Query 017792
Match_columns 366
No_of_seqs 368 out of 4000
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 05:01:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cmu_A Protein RECA, recombina 100.0 1.4E-61 4.7E-66 538.4 31.1 323 3-328 1721-2044(2050)
2 3hr8_A Protein RECA; alpha and 100.0 1.1E-59 3.7E-64 452.1 31.7 326 2-330 5-337 (356)
3 3cmw_A Protein RECA, recombina 100.0 3.5E-59 1.2E-63 515.1 31.8 323 3-328 1377-1700(1706)
4 1xp8_A RECA protein, recombina 100.0 1.7E-53 5.7E-58 411.7 31.4 325 2-329 19-345 (366)
5 1u94_A RECA protein, recombina 100.0 2E-53 7E-58 409.9 31.4 323 3-328 9-332 (356)
6 2zr9_A Protein RECA, recombina 100.0 6.8E-53 2.3E-57 405.8 31.3 324 2-328 6-330 (349)
7 3cmu_A Protein RECA, recombina 100.0 6.8E-50 2.3E-54 444.9 31.7 324 3-329 1373-1697(2050)
8 3io5_A Recombination and repai 100.0 3.9E-49 1.3E-53 368.6 25.4 283 35-324 3-313 (333)
9 3cmw_A Protein RECA, recombina 100.0 3.3E-47 1.1E-51 420.1 30.8 325 3-330 329-654 (1706)
10 1v5w_A DMC1, meiotic recombina 100.0 5.5E-31 1.9E-35 253.0 16.1 246 5-271 74-340 (343)
11 2z43_A DNA repair and recombin 100.0 1.3E-30 4.5E-35 248.6 17.7 245 5-271 59-321 (324)
12 2i1q_A DNA repair and recombin 100.0 4.8E-30 1.6E-34 244.3 16.2 244 5-270 50-321 (322)
13 3lda_A DNA repair protein RAD5 100.0 6.4E-29 2.2E-33 242.4 18.2 223 34-272 155-395 (400)
14 1n0w_A DNA repair protein RAD5 100.0 9.1E-28 3.1E-32 218.2 20.5 221 35-271 2-240 (243)
15 1pzn_A RAD51, DNA repair and r 100.0 2.5E-28 8.7E-33 234.9 17.3 245 4-270 81-348 (349)
16 4a74_A DNA repair and recombin 99.9 2.9E-25 1E-29 199.9 19.5 206 35-270 3-230 (231)
17 2cvh_A DNA repair and recombin 99.9 3.9E-25 1.3E-29 197.7 18.3 206 38-270 1-217 (220)
18 2zts_A Putative uncharacterize 99.9 3.7E-25 1.3E-29 201.5 16.6 210 33-270 6-243 (251)
19 2dr3_A UPF0273 protein PH0284; 99.9 9.6E-25 3.3E-29 198.5 18.5 204 36-271 2-233 (247)
20 3bh0_A DNAB-like replicative h 99.9 9.6E-24 3.3E-28 200.3 23.3 234 6-268 32-301 (315)
21 4a1f_A DNAB helicase, replicat 99.9 4.9E-24 1.7E-28 203.1 17.7 242 5-271 5-313 (338)
22 2q6t_A DNAB replication FORK h 99.9 4.6E-23 1.6E-27 204.5 21.9 227 34-272 178-437 (444)
23 2r6a_A DNAB helicase, replicat 99.9 4.8E-23 1.6E-27 204.9 21.4 244 6-274 164-440 (454)
24 3bgw_A DNAB-like replicative h 99.9 1.8E-22 6.3E-27 199.8 25.3 223 35-272 176-434 (444)
25 2w0m_A SSO2452; RECA, SSPF, un 99.9 3E-22 1E-26 180.1 19.6 203 37-271 3-229 (235)
26 2ehv_A Hypothetical protein PH 99.9 3.2E-22 1.1E-26 182.2 17.1 209 34-271 7-244 (251)
27 1q57_A DNA primase/helicase; d 99.9 2.2E-20 7.7E-25 188.0 22.6 215 34-268 219-475 (503)
28 1nlf_A Regulatory protein REPA 99.9 3.5E-21 1.2E-25 179.3 13.0 214 35-270 9-260 (279)
29 1tf7_A KAIC; homohexamer, hexa 99.8 7.5E-20 2.6E-24 185.0 20.6 207 35-270 259-478 (525)
30 1cr0_A DNA primase/helicase; R 99.8 9.3E-19 3.2E-23 164.1 18.7 206 34-256 12-258 (296)
31 1tf7_A KAIC; homohexamer, hexa 99.7 5.4E-17 1.8E-21 164.1 16.7 201 33-263 15-239 (525)
32 3bs4_A Uncharacterized protein 99.7 4.1E-16 1.4E-20 143.0 15.3 73 38-111 2-76 (260)
33 3tui_C Methionine import ATP-b 99.6 1.5E-16 5.1E-21 152.6 4.9 160 55-236 51-247 (366)
34 3rlf_A Maltose/maltodextrin im 99.6 2.4E-16 8.3E-21 152.0 4.1 159 55-235 26-216 (381)
35 3gfo_A Cobalt import ATP-bindi 99.6 4.4E-16 1.5E-20 144.5 4.8 159 55-235 31-226 (275)
36 1vpl_A ABC transporter, ATP-bi 99.6 5.6E-16 1.9E-20 142.4 5.0 156 55-232 38-225 (256)
37 3fvq_A Fe(3+) IONS import ATP- 99.6 2.7E-16 9.2E-21 150.7 2.9 159 55-235 27-221 (359)
38 3tif_A Uncharacterized ABC tra 99.6 2.1E-15 7.3E-20 136.8 8.1 157 55-234 28-226 (235)
39 1b0u_A Histidine permease; ABC 99.6 3.7E-16 1.3E-20 144.2 2.9 157 55-233 29-233 (262)
40 4g1u_C Hemin import ATP-bindin 99.6 2.7E-15 9.3E-20 138.6 8.6 154 55-235 34-230 (266)
41 2olj_A Amino acid ABC transpor 99.6 4.6E-16 1.6E-20 143.5 3.3 157 55-233 47-239 (263)
42 2pcj_A ABC transporter, lipopr 99.6 2.7E-15 9.3E-20 135.1 7.4 157 55-234 27-220 (224)
43 3d31_A Sulfate/molybdate ABC t 99.6 7.1E-16 2.4E-20 147.5 3.3 157 55-233 23-208 (348)
44 1g6h_A High-affinity branched- 99.6 4.3E-15 1.5E-19 136.7 8.3 159 54-233 29-233 (257)
45 2vhj_A Ntpase P4, P4; non- hyd 99.6 2.6E-15 8.9E-20 140.9 6.0 131 37-195 104-236 (331)
46 2it1_A 362AA long hypothetical 99.5 1.3E-15 4.4E-20 146.3 3.8 158 55-234 26-215 (362)
47 2yz2_A Putative ABC transporte 99.5 6.3E-15 2.1E-19 136.2 8.1 157 55-233 30-218 (266)
48 2yyz_A Sugar ABC transporter, 99.5 4.3E-15 1.5E-19 142.6 7.1 158 55-234 26-215 (359)
49 1v43_A Sugar-binding transport 99.5 4.8E-15 1.6E-19 142.9 7.4 157 55-234 34-223 (372)
50 1z47_A CYSA, putative ABC-tran 99.5 1.3E-15 4.3E-20 146.0 2.5 158 55-234 38-227 (355)
51 1g29_1 MALK, maltose transport 99.5 1.3E-15 4.5E-20 147.0 2.6 159 55-235 26-222 (372)
52 1ji0_A ABC transporter; ATP bi 99.5 1.7E-15 5.9E-20 137.9 1.5 157 55-232 29-218 (240)
53 2d2e_A SUFC protein; ABC-ATPas 99.5 1.7E-14 5.9E-19 132.0 8.1 156 55-232 26-223 (250)
54 2onk_A Molybdate/tungstate ABC 99.5 6.4E-15 2.2E-19 134.1 5.0 151 55-233 22-207 (240)
55 1oxx_K GLCV, glucose, ABC tran 99.5 3.9E-15 1.3E-19 142.7 3.5 158 55-234 28-222 (353)
56 2qi9_C Vitamin B12 import ATP- 99.5 2.3E-14 7.8E-19 131.1 8.1 151 55-233 23-213 (249)
57 2ihy_A ABC transporter, ATP-bi 99.5 1.2E-14 4.1E-19 135.2 5.8 152 55-233 44-243 (279)
58 2zu0_C Probable ATP-dependent 99.5 5.5E-14 1.9E-18 129.9 9.3 158 55-233 43-245 (267)
59 2ff7_A Alpha-hemolysin translo 99.5 4E-15 1.4E-19 136.0 1.6 150 55-233 32-223 (247)
60 2ixe_A Antigen peptide transpo 99.5 1.3E-14 4.5E-19 134.4 3.7 155 55-233 42-236 (271)
61 3nh6_A ATP-binding cassette SU 99.5 1.2E-14 4.1E-19 136.7 3.2 156 55-235 77-270 (306)
62 2nq2_C Hypothetical ABC transp 99.5 4.5E-14 1.5E-18 129.5 6.0 144 55-230 28-206 (253)
63 1mv5_A LMRA, multidrug resista 99.4 1.3E-14 4.5E-19 132.3 1.1 155 55-234 25-218 (243)
64 1sgw_A Putative ABC transporte 99.4 1.8E-14 6.1E-19 128.8 1.2 137 55-197 32-195 (214)
65 2ghi_A Transport protein; mult 99.4 7.8E-14 2.7E-18 128.4 5.3 152 55-232 43-232 (260)
66 3gd7_A Fusion complex of cysti 99.4 3.1E-13 1.1E-17 131.1 8.5 151 55-235 44-235 (390)
67 3b5x_A Lipid A export ATP-bind 99.4 3.7E-13 1.3E-17 137.6 6.4 156 55-235 366-560 (582)
68 2pjz_A Hypothetical protein ST 99.4 5.6E-13 1.9E-17 122.8 6.0 153 55-235 28-208 (263)
69 2pze_A Cystic fibrosis transme 99.3 4.4E-13 1.5E-17 121.0 4.2 146 55-234 31-210 (229)
70 3b60_A Lipid A export ATP-bind 99.3 1.3E-12 4.5E-17 133.5 7.9 155 55-234 366-559 (582)
71 2cbz_A Multidrug resistance-as 99.3 2.5E-12 8.6E-17 116.7 7.8 141 55-232 28-207 (237)
72 3qf4_B Uncharacterized ABC tra 99.3 1.4E-12 4.6E-17 133.8 6.3 157 55-236 378-572 (598)
73 4a82_A Cystic fibrosis transme 99.3 8.8E-13 3E-17 134.7 3.9 156 55-235 364-557 (578)
74 2yl4_A ATP-binding cassette SU 99.3 1.8E-12 6.2E-17 132.8 5.9 156 55-235 367-563 (595)
75 3qf4_A ABC transporter, ATP-bi 99.3 1.1E-12 3.7E-17 134.2 3.9 157 55-235 366-559 (587)
76 2bbs_A Cystic fibrosis transme 99.2 2.5E-12 8.4E-17 120.1 3.9 142 55-230 61-235 (290)
77 3bk7_A ABC transporter ATP-bin 99.2 3.8E-12 1.3E-16 130.3 2.3 142 55-228 379-547 (607)
78 1yqt_A RNAse L inhibitor; ATP- 99.2 4E-12 1.4E-16 128.5 2.5 142 55-228 309-477 (538)
79 3ozx_A RNAse L inhibitor; ATP 99.2 2.6E-11 8.9E-16 122.5 7.6 144 55-229 291-462 (538)
80 3g5u_A MCG1178, multidrug resi 99.1 3.3E-11 1.1E-15 133.2 6.8 155 55-234 1056-1250(1284)
81 3g5u_A MCG1178, multidrug resi 99.1 4.1E-11 1.4E-15 132.5 6.8 156 55-235 413-606 (1284)
82 4f4c_A Multidrug resistance pr 99.1 1.1E-10 3.7E-15 129.4 8.8 154 55-236 1102-1298(1321)
83 4f4c_A Multidrug resistance pr 99.0 6.7E-11 2.3E-15 131.1 4.6 154 55-235 441-634 (1321)
84 3j16_B RLI1P; ribosome recycli 99.0 3.9E-11 1.3E-15 122.7 1.2 139 53-228 373-543 (608)
85 1yqt_A RNAse L inhibitor; ATP- 99.0 1E-10 3.5E-15 118.3 3.1 34 55-88 44-77 (538)
86 2b8t_A Thymidine kinase; deoxy 99.0 1.9E-09 6.4E-14 96.6 9.5 140 56-228 10-151 (223)
87 3bk7_A ABC transporter ATP-bin 98.9 1.5E-10 5E-15 118.5 2.0 34 55-88 114-147 (607)
88 1rj9_A FTSY, signal recognitio 98.9 2.9E-09 1E-13 99.9 7.8 86 57-147 101-195 (304)
89 3ux8_A Excinuclease ABC, A sub 98.9 1.3E-09 4.5E-14 113.1 5.9 21 55-75 41-61 (670)
90 3ozx_A RNAse L inhibitor; ATP 98.8 5.5E-09 1.9E-13 105.4 8.5 34 55-88 22-55 (538)
91 3b9q_A Chloroplast SRP recepto 98.8 5.6E-09 1.9E-13 97.9 7.8 87 55-146 97-193 (302)
92 2iw3_A Elongation factor 3A; a 98.8 5.8E-09 2E-13 111.1 8.2 26 55-80 458-483 (986)
93 2og2_A Putative signal recogni 98.8 1E-08 3.4E-13 98.3 9.0 87 55-146 154-250 (359)
94 3j16_B RLI1P; ribosome recycli 98.8 5.7E-09 2E-13 106.7 7.7 35 55-89 100-134 (608)
95 2npi_A Protein CLP1; CLP1-PCF1 98.8 5.1E-10 1.8E-14 110.8 -0.8 54 55-114 135-189 (460)
96 2kjq_A DNAA-related protein; s 98.8 3.1E-08 1.1E-12 83.0 9.7 101 42-194 23-124 (149)
97 2iw3_A Elongation factor 3A; a 98.8 1.9E-09 6.4E-14 114.8 2.4 38 55-93 696-733 (986)
98 3e70_C DPA, signal recognition 98.7 8E-08 2.7E-12 91.0 13.0 88 56-147 127-222 (328)
99 2yhs_A FTSY, cell division pro 98.7 7.5E-08 2.6E-12 95.4 12.4 90 55-149 290-388 (503)
100 3ec2_A DNA replication protein 98.7 8.5E-08 2.9E-12 82.4 10.5 111 53-196 33-144 (180)
101 3ux8_A Excinuclease ABC, A sub 98.7 2E-08 7E-13 104.1 6.5 25 55-79 345-369 (670)
102 3b85_A Phosphate starvation-in 98.6 2.3E-09 7.9E-14 95.1 -1.5 58 54-113 18-75 (208)
103 2dpy_A FLII, flagellum-specifi 98.6 1.5E-08 5.1E-13 99.7 4.0 106 38-147 140-258 (438)
104 4gp7_A Metallophosphoesterase; 98.6 4.5E-09 1.6E-13 90.1 0.2 23 55-77 6-28 (171)
105 2eyu_A Twitching motility prot 98.5 5.6E-07 1.9E-11 82.5 11.8 39 55-93 22-61 (261)
106 3jvv_A Twitching mobility prot 98.5 2.3E-07 8E-12 88.8 9.6 113 56-198 121-234 (356)
107 2r6f_A Excinuclease ABC subuni 98.5 2.2E-07 7.6E-12 98.4 8.4 25 55-79 647-671 (972)
108 2vf7_A UVRA2, excinuclease ABC 98.5 9.7E-08 3.3E-12 100.6 5.5 29 54-82 519-548 (842)
109 4aby_A DNA repair protein RECN 98.5 2.1E-07 7.3E-12 90.6 7.5 28 55-83 58-85 (415)
110 3pih_A Uvrabc system protein A 98.4 1.6E-07 5.4E-12 99.8 6.5 22 55-76 607-628 (916)
111 2ygr_A Uvrabc system protein A 98.4 9.2E-07 3.1E-11 94.1 11.1 25 55-79 665-689 (993)
112 2pt7_A CAG-ALFA; ATPase, prote 98.4 3.3E-07 1.1E-11 86.8 6.7 83 55-147 168-251 (330)
113 4b4t_J 26S protease regulatory 98.4 4.4E-06 1.5E-10 80.8 14.3 124 54-199 178-301 (405)
114 2ewv_A Twitching motility prot 98.4 1.1E-06 3.6E-11 84.7 10.0 86 55-146 133-219 (372)
115 4b4t_L 26S protease subunit RP 98.3 5.5E-06 1.9E-10 81.1 13.9 125 53-199 210-334 (437)
116 4b4t_K 26S protease regulatory 98.3 4.7E-06 1.6E-10 81.4 13.2 124 54-199 202-325 (428)
117 4b4t_I 26S protease regulatory 98.3 8.2E-06 2.8E-10 79.3 14.7 125 53-199 211-335 (437)
118 1c9k_A COBU, adenosylcobinamid 98.3 7.1E-08 2.4E-12 83.3 -0.2 124 60-193 1-134 (180)
119 1fnn_A CDC6P, cell division co 98.3 9.6E-06 3.3E-10 77.5 14.5 114 60-195 46-169 (389)
120 1s96_A Guanylate kinase, GMP k 98.3 2.6E-07 8.9E-12 82.4 2.8 31 54-84 12-42 (219)
121 1htw_A HI0065; nucleotide-bind 98.3 1.4E-07 4.9E-12 79.8 0.9 39 55-95 30-68 (158)
122 1j8m_F SRP54, signal recogniti 98.3 3.9E-06 1.3E-10 78.2 10.5 108 38-148 72-192 (297)
123 4b4t_M 26S protease regulatory 98.3 5.5E-06 1.9E-10 81.1 11.9 125 53-199 210-334 (434)
124 1vma_A Cell division protein F 98.2 1.5E-05 5.3E-10 74.5 14.1 88 56-147 102-197 (306)
125 1ye8_A Protein THEP1, hypothet 98.2 3.7E-06 1.3E-10 72.4 8.9 24 60-83 2-25 (178)
126 1sq5_A Pantothenate kinase; P- 98.2 3.3E-06 1.1E-10 79.1 9.1 78 55-133 77-157 (308)
127 3qf7_A RAD50; ABC-ATPase, ATPa 98.2 1.7E-05 5.7E-10 76.2 14.0 27 55-82 21-47 (365)
128 3thx_A DNA mismatch repair pro 98.2 1.6E-06 5.4E-11 92.5 7.4 27 55-81 659-685 (934)
129 2orw_A Thymidine kinase; TMTK, 98.2 2E-06 6.7E-11 74.5 6.7 110 57-196 2-114 (184)
130 2qby_A CDC6 homolog 1, cell di 98.2 7.7E-06 2.6E-10 77.8 10.8 90 56-149 43-141 (386)
131 3h4m_A Proteasome-activating n 98.2 1.4E-05 4.7E-10 73.4 12.0 78 54-150 47-124 (285)
132 4b4t_H 26S protease regulatory 98.2 1.8E-05 6.2E-10 77.6 13.4 124 54-199 239-362 (467)
133 1oft_A SULA, hypothetical prot 98.2 2.1E-05 7.1E-10 66.0 11.8 107 37-143 23-132 (161)
134 2gza_A Type IV secretion syste 98.1 2.7E-06 9.2E-11 81.6 6.5 86 55-145 172-261 (361)
135 2qm8_A GTPase/ATPase; G protei 98.1 2.2E-06 7.6E-11 81.4 5.8 93 55-148 52-159 (337)
136 3kl4_A SRP54, signal recogniti 98.1 4E-05 1.4E-09 74.9 14.3 102 43-147 76-190 (433)
137 2obl_A ESCN; ATPase, hydrolase 98.1 2.2E-06 7.4E-11 81.8 5.0 55 37-95 53-107 (347)
138 1xx6_A Thymidine kinase; NESG, 98.1 8.2E-06 2.8E-10 71.1 8.3 134 56-227 6-142 (191)
139 1sxj_E Activator 1 40 kDa subu 98.1 2.6E-05 8.9E-10 73.8 12.0 117 61-197 39-176 (354)
140 1zu4_A FTSY; GTPase, signal re 98.0 1.8E-05 6.2E-10 74.5 10.3 41 56-96 103-143 (320)
141 2o8b_B DNA mismatch repair pro 98.0 4.2E-05 1.4E-09 82.5 14.2 25 58-83 789-813 (1022)
142 1ewq_A DNA mismatch repair pro 98.0 1.4E-05 4.7E-10 83.7 9.9 115 58-197 576-700 (765)
143 2v1u_A Cell division control p 98.0 4E-05 1.4E-09 72.9 12.4 90 56-149 42-143 (387)
144 3thx_B DNA mismatch repair pro 98.0 6.9E-06 2.3E-10 87.4 7.3 28 55-82 670-697 (918)
145 2j9r_A Thymidine kinase; TK1, 98.0 1.1E-05 3.9E-10 71.2 7.3 134 56-227 26-162 (214)
146 1zp6_A Hypothetical protein AT 98.0 3.6E-06 1.2E-10 72.5 4.1 39 54-95 5-43 (191)
147 1e69_A Chromosome segregation 98.0 2.4E-05 8.1E-10 73.7 10.0 26 55-81 22-47 (322)
148 3bos_A Putative DNA replicatio 98.0 1.5E-05 5.1E-10 70.6 7.9 49 44-95 41-89 (242)
149 1lv7_A FTSH; alpha/beta domain 98.0 8E-05 2.7E-09 67.3 12.7 75 55-150 44-118 (257)
150 1wb9_A DNA mismatch repair pro 98.0 3.2E-05 1.1E-09 81.4 11.3 28 56-83 605-632 (800)
151 2orv_A Thymidine kinase; TP4A 98.0 4.5E-05 1.5E-09 68.0 10.7 109 57-197 18-128 (234)
152 2ce7_A Cell division protein F 98.0 6.2E-05 2.1E-09 74.6 12.8 122 54-199 47-168 (476)
153 1xwi_A SKD1 protein; VPS4B, AA 98.0 7E-05 2.4E-09 70.4 12.6 80 53-150 40-119 (322)
154 3aez_A Pantothenate kinase; tr 97.9 4.4E-06 1.5E-10 78.4 3.7 33 55-87 87-119 (312)
155 3ice_A Transcription terminati 97.9 9.7E-06 3.3E-10 77.7 5.8 106 37-149 156-274 (422)
156 2px0_A Flagellar biosynthesis 97.9 5E-05 1.7E-09 70.7 10.5 81 56-144 103-190 (296)
157 1znw_A Guanylate kinase, GMP k 97.9 5.7E-06 2E-10 72.6 3.8 29 55-83 17-45 (207)
158 3dm5_A SRP54, signal recogniti 97.9 0.00037 1.3E-08 68.2 16.9 90 57-148 99-194 (443)
159 1z6g_A Guanylate kinase; struc 97.9 7.1E-06 2.4E-10 72.8 4.1 34 55-91 20-53 (218)
160 3cf0_A Transitional endoplasmi 97.9 7.7E-06 2.6E-10 76.2 4.4 122 54-198 45-167 (301)
161 2x8a_A Nuclear valosin-contain 97.9 6E-05 2.1E-09 69.3 10.2 76 54-150 42-117 (274)
162 2qz4_A Paraplegin; AAA+, SPG7, 97.9 9.4E-05 3.2E-09 66.7 11.4 78 54-150 35-112 (262)
