|++++|+|+||||||||+..+++.+.+..|. ++++++.... ....+.+++.++...++...++.+.+........
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~ 101 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGR-IRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK 101 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC
Confidence 6799999999999999999999999988877787 5676654332 1234578999998877776677766643321100
Q ss_pred cCC---c-eE-EEEecc--cccCC--CCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhc
Q 017792 134 SGS---V-DV-VVVDSV--AALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLS 184 (366)
Q Consensus 134 ~~~---~-~l-vviDsl--~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~ 184 (366)
... . .+ -.++.+ ..+.. ...+++ |++|+...+|+++.. +.++...+++.
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~--G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~ 179 (237)
T TIGR00968 102 HPKAKIKARVEELLELVQLEGLGDRYPNQLSG--GQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE 179 (237)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhhCChhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 000 0 00 000100 11110 122333 778888888877643 54555554443
Q ss_pred -CcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 185 -QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 185 -~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
++|||+++|.... +..+||+++.|..+.+...
T Consensus 180 ~~~tvli~sH~~~~------------------~~~~~d~i~~l~~g~i~~~ 212 (237)
T TIGR00968 180 VHVTTVFVTHDQEE------------------AMEVADRIVVMSNGKIEQI 212 (237)
T ss_pred cCCEEEEEeCCHHH------------------HHhhcCEEEEEECCEEEEe
Confidence 8999999997654 5667899988887665433
No 267
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.32 E-value=2.1e-12 Score=117.03 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=97.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H----HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~----~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|.|+||||||||+..+++.+.+..|. +++++..... . .+.+.+++.+|+..++...++.+.+...
T Consensus 28 i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~ 106 (220)
T TIGR02982 28 INPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGS-LKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMA 106 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHH
Confidence 6799999999999999999999999988877787 5666654321 1 3456799999988777666777766543
Q ss_pred HHHHhcCC-----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 129 DTLIRSGS-----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 129 ~~~~~~~~-----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
........ ...+-++...... ...+++ |++|+...+|+++.. +..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~lS~--G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~ 183 (220)
T TIGR02982 107 LELQPNLSYQEARERARAMLEAVGLGDHLDYY-PHNLSG--GQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVEL 183 (220)
T ss_pred HHhccCCCHHHHHHHHHHHHHHcCChhhhhcC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 22110000 0000011111111 123333 778888888877653 4555
Q ss_pred HHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEec
Q 017792 178 SHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 230 (366)
Q Consensus 178 ~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~ 230 (366)
...+.+ .++|||+++|..+ +..+||.++.|.+++
T Consensus 184 l~~~~~~~~~tii~~sh~~~-------------------~~~~~d~v~~l~~g~ 218 (220)
T TIGR02982 184 MQKLAREQGCTILIVTHDNR-------------------ILDVADRIVHMEDGK 218 (220)
T ss_pred HHHHHHHcCCEEEEEeCCHH-------------------HHhhCCEEEEEECCE
Confidence 555444 5899999999753 224688888887653
No 268
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=3.8e-12 Score=129.36 Aligned_cols=139 Identities=17% Similarity=0.213 Sum_probs=89.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEeCCCCCC--H--HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALD--P--SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~--~gg~vl~id~e~~~~--~--~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+.+|++++|+||||||||||++.+++.+.+ ..|. +++++..... . .+.+.+++.+|+..++...++.+.+.+.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 106 (506)
T PRK13549 28 VRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGE-IIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLG 106 (506)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeE-EEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhc
Confidence 679999999999999999999999998875 4666 5666654322 1 2345699999988777777777765432
Q ss_pred HHHHh-c-CC-----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 129 DTLIR-S-GS-----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 129 ~~~~~-~-~~-----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
..... . .. ...+-++...... ...+++ |++|+...||+++.. +.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 183 (506)
T PRK13549 107 NEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-VGNLGL--GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLL 183 (506)
T ss_pred ccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 11000 0 00 0001111111111 234444 888888888887654 55
Q ss_pred HHHHHhhhcCcEEEEEecCCcc
Q 017792 176 KLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
++...+++.+.|||+++|..+.
T Consensus 184 ~~l~~l~~~~~tvi~~tH~~~~ 205 (506)
T PRK13549 184 DIIRDLKAHGIACIYISHKLNE 205 (506)
T ss_pred HHHHHHHHCCCEEEEEeCcHHH
Confidence 6665666678999999998765
No 269
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.32 E-value=8.8e-12 Score=114.96 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=94.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEeCCCCCC--H-HH-HhhcccccCcceecCCCCHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHALD--P-SL-AETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~--~~~gg~vl~id~e~~~~--~-~~-~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
-+++|++++|+|+||||||||++.+++.. .+..|. ++++++.... . .. ...+++.+++..++...+.......
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 101 (248)
T PRK09580 23 EVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGT-VEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQT 101 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceE-EEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHH
Confidence 37799999999999999999999999985 456676 6777764322 2 22 2458888887655443333222221
Q ss_pred HHHHHhcC-Cce----------------EEEE-ecccccCCCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 128 VDTLIRSG-SVD----------------VVVV-DSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 128 ~~~~~~~~-~~~----------------lvvi-Dsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
....+... ... .+-+ +......+...+++ |++++...||++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~illLDEPt~~LD~~ 179 (248)
T PRK09580 102 ALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG--GEKKRNDILQMAVLEPELCILDESDSGLDID 179 (248)
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCH--HHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence 11000000 000 0000 00001110113544 888888888887664
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeee-ceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFY-ASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~-ad~~i~l~~~~~~~~ 234 (366)
+.++...+++.++|||+++|.... +..+ +|+++.|.++.+...
T Consensus 180 ~~~~l~~~l~~l~~~~~tiii~sH~~~~------------------~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 180 ALKIVADGVNSLRDGKRSFIIVTHYQRI------------------LDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHH------------------HHhhhCCEEEEEECCeEEEe
Confidence 555555566678999999997653 3444 788888876654433
No 270
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.32 E-value=4.9e-12 Score=128.42 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=99.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C--HHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D--PSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
-+++|++++|+|+||||||||++.+++...+..|. +++++.... . ..+.+.+++.+|+..++...++.+.+.+..
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 104 (501)
T PRK11288 26 DCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS-ILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQ 104 (501)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCE-EEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcc
Confidence 47899999999999999999999999988887887 566654322 1 234557899999877776667766654321
Q ss_pred H--HHh--------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 130 T--LIR--------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 130 ~--~~~--------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
. ... . .-...+-++...... ...+++ |++|+...||+++.. +.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 181 (501)
T PRK11288 105 LPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-LKYLSI--GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR 181 (501)
T ss_pred cccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-hhhCCH--HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 0 000 0 000011111111111 234554 888888888887764 555
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+...+++.|.|||+++|..+. +..+||+++.|+++.++
T Consensus 182 ~l~~~~~~g~tiiiitHd~~~------------------~~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 182 VIRELRAEGRVILYVSHRMEE------------------IFALCDAITVFKDGRYV 219 (501)
T ss_pred HHHHHHhCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEE
Confidence 555556679999999998765 34456666666655443
No 271
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.32 E-value=4e-12 Score=134.41 Aligned_cols=153 Identities=20% Similarity=0.267 Sum_probs=103.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL------ 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l------ 125 (366)
+++|+.++|+|++|||||||++.+++.+.+..|. +++|+.+..+ ..+++.+++++|+..++.. |+.+++
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~-I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~~ 579 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE-ILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWDPT 579 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCCCC
Confidence 7899999999999999999999999999998886 6777765422 4678899999998876542 333332
Q ss_pred -------HHHHH-----HHhcCCceEEEEecccccCC--CCccCCccchhhHHHHHHHHHHH-----------------H
Q 017792 126 -------SLVDT-----LIRSGSVDVVVVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA-----------------L 174 (366)
Q Consensus 126 -------~~~~~-----~~~~~~~~lvviDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~-----------------L 174 (366)
+.+.. .+.... +.+..... ...+++ |++|+...||++.+. =
T Consensus 580 ~~~~~i~~al~~~~l~~~i~~lp------~gl~t~i~e~G~~LSG--GQrQRiaLARall~~p~iliLDEptS~LD~~te 651 (710)
T TIGR03796 580 IPDADLVRACKDAAIHDVITSRP------GGYDAELAEGGANLSG--GQRQRLEIARALVRNPSILILDEATSALDPETE 651 (710)
T ss_pred CCHHHHHHHHHHhCCHHHHHhCc------CcccceeccCCCCCCH--HHHHHHHHHHHHhhCCCEEEEECccccCCHHHH
Confidence 22211 111110 11111211 133444 899999999998764 2
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
..+...+++.++|+|+++|..+. +. .||+++.|++++++..|+
T Consensus 652 ~~i~~~l~~~~~T~IiitHrl~~------------------i~-~~D~Iivl~~G~i~~~G~ 694 (710)
T TIGR03796 652 KIIDDNLRRRGCTCIIVAHRLST------------------IR-DCDEIIVLERGKVVQRGT 694 (710)
T ss_pred HHHHHHHHhcCCEEEEEecCHHH------------------HH-hCCEEEEEeCCEEEEecC
Confidence 33444445579999999996543 33 389999999887665543
No 272
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.32 E-value=3e-12 Score=112.41 Aligned_cols=140 Identities=19% Similarity=0.247 Sum_probs=86.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcce----------ecCCCCH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLL----------LAQPDCG 121 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~----------~~~~~~~ 121 (366)
+.+|++++|.|+||||||||++.+++.+.+..|. +++++.... + ..+...+++.+|-+. .....+.
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~-v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE-ILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 6799999999999999999999999988888887 566655432 1 234445666554100 0111222
Q ss_pred H--HHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 122 E--QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 122 e--~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
- +-+.++..++ .+++++++|....-... ...+.+.+.+..+. ++.++|+|+++|..+.
T Consensus 101 G~~qrl~laral~--~~p~llllDEP~~~LD~-------------~~~~~~~~~l~~~~---~~~~~tiii~sh~~~~-- 160 (180)
T cd03214 101 GERQRVLLARALA--QEPPILLLDEPTSHLDI-------------AHQIELLELLRRLA---RERGKTVVMVLHDLNL-- 160 (180)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEeCCccCCCH-------------HHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH--
Confidence 2 2233344443 36789999988765520 11122333333332 2238999999997764
Q ss_pred cccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 200 TFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 200 ~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+..+||+++.|.++.+
T Consensus 161 ----------------~~~~~d~~~~l~~g~i 176 (180)
T cd03214 161 ----------------AARYADRVILLKDGRI 176 (180)
T ss_pred ----------------HHHhCCEEEEEECCEE
Confidence 4456888888876543
No 273
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.32 E-value=4.1e-12 Score=113.59 Aligned_cols=134 Identities=15% Similarity=0.162 Sum_probs=87.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CHHHHhhcccccCcceecCCCCHHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSLVD--- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~--- 129 (366)
+++|++++|+|+||||||||++.+++.+.+..|. ++++++... ...+.+.+++.+|+..+....++.+.+....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 101 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGR-VLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADH 101 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccc
Confidence 7799999999999999999999999988888887 456654432 2345667899888876666667766654321
Q ss_pred ------HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh
Q 017792 130 ------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL 183 (366)
Q Consensus 130 ------~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~ 183 (366)
.++.... ++...... ...+++ |++|+...||+++.. +.++...+++
T Consensus 102 ~~~~~~~~l~~~~-----l~~~~~~~-~~~LS~--G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 173 (201)
T cd03231 102 SDEQVEEALARVG-----LNGFEDRP-VAQLSA--GQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA 173 (201)
T ss_pred cHHHHHHHHHHcC-----ChhhhcCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 1111111 11111111 123443 777777778777653 4555544455
Q ss_pred cCcEEEEEecCCcc
Q 017792 184 SQTILIFINQVRAK 197 (366)
Q Consensus 184 ~~~tVI~i~h~~~~ 197 (366)
.++|+|+++|....
T Consensus 174 ~g~tiii~sH~~~~ 187 (201)
T cd03231 174 RGGMVVLTTHQDLG 187 (201)
T ss_pred CCCEEEEEecCchh
Confidence 68999999997654
No 274
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.32 E-value=2.6e-12 Score=130.39 Aligned_cols=157 Identities=13% Similarity=0.211 Sum_probs=102.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C--HHHHhhcccccCcce---ecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D--PSLAETIGVKTENLL---LAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~--~~~~~~ig~~~~~~~---~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++...+.+|. ++++++... . ..+...+++.+|+.. ++...++.+.+..
T Consensus 276 i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~ 354 (501)
T PRK11288 276 VRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQ-VYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINI 354 (501)
T ss_pred EeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCce-EEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhcc
Confidence 6899999999999999999999999998888887 466654322 1 123456899998753 5555667665432
Q ss_pred HHH-H----------------HhcCCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 128 VDT-L----------------IRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 128 ~~~-~----------------~~~~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
... . +.. -...+-++ .... .+...+++ |++|+...|++++..
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~-~~~~~LSg--Gq~qrl~la~al~~~p~lllLDEPt~~LD~~ 430 (501)
T PRK11288 355 SARRHHLRAGCLINNRWEAENADR-FIRSLNIKTPSRE-QLIMNLSG--GNQQKAILGRWLSEDMKVILLDEPTRGIDVG 430 (501)
T ss_pred ccchhhcccccccChHHHHHHHHH-HHHhcCcccCCcc-CccccCCH--HHHHHHHHHHHHccCCCEEEEcCCCCCCCHh
Confidence 100 0 000 00111111 1111 11234544 888888888887653
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+.|.|||+++|..+. +..+||+++.|.+++++..
T Consensus 431 ~~~~l~~~l~~l~~~g~tviivsHd~~~------------------~~~~~d~i~~l~~g~i~~~ 477 (501)
T PRK11288 431 AKHEIYNVIYELAAQGVAVLFVSSDLPE------------------VLGVADRIVVMREGRIAGE 477 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHHH------------------HHhhCCEEEEEECCEEEEE
Confidence 666666667779999999998765 5567899998887665443
No 275
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=8.5e-12 Score=115.38 Aligned_cols=157 Identities=13% Similarity=0.149 Sum_probs=99.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+ ..|. ++++++.... ..+.+.+++.+|+..++. .++.+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~en 104 (251)
T PRK14270 27 IYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGE-VLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDN 104 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccE-EEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHH
Confidence 679999999999999999999999998764 4565 5666654321 234567999999887665 677776
Q ss_pred HHHHHHHHhcCC-----------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.+......... .+.+-+ +.+.... +...+++ |++|+...+|+++..
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD~~~ 182 (251)
T PRK14270 105 VAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSG--GQQQRLCIARTIAVKPDVILMDEPTSALDPIS 182 (251)
T ss_pred HHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 653221100000 000000 0001111 1233444 888888888887643
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ +.|||+++|..+. +..+||+++.|..+.+...
T Consensus 183 ~~~l~~~L~~~~~-~~tiiivsH~~~~------------------~~~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 183 TLKIEDLMVELKK-EYTIVIVTHNMQQ------------------ASRVSDYTAFFLMGDLIEF 227 (251)
T ss_pred HHHHHHHHHHHHh-CCeEEEEEcCHHH------------------HHHhcCEEEEEECCeEEEe
Confidence 5555555544 5899999997654 5567899999987765443
No 276
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.32 E-value=1.2e-11 Score=110.41 Aligned_cols=135 Identities=15% Similarity=0.146 Sum_probs=90.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVD--- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~--- 129 (366)
+.+|++++|+|+||||||||++.+++...+..|. ++++++.... ..+.+++++.+++..+....++.+.+....
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~ 102 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGE-ILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS 102 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCee-EEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC
Confidence 5699999999999999999999999988887776 6777765432 345667899988877666678777665421
Q ss_pred -------HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 130 -------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 130 -------~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
..+..... ..... .+...+++ |++++...+|+++.. +.++...++
T Consensus 103 ~~~~~~~~~l~~~~l-----~~~~~-~~~~~LS~--G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~ 174 (200)
T PRK13540 103 PGAVGITELCRLFSL-----EHLID-YPCGLLSS--GQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR 174 (200)
T ss_pred cchHHHHHHHHHcCC-----chhhh-CChhhcCH--HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence 11111110 00000 01123443 788888888877654 555555555
Q ss_pred hcCcEEEEEecCCccc
Q 017792 183 LSQTILIFINQVRAKL 198 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~ 198 (366)
+.++|||+++|....+
T Consensus 175 ~~~~tiii~sh~~~~~ 190 (200)
T PRK13540 175 AKGGAVLLTSHQDLPL 190 (200)
T ss_pred HcCCEEEEEeCCchhc
Confidence 5689999999976653
No 277
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=8.8e-12 Score=115.26 Aligned_cols=157 Identities=16% Similarity=0.122 Sum_probs=97.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+.+|++++|+|+||||||||++.+++... +..|. +++++..... ..+.+.++|.+|+..++.. ++.+.
T Consensus 28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~n 105 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGE-LDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDN 105 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceE-EEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHH
Confidence 66999999999999999999999999875 23565 5666543211 1345678999998766654 66665
Q ss_pred HHHHHHHHhcC----C--------ceEEEEec-ccccC--CCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 125 LSLVDTLIRSG----S--------VDVVVVDS-VAALV--PKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~----~--------~~lvviDs-l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
+.......... . .+.+-+.. +.... +...+++ |++|+...+|++...
T Consensus 106 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--Gq~qrv~laral~~~p~llllDEPt~~LD~~ 183 (251)
T PRK14244 106 VAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSG--GQQQRLCIARAIAVKPTMLLMDEPCSALDPV 183 (251)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 54321110000 0 00000100 00000 1123443 788888888887653
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ ++|||+++|..+. +..+||+++.|.++.+...
T Consensus 184 ~~~~l~~~l~~~~~-~~tiiiisH~~~~------------------~~~~~d~i~~l~~G~i~~~ 229 (251)
T PRK14244 184 ATNVIENLIQELKK-NFTIIVVTHSMKQ------------------AKKVSDRVAFFQSGRIVEY 229 (251)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEeCCHHH------------------HHhhcCEEEEEECCEEEEe
Confidence 5555555543 8999999997654 5667899999988765443
No 278
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=8.5e-12 Score=115.34 Aligned_cols=157 Identities=10% Similarity=0.106 Sum_probs=97.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++... +..|. +++++..... ..+.+.+++.+|+..++. .++.+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~-v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~en 104 (251)
T PRK14251 27 FEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGE-IKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDN 104 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceE-EEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHH
Confidence 67999999999999999999999999876 24665 5666654321 234567899999877664 577776
Q ss_pred HHHHHHHHhcC-------C----ceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSG-------S----VDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~-------~----~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.......... . .+.+-+. .+.... +...+++ |++|+...+|+++..
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--Gq~qr~~laral~~~p~llllDEP~~~LD~~~ 182 (251)
T PRK14251 105 VAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSG--GQQQRICIARALAVRPKVVLLDEPTSALDPIS 182 (251)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCH--HHHHHHHHHHHHhcCCCEEEecCCCccCCHHH
Confidence 65422110000 0 0000010 000000 1123443 788888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+.+ +.|||+++|.... +..+||+++.|.++.+...
T Consensus 183 ~~~l~~~l~~~~~-~~tiiiisH~~~~------------------~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 183 SSEIEETLMELKH-QYTFIMVTHNLQQ------------------AGRISDQTAFLMNGDLIEA 227 (251)
T ss_pred HHHHHHHHHHHHc-CCeEEEEECCHHH------------------HHhhcCEEEEEECCEEEEe
Confidence 4444444433 6899999997654 5567899998887665433
No 279
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=7.9e-12 Score=117.28 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=98.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC----HHHHhhcccccCcceecCCCCHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQAL 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~~~~~~e~~l 125 (366)
|++|++++|+|+||||||||++.+++.+.+ ..|. +++++..... ..+...++|.+|+..++. .++.+.+
T Consensus 44 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni 121 (276)
T PRK14271 44 FPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGD-VLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNV 121 (276)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceE-EEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHH
Confidence 779999999999999999999999998875 3565 5666654321 245667899999877665 6776655
Q ss_pred HHHHHHHhcCC-----------ceEEEEec-ccccC--CCCccCCccchhhHHHHHHHHHHH------------------
Q 017792 126 SLVDTLIRSGS-----------VDVVVVDS-VAALV--PKGELDGEMGDAHMAMQARLMSQA------------------ 173 (366)
Q Consensus 126 ~~~~~~~~~~~-----------~~lvviDs-l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~------------------ 173 (366)
........... ...+-+.. +.... ....+++ |++|+...||+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSg--Gq~qrl~LAral~~~p~lllLDEPt~~LD~~~~ 199 (276)
T PRK14271 122 LAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSG--GQQQLLCLARTLAVNPEVLLLDEPTSALDPTTT 199 (276)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 43211100000 00000100 00011 1123444 888888888887654
Q ss_pred --HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 --LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 --L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ ++|||+++|.... +..+||+++.|.++.+...
T Consensus 200 ~~l~~~L~~~~~-~~tiiivsH~~~~------------------~~~~~dri~~l~~G~i~~~ 243 (276)
T PRK14271 200 EKIEEFIRSLAD-RLTVIIVTHNLAQ------------------AARISDRAALFFDGRLVEE 243 (276)
T ss_pred HHHHHHHHHHhc-CCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 4454544444 5899999997654 5567899999987654433
No 280
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.31 E-value=2.4e-12 Score=130.74 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=98.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEeCCCCCC--H--HHHhhcccccCcceecCCCCHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALD--P--SLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~--~gg~vl~id~e~~~~--~--~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
-+++|++++|+||||||||||++.+++...+ ..|. +++++..... . .+.+.+++.+|+..++...++.+.+.+
T Consensus 23 ~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 101 (500)
T TIGR02633 23 EVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGE-IYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFL 101 (500)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeE-EEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHh
Confidence 3779999999999999999999999998765 4566 5666554322 1 234568999998877777777776543
Q ss_pred HHHHHh-c--CC-----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 128 VDTLIR-S--GS-----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 128 ~~~~~~-~--~~-----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
...... . .. ...+-++....-.+...+++ |++|+...||+++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--G~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~ 179 (500)
T TIGR02633 102 GNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGG--GQQQLVEIAKALNKQARLLILDEPSSSLTEKETEI 179 (500)
T ss_pred hccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Confidence 211000 0 00 00000111100011234554 888888888887764
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+.++...+++.|+|||+++|..+. +..+||+++.|+++.+
T Consensus 180 l~~~l~~l~~~g~tviiitHd~~~------------------~~~~~d~i~~l~~G~i 219 (500)
T TIGR02633 180 LLDIIRDLKAHGVACVYISHKLNE------------------VKAVCDTICVIRDGQH 219 (500)
T ss_pred HHHHHHHHHhCCCEEEEEeCcHHH------------------HHHhCCEEEEEeCCeE
Confidence 556666666679999999998765 3445666666665544
No 281
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=1.9e-12 Score=117.94 Aligned_cols=154 Identities=23% Similarity=0.268 Sum_probs=94.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|.||||||||||++.+++...+..|. +++++.... + ..+.+.++|.+|+..++.. ++.+.+....
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~ 103 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ-ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN 103 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC
Confidence 6799999999999999999999999998887786 666664332 1 2445678999988765543 4444432210
Q ss_pred -------HHHhcCCce----EE--EEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 130 -------TLIRSGSVD----VV--VVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 130 -------~~~~~~~~~----lv--viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
......... .+ -++....-. ...+++ |++++...+|+++.. +..
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~LS~--G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 180 (229)
T cd03254 104 ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGEN-GGNLSQ--GERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180 (229)
T ss_pred CCHHHHHHHHHHhChHHHHHhCcccccCHhhcC-CCcCCH--HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 000000000 00 001000000 133443 778888888877654 555
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+...+. .+.|||+++|.... +. .||+++.|.++.+..
T Consensus 181 ~l~~~~-~~~tii~~sh~~~~------------------~~-~~d~i~~l~~g~~~~ 217 (229)
T cd03254 181 ALEKLM-KGRTSIIIAHRLST------------------IK-NADKILVLDDGKIIE 217 (229)
T ss_pred HHHHhc-CCCEEEEEecCHHH------------------Hh-hCCEEEEEeCCeEEE
Confidence 555554 48999999997654 33 378888888766543
No 282
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=9.3e-12 Score=116.67 Aligned_cols=150 Identities=15% Similarity=0.192 Sum_probs=94.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++.+.+ ..|. +++++..... ..+...+++.+|+..++.. ++.+.
T Consensus 43 i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~n 120 (274)
T PRK14265 43 IPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGR-LLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYEN 120 (274)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCce-EEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHH
Confidence 679999999999999999999999988753 3565 5667654321 2345679999998776653 66665
Q ss_pred HHHHHHHH------h---cCCceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 125 LSLVDTLI------R---SGSVDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 125 l~~~~~~~------~---~~~~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+....... . ......+-+ +.+.... +...+++ |++|+...||+++..
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg--Gq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~ 198 (274)
T PRK14265 121 IAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSG--GQQQRLCIARAIAMKPDVLLMDEPCSALDPISTR 198 (274)
T ss_pred HHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCH--HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence 54321100 0 000000000 0011111 1233444 888888888887764
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
+.++...+++ ++|||+++|.... +..+||+++.|.
T Consensus 199 ~l~~~L~~~~~-~~tiii~sH~~~~------------------~~~~~d~i~~l~ 234 (274)
T PRK14265 199 QVEELCLELKE-QYTIIMVTHNMQQ------------------ASRVADWTAFFN 234 (274)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHH------------------HHHhCCEEEEEe
Confidence 5555555544 6899999997764 566789999887
No 283
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.31 E-value=6.9e-12 Score=127.92 Aligned_cols=158 Identities=15% Similarity=0.136 Sum_probs=102.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe-CCCC-----CC----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID-AEHA-----LD----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id-~e~~-----~~----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+||||||||||++.+++...+..|.+ +++ +... .. ..+.+.++|.+|+..++...++.+.
T Consensus 307 i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i-~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~ 385 (520)
T TIGR03269 307 VKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV-NVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDN 385 (520)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHH
Confidence 78999999999999999999999999988777874 553 3211 11 1234569999998877777788777
Q ss_pred HHHHHHH-Hhc----CC----ceEEEEec-----ccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTL-IRS----GS----VDVVVVDS-----VAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~-~~~----~~----~~lvviDs-----l~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.....+ ... .. ...+-++. .... +...+++ |++|+...||+++..
T Consensus 386 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~~~~LSg--Gq~qrv~laral~~~p~lLllDEPt~~LD~~~ 462 (520)
T TIGR03269 386 LTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDK-YPDELSE--GERHRVALAQVLIKEPRIVILDEPTGTMDPIT 462 (520)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhC-ChhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 6542110 000 00 01111111 1111 1234554 888888888887654
Q ss_pred ---HHHHHHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+. +.+.|||+++|.... +..+||+++.|+++.++..
T Consensus 463 ~~~l~~~l~~l~~~~g~tvi~vsHd~~~------------------~~~~~d~i~~l~~G~i~~~ 509 (520)
T TIGR03269 463 KVDVTHSILKAREEMEQTFIIVSHDMDF------------------VLDVCDRAALMRDGKIVKI 509 (520)
T ss_pred HHHHHHHHHHHHHHcCcEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 555555444 459999999998765 5567899999987765444
No 284
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=3.9e-12 Score=129.36 Aligned_cols=157 Identities=18% Similarity=0.245 Sum_probs=101.2
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCC--C--HHHHhhcccccCcc---eecCCCCHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHAL--D--PSLAETIGVKTENL---LLAQPDCGEQAL 125 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~--~--~~~~~~ig~~~~~~---~~~~~~~~e~~l 125 (366)
-+++|++++|+|+||||||||++.+++...+ .+|. +++++.... . ..+...+++.+|+. .++...++.+.+
T Consensus 284 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 362 (506)
T PRK13549 284 SLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGE-IFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNI 362 (506)
T ss_pred EEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcE-EEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHh
Confidence 3789999999999999999999999998873 6776 566554321 1 12345689999885 345556776665
Q ss_pred HHHH--HHHh----cC-----C----ceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 126 SLVD--TLIR----SG-----S----VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 126 ~~~~--~~~~----~~-----~----~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
.+.. .+.. .. . ...+-++ ..... +...+++ |++|+...||+++..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSg--G~kqrv~lA~al~~~p~lllLDEPt~~LD~~ 439 (506)
T PRK13549 363 TLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPEL-AIARLSG--GNQQKAVLAKCLLLNPKILILDEPTRGIDVG 439 (506)
T ss_pred hhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccc-ccccCCH--HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHh
Confidence 4311 0000 00 0 0011111 01111 1234554 888888888887754
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+.++...+++.|+|||+++|..+. +..+||+++.|.+++++
T Consensus 440 ~~~~l~~~l~~l~~~g~tvi~~sHd~~~------------------~~~~~d~v~~l~~G~i~ 484 (506)
T PRK13549 440 AKYEIYKLINQLVQQGVAIIVISSELPE------------------VLGLSDRVLVMHEGKLK 484 (506)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEE
Confidence 666666666679999999998765 56678999988876544
No 285
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.31 E-value=6.2e-12 Score=117.68 Aligned_cols=157 Identities=12% Similarity=0.120 Sum_probs=99.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeCCCCC-----CHHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~e~~~-----~~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
|++|++++|+|+||||||||++.+++.+. +..|. +++++.... ...+.+.+++.+|+..++. .++.+.
T Consensus 47 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 124 (271)
T PRK14238 47 IHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGK-ILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDN 124 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCcee-EEECCEEcccccccHHHHhhhEEEEecCCcccc-ccHHHH
Confidence 67999999999999999999999999876 35666 556654331 1244567999999877665 377666
Q ss_pred HHHHHHHHhcCC-----------ceEE-EEecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVV-VVDSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lv-viDsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+........... .+.. ..+.+.... +...+++ |++|+...+|+++..
T Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSg--Ge~qrv~laraL~~~p~lllLDEPt~~LD~~~ 202 (271)
T PRK14238 125 VTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSG--GQQQRLCIARCLAIEPDVILMDEPTSALDPIS 202 (271)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHH
Confidence 543221100000 0000 001111111 1233444 888888888887653
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ +.|||+++|.... +..+||+++.|.++.+...
T Consensus 203 ~~~l~~~l~~~~~-~~tiiivsH~~~~------------------i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 203 TLKVEELVQELKK-DYSIIIVTHNMQQ------------------AARISDKTAFFLNGYVNEY 247 (271)
T ss_pred HHHHHHHHHHHHc-CCEEEEEEcCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 5555555544 7999999997654 5567899999987765443
No 286
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=9e-12 Score=115.20 Aligned_cols=158 Identities=17% Similarity=0.183 Sum_probs=100.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+.+|++++|+|+||||||||++.+++.+.+. .|. ++++++... . ..+...+++.+|+..++...++.+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~en 105 (252)
T PRK14272 27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGR-ILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDN 105 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCcee-EEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHH
Confidence 6799999999999999999999999987653 465 666665432 1 2445679999999877777777776
Q ss_pred HHHHHHHHhc-CC----------ceEEE-EecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRS-GS----------VDVVV-VDSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~-~~----------~~lvv-iDsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+......... .. ...+- .+.+.... +...+++ |++++...||++...
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD~~~ 183 (252)
T PRK14272 106 VVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSG--GQQQRLCIARALAVEPEILLMDEPTSALDPAS 183 (252)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 6532211000 00 00000 00111111 1233444 788888888877653
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+.+.+++ ++|||+++|.... +..+||+++.|.++++...
T Consensus 184 ~~~l~~~l~~~~~-~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 184 TARIEDLMTDLKK-VTTIIIVTHNMHQ------------------AARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred HHHHHHHHHHHhc-CCeEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 4455555543 6999999997654 5567899999987765443
No 287
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=4.1e-12 Score=122.18 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=100.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEeCCCCCC---HHH----HhhcccccCcce--ecCCCCH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHALD---PSL----AETIGVKTENLL--LAQPDCG 121 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~----~gg~vl~id~e~~~~---~~~----~~~ig~~~~~~~--~~~~~~~ 121 (366)
|.+|++++|+|+||||||||++.+++...+ ..|. +++++..... ..+ .+.+++.+|+.. +.+..++
T Consensus 30 i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv 108 (330)
T PRK15093 30 LTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADR-MRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERV 108 (330)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceE-EEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccH
Confidence 679999999999999999999999998752 4565 5667654322 122 236899999875 3344555
Q ss_pred HHHHHH-HHHHHhc---------------CCceEEEEecc---cccCCCCccCCccchhhHHHHHHHHHHH---------
Q 017792 122 EQALSL-VDTLIRS---------------GSVDVVVVDSV---AALVPKGELDGEMGDAHMAMQARLMSQA--------- 173 (366)
Q Consensus 122 e~~l~~-~~~~~~~---------------~~~~lvviDsl---~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------- 173 (366)
.+.+.. +...... .-...+-++.. ..-. ..++++ |++|+...||+++..
T Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~-p~~LSg--G~~QRv~iArAL~~~P~llilDEP 185 (330)
T PRK15093 109 GRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF-PYELTE--GECQKVMIAIALANQPRLLIADEP 185 (330)
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC-chhCCH--HHHHHHHHHHHHHCCCCEEEEeCC
Confidence 554432 1100000 00011111111 1111 134554 888888888887654
Q ss_pred -----------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 -----------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 -----------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++...+++ .|+|||+|+|.... +..+||+++.|.++.++..+.
T Consensus 186 ts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~------------------v~~~~dri~vm~~G~ive~g~ 242 (330)
T PRK15093 186 TNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQM------------------LSQWADKINVLYCGQTVETAP 242 (330)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEECC
Confidence 5555555554 59999999997764 556789999998887766543
No 288
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.31 E-value=8.2e-12 Score=115.49 Aligned_cols=157 Identities=13% Similarity=0.111 Sum_probs=98.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~---~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++... + ..|. ++++++... . ..+.+.+++.+|+..++. .++.+.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 105 (252)
T PRK14239 28 FYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGS-IVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYEN 105 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccce-EEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHH
Confidence 67999999999999999999999998743 4 2565 566665431 1 234567999999887765 677776
Q ss_pred HHHHHHHHhcCC-----------ceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+........... .+.+-+. .+.... ....+++ |++++...||+++..
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~ 183 (252)
T PRK14239 106 VVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSG--GQQQRVCIARVLATSPKIILLDEPTSALDPIS 183 (252)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 654321100000 0000000 000111 1133444 888888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+.+ +.|||+++|.... +..+||+++.|.++.+...
T Consensus 184 ~~~l~~~l~~~~~-~~tii~~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14239 184 AGKIEETLLGLKD-DYTMLLVTRSMQQ------------------ASRISDRTGFFLDGDLIEY 228 (252)
T ss_pred HHHHHHHHHHHhh-CCeEEEEECCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 5555555543 6899999997654 5567899999987765443
No 289
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.31 E-value=1.1e-11 Score=114.58 Aligned_cols=160 Identities=20% Similarity=0.251 Sum_probs=95.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHH--HhhcCCeEEEEeCCCCCC--H-HHHh-hcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAE--AQRQGGYCVFIDAEHALD--P-SLAE-TIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~--~~~~gg~vl~id~e~~~~--~-~~~~-~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+|+||||||||++.+++. +.+..|. +++++..... . .+.+ .+++.+|+..++...+..+.+...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~ 108 (252)
T CHL00131 30 INKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGD-ILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLA 108 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCce-EEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHh
Confidence 779999999999999999999999886 3455676 5666553321 2 2222 366777877666656666654432
Q ss_pred HHHHhc----CC-------------ceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 129 DTLIRS----GS-------------VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 129 ~~~~~~----~~-------------~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
...... .. ...+-+. ......+...+++ |++++...||+++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 186 (252)
T CHL00131 109 YNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSG--GEKKRNEILQMALLDSELAILDETDSGLDIDA 186 (252)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 110000 00 0000010 0000111112444 788888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeee-ceEEEEEEEeceeecC
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFY-ASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~-ad~~i~l~~~~~~~~~ 235 (366)
+.++...+.+.+.|||+++|.... +..+ ||+++.|.++.++..+
T Consensus 187 ~~~l~~~l~~~~~~g~tii~~tH~~~~------------------~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 187 LKIIAEGINKLMTSENSIILITHYQRL------------------LDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHH------------------HHhhhCCEEEEEeCCEEEEec
Confidence 556555555568999999997654 3333 6888888877655444
No 290
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.30 E-value=9.2e-12 Score=116.57 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=98.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++.+.+ ..|. +++++.... . ..+.+.+++.+|+..++.. ++.+.
T Consensus 48 i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~-i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~en 125 (272)
T PRK14236 48 IPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGE-IRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYEN 125 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceE-EEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHH
Confidence 779999999999999999999999998763 4666 566665432 1 2345678999998776654 77766
Q ss_pred HHHHHHHHhcCC-----------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+........... .+.+-+ +.+.... ....+++ |++|+...||++...
T Consensus 126 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--Gq~qrv~laral~~~p~lllLDEPt~gLD~~~ 203 (272)
T PRK14236 126 VVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSG--GQQQRLVIARAIAIEPEVLLLDEPTSALDPIS 203 (272)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCH--HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence 643211100000 000000 0000111 1123443 788888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+++ +.|||+++|..+. +..+||+++.|.++++...
T Consensus 204 ~~~l~~~L~~~~~-~~tiiivtH~~~~------------------~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 204 TLKIEELITELKS-KYTIVIVTHNMQQ------------------AARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHHHHHHHHHHHh-CCeEEEEeCCHHH------------------HHhhCCEEEEEECCEEEec
Confidence 5555555554 6899999997654 4557899999987765443
No 291
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.30 E-value=1e-11 Score=125.77 Aligned_cols=152 Identities=14% Similarity=0.114 Sum_probs=94.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCccee--c-C-----CCCHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLL--A-Q-----PDCGEQ 123 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~--~-~-----~~~~e~ 123 (366)
+++|++++|+||||||||||++.+++.+.+..|.+ ++++.... . ..+.+.+++.+|+..+ . . ..++.+
T Consensus 26 i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i-~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 104 (490)
T PRK10938 26 LNAGDSWAFVGANGSGKSALARALAGELPLLSGER-QSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAE 104 (490)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceE-EECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHH
Confidence 67999999999999999999999999888877874 55554322 2 2344568988886432 1 1 234444
Q ss_pred HHH-------HHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 124 ALS-------LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 124 ~l~-------~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
.+. .+..++... -++...... ...+++ |++|+...|++++.. +.+
T Consensus 105 ~~~~~~~~~~~~~~~l~~~-----~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 176 (490)
T PRK10938 105 IIQDEVKDPARCEQLAQQF-----GITALLDRR-FKYLST--GETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAE 176 (490)
T ss_pred hcccchhHHHHHHHHHHHc-----CCHhhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 321 122222211 112221111 245555 888888888887654 555
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+...+++.|.|||+++|.... +..+||+++.|+++.++.
T Consensus 177 ~l~~~~~~g~tvii~tH~~~~------------------~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 177 LLASLHQSGITLVLVLNRFDE------------------IPDFVQFAGVLADCTLAE 215 (490)
T ss_pred HHHHHHhcCCeEEEEeCCHHH------------------HHhhCCEEEEEECCEEEE
Confidence 555555668999999998765 344566666666554433
No 292
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.30 E-value=6.9e-12 Score=112.63 Aligned_cols=139 Identities=22% Similarity=0.276 Sum_probs=88.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+++|++++|+|+||||||||+..+++...+..|. ++++++......+.+.+++.++...+....++.+.+.........
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~ 103 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT-IKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGG 103 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCC
Confidence 6799999999999999999999999988887787 556665432222556788888776666666777766543221100
Q ss_pred CC------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcCcEE
Q 017792 135 GS------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQTIL 188 (366)
Q Consensus 135 ~~------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~~tV 188 (366)
.. ...+-+...... +...+++ |++++...+|++... +..+...+++.++||
T Consensus 104 ~~~~~~~~l~~~~l~~~~~~-~~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 180 (207)
T PRK13539 104 EELDIAAALEAVGLAPLAHL-PFGYLSA--GQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIV 180 (207)
T ss_pred cHHHHHHHHHHcCCHHHHcC-ChhhcCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 00 000001111111 1223443 778888888877653 555555555569999
Q ss_pred EEEecCCcc
Q 017792 189 IFINQVRAK 197 (366)
Q Consensus 189 I~i~h~~~~ 197 (366)
|+++|..+.
T Consensus 181 ii~sH~~~~ 189 (207)
T PRK13539 181 IAATHIPLG 189 (207)
T ss_pred EEEeCCchh
Confidence 999998765
No 293
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=6.1e-12 Score=116.23 Aligned_cols=158 Identities=17% Similarity=0.197 Sum_probs=98.9
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
-+++|++++|+|+||||||||++.+++...+ ..|. +++++..... ..+.+.+++.+|+..++. .++.+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~-i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 102 (250)
T PRK14262 25 KIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGK-IYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYD 102 (250)
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceE-EEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHH
Confidence 3679999999999999999999999988763 4565 6677654321 234567999999877665 67766
Q ss_pred HHHHHHHHHhcCC-----------ceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 124 ALSLVDTLIRSGS-----------VDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 124 ~l~~~~~~~~~~~-----------~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
.+........... .+.+-++ .+.... ....+++ |++|+...+|+++..
T Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--Gq~qr~~la~al~~~p~llllDEP~~~LD~~ 180 (250)
T PRK14262 103 NVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSG--GQQQRLCIARALAVEPEVILLDEPTSALDPI 180 (250)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCH--HHHHHHHHHHHHhCCCCEEEEeCCccccCHH
Confidence 6654221100000 0000010 000111 1123443 788888888877654
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ +.|||+++|..+. +..+||+++.|+++++...