163 3szr_A Interferon-induced GTP- 97.9 3.6E-06 1.2E-10 86.2 2.1 69 61-130 48-123 (608)
164 3sop_A Neuronal-specific septi 97.9 2.5E-06 8.7E-11 78.4 0.8 53 60-113 4-56 (270)
165 3c8u_A Fructokinase; YP_612366 97.9 1.2E-05 4E-10 70.7 5.0 32 55-86 19-50 (208)
166 1lw7_A Transcriptional regulat 97.9 1.3E-05 4.4E-10 76.8 5.6 34 53-86 163-198 (365)
167 4eun_A Thermoresistant glucoki 97.9 1.3E-05 4.6E-10 69.8 5.3 52 56-112 27-80 (200)
168 1ls1_A Signal recognition part 97.9 5.7E-05 1.9E-09 70.2 9.8 90 57-148 97-192 (295)
169 3b9p_A CG5977-PA, isoform A; A 97.8 0.0002 6.8E-09 66.0 13.5 76 56-150 52-127 (297)
170 2v9p_A Replication protein E1; 97.8 1.4E-05 4.9E-10 74.6 5.3 42 44-90 114-155 (305)
171 1w4r_A Thymidine kinase; type 97.8 5.1E-05 1.8E-09 65.9 8.3 110 56-197 18-129 (195)
172 1l8q_A Chromosomal replication 97.8 5.4E-05 1.8E-09 70.9 9.2 40 56-95 35-74 (324)
173 2i3b_A HCR-ntpase, human cance 97.8 2.7E-06 9.4E-11 74.0 0.0 52 58-112 1-53 (189)
174 3uie_A Adenylyl-sulfate kinase 97.8 2.3E-05 7.8E-10 68.3 5.7 40 56-95 23-62 (200)
175 1rz3_A Hypothetical protein rb 97.8 3.1E-05 1.1E-09 67.6 6.3 41 55-95 19-59 (201)
176 3t15_A Ribulose bisphosphate c 97.8 4.8E-05 1.7E-09 70.5 7.9 83 53-150 31-113 (293)
177 4fcw_A Chaperone protein CLPB; 97.8 0.00013 4.6E-09 67.4 10.9 85 58-149 47-132 (311)
178 2ffh_A Protein (FFH); SRP54, s 97.8 0.00011 3.7E-09 71.8 10.5 89 57-148 97-192 (425)
179 3tr0_A Guanylate kinase, GMP k 97.8 1.6E-05 5.5E-10 69.1 4.2 28 55-82 4-31 (205)
180 3cf2_A TER ATPase, transitiona 97.7 0.00012 4.2E-09 76.7 11.1 123 53-200 233-355 (806)
181 2pez_A Bifunctional 3'-phospho 97.7 3.1E-05 1.1E-09 66.0 5.5 39 56-94 3-41 (179)
182 3eie_A Vacuolar protein sortin 97.7 0.00014 4.8E-09 68.2 10.5 79 53-150 46-124 (322)
183 3asz_A Uridine kinase; cytidin 97.7 2.9E-05 1E-09 67.9 4.9 29 56-84 4-32 (211)
184 1jbk_A CLPB protein; beta barr 97.7 0.00038 1.3E-08 58.7 11.7 92 43-150 31-129 (195)
185 2yvu_A Probable adenylyl-sulfa 97.7 4.7E-05 1.6E-09 65.3 5.8 47 45-94 3-49 (186)
186 2z4s_A Chromosomal replication 97.7 0.00036 1.2E-08 68.5 12.8 106 58-195 130-237 (440)
187 1kgd_A CASK, peripheral plasma 97.7 2.7E-05 9.2E-10 66.8 4.2 30 54-83 1-30 (180)
188 2r8r_A Sensor protein; KDPD, P 97.7 0.00077 2.6E-08 59.9 13.6 44 57-100 4-48 (228)
189 1lvg_A Guanylate kinase, GMP k 97.7 2.3E-05 7.7E-10 68.4 3.6 29 55-83 1-29 (198)
190 3a00_A Guanylate kinase, GMP k 97.7 2.4E-05 8.2E-10 67.4 3.6 36 58-93 1-36 (186)
191 2qp9_X Vacuolar protein sortin 97.6 0.00027 9.4E-09 67.3 10.9 79 53-150 79-157 (355)
192 1sky_E F1-ATPase, F1-ATP synth 97.6 7.5E-05 2.6E-09 73.4 6.9 55 36-93 132-187 (473)
193 1ypw_A Transitional endoplasmi 97.6 0.00016 5.6E-09 76.3 9.8 120 54-199 234-354 (806)
194 1ixz_A ATP-dependent metallopr 97.6 0.00021 7.1E-09 64.4 9.2 36 54-94 47-82 (254)
195 1p9r_A General secretion pathw 97.6 5.1E-05 1.8E-09 74.0 5.2 39 56-94 165-203 (418)
196 2jeo_A Uridine-cytidine kinase 97.6 4.2E-05 1.5E-09 68.9 4.1 59 54-125 21-79 (245)
197 2j41_A Guanylate kinase; GMP, 97.6 4.7E-05 1.6E-09 66.1 4.1 30 55-84 3-32 (207)
198 3lnc_A Guanylate kinase, GMP k 97.5 2.8E-05 9.7E-10 69.2 2.2 29 55-83 24-53 (231)
199 1tue_A Replication protein E1; 97.5 3.1E-05 1.1E-09 67.9 2.2 72 8-82 10-82 (212)
200 2zan_A Vacuolar protein sortin 97.5 0.0008 2.7E-08 66.1 12.6 80 53-150 162-241 (444)
201 2v3c_C SRP54, signal recogniti 97.5 0.00019 6.4E-09 70.3 7.8 51 45-96 80-137 (432)
202 2bdt_A BH3686; alpha-beta prot 97.5 8.4E-05 2.9E-09 63.8 4.6 34 58-95 2-35 (189)
203 1knq_A Gluconate kinase; ALFA/ 97.5 7.7E-05 2.6E-09 63.2 4.2 38 56-98 6-43 (175)
204 2p65_A Hypothetical protein PF 97.5 0.0003 1E-08 59.3 7.9 28 57-84 42-69 (187)
205 3euj_A Chromosome partition pr 97.5 6.2E-05 2.1E-09 74.6 3.9 40 55-96 27-66 (483)
206 3syl_A Protein CBBX; photosynt 97.4 0.0012 4.3E-08 60.8 12.5 39 56-94 65-107 (309)
207 1iy2_A ATP-dependent metallopr 97.4 0.00039 1.3E-08 63.6 8.9 35 55-94 72-106 (278)
208 2f1r_A Molybdopterin-guanine d 97.4 9.7E-05 3.3E-09 63.0 4.4 38 59-96 3-42 (171)
209 1sxj_A Activator 1 95 kDa subu 97.4 0.00085 2.9E-08 67.1 12.0 86 56-150 75-162 (516)
210 3hu3_A Transitional endoplasmi 97.4 0.00077 2.6E-08 67.0 11.5 77 55-150 235-311 (489)
211 3n70_A Transport activator; si 97.4 0.00019 6.4E-09 59.1 6.0 38 57-95 23-60 (145)
212 3tqc_A Pantothenate kinase; bi 97.4 0.00032 1.1E-08 65.9 8.3 37 60-96 94-132 (321)
213 1t9h_A YLOQ, probable GTPase E 97.4 1.5E-05 5.1E-10 74.5 -0.9 70 55-124 170-247 (307)
214 2qby_B CDC6 homolog 3, cell di 97.4 0.00023 7.8E-09 67.8 7.4 87 58-149 45-146 (384)
215 2chg_A Replication factor C sm 97.4 0.0013 4.4E-08 56.8 11.7 83 43-149 26-115 (226)
216 3vfd_A Spastin; ATPase, microt 97.4 0.0019 6.4E-08 62.1 13.7 76 56-150 146-221 (389)
217 3tau_A Guanylate kinase, GMP k 97.4 9.5E-05 3.2E-09 64.9 4.0 28 56-83 6-33 (208)
218 2rcn_A Probable GTPase ENGC; Y 97.4 3.8E-05 1.3E-09 73.3 1.5 70 41-117 204-274 (358)
219 3d8b_A Fidgetin-like protein 1 97.4 0.00087 3E-08 63.8 11.1 76 56-150 115-190 (357)
220 3l0o_A Transcription terminati 97.4 0.00065 2.2E-08 65.1 9.9 105 37-149 157-275 (427)
221 3te6_A Regulatory protein SIR3 97.4 0.0023 7.9E-08 59.9 13.5 96 46-149 36-145 (318)
222 1w5s_A Origin recognition comp 97.4 0.00062 2.1E-08 65.4 9.7 89 57-149 49-151 (412)
223 3e2i_A Thymidine kinase; Zn-bi 97.4 0.00048 1.6E-08 60.7 8.0 135 55-227 25-162 (219)
224 1svm_A Large T antigen; AAA+ f 97.3 0.00025 8.7E-09 68.1 6.6 35 54-91 165-199 (377)
225 1njg_A DNA polymerase III subu 97.3 0.00032 1.1E-08 61.4 6.8 26 59-84 46-71 (250)
226 2dhr_A FTSH; AAA+ protein, hex 97.3 0.00069 2.3E-08 67.5 9.5 37 54-95 62-98 (499)
227 2xxa_A Signal recognition part 97.3 0.0013 4.5E-08 64.3 11.3 99 43-147 79-194 (433)
228 1g5t_A COB(I)alamin adenosyltr 97.3 0.0023 7.7E-08 55.6 11.5 93 56-149 27-133 (196)
229 1m7g_A Adenylylsulfate kinase; 97.3 0.00024 8.1E-09 62.3 5.5 40 55-94 22-62 (211)
230 2vp4_A Deoxynucleoside kinase; 97.3 0.00011 3.8E-09 65.5 3.3 35 54-92 16-50 (230)
231 2ck3_D ATP synthase subunit be 97.3 0.0011 3.7E-08 65.2 10.4 56 35-93 133-189 (482)
232 1sxj_C Activator 1 40 kDa subu 97.3 0.00087 3E-08 63.1 9.2 26 61-86 49-74 (340)
233 2j37_W Signal recognition part 97.3 0.0018 6.1E-08 64.5 11.8 102 44-149 81-196 (504)
234 3vaa_A Shikimate kinase, SK; s 97.3 0.00019 6.5E-09 62.3 4.2 28 55-82 22-49 (199)
235 3cr8_A Sulfate adenylyltranfer 97.2 0.00018 6.1E-09 72.6 4.4 41 55-95 366-407 (552)
236 2qe7_A ATP synthase subunit al 97.2 0.00074 2.5E-08 66.7 8.5 110 36-148 143-266 (502)
237 2rhm_A Putative kinase; P-loop 97.2 0.00022 7.5E-09 61.0 4.2 29 54-82 1-29 (193)
238 2r9v_A ATP synthase subunit al 97.2 0.00071 2.4E-08 66.9 8.2 110 36-148 156-279 (515)
239 1d2n_A N-ethylmaleimide-sensit 97.2 0.001 3.6E-08 60.4 8.8 38 54-94 60-97 (272)
240 1kag_A SKI, shikimate kinase I 97.2 0.00018 6.2E-09 60.6 3.3 33 57-94 3-35 (173)
241 2w58_A DNAI, primosome compone 97.2 0.00039 1.3E-08 60.1 5.6 36 59-94 55-90 (202)
242 1fx0_B ATP synthase beta chain 97.2 0.00082 2.8E-08 66.3 8.3 55 36-93 146-201 (498)
243 2ck3_A ATP synthase subunit al 97.2 0.0011 3.7E-08 65.6 9.2 111 36-149 143-275 (510)
244 3oaa_A ATP synthase subunit al 97.2 0.00091 3.1E-08 65.9 8.5 110 36-148 143-266 (513)
245 1sxj_D Activator 1 41 kDa subu 97.2 0.0037 1.2E-07 58.6 12.5 51 42-95 45-98 (353)
246 1ypw_A Transitional endoplasmi 97.2 7.3E-05 2.5E-09 78.9 0.6 125 53-199 506-630 (806)
247 1fx0_A ATP synthase alpha chai 97.2 0.00036 1.2E-08 69.0 5.4 111 36-149 144-268 (507)
248 2yv5_A YJEQ protein; hydrolase 97.1 0.00015 5E-09 67.6 2.5 60 55-115 162-226 (302)
249 3cf2_A TER ATPase, transitiona 97.1 0.00043 1.5E-08 72.6 6.2 125 53-199 506-630 (806)
250 3kta_A Chromosome segregation 97.1 0.00029 9.8E-09 59.9 4.0 28 55-83 24-51 (182)
251 4a8j_A Elongator complex prote 97.1 0.00012 4.2E-09 69.2 1.8 38 36-76 18-55 (361)
252 4eaq_A DTMP kinase, thymidylat 97.1 0.00053 1.8E-08 61.1 5.9 37 54-91 22-58 (229)
253 2oap_1 GSPE-2, type II secreti 97.1 0.00018 6.2E-09 71.9 3.0 39 55-94 257-295 (511)
254 1u0l_A Probable GTPase ENGC; p 97.1 0.00011 3.9E-09 68.3 1.2 62 55-116 166-232 (301)
255 3mfy_A V-type ATP synthase alp 97.1 0.0029 1E-07 63.1 11.1 109 36-149 208-337 (588)
256 3ney_A 55 kDa erythrocyte memb 97.1 0.00037 1.3E-08 60.8 4.0 28 56-83 17-44 (197)
257 2bbw_A Adenylate kinase 4, AK4 97.1 0.00038 1.3E-08 62.5 4.2 26 57-82 26-51 (246)
258 2qor_A Guanylate kinase; phosp 97.1 0.00031 1.1E-08 61.2 3.5 28 55-82 9-36 (204)
259 2qt1_A Nicotinamide riboside k 97.0 0.00032 1.1E-08 61.1 3.6 38 54-95 17-54 (207)
260 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.0005 1.7E-08 62.4 5.0 38 57-94 3-40 (260)
261 1sxj_B Activator 1 37 kDa subu 97.0 0.0048 1.6E-07 56.9 11.8 83 43-149 30-120 (323)
262 1np6_A Molybdopterin-guanine d 97.0 0.00079 2.7E-08 57.5 5.9 39 55-93 3-41 (174)
263 1tq4_A IIGP1, interferon-induc 97.0 9.9E-05 3.4E-09 71.8 0.2 29 60-88 71-99 (413)
264 2qen_A Walker-type ATPase; unk 97.0 0.0016 5.3E-08 60.8 8.4 97 43-149 21-141 (350)
265 1kht_A Adenylate kinase; phosp 97.0 0.00063 2.1E-08 57.9 5.0 28 58-85 3-30 (192)
266 3co5_A Putative two-component 97.0 0.00056 1.9E-08 56.1 4.4 33 58-94 27-59 (143)
267 2p67_A LAO/AO transport system 97.0 0.00066 2.3E-08 64.2 5.6 42 55-96 53-94 (341)
268 4dzz_A Plasmid partitioning pr 97.0 0.0026 9.1E-08 54.7 9.0 84 60-148 3-87 (206)
269 2plr_A DTMP kinase, probable t 97.0 0.00075 2.6E-08 58.5 5.5 36 57-93 3-38 (213)
270 4e22_A Cytidylate kinase; P-lo 97.0 0.00043 1.5E-08 62.6 4.0 27 56-82 25-51 (252)
271 1nks_A Adenylate kinase; therm 97.0 0.00071 2.4E-08 57.6 5.2 34 60-93 3-36 (194)
272 3u61_B DNA polymerase accessor 97.0 0.0056 1.9E-07 56.9 11.8 47 44-95 36-82 (324)
273 2www_A Methylmalonic aciduria 97.0 0.00079 2.7E-08 64.0 5.9 40 56-95 72-111 (349)
274 1xjc_A MOBB protein homolog; s 97.0 0.001 3.6E-08 56.4 5.9 37 59-95 5-41 (169)
275 2qag_B Septin-6, protein NEDD5 96.9 0.00035 1.2E-08 68.0 2.8 27 55-81 37-65 (427)
276 2ius_A DNA translocase FTSK; n 96.9 0.0086 2.9E-07 59.6 12.6 41 55-95 164-208 (512)
277 3cm0_A Adenylate kinase; ATP-b 96.9 0.00057 2E-08 58.1 3.7 27 56-82 2-28 (186)
278 1cke_A CK, MSSA, protein (cyti 96.9 0.00078 2.7E-08 59.2 4.4 25 58-82 5-29 (227)
279 1nn5_A Similar to deoxythymidy 96.8 0.0014 4.7E-08 57.0 5.7 37 56-92 7-43 (215)
280 3end_A Light-independent proto 96.8 0.0024 8.4E-08 59.0 7.7 62 35-96 14-79 (307)
281 1qhx_A CPT, protein (chloramph 96.8 0.00077 2.6E-08 56.9 3.8 25 58-82 3-27 (178)
282 3e1s_A Exodeoxyribonuclease V, 96.8 0.00031 1.1E-08 71.2 1.5 37 58-94 204-240 (574)
283 3pvs_A Replication-associated 96.8 0.0063 2.2E-07 59.7 10.6 69 59-149 51-119 (447)
284 1z6t_A APAF-1, apoptotic prote 96.8 0.0023 7.8E-08 64.7 7.7 102 43-146 133-246 (591)
285 3llm_A ATP-dependent RNA helic 96.8 0.0054 1.8E-07 54.4 9.3 92 55-148 73-188 (235)
286 3kb2_A SPBC2 prophage-derived 96.8 0.00092 3.1E-08 55.8 4.0 23 60-82 3-25 (173)
287 3t61_A Gluconokinase; PSI-biol 96.8 0.00093 3.2E-08 57.9 4.0 37 58-99 18-54 (202)
288 1gvn_B Zeta; postsegregational 96.7 0.0011 3.7E-08 61.2 4.6 35 57-94 32-66 (287)
289 1odf_A YGR205W, hypothetical 3 96.7 0.00096 3.3E-08 61.7 4.2 32 54-85 27-58 (290)
290 1qhl_A Protein (cell division 96.7 9.6E-05 3.3E-09 66.0 -2.6 31 59-89 28-58 (227)
291 2pbr_A DTMP kinase, thymidylat 96.7 0.0017 5.8E-08 55.3 5.5 34 60-93 2-35 (195)
292 1jr3_A DNA polymerase III subu 96.7 0.0058 2E-07 57.7 9.7 39 44-84 26-64 (373)
293 2wwf_A Thymidilate kinase, put 96.7 0.0019 6.5E-08 56.0 5.8 37 54-90 6-42 (212)
294 2qgz_A Helicase loader, putati 96.7 0.0017 6E-08 60.4 5.8 37 58-94 152-189 (308)
295 2dy1_A Elongation factor G; tr 96.7 0.0035 1.2E-07 64.7 8.6 90 55-146 6-109 (665)
296 1gtv_A TMK, thymidylate kinase 96.7 0.00061 2.1E-08 59.3 2.4 34 60-93 2-35 (214)
297 1y63_A LMAJ004144AAA protein; 96.7 0.0013 4.3E-08 56.3 4.3 27 55-81 7-33 (184)
298 2p5t_B PEZT; postsegregational 96.7 0.00069 2.4E-08 61.2 2.8 38 56-96 30-67 (253)
299 2z0h_A DTMP kinase, thymidylat 96.7 0.0019 6.7E-08 55.2 5.5 33 60-92 2-34 (197)
300 4ag6_A VIRB4 ATPase, type IV s 96.7 0.0021 7.3E-08 61.7 6.2 52 55-107 32-83 (392)
301 1qvr_A CLPB protein; coiled co 96.7 0.005 1.7E-07 65.4 9.6 84 59-149 589-673 (854)
302 2a5y_B CED-4; apoptosis; HET: 96.6 0.0059 2E-07 61.4 9.5 91 57-147 151-254 (549)
303 1ojl_A Transcriptional regulat 96.6 0.0044 1.5E-07 57.5 7.9 42 57-98 24-65 (304)
304 2c95_A Adenylate kinase 1; tra 96.6 0.0014 4.9E-08 56.0 4.2 26 57-82 8-33 (196)
305 3vr4_D V-type sodium ATPase su 96.6 0.0015 5E-08 63.9 4.5 55 36-93 132-190 (465)
306 3umf_A Adenylate kinase; rossm 96.6 0.0015 5.2E-08 57.8 4.1 40 38-82 14-53 (217)
307 3pfi_A Holliday junction ATP-d 96.6 0.013 4.4E-07 54.7 10.9 64 59-149 56-119 (338)
308 1ly1_A Polynucleotide kinase; 96.6 0.0013 4.3E-08 55.4 3.5 32 59-94 3-34 (181)
309 3iij_A Coilin-interacting nucl 96.6 0.0015 5.2E-08 55.3 4.0 27 56-82 9-35 (180)
310 3trf_A Shikimate kinase, SK; a 96.6 0.0016 5.3E-08 55.4 4.1 25 58-82 5-29 (185)
311 1a5t_A Delta prime, HOLB; zinc 96.6 0.022 7.5E-07 53.4 12.4 98 45-149 13-121 (334)
312 1in4_A RUVB, holliday junction 96.6 0.0013 4.6E-08 61.8 3.9 24 59-82 52-75 (334)
313 1tev_A UMP-CMP kinase; ploop, 96.6 0.0014 4.9E-08 55.8 3.8 25 58-82 3-27 (196)
314 3lw7_A Adenylate kinase relate 96.6 0.0012 4.1E-08 55.0 3.2 20 59-78 2-21 (179)
315 3nwj_A ATSK2; P loop, shikimat 96.5 0.0011 3.6E-08 60.1 2.8 28 55-82 42-72 (250)
316 3pxi_A Negative regulator of g 96.5 0.0048 1.7E-07 64.5 8.2 36 60-95 523-558 (758)
317 2ze6_A Isopentenyl transferase 96.5 0.0016 5.4E-08 58.9 3.9 23 60-82 3-25 (253)
318 1jjv_A Dephospho-COA kinase; P 96.5 0.0014 4.7E-08 56.8 3.4 21 60-80 4-24 (206)
319 2bwj_A Adenylate kinase 5; pho 96.5 0.0012 3.9E-08 56.7 2.8 27 56-82 10-36 (199)
320 3vr4_A V-type sodium ATPase ca 96.5 0.005 1.7E-07 61.6 7.5 53 36-93 213-265 (600)
321 2if2_A Dephospho-COA kinase; a 96.5 0.0015 5.2E-08 56.4 3.4 21 60-80 3-23 (204)
322 1wcv_1 SOJ, segregation protei 96.4 0.0091 3.1E-07 53.6 8.6 41 57-97 5-46 (257)
323 2v54_A DTMP kinase, thymidylat 96.4 0.0021 7.3E-08 55.3 4.1 27 56-82 2-28 (204)
324 1hqc_A RUVB; extended AAA-ATPa 96.4 0.014 4.8E-07 53.9 10.0 66 58-149 38-103 (324)
325 1a7j_A Phosphoribulokinase; tr 96.4 0.0015 5E-08 60.5 3.1 42 57-98 4-45 (290)
326 1zd8_A GTP:AMP phosphotransfer 96.4 0.0017 6E-08 57.3 3.5 29 54-82 3-31 (227)
327 2cdn_A Adenylate kinase; phosp 96.4 0.0024 8.2E-08 55.1 4.3 26 57-82 19-44 (201)
328 2axn_A 6-phosphofructo-2-kinas 96.4 0.024 8.2E-07 56.6 12.0 38 57-94 34-71 (520)
329 1aky_A Adenylate kinase; ATP:A 96.4 0.0024 8.3E-08 56.0 4.2 26 57-82 3-28 (220)
330 3uk6_A RUVB-like 2; hexameric 96.4 0.0029 1E-07 59.8 5.1 32 53-84 65-96 (368)
331 1via_A Shikimate kinase; struc 96.4 0.002 6.7E-08 54.4 3.4 23 60-82 6-28 (175)
332 2vli_A Antibiotic resistance p 96.4 0.0014 4.7E-08 55.5 2.4 26 57-82 4-29 (183)
333 1yrb_A ATP(GTP)binding protein 96.3 0.0041 1.4E-07 55.8 5.7 40 57-97 13-52 (262)
334 3iqw_A Tail-anchored protein t 96.3 0.018 6.2E-07 54.2 10.3 49 45-96 6-54 (334)
335 1pui_A ENGB, probable GTP-bind 96.3 0.00094 3.2E-08 57.8 1.3 28 55-82 23-50 (210)
336 2jaq_A Deoxyguanosine kinase; 96.3 0.0024 8.2E-08 54.8 3.9 23 60-82 2-24 (205)
337 4edh_A DTMP kinase, thymidylat 96.3 0.0041 1.4E-07 54.7 5.3 38 56-93 4-41 (213)
338 1w1w_A Structural maintenance 96.3 0.0023 7.8E-08 62.4 4.0 30 55-84 23-52 (430)
339 3fkq_A NTRC-like two-domain pr 96.3 0.03 1E-06 53.3 11.8 40 56-95 141-181 (373)
340 3gqb_B V-type ATP synthase bet 96.3 0.002 6.8E-08 63.0 3.5 46 36-84 128-173 (464)
341 1uj2_A Uridine-cytidine kinase 96.3 0.003 1E-07 56.8 4.3 37 59-95 23-64 (252)
342 3q9l_A Septum site-determining 96.3 0.025 8.6E-07 50.4 10.5 39 58-96 2-41 (260)
343 3k1j_A LON protease, ATP-depen 96.3 0.0021 7.2E-08 65.6 3.6 41 55-95 57-97 (604)
344 1q3t_A Cytidylate kinase; nucl 96.3 0.0032 1.1E-07 56.0 4.4 29 54-82 12-40 (236)
345 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0029 1E-07 52.3 3.9 23 60-82 25-47 (149)
346 2c61_A A-type ATP synthase non 96.3 0.0028 9.5E-08 62.2 4.3 55 36-93 133-191 (469)
347 2o5v_A DNA replication and rep 96.3 0.0026 9E-08 60.6 4.0 26 55-81 24-49 (359)
348 3p32_A Probable GTPase RV1496/ 96.3 0.0042 1.4E-07 59.0 5.5 40 57-96 78-117 (355)
349 1r6b_X CLPA protein; AAA+, N-t 96.3 0.022 7.4E-07 59.5 11.4 80 60-149 490-570 (758)
350 1zak_A Adenylate kinase; ATP:A 96.2 0.0028 9.4E-08 55.7 3.8 26 57-82 4-29 (222)
351 1qvr_A CLPB protein; coiled co 96.2 0.014 4.9E-07 61.9 10.0 77 60-150 193-277 (854)
352 2iut_A DNA translocase FTSK; n 96.2 0.012 4.2E-07 59.1 8.9 39 58-96 214-256 (574)
353 1nij_A Hypothetical protein YJ 96.2 0.0023 7.7E-08 59.9 3.4 24 59-82 5-28 (318)
354 2iyv_A Shikimate kinase, SK; t 96.2 0.0027 9.1E-08 53.9 3.5 24 59-82 3-26 (184)
355 3gqb_A V-type ATP synthase alp 96.2 0.0051 1.7E-07 61.3 5.9 54 35-93 201-254 (578)
356 3m6a_A ATP-dependent protease 96.2 0.0026 9E-08 64.0 3.9 27 57-83 107-133 (543)
357 3be4_A Adenylate kinase; malar 96.2 0.0032 1.1E-07 55.2 3.9 27 56-82 3-29 (217)
358 2fna_A Conserved hypothetical 96.2 0.024 8.2E-07 52.7 10.1 35 59-96 31-65 (357)
359 2bjv_A PSP operon transcriptio 96.1 0.0039 1.3E-07 56.3 4.4 40 58-97 29-68 (265)
360 3sr0_A Adenylate kinase; phosp 96.1 0.0035 1.2E-07 54.9 3.9 31 60-95 2-32 (206)
361 1ex7_A Guanylate kinase; subst 96.1 0.003 1E-07 54.4 3.4 24 59-82 2-25 (186)
362 3lv8_A DTMP kinase, thymidylat 96.1 0.0063 2.2E-07 54.4 5.6 40 53-92 22-62 (236)
363 2qnr_A Septin-2, protein NEDD5 96.1 0.0018 6E-08 60.2 2.0 27 61-87 21-48 (301)
364 1zuh_A Shikimate kinase; alpha 96.1 0.0039 1.3E-07 52.1 4.0 24 59-82 8-31 (168)
365 2gno_A DNA polymerase III, gam 96.1 0.025 8.7E-07 52.4 9.9 72 58-149 18-95 (305)
366 3fb4_A Adenylate kinase; psych 96.1 0.0037 1.3E-07 54.5 3.9 23 60-82 2-24 (216)
367 1ukz_A Uridylate kinase; trans 96.1 0.0034 1.2E-07 54.2 3.6 25 58-82 15-39 (203)
368 1qf9_A UMP/CMP kinase, protein 96.1 0.0037 1.3E-07 53.1 3.8 25 58-82 6-30 (194)
369 3r20_A Cytidylate kinase; stru 96.1 0.0037 1.3E-07 55.8 3.9 25 58-82 9-33 (233)
370 3tlx_A Adenylate kinase 2; str 96.0 0.0043 1.5E-07 55.6 4.1 27 56-82 27-53 (243)
371 1e6c_A Shikimate kinase; phosp 96.0 0.0038 1.3E-07 52.2 3.5 24 59-82 3-26 (173)
372 3v9p_A DTMP kinase, thymidylat 96.0 0.0052 1.8E-07 54.6 4.6 41 53-93 20-64 (227)
373 4tmk_A Protein (thymidylate ki 96.0 0.0079 2.7E-07 52.9 5.6 36 57-92 2-38 (213)
374 1oix_A RAS-related protein RAB 96.0 0.0039 1.3E-07 53.3 3.4 24 60-83 31-54 (191)
375 1vht_A Dephospho-COA kinase; s 96.0 0.0045 1.5E-07 54.1 3.7 24 57-80 3-26 (218)
376 1ofh_A ATP-dependent HSL prote 95.9 0.007 2.4E-07 55.4 5.2 34 59-95 51-84 (310)
377 1uf9_A TT1252 protein; P-loop, 95.9 0.0044 1.5E-07 53.2 3.6 24 58-81 8-31 (203)
378 3dl0_A Adenylate kinase; phosp 95.9 0.0043 1.5E-07 54.1 3.4 23 60-82 2-24 (216)
379 1u0j_A DNA replication protein 95.9 0.0076 2.6E-07 54.9 5.1 37 46-83 93-129 (267)
380 2f9l_A RAB11B, member RAS onco 95.9 0.0043 1.5E-07 53.3 3.3 22 60-81 7-28 (199)
381 2pt5_A Shikimate kinase, SK; a 95.9 0.0055 1.9E-07 50.9 3.9 23 60-82 2-24 (168)
382 1ofu_X SULA, hypothetical prot 95.8 0.17 5.8E-06 40.0 12.2 86 58-143 2-90 (119)
383 2r62_A Cell division protease 95.8 0.0029 1E-07 57.1 1.9 75 55-150 43-117 (268)
384 3ake_A Cytidylate kinase; CMP 95.8 0.0064 2.2E-07 52.3 3.9 23 60-82 4-26 (208)
385 1ak2_A Adenylate kinase isoenz 95.8 0.0073 2.5E-07 53.5 4.4 26 57-82 15-40 (233)
386 3ld9_A DTMP kinase, thymidylat 95.8 0.0078 2.7E-07 53.4 4.5 40 56-95 19-59 (223)
387 3d3q_A TRNA delta(2)-isopenten 95.8 0.0089 3E-07 56.4 5.1 24 59-82 8-31 (340)
388 3qks_A DNA double-strand break 95.7 0.0068 2.3E-07 52.8 3.9 24 59-82 24-47 (203)
389 1ihu_A Arsenical pump-driving 95.7 0.0048 1.7E-07 62.6 3.3 91 6-97 254-366 (589)
390 2xb4_A Adenylate kinase; ATP-b 95.7 0.0068 2.3E-07 53.4 3.9 23 60-82 2-24 (223)
391 2qmh_A HPR kinase/phosphorylas 95.7 0.0049 1.7E-07 53.6 2.8 25 57-81 33-57 (205)
392 1cp2_A CP2, nitrogenase iron p 95.7 0.0096 3.3E-07 53.6 4.9 38 60-97 3-40 (269)
393 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0073 2.5E-07 57.2 4.0 28 56-83 20-49 (359)
394 1r6b_X CLPA protein; AAA+, N-t 95.6 0.065 2.2E-06 55.9 11.6 80 57-150 206-292 (758)
395 1ni3_A YCHF GTPase, YCHF GTP-b 95.6 0.0077 2.6E-07 58.0 4.1 28 53-80 15-42 (392)
396 2c9o_A RUVB-like 1; hexameric 95.6 0.0086 2.9E-07 58.8 4.5 40 54-94 59-98 (456)
397 2wsm_A Hydrogenase expression/ 95.6 0.013 4.5E-07 50.9 5.3 37 59-96 31-67 (221)
398 1e4v_A Adenylate kinase; trans 95.6 0.008 2.7E-07 52.4 3.8 23 60-82 2-24 (214)
399 3hws_A ATP-dependent CLP prote 95.6 0.011 3.7E-07 56.1 4.9 35 57-94 50-84 (363)
400 1bif_A 6-phosphofructo-2-kinas 95.6 0.1 3.5E-06 51.2 12.2 35 58-92 39-73 (469)
401 4b3f_X DNA-binding protein smu 95.5 0.0087 3E-07 61.5 4.5 39 57-95 204-242 (646)
402 4dcu_A GTP-binding protein ENG 95.5 0.022 7.7E-07 55.8 7.2 21 60-80 25-45 (456)
403 2gj8_A MNME, tRNA modification 95.5 0.0063 2.2E-07 51.0 2.8 25 57-81 3-27 (172)
404 4hlc_A DTMP kinase, thymidylat 95.5 0.014 4.9E-07 50.9 5.1 34 58-92 2-35 (205)
405 2grj_A Dephospho-COA kinase; T 95.5 0.0096 3.3E-07 51.4 3.9 26 57-82 11-36 (192)
406 3ea0_A ATPase, para family; al 95.5 0.016 5.6E-07 51.2 5.5 41 57-97 3-45 (245)
407 1um8_A ATP-dependent CLP prote 95.5 0.012 4.1E-07 56.0 4.9 35 57-94 71-105 (376)
408 3igf_A ALL4481 protein; two-do 95.5 0.044 1.5E-06 52.3 8.8 36 59-94 3-38 (374)
409 1vt4_I APAF-1 related killer D 95.5 0.05 1.7E-06 58.6 9.9 42 58-99 150-194 (1221)
410 3bfv_A CAPA1, CAPB2, membrane 95.4 0.021 7.1E-07 52.0 6.2 41 57-97 81-122 (271)
411 2afh_E Nitrogenase iron protei 95.4 0.014 4.7E-07 53.4 5.0 39 59-97 3-41 (289)
412 3upu_A ATP-dependent DNA helic 95.4 0.0087 3E-07 58.8 3.8 35 60-94 47-82 (459)
413 3a8t_A Adenylate isopentenyltr 95.4 0.0088 3E-07 56.3 3.6 27 56-82 38-64 (339)
414 3fwy_A Light-independent proto 95.4 0.016 5.5E-07 54.0 5.4 42 55-96 45-86 (314)
415 3cio_A ETK, tyrosine-protein k 95.4 0.02 6.9E-07 52.9 6.0 41 57-97 103-144 (299)
416 3io3_A DEHA2D07832P; chaperone 95.4 0.025 8.6E-07 53.5 6.7 48 45-95 8-57 (348)
417 2r2a_A Uncharacterized protein 95.3 0.015 5E-07 50.6 4.5 123 59-198 6-136 (199)
418 3kjh_A CO dehydrogenase/acetyl 95.3 0.012 4.1E-07 52.0 4.0 37 61-97 3-39 (254)
419 3qkt_A DNA double-strand break 95.2 0.012 3.9E-07 55.5 3.9 24 59-82 24-47 (339)
420 2wji_A Ferrous iron transport 95.2 0.011 3.9E-07 48.9 3.4 22 60-81 5-26 (165)
421 1x6v_B Bifunctional 3'-phospho 95.2 0.018 6.3E-07 58.6 5.5 38 57-94 51-88 (630)
422 3tqf_A HPR(Ser) kinase; transf 95.2 0.011 3.9E-07 50.2 3.3 24 57-80 15-38 (181)
423 1e9r_A Conjugal transfer prote 95.2 0.018 6.1E-07 56.0 5.2 38 59-96 54-91 (437)
424 1g3q_A MIND ATPase, cell divis 95.2 0.024 8.3E-07 49.8 5.7 38 59-96 3-41 (237)
425 3hjn_A DTMP kinase, thymidylat 95.2 0.023 7.8E-07 49.2 5.3 34 60-93 2-35 (197)
426 1ltq_A Polynucleotide kinase; 95.2 0.011 3.8E-07 54.2 3.5 23 59-81 3-25 (301)
427 2f6r_A COA synthase, bifunctio 95.2 0.011 3.7E-07 54.2 3.4 22 58-79 75-96 (281)
428 2wjg_A FEOB, ferrous iron tran 95.2 0.013 4.4E-07 49.3 3.6 21 60-80 9-29 (188)
429 3zvl_A Bifunctional polynucleo 95.1 0.01 3.5E-07 57.6 3.3 34 57-95 257-290 (416)
430 3crm_A TRNA delta(2)-isopenten 95.1 0.011 3.9E-07 55.2 3.4 24 59-82 6-29 (323)
431 2xau_A PRE-mRNA-splicing facto 95.1 0.048 1.6E-06 57.2 8.5 92 56-147 107-219 (773)
432 3sfz_A APAF-1, apoptotic pepti 95.1 0.031 1.1E-06 60.9 7.3 102 43-146 133-246 (1249)
433 2oze_A ORF delta'; para, walke 95.0 0.021 7.2E-07 52.3 5.0 50 44-97 24-76 (298)
434 3foz_A TRNA delta(2)-isopenten 95.0 0.014 4.6E-07 54.4 3.6 25 58-82 10-34 (316)
435 3exa_A TRNA delta(2)-isopenten 95.0 0.014 4.8E-07 54.4 3.6 25 58-82 3-27 (322)
436 3k9g_A PF-32 protein; ssgcid, 95.0 0.02 6.9E-07 51.5 4.7 40 57-97 26-66 (267)
437 3la6_A Tyrosine-protein kinase 95.0 0.031 1.1E-06 51.3 5.9 41 57-97 91-132 (286)
438 2ocp_A DGK, deoxyguanosine kin 95.0 0.013 4.5E-07 52.0 3.3 26 57-82 1-26 (241)
439 3tmk_A Thymidylate kinase; pho 95.0 0.018 6.3E-07 50.6 4.2 29 56-84 3-31 (216)
440 3zq6_A Putative arsenical pump 94.9 0.029 1E-06 52.4 5.7 38 59-96 15-52 (324)
441 2zej_A Dardarin, leucine-rich 94.9 0.012 4E-07 49.7 2.6 22 60-81 4-25 (184)
442 1m8p_A Sulfate adenylyltransfe 94.9 0.027 9.1E-07 57.0 5.5 39 57-95 395-434 (573)
443 1udx_A The GTP-binding protein 94.8 0.0095 3.3E-07 57.8 2.1 27 55-81 154-180 (416)
444 2hf9_A Probable hydrogenase ni 94.8 0.03 1E-06 48.8 5.0 34 59-93 39-72 (226)
445 2gks_A Bifunctional SAT/APS ki 94.7 0.03 1E-06 56.3 5.5 38 58-95 372-409 (546)
446 2chq_A Replication factor C sm 94.7 0.029 1E-06 51.3 5.0 34 61-94 41-76 (319)
447 1iqp_A RFCS; clamp loader, ext 94.7 0.02 6.9E-07 52.7 3.9 37 44-83 35-71 (327)
448 1ega_A Protein (GTP-binding pr 94.6 0.012 4.2E-07 54.4 2.3 24 58-81 8-31 (301)
449 1hyq_A MIND, cell division inh 94.6 0.041 1.4E-06 49.2 5.7 38 59-96 3-41 (263)
450 1z2a_A RAS-related protein RAB 94.6 0.02 6.9E-07 46.8 3.3 22 60-81 7-28 (168)
451 2dyk_A GTP-binding protein; GT 94.6 0.021 7.2E-07 46.4 3.3 22 60-81 3-24 (161)
452 1kao_A RAP2A; GTP-binding prot 94.5 0.021 7.3E-07 46.4 3.3 22 60-81 5-26 (167)
453 3ug7_A Arsenical pump-driving 94.5 0.044 1.5E-06 51.8 5.8 41 56-96 24-64 (349)
454 2h92_A Cytidylate kinase; ross 94.5 0.021 7.2E-07 49.7 3.3 25 58-82 3-27 (219)
455 1ihu_A Arsenical pump-driving 94.5 0.045 1.6E-06 55.4 6.3 40 57-96 7-46 (589)
456 2ce2_X GTPase HRAS; signaling 94.5 0.022 7.4E-07 46.3 3.2 22 60-81 5-26 (166)
457 2qag_C Septin-7; cell cycle, c 94.4 0.014 4.9E-07 56.6 2.3 23 61-83 34-56 (418)
458 1u8z_A RAS-related protein RAL 94.4 0.024 8.2E-07 46.2 3.3 22 60-81 6-27 (168)
459 1byi_A Dethiobiotin synthase; 94.4 0.043 1.5E-06 47.8 5.1 35 60-94 3-38 (224)
460 2ged_A SR-beta, signal recogni 94.4 0.024 8.3E-07 47.8 3.3 25 57-81 47-71 (193)
461 1ek0_A Protein (GTP-binding pr 94.3 0.026 8.9E-07 46.1 3.3 21 61-81 6-26 (170)
462 3eph_A TRNA isopentenyltransfe 94.3 0.026 9.1E-07 54.3 3.8 24 59-82 3-26 (409)
463 3cwq_A Para family chromosome 94.3 0.047 1.6E-06 47.4 5.1 37 60-97 2-39 (209)
464 2woj_A ATPase GET3; tail-ancho 94.3 0.051 1.7E-06 51.5 5.7 51 44-97 7-59 (354)
465 2r44_A Uncharacterized protein 94.3 0.017 5.9E-07 53.7 2.4 34 58-94 46-79 (331)
466 3auy_A DNA double-strand break 94.3 0.027 9.4E-07 53.6 3.9 22 59-80 26-47 (371)
467 1g16_A RAS-related protein SEC 94.3 0.026 8.8E-07 46.3 3.2 20 61-80 6-25 (170)
468 1ky3_A GTP-binding protein YPT 94.3 0.027 9.1E-07 46.7 3.3 22 60-81 10-31 (182)
469 1z0j_A RAB-22, RAS-related pro 94.3 0.027 9.2E-07 46.1 3.3 22 60-81 8-29 (170)
470 1z08_A RAS-related protein RAB 94.2 0.027 9.3E-07 46.2 3.3 22 60-81 8-29 (170)
471 1wms_A RAB-9, RAB9, RAS-relate 94.2 0.027 9.2E-07 46.6 3.3 22 60-81 9-30 (177)
472 2ph1_A Nucleotide-binding prot 94.2 0.048 1.6E-06 49.0 5.2 41 58-98 18-59 (262)
473 1c1y_A RAS-related protein RAP 94.2 0.028 9.7E-07 45.8 3.3 21 60-80 5-25 (167)
474 3gmt_A Adenylate kinase; ssgci 94.2 0.031 1E-06 49.7 3.6 23 60-82 10-32 (230)
475 2nzj_A GTP-binding protein REM 94.1 0.027 9.3E-07 46.4 3.1 21 60-80 6-26 (175)
476 1p5z_B DCK, deoxycytidine kina 94.1 0.014 4.9E-07 52.5 1.5 27 56-82 22-48 (263)
477 2erx_A GTP-binding protein DI- 94.1 0.028 9.6E-07 46.0 3.1 21 60-80 5-25 (172)
478 1r2q_A RAS-related protein RAB 94.1 0.031 1.1E-06 45.7 3.3 22 60-81 8-29 (170)
479 3q85_A GTP-binding protein REM 94.1 0.029 1E-06 46.0 3.2 20 61-80 5-24 (169)
480 1r8s_A ADP-ribosylation factor 94.0 0.034 1.2E-06 45.3 3.5 21 61-81 3-23 (164)
481 1g41_A Heat shock protein HSLU 94.0 0.028 9.7E-07 54.9 3.3 28 55-83 48-75 (444)
482 2fn4_A P23, RAS-related protei 94.0 0.032 1.1E-06 46.2 3.2 22 60-81 11-32 (181)
483 1upt_A ARL1, ADP-ribosylation 93.9 0.034 1.2E-06 45.6 3.3 23 58-80 7-29 (171)
484 3pxg_A Negative regulator of g 93.9 0.035 1.2E-06 54.7 3.9 27 58-84 201-227 (468)
485 3bc1_A RAS-related protein RAB 93.9 0.035 1.2E-06 46.5 3.3 22 60-81 13-34 (195)
486 2y8e_A RAB-protein 6, GH09086P 93.9 0.033 1.1E-06 46.0 3.2 21 60-80 16-36 (179)
487 1g8f_A Sulfate adenylyltransfe 93.9 0.044 1.5E-06 54.5 4.5 40 57-96 394-435 (511)
488 2woo_A ATPase GET3; tail-ancho 93.9 0.077 2.6E-06 49.6 6.0 40 58-97 19-58 (329)
489 2lkc_A Translation initiation 93.9 0.043 1.5E-06 45.4 3.9 24 57-80 7-30 (178)
490 3con_A GTPase NRAS; structural 93.9 0.035 1.2E-06 46.7 3.3 22 60-81 23-44 (190)
491 3k53_A Ferrous iron transport 93.9 0.026 8.8E-07 51.1 2.6 22 60-81 5-26 (271)
492 1nrj_B SR-beta, signal recogni 93.8 0.035 1.2E-06 47.9 3.3 23 60-82 14-36 (218)
493 3q72_A GTP-binding protein RAD 93.8 0.031 1.1E-06 45.7 2.9 19 61-79 5-23 (166)
494 2gk6_A Regulator of nonsense t 93.8 0.063 2.2E-06 54.8 5.7 38 58-95 195-233 (624)
495 1z0f_A RAB14, member RAS oncog 93.8 0.037 1.3E-06 45.7 3.3 22 60-81 17-38 (179)
496 3clv_A RAB5 protein, putative; 93.8 0.036 1.2E-06 46.7 3.3 22 60-81 9-30 (208)
497 3lxx_A GTPase IMAP family memb 93.8 0.029 9.9E-07 49.6 2.8 22 60-81 31-52 (239)
498 4dsu_A GTPase KRAS, isoform 2B 93.8 0.037 1.3E-06 46.3 3.3 22 60-81 6-27 (189)
499 2a9k_A RAS-related protein RAL 93.7 0.038 1.3E-06 46.0 3.3 22 60-81 20-41 (187)
500 2oil_A CATX-8, RAS-related pro 93.7 0.038 1.3E-06 46.6 3.3 22 60-81 27-48 (193)
No 1
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=100.00 E-value=1.4e-61 Score=538.39 Aligned_cols=323 Identities=58% Similarity=0.915 Sum_probs=301.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|.++|+.|+++|+++||++++|+||+. ....++.||||+..||.+||+||+|+|++++|+||.+||||||++|+++.+