T Consensus 181 ~~~~l~~~l~~~~~-~~tili~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14262 181 ATQRIEKLLEELSE-NYTIVIVTHNIGQ------------------AIRIADYIAFMYRGELIEY 226 (250)
T ss_pred HHHHHHHHHHHHhc-CcEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 5555555444 6899999997654 4567899999887765443
No 294
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=1e-11 Score=117.18 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=98.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~---~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
-|.+|++++|+|+||||||||++.+++... + ..|. +++++.... . ..+.+.++|.+|+..++. .++.+
T Consensus 61 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~-I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~e 138 (286)
T PRK14275 61 DILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGA-LMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFP-KSIFD 138 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceE-EEECCEEhhhcccchHHhhhcEEEECCCCCCCc-cCHHH
Confidence 377999999999999999999999999754 3 5665 566665432 1 234567999999877665 37777
Q ss_pred HHHHHHHHHhcCC-----------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 124 ALSLVDTLIRSGS-----------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 124 ~l~~~~~~~~~~~-----------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
.+.+......... ...+-+ +.+.... ....+++ |++|+...||+++..
T Consensus 139 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg--Gq~qrv~LAraL~~~p~lllLDEPt~gLD~~ 216 (286)
T PRK14275 139 NIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSG--GQQQRLCVARTLAVEPEILLLDEPTSALDPK 216 (286)
T ss_pred HHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 6654321100000 000000 0011111 1133444 788888888887654
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.. +.+||+++|.... +..+||+++.|+++.+...
T Consensus 217 ~~~~l~~~L~~~~~-~~tvIivsH~~~~------------------~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 217 ATAKIEDLIQELRG-SYTIMIVTHNMQQ------------------ASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 4455544443 6899999997654 4567899999987665443
No 295
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.30 E-value=4.9e-12 Score=128.42 Aligned_cols=156 Identities=18% Similarity=0.234 Sum_probs=100.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C--HHHHhhcccccCcc---eecCCCCHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D--PSLAETIGVKTENL---LLAQPDCGEQALS 126 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~--~~~~~~ig~~~~~~---~~~~~~~~e~~l~ 126 (366)
-+++|++++|+||||||||||++.+++...+..|. +++++.... . ..+.+.+||.+|+. .++...++.+.+.
T Consensus 274 ~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~-I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 352 (501)
T PRK10762 274 TLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGY-VTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMS 352 (501)
T ss_pred EEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhh
Confidence 36799999999999999999999999988877776 566654321 2 12345699999985 3555667776654
Q ss_pred HHH-HHHhc-----------CC----ceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 127 LVD-TLIRS-----------GS----VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 127 ~~~-~~~~~-----------~~----~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
... ..... .. ...+-+. ....- +...+++ |++|+...||+++..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSg--Gekqrv~lA~al~~~p~lllLDEPt~~LD~~ 429 (501)
T PRK10762 353 LTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQ-AIGLLSG--GNQQKVAIARGLMTRPKVLILDEPTRGVDVG 429 (501)
T ss_pred hhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccC-chhhCCH--HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHh
Confidence 311 00000 00 0111111 11111 1234444 888888888887654
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+.++...+.+.|.|||+++|..+. +..+||+++.|.++.+
T Consensus 430 ~~~~l~~~l~~~~~~g~tviivtHd~~~------------------~~~~~d~v~~l~~G~i 473 (501)
T PRK10762 430 AKKEIYQLINQFKAEGLSIILVSSEMPE------------------VLGMSDRILVMHEGRI 473 (501)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHHH------------------HHhhCCEEEEEECCEE
Confidence 556666666669999999997764 5567899988887654
No 296
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.29 E-value=8.6e-12 Score=115.82 Aligned_cols=153 Identities=20% Similarity=0.166 Sum_probs=95.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC-----CCC--H-H----HHhhcccccCcce--ecCCCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH-----ALD--P-S----LAETIGVKTENLL--LAQPDC 120 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~-----~~~--~-~----~~~~ig~~~~~~~--~~~~~~ 120 (366)
+.+|++++|.|+||||||||++.+++.+.+..|. ++++++. ... . . +...+++.+|+.. +....+
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 107 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARLAPDAGE-VHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVS 107 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE-EEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCcccc
Confidence 7799999999999999999999999998888887 5666654 221 1 1 2345899988763 223333
Q ss_pred HHHHHHH----------------HHHHHhcCCceEEEEec-ccccCCCCccCCccchhhHHHHHHHHHHH----------
Q 017792 121 GEQALSL----------------VDTLIRSGSVDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMSQA---------- 173 (366)
Q Consensus 121 ~e~~l~~----------------~~~~~~~~~~~lvviDs-l~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------- 173 (366)
+.+.+.. +..++.... ++. ...- +...+++ |++|+...||+++..
T Consensus 108 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~~LS~--Gq~qrl~laral~~~p~llllDEPt 179 (258)
T PRK11701 108 AGGNIGERLMAVGARHYGDIRATAGDWLERVE-----IDAARIDD-LPTTFSG--GMQQRLQIARNLVTHPRLVFMDEPT 179 (258)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHcC-----CChhHHhC-CCccCCH--HHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 3332211 111111111 110 1011 1234444 888888888887654
Q ss_pred ----------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ ++.|||+++|.... +..+||.++.|+++.++..
T Consensus 180 ~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~------------------~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 180 GGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV------------------ARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH------------------HHHhcCEEEEEECCEEEEe
Confidence 4454444443 58999999997764 5567899999987765443
No 297
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.29 E-value=6.5e-12 Score=132.26 Aligned_cols=158 Identities=21% Similarity=0.261 Sum_probs=103.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
+++|+.++|+|++|||||||++.+++.+.+..|. +++|+.+..+ ..+++.+++++|+..++.. |+.+++..
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~-I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~~ 553 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS-VFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAPL 553 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE-EEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCCC
Confidence 7899999999999999999999999999998887 6777765432 4678889999998877643 34333321
Q ss_pred ----HHHHHhcCCceEE---EEecccccCCC--CccCCccchhhHHHHHHHHHHH-----------------HHHHHHHh
Q 017792 128 ----VDTLIRSGSVDVV---VVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSL 181 (366)
Q Consensus 128 ----~~~~~~~~~~~lv---viDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l 181 (366)
+...++.-...-. .-+.+...... ..+++ |++|+...||++.+. -+.+...+
T Consensus 554 ~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG--GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L 631 (686)
T TIGR03797 554 TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG--GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESL 631 (686)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 1111111011000 00111122211 23444 899999999988764 23444445
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
++.++|+|+++|..+. +. .||+++.|++++++..|
T Consensus 632 ~~~~~T~IiItHr~~~------------------i~-~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 632 ERLKVTRIVIAHRLST------------------IR-NADRIYVLDAGRVVQQG 666 (686)
T ss_pred HHhCCeEEEEecChHH------------------HH-cCCEEEEEECCEEEEEC
Confidence 5557999999996543 33 38999999887665554
No 298
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.29 E-value=1.1e-11 Score=115.54 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=94.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+ ..|. +++++.... . ..+.+.+++.+|+..++. .++.+.
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 110 (264)
T PRK14243 33 IPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGK-VTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDN 110 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceE-EEECCEEccccccChHHHhhhEEEEccCCcccc-ccHHHH
Confidence 679999999999999999999999987652 4565 567765431 1 244567999999876665 366665
Q ss_pred HHHHHHHHh-----cCC----ceEEE-EecccccC--CCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 125 LSLVDTLIR-----SGS----VDVVV-VDSVAALV--PKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 125 l~~~~~~~~-----~~~----~~lvv-iDsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+........ ... ...+- .+.+.... ....+++ |++|+...||+++..
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 188 (264)
T PRK14243 111 IAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSG--GQQQRLCIARAIAVQPEVILMDEPCSALDPISTL 188 (264)
T ss_pred HHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 543211000 000 00000 00011111 1223444 888888888887653
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
+..+...+.+ +.|||+++|.... +..+||+++.|+
T Consensus 189 ~l~~~L~~~~~-~~tvi~vtH~~~~------------------~~~~~d~v~~l~ 224 (264)
T PRK14243 189 RIEELMHELKE-QYTIIIVTHNMQQ------------------AARVSDMTAFFN 224 (264)
T ss_pred HHHHHHHHHhc-CCEEEEEecCHHH------------------HHHhCCEEEEEe
Confidence 5555555544 5899999997654 567889999987
No 299
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.29 E-value=8.8e-12 Score=106.57 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=105.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC------------CC----HHHHhhcccccCcceecCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA------------LD----PSLAETIGVKTENLLLAQP 118 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~------------~~----~~~~~~ig~~~~~~~~~~~ 118 (366)
-..|+++.|+|.+|||||||++++.-+-.+..|. +.+++|+. .+ +.++.++|+++|++.++..
T Consensus 29 A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~-I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsH 107 (256)
T COG4598 29 ANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGS-IRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSH 107 (256)
T ss_pred cCCCCEEEEecCCCCchhHHHHHHHhhcCCCCce-EEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHH
Confidence 3579999999999999999988776665665554 67777642 11 1346678999999987766
Q ss_pred CCHHHH----------------HHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH---------
Q 017792 119 DCGEQA----------------LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------- 173 (366)
Q Consensus 119 ~~~e~~----------------l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------- 173 (366)
.|+-++ ++....++. .+-++.-...+| ..+++ |++|+..+||+++..
T Consensus 108 mtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~-----kVGi~ek~~~YP-~~LSG--GQQQR~aIARaLameP~vmLFDEP 179 (256)
T COG4598 108 MTVLENVIEAPVHVLGVSKAEAIERAEKYLA-----KVGIAEKADAYP-AHLSG--GQQQRVAIARALAMEPEVMLFDEP 179 (256)
T ss_pred HHHHHHHHhcchHhhcCCHHHHHHHHHHHHH-----HhCchhhhhcCc-cccCc--hHHHHHHHHHHHhcCCceEeecCC
Confidence 554332 333333322 122333333443 56666 899999999988653
Q ss_pred -----------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 174 -----------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 174 -----------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
+.++...|.+.|.|+++++|.+. | ..+.++.+++|.++.+..+|.+
T Consensus 180 TSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~------F------------AR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 180 TSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG------F------------ARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh------H------------HHhhhhheEEeecceecccCCh
Confidence 45556666778999999999664 2 3346788999999876666543
No 300
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.29 E-value=4.2e-12 Score=118.91 Aligned_cols=150 Identities=18% Similarity=0.170 Sum_probs=96.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
|++|++++|+|+||||||||++.+++.+. ..|. +++++..... ..+.+.+++.+|+..+++. ++.+.+...
T Consensus 27 I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~-I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~~ 103 (275)
T cd03289 27 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD-IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGKW 103 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcE-EEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhccCC
Confidence 67999999999999999999999999987 6665 6788765422 3556789999998876643 555544211
Q ss_pred -----HHHHhcCCceEEEEecccccCC----------CCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 129 -----DTLIRSGSVDVVVVDSVAALVP----------KGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 129 -----~~~~~~~~~~lvviDsl~~l~~----------~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
...+.. +-++....-+| ...+++ |++|+...+|+++..
T Consensus 104 ~~~~~~~~l~~-----~gL~~~~~~~p~~l~~~~~~~g~~LS~--G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~ 176 (275)
T cd03289 104 SDEEIWKVAEE-----VGLKSVIEQFPGQLDFVLVDGGCVLSH--GHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176 (275)
T ss_pred CHHHHHHHHHH-----cCCHHHHHhCcccccceecCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHH
Confidence 111111 11111111111 112333 788888888887654
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+. .++|||+++|..+. +. .||+++.|+++.++..
T Consensus 177 l~~~l~~~~-~~~tii~isH~~~~------------------i~-~~dri~vl~~G~i~~~ 217 (275)
T cd03289 177 IRKTLKQAF-ADCTVILSEHRIEA------------------ML-ECQRFLVIEENKVRQY 217 (275)
T ss_pred HHHHHHHhc-CCCEEEEEECCHHH------------------HH-hCCEEEEecCCeEeec
Confidence 444444433 48999999997643 33 3888888887654433
No 301
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=1.1e-11 Score=114.57 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=100.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCC---C-HHHHhhcccccCcceecCCCCHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL---D-PSLAETIGVKTENLLLAQPDCGEQAL 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~---~-~~~~~~ig~~~~~~~~~~~~~~e~~l 125 (366)
+.+|++++|.|+||||||||++.+++...+. .|. +++++.... + ..+.+.++|.+|+..++. .++.+.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l 103 (249)
T PRK14253 26 IPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGK-LTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENV 103 (249)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceE-EEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHH
Confidence 6799999999999999999999999987652 455 566665432 1 244567999999877665 6776665
Q ss_pred HHHHHHHhcC-C----------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH------------------
Q 017792 126 SLVDTLIRSG-S----------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA------------------ 173 (366)
Q Consensus 126 ~~~~~~~~~~-~----------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~------------------ 173 (366)
.......... . ...+-+ +.+.... +...+++ |++++...||+++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 181 (249)
T PRK14253 104 AYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSG--GQQQRLCIARTIAMEPDVILMDEPTSALDPIAT 181 (249)
T ss_pred HhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHH
Confidence 4322110000 0 000000 0010111 1133444 888888888887653
Q ss_pred --HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 --LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 --L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.++...+.+ +.|||+++|.... +..+||+++.|.++.+...+
T Consensus 182 ~~l~~~l~~~~~-~~tii~~sh~~~~------------------~~~~~d~i~~l~~G~i~~~g 226 (249)
T PRK14253 182 HKIEELMEELKK-NYTIVIVTHSMQQ------------------ARRISDRTAFFLMGELVEHD 226 (249)
T ss_pred HHHHHHHHHHhc-CCeEEEEecCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 5555555554 5899999997654 56678999999877655443
No 302
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.29 E-value=9e-12 Score=112.89 Aligned_cols=149 Identities=17% Similarity=0.189 Sum_probs=93.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++... . ..+.+.+++.+|+..++. .++.+.+...
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~ 104 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS-ILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGEY 104 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCE-EEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCCC
Confidence 7799999999999999999999999988888887 556655332 1 345667899998876554 3555443211
Q ss_pred -----HHHHhcCCceEEEEec-cc-------cc--CCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 129 -----DTLIRSGSVDVVVVDS-VA-------AL--VPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 129 -----~~~~~~~~~~lvviDs-l~-------~l--~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
...+.... ++. +. .. .....+++ |++|+...+|+++..
T Consensus 105 ~~~~~~~~~~~~~-----l~~~~~~l~~~l~~~~~~~~~~LS~--G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~ 177 (221)
T cd03244 105 SDEELWQALERVG-----LKEFVESLPGGLDTVVEEGGENLSV--GQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177 (221)
T ss_pred CHHHHHHHHHHhC-----cHHHHHhcccccccccccCCCcCCH--HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHH
Confidence 11100000 111 10 00 01233443 778888888877653
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+.++...+. .+.|||+++|.... +.. ||.++.|.++.+.
T Consensus 178 l~~~l~~~~-~~~tii~~sh~~~~------------------~~~-~d~i~~l~~g~~~ 216 (221)
T cd03244 178 IQKTIREAF-KDCTVLTIAHRLDT------------------IID-SDRILVLDKGRVV 216 (221)
T ss_pred HHHHHHHhc-CCCEEEEEeCCHHH------------------Hhh-CCEEEEEECCeEE
Confidence 444444443 36899999997654 333 7888888776543
No 303
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.29 E-value=5.9e-12 Score=111.46 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=85.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C---HHHHhhcccccCcce--ecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D---PSLAETIGVKTENLL--LAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~---~~~~~~ig~~~~~~~--~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++...+..|. +++++.... . ..+.+.+++.+|+.. ++ +.++.+.+.+
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~tv~~nl~~ 92 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLLRPQSGA-VLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-AADVDQDVAF 92 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcee-EEECCEEccccccchHHHHhhEEEEecChhhccc-cccHHHHHHH
Confidence 7799999999999999999999999988877776 556654331 1 234567899998862 33 3567666543
Q ss_pred HHHHHhc----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
....... .-...+-++...... ...+++ |++|+...+|+++.. +..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~ 169 (190)
T TIGR01166 93 GPLNLGLSEAEVERRVREALTAVGASGLRERP-THCLSG--GEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI 169 (190)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCchhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 2110000 000111111111111 133444 788888888887654 5555
Q ss_pred HHHhhhcCcEEEEEecCCc
Q 017792 178 SHSLSLSQTILIFINQVRA 196 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~ 196 (366)
...+++.++|||+++|..+
T Consensus 170 l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 170 LRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HHHHHHcCCEEEEEeeccc
Confidence 5555566899999999764
No 304
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.29 E-value=1.7e-11 Score=114.43 Aligned_cols=155 Identities=13% Similarity=0.109 Sum_probs=99.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+ ..|. +++++..... ..+.+.+++.+|+..++. .++.+.
T Consensus 43 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 120 (267)
T PRK14237 43 FEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ-ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYEN 120 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE-EEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHH
Confidence 679999999999999999999999998753 4666 5667654321 234567999999876655 477776
Q ss_pred HHHHHHH----------------HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH---------------
Q 017792 125 LSLVDTL----------------IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------- 173 (366)
Q Consensus 125 l~~~~~~----------------~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------- 173 (366)
+...... +....... .++....- +...+++ |++|+...+|++...
T Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~i~~~~~~-~~~~LS~--G~~qrl~laral~~~p~lllLDEPt~~LD~ 196 (267)
T PRK14237 121 ITFALERAGVKDKKVLDEIVETSLKQAALWD-QVKDDLHK-SALTLSG--GQQQRLCIARAIAVKPDILLMDEPASALDP 196 (267)
T ss_pred HHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc-hhhhhhcC-CcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 6542111 00000000 00111111 1234444 888888888887643
Q ss_pred -----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 -----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 -----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...++ .+.+||+++|.... +..+||+++.|..+.+...
T Consensus 197 ~~~~~l~~~l~~~~-~~~tiii~tH~~~~------------------~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 197 ISTMQLEETMFELK-KNYTIIIVTHNMQQ------------------AARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHHHHHHHHHh-cCCEEEEEecCHHH------------------HHHhcCEEEEEECCEEEEe
Confidence 555555554 37899999997654 4557899999987765443
No 305
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.29 E-value=2.3e-11 Score=106.36 Aligned_cols=125 Identities=20% Similarity=0.222 Sum_probs=83.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHH--HHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE--QALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e--~~l~~~~~~~ 132 (366)
+++|++++|+||||||||||++.+++.+.+.+|.+ ++++. .+++.+|+.. .+.- +-+.++..++
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~---------~i~~~~q~~~----LSgGq~qrv~laral~ 87 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND-EWDGI---------TPVYKPQYID----LSGGELQRVAIAAALL 87 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEE-EECCE---------EEEEEcccCC----CCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999988888874 45542 2666666543 3332 3344444444
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccC
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCG 212 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~g 212 (366)
.+++++++|....-+.. ...+.+...++.+. ++.+.|||+++|....
T Consensus 88 --~~p~lllLDEPts~LD~-------------~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~--------------- 134 (177)
T cd03222 88 --RNATFYLFDEPSAYLDI-------------EQRLNAARAIRRLS---EEGKKTALVVEHDLAV--------------- 134 (177)
T ss_pred --cCCCEEEEECCcccCCH-------------HHHHHHHHHHHHHH---HcCCCEEEEEECCHHH---------------
Confidence 36799999998766520 11222333344432 2334899999997754
Q ss_pred CceeeeeceEEEEEEEe
Q 017792 213 GNALKFYASVRLNIKRI 229 (366)
Q Consensus 213 G~~l~~~ad~~i~l~~~ 229 (366)
+..+||.++.|.+.
T Consensus 135 ---~~~~~d~i~~l~~~ 148 (177)
T cd03222 135 ---LDYLSDRIHVFEGE 148 (177)
T ss_pred ---HHHhCCEEEEEcCC
Confidence 45567888777643
No 306
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.29 E-value=1.4e-11 Score=111.88 Aligned_cols=139 Identities=18% Similarity=0.168 Sum_probs=86.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC----CCC--C-HH----HHhhcccccCcceecCCCCHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE----HAL--D-PS----LAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e----~~~--~-~~----~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
+++|++++|+|+||||||||++.+++.+.+..|.+ ++++. ... + .. +.+.+++.+|+..+....++.+
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 109 (224)
T TIGR02324 31 VNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI-LVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALE 109 (224)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHH
Confidence 67999999999999999999999999988888874 55532 111 1 11 2346899999887777777776
Q ss_pred HHHHHHHHHhcC------C----ceEEEEec-ccccCCCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 124 ALSLVDTLIRSG------S----VDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 124 ~l~~~~~~~~~~------~----~~lvviDs-l~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
.+.......... . ...+-++. +... +...+++ |++|+...+|++...
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LS~--G~~qrl~laral~~~p~llllDEPt~~LD~~~~~ 186 (224)
T TIGR02324 110 VVAEPLLERGVPREAARARARELLARLNIPERLWHL-PPATFSG--GEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186 (224)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhC-CcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 654311100000 0 00000110 1111 1233443 788888888877653
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcc
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
+..+...+++.++|||+++|....
T Consensus 187 ~l~~~l~~~~~~g~tii~vsH~~~~ 211 (224)
T TIGR02324 187 VVVELIAEAKARGAALIGIFHDEEV 211 (224)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 555555555568999999997553
No 307
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.28 E-value=5.3e-12 Score=143.08 Aligned_cols=161 Identities=14% Similarity=0.148 Sum_probs=112.2
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
++++|++++|.|+||||||||++.+++...+..|. +++++..... ....+.+|+.+|...+....++.+.+.+...+
T Consensus 1961 ~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~-I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l 2039 (2272)
T TIGR01257 1961 GVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGD-ATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARL 2039 (2272)
T ss_pred EEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccE-EEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHh
Confidence 58899999999999999999999999999888887 5777654432 23456799999998888888998887754322
Q ss_pred HhcC--C--------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 132 IRSG--S--------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 132 ~~~~--~--------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
.... . ...+-++...... ...+++ |++|+...|++++.. +.++...+
T Consensus 2040 ~g~~~~~~~~~v~~lLe~lgL~~~~dk~-~~~LSG--GqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l 2116 (2272)
T TIGR01257 2040 RGVPAEEIEKVANWSIQSLGLSLYADRL-AGTYSG--GNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSI 2116 (2272)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 1000 0 0001111111111 234444 777777777776543 66666666
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
++.|+|||+++|..++ ++.+||+++.|.+++++..|+
T Consensus 2117 ~~~g~TIILtTH~mee------------------~e~lcDrV~IL~~G~i~~~Gs 2153 (2272)
T TIGR01257 2117 IREGRAVVLTSHSMEE------------------CEALCTRLAIMVKGAFQCLGT 2153 (2272)
T ss_pred HhCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEECC
Confidence 6679999999998776 667899999999887766654
No 308
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.28 E-value=7.2e-12 Score=113.60 Aligned_cols=147 Identities=17% Similarity=0.259 Sum_probs=94.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCc---ceecCC----CC----
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTEN---LLLAQP----DC---- 120 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~---~~~~~~----~~---- 120 (366)
-||+|++++++|+||+||||+++.+.+.+.+.+|. +-+.+-.+++ +.+.+++++++.+ +....| ..
T Consensus 46 ~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~-v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~ 124 (325)
T COG4586 46 EIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGK-VRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKL 124 (325)
T ss_pred ecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCe-EEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHH
Confidence 38999999999999999999999999999999887 5566666665 3556666655421 110000 00
Q ss_pred -----HHH---HHHHHHHH--------------------------HhcCCceEEEEecccccCCCCccCCccchhhHHHH
Q 017792 121 -----GEQ---ALSLVDTL--------------------------IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQ 166 (366)
Q Consensus 121 -----~e~---~l~~~~~~--------------------------~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ 166 (366)
..+ -+..+.+. .--+.++++++|..+--.. ..
T Consensus 125 Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLD--------------V~ 190 (325)
T COG4586 125 IYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD--------------VN 190 (325)
T ss_pred HHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcc--------------hh
Confidence 000 01110000 0124577777887654331 11
Q ss_pred HHH-HHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 167 ARL-MSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 167 ar~-l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
|++ +..+++... .++++||++++|+..+ ++.+|++++.++.++.+.+|+
T Consensus 191 aq~~ir~Flke~n---~~~~aTVllTTH~~~d------------------i~~lc~rv~~I~~Gqlv~dg~ 240 (325)
T COG4586 191 AQANIREFLKEYN---EERQATVLLTTHIFDD------------------IATLCDRVLLIDQGQLVFDGT 240 (325)
T ss_pred HHHHHHHHHHHHH---HhhCceEEEEecchhh------------------HHHhhhheEEeeCCcEeeccc
Confidence 221 223333333 5689999999998765 778999999999999888764
No 309
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=9.4e-12 Score=119.49 Aligned_cols=159 Identities=15% Similarity=0.186 Sum_probs=102.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
-|++|++++|+|+||||||||+..+++.... ..|. +++++..... ..+...+++.+|.+.++. .++.+
T Consensus 104 ~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~-I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~e 181 (329)
T PRK14257 104 DIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGE-IYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFD 181 (329)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE-EEECCEEccccccchHhhhccEEEEecCCccCC-CcHHH
Confidence 3789999999999999999999999988753 3565 6677765431 245667999999887664 56666
Q ss_pred HHHHHHHH------------HhcCCceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH---------------
Q 017792 124 ALSLVDTL------------IRSGSVDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA--------------- 173 (366)
Q Consensus 124 ~l~~~~~~------------~~~~~~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------- 173 (366)
.+.+.... ... ..+...+ +.+.... ....+++ |++|+...||++...
T Consensus 182 Ni~~~~~~~~~~~~~~~~~~~~~-~l~~~~L~~~l~~~~~~~~~~LSg--GqkqRl~LARAl~~~p~IlLLDEPts~LD~ 258 (329)
T PRK14257 182 NVAYGPRNNGINDRKILEKIVEK-SLKSAALWDEVKDDLDKAGNALSG--GQQQRLCIARAIALEPEVLLMDEPTSALDP 258 (329)
T ss_pred HHHhHHHhcCCChHHHHHHHHHH-HHHHcCCcchhhhhhhCCcccCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 65532110 000 0000001 1111111 1233444 889999999988764
Q ss_pred -----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 -----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 -----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+..+...+.+ ++|||+++|.... +..+||+++.|..+.++..++
T Consensus 259 ~~~~~i~~~i~~l~~-~~Tii~iTH~l~~------------------i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 259 IATAKIEELILELKK-KYSIIIVTHSMAQ------------------AQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHhc-CCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEeCC
Confidence 5555555544 6999999997654 566799999998876655543
No 310
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.28 E-value=1.3e-11 Score=125.43 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=99.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCC--C--HHHHhhcccccCcc---eecCCCCHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHAL--D--PSLAETIGVKTENL---LLAQPDCGEQALS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~--~--~~~~~~ig~~~~~~---~~~~~~~~e~~l~ 126 (366)
+.+|++++|+|+||||||||++.+++...+ ..|. ++++++... . ..+.+.+|+.+|+. .++...++.+.+.
T Consensus 283 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~ 361 (500)
T TIGR02633 283 LRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN-VFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNIT 361 (500)
T ss_pred EeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeE-EEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhc
Confidence 779999999999999999999999998874 5676 566654432 1 23456789999885 3555566666543
Q ss_pred HHH--HHHh--c-C------C----ceEEEEec-ccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 127 LVD--TLIR--S-G------S----VDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 127 ~~~--~~~~--~-~------~----~~lvviDs-l~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
... .... . . . ...+-+.. .... +...+++ |++|+...||+++..
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSg--Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~ 438 (500)
T TIGR02633 362 LSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFL-PIGRLSG--GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGA 438 (500)
T ss_pred chhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccC-ccccCCH--HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhH
Confidence 311 0000 0 0 0 00111110 0011 1234554 888888888888754
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+..+...+++.|.|||+++|..+. +..+||+++.|.++.+
T Consensus 439 ~~~l~~~l~~l~~~g~tviivsHd~~~------------------~~~~~d~v~~l~~G~i 481 (500)
T TIGR02633 439 KYEIYKLINQLAQEGVAIIVVSSELAE------------------VLGLSDRVLVIGEGKL 481 (500)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEE
Confidence 556666666679999999997765 5667899988876543
No 311
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.28 E-value=5.4e-12 Score=118.13 Aligned_cols=134 Identities=17% Similarity=0.209 Sum_probs=80.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceec--CCCCHHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLA--QPDCGEQALS------ 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~--~~~~~e~~l~------ 126 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++...........+++.+|+..+. .+.++++.+.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~ 108 (272)
T PRK15056 30 VPGGSIAALVGVNGSGKSTLFKALMGFVRLASGK-ISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGH 108 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccc
Confidence 6799999999999999999999999988887786 566665432211223588888775331 1112332211
Q ss_pred -------------HHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 127 -------------LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 127 -------------~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
.+...+.... +.....-. ...+++ |++|+...+|+++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g-----l~~~~~~~-~~~LSg--G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~ 180 (272)
T PRK15056 109 MGWLRRAKKRDRQIVTAALARVD-----MVEFRHRQ-IGELSG--GQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEAR 180 (272)
T ss_pred cccccCCCHHHHHHHHHHHHHcC-----ChhHhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 1111111111 11111111 133444 778888888777643
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcc
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
+..+...+++.++|||+++|..+.
T Consensus 181 l~~~L~~~~~~g~tviivsH~~~~ 204 (272)
T PRK15056 181 IISLLRELRDEGKTMLVSTHNLGS 204 (272)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHH
Confidence 555555555568999999997654
No 312
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1.1e-11 Score=115.84 Aligned_cols=152 Identities=15% Similarity=0.208 Sum_probs=95.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
|++|++++|+|+||||||||++.+++... +..|. +++++.... + ..+.+.+++.+|+..++. .++.+.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~-v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 113 (269)
T PRK14259 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGR-VLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYEN 113 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE-EEECCEEcccccCCHHHHhhceEEEccCCccch-hhHHHH
Confidence 77999999999999999999999999875 35666 556655321 2 244567999999877665 377766
Q ss_pred HHHHHHHHhcCC---------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 125 LSLVDTLIRSGS---------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~---------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+.+......... ...+-+ +.+.... +...+++ |++|+...+|++...
T Consensus 114 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~--G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~ 191 (269)
T PRK14259 114 IAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSG--GQQQRLCIARTIAIEPEVILMDEPCSALDPISTL 191 (269)
T ss_pred HhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 653221100000 000000 0000111 1133443 788888888877654
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
+..+...+++ +.|||+++|.... +..+||+++.|.++
T Consensus 192 ~l~~~l~~~~~-~~tiiivtH~~~~------------------~~~~~d~i~~l~~~ 229 (269)
T PRK14259 192 KIEETMHELKK-NFTIVIVTHNMQQ------------------AVRVSDMTAFFNAE 229 (269)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHH------------------HHHhcCEEEEEecc
Confidence 5555555543 6899999997654 56678999999863
No 313
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=2.3e-11 Score=112.92 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=98.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeE-----EEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYC-----VFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~v-----l~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~ 126 (366)
+.+|++++|+|+||||||||++.+++...+..|.+ +++++.... . ..+...+++.+|+..++...++.+.+.
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~ 112 (257)
T PRK14246 33 IPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIA 112 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHH
Confidence 66999999999999999999999999888776532 333333322 1 234567899999887776667777665
Q ss_pred HHHHH----------------HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 127 LVDTL----------------IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 127 ~~~~~----------------~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
..... ++.....-.+.+.... . ...+++ |++++...+|++...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~-~~~LS~--G~~qrl~laral~~~P~llllDEPt~~LD~~~ 188 (257)
T PRK14246 113 YPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNS-P-ASQLSG--GQQQRLTIARALALKPKVLLMDEPTSMIDIVN 188 (257)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcC-C-cccCCH--HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHH
Confidence 33211 0000000000000111 1 123333 788888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+++ ++|||+++|.... +..+||+++.|..+++...
T Consensus 189 ~~~l~~~l~~~~~-~~tiilvsh~~~~------------------~~~~~d~v~~l~~g~i~~~ 233 (257)
T PRK14246 189 SQAIEKLITELKN-EIAIVIVSHNPQQ------------------VARVADYVAFLYNGELVEW 233 (257)
T ss_pred HHHHHHHHHHHhc-CcEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 5555555543 6999999997654 4457888888887654443
No 314
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1.4e-11 Score=116.09 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=95.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
|.+|++++|+|+||||||||++.+++... +..|. ++++++... + ..+.+.+++.+|+..++.. ++.+.
T Consensus 62 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~-I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~en 139 (285)
T PRK14254 62 IPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGE-LTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDN 139 (285)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceE-EEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHH
Confidence 67999999999999999999999998875 34665 566665432 1 2445678999998766654 77766
Q ss_pred HHHHHHHHhcC-----C----ceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 125 LSLVDTLIRSG-----S----VDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~-----~----~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+.......... . ...+-+. .+.... +...+++ |++|+...||+++..
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSg--Ge~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~ 217 (285)
T PRK14254 140 VAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSG--GQQQRLCIARAIAPDPEVILMDEPASALDPVATS 217 (285)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHH
Confidence 65422110000 0 0000000 000011 1234444 888888888887743
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEE-EEEEecee
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRL-NIKRIGLV 232 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i-~l~~~~~~ 232 (366)
+..+...+.+ +.|||+++|.... +..+||+++ .|.++.++
T Consensus 218 ~l~~~L~~~~~-~~tiii~tH~~~~------------------i~~~~dri~v~l~~G~i~ 259 (285)
T PRK14254 218 KIEDLIEELAE-EYTVVIVTHNMQQ------------------AARISDKTAVFLTGGELV 259 (285)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHH------------------HHhhcCEEEEEeeCCEEE
Confidence 5555555544 4899999997654 455778754 45665443
No 315
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.28 E-value=7.3e-12 Score=130.39 Aligned_cols=155 Identities=22% Similarity=0.290 Sum_probs=101.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCC-----------C
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP-----------D 119 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~-----------~ 119 (366)
-|++|+.++|+|+||||||||++.+.+.+.+..|. +++|+-+..+ ..+++.+|+++|+..++.. .
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~-I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~ 573 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR-ILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE 573 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCC
Confidence 48999999999999999999999999999999887 6777765433 4778999999998766532 2
Q ss_pred -CHHHHHHHHHH-----HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 120 -CGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 120 -~~e~~l~~~~~-----~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+.++++..+.. .+...... .|..-.-. ...++| |++|+...||++...
T Consensus 574 ~~~e~i~~A~~~ag~~~fI~~lP~g---y~t~v~E~-G~~LSG--GQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~ 647 (709)
T COG2274 574 ATDEEIIEAAQLAGAHEFIENLPMG---YDTPVGEG-GANLSG--GQRQRLALARALLSKPKILLLDEATSALDPETEAI 647 (709)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccc---cccccccC-CCCCCH--HHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHH
Confidence 33444443321 11111000 01000000 223444 777777777776543
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+..|.+. ..|+|+|+++|...- -..||+++.|++++++.+|.
T Consensus 648 I~~~L~~~--~~~~T~I~IaHRl~t-------------------i~~adrIiVl~~Gkiv~~gs 690 (709)
T COG2274 648 ILQNLLQI--LQGRTVIIIAHRLST-------------------IRSADRIIVLDQGKIVEQGS 690 (709)
T ss_pred HHHHHHHH--hcCCeEEEEEccchH-------------------hhhccEEEEccCCceeccCC
Confidence 3333322 147999999996543 34589999999988777764
No 316
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.28 E-value=2e-11 Score=111.41 Aligned_cols=146 Identities=17% Similarity=0.273 Sum_probs=98.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----------HHHHhhcccccCcceec-CCCCHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----------PSLAETIGVKTENLLLA-QPDCGE 122 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----------~~~~~~ig~~~~~~~~~-~~~~~e 122 (366)
-+.+|++++|+|+|||||||+++.++++..+.+|. +++++.+... ..+.+.+|...+.+.-+ +..+.-
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~-i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGE-ILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCce-EEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 37899999999999999999999999999999887 5666554211 12345566443333222 223333
Q ss_pred --HHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccc
Q 017792 123 --QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLST 200 (366)
Q Consensus 123 --~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~ 200 (366)
|-+.+++.+. .+++++|.|...+++. .+ .||+ +...|..|. ++.|.+.+||+|+...
T Consensus 114 QrQRi~IARALa--l~P~liV~DEpvSaLD----------vS--iqaq-IlnLL~dlq---~~~~lt~lFIsHDL~v--- 172 (268)
T COG4608 114 QRQRIGIARALA--LNPKLIVADEPVSALD----------VS--VQAQ-ILNLLKDLQ---EELGLTYLFISHDLSV--- 172 (268)
T ss_pred hhhhHHHHHHHh--hCCcEEEecCchhhcc----------hh--HHHH-HHHHHHHHH---HHhCCeEEEEEEEHHh---
Confidence 3344444443 4689999998877762 11 2222 334455555 4569999999997764
Q ss_pred ccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 201 FGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 201 ~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++||++..|..+.++..+.
T Consensus 173 ---------------v~~isdri~VMy~G~iVE~g~ 193 (268)
T COG4608 173 ---------------VRYISDRIAVMYLGKIVEIGP 193 (268)
T ss_pred ---------------hhhhcccEEEEecCceeEecC
Confidence 678899999999887766653
No 317
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.27 E-value=1.4e-11 Score=126.90 Aligned_cols=158 Identities=21% Similarity=0.270 Sum_probs=103.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHH-------
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQ------- 123 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~------- 123 (366)
-+++|+.++|+||+||||||+++.+++.+.+..|. +++|+.+..+ ..+++++++++|++.++. .|+.+
T Consensus 351 ~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~-I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~ 428 (567)
T COG1132 351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGE-ILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP 428 (567)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCe-EEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC
Confidence 38899999999999999999999999999998886 5567654433 578899999999887776 33333
Q ss_pred ------HHHHHHHHHhcCCceEEEEecccccCCC--CccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 124 ------ALSLVDTLIRSGSVDVVVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 124 ------~l~~~~~~~~~~~~~lvviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
+.+.+... ...+.-.-.-+.+...... ..+++ |++|+...||++.+. +.
T Consensus 429 ~at~eei~~a~k~a-~~~d~I~~lp~g~dt~vge~G~~LSg--GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~ 505 (567)
T COG1132 429 DATDEEIEEALKLA-NAHEFIANLPDGYDTIVGERGVNLSG--GQRQRLAIARALLRNPPILILDEATSALDTETEALIQ 505 (567)
T ss_pred CCCHHHHHHHHHHh-ChHHHHHhCcccccceecCCCccCCH--HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHH
Confidence 33332221 0000000001122222221 23444 899999999998764 33
Q ss_pred HHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 176 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+....+. .+.|+|+|+|..+. +.+ ||.++.|+++++...|+
T Consensus 506 ~~l~~l~-~~rT~iiIaHRlst------------------i~~-aD~IiVl~~G~i~e~G~ 546 (567)
T COG1132 506 DALKKLL-KGRTTLIIAHRLST------------------IKN-ADRIIVLDNGRIVERGT 546 (567)
T ss_pred HHHHHHh-cCCEEEEEeccHhH------------------HHh-CCEEEEEECCEEEEecC
Confidence 3333333 45688889996543 455 89999999988666654
No 318
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.27 E-value=1.4e-11 Score=125.31 Aligned_cols=158 Identities=15% Similarity=0.207 Sum_probs=99.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CH--HHHhhcccccCcc---eecCCCCHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP--SLAETIGVKTENL---LLAQPDCGEQALS 126 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~--~~~~~ig~~~~~~---~~~~~~~~e~~l~ 126 (366)
-+++|++++|+||||||||||++.+++...+..|. +++++.... .. .+...++|.+|+. .++...++.+.+.
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~ 363 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTELAETLYGLRPARGGR-IMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVC 363 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcE-EEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHH
Confidence 36799999999999999999999999988777776 556654322 11 2234688888864 2444556555432
Q ss_pred HHH-H-H-H--hcCC--------ceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 127 LVD-T-L-I--RSGS--------VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 127 ~~~-~-~-~--~~~~--------~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
... . . . .... ...+-+. ..... +...+++ |++|+...||+++..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSg--G~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~ 440 (510)
T PRK15439 364 ALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQ-AARTLSG--GNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARN 440 (510)
T ss_pred hhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccC-ccccCCc--HHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHH
Confidence 110 0 0 0 0000 0001111 11111 1234555 888888888887754
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.++...+.+.+.|||+++|..+. +..+||+++.|.++.++.
T Consensus 441 ~l~~~l~~l~~~g~tiIivsHd~~~------------------i~~~~d~i~~l~~G~i~~ 483 (510)
T PRK15439 441 DIYQLIRSIAAQNVAVLFISSDLEE------------------IEQMADRVLVMHQGEISG 483 (510)
T ss_pred HHHHHHHHHHhCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 556666666679999999998765 566789999988765443
No 319
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.27 E-value=1.6e-11 Score=125.24 Aligned_cols=156 Identities=12% Similarity=0.166 Sum_probs=95.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEe-----------------------CCCC-------C--C-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFID-----------------------AEHA-------L--D- 99 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~--~~~gg~vl~id-----------------------~e~~-------~--~- 99 (366)
+.+|++++|+||||||||||++.+++.. .+..|.+ +++ +... . .
T Consensus 23 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i-~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 101 (520)
T TIGR03269 23 IEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI-IYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSD 101 (520)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEE-EEeccccccccccccccccccccccccccccccchhhhccCH
Confidence 6799999999999999999999999986 4667764 443 1100 0 1
Q ss_pred ---HHHHhhcccccCc-ceecCCCCHHHHHHHHHHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHH
Q 017792 100 ---PSLAETIGVKTEN-LLLAQPDCGEQALSLVDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAM 165 (366)
Q Consensus 100 ---~~~~~~ig~~~~~-~~~~~~~~~e~~l~~~~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~ 165 (366)
..+.+.+++.+|+ ..++...++.+.+.+........ -...+-++....-. ...+++ |++|+..