T Consensus 1721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~d~~l~~gg~p~g~~~e~~~~~~~g~~~~~~~~~~~~ 1799 (2050)
T 3cmu_A 1721 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1799 (2050)
T ss_dssp THHHHHHHHHHHHHHHHCTTSEEEGGGC-TTTCCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcceEECCCC-cccCCCcccCCcHHHHHhhCCCCCcCCcEEEEECCCCcCHHHHHHHHHHHH
Confidence 6899999999999999999999999985 467899999999999999999999999999999999999999999999999
Q ss_pred hhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 83 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 83 ~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
++.||.|.|||.|+.+++.+++++|++.+++++.+|++.++.+++++.+++++.++++||||++++.|+.++++++|+.+
T Consensus 1800 ~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~p~~~~~~~~~~~~ 1879 (2050)
T 3cmu_A 1800 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1879 (2050)
T ss_dssp HTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHC-------
T ss_pred hhcCCEEEEEcCccccCHHHHHHcCCCHHHeEEecCCcHHHHHHHHHHHHhcCCCcEEEEcchhhcCcHHHhcCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccE
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~ 242 (366)
.+.|||.|+++||+|...+.+.+|++||+||++.+++. +|++| ++++||++++||+++|+.++|...++++++..|++
T Consensus 1880 ~~~~~r~~~~~~r~~~~~~~~~~~~~~~~~q~r~~~~~-~~~~~-~~~~gg~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 1957 (2050)
T 3cmu_A 1880 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 1957 (2050)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTCEEEEEECCC---------CC-CCCSSHHHHHHHEEEEEEEEEEEEEEETTEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhhhccCceEEEEhhHhHHHhcc-ccCCC-CCcCCcchhheeeeeeeeeeeecccccCCeeeeeE
Confidence 99999999999999999999999999999999999987 48887 89999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 017792 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 321 (366)
Q Consensus 243 ~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~ 321 (366)
++++|+||+++||++.++|+|.|+.||++.+++++++.+.++|+|+|+||+|+++++ ||+++++.||++||+++++|+.
T Consensus 1958 ~~~~~~k~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2037 (2050)
T 3cmu_A 1958 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 2037 (2050)
T ss_dssp EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEEEEecCCCCCcceEEEEEEecCCcCccchHHHHHHhcCcEEeeeeEEEeCCeeccccHHHHHHHHHHCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhc
Q 017792 322 KLREKLV 328 (366)
Q Consensus 322 ~~~~~~~ 328 (366)
++++++.
T Consensus 2038 ~~~~~~~ 2044 (2050)
T 3cmu_A 2038 KVRELLL 2044 (2050)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9999864
No 2
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-59 Score=452.08 Aligned_cols=326 Identities=52% Similarity=0.848 Sum_probs=303.1
Q ss_pred chHHHHHHHHHHHHHHhcCCCceEeccCCCCCCC-CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRH-VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
.+|.++|+.|+++|++.||++++|++++. .... ..++|||++.||++||.||+|+|++++|+||||||||||+++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 5 KQKKSVLEKALKRIEENFGKGSIMILGDE-TQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSSCCTTCC-SCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCCceechhc-cccCCCceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999999999999985 3344 899999999999999889999999999999999999999999999
Q ss_pred HHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccch
Q 017792 81 EAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGD 160 (366)
Q Consensus 81 ~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~ 160 (366)
.+++.++.|+|+++|+.+++.+++++|++++++.+..+.+.++++..+..+++...+++++|||++.+++..++++.+|+
T Consensus 84 ~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~ 163 (356)
T 3hr8_A 84 EAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGD 163 (356)
T ss_dssp HHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCS
T ss_pred HHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchh
Confidence 99998999999999999999999999999999999999999999999998888888999999999999976788888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccc
Q 017792 161 AHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240 (366)
Q Consensus 161 ~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g 240 (366)
.+++.++|.+++.|+.|...+++++++||++||++.+++. +|++| .+++||++|+|++|+||.|++...++++++..|
T Consensus 164 ~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~-~fg~p-~~~~GG~~l~h~~~~rl~l~k~~~~k~g~~~~g 241 (356)
T 3hr8_A 164 MQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGV-MFGSP-ETTTGGLALKFYATMRMEVRRGEPIKEGKDVIG 241 (356)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSS-SSCSC-SSCTHHHHHHHHCSEEEEEEEEEEEEETTEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccc-ccCCc-ccCCCcchhhhhCcEEEEEEeccccccCCcccc
Confidence 8888899999999999999999999999999999888775 37666 688999999999999999999888888887778
Q ss_pred cEEEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEe-----cCccc-ccHHHHHHHHhhCHH
Q 017792 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTY-----NDRNF-RGKEAFKQFLVENES 314 (366)
Q Consensus 241 ~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~-----~~~~~-~~~~~~~~~l~~~~~ 314 (366)
+.+.++++|||++||++.+.|+|.|+.||++.+++++++.+.++|.++|+||+| +++++ ||++.++.||++||+
T Consensus 242 ~~~~vkvvKnr~~~~~~~~~f~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~w~~~~~~~~~~~~~~~g~~~~~~~l~~~~~ 321 (356)
T 3hr8_A 242 NVISVKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVNEGIVDRKGSWYYYTTLKGEEVSLGQGSSNAVQFLKDNPE 321 (356)
T ss_dssp EEEEEEEEEESSSCCCCEEEEEEETTTBSCHHHHHHHHHHHTTSSEEETTEEEEECTTSCEEEEEEHHHHHHHHHHHCHH
T ss_pred cEEEEEEEeCCCCCCCceEEEEEeeCCCcChhccHHHHHHHcChhhccCcEEEEEccCCCceeeccCHHHHHHHHHHCHH
Confidence 888999999999999999999999999999999999999999999999999999 88888 999999999999999
Q ss_pred HHHHHHHHHHHHhccC
Q 017792 315 VREELVIKLREKLVVD 330 (366)
Q Consensus 315 ~~~~l~~~~~~~~~~~ 330 (366)
++++|+.++++++...
T Consensus 322 ~~~~~~~~~~~~~~~~ 337 (356)
T 3hr8_A 322 IAGEIERRIREKYGLL 337 (356)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999998653
No 3
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=100.00 E-value=3.5e-59 Score=515.06 Aligned_cols=323 Identities=58% Similarity=0.915 Sum_probs=299.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|.++|..|+++|+|.||+++||++++. .....+.||||++.||.+||.||+|+|++++|+||+|||||||++++++.+
T Consensus 1377 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~tG~~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~ 1455 (1706)
T 3cmw_A 1377 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1455 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGSEEGGGC-GGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCccEEECCCC-CCCcCceecCCCHHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5788999999999999999999999985 356789999999999999997899999999999999999999999999999
Q ss_pred hhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 83 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 83 ~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
++.|+.|+||+.|+.+++.+++++|++++++++.+|++.++.++.+..+++++.+++|||||++++.|..++++++|+.+
T Consensus 1456 ~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~ 1535 (1706)
T 3cmw_A 1456 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1535 (1706)
T ss_dssp HHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------
T ss_pred HhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccE
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~ 242 (366)
.+.+||.|+++|++|...+++.+|++|||||.+.+++. +|++| ++++||++++|||++|+.++|...++++++..|++
T Consensus 1536 ~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~~~-~~~~~-~~~~~g~al~~~~~~r~~~~~~~~~~~~~~~~~~~ 1613 (1706)
T 3cmw_A 1536 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 1613 (1706)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC---------CC-CCBSSCSHHHHHEEEEEEEEEEEEEEETTEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCcEEEEeeccccccce-ecCCC-ccccCcceeeeeeeeeeeeeeccccccCCeeEeeE
Confidence 99999999999999999999999999999999999987 47777 89999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 017792 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 321 (366)
Q Consensus 243 ~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~ 321 (366)
++++|+||+++|||+.++|+|.|+.||++.+++++++.+.++|.|+|+||+|+++++ ||+++++.||++||+++++|+.
T Consensus 1614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1693 (1706)
T 3cmw_A 1614 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 1693 (1706)
T ss_dssp EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSEEEETTEEEETTEEEEESHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEEEecccCCCCcceEEEEEEecCCcCccchHHHHHHhcCcEEEeeeeEEeCCeeccccHHHHHHHHHHCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhc
Q 017792 322 KLREKLV 328 (366)
Q Consensus 322 ~~~~~~~ 328 (366)
++++++.
T Consensus 1694 ~~~~~~~ 1700 (1706)
T 3cmw_A 1694 KVRELLL 1700 (1706)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9999864
No 4
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=100.00 E-value=1.7e-53 Score=411.71 Aligned_cols=325 Identities=50% Similarity=0.847 Sum_probs=275.0
Q ss_pred chHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.+|.++|+.++++|++.||++++|++++. ......++|||++.||.+|++||+|+|++++|+|+||+||||||++++..
T Consensus 19 ~~~~~~l~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 19 KERSKAIETAMSQIEKAFGKGSIMKLGAE-SKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTSSCCTTSC-CCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcceecccc-ccccCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 36889999999999999999999999974 45678999999999999998789999999999999999999999999999
Q ss_pred HhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchh
Q 017792 82 AQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 82 ~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
++..++.|+|++.|+.+++.+++++|++++++.+.++.+.+++++.+..+++...+++|||||++.+.+..++++.+++.
T Consensus 98 ~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~ 177 (366)
T 1xp8_A 98 AQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDS 177 (366)
T ss_dssp HHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC-------
T ss_pred HHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccc
Confidence 98888899999999999988899999999999999999999999999988888889999999999998656665544443
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece-eecCccccc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL-VKKGEETIG 240 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~-~~~~~~~~g 240 (366)
+.+.++|.+.+.+++|...+++++++||++||.+..++. .|++| ..+.||.+|+|+||.|+.|++... ++.+++..|
T Consensus 178 ~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~-~fg~p-~~~~gg~al~~~a~~rl~L~r~~~~~k~~~~~~g 255 (366)
T 1xp8_A 178 LPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGV-MYGNP-ETTTGGRALKFYASVRLDVRKIGQPTKVGNDAVA 255 (366)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-----------------CHHHHHHHCSEEEEEEEESCCC------CE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCc-ccCCc-cccCCcchhhheeeEEEEEEecchhcccCccccC
Confidence 333566788899999999999999999999999987764 25555 678899999999999999999876 666655567
Q ss_pred cEEEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHH
Q 017792 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREEL 319 (366)
Q Consensus 241 ~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l 319 (366)
+.+.++++|||++||+..+.|+|.|+.|+.+.+++++++.+.++|.++|+||+|.++++ ||++.+++||++||+++++|
T Consensus 256 ~~~~v~v~Knr~~p~~~~~~f~i~~~~Gi~~~~~~l~~~~~~~~~~k~g~w~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 335 (366)
T 1xp8_A 256 NTVKIKTVKNKVAAPFKEVELALVYGKGFDQLSDLVGLAADMDIIKKAGSFYSYGDERIGQGKEKTIAYIAERPEMEQEI 335 (366)
T ss_dssp EEEEEEEEEESSSCCCCEEEEEEETTTEECHHHHHHHHHHHTTSSEEETTEEESSSSEEEESHHHHHHHHTTCHHHHHHH
T ss_pred CEEEEEEEcCCCCCCCceEEEEEEeCCCcccchhHHHHHHHhCeeeccCceeeECCeEecchHHHHHHHHHhCHHHHHHH
Confidence 77789999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHhcc
Q 017792 320 VIKLREKLVV 329 (366)
Q Consensus 320 ~~~~~~~~~~ 329 (366)
+.++++++..
T Consensus 336 ~~~~~~~~~~ 345 (366)
T 1xp8_A 336 RDRVMAAIRA 345 (366)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhcC
Confidence 9999999764
No 5
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=100.00 E-value=2e-53 Score=409.88 Aligned_cols=323 Identities=58% Similarity=0.915 Sum_probs=279.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|.++|+.++++|++.||++++|.+++. ......++|||++.||.+|+.||+|+|++++|+|+||+||||||++++..+
T Consensus 9 ~~~~~l~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 9 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp -CHHHHHHHHHHHHHHHCTTSSCCTTCC-CBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCceEcccc-ccccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999999984 556789999999999999976899999999999999999999999999999
Q ss_pred hhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 83 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 83 ~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
+..++.|+|+++|+++++.+++++|++++++.+.++.+.+++++.+..+++...++++|||+++.+.+..++++.+++..
T Consensus 88 ~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~ 167 (356)
T 1u94_A 88 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 167 (356)
T ss_dssp HHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC-----
T ss_pred HHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccch
Confidence 98888999999999999888899999999999999999999999888888778899999999999986555555444433
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccE
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~ 242 (366)
.+.++|.+.+.+++|...+++++++||++||.++.++. +|++| ..+.||++|+|+||.|+.+++.+.++.+++..+.+
T Consensus 168 ~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~-~fg~~-~~~~gG~~l~~~advrl~l~r~~~~k~g~~~~g~~ 245 (356)
T 1u94_A 168 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 245 (356)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----------------CTTCSHHHHHCSEEEEEEEEEEEESSSSEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCc-ccCCC-cccCCCcceeeeccEEEEEEEeeeeccCccccCcE
Confidence 33567788899999999999999999999999988765 25555 67889999999999999999998888776666777
Q ss_pred EEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 017792 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 321 (366)
Q Consensus 243 ~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~ 321 (366)
+.++|+|||.+||+..+.|++.++.||.+.+++++++.+.+++.++|+||+|.++++ |+++.++.||++||+++++|+.
T Consensus 246 ~~~~i~K~r~~p~~~~~~f~i~~~~Gi~~~~~~l~~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~i~~ 325 (356)
T 1u94_A 246 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 325 (356)
T ss_dssp EEEEEEEESSBCSCCEEEEEEETTTEECHHHHHHHHHHHTTSEECCTTCEEETTEEEESSHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEEECCCccCCCCCcEEEEEEcCCCcCcCcchHHHHHHhchhcCcceeEeeCCccHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhc
Q 017792 322 KLREKLV 328 (366)
Q Consensus 322 ~~~~~~~ 328 (366)
+++++++
T Consensus 326 ~~~~~~~ 332 (356)
T 1u94_A 326 KVRELLL 332 (356)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 9999985
No 6
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=100.00 E-value=6.8e-53 Score=405.85 Aligned_cols=324 Identities=54% Similarity=0.935 Sum_probs=284.3
Q ss_pred chHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.+|.++|+.|+++|++.||++++|.+++. ......++|||++.||.+|+.||+++|++++|+|+||+|||||+++++..
T Consensus 6 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 6 PDREKALELAMAQIDKNFGKGSVMRLGEE-VRQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTSSCCTTCC-CCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCceecccc-ccccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999999984 55678999999999999998789999999999999999999999999999
Q ss_pred HhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchh
Q 017792 82 AQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 82 ~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
+++.++.|+|++.|+.+++.+++++|++++++.+.++.+.++++..+..++....++++||||++.+.+..++++.+|+.
T Consensus 85 ~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 85 AQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp HHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred HHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 99889999999999999988899999999999999999999999998888888889999999999998655666555544
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcccccc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGS 241 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~ 241 (366)
+.+.++|.+.+.+++|...++++|++||++||.++.++. .|++| ..+.||++|+|+||.|+.+++.+.++.+++..|.
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~-~~~~p-~~~~gg~~l~~~ad~~l~lrr~~~~k~g~~~~g~ 242 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGV-MFGSP-ETTTGGKALKFYASVRLDVRRIETLKDGTDAVGN 242 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------------CCSSHHHHHHHCSEEEEEEEEEEECSSSSCCEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCc-ccCCC-cccCCchHhhhccceEEEEEEeeeeecCccccCC
Confidence 333566788899999998889999999999999987664 25555 6788999999999999999999888877766677
Q ss_pred EEEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHH
Q 017792 242 QIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELV 320 (366)
Q Consensus 242 ~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~ 320 (366)
++.++++|||.+||+..+.|++.++.||.+.+++++++.+.+++.++|+||+|.++++ |+++.++.||++||+++++|+
T Consensus 243 ~~~~~i~K~~~~p~~~~~~fdi~~~~Gi~~~~~~l~~g~~~~~~~~~g~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~i~ 322 (349)
T 2zr9_A 243 RTRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGKENARKFLLENTDVANEIE 322 (349)
T ss_dssp EEEEEEEEESSSCCCCEEEEEEETTSCBCHHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHHHCHHHHHHHH
T ss_pred EEEEEeCCCccCCCCceEEEEEEeCCCcCccccHHHHHHhhchhcCcceEEEEcCccHHhHHHHHHHHHhhCHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHhc
Q 017792 321 IKLREKLV 328 (366)
Q Consensus 321 ~~~~~~~~ 328 (366)
.++++++.
T Consensus 323 ~~~~~~~~ 330 (349)
T 2zr9_A 323 KKIKEKLG 330 (349)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHcC
Confidence 99999864
No 7
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=100.00 E-value=6.8e-50 Score=444.86 Aligned_cols=324 Identities=57% Similarity=0.912 Sum_probs=301.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|.++|+.|++++++.||++++|++++. .....+.+|||++.||.+||+||+++|+.++|+||||+|||||+.+++..+
T Consensus 1373 ~~~~~~~~~~~~~~~~~~~~si~~~~~~-~~~~~~~isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1373 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp THHHHHHHHHHHHHHHHCTTSEEEGGGC-TTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCCcceeecccc-cccccccccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999999985 445688999999999999998999999999999999999999999999999
Q ss_pred hhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 83 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 83 ~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
+..|+.|+|++.++.+.+.+++.+|++++++.+.++.+.++++..+..+++...++++|||++.++.|..+..+++++..
T Consensus 1452 ~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~ 1531 (2050)
T 3cmu_A 1452 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1531 (2050)
T ss_dssp HTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCC
T ss_pred HHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccc
Confidence 99999999999999999988999999999999999999999999999999889999999999999997655555555544
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccE
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~ 242 (366)
.+.++|.+++.|++|...+.+++++||++|+.+..++. .|++| .+++||+++.|++++|+.++|...++++++..|++
T Consensus 1532 ~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~~~~~g~-~fg~~-~~t~gg~al~~~~s~rl~~~~~~~~k~~~~~~g~~ 1609 (2050)
T 3cmu_A 1532 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 1609 (2050)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTCEEEEEECEEECTTC-CSSCC-EEESSHHHHHHHEEEEEEEEEEEEEEETTEEEEEE
T ss_pred cchHHHHHHHHHHHHHHHHHhCCcEEEEEccccccchh-hcCCC-cccCCCceeeeeeeEEEEeecccccccccccccce
Confidence 44578889999999999999999999999999999886 37777 88999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 017792 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 321 (366)
Q Consensus 243 ~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~ 321 (366)
++++|+|||.+||++.++|+|.|+.||++.++++|++.+.+++.|+|+||+|+++++ ||++++++||++||+++++|+.
T Consensus 1610 ~~~~v~k~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1689 (2050)
T 3cmu_A 1610 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 1689 (2050)
T ss_dssp EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEEEEEccCCCCcceeEEEEecCCccccchhHHHHHhhcCeEeccCcEEEECCcCccchHHHHHHHHHHCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhcc
Q 017792 322 KLREKLVV 329 (366)
Q Consensus 322 ~~~~~~~~ 329 (366)
+|++++..
T Consensus 1690 ~~~~~~~~ 1697 (2050)
T 3cmu_A 1690 KVRELLLS 1697 (2050)
T ss_dssp HHHHHHCS
T ss_pred HHHHHHhc
Confidence 99998743
No 8
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=100.00 E-value=3.9e-49 Score=368.57 Aligned_cols=283 Identities=25% Similarity=0.413 Sum_probs=219.7
Q ss_pred CCCcccCChHHHHHhhC---CCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEeCCCCCCHHHHhhcccc
Q 017792 35 HVPVVSTGSFALDIALG---TGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~---~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~--gg~vl~id~e~~~~~~~~~~ig~~ 109 (366)
.++++|||+++||++|| +||+|+| +++|+||||+||||||++++..+++. ++.|+|+|+|+++++.+++++|++
T Consensus 3 ~~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd 81 (333)
T 3io5_A 3 HMDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVD 81 (333)
T ss_dssp ---CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCC
T ss_pred CCCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCC
Confidence 46799999999999998 5999999 99999999999999999999999886 789999999999999999999999
Q ss_pred cCcceecCCCCHHHH-HHHHHHH--HhcCCceEEEEecccccCCCCccCCccchhhHH--HHHHHHHHHHHHHHHHhhhc
Q 017792 110 TENLLLAQPDCGEQA-LSLVDTL--IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMA--MQARLMSQALRKLSHSLSLS 184 (366)
Q Consensus 110 ~~~~~~~~~~~~e~~-l~~~~~~--~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~--~~ar~l~~~L~~L~~~l~~~ 184 (366)
++++++.++.+.+++ ++.+..+ +++..++++||||++++++..++++++++.+.+ .++|.++++|++|...++++
T Consensus 82 ~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~ 161 (333)
T 3io5_A 82 PERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTK 161 (333)
T ss_dssp GGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999 8887776 677889999999999999878899888877666 78999999999999999999
Q ss_pred CcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEE
Q 017792 185 QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELE 264 (366)
Q Consensus 185 ~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~ 264 (366)
|++||+|||+++ ++. +|++|. ++||+++ |+|+.||.+++...++++++..|+++.++++|+|+.+|....+|+|.
T Consensus 162 ~i~vi~tNQV~k-~G~-~fg~p~--~~GG~~l-~~ss~Rl~lrk~~~ik~~~~~~G~~~~v~~~k~kv~k~k~~~~~~i~ 236 (333)
T 3io5_A 162 NIPCIAINHTYE-TQE-MFSKTV--MGGGTGP-MYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVK 236 (333)
T ss_dssp TCEEEEEEEC-------------------CCG-GGGSSEEEEEEEC----------CEEEEEEEECSSBCTTCEEEEEBC
T ss_pred CCEEEEECCeee-cCc-ccCCCC--CCCccee-eeeeEEEEEEeccccccCCccEEeEEEEeEEEEEEccCCcCCcEEEE
Confidence 999999999998 665 477773 4999999 99999999999999999999999999999999999999888899999
Q ss_pred eCCCCCchhhHHHHHHhcCcccc-cceeEEec--C----------cccccH-----HHHHHHHhhCHHHHHHHHHHHH
Q 017792 265 FGKGISRESEIIDLALKHKFASK-AGAMFTYN--D----------RNFRGK-----EAFKQFLVENESVREELVIKLR 324 (366)
Q Consensus 265 ~~~Gi~~~~~i~~~~~~~~~i~~-~g~~~~~~--~----------~~~~~~-----~~~~~~l~~~~~~~~~l~~~~~ 324 (366)
|+.||++.++++++|.+.++|.| +|+||+|+ + ++++.+ +.|.. |-+|+++.+.|+.+..
T Consensus 237 ~~~Gi~~~~~lld~a~~~gii~k~~g~wy~~~~~~~~~G~~~~~ek~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~ 313 (333)
T 3io5_A 237 FDGGIDPYSGLLDMALELGFVVKPKNGWYAREFLDEETGEMIREEKSWRAKDTNCTTFWGP-LFKHQPFRDAIKRAYQ 313 (333)
T ss_dssp TTSCBCTTTTHHHHHHHHTSEECSSTTEEEEEEEETTTTEEEECSCCEEGGGGSSHHHHHH-HHTCHHHHHHHHHHHB
T ss_pred ecCCCChHHHHHHHHHhCCeEEcCCCceEEeccCCccccccHHHHHHHHhhcCchHHHHHH-HhcCchHHHHHHHhhC
Confidence 99999999999999999999998 99999994 2 223333 33333 4567889998887763
No 9
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=100.00 E-value=3.3e-47 Score=420.06 Aligned_cols=325 Identities=57% Similarity=0.911 Sum_probs=296.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|.++|+.|+++|++.||++++|.|++. ......++|||++.||.+|++||+|+|++++|+|+||+|||||+++++..+
T Consensus 329 ~~~~~l~~a~~~i~~~fg~~~~~~l~~~-~~~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~ 407 (1706)
T 3cmw_A 329 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGSEEGGGC-GGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCcceecccc-ccccCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999999984 446789999999999999988999999999999999999999999999999
Q ss_pred hhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 83 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 83 ~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
+..++.|+|+++|+++++.+++++|++.+++.+.++.+.++++..+..+++...+++|||||++.+.+..++++.+|+.+
T Consensus 408 ~~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~ 487 (1706)
T 3cmw_A 408 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 487 (1706)
T ss_dssp HHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCC
T ss_pred HHhCCCeEEEEccCchHHHHHHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccc
Confidence 99999999999999999988999999999999999999999999998888888999999999999986555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccE
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~ 242 (366)
.+.++|.+++.+++|...+++.|++||++||+++.++. .|++| ..+.||.+|+|+||.|+.+++.+.++++++..+.+
T Consensus 488 ~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~-~fg~~-~~p~gg~ale~~ADv~L~L~R~~~~~~g~~~~~~~ 565 (1706)
T 3cmw_A 488 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 565 (1706)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTC-CSSCC-EEESSCSHHHHHEEEEEEEEEEEEEEETTEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCEEEEEeeccccccc-ccCCC-ccCCCCcceeeeCCEEEEEEeccccccCccccCcE
Confidence 45677889999999999999999999999999998775 25555 78899999999999999999988777776655777
Q ss_pred EEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 017792 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 321 (366)
Q Consensus 243 ~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~ 321 (366)
+.++++|||.+||++.+.|.|.|+.||++.+++++++.+.++|.++|+||+|.++++ ||++.+..||++||.+.++|+.
T Consensus 566 ~~l~V~KnR~gp~~~~~~F~I~~~~Gi~~~~~~~d~a~~~~~i~k~g~w~~y~~~~i~~g~~~~~~~l~~~p~l~~~i~~ 645 (1706)
T 3cmw_A 566 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 645 (1706)
T ss_dssp EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSEEEETTEEEETTEEEEESHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCeEEEEEecCCCccccccHHHhhhhcCceeccccEEeeCCceecccHHHHHHHHhhCHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhccC
Q 017792 322 KLREKLVVD 330 (366)
Q Consensus 322 ~~~~~~~~~ 330 (366)
++++++++.
T Consensus 646 ~~~~~~~~~ 654 (1706)
T 3cmw_A 646 KVRELLLSN 654 (1706)
T ss_dssp HHHHHHCSS
T ss_pred HHHHHhccC
Confidence 999998864
No 10
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=99.97 E-value=5.5e-31 Score=253.02 Aligned_cols=246 Identities=26% Similarity=0.404 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 5 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
+++++.|.+.+++.|++++.|.-. ..+..++|||++.||.+|+ ||+++|++++|+|+||+||||||++++..++.
T Consensus 74 ~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~i~TG~~~LD~~Lg-GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~ 148 (343)
T 1v5w_A 74 DKIKEAANKLIEPGFLTAFEYSEK----RKMVFHITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQL 148 (343)
T ss_dssp ------------CCSEEHHHHHHH----GGGCCCBCCSCHHHHHHTT-SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcccCCCcHHHHHhh----hcccceeecCChhHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 457778888888888887766532 2457899999999999999 99999999999999999999999999998654
Q ss_pred ------cCCeEEEEeCCCCCCHH----HHhhccccc----CcceecCCCCHHHHH---HHHHHHHhc--CCceEEEEecc
Q 017792 85 ------QGGYCVFIDAEHALDPS----LAETIGVKT----ENLLLAQPDCGEQAL---SLVDTLIRS--GSVDVVVVDSV 145 (366)
Q Consensus 85 ------~gg~vl~id~e~~~~~~----~~~~ig~~~----~~~~~~~~~~~e~~l---~~~~~~~~~--~~~~lvviDsl 145 (366)
.++.|+|+++|+.+++. +++++|+++ +++.+.++.+.++++ ..+..++.. ..++++||||+
T Consensus 149 ~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 149 PGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp CBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred ccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 46789999999987753 566788876 467777776666544 445566666 78999999999
Q ss_pred cccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccc-cC-CCCeeeccCCceeeeeceEE
Q 017792 146 AALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTF-GF-GGPTEVTCGGNALKFYASVR 223 (366)
Q Consensus 146 ~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~-~~-~~~~~~~~gG~~l~~~ad~~ 223 (366)
+.++ ..++.+. ++ .....+.+.+.++.|...++++|++||++||.++..+.. .| ++| ..++||+.|+|++|.|
T Consensus 229 ~~l~-~~~~~~~-g~--~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~g~~-~~~~gg~~i~~~ad~~ 303 (343)
T 1v5w_A 229 MALF-RVDFSGR-GE--LAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADP-KKPIGGHILAHASTTR 303 (343)
T ss_dssp GGGH-HHHCCGG-GC--HHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--------------------CCTTTTSSSEE
T ss_pred HHHH-HHHhccc-cc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCccccCCCC-CcCCchHHHHHhCCEE
Confidence 9998 4444321 11 111223466677777777788999999999999876542 13 233 5788999999999999
Q ss_pred EEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCCc
Q 017792 224 LNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISR 271 (366)
Q Consensus 224 i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~ 271 (366)
|.|++.. +..+.+++.|||++|. ..+.|.|+ +.||..
T Consensus 304 l~l~r~~---------~~~r~~~v~K~r~~p~-~~~~f~I~-~~Gi~~ 340 (343)
T 1v5w_A 304 ISLRKGR---------GELRIAKIYDSPEMPE-NEATFAIT-AGGIGD 340 (343)
T ss_dssp EEEEESS---------TTEEEEEEEECTTCCS-SCEEEEEE-TTEEEE
T ss_pred EEEEEcC---------CCEEEEEEEECCCCCC-eeEEEEEe-CCCccC
Confidence 9999753 2345799999999854 45799998 788753
No 11
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=99.97 E-value=1.3e-30 Score=248.57 Aligned_cols=245 Identities=25% Similarity=0.411 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 5 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
+++++.|.+.+++.|++++.|.-. .....++|||++.||.+|+ ||+++|++++|+|+||+|||||+++++..++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~TG~~~LD~~L~-GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~ 133 (324)
T 2z43_A 59 QKIIKEARDALDIRFKTALEVKKE----RMNVKKISTGSQALDGLLA-GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQL 133 (324)
T ss_dssp -------------CCCCHHHHHHH----HCSCCEECCSCHHHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcccCccchhhhhhh----hccCCcccCCchhHHHhcC-CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhc
Confidence 457788888899999988877532 2467899999999999999 99999999999999999999999999998765
Q ss_pred c------CCeEEEEeCCCCCCHH----HHhhcccccC----cceecCCCCHHH---HHHHHHHHHhc-CCceEEEEeccc
Q 017792 85 Q------GGYCVFIDAEHALDPS----LAETIGVKTE----NLLLAQPDCGEQ---ALSLVDTLIRS-GSVDVVVVDSVA 146 (366)
Q Consensus 85 ~------gg~vl~id~e~~~~~~----~~~~ig~~~~----~~~~~~~~~~e~---~l~~~~~~~~~-~~~~lvviDsl~ 146 (366)
. ++.|+|+++|+.+++. +++++|++++ ++.+.++.+.++ ++..+..++.. ..++++||||++
T Consensus 134 ~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 134 PPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp CGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred ccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 4 6789999999987643 5667888764 677777777775 45556666666 789999999999
Q ss_pred ccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEE
Q 017792 147 ALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNI 226 (366)
Q Consensus 147 ~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l 226 (366)
.++ ..++.+. ++ .....+.+.+.++.|...+++++++||++||.++..+. .|+++ ..+.+|..|+|++|.||.|
T Consensus 214 ~l~-~~~~~~~-g~--~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~-~~~~~-~~~~gg~~l~~~~d~~l~l 287 (324)
T 2z43_A 214 SHF-RAEYPGR-EN--LAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDM-FYGDP-TVAVGGHTLYHVPGIRIQL 287 (324)
T ss_dssp HHH-HHHSCTT-TS--HHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--------------------------CEEEEE
T ss_pred HHh-hhhhcCc-cc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCC-cCCCC-CCCCchHHHHhhCcEEEEE
Confidence 987 3333321 11 11122346667777777778899999999999987653 14334 5788999999999999999
Q ss_pred EEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCCc
Q 017792 227 KRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISR 271 (366)
Q Consensus 227 ~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~ 271 (366)
++.. +..+.+++.|||++|. ..+.|.|. +.||..
T Consensus 288 ~r~~---------~~~r~~~v~k~~~~p~-~~~~f~I~-~~Gi~~ 321 (324)
T 2z43_A 288 KKSR---------GNRRIARVVDAPHLPE-GEVVFALT-EEGIRD 321 (324)
T ss_dssp EECS---------TTEEEEEEEECSSSCC-EEEEEEEE-TTEEEC
T ss_pred EEcC---------CCeEEEEEEECCCCCc-eEEEEEEe-CCCccc
Confidence 9753 2344799999999854 45789998 778753
No 12
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=99.97 E-value=4.8e-30 Score=244.32 Aligned_cols=244 Identities=27% Similarity=0.389 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 5 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
.++++.|.+.+++.|++++.|.-. .....++|||++.||.+|+ ||+++|++++|+|+||+||||||++++..++.
T Consensus 50 ~~~i~~a~~~~~~~~~~~~~~~~~----~~~~~~i~TG~~~LD~~l~-GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l 124 (322)
T 2i1q_A 50 AKMIMGARDLCDLGFKSGIDLLKQ----RSTVWKLSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQN 124 (322)
T ss_dssp HHHHHHHHHHTTCSCCCTHHHHHH----HTTCCEECCSCHHHHHHTT-SSEETTEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHH----hccCCeecCCChhHHHhcC-CCccCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 367888888888889988877422 2467899999999999999 99999999999999999999999999987532
Q ss_pred ------------cC----CeEEEEeCCCCCCHH----HHhhccccc----CcceecCCCCHHH---HHHHHHHHHhc-CC
Q 017792 85 ------------QG----GYCVFIDAEHALDPS----LAETIGVKT----ENLLLAQPDCGEQ---ALSLVDTLIRS-GS 136 (366)
Q Consensus 85 ------------~g----g~vl~id~e~~~~~~----~~~~ig~~~----~~~~~~~~~~~e~---~l~~~~~~~~~-~~ 136 (366)
.| +.|+|+++|+.+++. +++++|+++ +++.+.++.+.++ ++..+..++.. .+
T Consensus 125 ~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 204 (322)
T 2i1q_A 125 PEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNN 204 (322)
T ss_dssp GGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCE
T ss_pred cccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccC
Confidence 24 689999999987653 566778876 4677777788775 44455566666 78
Q ss_pred ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCcee
Q 017792 137 VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNAL 216 (366)
Q Consensus 137 ~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l 216 (366)
++++||||++.++ ..++.+. ++ .....+.+.+.++.|...+++++++||++||.++..+. .|+++ ..+.||..|
T Consensus 205 ~~lvVIDsl~~l~-~~~~~~~-~~--~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~-~~g~~-~~~~g~~~~ 278 (322)
T 2i1q_A 205 IKLVVIDSLTSTF-RNEYTGR-GK--LAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDA-FFGMA-EQAIGGHIV 278 (322)
T ss_dssp EEEEEEECSSHHH-HHHCCCT-TS--HHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC--------C-CEESSHHHH
T ss_pred ccEEEEECcHHHH-HHHhcCC-cc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCC-CCCCC-cCCCCcHHH
Confidence 9999999999987 3333321 11 11122346677778887778899999999999887553 24344 578899999
Q ss_pred eeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCC
Q 017792 217 KFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGIS 270 (366)
Q Consensus 217 ~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~ 270 (366)
+|++|.||.|++.. + ..+.+++.|||++|.+ .+.|.|. +.||.