T Consensus 102 ~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSg--Gq~qrv~ 178 (520)
T TIGR03269 102 KLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHI-ARDLSG--GEKQRVV 178 (520)
T ss_pred HHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-cccCCH--HHHHHHH
Confidence 1234568999997 45556567766654321110000 01111122221111 245555 8889888
Q ss_pred HHHHHHHH--------------------HHHHHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEE
Q 017792 166 QARLMSQA--------------------LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRL 224 (366)
Q Consensus 166 ~ar~l~~~--------------------L~~L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i 224 (366)
.||+++.. +..+...+ ++.+.|||+++|.... +..+||+++
T Consensus 179 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~------------------~~~~~d~i~ 240 (520)
T TIGR03269 179 LARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV------------------IEDLSDKAI 240 (520)
T ss_pred HHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH------------------HHHhcCEEE
Confidence 88888754 44444444 4468999999998765 444567777
Q ss_pred EEEEecee
Q 017792 225 NIKRIGLV 232 (366)
Q Consensus 225 ~l~~~~~~ 232 (366)
.|+++.++
T Consensus 241 ~l~~G~i~ 248 (520)
T TIGR03269 241 WLENGEIK 248 (520)
T ss_pred EEeCCEEe
Confidence 77665544
No 320
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1.2e-11 Score=115.06 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=95.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+. +|. ++++++... . ..+.+.+++.+++..++. .++.+.
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~en 107 (261)
T PRK14258 30 IYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGR-VEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDN 107 (261)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccce-EEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHH
Confidence 6799999999999999999999999998764 455 556654421 1 234566899888876655 677666
Q ss_pred HHHHHHHHhc-C--C--------ceEEEE-ecccccCC--CCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRS-G--S--------VDVVVV-DSVAALVP--KGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~-~--~--------~~lvvi-Dsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+......... . . ...+-+ +.+..+.. ...+++ |++++...||+++..
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg--Gq~qrv~laral~~~p~vllLDEP~~~LD~~~ 185 (261)
T PRK14258 108 VAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSG--GQQQRLCIARALAVKPKVLLMDEPCFGLDPIA 185 (261)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 5432111000 0 0 000000 00111111 133444 888888888887654
Q ss_pred ---HHHHHHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 174 ---LRKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 174 ---L~~L~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
+.++...++ +.+.|||+++|.... +..+||+++.|+.
T Consensus 186 ~~~l~~~l~~l~~~~~~tiiivsH~~~~------------------i~~~~d~i~~l~~ 226 (261)
T PRK14258 186 SMKVESLIQSLRLRSELTMVIVSHNLHQ------------------VSRLSDFTAFFKG 226 (261)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCHHH------------------HHHhcCEEEEEcc
Confidence 445444443 358999999997764 5667899999986
No 321
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.27 E-value=2.2e-11 Score=112.74 Aligned_cols=153 Identities=17% Similarity=0.143 Sum_probs=93.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC-----CC--CH-H----HHhhcccccCcce--ecCCCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH-----AL--DP-S----LAETIGVKTENLL--LAQPDC 120 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~-----~~--~~-~----~~~~ig~~~~~~~--~~~~~~ 120 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++. .. .. . +.+.+++.+|+.. +....+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 104 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGT-ATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVS 104 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCcccc
Confidence 7799999999999999999999999998888787 4556543 21 11 1 1245888888753 222233
Q ss_pred HHHHHHH----------------HHHHHhcCCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH----------
Q 017792 121 GEQALSL----------------VDTLIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA---------- 173 (366)
Q Consensus 121 ~e~~l~~----------------~~~~~~~~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------- 173 (366)
+.+.+.. +..++.... ++ ...... ...+++ |++|+...||+++..
T Consensus 105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~-----l~~~~~~~~-~~~LSg--G~~qrv~laral~~~p~vlllDEP~ 176 (253)
T TIGR02323 105 AGANIGERLMAIGARHYGNIRAAAHDWLEEVE-----IDPTRIDDL-PRAFSG--GMQQRLQIARNLVTRPRLVFMDEPT 176 (253)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHcC-----CChhhhhcC-chhcCH--HHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 3332211 011111111 11 011111 233444 888888888887664
Q ss_pred ----------HHHHHHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----------LRKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----------L~~L~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+. +.+.|||+++|.... +..+||+++.|.++.+...
T Consensus 177 ~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~------------------~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 177 GGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGV------------------ARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhcCEEEEEECCEEEEE
Confidence 444444443 458999999997654 5557888888887655443
No 322
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.27 E-value=7.5e-12 Score=127.91 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=102.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---H---HHHhhcccccCcc--eecCCCCHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENL--LLAQPDCGEQAL 125 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~---~~~~~ig~~~~~~--~~~~~~~~e~~l 125 (366)
-+++|++++|+||||||||||++.+++... ..|. +++++..... . .+.+.+++.+|+. .++...++.+.+
T Consensus 308 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~-i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l 385 (529)
T PRK15134 308 TLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGE-IWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQII 385 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcE-EEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHH
Confidence 477999999999999999999999998874 6665 6676654321 1 2345689999986 355566777766
Q ss_pred HHHHHHHh----cC----C----ceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 126 SLVDTLIR----SG----S----VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 126 ~~~~~~~~----~~----~----~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
........ .. . ...+-+. ..... +...+++ |++|+...||+++..
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 462 (529)
T PRK15134 386 EEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHR-YPAEFSG--GQRQRIAIARALILKPSLIILDEPTSSLDKTVQA 462 (529)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhc-CCccCCH--HHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHH
Confidence 54211100 00 0 0111111 11111 1244555 888888888887654
Q ss_pred -HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 -LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 -L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+.+ .++|||+++|.... +..+||+++.|++++++..
T Consensus 463 ~l~~~l~~~~~~~~~tvi~vsHd~~~------------------~~~~~d~i~~l~~G~i~~~ 507 (529)
T PRK15134 463 QILALLKSLQQKHQLAYLFISHDLHV------------------VRALCHQVIVLRQGEVVEQ 507 (529)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHHH------------------HHHhcCeEEEEECCEEEEE
Confidence 5555555544 58999999997764 5567899999987765444
No 323
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.26 E-value=8e-12 Score=113.07 Aligned_cols=138 Identities=18% Similarity=0.262 Sum_probs=86.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|.|+||||||||++.+++...+..|. ++++++.... ..+.+.+++.+|+..++ +.++.+.+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~ 101 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGK-VHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITF 101 (218)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCe-EEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHhh
Confidence 6799999999999999999999999998887786 5666654321 12335689999987665 4566665543
Q ss_pred HHH----HHhcCCceEEEEec-cccc---------CCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 128 VDT----LIRSGSVDVVVVDS-VAAL---------VPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 128 ~~~----~~~~~~~~lvviDs-l~~l---------~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
... .... ....+-+.. +... .+...+++ |++|+...||+++..
T Consensus 102 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~ 178 (218)
T cd03290 102 GSPFNKQRYKA-VTDACSLQPDIDLLPFGDQTEIGERGINLSG--GQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178 (218)
T ss_pred cCcCCHHHHHH-HHHHhCcHHHHHhCcCccccCcccCCCcCCH--HHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHH
Confidence 110 0000 000000111 0000 01133444 888888888887764
Q ss_pred HHH--HHHHhhhcCcEEEEEecCCcc
Q 017792 174 LRK--LSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 174 L~~--L~~~l~~~~~tVI~i~h~~~~ 197 (366)
+.+ +...+++.+.|||+++|....
T Consensus 179 l~~~~ll~~~~~~~~tii~~sH~~~~ 204 (218)
T cd03290 179 LMQEGILKFLQDDKRTLVLVTHKLQY 204 (218)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCChHH
Confidence 333 555666678999999997653
No 324
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.26 E-value=1.3e-11 Score=127.79 Aligned_cols=151 Identities=17% Similarity=0.196 Sum_probs=98.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCC------------C
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP------------D 119 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~------------~ 119 (366)
+++|+.++|+|++|||||||+..+++.+ +..|. +++++.+..+ ..+++.+++++|++.+++. .
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~-I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~ 450 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS-LKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDA 450 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcE-EEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCC
Confidence 6899999999999999999999999999 77776 6777654332 4678899999998876543 2
Q ss_pred CHHHHHHHHHH-----HHhcCCceEEEEecccccCCC--CccCCccchhhHHHHHHHHHHH-------------------
Q 017792 120 CGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 120 ~~e~~l~~~~~-----~~~~~~~~lvviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+-+++.+.+.. .+... -|.+...... ..+++ |++|+...||++.+.
T Consensus 451 ~~eei~~al~~a~l~~~i~~l------p~G~dT~vge~G~~LSG--GQrQRialARAll~~~~IliLDE~TSaLD~~te~ 522 (588)
T PRK11174 451 SDEQLQQALENAWVSEFLPLL------PQGLDTPIGDQAAGLSV--GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQ 522 (588)
T ss_pred CHHHHHHHHHHhCHHHHHHhc------ccccccccccCCCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 22333332221 11111 1122222222 23454 899999999988764
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+....+ ..+.|+|+++|..+. + ..||.++.|+++++...|
T Consensus 523 ~i~~~l~~~-~~~~TvIiItHrl~~------------------i-~~aD~Iivl~~G~i~e~G 565 (588)
T PRK11174 523 LVMQALNAA-SRRQTTLMVTHQLED------------------L-AQWDQIWVMQDGQIVQQG 565 (588)
T ss_pred HHHHHHHHH-hCCCEEEEEecChHH------------------H-HhCCEEEEEeCCeEeecC
Confidence 22222222 248999999996643 2 248999999877655444
No 325
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.26 E-value=1.1e-11 Score=114.86 Aligned_cols=158 Identities=15% Similarity=0.136 Sum_probs=94.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEeCCCCCCH-HHHhhcccccCcce--ecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHALDP-SLAETIGVKTENLL--LAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~----~gg~vl~id~e~~~~~-~~~~~ig~~~~~~~--~~~~~~~e~~l~~ 127 (366)
+++|++++|+|+||||||||++.+++...+ ..|. +++++...... .+.+.+++.+|+.. +....++.+.+..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~-i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~ 104 (254)
T PRK10418 26 LQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGR-VLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARE 104 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCE-EEECCeeccccccccceEEEEecCCccccCccccHHHHHHH
Confidence 679999999999999999999999998877 6676 56666543222 22356899998863 2233344333221
Q ss_pred HHHHHhcCC--------ceEEEEecccccC--CCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRSGS--------VDVVVVDSVAALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~~~--------~~lvviDsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
......... .+.+-++....+. ....+++ |++|+...||+++.. +..+
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~--Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~ 182 (254)
T PRK10418 105 TCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSG--GMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDL 182 (254)
T ss_pred HHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCH--HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHH
Confidence 100000000 0000011100000 0133443 888888888877653 4444
Q ss_pred HHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 178 SHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 178 ~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
...+. +.++|||+++|..+. +..+||+++.|.++.+..
T Consensus 183 L~~~~~~~g~til~~sH~~~~------------------~~~~~d~v~~l~~G~i~~ 221 (254)
T PRK10418 183 LESIVQKRALGMLLVTHDMGV------------------VARLADDVAVMSHGRIVE 221 (254)
T ss_pred HHHHHHhcCcEEEEEecCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 44443 358999999997654 455788888888765443
No 326
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=2e-11 Score=113.50 Aligned_cols=150 Identities=15% Similarity=0.151 Sum_probs=95.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+.+|++++|+|+||||||||++.+++.+.+. .|. +++++.... . ..+...+++.+|+..++. .++.+.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 107 (259)
T PRK14260 30 IYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGV-VDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYEN 107 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceE-EEECCEeccccccchHhhhhheEEEecccccCC-ccHHHH
Confidence 6799999999999999999999999987642 465 566665332 1 234567999999887665 677776
Q ss_pred HHHHHHHHhc-C--C--------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRS-G--S--------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~-~--~--------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+......... . . ...+-+ +.+.... ....+++ |++++...||+++..
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~--G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 185 (259)
T PRK14260 108 VAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSG--GQQQRLCIARALAIKPKVLLMDEPCSALDPIA 185 (259)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 6432111000 0 0 000000 0001111 1234444 888888888887643
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
+.++...+++ ++|||+++|..+. +..+||+++.|+
T Consensus 186 ~~~l~~~l~~~~~-~~tiii~tH~~~~------------------i~~~~d~i~~l~ 223 (259)
T PRK14260 186 TMKVEELIHSLRS-ELTIAIVTHNMQQ------------------ATRVSDFTAFFS 223 (259)
T ss_pred HHHHHHHHHHHhc-CCEEEEEeCCHHH------------------HHHhcCeEEEEe
Confidence 5555555544 6899999997765 566789888886
No 327
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=1.5e-11 Score=114.60 Aligned_cols=158 Identities=13% Similarity=0.132 Sum_probs=97.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCC------C-HHHHhhcccccCcceecCCCCHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL------D-PSLAETIGVKTENLLLAQPDCGE 122 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~------~-~~~~~~ig~~~~~~~~~~~~~~e 122 (366)
+.+|++++|+|+||||||||++.+++...+ ..|. +++++.... . ..+...+++.+|+..++.. ++.
T Consensus 39 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~-i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~ 116 (265)
T PRK14252 39 VHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGE-IILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIF 116 (265)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccE-EEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHH
Confidence 679999999999999999999999988764 3565 556654321 1 2345678999998776654 666
Q ss_pred HHHHHHHHHH--------hcC---CceEEEE-ecccccCC--CCccCCccchhhHHHHHHHHHHH---------------
Q 017792 123 QALSLVDTLI--------RSG---SVDVVVV-DSVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------- 173 (366)
Q Consensus 123 ~~l~~~~~~~--------~~~---~~~lvvi-Dsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------- 173 (366)
+.+....... ... ....+-+ +.+..... ...+++ |++++...+|++...
T Consensus 117 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEPt~gLD~ 194 (265)
T PRK14252 117 ENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSG--GQQQRLCIARALATDPEILLFDEPTSALDP 194 (265)
T ss_pred HHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCccCCH
Confidence 6654321100 000 0000000 00111110 123443 788888888877654
Q ss_pred -----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 -----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 -----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+...+++ ++|||+++|..+. +..+||+++.|+++.+...+
T Consensus 195 ~~~~~l~~~l~~l~~-~~tiiivth~~~~------------------~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 195 IATASIEELISDLKN-KVTILIVTHNMQQ------------------AARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred HHHHHHHHHHHHHHh-CCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 5555555544 6899999997654 55678999999876654443
No 328
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.26 E-value=5.2e-12 Score=121.18 Aligned_cols=151 Identities=16% Similarity=0.228 Sum_probs=99.4
Q ss_pred EEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc-------
Q 017792 63 IYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS------- 134 (366)
Q Consensus 63 I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~------- 134 (366)
|+||||||||||++.+++...+..|. ++++++.... ....+.+++.+|+..++...++.+++.+.......
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~-I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGS-IMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 58999999999999999998888887 5666654322 23456799999998888778888877653211000
Q ss_pred ---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-hcCcEEEE
Q 017792 135 ---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS-LSQTILIF 190 (366)
Q Consensus 135 ---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~-~~~~tVI~ 190 (366)
.-...+-++....-. ...+++ |++|+...||+++.. ++.+...+. +.++|||+
T Consensus 80 ~~~~~l~~~~l~~~~~~~-~~~LSg--Gq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiii 156 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRK-PHQLSG--GQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF 156 (325)
T ss_pred HHHHHHHHcCCcchhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 001111112111111 234554 888888889888764 555554443 45999999
Q ss_pred EecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 191 INQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 191 i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
++|...+ +..+||+++.|+++.+...+
T Consensus 157 vTHd~~e------------------~~~~~d~i~vl~~G~i~~~g 183 (325)
T TIGR01187 157 VTHDQEE------------------AMTMSDRIAIMRKGKIAQIG 183 (325)
T ss_pred EeCCHHH------------------HHHhCCEEEEEECCEEEEEc
Confidence 9997765 45578888888877765543
No 329
>PLN03211 ABC transporter G-25; Provisional
Probab=99.26 E-value=2e-11 Score=127.30 Aligned_cols=163 Identities=18% Similarity=0.193 Sum_probs=109.1
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~--gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+=+++|++++|.||||||||||++.+++...+. .|. ++++++... ....+++++++|+..+....|+.+.+.+...
T Consensus 89 ~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~-I~inG~~~~-~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~ 166 (659)
T PLN03211 89 GMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGT-ILANNRKPT-KQILKRTGFVTQDDILYPHLTVRETLVFCSL 166 (659)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEE-EEECCEECc-hhhccceEEECcccccCCcCCHHHHHHHHHH
Confidence 458999999999999999999999999887653 565 667765432 3344679999999888878899888776432
Q ss_pred HHhcCC--c--eEEEEecccc---c-------C---CCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 131 LIRSGS--V--DVVVVDSVAA---L-------V---PKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 131 ~~~~~~--~--~lvviDsl~~---l-------~---~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+..... . ..-.++.+.. + . ....+++ |++++...|+++...
T Consensus 167 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSg--GerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~ 244 (659)
T PLN03211 167 LRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISG--GERKRVSIAHEMLINPSLLILDEPTSGLDATAAYR 244 (659)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcCh--hhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHH
Confidence 210000 0 0000111110 0 0 0123554 889999999888753
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++.+.+.+.|.|||+++|..+. .+..++|.++.|.+++.+..|+
T Consensus 245 l~~~L~~l~~~g~TvI~~sH~~~~-----------------~i~~~~D~iilL~~G~iv~~G~ 290 (659)
T PLN03211 245 LVLTLGSLAQKGKTIVTSMHQPSS-----------------RVYQMFDSVLVLSEGRCLFFGK 290 (659)
T ss_pred HHHHHHHHHhCCCEEEEEecCCCH-----------------HHHHhhceEEEecCCcEEEECC
Confidence 555555555679999999997642 0446789999998887766654
No 330
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.25 E-value=3e-11 Score=125.16 Aligned_cols=157 Identities=17% Similarity=0.221 Sum_probs=99.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|+.++|+|++|||||||++.+++.+.+.+|. +++|+.+.. ...+.+.+++.+|++.+++. |+.+++...
T Consensus 364 i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~-I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~~ 441 (592)
T PRK10790 364 VPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE-IRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRDI 441 (592)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce-EEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCCC
Confidence 7899999999999999999999999999998886 677765432 24778899999999887754 444333221
Q ss_pred -----HHHHhcCCce-EE--EEecccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 -----DTLIRSGSVD-VV--VVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 -----~~~~~~~~~~-lv--viDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
...++.-... .+ .-+.+..... ...+++ |++|+...||++.+. +.+..
T Consensus 442 ~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSG--GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l 519 (592)
T PRK10790 442 SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV--GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL 519 (592)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 1111110000 00 0011111111 123444 899999999988764 32223
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
..+. .++|+|+++|.... +. .||.++.|+++++...|
T Consensus 520 ~~~~-~~~tvIivtHr~~~------------------l~-~~D~ii~l~~G~i~~~G 556 (592)
T PRK10790 520 AAVR-EHTTLVVIAHRLST------------------IV-EADTILVLHRGQAVEQG 556 (592)
T ss_pred HHHh-CCCEEEEEecchHH------------------HH-hCCEEEEEECCEEEEEc
Confidence 2222 37999999996542 22 48999999877654433
No 331
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.25 E-value=2.8e-11 Score=125.18 Aligned_cols=151 Identities=19% Similarity=0.254 Sum_probs=99.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHH-----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALS----- 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~----- 126 (366)
+++|+.++|+|+||||||||++.+++.+.+..|. +++++.+..+ ..+.+.+++.+|+..+++. |+.+++.
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~-I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~ 443 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE-ILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYARTE 443 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhccCCCCce-EEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCCCC
Confidence 6899999999999999999999999999998887 6777654322 4678889999998876642 3333322
Q ss_pred ---------HHHH-----HHhcCCceEEEEecccccCC--CCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 127 ---------LVDT-----LIRSGSVDVVVVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 127 ---------~~~~-----~~~~~~~~lvviDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
.+.. .+.... +.+..... ...+++ |++|+...||++.+.
T Consensus 444 ~~~~~~i~~al~~~~l~~~i~~lp------~Gldt~ig~~g~~LSG--GqrQRi~LARall~~~~ililDEptsaLD~~t 515 (582)
T PRK11176 444 QYSREQIEEAARMAYAMDFINKMD------NGLDTVIGENGVLLSG--GQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_pred CCCHHHHHHHHHHhCcHHHHHhcc------cccCceeCCCCCcCCH--HHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 2111 111111 11111111 133554 899999999998774
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+....+ ..++|+|+++|..+ ....||+++.|+++++...|
T Consensus 516 ~~~i~~~l~~~-~~~~tvI~VtHr~~-------------------~~~~~D~Ii~l~~g~i~e~g 560 (582)
T PRK11176 516 ERAIQAALDEL-QKNRTSLVIAHRLS-------------------TIEKADEILVVEDGEIVERG 560 (582)
T ss_pred HHHHHHHHHHH-hCCCEEEEEecchH-------------------HHHhCCEEEEEECCEEEEeC
Confidence 22222222 24799999999653 23348999999887655444
No 332
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.24 E-value=1.8e-11 Score=111.33 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=93.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++... . ..+.+.+++.+|+..++. .++.+.+....
T Consensus 37 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~ 114 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQ-VLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQS 114 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcE-EEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCC
Confidence 6799999999999999999999999998888887 666765432 1 234567899988876543 35555443210
Q ss_pred -------HHHhcCCc----eEE--EEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 130 -------TLIRSGSV----DVV--VVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 130 -------~~~~~~~~----~lv--viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
........ ..+ -++...... ...+++ |++++...+|+++.. +..
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 191 (226)
T cd03248 115 CSFECVKEAAQKAHAHSFISELASGYDTEVGEK-GSQLSG--GQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQ 191 (226)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccchhhcC-CCcCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 00000000 000 011111111 133443 788888888887654 455
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
+...+.+ +.|||+++|..+. +. .||+++.|.++
T Consensus 192 ~l~~~~~-~~tii~~sh~~~~------------------~~-~~d~i~~l~~g 224 (226)
T cd03248 192 ALYDWPE-RRTVLVIAHRLST------------------VE-RADQILVLDGG 224 (226)
T ss_pred HHHHHcC-CCEEEEEECCHHH------------------HH-hCCEEEEecCC
Confidence 5555544 6899999997654 43 37888887654
No 333
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.24 E-value=2.2e-11 Score=108.33 Aligned_cols=139 Identities=15% Similarity=0.142 Sum_probs=85.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+++|++++|+|+||||||||++.+++...+..|. +++++...... ..+.+++.+++..+....++.+.+.........
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~i~~~-~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~ 100 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGN-IYYKNCNINNI-AKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNS 100 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCcccChh-hhhhEEeccCCcCCCccCCHHHHHHHHHHhccc
Confidence 6799999999999999999999999988888886 56776543221 134577877776555566777665442211000
Q ss_pred C-C----ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcCcEEE
Q 017792 135 G-S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQTILI 189 (366)
Q Consensus 135 ~-~----~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~~tVI 189 (366)
. . ...+-++....- ....+++ |++++...+|+++.. +..+.....+.+.|||
T Consensus 101 ~~~~~~~l~~~~l~~~~~~-~~~~LS~--G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tii 177 (195)
T PRK13541 101 AETLYAAIHYFKLHDLLDE-KCYSLSS--GMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVL 177 (195)
T ss_pred HHHHHHHHHHcCCHhhhcc-ChhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 0 0 000001110000 0123333 777777777776653 4444443445789999
Q ss_pred EEecCCccc
Q 017792 190 FINQVRAKL 198 (366)
Q Consensus 190 ~i~h~~~~~ 198 (366)
+++|....+
T Consensus 178 i~sh~~~~i 186 (195)
T PRK13541 178 LSSHLESSI 186 (195)
T ss_pred EEeCCcccc
Confidence 999987653
No 334
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.24 E-value=8e-12 Score=116.01 Aligned_cols=155 Identities=18% Similarity=0.200 Sum_probs=94.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++. .++.+.+..
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~ 121 (257)
T cd03288 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK-IVIDGIDISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPECKC 121 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCe-EEECCEEhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCCCC
Confidence 6799999999999999999999999988887886 5666654322 345667899998876543 243332211
Q ss_pred ----HHHHHhcCCc----eEE--EEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 ----VDTLIRSGSV----DVV--VVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ----~~~~~~~~~~----~lv--viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
+......... ... -++....- +...+++ |++|+...||+++.. +.++
T Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~-~~~~LS~--G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 198 (257)
T cd03288 122 TDDRLWEALEIAQLKNMVKSLPGGLDAVVTE-GGENFSV--GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKV 198 (257)
T ss_pred CHHHHHHHHHHhCcHHHHhhcccccCcEecc-CCCcCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 0000000000 000 01111000 0123443 788888888877653 4444
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
...+. .++|||+++|.... +.. ||+++.|.+++++..
T Consensus 199 l~~~~-~~~tiii~sh~~~~------------------~~~-~dri~~l~~G~i~~~ 235 (257)
T cd03288 199 VMTAF-ADRTVVTIAHRVST------------------ILD-ADLVLVLSRGILVEC 235 (257)
T ss_pred HHHhc-CCCEEEEEecChHH------------------HHh-CCEEEEEECCEEEEe
Confidence 44443 48999999997654 333 899999987765443
No 335
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=5.1e-11 Score=106.93 Aligned_cols=145 Identities=20% Similarity=0.284 Sum_probs=89.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccC-----ccee---cCCCCH-----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTE-----NLLL---AQPDCG----- 121 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~-----~~~~---~~~~~~----- 121 (366)
+.+|+.++|+|+||||||||++.+++.+.|..|. +.+++.-+ +.+.-..|++++ |+.+ ....+.
T Consensus 50 i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~-v~v~G~v~--~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~ 126 (249)
T COG1134 50 IYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGK-VKVTGKVA--PLIELGAGFDPELTGRENIYLRGLILGLTRKEIDE 126 (249)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCccCCCCce-EEEcceEe--hhhhcccCCCcccchHHHHHHHHHHhCccHHHHHH
Confidence 6799999999999999999999999999998886 44444321 122223333332 1111 011111
Q ss_pred --HHHHHHH----------------------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHH
Q 017792 122 --EQALSLV----------------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 177 (366)
Q Consensus 122 --e~~l~~~----------------------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L 177 (366)
+++.++. -.....-+++++++|.+.+.- +.+ -.+ +.+.++
T Consensus 127 ~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavG----------D~~---F~~---K~~~rl 190 (249)
T COG1134 127 KVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVG----------DAA---FQE---KCLERL 190 (249)
T ss_pred HHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcC----------CHH---HHH---HHHHHH
Confidence 1111111 111223478999999988774 221 111 222233
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
.. +.+.+.|||+++|.... +..+||+.++|+++++...|+.
T Consensus 191 ~e-~~~~~~tiv~VSHd~~~------------------I~~~Cd~~i~l~~G~i~~~G~~ 231 (249)
T COG1134 191 NE-LVEKNKTIVLVSHDLGA------------------IKQYCDRAIWLEHGQIRMEGSP 231 (249)
T ss_pred HH-HHHcCCEEEEEECCHHH------------------HHHhcCeeEEEeCCEEEEcCCH
Confidence 22 23457999999997654 7889999999999987776653
No 336
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.24 E-value=2.5e-11 Score=125.20 Aligned_cols=157 Identities=17% Similarity=0.240 Sum_probs=101.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
+++|+.++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+.+.+++.+|+..+++. |+.+++..
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~ 440 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE-ILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAPN 440 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCCc
Confidence 6899999999999999999999999999988887 6777764332 4677889999998876653 44444321
Q ss_pred -----HHHHHhcCCceEEE--EecccccCCC--CccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 128 -----VDTLIRSGSVDVVV--VDSVAALVPK--GELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 128 -----~~~~~~~~~~~lvv--iDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
+...++.-...-.+ -+.+...... ..+++ |++|+...||++.+. +.+..
T Consensus 441 ~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSg--GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l 518 (574)
T PRK11160 441 ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSG--GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL 518 (574)
T ss_pred cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 11111111111000 1122222211 23444 899999999988764 33333
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
..+. .++|+|+++|..+. + ..||+++.|+++++...|
T Consensus 519 ~~~~-~~~tviiitHr~~~------------------~-~~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 519 AEHA-QNKTVLMITHRLTG------------------L-EQFDRICVMDNGQIIEQG 555 (574)
T ss_pred HHHc-CCCEEEEEecChhH------------------H-HhCCEEEEEeCCeEEEeC
Confidence 3322 48999999996543 2 248999999877655444
No 337
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.24 E-value=1.1e-11 Score=110.89 Aligned_cols=59 Identities=24% Similarity=0.434 Sum_probs=45.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l 125 (366)
+++|++++|.||||||||||++.+++...+..|.+ ++++ ++++.+|++.++ +.++.+.+
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i-~~~g----------~i~~~~q~~~l~-~~t~~enl 86 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV-SVPG----------SIAYVSQEPWIQ-NGTIRENI 86 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE-EEcC----------EEEEEecCchhc-cCcHHHHh
Confidence 77999999999999999999999999988888874 5554 577777776554 33444433
No 338
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.24 E-value=1.7e-11 Score=113.46 Aligned_cols=139 Identities=19% Similarity=0.269 Sum_probs=81.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCC--CCHHHHHHH-----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQP--DCGEQALSL----- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~--~~~e~~l~~----- 127 (366)
+++|++++|+|+||||||||++.+++.+.+..|.+ +++. ...+++.+|+..+... .++.+.+..
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i-~~~~--------~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~ 97 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-KRNG--------KLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTK 97 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECC--------ccCEEEeccccccccccChhHHHHHhcccccc
Confidence 67999999999999999999999999888877764 4443 1246777776544322 133322210
Q ss_pred ---HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh-
Q 017792 128 ---VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL- 183 (366)
Q Consensus 128 ---~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~- 183 (366)
+..++.... +...... +...+++ |++++...||+++.. +.++...+.+
T Consensus 98 ~~~~~~~l~~~g-----l~~~~~~-~~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 169 (251)
T PRK09544 98 KEDILPALKRVQ-----AGHLIDA-PMQKLSG--GETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRE 169 (251)
T ss_pred HHHHHHHHHHcC-----ChHHHhC-ChhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 111111100 0110000 1123333 666666666666543 4444444333
Q ss_pred cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 184 ~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
.++|||+++|..+. +..+||+++.|..
T Consensus 170 ~g~tiiivsH~~~~------------------i~~~~d~i~~l~~ 196 (251)
T PRK09544 170 LDCAVLMVSHDLHL------------------VMAKTDEVLCLNH 196 (251)
T ss_pred cCCEEEEEecCHHH------------------HHHhCCEEEEECC
Confidence 48999999997765 4556788887753
No 339
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.24 E-value=2.6e-11 Score=115.38 Aligned_cols=155 Identities=20% Similarity=0.226 Sum_probs=106.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcce--ecCCCCHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLL--LAQPDCGEQALS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~--~~~~~~~e~~l~ 126 (366)
+.+|+.++|+|++|||||||.+.+..++... |. ++++++.... ..+++++-+++|+++ +.+..++.+++.
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~-I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~ 387 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GE-IRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIE 387 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ce-EEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhh
Confidence 5789999999999999999999999988876 54 6666665432 245677888998875 334456666543
Q ss_pred H-----------------HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 127 L-----------------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 127 ~-----------------~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
. +...+. -+-+|.-.......+++| |++|+..+||++.-.
T Consensus 388 EGL~vh~~~ls~~eR~~rv~~aL~-----EVGLDp~~r~RYPhEFSG--GQRQRIAIARAliLkP~~i~LDEPTSALD~S 460 (534)
T COG4172 388 EGLRVHEPKLSAAERDQRVIEALE-----EVGLDPATRNRYPHEFSG--GQRQRIAIARALILKPELILLDEPTSALDRS 460 (534)
T ss_pred hhhhhcCCCCCHHHHHHHHHHHHH-----HcCCChhHhhcCCcccCc--chhhHHHHHHHHhcCCcEEEecCCchHhhHH
Confidence 2 111111 222344333222367776 888888888887543
Q ss_pred ----HHHHHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 ----LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 ----L~~L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+..|.+.| +++|.+-+||+|.... +.-+|+.+|.|++++++.+|+
T Consensus 461 VQaQvv~LLr~LQ~k~~LsYLFISHDL~V------------------vrAl~~~viVm~~GkiVE~G~ 510 (534)
T COG4172 461 VQAQVLDLLRDLQQKHGLSYLFISHDLAV------------------VRALCHRVIVMRDGKIVEQGP 510 (534)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeccHHH------------------HHHhhceEEEEeCCEEeeeCC
Confidence 22222222 5789999999998765 556799999999998888775
No 340
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=2.8e-11 Score=111.99 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=97.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~---~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+.+|++++|+|+||||||||++.+++... + ..|. +++++..... ..+.+.+++.+|+..++. .++.+.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~n 105 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGN-VSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYEN 105 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccE-EEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHH
Confidence 67999999999999999999999998754 3 2565 5667654321 234457899999877665 577666
Q ss_pred HHHHHHHHhcCC-----------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+........... .+.+-+ +.+.... +...+++ |++++...+|+++..
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~--Gq~qrv~laral~~~p~llllDEPt~~LD~~~ 183 (252)
T PRK14255 106 VIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSG--GQQQRVCIARVLAVKPDVILLDEPTSALDPIS 183 (252)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 654211100000 000000 0111111 1233444 788888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+.+ +.|||+++|.... +..+||+++.|+++.++..
T Consensus 184 ~~~l~~~l~~~~~-~~tii~vsH~~~~------------------~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 184 STQIENMLLELRD-QYTIILVTHSMHQ------------------ASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred HHHHHHHHHHHHh-CCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 5455544444 5899999997654 5567899999987765443
No 341
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.24 E-value=5.6e-12 Score=131.13 Aligned_cols=157 Identities=19% Similarity=0.177 Sum_probs=98.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC------------CC-HH---H-HhhcccccCcc--ee
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA------------LD-PS---L-AETIGVKTENL--LL 115 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~------------~~-~~---~-~~~ig~~~~~~--~~ 115 (366)
+++|++++|+|+||||||||++.+++.+.+..|.+ ++++... .. .. + ...+|+.+|++ .+
T Consensus 39 v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i-~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l 117 (623)
T PRK10261 39 LQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV-QCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSL 117 (623)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEE-EECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhc
Confidence 67999999999999999999999999988777764 4443210 11 11 1 23689999986 34
Q ss_pred cCCCCHHHHHHHHHHHHhcC-----------CceEEEEec---ccccCCCCccCCccchhhHHHHHHHHHHH--------
Q 017792 116 AQPDCGEQALSLVDTLIRSG-----------SVDVVVVDS---VAALVPKGELDGEMGDAHMAMQARLMSQA-------- 173 (366)
Q Consensus 116 ~~~~~~e~~l~~~~~~~~~~-----------~~~lvviDs---l~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------- 173 (366)
....++.+.+.+........ -...+-+.. ..... ..++++ |++|+...|++++..
T Consensus 118 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-~~~LSg--Gq~QRv~iA~AL~~~P~lLllDE 194 (623)
T PRK10261 118 NPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRY-PHQLSG--GMRQRVMIAMALSCRPAVLIADE 194 (623)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCC-CccCCH--HHHHHHHHHHHHhCCCCEEEEeC
Confidence 55567777665422110000 011111111 11111 245555 889999999887754
Q ss_pred ------------HHHHHHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 ------------LRKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 ------------L~~L~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+..+.+.+. +.|+|||+++|.... +..+||+++.|+++.++.
T Consensus 195 Pt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~------------------~~~~adri~vl~~G~i~~ 249 (623)
T PRK10261 195 PTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGV------------------VAEIADRVLVMYQGEAVE 249 (623)
T ss_pred CCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH------------------HHHhCCEEEEeeCCeecc
Confidence 556666665 459999999998765 445566777776655443
No 342
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=7.8e-11 Score=101.01 Aligned_cols=129 Identities=22% Similarity=0.326 Sum_probs=85.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHH--HHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQ--ALSLVD 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~--~l~~~~ 129 (366)
+++|++++|+|+||+|||||+..+++.+.+..|. +++++..... ..+...+++.+| .+.-+ -+.++.
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~-i~~~~~~~~~~~~~~~~~~i~~~~q-------lS~G~~~r~~l~~ 93 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE-ILIDGKDIAKLPLEELRRRIGYVPQ-------LSGGQRQRVALAR 93 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccE-EEECCEEcccCCHHHHHhceEEEee-------CCHHHHHHHHHHH
Confidence 6799999999999999999999999988877776 5777654332 244556777766 33322 233334
Q ss_pred HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeee
Q 017792 130 TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEV 209 (366)
Q Consensus 130 ~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~ 209 (366)
.+. .++.++++|....-... .-...+...+..+ .+.++++|+++|..+.
T Consensus 94 ~l~--~~~~i~ilDEp~~~lD~-------------~~~~~l~~~l~~~----~~~~~tii~~sh~~~~------------ 142 (157)
T cd00267 94 ALL--LNPDLLLLDEPTSGLDP-------------ASRERLLELLREL----AEEGRTVIIVTHDPEL------------ 142 (157)
T ss_pred HHh--cCCCEEEEeCCCcCCCH-------------HHHHHHHHHHHHH----HHCCCEEEEEeCCHHH------------
Confidence 443 35899999998766520 0112222333333 3347999999998765
Q ss_pred ccCCceeeeeceEEEEEEE
Q 017792 210 TCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 210 ~~gG~~l~~~ad~~i~l~~ 228 (366)
+..+||.++.+.+
T Consensus 143 ------~~~~~d~i~~l~~ 155 (157)
T cd00267 143 ------AELAADRVIVLKD 155 (157)
T ss_pred ------HHHhCCEEEEEeC
Confidence 4445777777754
No 343
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.23 E-value=4.2e-11 Score=121.33 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=96.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H--HHHhhcccccCcce---ecCCCCHHHH--H
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P--SLAETIGVKTENLL---LAQPDCGEQA--L 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~--~~~~~ig~~~~~~~---~~~~~~~e~~--l 125 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++.... . .+.+.+++.+|+.. +++..++.+. +
T Consensus 271 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 349 (491)
T PRK10982 271 LHKGEILGIAGLVGAKRTDIVETLFGIREKSAGT-ITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLI 349 (491)
T ss_pred EeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccE-EEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheeh
Confidence 7899999999999999999999999988877786 5666643321 1 22445788877632 3333333222 1
Q ss_pred HHHHHHHhc-C-------------CceEEEE-ecccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 126 SLVDTLIRS-G-------------SVDVVVV-DSVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 126 ~~~~~~~~~-~-------------~~~lvvi-Dsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
..+...... . -...+-+ +..... +...+++ |++|+...||+++..
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSg--Gq~qrv~la~al~~~p~illLDEPt~gLD~~~ 426 (491)
T PRK10982 350 SNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRT-QIGSLSG--GNQQKVIIGRWLLTQPEILMLDEPTRGIDVGA 426 (491)
T ss_pred hhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccc-ccccCCc--HHHHHHHHHHHHhcCCCEEEEcCCCcccChhH
Confidence 101000000 0 0011111 111111 1245555 888888888887664
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+.++...+.+.+.|||+++|..+. +..+||+++.|.++.+
T Consensus 427 ~~~~~~~l~~l~~~~~tvi~vsHd~~~------------------~~~~~d~v~~l~~g~i 469 (491)
T PRK10982 427 KFEIYQLIAELAKKDKGIIIISSEMPE------------------LLGITDRILVMSNGLV 469 (491)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCChHH------------------HHhhCCEEEEEECCEE
Confidence 666666667789999999998765 5567999999986643
No 344
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=2.4e-11 Score=112.53 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=96.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+ ..|. ++++++.... ....+.+++.+|+..++. .++.+.
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~en 106 (253)
T PRK14261 29 IPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGD-ILYNGENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYEN 106 (253)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceE-EEECCEEccccccchhhhhceEEEEecCCccCc-ccHHHH
Confidence 679999999999999999999999987542 2465 5666554321 234556899999876665 377776
Q ss_pred HHHHHHHHhcCC-----------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.+......... .+.+-+ +.+.... +...+++ |++++...+|++...
T Consensus 107 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~--G~~qrv~laral~~~p~lllLDEP~~gLD~~~ 184 (253)
T PRK14261 107 VAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSG--GQQQRLCIARTLAVNPEVILMDEPCSALDPIA 184 (253)
T ss_pred HHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 654322110000 000000 0011111 1123333 778888888877653
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+++ +.|||+++|.... +..+||+++.|.+++++..
T Consensus 185 ~~~l~~~l~~~~~-~~tvii~sh~~~~------------------~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14261 185 TAKIEDLIEDLKK-EYTVIIVTHNMQQ------------------AARVSDYTGFMYLGKLIEF 229 (253)
T ss_pred HHHHHHHHHHHhh-CceEEEEEcCHHH------------------HHhhCCEEEEEECCEEEEc
Confidence 5555555544 5899999997654 5567898888887765433
No 345
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=99.23 E-value=4.2e-11 Score=111.58 Aligned_cols=197 Identities=17% Similarity=0.172 Sum_probs=128.6
Q ss_pred ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH----HHHhhcccccC------
Q 017792 42 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP----SLAETIGVKTE------ 111 (366)
Q Consensus 42 G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~----~~~~~ig~~~~------ 111 (366)
-+|.|++.|+ |..+|+++++.||+|||||||+...+..+..+|-..+|-++|..... .+.+-.|+...
T Consensus 259 RFpvLNk~Lk--GhR~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~~y 336 (514)
T KOG2373|consen 259 RFPVLNKYLK--GHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLNSY 336 (514)
T ss_pred hhhHHHHHhc--cCCCCceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeecchHHHHHHHHHHHccCchHhhhhhh
Confidence 3678999997 99999999999999999999998888888888888899998876543 22233344321
Q ss_pred --------cce-----ecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHH
Q 017792 112 --------NLL-----LAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLS 178 (366)
Q Consensus 112 --------~~~-----~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~ 178 (366)
++. +......+..++.+...+--.++..||||.++.|.....+..+ + -...-.+...+|+++
T Consensus 337 ~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~D---r--f~~QD~iig~fR~fA 411 (514)
T KOG2373|consen 337 KHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMALD---R--FHLQDRIIGYFRQFA 411 (514)
T ss_pred hHHHHHHhccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhccc---h--hhhHHHHHHHHHHHh
Confidence 110 1112234445555555554557889999999999865444421 1 111223445667666
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 255 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~ 255 (366)
.+++|.|-++-|.+++-+.... .+....|.....+-||.++.+.+.+... ..|.+ ++.|.||||...
T Consensus 412 ---T~nn~HvTlVvHPRKed~d~El--~t~s~fGsAkatQEADNVliiQdkrl~~----~rgkk-yLqi~KNRy~Gd 478 (514)
T KOG2373|consen 412 ---TQNNIHVTLVVHPRKEDGDTEL--DTQSFFGSAKATQEADNVLIIQDKRLDR----DRGKK-YLQILKNRYYGD 478 (514)
T ss_pred ---hccceeEEEEecccccCCCcee--eehhhccccccccccccEEEEeeccccc----ccchh-hhhhhhhcccCc
Confidence 6789999999999987322100 0011223344677899999998754322 22433 899999998654
No 346
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=4.2e-11 Score=110.67 Aligned_cols=157 Identities=14% Similarity=0.187 Sum_probs=96.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~---~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++... + ..|. +++++..... ..+.+.+++.+|+..++.. ++.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~n 103 (250)
T PRK14266 26 IPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGH-IYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDN 103 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccE-EEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHH
Confidence 67999999999999999999999998764 2 4566 5667654321 2345679999998766653 66655
Q ss_pred HHHHHHHHhcCC-----------ceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+........... ...+-++ .+..+. +...+++ |++|+...+|+++..
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~--Gq~qrv~laral~~~p~llllDEP~~gLD~~~ 181 (250)
T PRK14266 104 VAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSG--GQQQRLCIARTIAVSPEVILMDEPCSALDPIS 181 (250)
T ss_pred HHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCH--HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHH
Confidence 543211000000 0000000 011111 1233443 888888888887754
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+++ ++|||+++|.... +..+||+++.+.++.+...
T Consensus 182 ~~~l~~~l~~~~~-~~tiii~sh~~~~------------------~~~~~~~i~~l~~G~i~~~ 226 (250)
T PRK14266 182 TTKIEDLIHKLKE-DYTIVIVTHNMQQ------------------ATRVSKYTSFFLNGEIIES 226 (250)
T ss_pred HHHHHHHHHHHhc-CCeEEEEECCHHH------------------HHhhcCEEEEEECCeEEEe
Confidence 5555555543 7999999997654 4556788888887655443
No 347
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.22 E-value=2.5e-11 Score=110.44 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=34.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
+++|++++|.|+||||||||++.+++...+..|. +++++.
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~ 84 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGT-VTVRGR 84 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCE
Confidence 6799999999999999999999999988887776 566654
No 348
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.22 E-value=4.8e-11 Score=124.01 Aligned_cols=164 Identities=13% Similarity=0.123 Sum_probs=110.6
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~---gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
+=+++|++++|.||||||||||++.+++...+. .|. +++++.......+.+.+|+.+|+..+....|+.|.+.+..
T Consensus 46 ~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~-i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~ 124 (617)
T TIGR00955 46 GVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGS-VLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQA 124 (617)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeE-EEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHH
Confidence 578999999999999999999999999876553 344 6777765444566778999999988888889988876543
Q ss_pred HHHhcCC-------------ceEEEEecc-cccCCC----CccCCccchhhHHHHHHHHHHH------------------
Q 017792 130 TLIRSGS-------------VDVVVVDSV-AALVPK----GELDGEMGDAHMAMQARLMSQA------------------ 173 (366)
Q Consensus 130 ~~~~~~~-------------~~lvviDsl-~~l~~~----~~l~~~~g~~~~~~~ar~l~~~------------------ 173 (366)
.+-.... .+.+-++.. ...... ..+++ |++++...|+++...
T Consensus 125 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSg--GqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~ 202 (617)
T TIGR00955 125 HLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSG--GERKRLAFASELLTDPPLLFCDEPTSGLDSFMA 202 (617)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCc--chhhHHHHHHHHHcCCCEEEeeCCCcchhHHHH
Confidence 3210000 000111111 111111 23555 889999999887654
Q ss_pred --HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 --LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 --L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++.+.+.+.|.|||+++|..+. . +...+|.++.|.+++.+..|+
T Consensus 203 ~~l~~~L~~l~~~g~tvi~~~hq~~~----------~-------i~~~~D~i~ll~~G~~v~~G~ 250 (617)
T TIGR00955 203 YSVVQVLKGLAQKGKTIICTIHQPSS----------E-------LFELFDKIILMAEGRVAYLGS 250 (617)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCCH----------H-------HHHHhceEEEeeCCeEEEECC
Confidence 444444555569999999996531 0 456789999999887766654
No 349
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=2e-11 Score=124.86 Aligned_cols=148 Identities=16% Similarity=0.142 Sum_probs=94.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHH-H--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT-L-- 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~-~-- 131 (366)
+.+|++++|+||||||||||++.+++.+.+..|.+ ++++. .++++.+|+..++...++.+.+..... .
T Consensus 24 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i-~~~~~--------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 94 (530)
T PRK15064 24 FGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNV-SLDPN--------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWE 94 (530)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCC--------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHH
Confidence 67999999999999999999999999888877774 45432 347888887766666666665442110 0
Q ss_pred -------Hhc-C-----------------------C--------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHH
Q 017792 132 -------IRS-G-----------------------S--------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 172 (366)
Q Consensus 132 -------~~~-~-----------------------~--------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~ 172 (366)
+.. . . ...+-++....-.+...+++ |++|+...|++++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg--Gq~qrv~lA~aL~~ 172 (530)
T PRK15064 95 VKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAP--GWKLRVLLAQALFS 172 (530)
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCH--HHHHHHHHHHHHhc
Confidence 000 0 0 00000110000011234444 78888888887765
Q ss_pred H-----------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 173 A-----------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 173 ~-----------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
. ...+...+++.+.|||+++|.... +..+||+++.|+++.+
T Consensus 173 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~------------------~~~~~d~i~~l~~g~i 230 (530)
T PRK15064 173 NPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHF------------------LNSVCTHMADLDYGEL 230 (530)
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHH------------------HHhhcceEEEEeCCEE
Confidence 3 444444556679999999998765 5567788888887765
No 350
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.22 E-value=2e-11 Score=138.44 Aligned_cols=160 Identities=13% Similarity=0.106 Sum_probs=109.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
.+.+|++++|.|+||||||||++.+++...+..|. +++++..... ..+++.+|+.+|+..++...|+.+.+.+...+
T Consensus 952 ~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~-I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~l 1030 (2272)
T TIGR01257 952 TFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGT-VLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQL 1030 (2272)
T ss_pred EEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceE-EEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHh
Confidence 37899999999999999999999999999888887 5676654332 23456799999998888888998887764332
Q ss_pred HhcCC----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 132 IRSGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 132 ~~~~~----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
..... ...+-++...... ...+++ |++|+...|++++.. +.++.+.+
T Consensus 1031 kg~~~~~~~~~v~~lL~~vgL~~~~~~~-~~~LSG--GqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l 1107 (2272)
T TIGR01257 1031 KGRSWEEAQLEMEAMLEDTGLHHKRNEE-AQDLSG--GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107 (2272)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 10000 0111111111111 234444 788888888877653 55666665
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+ .|.|||+++|..+. +..+||+++.|.++++...|.
T Consensus 1108 ~-~g~TIIltTHdmde------------------a~~laDrI~iL~~GkL~~~Gs 1143 (2272)
T TIGR01257 1108 R-SGRTIIMSTHHMDE------------------ADLLGDRIAIISQGRLYCSGT 1143 (2272)
T ss_pred h-CCCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEecC
Confidence 4 48999999998765 455789999998887666553
No 351
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.21 E-value=8.4e-11 Score=99.53 Aligned_cols=118 Identities=19% Similarity=0.276 Sum_probs=79.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHH--HHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ--ALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~--~l~~~~~~~ 132 (366)
+++|++++|.|+||||||||++.+++...+..|. +++++. ..+++.++ .+.-+ -+.++..++
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~~~--------~~i~~~~~-------lS~G~~~rv~laral~ 86 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTWGST--------VKIGYFEQ-------LSGGEKMRLALAKLLL 86 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceE-EEECCe--------EEEEEEcc-------CCHHHHHHHHHHHHHh
Confidence 6799999999999999999999999998887786 566652 35666665 44333 233444443
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccC
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCG 212 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~g 212 (366)
.+++++++|....-.. . ..+ ..+..+.+. .+.|||+++|..+.
T Consensus 87 --~~p~illlDEP~~~LD----------~----~~~---~~l~~~l~~---~~~til~~th~~~~--------------- 129 (144)
T cd03221 87 --ENPNLLLLDEPTNHLD----------L----ESI---EALEEALKE---YPGTVILVSHDRYF--------------- 129 (144)
T ss_pred --cCCCEEEEeCCccCCC----------H----HHH---HHHHHHHHH---cCCEEEEEECCHHH---------------
Confidence 3689999999876652 0 111 122222222 25799999997654
Q ss_pred CceeeeeceEEEEEEE
Q 017792 213 GNALKFYASVRLNIKR 228 (366)
Q Consensus 213 G~~l~~~ad~~i~l~~ 228 (366)
+..+||+++.|.+
T Consensus 130 ---~~~~~d~v~~l~~ 142 (144)
T cd03221 130 ---LDQVATKIIELED 142 (144)
T ss_pred ---HHHhCCEEEEEeC
Confidence 4446777777754
No 352
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.21 E-value=2.3e-11 Score=124.37 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=95.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC---HH---HH-hhcccccCcce--ecCCCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD---PS---LA-ETIGVKTENLL--LAQPDC 120 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~---~~---~~-~~ig~~~~~~~--~~~~~~ 120 (366)
+.+|++++|+||||||||||++.+++.+.+ ..|. ++++++.... .. ++ +.+|+.+|+.. +....+
T Consensus 32 i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~ 110 (529)
T PRK15134 32 IEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGD-IRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHT 110 (529)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceE-EEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhh
Confidence 679999999999999999999999998875 3565 5666654321 11 12 46899999864 334456
Q ss_pred HHHHHHHHHHHHhcC-----------CceEEEEeccccc--CCCCccCCccchhhHHHHHHHHHHH--------------
Q 017792 121 GEQALSLVDTLIRSG-----------SVDVVVVDSVAAL--VPKGELDGEMGDAHMAMQARLMSQA-------------- 173 (366)
Q Consensus 121 ~e~~l~~~~~~~~~~-----------~~~lvviDsl~~l--~~~~~l~~~~g~~~~~~~ar~l~~~-------------- 173 (366)
+.+.+.......... -...+-++..... .+...+++ |++|+...||+++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSg--Ge~qrv~iAraL~~~p~llllDEPt~~LD 188 (529)
T PRK15134 111 LEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSG--GERQRVMIAMALLTRPELLIADEPTTALD 188 (529)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCH--HHHHHHHHHHHHhcCCCEEEEcCCCCccC
Confidence 655543211100000 0111111111000 01245555 888998898888754
Q ss_pred ------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 174 ------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 174 ------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+.++...+++ .+.|||+++|..+. +..+||+++.|+++.++
T Consensus 189 ~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~------------------~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 189 VSVQAQILQLLRELQQELNMGLLFITHNLSI------------------VRKLADRVAVMQNGRCV 236 (529)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEcCcHHH------------------HHHhcCEEEEEECCEEE
Confidence 5555555544 48999999998765 34456666666665543
No 353
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.21 E-value=3.8e-11 Score=123.44 Aligned_cols=154 Identities=15% Similarity=0.144 Sum_probs=97.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHH-----HH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQA-----LS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~-----l~ 126 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+.+.+++.+|+..++.....++. -+
T Consensus 365 i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~-i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~ 443 (555)
T TIGR01194 365 IAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGE-ILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLD 443 (555)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHH
Confidence 7799999999999999999999999999988887 6677765433 4567789999998766543221110 11
Q ss_pred HHHHHHhcCCceEEEEecccc-cCCCCccCCccchhhHHHHHHHHHHH--------------------H-HHHHHHhhhc
Q 017792 127 LVDTLIRSGSVDVVVVDSVAA-LVPKGELDGEMGDAHMAMQARLMSQA--------------------L-RKLSHSLSLS 184 (366)
Q Consensus 127 ~~~~~~~~~~~~lvviDsl~~-l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L-~~L~~~l~~~ 184 (366)
.+...++.-...- .++.+.. +.....+++ |++|+...||++.+. + ..+.+.++..
T Consensus 444 ~~~~~~~~~~l~~-~~~~lp~g~~t~~~LSg--Gq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~ 520 (555)
T TIGR01194 444 NAQQYLQRLEIAD-KVKIEDGGFSTTTALST--GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQ 520 (555)
T ss_pred HHHHHHHHcCCch-hhcccccccCCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC
Confidence 1112222111110 0111110 001133554 899999999988764 3 2233333456
Q ss_pred CcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 185 QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 185 ~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+.|+|+++|..+. + ..||+++.|+++++
T Consensus 521 ~~tiiiisH~~~~------------------~-~~~d~i~~l~~G~i 548 (555)
T TIGR01194 521 GKTIIIISHDDQY------------------F-ELADQIIKLAAGCI 548 (555)
T ss_pred CCEEEEEeccHHH------------------H-HhCCEEEEEECCEE
Confidence 8999999996432 2 35899999987653
No 354
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.21 E-value=2.6e-11 Score=127.84 Aligned_cols=153 Identities=20% Similarity=0.257 Sum_probs=100.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCC------------C
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP------------D 119 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~------------~ 119 (366)
+++|+.++|+|+||||||||++.+++.+.+..|. +++++.+..+ ..+++.+++++|+..++.. .
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~-I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~ 566 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS-VLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYA 566 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCC
Confidence 7899999999999999999999999999998886 6777654332 4678889999998776542 1
Q ss_pred CHHHHHHHHHH-----HHhcCCceEEEEecccccCCC--CccCCccchhhHHHHHHHHHHH-------------------
Q 017792 120 CGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 120 ~~e~~l~~~~~-----~~~~~~~~lvviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+-+++.+.+.. .+.... +.+...... ..+++ |++|+...||++.+.
T Consensus 567 ~~~~i~~a~~~~~l~~~i~~lp------~gl~T~i~e~G~~LSg--GQrQRlalARall~~p~iliLDE~Ts~LD~~te~ 638 (694)
T TIGR03375 567 DDEEILRAAELAGVTEFVRRHP------DGLDMQIGERGRSLSG--GQRQAVALARALLRDPPILLLDEPTSAMDNRSEE 638 (694)
T ss_pred CHHHHHHHHHHcChHHHHHhCc------ccccceecCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 22333222221 111110 111111111 23444 889999999987754
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.+....+. .++|+|+++|..+. + ..||+++.|++++++..|+
T Consensus 639 ~i~~~l~~~~-~~~T~iiItHrl~~------------------~-~~~D~iivl~~G~i~e~G~ 682 (694)
T TIGR03375 639 RFKDRLKRWL-AGKTLVLVTHRTSL------------------L-DLVDRIIVMDNGRIVADGP 682 (694)
T ss_pred HHHHHHHHHh-CCCEEEEEecCHHH------------------H-HhCCEEEEEeCCEEEeeCC
Confidence 323222222 37999999996542 2 3589999999887665553
No 355
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=3.9e-11 Score=114.22 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=96.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
|.+|++++|+|+||||||||++.+++.+. +..|. +++++..... ..+.+.++|.+|+..+++ .++.+.
T Consensus 68 i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~-I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 145 (305)
T PRK14264 68 IPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGS-VELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIREN 145 (305)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE-EEECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHH
Confidence 67999999999999999999999999875 34665 6676654321 234567999999876654 477776
Q ss_pred HHHHHHHHhcC--------------C---------ceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH-----
Q 017792 125 LSLVDTLIRSG--------------S---------VDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA----- 173 (366)
Q Consensus 125 l~~~~~~~~~~--------------~---------~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----- 173 (366)
+.+........ . .+.+-++ .+.... +...+++ |++|+...||+++..
T Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg--Gq~qrv~LAraL~~~p~lLL 223 (305)
T PRK14264 146 ISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSG--GQQQRLCIARCLAVDPEVIL 223 (305)
T ss_pred HHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCH--HHHHHHHHHHHHhcCCCEEE
Confidence 65432110000 0 0000000 000111 1123443 788888888887754
Q ss_pred ---------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEE-EEEEEeceeec
Q 017792 174 ---------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVR-LNIKRIGLVKK 234 (366)
Q Consensus 174 ---------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~-i~l~~~~~~~~ 234 (366)
+.++.+.+.+ +.|||+++|.... +..+||++ +.|+++.++..
T Consensus 224 LDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~------------------i~~~~d~i~~~l~~G~i~~~ 281 (305)
T PRK14264 224 MDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQ------------------AARISDQTAVFLTGGELVEY 281 (305)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHH------------------HHHhcCEEEEEecCCEEEEe
Confidence 5555555544 5899999997654 45578876 45676654443
No 356
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.21 E-value=3.4e-11 Score=127.19 Aligned_cols=158 Identities=21% Similarity=0.266 Sum_probs=101.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
+++|+.++|+||||||||||++.+++.+.+.+|. +++|+.+..+ ..+.+++++.+|++.++.. |+.+++..
T Consensus 504 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~-I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~~ 581 (711)
T TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ-VLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLTD 581 (711)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE-EEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCCC
Confidence 7899999999999999999999999999998886 6777764322 4677889999998877643 33333321
Q ss_pred -----HHHHHhcCCceEEEEec----ccccCC--CCccCCccchhhHHHHHHHHHHH-----------------HHHHHH
Q 017792 128 -----VDTLIRSGSVDVVVVDS----VAALVP--KGELDGEMGDAHMAMQARLMSQA-----------------LRKLSH 179 (366)
Q Consensus 128 -----~~~~~~~~~~~lvviDs----l~~l~~--~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~ 179 (366)
+...++.-...- .+++ +..... ...+++ |++|+...||++.+. -..+..
T Consensus 582 ~~~e~i~~al~~a~l~~-~i~~lp~GldT~ige~G~~LSG--GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 582 TPDEEIMAAAKAANAHD-FIMEFPNGYDTEVGEKGSQLSG--GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE 658 (711)
T ss_pred CCHHHHHHHHHHcCCHH-HHHhCCCccCCcccCCCCcCCH--HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH
Confidence 111111101100 0111 111111 123444 899999999998764 122222
Q ss_pred HhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 180 SLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 180 ~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
.....++|+|+++|..+. + ..||+++.|+++.+...|+
T Consensus 659 ~~~~~~~TvIiItHrl~~------------------i-~~aD~IivL~~G~ive~Gt 696 (711)
T TIGR00958 659 SRSRASRTVLLIAHRLST------------------V-ERADQILVLKKGSVVEMGT 696 (711)
T ss_pred hhccCCCeEEEEeccHHH------------------H-HhCCEEEEEECCEEEEeeC
Confidence 223458999999996543 2 2489999998877665543
No 357
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.20 E-value=7.8e-11 Score=99.76 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=55.4
Q ss_pred CChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceec
Q 017792 41 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 116 (366)
Q Consensus 41 TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~ 116 (366)
++-+-||.+-- -+.+|+.+.|.||+|||||||+++++.+..+..|. +++.+|.... +.++.++.|..|.+.++
T Consensus 14 ~~a~il~~isl--~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~-l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 14 GDAKILNNISL--SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGT-LLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred CCCeeecceee--eecCCceEEEeCCCCccHHHHHHHHHhccCCCCce-EEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 33344444322 47799999999999999999999999999988885 7777776443 46788888888776554
No 358
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.20 E-value=5.9e-11 Score=110.59 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=33.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+++|++++|+|+||||||||++.+++.+.+..|.+ ++++
T Consensus 47 i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I-~~~g 85 (264)
T PRK13546 47 AYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV-DRNG 85 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECC
Confidence 67999999999999999999999999988877764 4444
No 359
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.20 E-value=1.7e-10 Score=97.11 Aligned_cols=156 Identities=16% Similarity=0.226 Sum_probs=104.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC----C----HHHHhhcccccCcceecCCCCHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D----PSLAETIGVKTENLLLAQPDCGEQALS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~----~----~~~~~~ig~~~~~~~~~~~~~~e~~l~ 126 (366)
-+.|+.+++.||+|+|||||++.+...-.+.+|....-+.+-.+ . ..+++.+|+++|...+++..++-+.+-
T Consensus 25 ~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enli 104 (242)
T COG4161 25 CPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLI 104 (242)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHH
Confidence 57899999999999999999988877666777753322222111 1 256788999999998888777655432
Q ss_pred HH----------------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 127 LV----------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 127 ~~----------------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
.. ..+++. +-+.....-+| -.+++ |++|+..+||++...
T Consensus 105 eap~kv~gl~~~qa~~~a~ellkr-----lrl~~~adr~p-lhlsg--gqqqrvaiaralmmkpqvllfdeptaaldpei 176 (242)
T COG4161 105 EAPCRVLGLSKDQALARAEKLLKR-----LRLKPYADRYP-LHLSG--GQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176 (242)
T ss_pred hhhHHHhCCCHHHHHHHHHHHHHH-----hccccccccCc-eeccc--chhhhHHHHHHHhcCCcEEeecCcccccCHHH
Confidence 21 112211 11222333332 33444 899999999987543
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+-.+++.+...|+|-++++|..+. ....+++++.|.++.++..|+
T Consensus 177 taqvv~iikel~~tgitqvivthev~v------------------a~k~as~vvyme~g~ive~g~ 224 (242)
T COG4161 177 TAQIVSIIKELAETGITQVIVTHEVEV------------------ARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred HHHHHHHHHHHHhcCceEEEEEeehhH------------------HHhhhhheEeeecCeeEeecc
Confidence 667788888999999999995543 233577888888877666553
No 360
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=8.6e-11 Score=116.94 Aligned_cols=158 Identities=17% Similarity=0.224 Sum_probs=100.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC---CCHHHHhhcccccCcceecCCC------------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPD------------ 119 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~---~~~~~~~~ig~~~~~~~~~~~~------------ 119 (366)
+++|+.++|+|+||||||||+..+++.+.+..|. +.+++-+. ....|.+++.+++|+++++...
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~-I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~ 422 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGE-IRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDA 422 (559)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCce-EEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcC
Confidence 7899999999999999999999999999888786 55664433 3368899999999998876531
Q ss_pred CHHHHHHHHHHHHhcCCceEEE-EecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 120 CGEQALSLVDTLIRSGSVDVVV-VDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 120 ~~e~~l~~~~~~~~~~~~~lvv-iDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
+-+++.+.+... +-.+.+- -+.+..........-+.|+.||...||++... +.+..
T Consensus 423 s~e~i~~al~~a---~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l 499 (559)
T COG4988 423 SDEEIIAALDQA---GLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQAL 499 (559)
T ss_pred CHHHHHHHHHHh---cHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHH
Confidence 223333332221 0000000 12233222222211223888888888876543 22222
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
..+. .+.|||+++|.... ..-+|+++.|++++.+..|.
T Consensus 500 ~~l~-~~ktvl~itHrl~~-------------------~~~~D~I~vld~G~l~~~g~ 537 (559)
T COG4988 500 QELA-KQKTVLVITHRLED-------------------AADADRIVVLDNGRLVEQGT 537 (559)
T ss_pred HHHH-hCCeEEEEEcChHH-------------------HhcCCEEEEecCCceeccCC
Confidence 2222 36999999996543 33579999999887666654
No 361
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.19 E-value=3.8e-11 Score=124.30 Aligned_cols=151 Identities=21% Similarity=0.235 Sum_probs=98.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL------ 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l------ 125 (366)
+++|+.++|+|+||||||||++.+++.+.+..|. +++++.+..+ ..+.+.++|.+|++.++.. |+.+++
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~ 435 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR-ILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRPD 435 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCCCC
Confidence 6799999999999999999999999999998886 6777754332 4678889999998876642 333332
Q ss_pred -------HHHHH-----HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 126 -------SLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 126 -------~~~~~-----~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
..+.. .+...... +|....-. ...+++ |++|+...||++.+.
T Consensus 436 ~~d~~i~~al~~~~l~~~i~~lp~g---ldt~i~~~-g~~LSg--Gq~QRialARall~~~~iliLDEpts~LD~~t~~~ 509 (588)
T PRK13657 436 ATDEEMRAAAERAQAHDFIERKPDG---YDTVVGER-GRQLSG--GERQRLAIARALLKDPPILILDEATSALDVETEAK 509 (588)
T ss_pred CCHHHHHHHHHHhCHHHHHHhCccc---ccchhcCC-CCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 22111 11111100 12211111 123544 899999999998764
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.+....+ ..++|+|+++|..+. ...||.++.|.++.+..
T Consensus 510 i~~~l~~~-~~~~tvIiitHr~~~-------------------~~~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 510 VKAALDEL-MKGRTTFIIAHRLST-------------------VRNADRILVFDNGRVVE 549 (588)
T ss_pred HHHHHHHH-hcCCEEEEEEecHHH-------------------HHhCCEEEEEECCEEEE
Confidence 33322222 247999999996542 23589999998765443
No 362
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.19 E-value=4e-11 Score=126.77 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=99.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQAL------ 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l------ 125 (366)
+++|+.++|+|++|||||||++.+++.+.+..|. +++++.+.. ...+++.+++++|+..+++. |+.+++
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~-I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~ 574 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE-ILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKE 574 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE-EEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCC
Confidence 7899999999999999999999999999998886 677775432 24678899999998776543 333322
Q ss_pred --------HHHHH-----HHhcCCceEEEEecccccCC--CCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 126 --------SLVDT-----LIRSGSVDVVVVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 126 --------~~~~~-----~~~~~~~~lvviDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.+.. .+.... +.+..... ...+++ |++|+...||++.+.
T Consensus 575 ~~~~~~i~~a~~~a~l~~~i~~lp------~gldt~i~e~G~~LSg--GQrQRialARall~~p~iliLDE~Ts~LD~~t 646 (708)
T TIGR01193 575 NVSQDEIWAACEIAEIKDDIENMP------LGYQTELSEEGSSISG--GQKQRIALARALLTDSKVLILDESTSNLDTIT 646 (708)
T ss_pred CCCHHHHHHHHHHhCCHHHHHhcc------cccCcEecCCCCCCCH--HHHHHHHHHHHHhhCCCEEEEeCccccCCHHH
Confidence 22221 111110 11111121 133444 899999999998764
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+....+ .++|+|+++|..+. + ..||+++.|+++++...|
T Consensus 647 e~~i~~~L~~~--~~~T~IiitHr~~~------------------~-~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 647 EKKIVNNLLNL--QDKTIIFVAHRLSV------------------A-KQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred HHHHHHHHHHh--cCCEEEEEecchHH------------------H-HcCCEEEEEECCEEEEEC
Confidence 22222222 47999999996542 2 358999999887665544
No 363
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.19 E-value=5.7e-11 Score=121.90 Aligned_cols=158 Identities=19% Similarity=0.247 Sum_probs=99.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|+.++|+|+||||||||++.+++.+.+..|. +++++.... ...+.+.+++.+|+..+++. |+.+++....
T Consensus 341 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~-i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~ 418 (544)
T TIGR01842 341 LQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGS-VRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGEN 418 (544)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCCC
Confidence 7899999999999999999999999999988887 566665332 23567789999998876643 4444432110
Q ss_pred -------HHHhcCCce-E--EEEecccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 130 -------TLIRSGSVD-V--VVVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 130 -------~~~~~~~~~-l--vviDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
...+..... . -.-+.+..... ...+++ |++|+...||++.+. +.+.
T Consensus 419 ~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSg--Gq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~ 496 (544)
T TIGR01842 419 ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSG--GQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANA 496 (544)
T ss_pred CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHH
Confidence 000000000 0 00011111111 123444 899999999987754 3343
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+...+.|+|+++|..+. + ..||+++.|++++++..|
T Consensus 497 l~~~~~~~~tvi~ith~~~~------------------~-~~~d~i~~l~~G~i~~~g 535 (544)
T TIGR01842 497 IKALKARGITVVVITHRPSL------------------L-GCVDKILVLQDGRIARFG 535 (544)
T ss_pred HHHHhhCCCEEEEEeCCHHH------------------H-HhCCEEEEEECCEEEeeC
Confidence 43333458999999996532 2 358999999887665544
No 364
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.19 E-value=4e-11 Score=117.04 Aligned_cols=158 Identities=19% Similarity=0.198 Sum_probs=98.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC--CC-HHHHhhcccccCcceecCCCCHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LD-PSLAETIGVKTENLLLAQPDCGEQALSLVDT- 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~--~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~- 130 (366)
+++|+.++|+||+|||||||++.+.+.+.+..|. +.+|+-+. ++ ..+-+++||.||++.+++. |+.|++..+..
T Consensus 359 l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~-VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~ 436 (580)
T COG4618 359 LQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGS-VRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEE 436 (580)
T ss_pred ecCCceEEEECCCCccHHHHHHHHHcccccCCCc-EEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhcccc
Confidence 6799999999999999999999999999988886 67776543 33 4678899999999988764 23333222110
Q ss_pred -----------HHhcCCceEEEEecccccCC--CCccCCccchhhHHHHHHHHHH--------------------HHHHH
Q 017792 131 -----------LIRSGSVDVVVVDSVAALVP--KGELDGEMGDAHMAMQARLMSQ--------------------ALRKL 177 (366)
Q Consensus 131 -----------~~~~~~~~lvviDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~--------------------~L~~L 177 (366)
+..-++.-+-.-|....... ...+++ |++|+...||++-. +|.+-
T Consensus 437 ~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSg--GQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A 514 (580)
T COG4618 437 ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSG--GQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514 (580)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCc--hHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH
Confidence 00000000000111111111 112222 55555555555432 25555
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+++.|+++|+++|..+ +-..+|.++.|+.+.+..-|
T Consensus 515 i~~~k~rG~~vvviaHRPs-------------------~L~~~Dkilvl~~G~~~~FG 553 (580)
T COG4618 515 ILAAKARGGTVVVIAHRPS-------------------ALASVDKILVLQDGRIAAFG 553 (580)
T ss_pred HHHHHHcCCEEEEEecCHH-------------------HHhhcceeeeecCChHHhcC
Confidence 5666789999999999544 34467999999887654444
No 365
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.18 E-value=6.4e-11 Score=122.48 Aligned_cols=157 Identities=20% Similarity=0.247 Sum_probs=99.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|+.++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+.+.+++.+|+..++. .|+.+++...
T Consensus 358 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~ 435 (585)
T TIGR01192 358 AKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ-ILIDGIDINTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGREG 435 (585)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCE-EEECCEEhhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCCCC
Confidence 6799999999999999999999999999888886 5667654322 456788999999887664 3555444321
Q ss_pred ------HHHHhcCCceEE---EEecccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 129 ------DTLIRSGSVDVV---VVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 129 ------~~~~~~~~~~lv---viDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
..........-. ..+.+..... ...+++ |++|+...||++... +.+.
T Consensus 436 ~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg--Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~ 513 (585)
T TIGR01192 436 ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG--GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNA 513 (585)
T ss_pred CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 000000000000 0011111111 123444 899999999988764 3333
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+. .+.|||+++|..+. +. .||.++.|.++++...|
T Consensus 514 l~~~~-~~~tvI~isH~~~~------------------~~-~~d~i~~l~~G~i~~~g 551 (585)
T TIGR01192 514 IDALR-KNRTTFIIAHRLST------------------VR-NADLVLFLDQGRLIEKG 551 (585)
T ss_pred HHHHh-CCCEEEEEEcChHH------------------HH-cCCEEEEEECCEEEEEC
Confidence 33332 48999999997643 32 38999999877655443
No 366
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.3e-10 Score=117.95 Aligned_cols=158 Identities=20% Similarity=0.259 Sum_probs=102.9
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCC-----------
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPD----------- 119 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~----------- 119 (366)
-|+||++++|+||+|+||||++..+...+.|.+|. +.+|+....+ .-+.+++|++-|++.++...
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~-IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~ 568 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGR-ILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDN 568 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe-EEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCC
Confidence 48999999999999999999999999999999997 6778775533 45678899999888766432
Q ss_pred -CHHHHHHHHHHHHhcCCceEEEEecccccCCCC--ccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 120 -CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKG--ELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 120 -~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~--~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
+-+++...+.. ...+..-.-.-|......... .++| |++|+..+||++.+. +++
T Consensus 569 ~t~e~i~~AAk~-ANah~FI~~~p~gY~T~VGEkG~qLSG--GQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~ 645 (716)
T KOG0058|consen 569 ATDEEIEAAAKM-ANAHEFITNFPDGYNTVVGEKGSQLSG--GQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQE 645 (716)
T ss_pred CCHHHHHHHHHH-hChHHHHHhCccccccccCCccccccc--hHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHH
Confidence 22333322221 111111111123333333333 4444 899999999998764 333
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
....+. .+.|||+|.|..+-+. -||.++.+.++.+...|
T Consensus 646 aL~~~~-~~rTVlvIAHRLSTV~-------------------~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 646 ALDRLM-QGRTVLVIAHRLSTVR-------------------HADQIVVIDKGRVVEMG 684 (716)
T ss_pred HHHHhh-cCCeEEEEehhhhHhh-------------------hccEEEEEcCCeEEecc
Confidence 332221 3699999999776533 25777888877655544
No 367
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.18 E-value=7.1e-11 Score=121.78 Aligned_cols=154 Identities=19% Similarity=0.148 Sum_probs=96.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|+.++|+||||||||||++.+++.+.+..|. +++++.+.. ...+.+.+++.+|++.++.. |+.+++...
T Consensus 338 i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~ 415 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGD-IRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRPD 415 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCE-EEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCCC
Confidence 7899999999999999999999999999988887 566665432 24667889999998877653 555443221
Q ss_pred ------HHHHhcCCceEE---EEecccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 129 ------DTLIRSGSVDVV---VVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 129 ------~~~~~~~~~~lv---viDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
..........-. .-+.+..... ...+++ |++|+...||++.+. +.+.
T Consensus 416 ~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSg--Gq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~ 493 (569)
T PRK10789 416 ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSG--GQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN 493 (569)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCH--HHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHH
Confidence 111110000000 0011111111 123444 899999999988764 3333
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
...+. .++|+|+++|..+. + ..||+++.|.++.+.
T Consensus 494 l~~~~-~~~tii~itH~~~~------------------~-~~~d~i~~l~~G~i~ 528 (569)
T PRK10789 494 LRQWG-EGRTVIISAHRLSA------------------L-TEASEILVMQHGHIA 528 (569)
T ss_pred HHHHh-CCCEEEEEecchhH------------------H-HcCCEEEEEeCCEEE
Confidence 33322 58999999996542 2 237888888766543
No 368
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=99.17 E-value=3e-12 Score=120.69 Aligned_cols=315 Identities=24% Similarity=0.236 Sum_probs=223.4
Q ss_pred CchHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 1 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
|+.+..+++.++++++..|+ .-.+.+....+...+..+++|-...+..++.+|.+.+..+..+++.-+||++..++...
T Consensus 3 ~~~~~~~~~~al~~~~~~~~-~~~~~~~~~ita~~v~~l~~~~l~~v~~l~~~~~~el~~i~~~s~~~~~k~~~~l~~~~ 81 (326)
T KOG1433|consen 3 MSQKRLALQKALEEIGLSPA-PVRFLLAGGITAEDVLLLSEGELSTVEGLAYAGKEELLLIIGLSEAKSGKTVLGLHKLV 81 (326)
T ss_pred hhHHHHHhhHHHHhcccCcc-chhhhhcccccHhhhhhhcccceEEEeccccCcchhheeeeeecccccccHHHHHHHhh
Confidence 35677899999999998877 54555555667788999999999999999889999999999999999999999999988
Q ss_pred H-HhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH-hcCCceEEEEecccc--cCCCCccCC
Q 017792 81 E-AQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI-RSGSVDVVVVDSVAA--LVPKGELDG 156 (366)
Q Consensus 81 ~-~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~-~~~~~~lvviDsl~~--l~~~~~l~~ 156 (366)
. +++.+..+.+.++....|+.+...++...-...+.+|.+....+-...... ..+..++++||+.+. +.+..++.+
T Consensus 82 ~~~~~~~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~~~~~~~~~ia~ 161 (326)
T KOG1433|consen 82 PMLQLRSELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTEIAG 161 (326)
T ss_pred HHHHhhccceeeccchhhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHhccCCcceEEEEecchhcccchhhhhhh
Confidence 6 366778888999999999888888888877888889988887766444332 567789999999995 333445555
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 157 EMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 157 ~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+...+..+.+.+....++..+.+.......++++|.+...-..+ +.....+..+| ...+.+..+........++..
T Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~~~~~~g-~~~~~a~~~~~~~~~~~l~~l 240 (326)
T KOG1433|consen 162 RSGLRGRDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALYRTTFKG-RGELSARQMLLAKFLRSLKKL 240 (326)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEeccccccccccccc-ccchHHHHHHHHHHHHHHHHH
Confidence 5555555555566655555555444444444466666544322211 33333455556 566666665554444445555
Q ss_pred ccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCcccccHHHHHHHHhhCHHH
Q 017792 236 EETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNFRGKEAFKQFLVENESV 315 (366)
Q Consensus 236 ~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (366)
.+..|..+ |++|...++.+.. +.|+. +....+......+.++.+.|.|| .++++..++.....+|.+++..
T Consensus 241 a~~~g~~v---vitn~v~~~~d~~---~~f~~--~~~~~~~~~~~~H~~~tr~~~~~-~~g~~~~~k~~~s~~l~e~~~~ 311 (326)
T KOG1433|consen 241 ADEFGVAV---VITNQVTAQVDGA---IMFGS--DPKKPIGGNIWAHAVTTRLGLRK-GKGERRICKIADSPCLPEAEAV 311 (326)
T ss_pred HHhcCceE---EEecccccccccc---cccCc--ccccccccchHHHHHHHHHHHHh-ccccchhhhhhcCCCCCcchhH
Confidence 55666654 8999998887655 55554 22333334444555566677777 6777789999999999999999
Q ss_pred HHHHHHHHHHH
Q 017792 316 REELVIKLREK 326 (366)
Q Consensus 316 ~~~l~~~~~~~ 326 (366)
++.+...+...
T Consensus 312 ~~i~~~g~~~~ 322 (326)
T KOG1433|consen 312 FAITEDGISDQ 322 (326)
T ss_pred HHHHhhhhhhh
Confidence 98888777654
No 369
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.17 E-value=7.4e-11 Score=124.44 Aligned_cols=153 Identities=17% Similarity=0.217 Sum_probs=99.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL------ 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l------ 125 (366)
+++|+.++|+|+||||||||++.+++.+.+..|. +++++.+..+ ..+++.+++++|+..++.. |+.+++
T Consensus 480 i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~-I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~~ 557 (694)
T TIGR01846 480 IKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQ-VLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNPG 557 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCCCC
Confidence 7899999999999999999999999999998886 6777765332 4677889999998776542 333332
Q ss_pred -------HHHHH-----HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 126 -------SLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 126 -------~~~~~-----~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+.+.. .+...... +|....-. ...+++ |++|+...||++.+.
T Consensus 558 ~~~~~i~~a~~~~~l~~~i~~lp~g---l~t~i~~~-g~~LSg--Gq~qri~lARall~~~~ililDEpts~LD~~~~~~ 631 (694)
T TIGR01846 558 APFEHVIHAAKLAGAHDFISELPQG---YNTEVGEK-GANLSG--GQRQRIAIARALVGNPRILIFDEATSALDYESEAL 631 (694)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCc---cCcEecCC-CCCCCH--HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHH
Confidence 22211 11111000 11111111 123444 899999999988764
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+....+ ..++|+|+++|..+. +. .||+++.|.++++...|
T Consensus 632 i~~~l~~~-~~~~t~i~itH~~~~------------------~~-~~d~ii~l~~G~i~~~g 673 (694)
T TIGR01846 632 IMRNMREI-CRGRTVIIIAHRLST------------------VR-ACDRIIVLEKGQIAESG 673 (694)
T ss_pred HHHHHHHH-hCCCEEEEEeCChHH------------------HH-hCCEEEEEeCCEEEEeC
Confidence 22323322 248999999996543 33 38999999887655444
No 370
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.2e-10 Score=114.64 Aligned_cols=158 Identities=21% Similarity=0.213 Sum_probs=103.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCC------------
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP------------ 118 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~------------ 118 (366)
-||+|+-++|+|+|||||||+++.+...+. +.|. +++|+.+... ..+++.+|++||+-.+++.
T Consensus 374 ~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~-I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~s 451 (591)
T KOG0057|consen 374 TIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGS-ILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPS 451 (591)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCc-EEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCC
Confidence 589999999999999999999999999888 6676 7899887654 4678889999997765543
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH---------------------HHHH
Q 017792 119 DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------------LRKL 177 (366)
Q Consensus 119 ~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------------L~~L 177 (366)
.+-+++++.....-- ++.-.-.-|..+.......+.-+.|++|+...+|++.+. ++.+
T Consensus 452 as~eeV~e~~k~a~~-hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i 530 (591)
T KOG0057|consen 452 ASDEEVVEACKRAGL-HDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMI 530 (591)
T ss_pred cCHHHHHHHHHHcCc-HHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHH
Confidence 244555555443210 000000012222222222222233899999999988764 3333
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.. ...+.|+|+|-|..+- ..-+|.++.++++.+...|
T Consensus 531 ~~--~~~~rTvI~IvH~l~l-------------------l~~~DkI~~l~nG~v~e~g 567 (591)
T KOG0057|consen 531 MD--VMSGRTVIMIVHRLDL-------------------LKDFDKIIVLDNGTVKEYG 567 (591)
T ss_pred HH--hcCCCeEEEEEecchh-------------------HhcCCEEEEEECCeeEEec
Confidence 33 2468999999996653 2347888888887644433
No 371
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.17 E-value=1.1e-10 Score=120.09 Aligned_cols=147 Identities=15% Similarity=0.123 Sum_probs=96.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH-HHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV-DTL-- 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~-~~~-- 131 (366)
+++|++++|+||||||||||++.+++.+.+.+|.+ +++. ...+|+.+|++.+....++.+.+... ..+
T Consensus 30 i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i-~~~~--------~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~ 100 (556)
T PRK11819 30 FFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA-RPAP--------GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKA 100 (556)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecC--------CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHH
Confidence 77999999999999999999999999988888875 4432 13589999988777777887776532 100
Q ss_pred ----Hh----c-CCc----------------------------------eEEEEecccccCCCCccCCccchhhHHHHHH
Q 017792 132 ----IR----S-GSV----------------------------------DVVVVDSVAALVPKGELDGEMGDAHMAMQAR 168 (366)
Q Consensus 132 ----~~----~-~~~----------------------------------~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar 168 (366)
.. . ... ..+-++.. -.+...+++ |++|+...|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~LSg--Gqkqrv~la~ 176 (556)
T PRK11819 101 ALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW--DAKVTKLSG--GERRRVALCR 176 (556)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcc--cCchhhcCH--HHHHHHHHHH
Confidence 00 0 000 00001100 011234544 8888888888
Q ss_pred HHHHH-----------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 169 LMSQA-----------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 169 ~l~~~-----------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+++.. ...+...+++.+.|||+++|..+. +..+||+++.|+++.+
T Consensus 177 al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~------------------~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 177 LLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYF------------------LDNVAGWILELDRGRG 238 (556)
T ss_pred HHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHH------------------HHhhcCeEEEEeCCEE
Confidence 87653 444445555566799999998765 4556788888887765
Q ss_pred e
Q 017792 232 V 232 (366)
Q Consensus 232 ~ 232 (366)
+
T Consensus 239 ~ 239 (556)
T PRK11819 239 I 239 (556)
T ss_pred E
Confidence 3
No 372
>PRK13409 putative ATPase RIL; Provisional
Probab=99.16 E-value=3.7e-11 Score=123.82 Aligned_cols=144 Identities=16% Similarity=0.209 Sum_probs=94.3
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+-+.+|++++|+||||||||||++.+++...+..|.+ +++ ..++|.+|+.......++.+++.......