T Consensus 279 ~~~~d~~i~l~~~~----~-----~~r~~~v~k~~~~p~~-~~~f~I~-~~Gi~ 321 (322)
T 2i1q_A 279 GHAATFRFFVRKGK----G-----DKRVAKLYDSPHLPDA-EAIFRIT-EKGIQ 321 (322)
T ss_dssp HHHCSEEEEEEECS----T-----TEEEEEEEECSSSCCE-EEEEEEE-TTEEE
T ss_pred HhcCcEEEEEEecC----C-----CeEEEEEEECCCCCCe-EEEEEEe-CCCcC
Confidence 99999999999753 1 2337999999998654 5689998 77864
No 13
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.96 E-value=6.4e-29 Score=242.38 Aligned_cols=223 Identities=26% Similarity=0.453 Sum_probs=155.0
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEeCCCCCCH----HHH
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLA 103 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~------~gg~vl~id~e~~~~~----~~~ 103 (366)
....+++||++.||++|+ |||++|++++|+||||||||||+++++..... .++.++|+++++.+.. .++
T Consensus 155 ~~~~~i~TG~~~LD~lLg-GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a 233 (400)
T 3lda_A 155 SELICLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIA 233 (400)
T ss_dssp HTSCEECCSCHHHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHH
T ss_pred ccCCccccCChhHHHHhc-CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHH
Confidence 357899999999999999 99999999999999999999999998866553 2567999999998764 356
Q ss_pred hhcccccC----cceecCCCCHHHHH---HHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHH
Q 017792 104 ETIGVKTE----NLLLAQPDCGEQAL---SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 176 (366)
Q Consensus 104 ~~ig~~~~----~~~~~~~~~~e~~l---~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~ 176 (366)
+++|++++ ++.+....+.++.. ..+...+....+++++||+++.+++ .++++. |+ .+.+.+.+...++.
T Consensus 234 ~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~-~~~sg~-g~--l~~Rq~~l~~il~~ 309 (400)
T 3lda_A 234 QRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR-TDFSGR-GE--LSARQMHLAKFMRA 309 (400)
T ss_dssp HHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--------CC--HHHHHHHHHHHHHH
T ss_pred HHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc-hhhcCc-cc--hHHHHHHHHHHHHH
Confidence 77888776 66777666665544 3344455566899999999999984 455431 11 12233444555556
Q ss_pred HHHHhhhcCcEEEEEecCCcccccc-cCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 255 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~-~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~ 255 (366)
|....+++|+|||+++|++...+.. .|.++...+.||..|+|++|+||.|++.. + ..+.+++.|+|+.|+
T Consensus 310 L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~----g-----~~R~l~v~K~R~~p~ 380 (400)
T 3lda_A 310 LQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK----G-----CQRLCKVVDSPCLPE 380 (400)
T ss_dssp HHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS----T-----TEEEEEEEECSSSCS
T ss_pred HHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC----C-----CcEEEEEEcCCCCCC
Confidence 6666677899999999997654431 13333367889999999999999999853 1 234799999999888
Q ss_pred CCeeEEEEEeCCCCCch
Q 017792 256 FKTAQFELEFGKGISRE 272 (366)
Q Consensus 256 ~~~~~~~i~~~~Gi~~~ 272 (366)
.. +.|.|. +.||...
T Consensus 381 ~e-~~F~It-~~Gi~~~ 395 (400)
T 3lda_A 381 AE-CVFAIY-EDGVGDP 395 (400)
T ss_dssp CE-EEEEEE-TTEEECC
T ss_pred Cc-eEEEEe-CCccccc
Confidence 75 899998 8888653
No 14
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.96 E-value=9.1e-28 Score=218.18 Aligned_cols=221 Identities=24% Similarity=0.403 Sum_probs=146.4
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEeCCCCCCH----HHHh
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE 104 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~------~gg~vl~id~e~~~~~----~~~~ 104 (366)
+++++|||++.||.+|+ ||+++|++++|+||||||||||+++++..+.. .++.++|++++..+.. .+++
T Consensus 2 ~~~~i~tG~~~LD~~l~-ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~ 80 (243)
T 1n0w_A 2 EIIQITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE 80 (243)
T ss_dssp CCCEECCSCHHHHHHTT-TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHH
T ss_pred CceEecCCChHHHHhhc-CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHH
Confidence 46789999999999999 99999999999999999999999999997543 2568999999987553 3566
Q ss_pred hccccc----CcceecCCCCHHHHHHH---HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHH
Q 017792 105 TIGVKT----ENLLLAQPDCGEQALSL---VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 177 (366)
Q Consensus 105 ~ig~~~----~~~~~~~~~~~e~~l~~---~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L 177 (366)
++++++ +++.+..+.+.++.... +...+....+++++||+++.+.. ..+++. ++ ...+.+.+...+..|
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~-~~~~~~-~~--~~~r~~~~~~~~~~l 156 (243)
T 1n0w_A 81 RYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR-TDYSGR-GE--LSARQMHLARFLRML 156 (243)
T ss_dssp HTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC---------C--HHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH-HHhcCC-cc--HHHHHHHHHHHHHHH
Confidence 788877 56777667776665433 45555667899999999998873 333321 11 111222344555566
Q ss_pred HHHhhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCC
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPF 256 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~ 256 (366)
...+++.|+|||+++|..+..+... +.+....++||..|+++||.++.|+++. +..+.+.+.|+|++++.
T Consensus 157 ~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~---------~~~r~l~v~K~r~~~~~ 227 (243)
T 1n0w_A 157 LRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR---------GETRICKIYDSPCLPEA 227 (243)
T ss_dssp HHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS---------TTEEEEEECCBTTBSCE
T ss_pred HHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC---------CCeEEEEEEECCCCCCC
Confidence 6666778999999999987754310 2122246788999999999999999752 22347999999998764
Q ss_pred CeeEEEEEeCCCCCc
Q 017792 257 KTAQFELEFGKGISR 271 (366)
Q Consensus 257 ~~~~~~i~~~~Gi~~ 271 (366)
...|.|. +.||..
T Consensus 228 -~~~f~I~-~~Gi~~ 240 (243)
T 1n0w_A 228 -EAMFAIN-ADGVGD 240 (243)
T ss_dssp -EEEEEEE-TTEEEC
T ss_pred -eEEEEEe-CCcccc
Confidence 4789998 888753
No 15
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.96 E-value=2.5e-28 Score=234.86 Aligned_cols=245 Identities=25% Similarity=0.388 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHH-hcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 4 KDLALQQALDQITS-SFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 4 ~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+++++.+.+.++. .|.+++.++-. .....++|||++.||.+|+ ||+++|++++|+||||||||||++++++.+
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~isTG~~~LD~lL~-ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 81 ALKIIQAARKAANLGTFMRADEYLKK----RATIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHHHHHCSTTSCEEHHHHHHH----HHTCCEECCSCHHHHHHHT-SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhccccCCccHHHHHhh----hccCCeecCCCHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34566666666665 56555444321 2457899999999999999 999999999999999999999999999998
Q ss_pred hhc------CCeEEEEeCCCCCCHH----HHhhccccc----CcceecCCCCH---HHHHHHHHHHHhc-----CCceEE
Q 017792 83 QRQ------GGYCVFIDAEHALDPS----LAETIGVKT----ENLLLAQPDCG---EQALSLVDTLIRS-----GSVDVV 140 (366)
Q Consensus 83 ~~~------gg~vl~id~e~~~~~~----~~~~ig~~~----~~~~~~~~~~~---e~~l~~~~~~~~~-----~~~~lv 140 (366)
+.. +|.|+|+++++.+.+. +++..++.+ +++.+....+. .+.+..+..++.. .+++++
T Consensus 156 ~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 156 QLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp TSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred ccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 532 3688999999886532 344455443 45555544332 3456666666665 689999
Q ss_pred EEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeec
Q 017792 141 VVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYA 220 (366)
Q Consensus 141 viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~a 220 (366)
|+|++++++ ..+..+. ++ .....+.+.+.++.|...++++|+|||++||.+...+. .++++ ..+.+|..|+|++
T Consensus 236 IlDs~ta~l-d~~~~~~-~~--~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~-~~~~~-~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 236 IVDSLTSHF-RSEYIGR-GA--LAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDA-FFGDP-TRPIGGHILAHSA 309 (349)
T ss_dssp EEETSSTTH-HHHCCST-TT--HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTTC
T ss_pred EEeCchHhh-hhhhccc-cc--HHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccccc-ccCCc-cccCCcceEeecC
Confidence 999999987 3333221 11 11222334455666666667789999999999876543 13333 6789999999999
Q ss_pred eEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCC
Q 017792 221 SVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGIS 270 (366)
Q Consensus 221 d~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~ 270 (366)
+.+|.+++.. +..+.+++.|+|+.|.+ .+.|.|+ +.||.
T Consensus 310 ~~rL~l~~~~---------~~~Ri~k~~ks~~~~~~-~~~f~It-~~Gi~ 348 (349)
T 1pzn_A 310 TLRVYLRKGK---------GGKRIARLIDAPHLPEG-EAVFSIT-EKGIE 348 (349)
T ss_dssp SEEEEEEECT---------TSEEEEEESCSSSSCCS-EEEEEEE-TTEEE
T ss_pred cEEEEEEEcC---------CCeEEEEEEeCCCCCCe-EEEEEEc-CCCCC
Confidence 9999998742 22346889999987765 4899998 77864
No 16
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.93 E-value=2.9e-25 Score=199.89 Aligned_cols=206 Identities=26% Similarity=0.427 Sum_probs=140.0
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEeCCCCCCH----HHHh
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE 104 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~------~gg~vl~id~e~~~~~----~~~~ 104 (366)
.+++++||++.||.+|+ ||+++|++++|+||||||||||++++++.+.+ .++.++|++++..+.. .+.+
T Consensus 3 ~~~~i~tG~~~LD~~l~-ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~ 81 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 81 (231)
T ss_dssp CCCEECCSCHHHHHHTT-SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred cCCccCCCChhHHhHhc-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999 99999999999999999999999999997765 2567899999886553 3455
Q ss_pred hcccccC----cceecCCCCHHH---HHHHHHHHHh-----cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHH
Q 017792 105 TIGVKTE----NLLLAQPDCGEQ---ALSLVDTLIR-----SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 172 (366)
Q Consensus 105 ~ig~~~~----~~~~~~~~~~e~---~l~~~~~~~~-----~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~ 172 (366)
.+++.++ ++.+.......+ .+..+..++. ..+++++++|++...+ ..++++..... .+.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l-~~~~~~~~~~~---~r~~~~~~ 157 (231)
T 4a74_A 82 NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF-RSEYIGRGALA---ERQQKLAK 157 (231)
T ss_dssp HTTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH-HHHSCSTTHHH---HHHHHHHH
T ss_pred HcCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHh-ccccCCCcchh---HHHHHHHH
Confidence 5666553 555554444332 2333444444 6689999999998876 23333311111 12222334
Q ss_pred HHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCC
Q 017792 173 ALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKL 252 (366)
Q Consensus 173 ~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~ 252 (366)
.+..|...+++.|+|||+++|..+. +|..+.++||.++.|+++. ...+.+.+.|+|+
T Consensus 158 ~~~~l~~~~~~~g~tvi~vtH~~~~--------------~g~~~~~~~d~~l~l~~~~---------~~~r~l~~~K~r~ 214 (231)
T 4a74_A 158 HLADLHRLANLYDIAVFVTNQVQAN--------------GGHILAHSATLRVYLRKGK---------GGKRIARLIDAPH 214 (231)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECC-----------------------CCSEEEEEEECT---------TSCEEEEEESCC-
T ss_pred HHHHHHHHHHHCCCeEEEEeecccC--------------cchhhHhhceEEEEEEecC---------CCeEEEEEEeCCC
Confidence 4455555556779999999997753 4566999999999998743 1233699999999
Q ss_pred CCCCCeeEEEEEeCCCCC
Q 017792 253 APPFKTAQFELEFGKGIS 270 (366)
Q Consensus 253 ~~~~~~~~~~i~~~~Gi~ 270 (366)
+|+... .|.|. +.|+.
T Consensus 215 ~~~~~~-~f~i~-~~Gl~ 230 (231)
T 4a74_A 215 LPEGEA-VFSIT-EKGIE 230 (231)
T ss_dssp -CCSCE-EEEEE-TTEEE
T ss_pred CCCceE-EEEEe-ccccc
Confidence 988764 89998 77763
No 17
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.93 E-value=3.9e-25 Score=197.75 Aligned_cols=206 Identities=28% Similarity=0.393 Sum_probs=148.1
Q ss_pred cccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHH----HHhhcccccC--
Q 017792 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS----LAETIGVKTE-- 111 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~----~~~~ig~~~~-- 111 (366)
++|||++.||.+++ ||+++|++++|+|+||||||||+++++. ..++.++|++.+...... +.+.++++++
T Consensus 1 ri~tG~~~LD~~l~-Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (220)
T 2cvh_A 1 MLSTGTKSLDSLLG-GGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEA 76 (220)
T ss_dssp CBCCSCHHHHHHTT-SSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHH
T ss_pred CcccCcHHHHHhhc-CCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHH
Confidence 58999999999999 9999999999999999999999999998 557889999998855532 2334454332
Q ss_pred --cceecCCCCHH---HHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCc
Q 017792 112 --NLLLAQPDCGE---QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 186 (366)
Q Consensus 112 --~~~~~~~~~~e---~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~ 186 (366)
++.+..+.+.+ +.+..+..++.. +++++++|+++.+.... -.. .. ..+.+...++.|...+++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~-~~~--~~-----~~~~~~~~~~~L~~l~~~~~~ 147 (220)
T 2cvh_A 77 LSRFILFTPSDFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAE-ENR--SG-----LIAELSRQLQVLLWIARKHNI 147 (220)
T ss_dssp HHHEEEECCTTTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGG-GGS--ST-----THHHHHHHHHHHHHHHHHHTC
T ss_pred hhcEEEEecCCHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhc-Cch--HH-----HHHHHHHHHHHHHHHHHHcCC
Confidence 34454544443 345555555544 69999999999886321 110 11 122334444445555567799
Q ss_pred EEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeC
Q 017792 187 ILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFG 266 (366)
Q Consensus 187 tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~ 266 (366)
+||+++|..+..+. ....+.++..|++.||.++.|.+.. . +..+.+.+.|+|.++++....|.|. +
T Consensus 148 ~vi~~~h~~~~~~~-----~~~~p~~~~~~~~~~d~vi~l~~~~---~-----~~~r~l~v~K~r~~~~~~~~~f~I~-~ 213 (220)
T 2cvh_A 148 PVIVINQVHFDSRT-----EMTKPVAEQTLGYRCKDILRLDKLP---K-----PGLRVAVLERHRFRPEGLMAYFRIT-E 213 (220)
T ss_dssp CEEEEECSSSSCTT-----SSCCSCCCHHHHHTSSEEEEEEECS---S-----TTEEEEEEEECSSSCTTCEEEEEEE-T
T ss_pred EEEEEeeEEEcCCC-----CccccCCCcceeecCcEEEEEEEec---C-----CCEEEEEEEeCCCCCCCceEEEEEe-C
Confidence 99999998875332 1245677788999999999999764 1 1234789999999988777899998 8
Q ss_pred CCCC
Q 017792 267 KGIS 270 (366)
Q Consensus 267 ~Gi~ 270 (366)
.||.
T Consensus 214 ~Gi~ 217 (220)
T 2cvh_A 214 RGIE 217 (220)
T ss_dssp TEEE
T ss_pred Ccee
Confidence 8875
No 18
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.93 E-value=3.7e-25 Score=201.53 Aligned_cols=210 Identities=21% Similarity=0.236 Sum_probs=146.0
Q ss_pred CCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEeCCCCCCHH--HHhhcccc
Q 017792 33 PRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALDPS--LAETIGVK 109 (366)
Q Consensus 33 ~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~-~~gg~vl~id~e~~~~~~--~~~~ig~~ 109 (366)
..++++||||++.||.+|+ ||+++|++++|+|+||+|||+||++++.... ..+..|+|++.|++.... ++.+.+.+
T Consensus 6 ~~~i~ri~TGi~~LD~~l~-GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~ 84 (251)
T 2zts_A 6 YQPVRRVKSGIPGFDELIE-GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWD 84 (251)
T ss_dssp --CCCEECCSCTTTGGGTT-TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCC
T ss_pred cCCCCeecCCcHHHHHhhc-CCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCC
Confidence 3689999999999999999 9999999999999999999999999988754 446789999999876542 23333332
Q ss_pred cC------cce------------------ecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHH
Q 017792 110 TE------NLL------------------LAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAM 165 (366)
Q Consensus 110 ~~------~~~------------------~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~ 165 (366)
.+ ++. .......++++..+...+....++++++|++..+... ... ..
T Consensus 85 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~--~~~---~~---- 155 (251)
T 2zts_A 85 FEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALR--LEE---ER---- 155 (251)
T ss_dssp HHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHH--SSS---GG----
T ss_pred hHHHHhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhh--ccC---hH----
Confidence 21 111 1123356677777888888889999999999887521 111 11
Q ss_pred HHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEE
Q 017792 166 QARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAV 245 (366)
Q Consensus 166 ~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l 245 (366)
. +...++.|...+++.|+++++++|..+.... ...+...+++.||.++.|++.+ .+. ...+.+
T Consensus 156 ~---~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~--------~~~~~~~~~~~aD~vi~l~~~~---~~~---~~~R~l 218 (251)
T 2zts_A 156 K---IREVLLKLNTILLEMGVTTILTTEAPDPQHG--------KLSRYGIEEFIARGVIVLDLQE---KNI---ELKRYV 218 (251)
T ss_dssp G---HHHHHHHHHHHHHHHCCEEEEEECCC----C--------CSSSSSCGGGGCSEEEEEEEEE---CSS---SEEEEE
T ss_pred H---HHHHHHHHHHHHHHcCCCeEEEEEEeccccc--------ccccCCceeEEeeEEEEEEEEe---cCC---eEEEEE
Confidence 1 2234555566667889999999998654221 1223344789999999998653 111 234479
Q ss_pred EEEecCCCCC-CCeeEEEEEeCCCCC
Q 017792 246 KIVKNKLAPP-FKTAQFELEFGKGIS 270 (366)
Q Consensus 246 ~v~K~r~~~~-~~~~~~~i~~~~Gi~ 270 (366)
.|.|+|.++. .....|.|+ +.||.
T Consensus 219 ~I~K~R~~~~~~~~~~f~It-~~Gi~ 243 (251)
T 2zts_A 219 LIRKMRETRHSMKKYPFEIG-PNGIV 243 (251)
T ss_dssp EEEEETTCCCCCBEEEEEEE-TTEEE
T ss_pred EEEEcCCCCCCCEEEEEEEe-CCcEE
Confidence 9999998874 356789998 77875
No 19
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.93 E-value=9.6e-25 Score=198.50 Aligned_cols=204 Identities=22% Similarity=0.270 Sum_probs=147.0
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCc-
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN- 112 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~- 112 (366)
++++|||++.||.+|+ ||+++|++++|+|+||+|||||+++++..+.+.++.++|++.+..... .++.++|+++++
T Consensus 2 ~~~i~tG~~~LD~~l~-gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~ 80 (247)
T 2dr3_A 2 TRRVKTGIPGVDEILH-GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPY 80 (247)
T ss_dssp -CEECCCCTTHHHHTT-TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHH
T ss_pred cccccCCchhHHHHcC-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHH
Confidence 3589999999999999 999999999999999999999999999998888889999999986543 334556766542
Q ss_pred -----ceec-------------------CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHH
Q 017792 113 -----LLLA-------------------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQAR 168 (366)
Q Consensus 113 -----~~~~-------------------~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar 168 (366)
+.+. .+.+..++...+...+...+++++++|+++.+.. . + .. ..+
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~-~---~---~~----~~~ 149 (247)
T 2dr3_A 81 EEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYI-N---K---PA----MAR 149 (247)
T ss_dssp HHHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTT-T---C---GG----GHH
T ss_pred hhCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhc-C---C---HH----HHH
Confidence 2111 1345667777777776666789999999998862 1 1 11 112
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEE
Q 017792 169 LMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIV 248 (366)
Q Consensus 169 ~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~ 248 (366)
+.+..|...+++.|++||+++|....... . .+..++++||.++.|++... .+ ...+.+.+.