T Consensus 360 ~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I-~~~----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~ 428 (590)
T PRK13409 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV-DPE----------LKISYKPQYIKPDYDGTVEDLLRSITDDL 428 (590)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EEe----------eeEEEecccccCCCCCcHHHHHHHHhhhc
Confidence 4578999999999999999999999999988877864 443 15788888876666667777765431110
Q ss_pred hcC-----CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh-cCc
Q 017792 133 RSG-----SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL-SQT 186 (366)
Q Consensus 133 ~~~-----~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~-~~~ 186 (366)
... -...+-++..... +-..+++ |++|+...||+++.. +.++.+.+.+ .+.
T Consensus 429 ~~~~~~~~~L~~l~l~~~~~~-~~~~LSG--Ge~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 505 (590)
T PRK13409 429 GSSYYKSEIIKPLQLERLLDK-NVKDLSG--GELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREA 505 (590)
T ss_pred ChHHHHHHHHHHCCCHHHHhC-CcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 000 0001111111111 1244555 888888888877654 5555544433 589
Q ss_pred EEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 187 ILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 187 tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
|||+++|.... +..+||+++.|..
T Consensus 506 tviivsHD~~~------------------~~~~aDrvivl~~ 529 (590)
T PRK13409 506 TALVVDHDIYM------------------IDYISDRLMVFEG 529 (590)
T ss_pred EEEEEeCCHHH------------------HHHhCCEEEEEcC
Confidence 99999997764 5567888888864
No 373
>PLN03130 ABC transporter C family member; Provisional
Probab=99.16 E-value=8e-11 Score=133.41 Aligned_cols=153 Identities=16% Similarity=0.195 Sum_probs=104.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHH-----
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL----- 125 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l----- 125 (366)
-|++|+.++|+|++|||||||++.+.+.+.+..|. +++|+.+..+ ..+++++++++|++.++.. |+.+++
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~-I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~ 1338 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR-ILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNE 1338 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCce-EEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCCC
Confidence 37899999999999999999999999999988886 7888876543 4678899999999877653 343332
Q ss_pred -------HHHHH-----HHhcCCceEEEEecccccCCC--CccCCccchhhHHHHHHHHHHH------------------
Q 017792 126 -------SLVDT-----LIRSGSVDVVVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA------------------ 173 (366)
Q Consensus 126 -------~~~~~-----~~~~~~~~lvviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~------------------ 173 (366)
+.++. .+.... +.+...... ..+++ |++|+...||++.+.
T Consensus 1339 ~tdeei~~Al~~a~l~~~I~~lp------~GLdt~Vge~G~nLSg--GQrQrlaLARALLr~p~ILILDEATSaLD~~Te 1410 (1622)
T PLN03130 1339 HNDADLWESLERAHLKDVIRRNS------LGLDAEVSEAGENFSV--GQRQLLSLARALLRRSKILVLDEATAAVDVRTD 1410 (1622)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCc------cccCccccCCCCCCCH--HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHH
Confidence 22221 111110 112222212 23443 899999999998765
Q ss_pred --HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 --LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 --L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.+..+.. ..++|||+|+|..+. +. .||+++.|++|+++..|+
T Consensus 1411 ~~Iq~~I~~~-~~~~TvI~IAHRL~t------------------I~-~~DrIlVLd~G~IvE~Gt 1455 (1622)
T PLN03130 1411 ALIQKTIREE-FKSCTMLIIAHRLNT------------------II-DCDRILVLDAGRVVEFDT 1455 (1622)
T ss_pred HHHHHHHHHH-CCCCEEEEEeCChHH------------------HH-hCCEEEEEECCEEEEeCC
Confidence 33333332 248999999997653 33 279999999888766654
No 374
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.16 E-value=9.4e-11 Score=121.05 Aligned_cols=153 Identities=17% Similarity=0.211 Sum_probs=97.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHH--------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQ-------- 123 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~-------- 123 (366)
+++|+.++|+|+||||||||++.+++.+.+..|. +++++.+.. ...+.+.+++.+|++.+++. |+.+
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~-I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~~ 440 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGR-ILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGRPD 440 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE-EEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCCCC
Confidence 7799999999999999999999999999988886 567764432 24667789999998876532 2322
Q ss_pred -----HHHHHHH-----HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 124 -----ALSLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 124 -----~l~~~~~-----~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+.+.+.. .+...... +|..-.-. ...+++ |++|+...||++.+.
T Consensus 441 ~~~~~~~~~l~~~~l~~~i~~l~~g---l~t~i~~~-g~~LSg--Gq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~ 514 (576)
T TIGR02204 441 ATDEEVEAAARAAHAHEFISALPEG---YDTYLGER-GVTLSG--GQRQRIAIARAILKDAPILLLDEATSALDAESEQL 514 (576)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCCCC---CCceeCCC-CCcCCH--HHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHH
Confidence 2222211 11111000 11110000 123444 899999999998764
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+....+. .++|+|+++|..+. ...+|+++.+.++++...|
T Consensus 515 i~~~l~~~~-~~~t~IiitH~~~~-------------------~~~~d~vi~l~~g~~~~~g 556 (576)
T TIGR02204 515 VQQALETLM-KGRTTLIIAHRLAT-------------------VLKADRIVVMDQGRIVAQG 556 (576)
T ss_pred HHHHHHHHh-CCCEEEEEecchHH-------------------HHhCCEEEEEECCEEEeee
Confidence 333333332 48999999996542 2358999999877654433
No 375
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=5.5e-11 Score=121.62 Aligned_cols=147 Identities=21% Similarity=0.261 Sum_probs=93.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcce--ecCCCCHHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLL--LAQPDCGEQALSLVDT-- 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~--~~~~~~~e~~l~~~~~-- 130 (366)
+++|++++|+||||||||||++.+++...+..|.+ +++.. ..+||.+|+.. +....++.+.+.....
T Consensus 342 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~--------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~ 412 (530)
T PRK15064 342 LEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV-KWSEN--------ANIGYYAQDHAYDFENDLTLFDWMSQWRQEG 412 (530)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCc--------eEEEEEcccccccCCCCCcHHHHHHHhccCC
Confidence 67999999999999999999999999888777764 45431 46888888753 3344566665532210
Q ss_pred ----HHhcCCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHhhhcCcEE
Q 017792 131 ----LIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSLSLSQTIL 188 (366)
Q Consensus 131 ----~~~~~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l~~~~~tV 188 (366)
.+.. -...+-+. .... .+...+++ |++|+...||+++.. ...+...+++.+.||
T Consensus 413 ~~~~~~~~-~l~~~~l~~~~~~-~~~~~LSg--Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tv 488 (530)
T PRK15064 413 DDEQAVRG-TLGRLLFSQDDIK-KSVKVLSG--GEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTL 488 (530)
T ss_pred ccHHHHHH-HHHHcCCChhHhc-CcccccCH--HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 0000 00000010 0111 11234444 788888888877653 344444455567799
Q ss_pred EEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 189 IFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 189 I~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
|+++|.... +..+||+++.|.++.++
T Consensus 489 i~vsHd~~~------------------~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 489 IFVSHDREF------------------VSSLATRIIEITPDGVV 514 (530)
T ss_pred EEEeCCHHH------------------HHHhCCEEEEEECCeEE
Confidence 999998764 55678999888876543
No 376
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.16 E-value=1e-10 Score=120.10 Aligned_cols=155 Identities=16% Similarity=0.180 Sum_probs=96.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHH---H-HHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQ---A-LSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~---~-l~~ 127 (366)
+++|+.++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+.+.+++.+|+..+++..-.+. . -+.
T Consensus 346 i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~ 424 (547)
T PRK10522 346 IKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE-ILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPAL 424 (547)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHH
Confidence 6899999999999999999999999999888886 6667654332 356778999999886654311100 0 011
Q ss_pred HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------H-HHHHHHhhhcCc
Q 017792 128 VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L-RKLSHSLSLSQT 186 (366)
Q Consensus 128 ~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L-~~L~~~l~~~~~ 186 (366)
+...+........ ++..........+++ |++|+...||++.+. + ..+...+++.++
T Consensus 425 ~~~~~~~~~l~~~-~~~~~~~~~G~~LSg--Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~ 501 (547)
T PRK10522 425 VEKWLERLKMAHK-LELEDGRISNLKLSK--GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGK 501 (547)
T ss_pred HHHHHHHcCCchh-hhccccCCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 1222221111110 000000011134554 899999999988764 2 233333334589
Q ss_pred EEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 187 ILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 187 tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
|+|+++|..+ ....||+++.|+++++.
T Consensus 502 tvi~itH~~~-------------------~~~~~d~i~~l~~G~i~ 528 (547)
T PRK10522 502 TIFAISHDDH-------------------YFIHADRLLEMRNGQLS 528 (547)
T ss_pred EEEEEEechH-------------------HHHhCCEEEEEECCEEE
Confidence 9999999643 22358999999877644
No 377
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.15 E-value=7.9e-11 Score=121.49 Aligned_cols=148 Identities=15% Similarity=0.175 Sum_probs=96.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQAL------ 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l------ 125 (366)
+++|+.++|+|++|||||||++.+++.+.+..|. +++++.+.. ...+.+.+++.+|++.++.. |+.+++
T Consensus 355 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~-I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~ 432 (571)
T TIGR02203 355 IEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQ-ILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRTE 432 (571)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCe-EEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCCC
Confidence 6799999999999999999999999999998886 677765432 24677889999998876543 333322
Q ss_pred --------HHHHH-----HHhcCCceEEEEecccccCC--CCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 126 --------SLVDT-----LIRSGSVDVVVVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 126 --------~~~~~-----~~~~~~~~lvviDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.+.. .+.+.. +.+..... ...+++ |++|+...||++.+.
T Consensus 433 ~~~~~~i~~~l~~~~l~~~i~~lp------~gldt~i~~~g~~LSg--GqrQRiaLARall~~~~illLDEpts~LD~~~ 504 (571)
T TIGR02203 433 QADRAEIERALAAAYAQDFVDKLP------LGLDTPIGENGVLLSG--GQRQRLAIARALLKDAPILILDEATSALDNES 504 (571)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCc------CcccceecCCCCcCCH--HHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 22211 111111 11111111 123444 899999999988764
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+.+....+ ..++|+|+++|..+ +...||.++.++.+++.
T Consensus 505 ~~~i~~~L~~~-~~~~tiIiitH~~~-------------------~~~~~D~ii~l~~g~i~ 546 (571)
T TIGR02203 505 ERLVQAALERL-MQGRTTLVIAHRLS-------------------TIEKADRIVVMDDGRIV 546 (571)
T ss_pred HHHHHHHHHHH-hCCCEEEEEehhhH-------------------HHHhCCEEEEEeCCEEE
Confidence 33333322 24799999999653 34568999999766543
No 378
>PLN03232 ABC transporter C family member; Provisional
Probab=99.15 E-value=1e-10 Score=132.13 Aligned_cols=151 Identities=11% Similarity=0.170 Sum_probs=102.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL------ 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l------ 125 (366)
+++|+.++|+|++|||||||++.+.+.+.+.+|. +++|+.+..+ ..+++++++++|++.+++. |+.+++
T Consensus 1259 I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~-I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~~~ 1336 (1495)
T PLN03232 1259 VSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGR-IMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFSEH 1336 (1495)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCce-EEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCCCC
Confidence 7899999999999999999999999999988886 7888765433 4678899999999887753 444333
Q ss_pred ------HHHHH-----HHhcCCceEEEEecccccCCC--CccCCccchhhHHHHHHHHHHH-------------------
Q 017792 126 ------SLVDT-----LIRSGSVDVVVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 126 ------~~~~~-----~~~~~~~~lvviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+.++. .+.... +.+...... ..+++ |++|+...||++.+.
T Consensus 1337 sdeei~~al~~a~l~~~I~~lp------~GLdt~v~e~G~~LSg--GQrQrlaLARALLr~~~ILILDEATSaLD~~Te~ 1408 (1495)
T PLN03232 1337 NDADLWEALERAHIKDVIDRNP------FGLDAEVSEGGENFSV--GQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408 (1495)
T ss_pred CHHHHHHHHHHcCCHHHHHhCc------CCCCceecCCCCCCCH--HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 22221 111110 112222211 23444 899999999998775
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+..+.. ..++|||+|+|..+. +. .||+++.|++|+++..|
T Consensus 1409 ~Iq~~L~~~-~~~~TvI~IAHRl~t------------------i~-~~DrIlVL~~G~ivE~G 1451 (1495)
T PLN03232 1409 LIQRTIREE-FKSCTMLVIAHRLNT------------------II-DCDKILVLSSGQVLEYD 1451 (1495)
T ss_pred HHHHHHHHH-cCCCEEEEEeCCHHH------------------HH-hCCEEEEEECCEEEEEC
Confidence 33333322 248999999997643 32 37999999887655443
No 379
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.15 E-value=1.5e-10 Score=123.88 Aligned_cols=157 Identities=20% Similarity=0.269 Sum_probs=102.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCC------------C
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP------------D 119 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~------------~ 119 (366)
+|+|+.++|+|++||||||+...+.+.+.|..|. +++|+++..+ +.++.++|++.|.+.++.. .
T Consensus 376 i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~-V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~da 454 (1228)
T KOG0055|consen 376 IPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE-VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDA 454 (1228)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce-EEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcc
Confidence 7999999999999999999999999999998886 8999887654 4567789999998754432 1
Q ss_pred CHHHHHHHHHHHHhcCCceEEEEecccccCCC--CccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 120 CGEQALSLVDTLIRSGSVDVVVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 120 ~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
|.+++.+..+ +......-.-..+....+... .+++| |++||..+||++.+. +...
T Consensus 455 t~~~i~~a~k-~ana~~fi~~lp~g~~T~vge~g~qLSG--GQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~A 531 (1228)
T KOG0055|consen 455 TREEIEEAAK-AANAHDFILKLPDGYDTLVGERGVQLSG--GQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEA 531 (1228)
T ss_pred cHHHHHHHHH-HccHHHHHHhhHHhhcccccCCCCCCCh--HHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHH
Confidence 2223222221 110111111112233333322 33555 899999999998775 3333
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+ ..|.|-|+++|..+. +.. +|.++.+++++++..|
T Consensus 532 Ld~~-~~grTTivVaHRLSt------------------Irn-aD~I~v~~~G~IvE~G 569 (1228)
T KOG0055|consen 532 LDKA-SKGRTTIVVAHRLST------------------IRN-ADKIAVMEEGKIVEQG 569 (1228)
T ss_pred HHHh-hcCCeEEEEeeehhh------------------hhc-cCEEEEEECCEEEEec
Confidence 3332 247799999997765 333 7777788777766654
No 380
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.13 E-value=1.8e-10 Score=106.80 Aligned_cols=146 Identities=16% Similarity=0.179 Sum_probs=84.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE----------EEeCCCCCCH--HHHh---hcccccCcceecCCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV----------FIDAEHALDP--SLAE---TIGVKTENLLLAQPD 119 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl----------~id~e~~~~~--~~~~---~ig~~~~~~~~~~~~ 119 (366)
+.+|++++|+||||||||||++.+++.+.+..|.+. ++++...... ...+ .+++.++.+.....
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 101 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK- 101 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-
Confidence 679999999999999999999999999998888754 2444332211 1111 24555555443321
Q ss_pred CHHH-HH---------HHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 120 CGEQ-AL---------SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 120 ~~e~-~l---------~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
++.+ +. ..+..++..... +...... ...+++ |++|+...+|+++..
T Consensus 102 ~~~~~i~~~l~~~~~~~~~~~~l~~~gl-----~~~~~~~-~~~LS~--G~~qrv~laral~~~p~illlDEPts~LD~~ 173 (255)
T cd03236 102 AVKGKVGELLKKKDERGKLDELVDQLEL-----RHVLDRN-IDQLSG--GELQRVAIAAALARDADFYFFDEPSSYLDIK 173 (255)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHHcCC-----chhhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 1111 11 111111211111 1111111 123333 777777777776643
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
+..+.+.+++.+++||+++|.... +..+||.++.|+
T Consensus 174 ~~~~l~~~l~~l~~~~~tIIiiSHd~~~------------------~~~~ad~i~~l~ 213 (255)
T cd03236 174 QRLNAARLIRELAEDDNYVLVVEHDLAV------------------LDYLSDYIHCLY 213 (255)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEECCHHH------------------HHHhCCEEEEEC
Confidence 445555555568999999997754 455688887775
No 381
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.13 E-value=8.8e-11 Score=117.52 Aligned_cols=40 Identities=33% Similarity=0.463 Sum_probs=34.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
-+++|++++|+|+||||||||++.+++...+..|. +++++
T Consensus 46 sI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGe-I~I~G 85 (549)
T PRK13545 46 EVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGT-VDIKG 85 (549)
T ss_pred EEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceE-EEECC
Confidence 47899999999999999999999999998887776 45554
No 382
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.12 E-value=1.3e-09 Score=95.31 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=77.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC-CC---------HHHHhhcccccCcc-eecCCCCH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD---------PSLAETIGVKTENL-LLAQPDCG-- 121 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~-~~---------~~~~~~ig~~~~~~-~~~~~~~~-- 121 (366)
+++|++++|.||||||||||++.+.. ..|.+. +..... .. ....+.+++..... ......+.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~-~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq 92 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKAR-LISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGE 92 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEE-ECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHH
Confidence 67999999999999999999987642 344433 332211 10 12334444321100 01112233
Q ss_pred HHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccc
Q 017792 122 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTF 201 (366)
Q Consensus 122 e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~ 201 (366)
.+-+.++..++..+.++++++|....-... ...+.+.+.|+.+ .+.+.|||+++|..+.
T Consensus 93 ~qrl~laral~~~~~p~llLlDEPt~~LD~-------------~~~~~l~~~l~~~----~~~g~tvIivSH~~~~---- 151 (176)
T cd03238 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQ-------------QDINQLLEVIKGL----IDLGNTVILIEHNLDV---- 151 (176)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCCcccCCH-------------HHHHHHHHHHHHH----HhCCCEEEEEeCCHHH----
Confidence 233445555555444899999998776520 1122333344433 3469999999997653
Q ss_pred cCCCCeeeccCCceeeeeceEEEEEEEec
Q 017792 202 GFGGPTEVTCGGNALKFYASVRLNIKRIG 230 (366)
Q Consensus 202 ~~~~~~~~~~gG~~l~~~ad~~i~l~~~~ 230 (366)
+. .||+++.|.++.
T Consensus 152 --------------~~-~~d~i~~l~~g~ 165 (176)
T cd03238 152 --------------LS-SADWIIDFGPGS 165 (176)
T ss_pred --------------HH-hCCEEEEECCCC
Confidence 32 478888886643
No 383
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.11 E-value=8.2e-11 Score=110.58 Aligned_cols=144 Identities=16% Similarity=0.196 Sum_probs=84.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV------ 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~------ 128 (366)
+++|++++|+|+||||||||++.+++.+.+..|.+ ++++ .++|.+|+..+++. ++.+.+...
T Consensus 60 i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I-~i~g----------~i~yv~q~~~l~~~-tv~enl~~~~~~~~~ 127 (282)
T cd03291 60 IEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI-KHSG----------RISFSSQFSWIMPG-TIKENIIFGVSYDEY 127 (282)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECC----------EEEEEeCccccccc-CHHHHhhcccccCHH
Confidence 78999999999999999999999999888877764 4443 36666666554432 444443221
Q ss_pred --HHHHhcCCceEEEEeccc----ccC--CCCccCCccchhhHHHHHHHHHHH--------------------HHH-HHH
Q 017792 129 --DTLIRSGSVDVVVVDSVA----ALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LRK-LSH 179 (366)
Q Consensus 129 --~~~~~~~~~~lvviDsl~----~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~-L~~ 179 (366)
..........- .++.+. ... +...+++ |++++...||+++.. +.. +..
T Consensus 128 ~~~~~l~~~~l~~-~l~~~~~~~~~~~~~~~~~LSg--Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~ 204 (282)
T cd03291 128 RYKSVVKACQLEE-DITKFPEKDNTVLGEGGITLSG--GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVC 204 (282)
T ss_pred HHHHHHHHhCCHH-HHHhccccccceecCCCCcCCH--HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 00011000000 000000 000 0123433 778888888777653 322 222
Q ss_pred HhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 180 SLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 180 ~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
.+. .+.|||+++|.... +. .||+++.|.++.+..
T Consensus 205 ~~~-~~~tIiiisH~~~~------------------~~-~~d~i~~l~~G~i~~ 238 (282)
T cd03291 205 KLM-ANKTRILVTSKMEH------------------LK-KADKILILHEGSSYF 238 (282)
T ss_pred Hhh-CCCEEEEEeCChHH------------------HH-hCCEEEEEECCEEEE
Confidence 332 47999999997653 22 478888888765433
No 384
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.7e-10 Score=111.17 Aligned_cols=154 Identities=23% Similarity=0.297 Sum_probs=103.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC--CCCHHHHhhcccccCcceecC-----------CC-
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH--ALDPSLAETIGVKTENLLLAQ-----------PD- 119 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~--~~~~~~~~~ig~~~~~~~~~~-----------~~- 119 (366)
-+.+|+-+.|+|++|||||||+..+++.+.++.|.+.+-+.+- ..++.+.+.+++..|+.+++. +.
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~A 439 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDA 439 (573)
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCC
Confidence 3779999999999999999999999999999988855444332 223468889999888776543 32
Q ss_pred CHHHHHHHHHH-----HHhcCCceEEEEecccccCCC--CccCCccchhhHHHHHHHHHHH-------------------
Q 017792 120 CGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 120 ~~e~~l~~~~~-----~~~~~~~~lvviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+.|++.+.+.+ ++.... |.+...... ..++| |++++-..||.+.+.
T Consensus 440 sDEel~~aL~qvgL~~l~~~~p------~gl~t~lge~G~~LSG--GE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~ 511 (573)
T COG4987 440 SDEELWAALQQVGLEKLLESAP------DGLNTWLGEGGRRLSG--GERRRLALARALLHDAPLWLLDEPTEGLDPITER 511 (573)
T ss_pred CHHHHHHHHHHcCHHHHHHhCh------hhhhchhccCCCcCCc--hHHHHHHHHHHHHcCCCeEEecCCcccCChhhHH
Confidence 44555554433 222111 122222222 23444 888888888887664
Q ss_pred --HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 --LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 --L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
|..+...+ .+.|+|++||....+ ..+|+++.|+.++++.+|+
T Consensus 512 ~vL~ll~~~~--~~kTll~vTHrL~~l-------------------e~~drIivl~~Gkiie~G~ 555 (573)
T COG4987 512 QVLALLFEHA--EGKTLLMVTHRLRGL-------------------ERMDRIIVLDNGKIIEEGT 555 (573)
T ss_pred HHHHHHHHHh--cCCeEEEEecccccH-------------------hhcCEEEEEECCeeeecCC
Confidence 44444433 489999999976542 3479999999988777764
No 385
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.10 E-value=2.1e-10 Score=119.86 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=105.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHH----HhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSL----AETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~----~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++.... ..+ .+.+++.+|+..+++..++.+.+..
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 109 (648)
T PRK10535 31 IYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT-YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEV 109 (648)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHH
Confidence 6799999999999999999999999998888887 5667665332 222 3568999999887777777665543
Q ss_pred HHHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
........ -.+.+-++...... ...+++ |++|+...||+++.. +.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~-~~~LS~--Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~l 186 (648)
T PRK10535 110 PAVYAGLERKQRLLRAQELLQRLGLEDRVEYQ-PSQLSG--GQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAI 186 (648)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCChhhhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 21100000 00011111111111 133443 788888888887654 6666
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
...+++.+.|+|+++|..+. +. .||+++.|.++++...++
T Consensus 187 l~~l~~~g~tilivsH~~~~------------------~~-~~d~i~~l~~G~i~~~g~ 226 (648)
T PRK10535 187 LHQLRDRGHTVIIVTHDPQV------------------AA-QAERVIEIRDGEIVRNPP 226 (648)
T ss_pred HHHHHhcCCEEEEECCCHHH------------------HH-hCCEEEEEECCEEEeecC
Confidence 66666679999999997643 33 489999999888766654
No 386
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.10 E-value=1.9e-10 Score=103.82 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=34.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+++|++++|.||||||||||++.+++...+..|.+..++.
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~ 49 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRG 49 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecC
Confidence 6799999999999999999999999998888887643443
No 387
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.10 E-value=2.8e-10 Score=116.90 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=96.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHH--
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL-- 131 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~-- 131 (366)
=+++|++++|+|+||||||||++.+++...+..|.+ +++. ...+|+.+|++.++...|+.+.+......
T Consensus 27 ~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i-~~~~--------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~ 97 (552)
T TIGR03719 27 SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA-RPAP--------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIK 97 (552)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecC--------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHH
Confidence 378999999999999999999999999988877874 4432 13689999988777777887776542100
Q ss_pred ------------HhcCCce----------------EE-----------EEecc--cc-cCCCCccCCccchhhHHHHHHH
Q 017792 132 ------------IRSGSVD----------------VV-----------VVDSV--AA-LVPKGELDGEMGDAHMAMQARL 169 (366)
Q Consensus 132 ------------~~~~~~~----------------lv-----------viDsl--~~-l~~~~~l~~~~g~~~~~~~ar~ 169 (366)
....... .+ +++.+ .. -.+...+++ |++++...|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSg--Gqkqrv~la~a 175 (552)
T TIGR03719 98 DALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSG--GERRRVALCRL 175 (552)
T ss_pred HHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCH--HHHHHHHHHHH
Confidence 0000000 00 00000 00 011234444 88888888888
Q ss_pred HHHH-----------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 170 MSQA-----------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 170 l~~~-----------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
++.. ...+...+++.+.|||+++|.... +..+||.++.|+++.++
T Consensus 176 l~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~------------------~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 176 LLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYF------------------LDNVAGWILELDRGRGI 237 (552)
T ss_pred HhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHH------------------HHhhcCeEEEEECCEEE
Confidence 7653 334444455566799999998765 45567888888877643
No 388
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.09 E-value=2.7e-10 Score=129.00 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=103.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
+++|+.++|+|++|||||||+..+.+.+.+.+|. +++|+.+..+ ..+++++++.+|++.++.. |+.+++..
T Consensus 1309 I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~-I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~~~ 1386 (1522)
T TIGR00957 1309 IHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGE-IIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFSQY 1386 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCe-EEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCcccCC
Confidence 7899999999999999999999999999888886 7888876543 4678899999999887753 34333321
Q ss_pred ----HHHHHhcCCceEEE---EecccccCCC--CccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 128 ----VDTLIRSGSVDVVV---VDSVAALVPK--GELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 128 ----~~~~~~~~~~~lvv---iDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
+...++.-+..-.+ -+.+...... ..+++ |++|+...||++.+. +.+..
T Consensus 1387 sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg--GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l 1464 (1522)
T TIGR00957 1387 SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSV--GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTI 1464 (1522)
T ss_pred CHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 11111110110000 0112222211 23443 899999999998775 33333
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.. ..++|||+|+|..+. +. .+|+++.|++|+++..|+
T Consensus 1465 ~~~-~~~~TvI~IAHRl~t------------------i~-~~DrIlVld~G~IvE~G~ 1502 (1522)
T TIGR00957 1465 RTQ-FEDCTVLTIAHRLNT------------------IM-DYTRVIVLDKGEVAEFGA 1502 (1522)
T ss_pred HHH-cCCCEEEEEecCHHH------------------HH-hCCEEEEEECCEEEEECC
Confidence 221 248999999996643 22 379999999877655543
No 389
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.09 E-value=1.5e-10 Score=118.44 Aligned_cols=136 Identities=24% Similarity=0.303 Sum_probs=84.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CHHHHhhcccccCcceecCCCCHHHHHHH-----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSL----- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~~~~~~ig~~~~~~~~~~~~~~e~~l~~----- 127 (366)
+++|+.++|+||+|||||||++.+++.+.+..|. +++++.+.. ...+++.+++++|++.+++. |+.+++..
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~-I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~~~ 435 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGE-VTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRPDA 435 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccCCCC
Confidence 7899999999999999999999999999988887 677764322 45677889999998877643 33333221
Q ss_pred ----HHHHHhcCCceE---EEEecccccCCC--CccCCccchhhHHHHHHHHHHH-----------------HHHHHHHh
Q 017792 128 ----VDTLIRSGSVDV---VVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSL 181 (366)
Q Consensus 128 ----~~~~~~~~~~~l---vviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l 181 (366)
+.+.++.-+.+- -.-|.+...... ..+++ |++|+...||++.+. =..+.+.+
T Consensus 436 ~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG--GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l 513 (529)
T TIGR02868 436 TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSG--GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL 513 (529)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 111111101100 001122222212 23444 899999999988764 12222222
Q ss_pred h--hcCcEEEEEecC
Q 017792 182 S--LSQTILIFINQV 194 (366)
Q Consensus 182 ~--~~~~tVI~i~h~ 194 (366)
. ..++|+|+++|.
T Consensus 514 ~~~~~~~TvIiItHr 528 (529)
T TIGR02868 514 LAALSGKTVVVITHH 528 (529)
T ss_pred HHhcCCCEEEEEecC
Confidence 2 247899999994
No 390
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.09 E-value=3.6e-10 Score=114.54 Aligned_cols=151 Identities=15% Similarity=0.177 Sum_probs=91.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCC---C-HHHHhhcccccCcceecC--CCCHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHAL---D-PSLAETIGVKTENLLLAQ--PDCGEQALS 126 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~---~-~~~~~~ig~~~~~~~~~~--~~~~e~~l~ 126 (366)
-+++|++++|+||||||||||++.+++...+ ..|. +++++.... . ..+.+.+++.+|+..+.. ..++++++.
T Consensus 282 ~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~ 360 (490)
T PRK10938 282 QVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSND-LTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVIL 360 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCe-EEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHH
Confidence 3779999999999999999999999996543 3676 556654321 1 234567899888754322 234555432
Q ss_pred HH-------------------HHHHhcCCceEEEEec-ccccCCCCccCCccchhhHHHHHHHHHHH-------------
Q 017792 127 LV-------------------DTLIRSGSVDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMSQA------------- 173 (366)
Q Consensus 127 ~~-------------------~~~~~~~~~~lvviDs-l~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------- 173 (366)
.. ..++. .+-++. ..... ...+++ |++|+...||+++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~-~~~LSg--Gq~qrv~la~al~~~p~lllLDEPt~gL 432 (490)
T PRK10938 361 SGFFDSIGIYQAVSDRQQKLAQQWLD-----ILGIDKRTADAP-FHSLSW--GQQRLALIVRALVKHPTLLILDEPLQGL 432 (490)
T ss_pred hccccccccccCCCHHHHHHHHHHHH-----HcCCchhhccCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCccccC
Confidence 11 11111 111111 11111 234444 788888888887654
Q ss_pred -------HHHHHHHhhhcC-cEEEEEecCCcccccccCCCCeeeccCCceeee-eceEEEEEEEece
Q 017792 174 -------LRKLSHSLSLSQ-TILIFINQVRAKLSTFGFGGPTEVTCGGNALKF-YASVRLNIKRIGL 231 (366)
Q Consensus 174 -------L~~L~~~l~~~~-~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~-~ad~~i~l~~~~~ 231 (366)
+..+...+.+.+ +|||+++|..+. +.. +||+++.|+++++
T Consensus 433 D~~~~~~l~~~L~~l~~~~~~tviivsHd~~~------------------~~~~~~d~v~~l~~G~i 481 (490)
T PRK10938 433 DPLNRQLVRRFVDVLISEGETQLLFVSHHAED------------------APACITHRLEFVPDGDI 481 (490)
T ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecchhh------------------hhhhhheeEEEecCCce
Confidence 555555554444 579999998764 333 5788888877653
No 391
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.08 E-value=1.5e-10 Score=120.82 Aligned_cols=145 Identities=17% Similarity=0.226 Sum_probs=89.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcc-eecCCCCHHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL-LLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~-~~~~~~~~e~~l~~~~~~~ 132 (366)
-+.+|++++|+||||||||||++.+++.+.+..|.+ +++. . -.+||.+|+. .+....++.+.+.......
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i-~~~~-~-------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~ 411 (635)
T PRK11147 341 QVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI-HCGT-K-------LEVAYFDQHRAELDPEKTVMDNLAEGKQEV 411 (635)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECC-C-------cEEEEEeCcccccCCCCCHHHHHHhhcccc
Confidence 378999999999999999999999999888878875 4432 1 1578877764 3445557766654321100
Q ss_pred hcCC--------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHhhhcCcE
Q 017792 133 RSGS--------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSLSLSQTI 187 (366)
Q Consensus 133 ~~~~--------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l~~~~~t 187 (366)
.... ...+-+..-..-.+...+++ |++++...|+++... ...|...+++++.|
T Consensus 412 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--GekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~t 489 (635)
T PRK11147 412 MVNGRPRHVLGYLQDFLFHPKRAMTPVKALSG--GERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGT 489 (635)
T ss_pred cccchHHHHHHHHHhcCCCHHHHhChhhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 0000 00000000000011234444 777777777776653 44455555666789
Q ss_pred EEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 188 LIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 188 VI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
||+++|.+.. +..+||+++.+.
T Consensus 490 vi~vSHd~~~------------------~~~~~d~i~~l~ 511 (635)
T PRK11147 490 VLLVSHDRQF------------------VDNTVTECWIFE 511 (635)
T ss_pred EEEEECCHHH------------------HHHhcCEEEEEe
Confidence 9999998765 455678888876
No 392
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=6.3e-10 Score=98.91 Aligned_cols=162 Identities=18% Similarity=0.225 Sum_probs=92.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEeCCCCCC---HHHH-hhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHALD---PSLA-ETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~~gg~vl~id~e~~~~---~~~~-~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++.+|.||||||||||+..+++.-. ...|. +.+++++..+ .+++ .-+.+.+|++.=++..+..+++...
T Consensus 27 v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~-I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a 105 (251)
T COG0396 27 VKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGE-ILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAA 105 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecce-EEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHH
Confidence 67999999999999999999999988542 34666 6778887655 2333 3355667776655555555554433
Q ss_pred HHHHhcCC-------------ceEEEEec-ccccCCCCccCCccchhhHHHHHHHHHHH--------------------H
Q 017792 129 DTLIRSGS-------------VDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 174 (366)
Q Consensus 129 ~~~~~~~~-------------~~lvviDs-l~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L 174 (366)
....+..+ ...+-+|. ...-.-...+++ |++.+....+.+... +
T Consensus 106 ~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSG--GEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V 183 (251)
T COG0396 106 MNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSG--GEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIV 183 (251)
T ss_pred HHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCc--chHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHH
Confidence 22211110 11111222 000000223333 555444443332221 4
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeee-ceEEEEEEEeceeecCcc
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFY-ASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~-ad~~i~l~~~~~~~~~~~ 237 (366)
-+....++..+.++++|||..+- +.|+ .|.+-.|.+++++++|++
T Consensus 184 ~~~i~~lr~~~~~~liITHy~rl------------------l~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 184 AEGINALREEGRGVLIITHYQRL------------------LDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHHHHHhcCCCeEEEEecHHHH------------------HhhcCCCEEEEEECCEEEecCCH
Confidence 44455566789999999997653 2222 377777777777777654
No 393
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.07 E-value=7e-10 Score=124.75 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=56.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE-eCCCC--CC-HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI-DAEHA--LD-PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i-d~e~~--~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
-+++|++++|+||||||||||++.+++.+.+..|. +++ ++.+. .+ ..+++.+|+++|++.++. .|+.+++..
T Consensus 407 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~-I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~ 482 (1466)
T PTZ00265 407 TLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGD-IIINDSHNLKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKY 482 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCe-EEEeCCcchhhCCHHHHHHhccEecccccchh-ccHHHHHHh
Confidence 37899999999999999999999999999998887 556 43322 22 345678999999988775 477777654
No 394
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.07 E-value=1.7e-09 Score=92.93 Aligned_cols=156 Identities=21% Similarity=0.200 Sum_probs=93.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceec--CCCCHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA--QPDCGEQALS--- 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~--~~~~~e~~l~--- 126 (366)
+.+|+.++|.|.||||||||++.+++.+.+.+|++ .++.+.... ..+++++.+.+|++... +...+-++++
T Consensus 36 L~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~i-l~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL 114 (267)
T COG4167 36 LREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEI-LINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPL 114 (267)
T ss_pred ecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceE-EECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchh
Confidence 45889999999999999999999999999999985 455544322 35677888888765321 1112222221
Q ss_pred -------------HHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 127 -------------LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 127 -------------~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
.+..-++. +. +.-|.. .+.| ..+ ..|++|+...||++.-.
T Consensus 115 ~l~T~~~~~~R~~~i~~TL~~--VG-L~Pdha-n~~~-~~l--a~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQ 187 (267)
T COG4167 115 RLNTDLEPEQRRKQIFETLRM--VG-LLPDHA-NYYP-HML--APGQKQRVALARALILRPKIIIADEALASLDMSMRSQ 187 (267)
T ss_pred hhcccCChHHHHHHHHHHHHH--hc-cCcccc-ccch-hhc--CchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHH
Confidence 11110000 00 001111 1111 111 12566666666664321
Q ss_pred HHHHHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 L~~L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.+|.-.| .+.|+..|.++|..-. ++|++|.+|.|+.++.+..|.
T Consensus 188 l~NL~LeLQek~GiSyiYV~QhlG~------------------iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 188 LINLMLELQEKQGISYIYVTQHIGM------------------IKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHhCceEEEEechhhH------------------hhhhcccEEEEecCceeecCC
Confidence 33443333 4579999999985421 899999999999887776654
No 395
>PLN03140 ABC transporter G family member; Provisional
Probab=99.07 E-value=5.5e-10 Score=125.23 Aligned_cols=164 Identities=14% Similarity=0.092 Sum_probs=106.2
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~--~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
|-+++|++++|.||||||||||++.+++.... ..|. +++++.......+.+.+||.+|+..+.+..|+.+.+.+...
T Consensus 901 ~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~-I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~ 979 (1470)
T PLN03140 901 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD-IRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAF 979 (1470)
T ss_pred EEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccce-EEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHH
Confidence 46889999999999999999999999987532 2354 56776544334455678999998877778899888776432
Q ss_pred HHhcCC-------------ceEEEEecccccCC----CCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 131 LIRSGS-------------VDVVVVDSVAALVP----KGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 131 ~~~~~~-------------~~lvviDsl~~l~~----~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+..... .+.+-++....... ...+++ |++++...+++++..
T Consensus 980 lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg--GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~ 1057 (1470)
T PLN03140 980 LRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST--EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1057 (1470)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Confidence 210000 00111111111110 124554 888888888887654
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE-eceeecCc
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR-IGLVKKGE 236 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~-~~~~~~~~ 236 (366)
+.++.+.+.+.|.|||+++|..+. .+...+|.++.|.+ ++.+..|.
T Consensus 1058 v~~~L~~l~~~g~tVI~t~Hq~~~-----------------~i~~~~D~vllL~~gG~~v~~G~ 1104 (1470)
T PLN03140 1058 VMRTVRNTVDTGRTVVCTIHQPSI-----------------DIFEAFDELLLMKRGGQVIYSGP 1104 (1470)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCH-----------------HHHHhCCEEEEEcCCCEEEEECC
Confidence 555555566679999999996542 03456789999986 55555543
No 396
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.07 E-value=1.8e-10 Score=118.35 Aligned_cols=145 Identities=22% Similarity=0.243 Sum_probs=90.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcce-ecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLL-LAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~~~~~ 133 (366)
+.+|++++|.||||||||||++.+++...+..|.+ +++.. ..+||.+|+.. +....++.+.+........
T Consensus 345 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i-~~~~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 415 (552)
T TIGR03719 345 LPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI-KIGET--------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ 415 (552)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE-EECCc--------eEEEEEeCCccccCCCCcHHHHHHhhccccc
Confidence 78999999999999999999999999888877875 44431 15888888753 5555677776654211000
Q ss_pred cC--C------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHhhhcCcEE
Q 017792 134 SG--S------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSLSLSQTIL 188 (366)
Q Consensus 134 ~~--~------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l~~~~~tV 188 (366)
.. . ...+-++....-.+...+++ |++++...||+++.. ...+...+++.+.+|
T Consensus 416 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--Ge~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~v 493 (552)
T TIGR03719 416 LGKREVPSRAYVGRFNFKGSDQQKKVGQLSG--GERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCA 493 (552)
T ss_pred cCcchHHHHHHHHhCCCChhHhcCchhhCCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 00 0 00111110000011234444 888888888887654 344444445545689
Q ss_pred EEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 189 IFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 189 I~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
|+++|.... +..+||+++.|.+
T Consensus 494 iivsHd~~~------------------~~~~~d~i~~l~~ 515 (552)
T TIGR03719 494 VVISHDRWF------------------LDRIATHILAFEG 515 (552)
T ss_pred EEEeCCHHH------------------HHHhCCEEEEEEC
Confidence 999997764 5567888888764
No 397
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.06 E-value=2.6e-10 Score=116.66 Aligned_cols=138 Identities=19% Similarity=0.292 Sum_probs=88.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH--
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV-- 128 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~-- 128 (366)
=+++|+.++|+|++|||||||++.+++.+.+..|. +++++.+..+ ..+++.+++.+|++.+++ .|+.+++...
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~-I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~~ 421 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS-IAVNGVPLADADADSWRDQIAWVPQHPFLFA-GTIAENIRLARP 421 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEehhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccCC
Confidence 37899999999999999999999999999988887 5777664322 467888999999987764 3554443321
Q ss_pred -------HHHHhcCCceEEEEec----ccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 129 -------DTLIRSGSVDVVVVDS----VAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 129 -------~~~~~~~~~~lvviDs----l~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
...++.....- .+++ +..... ...+++ |++|+...||++.+. +.
T Consensus 422 ~~~~~~i~~a~~~~~l~~-~i~~lp~Gldt~v~e~g~~LSg--Gq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~ 498 (529)
T TIGR02857 422 DASDAEIRRALERAGLDE-FVAALPQGLDTLIGEGGAGLSG--GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVT 498 (529)
T ss_pred CCCHHHHHHHHHHcCcHH-HHHhCcccccchhccccccCCH--HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence 11111111110 0111 111111 233444 899999999988764 32
Q ss_pred HHHHHhhhcCcEEEEEecCCcc
Q 017792 176 KLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
+....+. .++|+|+++|..+.
T Consensus 499 ~~l~~~~-~~~t~i~itH~~~~ 519 (529)
T TIGR02857 499 EALRALA-QGRTVLLVTHRLAL 519 (529)
T ss_pred HHHHHhc-CCCEEEEEecCHHH
Confidence 3332222 58999999997643
No 398
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.06 E-value=9.8e-10 Score=106.81 Aligned_cols=117 Identities=21% Similarity=0.314 Sum_probs=78.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCccee-----------cCCC-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLL-----------AQPD- 119 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~-----------~~~~- 119 (366)
+++|+.++|+||+|+||||+++.+...+....| ++-||+.+... ..+++++|++||+-.+ ..+.
T Consensus 561 v~pGktvAlVG~SGaGKSTimRlLfRffdv~sG-sI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~A 639 (790)
T KOG0056|consen 561 VQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSG-SITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSA 639 (790)
T ss_pred ecCCcEEEEECCCCCchhHHHHHHHHHhhccCc-eEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCC
Confidence 689999999999999999999999999888777 58889877654 4678899999985433 3333
Q ss_pred CHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH
Q 017792 120 CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA 173 (366)
Q Consensus 120 ~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~ 173 (366)
+-|++.+.+.. ..-++.-+-+-|..........+.-+.|++|+...||.+.+.
T Consensus 640 sneevyaAAkA-A~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~ 692 (790)
T KOG0056|consen 640 SNEEVYAAAKA-AQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKA 692 (790)
T ss_pred ChHHHHHHHHH-hhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcC
Confidence 33444433322 111112222334444444444444445888888888887664
No 399
>PRK04296 thymidine kinase; Provisional
Probab=99.06 E-value=1.7e-09 Score=95.87 Aligned_cols=138 Identities=19% Similarity=0.238 Sum_probs=91.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC--CCC-CCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA--EHA-LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~--e~~-~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
|.++.++||+|+||||+++.++..+...+..|+++.. +.. ....+..++|+......+ ....+++..+.. ..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~---~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPV---SSDTDIFELIEE--EG 76 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEe---CChHHHHHHHHh--hC
Confidence 7899999999999999999999999888888888843 221 123355666754443222 345566666554 45
Q ss_pred CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCc
Q 017792 135 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGN 214 (366)
Q Consensus 135 ~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~ 214 (366)
.+.++|+||+++.+.. ..+..+...++..|++||++.+..+-.+. .|..+ .
T Consensus 77 ~~~dvviIDEaq~l~~---------------------~~v~~l~~~l~~~g~~vi~tgl~~~~~~~-~f~~~-------~ 127 (190)
T PRK04296 77 EKIDCVLIDEAQFLDK---------------------EQVVQLAEVLDDLGIPVICYGLDTDFRGE-PFEGS-------P 127 (190)
T ss_pred CCCCEEEEEccccCCH---------------------HHHHHHHHHHHHcCCeEEEEecCcccccC-cCchH-------H
Confidence 6789999999965421 11234555556789999999887654221 01111 2
Q ss_pred eeeeeceEEEEEEEe
Q 017792 215 ALKFYASVRLNIKRI 229 (366)
Q Consensus 215 ~l~~~ad~~i~l~~~ 229 (366)
.+..+||.++.|+..
T Consensus 128 ~L~~~aD~V~~l~~v 142 (190)
T PRK04296 128 YLLALADKVTELKAI 142 (190)
T ss_pred HHHHhcCeEEEeeEE
Confidence 367789999888754
No 400
>PTZ00243 ABC transporter; Provisional
Probab=99.05 E-value=5.6e-10 Score=126.36 Aligned_cols=156 Identities=16% Similarity=0.162 Sum_probs=101.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
|++|+.++|+|++|||||||++.+.+.+.+.+|. +++|+.+..+ ..+++.+++++|++.++.. |+.+++..
T Consensus 1333 I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~-I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~~~ 1410 (1560)
T PTZ00243 1333 IAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGE-IRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFLEA 1410 (1560)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCcccCC
Confidence 6799999999999999999999999999988886 6888776543 4678899999999887753 44444321
Q ss_pred ----HHHHHhcCCceEEEEe----cccccCCC--CccCCccchhhHHHHHHHHHHH---------------------HHH
Q 017792 128 ----VDTLIRSGSVDVVVVD----SVAALVPK--GELDGEMGDAHMAMQARLMSQA---------------------LRK 176 (366)
Q Consensus 128 ----~~~~~~~~~~~lvviD----sl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~---------------------L~~ 176 (366)
+...++.-+..- .|. .+...... ..+++ |++|+...||++.+. +.+
T Consensus 1411 sdeeI~~Al~~a~l~~-~I~~lp~Gldt~vge~G~nLSg--GQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~ 1487 (1560)
T PTZ00243 1411 SSAEVWAALELVGLRE-RVASESEGIDSRVLEGGSNYSV--GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQA 1487 (1560)
T ss_pred CHHHHHHHHHHCCChH-HHhhCcccccccccCCcCcCCH--HHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHH
Confidence 111111111110 011 11222212 23444 899999999998851 333
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
..... ..++|||+|+|..+. +. .||+++.|+++.++..|
T Consensus 1488 ~L~~~-~~~~TvI~IAHRl~t------------------i~-~~DrIlVLd~G~VvE~G 1526 (1560)
T PTZ00243 1488 TVMSA-FSAYTVITIAHRLHT------------------VA-QYDKIIVMDHGAVAEMG 1526 (1560)
T ss_pred HHHHH-CCCCEEEEEeccHHH------------------HH-hCCEEEEEECCEEEEEC
Confidence 23221 248999999996643 22 37999999887655443
No 401
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.05 E-value=2.5e-10 Score=117.39 Aligned_cols=145 Identities=23% Similarity=0.256 Sum_probs=90.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcc-eecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL-LLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~-~~~~~~~~e~~l~~~~~~~~ 133 (366)
+.+|++++|+|+||||||||++.+++...+..|.+ +++.. ..+||.+|+. .+....++.+.+........
T Consensus 347 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 417 (556)
T PRK11819 347 LPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI-KIGET--------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK 417 (556)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCc--------eEEEEEeCchhhcCCCCCHHHHHHhhccccc
Confidence 78999999999999999999999999888888875 44421 1589999886 45566677777654221100
Q ss_pred cC--Cce-EEEEeccc---cc--CCCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHhhhcCcEE
Q 017792 134 SG--SVD-VVVVDSVA---AL--VPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSLSLSQTIL 188 (366)
Q Consensus 134 ~~--~~~-lvviDsl~---~l--~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l~~~~~tV 188 (366)
.. ... ...++.+. .. .+...+++ |++++...+|+++.. ...+...+.+...+|
T Consensus 418 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tv 495 (556)
T PRK11819 418 VGNREIPSRAYVGRFNFKGGDQQKKVGVLSG--GERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCA 495 (556)
T ss_pred ccccHHHHHHHHHhCCCChhHhcCchhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeE
Confidence 00 000 00011110 00 01234444 788888888877653 333344444444589
Q ss_pred EEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 189 IFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 189 I~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
|+++|.... +..+||+++.|.+
T Consensus 496 i~vtHd~~~------------------~~~~~d~i~~l~~ 517 (556)
T PRK11819 496 VVISHDRWF------------------LDRIATHILAFEG 517 (556)
T ss_pred EEEECCHHH------------------HHHhCCEEEEEEC
Confidence 999997764 5557888887764
No 402
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.05 E-value=2.2e-10 Score=119.46 Aligned_cols=145 Identities=16% Similarity=0.147 Sum_probs=87.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcce--ecCCCCHHHHHHH----
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLL--LAQPDCGEQALSL---- 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~--~~~~~~~e~~l~~---- 127 (366)
-+.+|++++|+||||||||||++.+++...+..|.+ +++.. ..+||.+|+.. +....++.+.+..
T Consensus 334 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i-~~~~~--------~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~ 404 (638)
T PRK10636 334 NLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI-GLAKG--------IKLGYFAQHQLEFLRADESPLQHLARLAPQ 404 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCC--------EEEEEecCcchhhCCccchHHHHHHHhCch
Confidence 478999999999999999999999999988888874 44321 25677776531 2222233222211
Q ss_pred -----HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHhhhcC
Q 017792 128 -----VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSLSLSQ 185 (366)
Q Consensus 128 -----~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l~~~~ 185 (366)
+..++.... +..-..-.+...+++ |++++...|++++.. ...+...+++++
T Consensus 405 ~~~~~~~~~L~~~~-----l~~~~~~~~~~~LSg--GekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~ 477 (638)
T PRK10636 405 ELEQKLRDYLGGFG-----FQGDKVTEETRRFSG--GEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFE 477 (638)
T ss_pred hhHHHHHHHHHHcC-----CChhHhcCchhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 111111111 110000011234444 777777777776653 444455555556
Q ss_pred cEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 186 TILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 186 ~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
.|||+++|.+.. +..+||+++.|.++.+.
T Consensus 478 gtvi~vSHd~~~------------------~~~~~d~i~~l~~G~i~ 506 (638)
T PRK10636 478 GALVVVSHDRHL------------------LRSTTDDLYLVHDGKVE 506 (638)
T ss_pred CeEEEEeCCHHH------------------HHHhCCEEEEEECCEEE
Confidence 799999998765 55678888888876543
No 403
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.04 E-value=3.9e-10 Score=97.80 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=89.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+|.+|+++++.||+|||||||++.+++...+..|. +-++......+ -..-|+++||..+.+..++-++..+-.++..
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~-i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~dNvafgL~l~G 103 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS-IQLNGRRIEGP--GAERGVVFQNEALLPWLNVIDNVAFGLQLRG 103 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCcCcccce-EEECCEeccCC--CccceeEeccCccchhhHHHHHHHHHHHhcC
Confidence 58899999999999999999988888888887775 55554422211 1234889999888888777777655332210
Q ss_pred c----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH-HHHHhh
Q 017792 134 S----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK-LSHSLS 182 (366)
Q Consensus 134 ~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~-L~~~l~ 182 (366)
- ....+|-+.....-+ --++++ |.+|+...||+++.. +.. |...++
T Consensus 104 i~k~~R~~~a~q~l~~VgL~~~~~~~-i~qLSG--GmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~ 180 (259)
T COG4525 104 IEKAQRREIAHQMLALVGLEGAEHKY-IWQLSG--GMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180 (259)
T ss_pred CCHHHHHHHHHHHHHHhCcccccccc-eEeecc--hHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHH
Confidence 0 001111122222111 234555 888898999987643 222 344456
Q ss_pred hcCcEEEEEecCCcc
Q 017792 183 LSQTILIFINQVRAK 197 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~ 197 (366)
..|..+++|+|..++
T Consensus 181 ~tgk~~lliTH~ieE 195 (259)
T COG4525 181 ETGKQVLLITHDIEE 195 (259)
T ss_pred HhCCeEEEEeccHHH
Confidence 789999999998765
No 404
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.04 E-value=6.7e-10 Score=125.47 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=98.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
|++|+.++|+|++|||||||++.+++.+. .+|. +++|+.+..+ ..+++++++.+|++.++.. |+.+++...
T Consensus 1242 I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~-I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~~~ 1318 (1490)
T TIGR01271 1242 VEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGE-IQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYEQW 1318 (1490)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcE-EEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCcccCC
Confidence 78999999999999999999999999986 5665 7888876543 4678899999999988764 454444211
Q ss_pred -----HHHHhcCCceEE---EEecccccCCC--CccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 -----DTLIRSGSVDVV---VVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 -----~~~~~~~~~~lv---viDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
...++.-...-. .-+.+...... ..+++ |++|+...||++.+. +.+..
T Consensus 1319 tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSg--GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L 1396 (1490)
T TIGR01271 1319 SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSN--GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL 1396 (1490)
T ss_pred CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCH--HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 111111011000 00112222211 23443 899999999988764 33333
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
... ..++|||+|+|..+. +. .+|+++.|+++.++.
T Consensus 1397 ~~~-~~~~TvI~IaHRl~t------------------i~-~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1397 KQS-FSNCTVILSEHRVEA------------------LL-ECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred HHH-cCCCEEEEEecCHHH------------------HH-hCCEEEEEECCEEEE
Confidence 221 248999999996543 33 379999998775443
No 405
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.02 E-value=8.2e-10 Score=124.21 Aligned_cols=150 Identities=15% Similarity=0.198 Sum_probs=96.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--------------------------------------------------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-------------------------------------------------- 84 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-------------------------------------------------- 84 (366)
+++|+.++|+|++|||||||+..+++.+.+
T Consensus 1191 i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1270 (1466)
T PTZ00265 1191 CDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDS 1270 (1466)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999987
Q ss_pred ----cCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---------HHHHhcCCceEEEE----ec
Q 017792 85 ----QGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV---------DTLIRSGSVDVVVV----DS 144 (366)
Q Consensus 85 ----~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~---------~~~~~~~~~~lvvi----Ds 144 (366)
..|. +++|+.+..+ ..+++.+++++|++.++. .|+.+++.+. ....+.-...- +| +.
T Consensus 1271 ~~~~~~G~-I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~~at~eeI~~A~k~A~l~~-fI~~LP~G 1347 (1466)
T PTZ00265 1271 TVFKNSGK-ILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKEDATREDVKRACKFAAIDE-FIESLPNK 1347 (1466)
T ss_pred ccCCCCCe-EEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHH-HHHhCccc
Confidence 3454 7788765433 467888999999987763 2333332221 11111101100 01 11
Q ss_pred ccccCCC--CccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-hcCcEEEEEecCCcccccc
Q 017792 145 VAALVPK--GELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS-LSQTILIFINQVRAKLSTF 201 (366)
Q Consensus 145 l~~l~~~--~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~-~~~~tVI~i~h~~~~~~~~ 201 (366)
+...... ..+++ |++|+..+||++.+. +.+....+. ..+.|+|+|+|..+.
T Consensus 1348 ydT~VGe~G~~LSG--GQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst---- 1421 (1466)
T PTZ00265 1348 YDTNVGPYGKSLSG--GQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS---- 1421 (1466)
T ss_pred cCCccCCCCCcCCH--HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHH----
Confidence 2222221 33454 899999999998765 333333332 258999999997643
Q ss_pred cCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 202 GFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 202 ~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
+. .||.++.|.+
T Consensus 1422 --------------i~-~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1422 --------------IK-RSDKIVVFNN 1433 (1466)
T ss_pred --------------HH-hCCEEEEEeC
Confidence 22 3789988887
No 406
>PRK13409 putative ATPase RIL; Provisional
Probab=99.01 E-value=3.6e-10 Score=116.52 Aligned_cols=136 Identities=19% Similarity=0.190 Sum_probs=77.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE----------EEeCCCCCCH--HHH---hhcccccCcceecCC-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV----------FIDAEHALDP--SLA---ETIGVKTENLLLAQP- 118 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl----------~id~e~~~~~--~~~---~~ig~~~~~~~~~~~- 118 (366)
+++|++++|+||||+|||||++.+++.+.+..|.+. ++++.+.... .+. ..+++.+|.+...+.
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~ 175 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKV 175 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhh
Confidence 568999999999999999999999999888878753 1333322111 111 123444444332221
Q ss_pred --CCHHHHHHHH------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 119 --DCGEQALSLV------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 119 --~~~e~~l~~~------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
.++.+++... ..++.... ++....-. -..+++ |++|+...|++++..
T Consensus 176 ~~~tv~e~l~~~~~~~~~~~~l~~l~-----l~~~~~~~-~~~LSg--Ge~qrv~ia~al~~~p~lllLDEPts~LD~~~ 247 (590)
T PRK13409 176 FKGKVRELLKKVDERGKLDEVVERLG-----LENILDRD-ISELSG--GELQRVAIAAALLRDADFYFFDEPTSYLDIRQ 247 (590)
T ss_pred hcchHHHHHHhhhHHHHHHHHHHHcC-----CchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 2555544321 11111111 11111111 233443 677777777666543
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
+.++.+.+.+ +.+||+++|..+.+.
T Consensus 248 ~~~l~~~i~~l~~-g~tvIivsHd~~~l~ 275 (590)
T PRK13409 248 RLNVARLIRELAE-GKYVLVVEHDLAVLD 275 (590)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHH
Confidence 5555555566 999999999887643
No 407
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.01 E-value=9e-10 Score=91.72 Aligned_cols=140 Identities=19% Similarity=0.247 Sum_probs=83.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~---gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
-|.+|+|+.|.||+|||||||+.-+++.+... .|+ +|++...... +...+++|+.+|+..+++..++-+++.+..
T Consensus 24 Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~-~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl 102 (213)
T COG4136 24 TIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE-LWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL 102 (213)
T ss_pred EecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeE-EEECCeeccccchhhhheeeeecccccccccccccceEEec
Confidence 36799999999999999999988888877654 344 6776554322 455678999999888777666554432210
Q ss_pred H---------HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH-HH
Q 017792 130 T---------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL-SH 179 (366)
Q Consensus 130 ~---------~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L-~~ 179 (366)
. .........+-+|....-.| ..+++ |++.+....|++... +|.+ ..
T Consensus 103 p~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-~tlSG--GQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs 179 (213)
T COG4136 103 PATLKGNARRNAANAALERSGLDGAFHQDP-ATLSG--GQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFS 179 (213)
T ss_pred CcccccHHHHhhHHHHHHHhccchhhhcCh-hhcCc--chHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHH
Confidence 0 00000111222333333332 33443 454444444444332 3332 23
Q ss_pred HhhhcCcEEEEEecCCcc
Q 017792 180 SLSLSQTILIFINQVRAK 197 (366)
Q Consensus 180 ~l~~~~~tVI~i~h~~~~ 197 (366)
.++..|++.|.++|...+
T Consensus 180 ~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 180 EVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred HHHhcCCCeEEEeccccc
Confidence 456789999999998765
No 408
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.01 E-value=7.7e-10 Score=124.12 Aligned_cols=163 Identities=18% Similarity=0.188 Sum_probs=104.6
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh---hcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~---~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
+-+++|++++|.||||||||||++.+++... +..|. +++++... ...+.+.+|+.+|+..+....|+.+.+.+..
T Consensus 784 ~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~-I~i~G~~~-~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a 861 (1394)
T TIGR00956 784 GWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGD-RLVNGRPL-DSSFQRSIGYVQQQDLHLPTSTVRESLRFSA 861 (1394)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeE-EEECCEEC-ChhhhcceeeecccccCCCCCCHHHHHHHHH
Confidence 4689999999999999999999999998775 34465 67777654 2345677999999876677788888877643
Q ss_pred HHHhcCC-------------ceEEEEeccc-ccCC--CCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 130 TLIRSGS-------------VDVVVVDSVA-ALVP--KGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 130 ~~~~~~~-------------~~lvviDsl~-~l~~--~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
.+..... .+.+-++... .... ...+++ |++++...+++++..
T Consensus 862 ~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSg--GqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~ 939 (1394)
T TIGR00956 862 YLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNV--EQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAW 939 (1394)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCH--HHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHH
Confidence 2210000 0000011111 1110 013444 788888888877532
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe-ceeecCc
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI-GLVKKGE 236 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~-~~~~~~~ 236 (366)
+.++.+.+++.|+|||+++|..+.. +...+|+++.|.++ +.+..|.
T Consensus 940 ~i~~~L~~la~~g~tvI~t~H~~~~~-----------------~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 940 SICKLMRKLADHGQAILCTIHQPSAI-----------------LFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCHH-----------------HHHhcCEEEEEcCCCEEEEECC
Confidence 4555555556799999999965420 23457899999876 5555443
No 409
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.00 E-value=2.4e-10 Score=128.18 Aligned_cols=164 Identities=10% Similarity=0.010 Sum_probs=106.9
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh----hcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQ----RQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALS 126 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~----~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~ 126 (366)
|-+.+|++++|.||||||||||++.+++... +..|. +++++....+ ..+.+.+++.+|+..+....|+.+.+.
T Consensus 82 ~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~-I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 82 GLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGV-ITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeE-EEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 5688999999999999999999999998752 34565 5666654321 123345899999887888889998887
Q ss_pred HHHHHHhc------C---CceEEEEecc------cccC-------CCCccCCccchhhHHHHHHHHHHH-----------
Q 017792 127 LVDTLIRS------G---SVDVVVVDSV------AALV-------PKGELDGEMGDAHMAMQARLMSQA----------- 173 (366)
Q Consensus 127 ~~~~~~~~------~---~~~lvviDsl------~~l~-------~~~~l~~~~g~~~~~~~ar~l~~~----------- 173 (366)
+...+... . .....++|.+ .... ....+++ |++++...|+++...
T Consensus 161 f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSG--GerkRvsIA~aL~~~p~vlllDEPTs 238 (1394)
T TIGR00956 161 FAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSG--GERKRVSIAEASLGGAKIQCWDNATR 238 (1394)
T ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCc--ccchHHHHHHHHHhCCCEEEEeCCCC
Confidence 65432100 0 0000011111 1100 0134555 899999999987654
Q ss_pred ---------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 ---------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 ---------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++.+.+.+ .|.|||+++|.... .+..++|.++.|.+++++..|.
T Consensus 239 gLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~-----------------~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 239 GLDSATALEFIRALKTSANILDTTPLVAIYQCSQ-----------------DAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCH-----------------HHHHhhceEEEEeCCeEEEECC
Confidence 4444555544 58999999996421 0556789999999887666554
No 410
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.99 E-value=4e-09 Score=92.92 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=59.2
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce--ecCCCCHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL--LAQPDCGEQALSLV 128 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~--~~~~~~~e~~l~~~ 128 (366)
-|+.|+++.|.|.||+|||||+..+++.+.+.+|. ++|++.+... ..++..++-++|++. .+...|++|++..+
T Consensus 28 ~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~-I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la 106 (263)
T COG1101 28 EIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQ-ILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALA 106 (263)
T ss_pred eecCCceEEEEcCCCccHHHHHHHhhCccccCCce-EEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHH
Confidence 38899999999999999999999999999999997 7888876544 345666677788775 34566778776654
Q ss_pred H
Q 017792 129 D 129 (366)
Q Consensus 129 ~ 129 (366)
.
T Consensus 107 ~ 107 (263)
T COG1101 107 E 107 (263)
T ss_pred H
Confidence 3
No 411
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.98 E-value=5.3e-10 Score=117.02 Aligned_cols=140 Identities=15% Similarity=0.140 Sum_probs=89.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV------ 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~------ 128 (366)
+++|++++|+||||||||||++.+++.+.+.+|. ++++. .+.+++.+|++.+... ++.+.+...
T Consensus 475 i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~-i~~~~--------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~ 544 (659)
T TIGR00954 475 VPSGNHLLICGPNGCGKSSLFRILGELWPVYGGR-LTKPA--------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDM 544 (659)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCe-EeecC--------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhh
Confidence 7799999999999999999999999988777776 44432 3467888888765544 555544321
Q ss_pred ----------HHHHhcCCceEE-----EEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------HHH
Q 017792 129 ----------DTLIRSGSVDVV-----VVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRK 176 (366)
Q Consensus 129 ----------~~~~~~~~~~lv-----viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~ 176 (366)
...++..+..-. -+|..... ...+++ |++|+...||++... -..
T Consensus 545 ~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~--~~~LSg--GqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 545 KRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDW--MDVLSG--GEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hccCCCHHHHHHHHHHcCCHHHHhhcCCccccccc--ccCCCH--HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 111111111000 01111110 134555 899999999988764 334
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
+...+++.++|+|+++|..+. + .+||+++.|.
T Consensus 621 l~~~l~~~~~tvI~isH~~~~------------------~-~~~d~il~l~ 652 (659)
T TIGR00954 621 MYRLCREFGITLFSVSHRKSL------------------W-KYHEYLLYMD 652 (659)
T ss_pred HHHHHHHcCCEEEEEeCchHH------------------H-HhCCEEEEEe
Confidence 444555679999999997643 2 3578888775
No 412
>PLN03073 ABC transporter F family; Provisional
Probab=98.97 E-value=8.7e-10 Score=115.90 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=84.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHH------
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL------ 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~------ 127 (366)
-+++|++++|+||||||||||++.+++.+.+..|.+ +++. ..++||.+|+.......+...++..
T Consensus 531 ~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I-~~~~--------~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~ 601 (718)
T PLN03073 531 GIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV-FRSA--------KVRMAVFSQHHVDGLDLSSNPLLYMMRCFPG 601 (718)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceE-EECC--------ceeEEEEeccccccCCcchhHHHHHHHhcCC
Confidence 377999999999999999999999999988887864 4432 1246666665311100111111111
Q ss_pred -----HHHHHhcCCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHhhhc
Q 017792 128 -----VDTLIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSLSLS 184 (366)
Q Consensus 128 -----~~~~~~~~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l~~~ 184 (366)
+..++.... +. .... .+...+++ |++|+...||++... ...+...+.+.
T Consensus 602 ~~~~~i~~~L~~~g-----l~~~~~~-~~~~~LSg--GqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~ 673 (718)
T PLN03073 602 VPEQKLRAHLGSFG-----VTGNLAL-QPMYTLSG--GQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF 673 (718)
T ss_pred CCHHHHHHHHHHCC-----CChHHhc-CCccccCH--HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 111111111 11 0111 11234444 777777777776643 33444445554
Q ss_pred CcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 185 QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 185 ~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+.|||+++|.... +..+||+++.|.++.+
T Consensus 674 ~gtvIivSHd~~~------------------i~~~~drv~~l~~G~i 702 (718)
T PLN03073 674 QGGVLMVSHDEHL------------------ISGSVDELWVVSEGKV 702 (718)
T ss_pred CCEEEEEECCHHH------------------HHHhCCEEEEEECCEE
Confidence 5699999997764 5567888888876654
No 413
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.7e-09 Score=92.13 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=57.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+.+|+++.|.||||+|||||++.+++.+++..|. +|+.++.... ..+.+.+-|.--+.-+-...|+.|++.+...+.
T Consensus 25 l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~-v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~ 103 (209)
T COG4133 25 LNAGEALQITGPNGAGKTTLLRILAGLLRPDAGE-VYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFH 103 (209)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCe-EEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHh
Confidence 4599999999999999999999999999999998 5666555433 224455545444555566778888887776654
Q ss_pred h
Q 017792 133 R 133 (366)
Q Consensus 133 ~ 133 (366)
.
T Consensus 104 ~ 104 (209)
T COG4133 104 G 104 (209)
T ss_pred C
Confidence 3
No 414
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.96 E-value=1.7e-09 Score=116.49 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=119.1
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
-.+++|++.++.|+|||||||+...+.+...+.+|. +|+.+..... ....+.+||.||...+.+..|..|.+.+.
T Consensus 586 ~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~-a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~ 664 (885)
T KOG0059|consen 586 FAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGE-ALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFY 664 (885)
T ss_pred EEecCCceEEEecCCCCCchhhHHHHhCCccCCcce-EEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHH
Confidence 579999999999999999999999999999998887 6665544322 24678899999998888888888876653
Q ss_pred HHHH--------------------------------------------hcCCceEEEEecccccCCCCccCCccchhhHH
Q 017792 129 DTLI--------------------------------------------RSGSVDVVVVDSVAALVPKGELDGEMGDAHMA 164 (366)
Q Consensus 129 ~~~~--------------------------------------------~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~ 164 (366)
..+. --+.+.++.+|..++-..
T Consensus 665 arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmD-------------- 730 (885)
T KOG0059|consen 665 ARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLD-------------- 730 (885)
T ss_pred HHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCC--------------
Confidence 3211 013467777777554431
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEE
Q 017792 165 MQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIA 244 (366)
Q Consensus 165 ~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~ 244 (366)
..+| +.++.+.+.+++.+..||+|+|.+++ .+++|++.-.|.+++...-|.
T Consensus 731 P~ar---r~lW~ii~~~~k~g~aiiLTSHsMeE------------------~EaLCtR~aImv~G~l~ciGs-------- 781 (885)
T KOG0059|consen 731 PKAR---RHLWDIIARLRKNGKAIILTSHSMEE------------------AEALCTRTAIMVIGQLRCIGS-------- 781 (885)
T ss_pred HHHH---HHHHHHHHHHHhcCCEEEEEcCCHHH------------------HHHHhhhhheeecCeeEEecC--------
Confidence 1233 45777777777877799999998876 677899988888876554442
Q ss_pred EEEEecCCCCCCCeeEEEEEe
Q 017792 245 VKIVKNKLAPPFKTAQFELEF 265 (366)
Q Consensus 245 l~v~K~r~~~~~~~~~~~i~~ 265 (366)
..-.|+|++.- ..+++..
T Consensus 782 ~q~LKsrfG~g---y~l~~~~ 799 (885)
T KOG0059|consen 782 PQELKSRYGSG---YTLTVRI 799 (885)
T ss_pred hHHHHhhcCCc---EEEEEEE
Confidence 22357887754 4555543
No 415
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.96 E-value=5.6e-09 Score=93.88 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=43.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC---CCHHHHhhcccccC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTE 111 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~---~~~~~~~~ig~~~~ 111 (366)
+++|+-..|+||||||||||+..+++...+..+.+..+..... ...++++++|++..
T Consensus 54 V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~ 113 (257)
T COG1119 54 VNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSS 113 (257)
T ss_pred ecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCH
Confidence 7899999999999999999999999988887666555443322 11577888888653
No 416
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.94 E-value=3.4e-09 Score=90.08 Aligned_cols=136 Identities=21% Similarity=0.240 Sum_probs=91.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC-C----------HHHHhhcccccCcceecCCCCH-
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D----------PSLAETIGVKTENLLLAQPDCG- 121 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~-~----------~~~~~~ig~~~~~~~~~~~~~~- 121 (366)
-+..|+++++-||+|+|||||++++.+++.+++|. +++-.+... + ..+.+.+||+.|-+.+.+..+.
T Consensus 33 sV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~-I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aL 111 (235)
T COG4778 33 SVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQ-ILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSAL 111 (235)
T ss_pred EecCccEEEeeCCCCCcHHHHHHHHHhccCCCCce-EEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchH
Confidence 36789999999999999999999999999999887 566544321 1 1345668999887666554332
Q ss_pred --------------HHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------
Q 017792 122 --------------EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------- 173 (366)
Q Consensus 122 --------------e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------- 173 (366)
+........++...+. -..+-.+.| ..+++ |++|+..+||-+.-.
T Consensus 112 dVvaePll~~gv~~~~a~~~a~~Ll~rLnl----perLW~LaP-aTFSG--GEqQRVNIaRgfivd~pILLLDEPTasLD 184 (235)
T COG4778 112 DVVAEPLLARGVPREVARAKAADLLTRLNL----PERLWSLAP-ATFSG--GEQQRVNIARGFIVDYPILLLDEPTASLD 184 (235)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCC----CHHHhcCCC-cccCC--chheehhhhhhhhccCceEEecCCccccc
Confidence 2222333333332222 123334443 55666 788888888865432
Q ss_pred ------HHHHHHHhhhcCcEEEEEecCCcc
Q 017792 174 ------LRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 174 ------L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
...|+...+..|+++|-|=|..+.
T Consensus 185 a~Nr~vVveli~e~Ka~GaAlvGIFHDeev 214 (235)
T COG4778 185 ATNRAVVVELIREAKARGAALVGIFHDEEV 214 (235)
T ss_pred ccchHHHHHHHHHHHhcCceEEEeeccHHH
Confidence 667777778889999999996543
No 417
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.92 E-value=4.4e-09 Score=109.86 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=34.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
-+++|++++|+||||||||||++.+++...+..|.+ +++.
T Consensus 25 ~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I-~~~~ 64 (635)
T PRK11147 25 HIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI-IYEQ 64 (635)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE-EeCC
Confidence 377999999999999999999999999888877764 4443
No 418
>PLN03140 ABC transporter G family member; Provisional
Probab=98.92 E-value=3e-09 Score=119.39 Aligned_cols=164 Identities=16% Similarity=0.177 Sum_probs=106.4
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~---gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
|=+++|++++|.||||||||||++.+++.+.+. .|. +++++....+....+.++|++|+..+....|+.|.+.+..
T Consensus 186 ~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~-I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a 264 (1470)
T PLN03140 186 GIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGE-ITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSA 264 (1470)
T ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeE-EEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHH
Confidence 568999999999999999999999999988765 566 4556543322222456899999887778889999887754
Q ss_pred HHHhcC-------------C-------ceE---------------EEEecccccCC-------------CCccCCccchh
Q 017792 130 TLIRSG-------------S-------VDV---------------VVVDSVAALVP-------------KGELDGEMGDA 161 (366)
Q Consensus 130 ~~~~~~-------------~-------~~l---------------vviDsl~~l~~-------------~~~l~~~~g~~ 161 (366)
.+...+ + .++ .++|.+...+. ...+++ |++
T Consensus 265 ~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSG--Ger 342 (1470)
T PLN03140 265 RCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISG--GQK 342 (1470)
T ss_pred HhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCc--ccc
Confidence 321000 0 000 01121111110 124555 888
Q ss_pred hHHHHHHHHHHH--------------------HHHHHHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeec
Q 017792 162 HMAMQARLMSQA--------------------LRKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYA 220 (366)
Q Consensus 162 ~~~~~ar~l~~~--------------------L~~L~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~a 220 (366)
++...++++... +.++.+.+. ..|.|||+++|.... . +..++
T Consensus 343 kRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~----------~-------i~~lf 405 (1470)
T PLN03140 343 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAP----------E-------TFDLF 405 (1470)
T ss_pred eeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCH----------H-------HHHHh
Confidence 888888776543 344444443 368999999995321 1 45678
Q ss_pred eEEEEEEEeceeecCc
Q 017792 221 SVRLNIKRIGLVKKGE 236 (366)
Q Consensus 221 d~~i~l~~~~~~~~~~ 236 (366)
|.++.|.+++++..|.
T Consensus 406 D~vilL~~G~ivy~G~ 421 (1470)
T PLN03140 406 DDIILLSEGQIVYQGP 421 (1470)
T ss_pred heEEEeeCceEEEeCC
Confidence 9999999887776654
No 419
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.92 E-value=3.1e-09 Score=110.86 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=34.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
-|.+|++++|+||||||||||++.+++...+..|.+ +++.
T Consensus 23 ~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I-~~~~ 62 (638)
T PRK10636 23 TINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY-TFPG 62 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecC
Confidence 377999999999999999999999999888877764 4443
No 420
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.91 E-value=7.2e-09 Score=88.44 Aligned_cols=59 Identities=25% Similarity=0.292 Sum_probs=46.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HH----HHhhcccccCcc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PS----LAETIGVKTENL 113 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~----~~~~ig~~~~~~ 113 (366)
+.+|++.+|+|++|||||||+.++...+.+..|.+.|......+- .+ .....|++.||+
T Consensus 29 l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP 98 (258)
T COG4107 29 LYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNP 98 (258)
T ss_pred ecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCc
Confidence 569999999999999999999999999999999988877554322 11 223468887776
No 421
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=98.90 E-value=1.8e-08 Score=93.48 Aligned_cols=133 Identities=19% Similarity=0.282 Sum_probs=92.4
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----------cCCeEEEEeCCCCCCH------HHHhhcccccCcceec
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQR----------QGGYCVFIDAEHALDP------SLAETIGVKTENLLLA 116 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~----------~gg~vl~id~e~~~~~------~~~~~ig~~~~~~~~~ 116 (366)
+-+..|-...|+|++|+||||+++.++..+.. ..|.|+|++.|...+. ....++|+.+.++.-.
T Consensus 84 ~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~ 163 (402)
T COG3598 84 EFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNM 163 (402)
T ss_pred HHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhhe
Confidence 34457777788899999999999988776542 3478999999987653 2355677776655322
Q ss_pred CC------------CCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhc
Q 017792 117 QP------------DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLS 184 (366)
Q Consensus 117 ~~------------~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~ 184 (366)
+. ... .++......++...++++|||++.+++...+++. .+.+++...+++|.. ..
T Consensus 164 dltd~~Gaa~~~d~l~p-kl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~--------vqv~~fi~~~rkla~---~l 231 (402)
T COG3598 164 DLTDVSGAADESDVLSP-KLYRRFEKILEQKRPDFVVIDPFVAFYEGKSISD--------VQVKEFIKKTRKLAR---NL 231 (402)
T ss_pred eccccccCCCccccccH-HHHHHHHHHHHHhCCCeEEEcchhhhcCCccchh--------HHHHHHHHHHHHHHH---hc
Confidence 21 111 3344444455566799999999999885333322 466777777888774 56
Q ss_pred CcEEEEEecCCcc
Q 017792 185 QTILIFINQVRAK 197 (366)
Q Consensus 185 ~~tVI~i~h~~~~ 197 (366)
+|+||++.|....
T Consensus 232 ~caIiy~hHtsks 244 (402)
T COG3598 232 ECAIIYIHHTSKS 244 (402)
T ss_pred CCeEEEEeccccc
Confidence 9999999997664
No 422
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.89 E-value=2.7e-09 Score=92.61 Aligned_cols=84 Identities=23% Similarity=0.234 Sum_probs=60.5
Q ss_pred ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHH-HhhcccccCcceecC
Q 017792 42 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSL-AETIGVKTENLLLAQ 117 (366)
Q Consensus 42 G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~-~~~ig~~~~~~~~~~ 117 (366)
|+..|+.+-- -+.+|++-.|+||||+|||||+-.+.+...+..|+|+|-+..+... ..+ ..-+|-.+|.+.++.
T Consensus 17 GF~Aln~ls~--~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe 94 (249)
T COG4674 17 GFKALNDLSF--SVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFE 94 (249)
T ss_pred ceeeeeeeEE--EecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehh
Confidence 4445544432 4789999999999999999999999999998888855544233322 223 334677888888888
Q ss_pred CCCHHHHHHH
Q 017792 118 PDCGEQALSL 127 (366)
Q Consensus 118 ~~~~e~~l~~ 127 (366)
..++.++++.
T Consensus 95 ~ltV~eNLel 104 (249)
T COG4674 95 NLTVRENLEL 104 (249)
T ss_pred hccHHHHHHH
Confidence 8888777655
No 423
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.88 E-value=1.3e-08 Score=109.23 Aligned_cols=155 Identities=21% Similarity=0.264 Sum_probs=104.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCC-----------
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPD----------- 119 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~----------- 119 (366)
-+++|+.++|+||+||||||....+-+.+.+..|. +.+|+.+..+ .-+++++|++.|.+.++...
T Consensus 1012 ~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~-V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~ 1090 (1228)
T KOG0055|consen 1012 SIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGK-VKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEE 1090 (1228)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe-EEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCC
Confidence 37899999999999999999998888888888885 8899877654 45688899999988765432
Q ss_pred -CHHHHHHHHHHHHhcCCceEEEEeccc----ccCC--CCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 120 -CGEQALSLVDTLIRSGSVDVVVVDSVA----ALVP--KGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 120 -~~e~~l~~~~~~~~~~~~~lvviDsl~----~l~~--~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+.+++.+.+... ..++ +|.++. .... ...++| |++||..+||++.+.