T Consensus 150 ---~~l~~l~~~~~~~~~~vi~~~h~~~~~~~--~--------~~~~~~~~~D~vi~L~~~~~--~~----~~~r~l~v~ 210 (247)
T 2dr3_A 150 ---SIILQLKRVLAGTGCTSIFVSQVSVGERG--F--------GGPGVEHGVDGIIRLDLDEI--DG----ELKRSLIVW 210 (247)
T ss_dssp ---HHHHHHHHHHHHTTCEEEEEEECC----C--C--------C-CCHHHHSSEEEEEEEEEE--TT----EEEEEEEEE
T ss_pred ---HHHHHHHHHHHHCCCeEEEEecCCCCccc--c--------cccccceeEEEEEEEEEEcc--CC----eeEEEEEEE
Confidence 23444555556789999999998764211 1 12248899999999987542 11 234589999
Q ss_pred ecCCCCCC-CeeEEEEEeCCCCCc
Q 017792 249 KNKLAPPF-KTAQFELEFGKGISR 271 (366)
Q Consensus 249 K~r~~~~~-~~~~~~i~~~~Gi~~ 271 (366)
|+|.+++. ....|.|. +.|+..
T Consensus 211 K~R~~~~~~~~~~f~i~-~~Gi~~ 233 (247)
T 2dr3_A 211 KMRGTSHSMRRHPFDIT-DKGIIV 233 (247)
T ss_dssp EETTSCCCCBCEEEEEE-TTEEEE
T ss_pred ECCCCCCCCceEEEEEc-CCCEEE
Confidence 99998765 67889998 678753
No 20
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=99.92 E-value=9.6e-24 Score=200.26 Aligned_cols=234 Identities=18% Similarity=0.166 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 017792 6 LALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ 85 (366)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~ 85 (366)
+.+..+++.|++. .....++|||++.||.++| |+++|+++.|+|+||+|||||+++++..+...
T Consensus 32 ~~~~~~~~~~~~~--------------~~~~~~i~TG~~~LD~~lg--Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~ 95 (315)
T 3bh0_A 32 EALVTVYEEIESA--------------DGNITGVPSGFTELDRMTY--GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN 95 (315)
T ss_dssp HHHHHHHHHHHTC--------------SSSCCSBCCSCHHHHHHHS--SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc--------------cCCCCCccCChHHHHhhcC--CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 4566777777754 1246799999999999995 99999999999999999999999999998887
Q ss_pred CCeEEEEeCCCCCCHHHHh----hccccc---------------------------CcceecCC--CCHHHHHHHHHHHH
Q 017792 86 GGYCVFIDAEHALDPSLAE----TIGVKT---------------------------ENLLLAQP--DCGEQALSLVDTLI 132 (366)
Q Consensus 86 gg~vl~id~e~~~~~~~~~----~ig~~~---------------------------~~~~~~~~--~~~e~~l~~~~~~~ 132 (366)
+..|+|++.|++......+ ..+++. .++++... .+.+++...+..+.
T Consensus 96 g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~ 175 (315)
T 3bh0_A 96 DDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTK 175 (315)
T ss_dssp TCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999875532111 112221 12333333 47888888888888
Q ss_pred hcCCce--EEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-e
Q 017792 133 RSGSVD--VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-V 209 (366)
Q Consensus 133 ~~~~~~--lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~ 209 (366)
...+++ +||||+++.+... . .. . .+ ...+...++.|...++++|++||+++|.++..+...-..|.. .
T Consensus 176 ~~~~~~~~lVVID~l~~l~~~-~-~~--~--~r---~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~d 246 (315)
T 3bh0_A 176 RKNPGKRVIVMIDYLQLLEPA-K-AN--D--SR---TNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSD 246 (315)
T ss_dssp HTSSSCCEEEEEECGGGSBCS-C-TT--S--CH---HHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGG
T ss_pred HhcCCCCeEEEEeCchhcCCC-C-CC--C--CH---HHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHH
Confidence 777788 9999999998731 1 10 1 11 123334455555555778999999999987644311112211 1
Q ss_pred ccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCC
Q 017792 210 TCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKG 268 (366)
Q Consensus 210 ~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~G 268 (366)
..+...+++.||.++.|.+...+....+..+ .+.+.+.|||.++. ..+.+.|...
T Consensus 247 lr~sg~ie~~aD~vi~L~r~~~~~~~~~~~~-~~~l~v~K~R~G~~---g~~~l~f~~~ 301 (315)
T 3bh0_A 247 LRESGQLEQDADIIEFLYRDDYYDKESESKN-IVEVIIAKHRDGPV---GTVSLAFIKE 301 (315)
T ss_dssp GTTTSHHHHHCSEEEEEEEHHHHCTTCTTTT-EEEEEEEEETTSCC---EEEEEEEEGG
T ss_pred hhhhhhhHhhCCEEEEEecccccCccccCCC-cEEEEEECCcCCCC---ceEEEEEECC
Confidence 3455679999999999998765432222223 34799999998876 3555665433
No 21
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=99.91 E-value=4.9e-24 Score=203.10 Aligned_cols=242 Identities=17% Similarity=0.148 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHhcC-CCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 5 DLALQQALDQITSSFG-KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 5 ~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
.++|..+++.|++.+. .. ..+.++|||++.||.+++ |+++|+++.|.|+||+|||||+++++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-----------~~~~gi~TG~~~LD~~~g--Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 5 KEVLESAMDLITENQRKGS-----------LEVTGIPTGFVQLDNYTS--GFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----------TCCCSBCCSCHHHHHHHC--SBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-----------CCcCcccCCChHHHHHhc--CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4688999999999875 32 357899999999999996 999999999999999999999999999998
Q ss_pred hcCCeEEEEeCCCCCCHHHHhh----ccccc-------------------------CcceecC--CCCHHHHHHHHHHHH
Q 017792 84 RQGGYCVFIDAEHALDPSLAET----IGVKT-------------------------ENLLLAQ--PDCGEQALSLVDTLI 132 (366)
Q Consensus 84 ~~gg~vl~id~e~~~~~~~~~~----ig~~~-------------------------~~~~~~~--~~~~e~~l~~~~~~~ 132 (366)
..+..|+|++.|++..+...+- .+++. .++++.. ..++.++...+..+.
T Consensus 72 ~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~ 151 (338)
T 4a1f_A 72 NDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLK 151 (338)
T ss_dssp HTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHH
T ss_pred HcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHH
Confidence 8889999999998765422111 12111 1233333 247889988888887
Q ss_pred hcC-CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCe-eec
Q 017792 133 RSG-SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPT-EVT 210 (366)
Q Consensus 133 ~~~-~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~-~~~ 210 (366)
+.. .+++||||+++.+....... +.. ...+.++..|+.|+ ++.+|+||+++|+++..+...-..|. .-.
T Consensus 152 ~~~gg~~lIVIDyLqlm~~~~~~~---~r~---~ei~~isr~LK~lA---kel~vpVi~lsQl~R~~e~r~dkrP~lsDL 222 (338)
T 4a1f_A 152 SQHKELGIAFIDYLQLMSGSKATK---ERH---EQIAEISRELKTLA---RELEIPIIALVQLNRSLENRDDKRPILSDI 222 (338)
T ss_dssp HHCTTEEEEEEEEEECCCTHHHHH---HCC---CCHHHHHHHHHHHH---HHHTSCEEEEEECCGGGGGSSSCSCCGGGS
T ss_pred HhcCCCCEEEEechHHhcCCCCCC---ChH---HHHHHHHHHHHHHH---HHcCCeEEEEEecCccccccccCCCChHhc
Confidence 776 89999999999887311000 111 12233444455544 67899999999999876542112232 124
Q ss_pred cCCceeeeeceEEEEEEEeceeec------------Cc-c---c-----------------cccEEEEEEEecCCCCCCC
Q 017792 211 CGGNALKFYASVRLNIKRIGLVKK------------GE-E---T-----------------IGSQIAVKIVKNKLAPPFK 257 (366)
Q Consensus 211 ~gG~~l~~~ad~~i~l~~~~~~~~------------~~-~---~-----------------~g~~~~l~v~K~r~~~~~~ 257 (366)
.++.++++.||.+++|.|.+.+.. .. + . ......+.|.|||.+|.
T Consensus 223 reSg~IeqdAD~Vl~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiiiaK~R~G~~-- 300 (338)
T 4a1f_A 223 KDSGGIEQDADIVLFLYRGYIYQMRAEDNKIDKLKKEGKIEEAQELYLKVNEERRIHKQNGSIEEAEIIVAKNRNGAT-- 300 (338)
T ss_dssp EETTEECCCCSEEEEEECHHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTSCC--
T ss_pred ccchhhhhhCcEEEEEecchhcccccccccccccccccccccccchhhhhhhhhcccccccCCCceEEEEEeccCCCC--
Confidence 556779999999999999876643 11 1 0 02234788999999886
Q ss_pred eeEEEEEeCCCCCc
Q 017792 258 TAQFELEFGKGISR 271 (366)
Q Consensus 258 ~~~~~i~~~~Gi~~ 271 (366)
..+.+.|.....+
T Consensus 301 -g~v~l~f~~~~~~ 313 (338)
T 4a1f_A 301 -GTVYTRFNAPFTR 313 (338)
T ss_dssp -EEEEEEEEGGGTE
T ss_pred -ceEEEEEccccce
Confidence 5666766544433
No 22
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=99.91 E-value=4.6e-23 Score=204.46 Aligned_cols=227 Identities=17% Similarity=0.158 Sum_probs=151.5
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHH----Hhhccc
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSL----AETIGV 108 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~----~~~ig~ 108 (366)
....++|||++.||.++| |+++|++++|+|+||+|||||+++++..+... +.+|+|++.|++..... +...++
T Consensus 178 ~~~~~i~tG~~~LD~~lg--Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i 255 (444)
T 2q6t_A 178 GEVAGVRTGFKELDQLIG--TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARI 255 (444)
T ss_dssp -----CCCSCHHHHHHHC--CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTC
T ss_pred CCCCcccCCCHhhhhhcC--CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCC
Confidence 346799999999999995 99999999999999999999999999998864 67899999998765322 223344
Q ss_pred ccCc-------------------------ceecCC--CCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchh
Q 017792 109 KTEN-------------------------LLLAQP--DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 109 ~~~~-------------------------~~~~~~--~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
+.++ +++... .+..++...+..+....++++||||+++.+........ ..
T Consensus 256 ~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~---~~ 332 (444)
T 2q6t_A 256 DMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKS---GE 332 (444)
T ss_dssp CTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC----------
T ss_pred CHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCC---CC
Confidence 3332 223222 37888888888888777899999999999873200000 01
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCe-eeccCCceeeeeceEEEEEEEeceeecCccccc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPT-EVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~-~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g 240 (366)
. ....+...++.|...+++.+++||+++|.++..+...-..|. ....++..+++.||.++.|.+.+.+....+..+
T Consensus 333 ~---r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r~~~~~~~~~~~~ 409 (444)
T 2q6t_A 333 N---RQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYRDEYYNPHSEKAG 409 (444)
T ss_dssp C---HHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEEGGGTCSSSSCCS
T ss_pred C---HHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEecccccCCcCCCCC
Confidence 1 122334445555555567899999999998764431111121 112334569999999999998765432211123
Q ss_pred cEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 241 ~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
.+.+.|.|+|.++. ..+.+.|.....++
T Consensus 410 -~~~l~i~K~R~g~~---g~~~l~f~~~~~~f 437 (444)
T 2q6t_A 410 -IAEIIVGKQRNGPT---GTVELQFHASHVRF 437 (444)
T ss_dssp -EEEEEEEECSSSCC---EEEEEEEETTTTEE
T ss_pred -eEEEEEEecCCCCc---eEEEEEEECCccEE
Confidence 44799999999876 45667776555443
No 23
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.91 E-value=4.8e-23 Score=204.92 Aligned_cols=244 Identities=15% Similarity=0.180 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 017792 6 LALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ 85 (366)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~ 85 (366)
+.+..+++.|++.+.. .....++|||++.||.+++ |+++|++++|+|+||+|||||+++++..+.+.
T Consensus 164 ~~~~~~~~~~~~~~~~-----------~~~~~~i~tG~~~LD~~~g--Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~ 230 (454)
T 2r6a_A 164 DILVQTYDNIEMLHNR-----------DGEITGIPTGFTELDRMTS--GFQRSDLIIVAARPSVGKTAFALNIAQNVATK 230 (454)
T ss_dssp HHHHHHHHHHHHHHSC-----------CCCCCSBCCSCHHHHHHHS--SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-----------CCCCCCCCCCcHHHHhhcC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3456666667665432 2456899999999999996 89999999999999999999999999999874
Q ss_pred -CCeEEEEeCCCCCCHHH----HhhcccccC-------------------------cceecC--CCCHHHHHHHHHHHHh
Q 017792 86 -GGYCVFIDAEHALDPSL----AETIGVKTE-------------------------NLLLAQ--PDCGEQALSLVDTLIR 133 (366)
Q Consensus 86 -gg~vl~id~e~~~~~~~----~~~ig~~~~-------------------------~~~~~~--~~~~e~~l~~~~~~~~ 133 (366)
+..|+|++.|.+..... +...+++++ ++++.. ..+..++...+..+..
T Consensus 231 ~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~ 310 (454)
T 2r6a_A 231 TNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQ 310 (454)
T ss_dssp SSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999998765322 222344332 223322 2478888888888887
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCe-eeccC
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPT-EVTCG 212 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~-~~~~g 212 (366)
..+++++|||+++.+.... ... .+. ....+.++..|+.|+ ++.|++||+++|.++..+...-..|. ....+
T Consensus 311 ~~~~~livID~l~~~~~~~-~~~-~~~---~~~i~~i~~~Lk~lA---ke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~ 382 (454)
T 2r6a_A 311 ESGLGMIVIDYLQLIQGSG-RSK-ENR---QQEVSEISRSLKALA---RELEVPVIALSQLSRSVEQRQDKRPMMSDIRE 382 (454)
T ss_dssp TTCCCEEEEECGGGSCCSC-C-----C---HHHHHHHHHHHHHHH---HHHTCCEEEEECCCTTSTTC---CCCTHHHHT
T ss_pred HcCCCEEEEccHHHhccCC-CCC-CCH---HHHHHHHHHHHHHHH---HHhCCeEEEEecCCcccccCCCCCCcHHHhhc
Confidence 7789999999999987321 111 011 122233444444444 66799999999988764431000121 11234
Q ss_pred CceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCCchhh
Q 017792 213 GNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESE 274 (366)
Q Consensus 213 G~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~ 274 (366)
+..+++.||.++.|.+.+.+....+..+ .+.+.+.|||.++. ..+.+.|.....++.+
T Consensus 383 Sg~ie~~aD~vi~l~r~~~~~~~~~~~~-~~~l~i~K~R~G~~---g~v~l~f~~~~~~f~~ 440 (454)
T 2r6a_A 383 SGSIEQDADIVAFLYRDDYYNKDSENKN-IIEIIIAKQRNGPV---GTVQLAFIKEYNKFVN 440 (454)
T ss_dssp TCSHHHHCSEEEEEEETTC-------CC-EEEEEEEEESSSCC---EEEEEEEETTTTEEEC
T ss_pred cchhHhhCCEEEEEecccccCcccCCCC-eEEEEEecccCCCC---eEEEEEEEcCccEEeC
Confidence 5569999999999999876533221123 44799999998876 4567777666554433
No 24
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=99.91 E-value=1.8e-22 Score=199.77 Aligned_cols=223 Identities=17% Similarity=0.144 Sum_probs=156.2
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHh----hccccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAE----TIGVKT 110 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~----~ig~~~ 110 (366)
...++|||++.||.++| |+++|+++.|.|+||+|||||+++++..+...+.+|+|++.|++..+...+ ..+++.
T Consensus 176 ~~~gi~TG~~~LD~~lg--Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~~~~~~i~~ 253 (444)
T 3bgw_A 176 NITGVPSGFTELDRMTY--GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINA 253 (444)
T ss_dssp SCCSBCCSCHHHHHHHS--SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHHHHHSCCCH
T ss_pred CCCCcCCCcHHHHhhcC--CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHcCCCH
Confidence 46799999999999996 999999999999999999999999999998888899999999987753221 223221
Q ss_pred ---------------------------CcceecC--CCCHHHHHHHHHHHHhcCCce--EEEEecccccCCCCccCCccc
Q 017792 111 ---------------------------ENLLLAQ--PDCGEQALSLVDTLIRSGSVD--VVVVDSVAALVPKGELDGEMG 159 (366)
Q Consensus 111 ---------------------------~~~~~~~--~~~~e~~l~~~~~~~~~~~~~--lvviDsl~~l~~~~~l~~~~g 159 (366)
.++++.. ..++.++...+..+....+++ +||||+++.+.... . . .
T Consensus 254 ~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~-~-~--~ 329 (444)
T 3bgw_A 254 QKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAK-A-N--D 329 (444)
T ss_dssp HHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSC-S-S--S
T ss_pred HHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCC-C-C--C
Confidence 1223333 247888988888887777899 99999999886321 1 1 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCccc
Q 017792 160 DAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEET 238 (366)
Q Consensus 160 ~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~ 238 (366)
.+ ...+...++.|...+++.|++||+++|.++..+...-..|.. ...++.++++.||.++.|.+.+.+....+.
T Consensus 330 --~r---~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r~~~~~~~~~~ 404 (444)
T 3bgw_A 330 --SR---TNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESES 404 (444)
T ss_dssp --CH---HHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCBGGGTCTTCSS
T ss_pred --CH---HHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEeccccccccccC
Confidence 11 122334445555555778999999999987654311112221 134455699999999999987654322222
Q ss_pred cccEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 239 IGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 239 ~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
.+ .+.+.+.|||.++. ..+.+.|.....++
T Consensus 405 ~~-~~~l~i~K~R~G~~---g~v~l~f~~~~~rf 434 (444)
T 3bgw_A 405 KN-IVEVIIAKHRDGPV---GTVSLAFIKEYGNF 434 (444)
T ss_dssp TT-EEEEEEEEESSSCC---EEEEEEEETTTTEE
T ss_pred CC-eEEEEEEcccCCCC---eEEEEEEEcCccEE
Confidence 23 34799999998876 45667765554433
No 25
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.89 E-value=3e-22 Score=180.12 Aligned_cols=203 Identities=22% Similarity=0.287 Sum_probs=141.5
Q ss_pred CcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCcce
Q 017792 37 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENLL 114 (366)
Q Consensus 37 ~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~~~ 114 (366)
++++||++.||.+++ ||+++|++++|+||||||||||+++++..+.+.++.++|++.+..... .+...+++.++.+.
T Consensus 3 ~~i~tg~~~Ld~~~~-ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQ-GGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYI 81 (235)
T ss_dssp CEECCSCHHHHGGGT-TSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGB
T ss_pred ccccCCchHHHHHhc-CCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHh
Confidence 589999999999998 999999999999999999999999999998888889999998875432 22335666554321
Q ss_pred -----e-------------cCCCCHHHHHHHHHHHHhcCCce--EEEEecccccCCCCccCCccchhhHHHHHHHHHHHH
Q 017792 115 -----L-------------AQPDCGEQALSLVDTLIRSGSVD--VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQAL 174 (366)
Q Consensus 115 -----~-------------~~~~~~e~~l~~~~~~~~~~~~~--lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L 174 (366)
+ ....+..++...+...+...+++ ++++|+++.+.... .. ..+.+...|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d-----~~------~~~~~~~~l 150 (235)
T 2w0m_A 82 EKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK-----PA------MARKISYYL 150 (235)
T ss_dssp TTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC-----GG------GHHHHHHHH
T ss_pred hCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC-----HH------HHHHHHHHH
Confidence 1 11226677776666666556788 99999999876211 01 123344444
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCC
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAP 254 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~ 254 (366)
+.+. ++.|++||+++|..+. +. +. . + ..+.++||.++.|++... .+ ...+.+.+.|+|.++
T Consensus 151 ~~~~---~~~~~~vi~~~h~~~~-~~----~~---~-~-~~~~~~~d~vi~l~~~~~--~~----~~~r~l~v~K~r~~~ 211 (235)
T 2w0m_A 151 KRVL---NKWNFTIYATSQYAIT-TS----QA---F-G-FGVEHVADGIIRFRRMIR--NG----ELHRYILIEKMRQTD 211 (235)
T ss_dssp HHHH---HHTTEEEEEEEC---------------------CHHHHCSEEEEEEEEEE--TT----EEEEEEEEEEETTCC
T ss_pred HHHH---HhCCCeEEEEeccCcc-cc----cc---c-c-cchheeeeEEEEEEEEec--CC----cEEEEEEEEeccCCc
Confidence 4443 5679999999998742 10 00 0 1 348889999999997642 11 124479999999887
Q ss_pred CC-CeeEEEEEeCC-CCCc
Q 017792 255 PF-KTAQFELEFGK-GISR 271 (366)
Q Consensus 255 ~~-~~~~~~i~~~~-Gi~~ 271 (366)
+. ....|.|. +. |+..