T Consensus 1091 vs~~eIi~Aak~A-NaH~----FI~sLP~GyDT~vGerG~QLSG--GQKQRIAIARAilRnPkILLLDEATSALDseSEr 1163 (1228)
T KOG0055|consen 1091 VSEEEIIEAAKLA-NAHN----FISSLPQGYDTRVGERGVQLSG--GQKQRIAIARAILRNPKILLLDEATSALDSESER 1163 (1228)
T ss_pred CCHHHHHHHHHHh-hhHH----HHhcCcCcccCccCcccCcCCc--hHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHH
Confidence 333443332211 0000 112221 1121 244555 899999999998764
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.+-...+ ..|.|.|+|.|..+-+. .||.+..++++.++.+|+
T Consensus 1164 vVQeALd~a-~~gRT~IvIAHRLSTIq-------------------naD~I~Vi~~G~VvE~Gt 1207 (1228)
T KOG0055|consen 1164 VVQEALDRA-MEGRTTIVIAHRLSTIQ-------------------NADVIAVLKNGKVVEQGT 1207 (1228)
T ss_pred HHHHHHHHh-hcCCcEEEEecchhhhh-------------------cCCEEEEEECCEEEeccc
Confidence 22222222 25899999999765432 478888999888777764
No 424
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.87 E-value=4.7e-09 Score=100.20 Aligned_cols=154 Identities=19% Similarity=0.298 Sum_probs=97.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCCC---HH----HHhhcccccCcceecC-C-CC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD---PS----LAETIGVKTENLLLAQ-P-DC 120 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~~---~~----~~~~ig~~~~~~~~~~-~-~~ 120 (366)
+.+|+.++|+|++|||||..++.+++++... +|. +.+++++... .. +-.++++.+|++...- | .+
T Consensus 33 i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~-i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~t 111 (534)
T COG4172 33 IEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGS-ILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHT 111 (534)
T ss_pred ecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccce-eEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhH
Confidence 6799999999999999999999999998763 344 5667666543 22 2346889998775432 2 12
Q ss_pred HH-HHHHHH---------------HHHHhcCCceEEEEecccc---cCCCCccCCccchhhHHHHHHHHHHH--------
Q 017792 121 GE-QALSLV---------------DTLIRSGSVDVVVVDSVAA---LVPKGELDGEMGDAHMAMQARLMSQA-------- 173 (366)
Q Consensus 121 ~e-~~l~~~---------------~~~~~~~~~~lvviDsl~~---l~~~~~l~~~~g~~~~~~~ar~l~~~-------- 173 (366)
++ ++.+.+ ..++ +.+-|..... -+ ..+++| |++|+.++|.+++..
T Consensus 112 Ig~Qi~E~l~~Hrg~~~~~Ar~r~lelL-----~~VgI~~p~~rl~~y-PHeLSG--GqRQRVMIAMALan~P~lLIADE 183 (534)
T COG4172 112 IGKQLAEVLRLHRGLSRAAARARALELL-----ELVGIPEPEKRLDAY-PHELSG--GQRQRVMIAMALANEPDLLIADE 183 (534)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHH-----HHcCCCchhhhhhhC-CcccCc--chhhHHHHHHHHcCCCCeEeecC
Confidence 22 222222 1111 1111222111 12 245666 888888888877653
Q ss_pred ------------HHHHHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ------------LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ------------L~~L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..|.+.| ++.|.+++||+|...- +..+||++..|++++++..+
T Consensus 184 PTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i------------------Vr~~ADrV~VM~~G~ivE~~ 240 (534)
T COG4172 184 PTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI------------------VRKFADRVYVMQHGEIVETG 240 (534)
T ss_pred CcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH------------------HHHhhhhEEEEeccEEeecC
Confidence 33333333 4679999999997643 56778888888888776654
No 425
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.87 E-value=5.1e-09 Score=108.39 Aligned_cols=165 Identities=19% Similarity=0.172 Sum_probs=108.6
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh---cCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQR---QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~---~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
|=+.+|++++|.||+|||||||+..+++.... .+| .+.++++....+.+.+..||+.|+-.+....|++|.+.+..
T Consensus 51 g~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G-~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A 129 (613)
T KOG0061|consen 51 GTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSG-EILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSA 129 (613)
T ss_pred EEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceE-EEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHH
Confidence 56889999999999999999999999998864 244 58888877767788888999999998888899988876654
Q ss_pred HHHhcC----CceEEEEeccccc----------C---CCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 130 TLIRSG----SVDVVVVDSVAAL----------V---PKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 130 ~~~~~~----~~~lvviDsl~~l----------~---~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
.+.-.. ..+...||.+... . ....+++ |++.|...|..+...
T Consensus 130 ~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG--GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~ 207 (613)
T KOG0061|consen 130 LLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG--GERKRVSIALELLTDPSILFLDEPTSGLDSFSAL 207 (613)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc--chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHH
Confidence 432111 0011111111110 1 0122333 666666666554432
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
+..+.+.+.+.|+|||++-|..+. .+-+.-|.++.|.+|..+..|..
T Consensus 208 ~vv~~Lk~lA~~grtVi~tIHQPss-----------------~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 208 QVVQLLKRLARSGRTVICTIHQPSS-----------------ELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred HHHHHHHHHHhCCCEEEEEEeCCcH-----------------HHHHHHhHhhhhcCCcEEEecCH
Confidence 333333333449999999996542 15666788888888877777653
No 426
>PLN03073 ABC transporter F family; Provisional
Probab=98.86 E-value=2.8e-09 Score=112.16 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=34.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH---hhcCCeEEEEeCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA---QRQGGYCVFIDAE 95 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~---~~~gg~vl~id~e 95 (366)
|++|+.++|+|+||||||||++.+++.. .+.++.+.|+..+
T Consensus 200 i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 200 LAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQE 243 (718)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEecc
Confidence 7899999999999999999999998743 3556778887654
No 427
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.84 E-value=1.2e-08 Score=94.59 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=85.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHH-hh-------------------cCCeEEEEeCCCCCC------HHH---Hh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEA-QR-------------------QGGYCVFIDAEHALD------PSL---AE 104 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~-~~-------------------~gg~vl~id~e~~~~------~~~---~~ 104 (366)
-||.|.+++|.|++|||||||+..+..-. .. .-..++++|....-. ..+ ..
T Consensus 17 ~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ty~~~~~ 96 (261)
T cd03271 17 DIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPATYTGVFD 96 (261)
T ss_pred eccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHHHHHHHHH
Confidence 47899999999999999999998774211 11 012467777653211 010 00
Q ss_pred --------------------hcccccCcceecCCCCHHHHHHHHHHHHhcC----CceEEEEecccccCCCCccCCccch
Q 017792 105 --------------------TIGVKTENLLLAQPDCGEQALSLVDTLIRSG----SVDVVVVDSVAALVPKGELDGEMGD 160 (366)
Q Consensus 105 --------------------~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~----~~~lvviDsl~~l~~~~~l~~~~g~ 160 (366)
.+.|...++..+...++.+.++++..+-... -...+-++.+..-.+...+++ |+
T Consensus 97 ~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~~LSg--Ge 174 (261)
T cd03271 97 EIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSG--GE 174 (261)
T ss_pred HHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccccCCH--HH
Confidence 1223333343344567777766554321000 001111222110111234444 78
Q ss_pred hhHHHHHHHHHH-----H------------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceee
Q 017792 161 AHMAMQARLMSQ-----A------------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALK 217 (366)
Q Consensus 161 ~~~~~~ar~l~~-----~------------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~ 217 (366)
+|+...++++.. . +..+...+.+.|.|||+++|..+. +.
T Consensus 175 ~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~------------------i~ 236 (261)
T cd03271 175 AQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDV------------------IK 236 (261)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH------------------HH
Confidence 888888888765 1 555555556679999999997653 32
Q ss_pred eeceEEEEEE
Q 017792 218 FYASVRLNIK 227 (366)
Q Consensus 218 ~~ad~~i~l~ 227 (366)
.||.++.|.
T Consensus 237 -~aD~ii~Lg 245 (261)
T cd03271 237 -CADWIIDLG 245 (261)
T ss_pred -hCCEEEEec
Confidence 478888883
No 428
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.84 E-value=2.2e-08 Score=109.76 Aligned_cols=163 Identities=17% Similarity=0.246 Sum_probs=109.4
Q ss_pred HHHhhCCC---CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCC-
Q 017792 46 LDIALGTG---GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP- 118 (366)
Q Consensus 46 LD~~L~~G---Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~- 118 (366)
|+.+|. | =|++|+-++|+|++|||||||++.+-+...+.+|. +.||+-+..+ ..+++++++.||++.++..
T Consensus 1152 lp~VLk-~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~-I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGT 1229 (1381)
T KOG0054|consen 1152 LPLVLK-GISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGE-ILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGT 1229 (1381)
T ss_pred Ccchhc-CceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCe-EEEcCeecccccHHHHHhcCeeeCCCCceecCc
Confidence 455565 2 26799999999999999999999999988887775 8899887665 5788999999998876642
Q ss_pred ----------CCHHHHHHHHHH-----HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH----------
Q 017792 119 ----------DCGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------- 173 (366)
Q Consensus 119 ----------~~~e~~l~~~~~-----~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------- 173 (366)
.+-+++.+.++. .+++...+ +|+ ......-+-+.|++|....||++.+.
T Consensus 1230 vR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~---Ld~---~v~egG~N~SvGQRQLlCLARALLr~skILvLDEAT 1303 (1381)
T KOG0054|consen 1230 VRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGG---LDS---EVSEGGENFSVGQRQLLCLARALLRKSKILVLDEAT 1303 (1381)
T ss_pred cccccCcccccCHHHHHHHHHHhChHHHHhhCCcC---CCc---eecCCCccCChHHHHHHHHHHHHhccCCEEEEeccc
Confidence 233444444332 23221111 222 22222233345888888888888765
Q ss_pred ----------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 ----------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 ----------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.+.++. +=.+||||.|.|....+ .-||+++.|++|++..-+.
T Consensus 1304 AsVD~~TD~lIQ~tIR~-~F~dcTVltIAHRl~TV-------------------md~DrVlVld~G~v~Efds 1356 (1381)
T KOG0054|consen 1304 ASVDPETDALIQKTIRE-EFKDCTVLTIAHRLNTV-------------------MDSDRVLVLDAGRVVEFDS 1356 (1381)
T ss_pred ccCChHHHHHHHHHHHH-HhcCCeEEEEeeccchh-------------------hhcCeEEEeeCCeEeecCC
Confidence 3333322 12599999999976531 1379999999887655544
No 429
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.83 E-value=8.1e-09 Score=92.04 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=38.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC--------eEEEEeCCCCCCHHHHhhcccccCcce
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG--------YCVFIDAEHALDPSLAETIGVKTENLL 114 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg--------~vl~id~e~~~~~~~~~~ig~~~~~~~ 114 (366)
+++| +++|+||||||||||+..++..+.+..+ ..+++.+..........++++.+|+..
T Consensus 20 ~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~ 86 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSD 86 (197)
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCC
Confidence 5578 9999999999999999999877643211 113333332222223466888887654
No 430
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.83 E-value=8.7e-09 Score=116.59 Aligned_cols=146 Identities=17% Similarity=0.195 Sum_probs=91.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHH-----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD----- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~----- 129 (366)
+++|++++|+||+|||||||++.+++.+.+..|. +++++ +++|.+|++.++. .|+.+++.+-.
T Consensus 449 i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~-i~~~g----------~iayv~Q~~~l~~-~Ti~eNI~~g~~~~~~ 516 (1490)
T TIGR01271 449 LEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGK-IKHSG----------RISFSPQTSWIMP-GTIKDNIIFGLSYDEY 516 (1490)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECC----------EEEEEeCCCccCC-ccHHHHHHhccccchH
Confidence 7799999999999999999999999999888886 45554 4788888877655 36666544211
Q ss_pred ---HHHhcCCceEEEEecc----cccCC--CCccCCccchhhHHHHHHHHHHH--------------------HH-HHHH
Q 017792 130 ---TLIRSGSVDVVVVDSV----AALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LR-KLSH 179 (366)
Q Consensus 130 ---~~~~~~~~~lvviDsl----~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~-~L~~ 179 (366)
..+...... -.++.+ ..... ...+++ |++|+...||++... +. .+..
T Consensus 517 ~~~~~~~~~~L~-~~l~~l~~g~~t~vg~~g~~LSg--GqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~ 593 (1490)
T TIGR01271 517 RYTSVIKACQLE-EDIALFPEKDKTVLGEGGITLSG--GQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLC 593 (1490)
T ss_pred HHHHHHHHHhHH-HHHHhccccccccccCcCCCcCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 111000000 000000 00011 123444 889999999987653 22 2222
Q ss_pred HhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 180 SLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 180 ~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.+. .++|||+++|.... +. .||+++.|.++.+...|
T Consensus 594 ~~~-~~~tvilvtH~~~~------------------~~-~ad~ii~l~~g~i~~~g 629 (1490)
T TIGR01271 594 KLM-SNKTRILVTSKLEH------------------LK-KADKILLLHEGVCYFYG 629 (1490)
T ss_pred HHh-cCCeEEEEeCChHH------------------HH-hCCEEEEEECCEEEEEc
Confidence 222 48999999997643 33 37888888876655443
No 431
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.80 E-value=1.8e-09 Score=90.11 Aligned_cols=69 Identities=25% Similarity=0.350 Sum_probs=56.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++...... ..+.+.+++.+++..+....++.+.
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~-i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGS-ILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSHESEEE-EEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred EcCCCEEEEEccCCCccccceeeecccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 6799999999999999999999999988877675 6777665544 4567889999999888777776654
No 432
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.80 E-value=3.1e-08 Score=86.04 Aligned_cols=124 Identities=23% Similarity=0.313 Sum_probs=73.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceE
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDV 139 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~l 139 (366)
++.|.|++|||||+|+.+++.. .+.+++|+.+...++..+.+++.-.-+. .-....+.|...+....+......+.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~H~~~-R~~~w~t~E~~~~l~~~l~~~~~~~~ 76 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARHRKR-RPAHWRTIETPRDLVSALKELDPGDV 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHHHHHh-CCCCceEeecHHHHHHHHHhcCCCCE
Confidence 4789999999999999999765 4678999999988887666554331110 00011122222222222211124678
Q ss_pred EEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEec
Q 017792 140 VVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 193 (366)
Q Consensus 140 vviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h 193 (366)
++||+++.+.. +.+....+. . ...+...+..|...+++.++++|+++.
T Consensus 77 VLIDclt~~~~-n~l~~~~~~--~---~~~~~~~i~~l~~~l~~~~~~~viVsn 124 (169)
T cd00544 77 VLIDCLTLWVT-NLLFADLEE--W---EAAIADEIDALLAAVRNKPGTLILVSN 124 (169)
T ss_pred EEEEcHhHHHH-HhCCCcccc--c---hhHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 99999998873 333221110 0 011234566677777778888888865
No 433
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.79 E-value=1.4e-08 Score=102.76 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=32.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeE
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYC 89 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~v 89 (366)
-+.+|+.++|+|+||+|||||++.+++...+..|.+
T Consensus 25 ~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i 60 (530)
T COG0488 25 TLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60 (530)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeE
Confidence 478999999999999999999999999998877754
No 434
>PLN03130 ABC transporter C family member; Provisional
Probab=98.79 E-value=1.2e-08 Score=116.01 Aligned_cols=147 Identities=15% Similarity=0.189 Sum_probs=90.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-GYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL------ 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g-g~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~------ 127 (366)
+++|++++|+||+|||||||+..+++.+.+.. |.+. + ..+++|.+|++.++.. |+.+++.+
T Consensus 640 i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~-l----------~~~Iayv~Q~p~Lfng-TIreNI~fg~~~d~ 707 (1622)
T PLN03130 640 VPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV-I----------RGTVAYVPQVSWIFNA-TVRDNILFGSPFDP 707 (1622)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE-E----------cCeEEEEcCccccCCC-CHHHHHhCCCcccH
Confidence 78999999999999999999999999999887 7643 2 3468888888776543 44443321
Q ss_pred --HHHHHhcCCc--eE-EEEecccccCCC--CccCCccchhhHHHHHHHHHHH---------------------HHHHHH
Q 017792 128 --VDTLIRSGSV--DV-VVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA---------------------LRKLSH 179 (366)
Q Consensus 128 --~~~~~~~~~~--~l-vviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~---------------------L~~L~~ 179 (366)
..+.++.-.. ++ ..-+........ ..++| |++||...||++.+. +.++..
T Consensus 708 e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSG--GQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~ 785 (1622)
T PLN03130 708 ERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISG--GQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIK 785 (1622)
T ss_pred HHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCH--HHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhh
Confidence 1111111000 00 000111222222 23444 899999999987653 223222
Q ss_pred HhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 180 SLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 180 ~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.+ ..++|+|+++|.... -..||.++.|+++.+...|
T Consensus 786 ~~-l~~kTvIlVTH~l~~-------------------l~~aD~Ii~L~~G~i~e~G 821 (1622)
T PLN03130 786 DE-LRGKTRVLVTNQLHF-------------------LSQVDRIILVHEGMIKEEG 821 (1622)
T ss_pred HH-hcCCEEEEEECCHhH-------------------HHhCCEEEEEeCCEEEEeC
Confidence 11 148999999996542 2247888888877665544
No 435
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.79 E-value=1.5e-08 Score=114.95 Aligned_cols=148 Identities=16% Similarity=0.250 Sum_probs=90.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV------ 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~------ 128 (366)
+++|++++|+||+|||||||++.+++.+.+..|. +++++ +++|.+|++.+. ..|+.+++.+-
T Consensus 661 i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~-i~~~g----------~i~yv~Q~~~l~-~~Ti~eNI~~g~~~~~~ 728 (1522)
T TIGR00957 661 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH-VHMKG----------SVAYVPQQAWIQ-NDSLRENILFGKALNEK 728 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcE-EEECC----------EEEEEcCCcccc-CCcHHHHhhcCCccCHH
Confidence 7899999999999999999999999999888886 45553 578888887654 34555554321
Q ss_pred --HHHHhcCCc--eEEE-EecccccCC--CCccCCccchhhHHHHHHHHHHH---------------------HHHHHHH
Q 017792 129 --DTLIRSGSV--DVVV-VDSVAALVP--KGELDGEMGDAHMAMQARLMSQA---------------------LRKLSHS 180 (366)
Q Consensus 129 --~~~~~~~~~--~lvv-iDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~---------------------L~~L~~~ 180 (366)
.+.+..... ++-. -+....... ...+++ |++|+...||++... +..+...
T Consensus 729 ~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSG--GQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~ 806 (1522)
T TIGR00957 729 YYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSG--GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGP 806 (1522)
T ss_pred HHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhh
Confidence 111100000 0000 000011111 123444 899999999987653 2222211
Q ss_pred h-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 181 L-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 181 l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
. ...++|+|+++|.... +.+ ||+++.|+++.+...|
T Consensus 807 ~~~~~~~tvIlvTH~~~~------------------l~~-~D~ii~l~~G~i~~~g 843 (1522)
T TIGR00957 807 EGVLKNKTRILVTHGISY------------------LPQ-VDVIIVMSGGKISEMG 843 (1522)
T ss_pred hhhhcCCEEEEEeCChhh------------------hhh-CCEEEEecCCeEEeeC
Confidence 0 1247899999996643 333 7888888877655443
No 436
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.78 E-value=3.1e-08 Score=94.35 Aligned_cols=62 Identities=23% Similarity=0.321 Sum_probs=47.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceec
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 116 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~ 116 (366)
-|.+|+++-|+|.|||||||||+.+.+.++|+.|+ +++|++...+ .++++-+..++.+.+++
T Consensus 345 ~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~-I~ldg~pV~~e~ledYR~LfSavFsDyhLF 409 (546)
T COG4615 345 TIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE-ILLDGKPVSAEQLEDYRKLFSAVFSDYHLF 409 (546)
T ss_pred EEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCc-eeECCccCCCCCHHHHHHHHHHHhhhHhhh
Confidence 36799999999999999999999999999999887 6777764433 34555555555554443
No 437
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=4e-08 Score=94.34 Aligned_cols=162 Identities=18% Similarity=0.233 Sum_probs=103.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecC-----------C-
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQ-----------P- 118 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~-----------~- 118 (366)
-+|.|+.+.++|++|+||||+++.+...+..+.|. +.+|+.+..+ ..+.+.+|++||+--++. +
T Consensus 285 ~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~-I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~ 363 (497)
T COG5265 285 TIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS-ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPD 363 (497)
T ss_pred cccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce-EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCcc
Confidence 37899999999999999999999999999988885 7888876654 467788999999765442 2
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHh
Q 017792 119 DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSL 181 (366)
Q Consensus 119 ~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l 181 (366)
.+-++....++.. ..+..-...-|.....+....+.-+.|++|+...||.+.+. =+.+...+
T Consensus 364 at~eev~aaa~~a-qi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l 442 (497)
T COG5265 364 ATAEEVGAAAEAA-QIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAAL 442 (497)
T ss_pred ccHHHHHHHHHHh-hhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHH
Confidence 2344444333321 11111222233344444333443344889999999887764 11111111
Q ss_pred h--hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 182 S--LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 182 ~--~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+ ..|.|-+++.|..+.+- -||.+|.|+++.+...|.
T Consensus 443 ~~~~~~rttlviahrlsti~-------------------~adeiivl~~g~i~erg~ 480 (497)
T COG5265 443 REVSAGRTTLVIAHRLSTII-------------------DADEIIVLDNGRIVERGT 480 (497)
T ss_pred HHHhCCCeEEEEeehhhhcc-------------------CCceEEEeeCCEEEecCc
Confidence 1 25888888889665321 268888888887666553
No 438
>PF13479 AAA_24: AAA domain
Probab=98.77 E-value=3.7e-08 Score=88.91 Aligned_cols=153 Identities=23% Similarity=0.208 Sum_probs=89.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHH-HHhhcccccCcceecCCCCHHHHHHHHHHHHh-cC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS-LAETIGVKTENLLLAQPDCGEQALSLVDTLIR-SG 135 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~-~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~-~~ 135 (366)
+-.++|+|+||+|||||+..+ +.++|+++|...... ... +....+..+.+++++.+..+.. ..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~~~~~~-------~~~~i~i~s~~~~~~~~~~l~~~~~ 67 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDSLKFLD-------DGDVIPITSWEDFLEALDELEEDEA 67 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccchhhhc-------CCCeeCcCCHHHHHHHHHHHHhccC
Confidence 346899999999999998887 457999999874421 111 1122233377788777665432 45
Q ss_pred CceEEEEecccccCC--CCccC----------CccchhhHHHHHHHHHHHHHHHHHH-hhhcCcEEEEEecCCcccc-cc
Q 017792 136 SVDVVVVDSVAALVP--KGELD----------GEMGDAHMAMQARLMSQALRKLSHS-LSLSQTILIFINQVRAKLS-TF 201 (366)
Q Consensus 136 ~~~lvviDsl~~l~~--~~~l~----------~~~g~~~~~~~ar~l~~~L~~L~~~-l~~~~~tVI~i~h~~~~~~-~~ 201 (366)
..+.|||||++.+.. ...+. +.++..+. ...+...+.++... ++..++.||+|.|...+-. ..
T Consensus 68 ~y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---yg~~~~~~~~~i~~l~~~~~~~VI~tah~~~~~~~~~ 144 (213)
T PF13479_consen 68 DYDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKG---YGELQQEFMRFIDKLLNALGKNVIFTAHAKEEEDEDG 144 (213)
T ss_pred CCCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccch---HHHHHHHHHHHHHHHHHHCCCcEEEEEEEEEEEcCCC
Confidence 789999999986531 00000 11111111 12233444455443 3458999999999876644 11
Q ss_pred c---CCCCeeeccCCceeeeeceEEEEEEE
Q 017792 202 G---FGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 202 ~---~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
+ ...|.....-.+.+...+|.+..+..
T Consensus 145 ~~~~~~~~~l~~k~~~~l~~~~D~V~~l~~ 174 (213)
T PF13479_consen 145 GKYTRYKPKLGKKVRNELPGWFDVVGRLRV 174 (213)
T ss_pred CceeEEeeccChhHHhhhhecccEEEEEEE
Confidence 1 11111111123557888999977763
No 439
>PLN03232 ABC transporter C family member; Provisional
Probab=98.76 E-value=1.1e-08 Score=115.92 Aligned_cols=148 Identities=14% Similarity=0.154 Sum_probs=89.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHH-------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL------- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~------- 127 (366)
+++|+.++|+|++|||||||+..+++.+.+..|.++.+ ...++|.+|++.++.. |+.+++.+
T Consensus 640 i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~----------~~~Iayv~Q~p~Lf~g-TIreNI~fg~~~~~e 708 (1495)
T PLN03232 640 IPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVI----------RGSVAYVPQVSWIFNA-TVRENILFGSDFESE 708 (1495)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEe----------cCcEEEEcCccccccc-cHHHHhhcCCccCHH
Confidence 78999999999999999999999999998876654432 3467888887766543 44443321
Q ss_pred -HHHHHhcCCc--eE-EEEecccccCCC--CccCCccchhhHHHHHHHHHHH---------------------HHHHHHH
Q 017792 128 -VDTLIRSGSV--DV-VVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA---------------------LRKLSHS 180 (366)
Q Consensus 128 -~~~~~~~~~~--~l-vviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~---------------------L~~L~~~ 180 (366)
..+.++.-.. ++ ..-+........ ..++| |++||...||++.+. +.++...
T Consensus 709 ~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSG--GQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~ 786 (1495)
T PLN03232 709 RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISG--GQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKD 786 (1495)
T ss_pred HHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCH--HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhh
Confidence 1111110000 00 000111122222 22444 899999999987653 2332222
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+ ..++|+|+++|..+. -..||.++.|+++.+...|
T Consensus 787 ~-l~~kT~IlvTH~~~~-------------------l~~aD~Ii~L~~G~i~~~G 821 (1495)
T PLN03232 787 E-LKGKTRVLVTNQLHF-------------------LPLMDRIILVSEGMIKEEG 821 (1495)
T ss_pred h-hcCCEEEEEECChhh-------------------HHhCCEEEEEeCCEEEEec
Confidence 1 257999999996532 2247888888877665544
No 440
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.72 E-value=8.1e-08 Score=95.22 Aligned_cols=110 Identities=20% Similarity=0.229 Sum_probs=70.4
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH-H----------HHh
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-S----------LAE 104 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~-~----------~~~ 104 (366)
.+.+.||+..+|.++. +.+|+.++|+|++|+|||||+.++++...+..+ ++.+.++...+- . +.+
T Consensus 139 ~~~l~tg~~vid~l~~---i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~g-vI~~~Gerg~ev~e~~~~~l~~~~l~r 214 (438)
T PRK07721 139 REPMEVGVRAIDSLLT---VGKGQRVGIFAGSGVGKSTLMGMIARNTSADLN-VIALIGERGREVREFIERDLGPEGLKR 214 (438)
T ss_pred ccccccchhhhheeee---ecCCcEEEEECCCCCCHHHHHHHHhcccCCCeE-EEEEEecCCccHHHHHHhhcChhhhcC
Confidence 3468999999999987 999999999999999999999888887766554 455655544321 1 112
Q ss_pred hccccc--CcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 105 TIGVKT--ENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 105 ~ig~~~--~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
.+.+.. ++....+.....-.+..++.+...+.--++++||++.+.
T Consensus 215 ~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A 261 (438)
T PRK07721 215 SIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVA 261 (438)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHH
Confidence 222221 111111111223334445555556677788999997654
No 441
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.71 E-value=3.6e-08 Score=95.52 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=92.8
Q ss_pred cCChHHHHHhhC-------CCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCe-----EE----EEeCCCC--CCHH
Q 017792 40 STGSFALDIALG-------TGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY-----CV----FIDAEHA--LDPS 101 (366)
Q Consensus 40 ~TG~~~LD~~L~-------~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~-----vl----~id~e~~--~~~~ 101 (366)
--.+++|...+| .|.|..|++++++||||.|||||++.+++.+.+..|. +- ||..+.. ....
T Consensus 342 lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~ 421 (591)
T COG1245 342 LVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDL 421 (591)
T ss_pred eeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHH
Confidence 345566666555 4789999999999999999999999999999887552 11 2222211 1111
Q ss_pred HHhhcc--cc--cCcceecCCCCHHHHHHH-------------HHHHHhcCCceEEEEecccccCCCCccCCccchhhHH
Q 017792 102 LAETIG--VK--TENLLLAQPDCGEQALSL-------------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMA 164 (366)
Q Consensus 102 ~~~~ig--~~--~~~~~~~~~~~~e~~l~~-------------~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~ 164 (366)
+..... +. .=...+..|...+.+++. +....-....++.++|..++.+. ..|+.
T Consensus 422 l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LD---------vEqR~ 492 (591)
T COG1245 422 LRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLD---------VEQRI 492 (591)
T ss_pred HHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhcc---------HHHHH
Confidence 111111 11 111223445555544332 11222244678889999888772 12222
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 165 MQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 165 ~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
..++.+++++ ...+.|.+++.|..-- +.+++|+++.+.
T Consensus 493 ----~vakvIRR~~---e~~~kta~vVdHDi~~------------------~dyvsDr~ivF~ 530 (591)
T COG1245 493 ----IVAKVIRRFI---ENNEKTALVVDHDIYM------------------IDYVSDRLIVFE 530 (591)
T ss_pred ----HHHHHHHHHH---hhcCceEEEEecceeh------------------hhhhhceEEEEe
Confidence 2344666666 4578999999996532 677888887765
No 442
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.69 E-value=2.7e-08 Score=90.63 Aligned_cols=22 Identities=41% Similarity=0.765 Sum_probs=20.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLAL 76 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~ 76 (366)
+++|++++|+|+||||||||+.
T Consensus 18 i~~Ge~~~l~G~sGsGKSTL~~ 39 (226)
T cd03270 18 IPRNKLVVITGVSGSGKSSLAF 39 (226)
T ss_pred cCCCcEEEEEcCCCCCHHHHHH
Confidence 6799999999999999999963
No 443
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.68 E-value=6.7e-08 Score=88.77 Aligned_cols=148 Identities=19% Similarity=0.231 Sum_probs=81.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHh---------------hc-CC--------eEEEEeCCCC-CC-----HHHHhhcc
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQ---------------RQ-GG--------YCVFIDAEHA-LD-----PSLAETIG 107 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~---------------~~-gg--------~vl~id~e~~-~~-----~~~~~~ig 107 (366)
|++++|+||||||||||+.+++..+. .. .+ .++| +..+. +. ....+.++
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~-~~~~~~~~~~~~~~~i~r~ig 101 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIF-DNSDNRFPIDKEEVRLRRTIG 101 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEE-EcCCCccCCCCCEEEEEEEEE
Confidence 57999999999999999999974421 11 12 3333 33211 11 12345578
Q ss_pred cccCcceecC-CCCHHHHHHHHHHHHhcC-Cce-EEE---EecccccC-----CCCccCCccchhhHHHHHHHHHH----
Q 017792 108 VKTENLLLAQ-PDCGEQALSLVDTLIRSG-SVD-VVV---VDSVAALV-----PKGELDGEMGDAHMAMQARLMSQ---- 172 (366)
Q Consensus 108 ~~~~~~~~~~-~~~~e~~l~~~~~~~~~~-~~~-lvv---iDsl~~l~-----~~~~l~~~~g~~~~~~~ar~l~~---- 172 (366)
+.++++.+.. ..+.+++...+..+--.. ... .+- +..+..+. +...+++ |++++...|++++.
T Consensus 102 ~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~--G~~~r~~la~~l~~~~~~ 179 (243)
T cd03272 102 LKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSG--GQKSLVALALIFAIQKCD 179 (243)
T ss_pred CCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCH--HHHHHHHHHHHHHHhccC
Confidence 8888777765 346677766665431110 000 110 11111111 1123333 78888888888852
Q ss_pred -H-------------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 173 -A-------------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 173 -~-------------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
. +..+...+.+ +++||+++|... +..+||.++.|.-
T Consensus 180 ~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~-------------------~~~~~d~i~~l~~ 235 (243)
T cd03272 180 PAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPE-------------------LLEVADKFYGVKF 235 (243)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-------------------HHhhCCEEEEEEE
Confidence 1 3444444433 788998888642 3346788777753
No 444
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.68 E-value=3.4e-07 Score=75.04 Aligned_cols=92 Identities=33% Similarity=0.420 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGS 136 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~ 136 (366)
.+..+.|+||+|+||||++..++..+......+++++.+........... ...................+........
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 36789999999999999999999988766546899988766543222211 0000001112233333334444444445
Q ss_pred ceEEEEecccccCC
Q 017792 137 VDVVVVDSVAALVP 150 (366)
Q Consensus 137 ~~lvviDsl~~l~~ 150 (366)
+.++++|++..+..
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 79999999998873
No 445
>PTZ00243 ABC transporter; Provisional
Probab=98.68 E-value=3.4e-08 Score=112.11 Aligned_cols=147 Identities=14% Similarity=0.217 Sum_probs=89.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHH-----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD----- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~----- 129 (366)
+++|++++|+||||||||||++.+++.+.+..|.+ ++. .+++|.+|++.++ ..|+.+++.+..
T Consensus 683 i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i-~~~----------~~i~yv~Q~~~l~-~~Tv~enI~~~~~~~~~ 750 (1560)
T PTZ00243 683 VPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-WAE----------RSIAYVPQQAWIM-NATVRGNILFFDEEDAA 750 (1560)
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EEC----------CeEEEEeCCCccC-CCcHHHHHHcCChhhHH
Confidence 78999999999999999999999999988887874 332 4688888887664 346655543211
Q ss_pred ---HHHhcCCc--eE-EEEecccccCC--CCccCCccchhhHHHHHHHHHHH---------------------HHHHHHH
Q 017792 130 ---TLIRSGSV--DV-VVVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA---------------------LRKLSHS 180 (366)
Q Consensus 130 ---~~~~~~~~--~l-vviDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~---------------------L~~L~~~ 180 (366)
..+..... ++ .+-+.+..... ...+++ |++|+...||++... +..+...
T Consensus 751 ~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSG--GQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~ 828 (1560)
T PTZ00243 751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSG--GQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG 828 (1560)
T ss_pred HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 11110000 00 00001111111 233444 889999999887653 2222211
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+.|+|+++|.... + ..||+++.|+++.+...|
T Consensus 829 -~~~~~TvIlvTH~~~~------------------~-~~ad~ii~l~~G~i~~~G 863 (1560)
T PTZ00243 829 -ALAGKTRVLATHQVHV------------------V-PRADYVVALGDGRVEFSG 863 (1560)
T ss_pred -hhCCCEEEEEeCCHHH------------------H-HhCCEEEEEECCEEEEec
Confidence 1248999999996653 2 247888888877655443
No 446
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.63 E-value=4.2e-08 Score=99.36 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=31.0
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG 87 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg 87 (366)
-.+.+|+.++|+||||+|||||++.+++...+..|
T Consensus 343 ~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G 377 (530)
T COG0488 343 FRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG 377 (530)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCc
Confidence 36889999999999999999999999888876644
No 447
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.61 E-value=1.2e-07 Score=103.95 Aligned_cols=150 Identities=16% Similarity=0.223 Sum_probs=91.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCccee-----------cCCCCHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLL-----------AQPDCGEQ 123 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~-----------~~~~~~e~ 123 (366)
+++|++++|+|+.|||||+|+..+++++.+..|. +.+++. ++|.+|.+.+ -.+..-+-
T Consensus 544 i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~-v~v~gs----------iaYv~Q~pWI~ngTvreNILFG~~~d~~r 612 (1381)
T KOG0054|consen 544 IKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGS-VAVNGS----------VAYVPQQPWIQNGTVRENILFGSPYDEER 612 (1381)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCcccccce-EEEcCe----------EEEeccccHhhCCcHHHhhhcCccccHHH
Confidence 7899999999999999999999999999988775 445442 5566554443 33333333
Q ss_pred HHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH---------------------HHHHHHHhh
Q 017792 124 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------------LRKLSHSLS 182 (366)
Q Consensus 124 ~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------------L~~L~~~l~ 182 (366)
.-..+....-..+..++- +.=........++-+.|++||...||++-+. +.+.... -
T Consensus 613 Y~~Vi~aC~L~~Dle~Lp-~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~-~ 690 (1381)
T KOG0054|consen 613 YDKVIKACALKKDLEILP-FGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRG-L 690 (1381)
T ss_pred HHHHHHHccCHhHHhhcC-CCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHh-h
Confidence 323333221111111110 1111122233344344899999999987654 3333311 1
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
-.+.|+|++||... .-..||.++.|++|++...|+
T Consensus 691 L~~KT~ILVTHql~-------------------~L~~ad~Iivl~~G~I~~~Gt 725 (1381)
T KOG0054|consen 691 LRGKTVILVTHQLQ-------------------FLPHADQIIVLKDGKIVESGT 725 (1381)
T ss_pred hcCCEEEEEeCchh-------------------hhhhCCEEEEecCCeEecccC
Confidence 25799999999543 233579999999887766653
No 448
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.60 E-value=1.7e-07 Score=81.53 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=72.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccc----cCcceec-CCCCHHHHHHHHHHHHh
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVK----TENLLLA-QPDCGEQALSLVDTLIR 133 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~----~~~~~~~-~~~~~e~~l~~~~~~~~ 133 (366)
.++.|.|++||||||++..++..+ +..++|+.+....+..+.+++..- ++..... .|....+ .+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~---~i~~~~- 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---GLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAE---LLRADA- 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHH---HHHhhc-
Confidence 578999999999999999997654 446789998777776655554321 1222111 1222222 222211
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecC
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 194 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~ 194 (366)
.+..+++||+++.+.. ..+..+ + ...+...+..+...+++.++|+|+|+..
T Consensus 75 -~~~~~VlID~Lt~~~~-n~l~~~--~------~~~~~~~l~~li~~L~~~~~tvVlVs~E 125 (170)
T PRK05800 75 -APGRCVLVDCLTTWVT-NLLFEE--G------EEAIAAEIDALLAALQQLPAKIILVTNE 125 (170)
T ss_pred -CCCCEEEehhHHHHHH-HHhccc--c------hHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 2356899999999862 222110 0 0112235666777777789888888763
No 449
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.57 E-value=3.6e-07 Score=85.16 Aligned_cols=124 Identities=19% Similarity=0.103 Sum_probs=74.5
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C--HHHHhhcccccCcceecCCC
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D--PSLAETIGVKTENLLLAQPD 119 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~--~~~~~~ig~~~~~~~~~~~~ 119 (366)
..|+.++..|-+ .-++|+||||||||||++.+++.+.+..|. +++++.... + ..++..+++.+|+.... ..
T Consensus 100 ~~l~~l~~~~~~---~~~~i~g~~g~GKttl~~~l~~~~~~~~G~-i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~-r~ 174 (270)
T TIGR02858 100 KLLPYLVRNNRV---LNTLIISPPQCGKTTLLRDLARILSTGISQ-LGLRGKKVGIVDERSEIAGCVNGVPQHDVGI-RT 174 (270)
T ss_pred HHHHHHHhCCCe---eEEEEEcCCCCCHHHHHHHHhCccCCCCce-EEECCEEeecchhHHHHHHHhcccccccccc-cc
Confidence 345566641222 568999999999999999999999887776 566655432 1 34555566666654322 21
Q ss_pred CHHHH---HHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCc
Q 017792 120 CGEQA---LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 196 (366)
Q Consensus 120 ~~e~~---l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~ 196 (366)
++.+. ..-+..++....++++++|.+... . .+..+...+. .|++||+++|...
T Consensus 175 ~v~~~~~k~~~~~~~i~~~~P~villDE~~~~--------------------e---~~~~l~~~~~-~G~~vI~ttH~~~ 230 (270)
T TIGR02858 175 DVLDGCPKAEGMMMLIRSMSPDVIVVDEIGRE--------------------E---DVEALLEALH-AGVSIIATAHGRD 230 (270)
T ss_pred cccccchHHHHHHHHHHhCCCCEEEEeCCCcH--------------------H---HHHHHHHHHh-CCCEEEEEechhH
Confidence 11110 112334455568999999995311 0 1222222222 5999999999643
No 450
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.57 E-value=5.7e-07 Score=80.26 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=25.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
+..|+++.|.||||+|||||++++++...
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 34579999999999999999999987663
No 451
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.55 E-value=7.1e-07 Score=79.79 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|++++|+||||+|||||+++++...
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHH
Confidence 45999999999999999999998544
No 452
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.54 E-value=5.2e-07 Score=74.31 Aligned_cols=113 Identities=20% Similarity=0.329 Sum_probs=74.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCCC-H----HHHhhcccccCcceecCCCCHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD-P----SLAETIGVKTENLLLAQPDCGEQALS 126 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~~-~----~~~~~ig~~~~~~~~~~~~~~e~~l~ 126 (366)
.+.++.|+|++|+|||+++.+++..+... ...++|++...... . .+...++..... ..+..++..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----RQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----cCCHHHHHH
Confidence 56789999999999999999999988754 56678887654433 1 334445544332 557788888
Q ss_pred HHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecC
Q 017792 127 LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 194 (366)
Q Consensus 127 ~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~ 194 (366)
.+...+......+++||.+..+. + +.+...|+.+ +...+++||++.+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~-----~------------~~~l~~l~~l---~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLF-----S------------DEFLEFLRSL---LNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHH-----T------------HHHHHHHHHH---TCSCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcC-----C------------HHHHHHHHHH---HhCCCCeEEEEECh
Confidence 88887777777899999998763 0 1222334333 35789999999875
No 453
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=98.54 E-value=1.4e-06 Score=83.35 Aligned_cols=169 Identities=16% Similarity=0.206 Sum_probs=101.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHH----hhccccc-------Ccce--------e
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLA----ETIGVKT-------ENLL--------L 115 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~----~~ig~~~-------~~~~--------~ 115 (366)
...|+..+|-|.||+|||||++.++..+... +.++|+++.-..+..+. .+-.+++ |+.+ .
T Consensus 7 ~~~G~TLLIKG~PGTGKTtfaLelL~~l~~~-~~v~YISTRVd~d~vy~~y~~~~~~i~~~~vlDatQd~~~~~~~~~vp 85 (484)
T PF07088_consen 7 QEPGQTLLIKGEPGTGKTTFALELLNSLKDH-GNVMYISTRVDQDTVYEMYPWIEESIDPTNVLDATQDPFELPLDKDVP 85 (484)
T ss_pred CCCCcEEEEecCCCCCceeeehhhHHHHhcc-CCeEEEEeccCHHHHHHhhhhhccccChhhhhhhccchhhccccccCc
Confidence 3579999999999999999999999988754 45799998744332111 1111111 1111 1
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCC
Q 017792 116 AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVR 195 (366)
Q Consensus 116 ~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~ 195 (366)
......+.+.+++.+.-.....-++++||..++.. .+..+.+..+ .+-.....|...+++.|+-+|+++...
T Consensus 86 ~~~l~~ds~~~f~~~i~~~~k~~iI~~DSWdaiie--yla~~~~~~e------d~e~l~~dLv~lard~g~~LIlVsEsa 157 (484)
T PF07088_consen 86 FERLDIDSFRDFVDKINEAGKKPIIAFDSWDAIIE--YLAEEHDEPE------DIETLTNDLVELARDMGINLILVSESA 157 (484)
T ss_pred ccccCHHHHHHHHHHhhhcccCcEEEEecHHHHHH--HhhhhhcCcH------HHHHHHHHHHHHHhhcCceEEEEEecC
Confidence 12234566666666543346778999999554431 1111111111 123445566666688899999998865
Q ss_pred cccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCC
Q 017792 196 AKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLA 253 (366)
Q Consensus 196 ~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~ 253 (366)
+. .| ++|++|-|+-|+-. ..++ -..++.+.+.|.|.-
T Consensus 158 ~~-------~~---------LdYivDGVVTL~v~----~der-GR~~R~L~LeKLRGV 194 (484)
T PF07088_consen 158 EN-------EP---------LDYIVDGVVTLQVK----NDER-GRTRRYLRLEKLRGV 194 (484)
T ss_pred CC-------Cc---------chheeeeEEEEEec----cccC-CceEEEEEehhhcCc
Confidence 43 12 99999999999422 1111 112347788888743
No 454
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.52 E-value=1.1e-08 Score=87.30 Aligned_cols=160 Identities=22% Similarity=0.266 Sum_probs=85.8
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCc------------ceecC
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTEN------------LLLAQ 117 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~------------~~~~~ 117 (366)
|-+..|+++-++||||+|||||+-.+++... ..|. +-+++..... .++++.-.|..|+ +.+.+
T Consensus 20 ~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGs-i~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~q 97 (248)
T COG4138 20 GEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGS-IQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQ 97 (248)
T ss_pred cccccceEEEEECCCCccHHHHHHHHhCCCC-CCce-EEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcC
Confidence 6788999999999999999999887777654 3454 4445433211 3455555554432 22333
Q ss_pred CC-CHHHHHHHHHHH-------------HhcCCceEEEEeccc-ccC----CCC--ccCCccchhhHHHHHHHHHHHHHH
Q 017792 118 PD-CGEQALSLVDTL-------------IRSGSVDVVVVDSVA-ALV----PKG--ELDGEMGDAHMAMQARLMSQALRK 176 (366)
Q Consensus 118 ~~-~~e~~l~~~~~~-------------~~~~~~~lvviDsl~-~l~----~~~--~l~~~~g~~~~~~~ar~l~~~L~~ 176 (366)
|. ++...++.+..+ ++.+.-+.|-+..+. ... |.. -+-+++-......+. ..|.+
T Consensus 98 P~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~----~aLdr 173 (248)
T COG4138 98 PDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQ----SALDR 173 (248)
T ss_pred chHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHH----HHHHH
Confidence 33 222333333221 122222222222211 111 111 111222222222222 24666
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+...+...|.+||+.+|.... --.-+|.+..++++.++..|.
T Consensus 174 ll~~~c~~G~~vims~HDLNh------------------TLrhA~~~wLL~rG~l~~~G~ 215 (248)
T COG4138 174 LLSALCQQGLAIVMSSHDLNH------------------TLRHAHRAWLLKRGKLLASGR 215 (248)
T ss_pred HHHHHHhCCcEEEEeccchhh------------------HHHHHHHHHHHhcCeEEeecc
Confidence 777777889999999997643 112467777888887777664
No 455
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.50 E-value=5.7e-07 Score=80.30 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.9
Q ss_pred CC-CEEEEEcCCCCcHHHHHHHHH
Q 017792 57 KG-RVVEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 57 ~G-~ii~I~G~~GsGKTTL~~~l~ 79 (366)
+| +++.|.||||+|||||++.+.
T Consensus 26 ~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 26 ENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred CCceEEEEECCCCCChHHHHHHHH
Confidence 45 589999999999999999988
No 456
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.49 E-value=1.7e-07 Score=84.52 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
..|++++|+|+||||||||+..++.
T Consensus 26 ~~~~~~~i~G~NGsGKSTll~~i~~ 50 (213)
T cd03279 26 DNNGLFLICGPTGAGKSTILDAITY 50 (213)
T ss_pred CccCEEEEECCCCCCHHHHHHHhee
Confidence 4588999999999999999998874
No 457
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.45 E-value=3.2e-06 Score=76.31 Aligned_cols=128 Identities=14% Similarity=0.109 Sum_probs=72.3
Q ss_pred CcCC-CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhccc-ccCcceecCCCCHHHHHHHHHHH
Q 017792 54 GLPK-GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGV-KTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 54 Gi~~-G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~-~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
-+++ ...+.|+|+||+||||+++.+. +..++++.+...... .|. ..+-..+-.+.+.+.+.+++..+
T Consensus 7 ~~~~~~~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~~~~l----~g~~~~~v~~~d~~~~~~~~~d~l~~~ 75 (220)
T TIGR01618 7 NIKRIPNMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMSSKVL----IGDENVDIADHDDMPPIQAMVEFYVMQ 75 (220)
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHhcC-------CCCEEEeccccchhc----cCCCCCceeecCCCCCHHHHHHHHHHH
Confidence 3444 4679999999999999988772 345777776543211 111 00111122344566666666533
Q ss_pred H-hcCCceEEEEecccccCC-------CCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCc
Q 017792 132 I-RSGSVDVVVVDSVAALVP-------KGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 196 (366)
Q Consensus 132 ~-~~~~~~lvviDsl~~l~~-------~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~ 196 (366)
- ....++.||||++..+.. +..-++.+ +.+... .+...+..+...+...|.+||++.|...
T Consensus 76 ~~~~~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~-~~~~yg---~~~~~fl~~l~~L~~~g~nII~tAhe~~ 144 (220)
T TIGR01618 76 NIQAVKYDNIVIDNISALQNLWLENIGRAAKNGQP-ELQHYQ---KLDLWFLDLLTVLKESNKNIYATAWELT 144 (220)
T ss_pred HhccccCCEEEEecHHHHHHHHHHHHhhhcCCCCc-ccccHH---HHHHHHHHHHHHHHhCCCcEEEEEeecc
Confidence 2 134589999999987752 01111111 111111 1223444455555668999999999854
No 458
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.36 E-value=7.6e-07 Score=79.80 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+| +++|+||||+|||||+..+...+
T Consensus 22 ~g-~~~i~G~NGsGKTTLl~ai~~~l 46 (204)
T cd03240 22 SP-LTLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 44 99999999999999998886433
No 459
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.36 E-value=5.2e-06 Score=71.56 Aligned_cols=121 Identities=15% Similarity=0.095 Sum_probs=62.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc--
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS-- 134 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~-- 134 (366)
.+.+++|+||||+||||++..+...+....+....-+........-+..+-+.+....+. ....+.+.+...+...
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS--~G~~~~~~la~~L~~~~~ 97 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLS--GGEKELSALALILALASL 97 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeecc--ccHHHHHHHHHHHHhcCC
Confidence 347999999999999999999877665543322221000000000000000000000011 1123334444444332
Q ss_pred CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCc
Q 017792 135 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 196 (366)
Q Consensus 135 ~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~ 196 (366)
..+.++++|.+..-... ...+.+...+.++. .+ ++++|+++|..+
T Consensus 98 ~~~~llllDEp~~gld~-------------~~~~~l~~~l~~~~---~~-~~~vii~TH~~~ 142 (162)
T cd03227 98 KPRPLYILDEIDRGLDP-------------RDGQALAEAILEHL---VK-GAQVIVITHLPE 142 (162)
T ss_pred CCCCEEEEeCCCCCCCH-------------HHHHHHHHHHHHHH---hc-CCEEEEEcCCHH
Confidence 26899999998776520 11233444444443 34 899999999765
No 460
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.29 E-value=9.3e-06 Score=66.59 Aligned_cols=113 Identities=22% Similarity=0.255 Sum_probs=64.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEE
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVV 140 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lv 140 (366)
+.|+||||+||||++..++..+ +-.++.++.....+. ....+...+...+........+.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~vl 62 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPCVL 62 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccc---------------cccccccccccccccccccccceee
Confidence 5799999999999999998886 345667765321110 1111222333333332222237999
Q ss_pred EEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhh--cCcEEEEEecCCccc
Q 017792 141 VVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL--SQTILIFINQVRAKL 198 (366)
Q Consensus 141 viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~--~~~tVI~i~h~~~~~ 198 (366)
++|.+..+.+.. ..... ...+.+...|..+...... .++.||++++..+.+
T Consensus 63 ~iDe~d~l~~~~--~~~~~-----~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i 115 (132)
T PF00004_consen 63 FIDEIDKLFPKS--QPSSS-----SFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKI 115 (132)
T ss_dssp EEETGGGTSHHC--STSSS-----HHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGS
T ss_pred eeccchhccccc--ccccc-----cccccccceeeecccccccccccceeEEeeCChhhC
Confidence 999999998533 11111 1222333344444443333 458999998876553
No 461
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.26 E-value=1.3e-05 Score=66.07 Aligned_cols=79 Identities=28% Similarity=0.428 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHH-HhhcccccCcceecCCCCHHHHHHHHHHHHhcC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSL-AETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 135 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~-~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~ 135 (366)
.+..+.|+||+|+|||||+..++..+...+..+++++......... ....... ............
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 83 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF--------------LVRLLFELAEKA 83 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh--------------hHhHHHHhhccC
Confidence 5678999999999999999999999876677788887654333211 1111100 111111222334
Q ss_pred CceEEEEecccccC
Q 017792 136 SVDVVVVDSVAALV 149 (366)
Q Consensus 136 ~~~lvviDsl~~l~ 149 (366)
...++++|.+..+.
T Consensus 84 ~~~~lilDe~~~~~ 97 (151)
T cd00009 84 KPGVLFIDEIDSLS 97 (151)
T ss_pred CCeEEEEeChhhhh
Confidence 67899999998773
No 462
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.25 E-value=5.5e-07 Score=81.19 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~ 79 (366)
++++|+|||||||||++.+++
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 799999999999999999886
No 463
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.24 E-value=1.5e-06 Score=85.93 Aligned_cols=74 Identities=23% Similarity=0.228 Sum_probs=48.5
Q ss_pred HHHhcCCCceEeccCCCCC--CC---CCcccCChH---HHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 017792 15 ITSSFGKGSIMWLGRSVTP--RH---VPVVSTGSF---ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG 86 (366)
Q Consensus 15 i~~~~~~~~~~~~~~~~~~--~~---~~~i~TG~~---~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g 86 (366)
+++.++......+-..... .+ +.-+++|.+ .|=.-|. =|+..++.+.++||||+|||||++.+++.+.+..
T Consensus 366 ~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~-fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~ 444 (614)
T KOG0927|consen 366 TEKVVGEKVLSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLN-FGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTI 444 (614)
T ss_pred cccccCCceEEEEcccccCCCCCeEEEeccccCCCCcchhhhhhh-cccCcccceeEecCCCCchhhhHHHHhhcccccc
Confidence 5566666554443332222 11 234455544 2222222 3799999999999999999999999999999876
Q ss_pred CeE
Q 017792 87 GYC 89 (366)
Q Consensus 87 g~v 89 (366)
|.|
T Consensus 445 G~v 447 (614)
T KOG0927|consen 445 GMV 447 (614)
T ss_pred ccc
Confidence 654
No 464
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.19 E-value=6.1e-06 Score=83.91 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=30.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 88 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~ 88 (366)
.+++|+-+.|.|+||||||||.+.+++.++-..|.
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~ 449 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR 449 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCc
Confidence 57899999999999999999999999887644443
No 465
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.18 E-value=3.1e-05 Score=71.40 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
.++.|+||||||||||+.+++..+.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~ 47 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLG 47 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4999999999999999999988775
No 466
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.18 E-value=6e-06 Score=89.49 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=53.6
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC---eEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG---YCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALS 126 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg---~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~ 126 (366)
|-+.||.+++|.|++|+|||||+..+++... +| +-+.+++-.......++..||+-|+-......|++|-+.
T Consensus 812 G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t--~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~ 886 (1391)
T KOG0065|consen 812 GAFKPGVLTALMGESGAGKTTLLDVLAGRKT--GGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLR 886 (1391)
T ss_pred eEecCCceeehhcCCCCchHHHHHHHhcCcc--cceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHH
Confidence 5789999999999999999999988876542 22 225666654444678899999988766666666665543
No 467
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.17 E-value=2.9e-05 Score=69.11 Aligned_cols=88 Identities=22% Similarity=0.281 Sum_probs=57.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHH-HHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALS-LVDTL 131 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~-~~~~~ 131 (366)
.++.++||+|+||||.+-.++..+...+.+|.+++.+...- +.+++.+++.+-... ......+++. .+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~--~~~~~~~~~~~~l~~- 78 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVAR--TESDPAEIAREALEK- 78 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESS--TTSCHHHHHHHHHHH-
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhh--cchhhHHHHHHHHHH-
Confidence 47899999999999999999999987788888888764332 245667776532211 1222334333 3333
Q ss_pred HhcCCceEEEEecccccC
Q 017792 132 IRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~ 149 (366)
....+.++|+||......
T Consensus 79 ~~~~~~D~vlIDT~Gr~~ 96 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGRSP 96 (196)
T ss_dssp HHHTTSSEEEEEE-SSSS
T ss_pred HhhcCCCEEEEecCCcch
Confidence 344568999999976543
No 468
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.17 E-value=5e-06 Score=76.66 Aligned_cols=102 Identities=21% Similarity=0.292 Sum_probs=60.4
Q ss_pred HHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC--Ce-EEEEeCCCCCC-HHHHhhcc-----cccCccee
Q 017792 45 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG--GY-CVFIDAEHALD-PSLAETIG-----VKTENLLL 115 (366)
Q Consensus 45 ~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g--g~-vl~id~e~~~~-~~~~~~ig-----~~~~~~~~ 115 (366)
.+|.++. +.+|+.++|+|++|+|||||++.++..+.... .. ++++..+...+ ..+.+.+. -..+....
T Consensus 6 ~id~~~~---i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~ 82 (249)
T cd01128 6 VVDLFAP---IGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPE 82 (249)
T ss_pred heeeecc---cCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHH
Confidence 4566666 67999999999999999999999998876542 23 22334443344 23333331 01111000
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 116 AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 116 ~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
.+..........+..+...+..-++++|++..+.
T Consensus 83 ~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 83 RHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhh
Confidence 0011123344445555555677899999998764
No 469
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.16 E-value=3.2e-06 Score=74.08 Aligned_cols=79 Identities=28% Similarity=0.434 Sum_probs=49.9
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
-+..+.-+.|+|++|+|||.|+..++..+...+..|+|++..+ +...+.-. ....+.++.+..+.
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~-----L~~~l~~~------~~~~~~~~~~~~l~---- 107 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASD-----LLDELKQS------RSDGSYEELLKRLK---- 107 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHH-----HHHHHHCC------HCCTTHCHHHHHHH----
T ss_pred CcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCc-----eecccccc------ccccchhhhcCccc----
Confidence 4556788999999999999999999999988888999987533 22222111 11122334333322
Q ss_pred cCCceEEEEecccccC
Q 017792 134 SGSVDVVVVDSVAALV 149 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~ 149 (366)
.++++|||.+....
T Consensus 108 --~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 108 --RVDLLILDDLGYEP 121 (178)
T ss_dssp --TSSCEEEETCTSS-
T ss_pred --cccEecccccceee
Confidence 58999999997543
No 470
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.15 E-value=4.2e-06 Score=73.59 Aligned_cols=44 Identities=27% Similarity=0.320 Sum_probs=33.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD 99 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~ 99 (366)
+|.|+-+.++|.||+|||||++.+.+.-...+ .++-+.+...+.
T Consensus 37 lp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~-~~v~VlgrsaFh 80 (291)
T KOG2355|consen 37 LPAGSRCLLVGANGAGKTTLLKILSGKHMVGG-GVVQVLGRSAFH 80 (291)
T ss_pred cCCCceEEEEecCCCchhhhHHHhcCcccccC-CeEEEcCcCccc
Confidence 88999999999999999999988876554434 345555554443
No 471
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.15 E-value=1.1e-06 Score=86.72 Aligned_cols=110 Identities=18% Similarity=0.210 Sum_probs=68.8
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HH----HHhh
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PS----LAET 105 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~----~~~~ 105 (366)
.+.+.||+..||.++. +.+|+.++|+|++|+|||||+.+++....+..+ ++++.+|...+ .. +.+.
T Consensus 146 ~~~l~TGi~aID~L~~---I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~g-vv~liGergrev~e~~~~~l~~~r~rt 221 (450)
T PRK06002 146 ETGLRTGVRVIDIFTP---LCAGQRIGIFAGSGVGKSTLLAMLARADAFDTV-VIALVGERGREVREFLEDTLADNLKKA 221 (450)
T ss_pred eEEcCCCcEEeeeece---ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCee-eeeecccCCccHHHHhHHHHHHhhCCe
Confidence 3567899999998865 999999999999999999999888776655444 44444333222 11 1223
Q ss_pred cccccCcc--eecCCCCHHHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 106 IGVKTENL--LLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 106 ig~~~~~~--~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
+++.+|.- ...+.....-.+.+++.+...+.--++++||++.+.
T Consensus 222 I~vV~qsd~~~~~r~~~~~~a~~iAEyfrd~G~~Vll~~DslTr~A 267 (450)
T PRK06002 222 VAVVATSDESPMMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFA 267 (450)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchHHHH
Confidence 45544311 111111223334445555556667788899997654
No 472
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.13 E-value=1.9e-05 Score=78.54 Aligned_cols=123 Identities=22% Similarity=0.277 Sum_probs=69.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
|+.++.-+.|+||||+|||+|++.++..+. ...+.+....... ..+| . ....+..+-....
T Consensus 213 gi~~p~gVLL~GPPGTGKT~LAraIA~el~---~~fi~V~~seL~~----k~~G-----------e-~~~~vr~lF~~A~ 273 (438)
T PTZ00361 213 GIKPPKGVILYGPPGTGKTLLAKAVANETS---ATFLRVVGSELIQ----KYLG-----------D-GPKLVRELFRVAE 273 (438)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHhhC---CCEEEEecchhhh----hhcc-----------h-HHHHHHHHHHHHH
Confidence 677778899999999999999999988763 2333343211110 0111 0 1112222222233
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccc
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 198 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~ 198 (366)
...+.+++||.+..+.....-....++. ...+.+...|..+-......++.||+++|..+.+
T Consensus 274 ~~~P~ILfIDEID~l~~kR~~~~sgg~~---e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 274 ENAPSIVFIDEIDAIGTKRYDATSGGEK---EIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hCCCcEEeHHHHHHHhccCCCCCCcccH---HHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 4567899999998886432211111222 1234445555555433345688899998866543
No 473
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.11 E-value=3.4e-05 Score=70.07 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=23.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.+.++++.|.||||+|||||+++++..
T Consensus 27 ~~~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 27 RGKSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred ecCCeEEEEECCCCCChHHHHHHHHHH
Confidence 457899999999999999999988754
No 474
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.11 E-value=1.4e-05 Score=78.76 Aligned_cols=125 Identities=21% Similarity=0.311 Sum_probs=68.0
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
-|++++.-+.|+||||+|||+|++.++..+. ...+.+.... .....+|. .+..+..+-...
T Consensus 174 ~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~---~~fi~i~~s~----l~~k~~ge------------~~~~lr~lf~~A 234 (398)
T PTZ00454 174 IGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT---ATFIRVVGSE----FVQKYLGE------------GPRMVRDVFRLA 234 (398)
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHhcC---CCEEEEehHH----HHHHhcch------------hHHHHHHHHHHH
Confidence 4688888899999999999999999987653 2233332210 01111111 111222222233
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
....+.++++|.+..+.+.. .+...+.. ....+.+...|..+-..-...++.||+++|..+.++
T Consensus 235 ~~~~P~ILfIDEID~i~~~r-~~~~~~~d--~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LD 298 (398)
T PTZ00454 235 RENAPSIIFIDEVDSIATKR-FDAQTGAD--REVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 298 (398)
T ss_pred HhcCCeEEEEECHhhhcccc-ccccCCcc--HHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCC
Confidence 44578899999999887422 11111110 112244444444443222335788899888665543
No 475
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.11 E-value=7.5e-06 Score=81.38 Aligned_cols=110 Identities=17% Similarity=0.246 Sum_probs=67.1
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HH-HHhhcccc-cCc
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PS-LAETIGVK-TEN 112 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~-~~~~ig~~-~~~ 112 (366)
.+.+.||+..||.++. +.+|+.+.|+|+||+|||||+.++++...+..+ ++..-++...+ .. ....++-. ..+
T Consensus 144 ~e~l~TGi~~iD~l~~---i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~-vi~~iG~r~~ev~~~~~~~~~~~~l~~ 219 (440)
T TIGR01026 144 REILSTGVRSIDGLLT---VGKGQRIGIFAGSGVGKSTLLGMIARNTEADVN-VIALIGERGREVREFIEHDLGEEGLKR 219 (440)
T ss_pred cccccceeeeeeeccc---cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEE-EEEEEeecchHHHHHHHHHhcccccce
Confidence 4578999999999987 899999999999999999999888877654433 33333333222 11 11222210 112
Q ss_pred c-eecC---CCCHH------HHHHHHHHHHhcCCceEEEEecccccC
Q 017792 113 L-LLAQ---PDCGE------QALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 113 ~-~~~~---~~~~e------~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
. .++. ..... -.+...+.+...+.--++++||++.+.
T Consensus 220 tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A 266 (440)
T TIGR01026 220 SVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFA 266 (440)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHH
Confidence 1 1111 11122 223344445556667788999998654
No 476
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.10 E-value=2.3e-06 Score=84.50 Aligned_cols=110 Identities=16% Similarity=0.109 Sum_probs=70.4
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-----HH-H------H
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-----PS-L------A 103 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-----~~-~------~ 103 (366)
-+.+.||+..||.++. +.+|+.++|+|+||+|||||+.++++...+... ++-..++...+ .. + .
T Consensus 136 ~~~l~TGi~aID~ll~---I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~-vig~IGerg~ev~ef~~~~l~~~gl~r 211 (434)
T PRK07196 136 DTPLDVGVNAINGLLT---IGKGQRVGLMAGSGVGKSVLLGMITRYTQADVV-VVGLIGERGREVKEFIEHSLQAAGMAK 211 (434)
T ss_pred ccccccceeeccceEe---EecceEEEEECCCCCCccHHHHHHhcccCCCeE-EEEEEeeecHHHHHHHHHHhhhcccce
Confidence 5689999999999987 999999999999999999999888876644311 11111221111 01 1 1
Q ss_pred hhcccccCcceecCCCCHHHHHHHHHHHH-hcCCceEEEEecccccC
Q 017792 104 ETIGVKTENLLLAQPDCGEQALSLVDTLI-RSGSVDVVVVDSVAALV 149 (366)
Q Consensus 104 ~~ig~~~~~~~~~~~~~~e~~l~~~~~~~-~~~~~~lvviDsl~~l~ 149 (366)
..+++.+++.......++.+....+..+. ..+.--++++||++.+.
T Consensus 212 svvv~~~~d~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a 258 (434)
T PRK07196 212 SVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYA 258 (434)
T ss_pred EEEEEecCCCChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHH
Confidence 12455555554444445555554444443 34556678899997664
No 477
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.08 E-value=2.8e-05 Score=70.49 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=28.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHH-HHhhcCCe
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIA-EAQRQGGY 88 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~-~~~~~gg~ 88 (366)
+.+|+++.|.||||+|||||++.++. .+..+.|.
T Consensus 28 ~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~ 62 (222)
T cd03287 28 AEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGS 62 (222)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 56789999999999999999999998 44555554
No 478
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.08 E-value=1.2e-05 Score=74.27 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
..+++|+||||||||||+..++..+..
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 348999999999999999999888754
No 479
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.07 E-value=2.7e-05 Score=74.42 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=57.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhccc--ccCcceecCCCCHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGV--KTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~--~~~~~~~~~~~~~e~~l~~ 127 (366)
++|.+++|+||||+||||++..++..+.+.+++|++++.+-... ..++.+.++ .++.. .........+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~---~~dpa~~v~~~ 188 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKE---GADPASVAFDA 188 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCC---CCCHHHHHHHH
Confidence 35889999999999999999999999998888888887653211 133444443 22211 11111222222
Q ss_pred HHHHHhcCCceEEEEecccccC
Q 017792 128 VDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 128 ~~~~~~~~~~~lvviDsl~~l~ 149 (366)
+... .....++|+||....+.
T Consensus 189 l~~~-~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 189 IQAA-KARGIDVLIIDTAGRLH 209 (318)
T ss_pred HHHH-HhCCCCEEEEeCCCCCc
Confidence 2222 23568999999987765
No 480
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.07 E-value=2.1e-05 Score=77.90 Aligned_cols=125 Identities=19% Similarity=0.218 Sum_probs=77.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCccee---------cCCCCHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLL---------AQPDCGEQAL 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~---------~~~~~~e~~l 125 (366)
+.+|.-..|.||||||||.|.+.+.+.+.-.+| .+++-.+. ++-|.||++++ .-|++.++..
T Consensus 505 i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g-~L~~P~~~--------~mFYIPQRPYms~gtlRDQIIYPdS~e~~~ 575 (728)
T KOG0064|consen 505 IEPGMHLLITGPNGCGKSSLFRILGGLWPVYNG-LLSIPRPN--------NIFYIPQRPYMSGGTLRDQIIYPDSSEQMK 575 (728)
T ss_pred ecCCceEEEECCCCccHHHHHHHHhccCcccCC-eeecCCCc--------ceEeccCCCccCcCcccceeecCCcHHHHH
Confidence 568899999999999999998877777665555 45543321 25566666643 3456665542
Q ss_pred H----------HH-----HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 126 S----------LV-----DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 126 ~----------~~-----~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
. ++ ..+++... . +|.+..+. ..+++ |++|+...||.+-..
T Consensus 576 ~kg~~d~dL~~iL~~v~L~~i~qr~~-g---~da~~dWk--d~Lsg--GekQR~~mARm~yHrPkyalLDEcTsAvsidv 647 (728)
T KOG0064|consen 576 RKGYTDQDLEAILDIVHLEHILQREG-G---WDAVRDWK--DVLSG--GEKQRMGMARMFYHRPKYALLDECTSAVSIDV 647 (728)
T ss_pred hcCCCHHHHHHHHHHhhHHHHHHhcc-C---hhhhccHH--hhccc--hHHHHHHHHHHHhcCcchhhhhhhhcccccch
Confidence 2 11 11222111 1 45555543 45555 899999888876432
Q ss_pred HHHHHHHhhhcCcEEEEEecCCc
Q 017792 174 LRKLSHSLSLSQTILIFINQVRA 196 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~ 196 (366)
=.++-..++..|++.|-++|..+
T Consensus 648 E~~i~~~ak~~gi~llsithrps 670 (728)
T KOG0064|consen 648 EGKIFQAAKDAGISLLSITHRPS 670 (728)
T ss_pred HHHHHHHHHhcCceEEEeecCcc
Confidence 12333444678999999999654
No 481
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.05 E-value=1.5e-05 Score=79.60 Aligned_cols=152 Identities=19% Similarity=0.297 Sum_probs=97.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CH--HHHhhcccccCcc---eecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP--SLAETIGVKTENL---LLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~--~~~~~ig~~~~~~---~~~~~~~~e~~l~~ 127 (366)
+.+|+|++|+|--|+|+|-|++.+.+.-...+|. ++++++... ++ ....-++|.+++- -++...++.+++..
T Consensus 282 vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~-i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l 360 (500)
T COG1129 282 VRAGEILGIAGLVGAGRTELARALFGARPASSGE-ILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITL 360 (500)
T ss_pred EeCCcEEEEeccccCCHHHHHHHHhCCCcCCCce-EEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheeh
Confidence 6799999999999999999999999955555564 788877432 22 3444566666532 12233333333322
Q ss_pred H--------------------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------
Q 017792 128 V--------------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------- 173 (366)
Q Consensus 128 ~--------------------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------- 173 (366)
. ..+++..+++ ..+...+-..++| |.+|+...+|-+...
T Consensus 361 ~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik-----~~s~~~~v~~LSG--GNQQKVvlarwL~~~p~vLilDEPTRGID 433 (500)
T COG1129 361 ASLRRFSRRGLIDRRKERALAERYIRRLRIK-----TPSPEQPIGTLSG--GNQQKVVLARWLATDPKVLILDEPTRGID 433 (500)
T ss_pred HhhhhhccccccChHHHHHHHHHHHHhcCcc-----cCCccchhhcCCc--hhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence 2 1111111111 1111122344555 788888888876654
Q ss_pred ------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 174 ------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 174 ------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
++++...+.+.|.+||+++-...+ +-.+||+++.|+.+++.
T Consensus 434 VGAK~eIy~li~~lA~~G~ail~iSSElpE------------------ll~~~DRIlVm~~Gri~ 480 (500)
T COG1129 434 VGAKAEIYRLIRELAAEGKAILMISSELPE------------------LLGLSDRILVMREGRIV 480 (500)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEEeCChHH------------------HHhhCCEEEEEECCEEE
Confidence 888888888899999999887665 66689999999977543
No 482
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=3.6e-05 Score=74.49 Aligned_cols=90 Identities=19% Similarity=0.241 Sum_probs=63.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H----HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~----~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+.+|+++.|+||+|+||||++..++..+...+.+|.+++.+.... . .+++.+++.+ ....+..++...+
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv-----~~~~dp~dL~~al 277 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL-----IVATSPAELEEAV 277 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE-----EecCCHHHHHHHH
Confidence 457899999999999999999999988877788899998864322 1 2334444321 1223566666656
Q ss_pred HHHHhcCCceEEEEecccccC
Q 017792 129 DTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 129 ~~~~~~~~~~lvviDsl~~l~ 149 (366)
..+......++|+||......
T Consensus 278 ~~l~~~~~~D~VLIDTAGr~~ 298 (407)
T PRK12726 278 QYMTYVNCVDHILIDTVGRNY 298 (407)
T ss_pred HHHHhcCCCCEEEEECCCCCc
Confidence 555433568999999987654
No 483
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.05 E-value=2.5e-05 Score=70.45 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
++++.|.||||+|||||++.++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 478999999999999999999854
No 484
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.05 E-value=3.2e-05 Score=69.30 Aligned_cols=30 Identities=30% Similarity=0.272 Sum_probs=25.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
...|+++.|.||||+|||||+++++.....
T Consensus 26 ~~~~~~~~l~G~n~~GKstll~~i~~~~~l 55 (204)
T cd03282 26 RGSSRFHIITGPNMSGKSTYLKQIALLAIM 55 (204)
T ss_pred eCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999988766543
No 485
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.04 E-value=2.8e-05 Score=70.27 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++++|.||||+|||||++.++...
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHH
Confidence 899999999999999999987544
No 486
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=0.00013 Score=71.02 Aligned_cols=87 Identities=17% Similarity=0.232 Sum_probs=58.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
+.+++|+||+|+||||++..++..+...+.++.+++.+...- ..+++.+++. +....+..++...+..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgip-----v~v~~d~~~L~~aL~~l 315 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE-----VIAVRDEAAMTRALTYF 315 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCc-----EEecCCHHHHHHHHHHH
Confidence 469999999999999999999998887777888888764321 1223333422 22223455555555544
Q ss_pred HhcCCceEEEEecccccC
Q 017792 132 IRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~ 149 (366)
....+.++++||......
T Consensus 316 k~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 316 KEEARVDYILIDTAGKNY 333 (436)
T ss_pred HhccCCCEEEEeCccccC
Confidence 333358999999887654
No 487
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.03 E-value=0.00012 Score=63.59 Aligned_cols=87 Identities=23% Similarity=0.274 Sum_probs=53.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHH------HHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS------LAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~------~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
++.+.|++|+||||++..++..+...+.++++++.+...... +++..++..-. ...+....+++........
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFE--EGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEe--cCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999888878889999976432211 12233322111 1122334444422222233
Q ss_pred cCCceEEEEeccccc
Q 017792 134 SGSVDVVVVDSVAAL 148 (366)
Q Consensus 134 ~~~~~lvviDsl~~l 148 (366)
....+++++|.....
T Consensus 80 ~~~~d~viiDt~g~~ 94 (173)
T cd03115 80 EENFDVVIVDTAGRL 94 (173)
T ss_pred hCCCCEEEEECcccc
Confidence 456788999986654
No 488
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.03 E-value=1.7e-05 Score=85.58 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=23.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~ 79 (366)
||+|++++|+|++|||||||+..+.
T Consensus 632 Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 632 IPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred EeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 6899999999999999999998875
No 489
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.01 E-value=9.4e-06 Score=78.99 Aligned_cols=105 Identities=19% Similarity=0.270 Sum_probs=62.8
Q ss_pred ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC---CeEEEEeCCCCCC-HHHHhhc-cc----ccCc
Q 017792 42 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG---GYCVFIDAEHALD-PSLAETI-GV----KTEN 112 (366)
Q Consensus 42 G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g---g~vl~id~e~~~~-~~~~~~i-g~----~~~~ 112 (366)
|+..+|-.+. +.+|+.++|+||+|+|||||+..++..+.... ..++++..+...+ ..+.+.+ +. .++.
T Consensus 155 ~~R~id~~~p---ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~ 231 (415)
T TIGR00767 155 STRVLDLFAP---IGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDE 231 (415)
T ss_pred ceeeeeeEEE---eCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCC
Confidence 3444577776 77999999999999999999999988876541 1233444443344 2333333 11 1111
Q ss_pred ceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 113 LLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 113 ~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
....+..-.+.+++.+..+...+.--++++|+++.+.
T Consensus 232 p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 232 PASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChhHHH
Confidence 0000001123445555666666777799999998764
No 490
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.00 E-value=5e-05 Score=67.66 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEe
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFID 93 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id 93 (366)
++.|+||+||||||++..++..+... ++.++.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 78999999999999999988888754 44544443
No 491
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.99 E-value=4e-05 Score=72.19 Aligned_cols=82 Identities=22% Similarity=0.329 Sum_probs=55.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-C-CeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ-G-GYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-g-g~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+.+.++.|+||+|+||||++..++..+... + ..|.+++.+.... ..+++.+++.+ ....+..++...
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~-----~~~~~~~~l~~~ 266 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPV-----KVARDPKELRKA 266 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCce-----eccCCHHHHHHH
Confidence 467899999999999999999999988765 4 6889998775321 12344445432 112234455555
Q ss_pred HHHHHhcCCceEEEEecc
Q 017792 128 VDTLIRSGSVDVVVVDSV 145 (366)
Q Consensus 128 ~~~~~~~~~~~lvviDsl 145 (366)
+..+ ...++|+||..
T Consensus 267 l~~~---~~~d~vliDt~ 281 (282)
T TIGR03499 267 LDRL---RDKDLILIDTA 281 (282)
T ss_pred HHHc---cCCCEEEEeCC
Confidence 5443 34799999974
No 492
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.99 E-value=3.9e-05 Score=67.60 Aligned_cols=23 Identities=39% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.|.||||+|||||+++++...
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~ 23 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV 23 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH
Confidence 36799999999999999998433
No 493
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.98 E-value=0.00017 Score=67.54 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCH-HHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCG-EQALSLVD 129 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~-e~~l~~~~ 129 (366)
++.++.++|++|+||||++..++..+...+.+|.+++.+.... ..|+++.++..- ....+... ......+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~--~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI--KQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEE--eCCCCCCHHHHHHHHHH
Confidence 4679999999999999999999999888888899998764211 134555553210 00111122 22223333
Q ss_pred HHHhcCCceEEEEecccccC
Q 017792 130 TLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 130 ~~~~~~~~~lvviDsl~~l~ 149 (366)
.. ...+.++++||....+.
T Consensus 149 ~~-~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 149 KA-KARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HH-HHCCCCEEEEeCCCCCc
Confidence 32 23568999999987664
No 494
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.98 E-value=1.3e-05 Score=70.73 Aligned_cols=87 Identities=20% Similarity=0.125 Sum_probs=50.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccC--cceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTE--NLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~--~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+..|+.++|+||+|||||||++.++..+.+..+ ++.+.............+++..+ ........+..+++....
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~-~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--- 97 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFIPPDER-IITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSAL--- 97 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCC-EEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHh---
Confidence 567999999999999999999999988775544 45553221111111112222221 111222334555544332
Q ss_pred hcCCceEEEEeccc
Q 017792 133 RSGSVDVVVVDSVA 146 (366)
Q Consensus 133 ~~~~~~lvviDsl~ 146 (366)
...++.+++..+.
T Consensus 98 -R~~pd~i~igEir 110 (186)
T cd01130 98 -RMRPDRIIVGEVR 110 (186)
T ss_pred -ccCCCEEEEEccC
Confidence 2468888887774
No 495
>PF05729 NACHT: NACHT domain
Probab=97.98 E-value=6.6e-05 Score=63.89 Aligned_cols=122 Identities=19% Similarity=0.268 Sum_probs=62.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCC------eEEEEeCCCCCCHHHHhhcccccCcceec-CCCCHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGG------YCVFIDAEHALDPSLAETIGVKTENLLLA-QPDCGEQALSLVDTL 131 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg------~vl~id~e~~~~~~~~~~ig~~~~~~~~~-~~~~~e~~l~~~~~~ 131 (366)
+++.|.|++|+||||++..++..+..... -++|+.............+ .+.... ..............+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~~~~~~~~~~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSL----ADLLFDQLPESIAPIEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchH----HHHHHHhhccchhhhHHHHHHH
Confidence 47899999999999999999988876531 2344544433221111011 000000 000111111123333
Q ss_pred HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecC
Q 017792 132 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 194 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~ 194 (366)
......-++++|.+..+...... .....+...|..+.....-.++.+++++-.
T Consensus 77 ~~~~~~~llilDglDE~~~~~~~----------~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 77 LEKNKRVLLILDGLDELEEQDQS----------QERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred HHcCCceEEEEechHhcccchhh----------hHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 44556678999999888731111 111223344555554322347788887653
No 496
>PRK09183 transposase/IS protein; Provisional
Probab=97.98 E-value=4e-05 Score=71.28 Aligned_cols=41 Identities=32% Similarity=0.430 Sum_probs=35.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
++.|+.+.|+||+|+|||+|+..++..+...|..|.|++..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~ 139 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA 139 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH
Confidence 77899999999999999999999988877778788888743
No 497
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.97 E-value=0.00019 Score=67.25 Aligned_cols=134 Identities=19% Similarity=0.156 Sum_probs=90.9
Q ss_pred cCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC------CeEEEEeCCCCCCH-----HHHhhccc
Q 017792 40 STGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG------GYCVFIDAEHALDP-----SLAETIGV 108 (366)
Q Consensus 40 ~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g------g~vl~id~e~~~~~-----~~~~~ig~ 108 (366)
..-+..|..+|..-.-.+=-...|+|+++.|||+++..+.....+.. -+|+++......+. .+...+|.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 34456666777522222223589999999999999999998765431 25888887655552 34556666
Q ss_pred ccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEE
Q 017792 109 KTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTIL 188 (366)
Q Consensus 109 ~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tV 188 (366)
... ...+..+....+..+++..+++++|||.+..+.. |.. .+.|.+...|+.|. ++..+++
T Consensus 123 P~~-----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa--------Gs~---~~qr~~Ln~LK~L~---NeL~ipi 183 (302)
T PF05621_consen 123 PYR-----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA--------GSY---RKQREFLNALKFLG---NELQIPI 183 (302)
T ss_pred ccC-----CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc--------ccH---HHHHHHHHHHHHHh---hccCCCe
Confidence 542 3345566666666777888999999999988762 221 34577778888887 4568999
Q ss_pred EEEe
Q 017792 189 IFIN 192 (366)
Q Consensus 189 I~i~ 192 (366)
|++.
T Consensus 184 V~vG 187 (302)
T PF05621_consen 184 VGVG 187 (302)
T ss_pred EEec
Confidence 9873
No 498
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=97.97 E-value=4.7e-05 Score=76.19 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=30.9
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 88 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~ 88 (366)
-++.|+-+.|+||||||||.|++.+++++...+|.
T Consensus 457 ~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~ 491 (659)
T KOG0060|consen 457 EVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGK 491 (659)
T ss_pred EecCCCeEEEECCCCCchhHHHHHHhcccccCCCe
Confidence 58999999999999999999999988888766664
No 499
>PRK08181 transposase; Validated
Probab=97.96 E-value=2.6e-05 Score=72.70 Aligned_cols=78 Identities=23% Similarity=0.370 Sum_probs=52.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+..++-+.|+||+|+|||.|+..++..+...|..|+|++..+ +...+.... ...+.++.+..+
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~-----L~~~l~~a~------~~~~~~~~l~~l------ 165 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTD-----LVQKLQVAR------RELQLESAIAKL------ 165 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHH-----HHHHHHHHH------hCCcHHHHHHHH------
Confidence 456778999999999999999999998888888899987532 222221100 112233333322
Q ss_pred CCceEEEEecccccC
Q 017792 135 GSVDVVVVDSVAALV 149 (366)
Q Consensus 135 ~~~~lvviDsl~~l~ 149 (366)
..++++|||.+....
T Consensus 166 ~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 166 DKFDLLILDDLAYVT 180 (269)
T ss_pred hcCCEEEEecccccc
Confidence 257999999997654
No 500
>PRK14974 cell division protein FtsY; Provisional
Probab=97.95 E-value=0.00015 Score=69.64 Aligned_cols=89 Identities=19% Similarity=0.234 Sum_probs=56.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHH-HHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQA-LSLVDT 130 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~-l~~~~~ 130 (366)
+.++.++|+||+||||++..++..+...+..|+++++..... ..++..+|+..-.. ........+ ...+..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~--~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKH--KYGADPAAVAYDAIEH 217 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecc--cCCCCHHHHHHHHHHH
Confidence 579999999999999999999998887777888887653211 12445556532111 111122222 222222
Q ss_pred HHhcCCceEEEEecccccC
Q 017792 131 LIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 131 ~~~~~~~~lvviDsl~~l~ 149 (366)
......++|+||....+.
T Consensus 218 -~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 218 -AKARGIDVVLIDTAGRMH 235 (336)
T ss_pred -HHhCCCCEEEEECCCccC
Confidence 233467899999987664
Done!