T Consensus 212 ~~~~~~~f~i~-~~~Gi~~ 229 (235)
T 2w0m_A 212 HDKHVWEIDIV-NGKGIVL 229 (235)
T ss_dssp CCCSCEEEEEE-TTTEEEE
T ss_pred ccceeEEEEEc-CCCCeEE
Confidence 54 67889998 66 8753
No 26
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.89 E-value=3.2e-22 Score=182.20 Aligned_cols=209 Identities=20% Similarity=0.214 Sum_probs=142.4
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEeCCCCCCH--HHHhhccccc
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALDP--SLAETIGVKT 110 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~-~~gg~vl~id~e~~~~~--~~~~~ig~~~ 110 (366)
-.+++++||++.||.+|+ ||+++|++++|+||||||||||+++++.... ..++.++|++.+..... ...+.+|+.+
T Consensus 7 ~~~~~i~tg~~~lD~~l~-Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 85 (251)
T 2ehv_A 7 QPVRRVKSGIPGFDELIE-GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDF 85 (251)
T ss_dssp -CCCEECCSCTTTGGGTT-TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCH
T ss_pred cccceeecCCHhHHHHhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCCh
Confidence 467899999999999999 9999999999999999999999999996554 55667789988765442 3456677776
Q ss_pred Ccc------ee------------------cCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHH
Q 017792 111 ENL------LL------------------AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQ 166 (366)
Q Consensus 111 ~~~------~~------------------~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ 166 (366)
++. .+ ..+...++....+...++..+++++++|++.+..... .+ . ..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~--~d----~---~~ 156 (251)
T 2ehv_A 86 EKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL--EE----E---RK 156 (251)
T ss_dssp HHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS--SS----G---GG
T ss_pred HHHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhc--CC----H---HH
Confidence 542 11 1122345556666666667789999999998876211 01 0 01
Q ss_pred HHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeec-eEEEEEEEeceeecCccccccEEEE
Q 017792 167 ARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYA-SVRLNIKRIGLVKKGEETIGSQIAV 245 (366)
Q Consensus 167 ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~a-d~~i~l~~~~~~~~~~~~~g~~~~l 245 (366)
.+ ..+..+.+.+++.|+|||+++|..+.... ...+..+.++| |.++.|++.. ..+ ...+.+
T Consensus 157 ~~---~~l~~l~~~l~~~g~tii~vtH~~~~~~~---------~~~~~~i~~~~aD~vi~l~~~~--~~~----~~~r~l 218 (251)
T 2ehv_A 157 IR---EVLLKLNTILLEMGVTTILTTEAPDPQHG---------KLSRYGIEEFIARGVIVLDLQE--KNI----ELKRYV 218 (251)
T ss_dssp HH---HHHHHHHHHHHHHCCEEEEEECCC----C---------CSSSSSCGGGGCSEEEEEEEEE--CSS----SEEEEE
T ss_pred HH---HHHHHHHHHHHHCCCeEEEEECCCCCCcc---------cccccChhhEeeeEEEEEeeec--cCC----eeEEEE
Confidence 11 23455555556779999999998776310 11223367788 9999998643 111 234478
Q ss_pred EEEecCCCCCC-CeeEEEEEeCCCCCc
Q 017792 246 KIVKNKLAPPF-KTAQFELEFGKGISR 271 (366)
Q Consensus 246 ~v~K~r~~~~~-~~~~~~i~~~~Gi~~ 271 (366)
.+.|+|..++. ....|.|. +.|+..
T Consensus 219 ~i~K~r~~~~~~~~~~~~i~-~~Gi~v 244 (251)
T 2ehv_A 219 LIRKMRETRHSMKKYPFEIG-PNGIVV 244 (251)
T ss_dssp EEEEETTCCCCCBEEEEEEE-TTEEEE
T ss_pred EEEEccCCCcCCceEEEEEC-CCCeEE
Confidence 99999987654 56788898 788753
No 27
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.86 E-value=2.2e-20 Score=187.96 Aligned_cols=215 Identities=13% Similarity=0.141 Sum_probs=149.9
Q ss_pred CCCCcccC-ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHH----Hhhcc
Q 017792 34 RHVPVVST-GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSL----AETIG 107 (366)
Q Consensus 34 ~~~~~i~T-G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~----~~~ig 107 (366)
....++|| |++.||.+|| |+++|++++|.|+||+|||||+++++..+... +..|+|++.|++..+.. +...+
T Consensus 219 ~~~~~i~t~G~~~LD~~lg--Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~ 296 (503)
T 1q57_A 219 EESVGLLFSGCTGINDKTL--GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNR 296 (503)
T ss_dssp SCTTCSCCSSCTTHHHHHC--CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTT
T ss_pred cccCCccccchhhhhHhhc--ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcC
Confidence 35679999 9999999996 89999999999999999999999999999876 77999999998765321 23334
Q ss_pred cccC--------------------------cceecCC---CCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCcc
Q 017792 108 VKTE--------------------------NLLLAQP---DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEM 158 (366)
Q Consensus 108 ~~~~--------------------------~~~~~~~---~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~ 158 (366)
++.. ++.+... .+.++++..+..+....++++||||+++.+... . .. .
T Consensus 297 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~-~-~~-~ 373 (503)
T 1q57_A 297 VRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSA-S-GE-S 373 (503)
T ss_dssp SCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSC-C-SC-C
T ss_pred CChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCC-C-CC-C
Confidence 4322 2344433 578899999988888888999999999988631 1 10 0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc----CCCCe-eeccCCceeeeeceEEEEEEEeceee
Q 017792 159 GDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG----FGGPT-EVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 159 g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~----~~~~~-~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
. ..+.+...++.|...++++|++||+++|.++ ..... ...|. ....++..+++.||.+|.|.+.+.
T Consensus 374 ~------~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r-~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r~~~-- 444 (503)
T 1q57_A 374 D------ERKMIDNLMTKLKGFAKSTGVVLVVICHLKN-PDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ-- 444 (503)
T ss_dssp C------HHHHHHHHHHHHHHHHHHHTCEEEEEEECCC-CSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEECSS--
T ss_pred C------HHHHHHHHHHHHHHHHHHHCCeEEEEEcCCc-hhccCccccCCCCChhhhccchHhhecCcEEEEEEeCCc--
Confidence 1 1123344555555555778999999999987 22100 01121 123456679999999999998642
Q ss_pred cCccccccEEEEEEEecC-CCCCCCeeEE-EEEeCCC
Q 017792 234 KGEETIGSQIAVKIVKNK-LAPPFKTAQF-ELEFGKG 268 (366)
Q Consensus 234 ~~~~~~g~~~~l~v~K~r-~~~~~~~~~~-~i~~~~G 268 (366)
.+ ..+ .+.+.+.||| .++. ..+ .+.|...
T Consensus 445 -~~-~~~-~~~l~v~K~R~~G~~---g~~~~l~f~~~ 475 (503)
T 1q57_A 445 -GD-MPN-LVLVRILKCRFTGDT---GIAGYMEYNKE 475 (503)
T ss_dssp -SS-CTT-EEEEEEEEETTTCCC---EEEEEEEECTT
T ss_pred -CC-CCC-eEEEEEEeccCCCCC---CceEEEEEEcC
Confidence 11 113 4479999999 4765 333 5566544
No 28
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.85 E-value=3.5e-21 Score=179.30 Aligned_cols=214 Identities=15% Similarity=0.239 Sum_probs=129.4
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----------CCeEEEEeCCCCCCH--HH
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----------GGYCVFIDAEHALDP--SL 102 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~----------gg~vl~id~e~~~~~--~~ 102 (366)
..+.++||++.||.+|+ |+++|++++|+||||||||||++++++.+... ++.++|++.|+.... .+
T Consensus 9 ~~~~i~tg~~~ld~~lg--gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r 86 (279)
T 1nlf_A 9 ILEAFAAAPPPLDYVLP--NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHR 86 (279)
T ss_dssp HHHHHHSCCCCCCEEET--TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHH
T ss_pred HHHHhcCCCCChheeEC--CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHH
Confidence 35689999999999996 89999999999999999999999999977642 467999999987643 23
Q ss_pred Hhhccccc---------CcceecCC-------CCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHH
Q 017792 103 AETIGVKT---------ENLLLAQP-------DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQ 166 (366)
Q Consensus 103 ~~~ig~~~---------~~~~~~~~-------~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ 166 (366)
+..+++.+ +++.+.+. .+.. .+..+..++. +++++++|+++++.+..+ ...
T Consensus 87 ~~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g-~~~~i~~l~~--~~~livlDe~~~~~~~d~-----~~~----- 153 (279)
T 1nlf_A 87 LHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPE-WFDGLKRAAE--GRRLMVLDTLRRFHIEEE-----NAS----- 153 (279)
T ss_dssp HHHHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHH-HHHHHHHHHT--TCSEEEEECGGGGCCSCT-----TCH-----
T ss_pred HHHHHhhcChhhhhhccCceEEeecCCCCcccCCHH-HHHHHHHhcC--CCCEEEECCHHHhcCCCc-----Cch-----
Confidence 44455443 23333221 1222 3455555554 589999999999864211 111
Q ss_pred HHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCe--eeccCCceeeeeceEEEEEEEeceeec--------Cc
Q 017792 167 ARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPT--EVTCGGNALKFYASVRLNIKRIGLVKK--------GE 236 (366)
Q Consensus 167 ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~--~~~~gG~~l~~~ad~~i~l~~~~~~~~--------~~ 236 (366)
+.+...++.|...+++.|+|||+++|.++.... ++.+. ....|+.++. |.++.+........ ++
T Consensus 154 -~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~~--~g~~~~~~~~~g~~~l~---d~v~~~~~~~~~~~~~~~~~gi~~ 227 (279)
T 1nlf_A 154 -GPMAQVIGRMEAIAADTGCSIVFLHHASKGAAM--MGAGDQQQASRGSSVLV---DNIRWQSYLSSMTSAEAEEWGVDD 227 (279)
T ss_dssp -HHHHHHHHHHHHHHHHHCCEEEEEEEC----------------------CTG---GGCSCEEEEEECCHHHHHHTTCCT
T ss_pred -HHHHHHHHHHHHHHHHcCCEEEEEecCCCcccc--cCCchhhhhccchhhhc---cchhhhhhccCCCHHHHHHhCCCh
Confidence 122233444444445679999999999875321 12111 1234444453 33333332221111 12
Q ss_pred cccccEEEEEEEecCCCCCCCeeEEEEEeCCCCC
Q 017792 237 ETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGIS 270 (366)
Q Consensus 237 ~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~ 270 (366)
+..+..+.+.+.|||++||+....|.+. +.|+.
T Consensus 228 ~~~~~~~~~~v~K~~~~~~~~~~~~~~~-~~G~l 260 (279)
T 1nlf_A 228 DQRRFFVRFGVSKANYGAPFADRWFRRH-DGGVL 260 (279)
T ss_dssp TSGGGEEEEEEEECSSSSCCCCEEEEEC-GGGCE
T ss_pred hhcCcEEEeeeccccCCCCCCceEEEEc-CCeeE
Confidence 2345566799999999999877667666 56654
No 29
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.84 E-value=7.5e-20 Score=185.04 Aligned_cols=207 Identities=18% Similarity=0.195 Sum_probs=150.9
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccC-
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTE- 111 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~- 111 (366)
.+++++||++.||.+|+ ||+++|++++|+|+||||||||++++++...+.|+.++|+.+++.... ..+.++|++.+
T Consensus 259 ~~~~l~~g~~~ld~vL~-g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~ 337 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEE 337 (525)
T ss_dssp CCCEECCSCHHHHHHTT-SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHH
T ss_pred ccceeecChHHHHHHhC-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHH
Confidence 56799999999999999 999999999999999999999999999998887778899998876432 22334555421
Q ss_pred -----cceecC----CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 017792 112 -----NLLLAQ----PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 182 (366)
Q Consensus 112 -----~~~~~~----~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~ 182 (366)
.+.+.. ..+..+....+...+...+++++++|+++.+... .. + .+.+ ..+..+...++
T Consensus 338 ~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~--~~---~-----~~~~---~~i~~ll~~l~ 404 (525)
T 1tf7_A 338 MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARG--VS---N-----NAFR---QFVIGVTGYAK 404 (525)
T ss_dssp HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSS--SC---H-----HHHH---HHHHHHHHHHH
T ss_pred HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhh--CC---h-----HHHH---HHHHHHHHHHH
Confidence 122221 2466776666666666678999999988888642 11 1 1222 44556666667
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC-CCeeEE
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP-FKTAQF 261 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~-~~~~~~ 261 (366)
+.|+|||+++|.....+. +.+| +..+.++||+++.|++++. .+ ..++.+.++|+|.++. ....+|
T Consensus 405 ~~g~tvilvsh~~~~~~~--~~~~------~~~l~~~~D~vi~L~~ge~--~~----~~~R~l~v~K~R~~~~~~~~~~f 470 (525)
T 1tf7_A 405 QEEITGLFTNTSDQFMGA--HSIT------DSHISTITDTIILLQYVEI--RG----EMSRAINVFKMRGSWHDKAIREF 470 (525)
T ss_dssp HTTCEEEEEEECSSSSCC--CSSC------SSCCTTTCSEEEEEEEEEE--TT----EEEEEEEEEEESSSCCCCBCEEE
T ss_pred hCCCEEEEEECcccccCc--cccc------CcccceeeeEEEEEEEEEe--CC----EEEEEEEEEECCCCCCCCCEEEE
Confidence 789999999998754221 1111 1347899999999998752 22 2345799999999987 578899
Q ss_pred EEEeCCCCC
Q 017792 262 ELEFGKGIS 270 (366)
Q Consensus 262 ~i~~~~Gi~ 270 (366)
.|. +.|+.
T Consensus 471 ~i~-~~Gi~ 478 (525)
T 1tf7_A 471 MIS-DKGPD 478 (525)
T ss_dssp EEC-SSCEE
T ss_pred EEc-CCCEE
Confidence 998 89987
No 30
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.81 E-value=9.3e-19 Score=164.11 Aligned_cols=206 Identities=14% Similarity=0.140 Sum_probs=126.7
Q ss_pred CCCCcccC-ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHHHhhc-----
Q 017792 34 RHVPVVST-GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSLAETI----- 106 (366)
Q Consensus 34 ~~~~~i~T-G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~~~~i----- 106 (366)
....++|| |++.||.+++ |+++|++++|+|+||+|||||++++++.+.+. |..|+|++.+..... +.+++
T Consensus 12 ~~~~~i~t~g~~~Ld~i~~--~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~-~~~r~~~~~~ 88 (296)
T 1cr0_A 12 EESVGLLFSGCTGINDKTL--GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEE-TAEDLIGLHN 88 (296)
T ss_dssp CCCCCBCCCSCTTHHHHHC--SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHH-HHHHHHHHHT
T ss_pred CCcCCcccCCHHHHHHHhc--CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHH-HHHHHHHHHc
Confidence 35678999 9999999985 99999999999999999999999999999887 448999998864322 11111
Q ss_pred cccc--------------------------CcceecC---CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCc
Q 017792 107 GVKT--------------------------ENLLLAQ---PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGE 157 (366)
Q Consensus 107 g~~~--------------------------~~~~~~~---~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~ 157 (366)
+... .++.+.. ..++.++...+.......+++++++|+++.+... .. .
T Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~--~~-~ 165 (296)
T 1cr0_A 89 RVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSA--SG-E 165 (296)
T ss_dssp TCCGGGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------
T ss_pred CCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCC--CC-C
Confidence 1110 1222332 2567887777765556678999999999987621 00 0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccc---ccCCCCe-eeccCCceeeeeceEEEEEEEeceee
Q 017792 158 MGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLST---FGFGGPT-EVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 158 ~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~---~~~~~~~-~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
.... ...+.+...|+.+. ++.|+|||+++|..+.-+. ..-..|. ....|+..+.++||+++.|.++...
T Consensus 166 ~d~~---~~~~~i~~~L~~la---~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~~- 238 (296)
T 1cr0_A 166 SDER---KMIDNLMTKLKGFA---KSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQG- 238 (296)
T ss_dssp ---C---HHHHHHHHHHHHHH---HHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC----
T ss_pred CCHH---HHHHHHHHHHHHHH---HHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCccc-
Confidence 0110 12233444455554 4579999999999631000 0000111 1223444688999999999987532
Q ss_pred cCccccccEEEEEEEecCC-CCCC
Q 017792 234 KGEETIGSQIAVKIVKNKL-APPF 256 (366)
Q Consensus 234 ~~~~~~g~~~~l~v~K~r~-~~~~ 256 (366)
++ .+ .+.+.+.|+|+ ++.+
T Consensus 239 ~~---~~-~~~l~i~K~R~~g~~g 258 (296)
T 1cr0_A 239 DM---PN-LVLVRILKCRFTGDTG 258 (296)
T ss_dssp --------CEEEEEEEETTTCCCE
T ss_pred CC---CC-eEEEEEEccccCCCCC
Confidence 11 12 34799999996 7653
No 31
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.73 E-value=5.4e-17 Score=164.12 Aligned_cols=201 Identities=15% Similarity=0.157 Sum_probs=131.9
Q ss_pred CCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHH--HHHHhhcCCeEEEEeCCCCCC--HHHHhhccc
Q 017792 33 PRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHV--IAEAQRQGGYCVFIDAEHALD--PSLAETIGV 108 (366)
Q Consensus 33 ~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l--~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~ 108 (366)
...+.+++||++.||.+.. ||+++|++++|+||||||||||++++ .+...+ +..++|+++++... ...++.+|+
T Consensus 15 ~~~~~~~~~g~~~Ld~i~~-G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-~~g~i~v~g~~~~~~~~~~~~~~g~ 92 (525)
T 1tf7_A 15 HQAIAKMRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-DEPGVFVTFEETPQDIIKNARSFGW 92 (525)
T ss_dssp CSSCCEECCCCTTHHHHTT-SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSSCHHHHHHHHGGGTC
T ss_pred ccccccccCCchhHHHhcC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHHHHHHHHHcCC
Confidence 3457899999999999998 89999999999999999999999995 454444 44479999887432 234667898
Q ss_pred ccCcce------ecC------------CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHH
Q 017792 109 KTENLL------LAQ------------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM 170 (366)
Q Consensus 109 ~~~~~~------~~~------------~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l 170 (366)
++|++. ... .....+.+......++.++++++++|++.++.+...++ . ...
T Consensus 93 ~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD-----~---~~~--- 161 (525)
T 1tf7_A 93 DLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDAS-----S---VVR--- 161 (525)
T ss_dssp CHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCH-----H---HHH---
T ss_pred ChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCH-----H---HHH---
Confidence 887542 111 11234455555555666789999999999987532111 1 112
Q ss_pred HHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCcee-eeeceEEEEEEEeceeecCccccccEEEEEEEe
Q 017792 171 SQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNAL-KFYASVRLNIKRIGLVKKGEETIGSQIAVKIVK 249 (366)
Q Consensus 171 ~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l-~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K 249 (366)
..+..+.+.+++.|+|||+++|....+.. . ....+ .++||+++.|+++.. .+. ....+.+.|
T Consensus 162 -~~l~~ll~~l~~~g~tvl~itH~~~~~~~-------~---~~~~i~~~laD~vi~L~~~~~--~G~----~~r~l~~~k 224 (525)
T 1tf7_A 162 -RELFRLVARLKQIGATTVMTTERIEEYGP-------I---ARYGVEEFVSDNVVILRNVLE--GER----RRRTLEILK 224 (525)
T ss_dssp -HHHHHHHHHHHHHTCEEEEEEECSSSSSC-------S---STTSCHHHHCSEEEEEEEECS--TTC----CEEEEEEEE
T ss_pred -HHHHHHHHHHHHCCCEEEEEecCCCCccc-------c---ccccceeeeeeEEEEEEEEcc--CCc----eeEEEEEEE
Confidence 23444555555679999999998765321 0 00112 566999999998652 222 233567788
Q ss_pred cCCCCC-CCeeEEEE
Q 017792 250 NKLAPP-FKTAQFEL 263 (366)
Q Consensus 250 ~r~~~~-~~~~~~~i 263 (366)
.|..++ .....|.+
T Consensus 225 ~r~~~~~~~~~~~~i 239 (525)
T 1tf7_A 225 LRGTSHMKGEYPFTI 239 (525)
T ss_dssp ETTSCCCCSEEEEEE
T ss_pred CCCCCCCCceEEEEE
Confidence 774432 12344544
No 32
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.68 E-value=4.1e-16 Score=142.99 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=65.5
Q ss_pred cccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccC
Q 017792 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTE 111 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~ 111 (366)
.+|||++.||.+|+ ||+|+|++++|.|.||+|||||+.+++......|.+|+|+..+++... ..++.+|++++
T Consensus 2 ~i~tGi~~LD~~l~-GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~~G~dl~ 76 (260)
T 3bs4_A 2 SLSWEIEELDREIG-KIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPLQLIIRILSRFGVDVI 76 (260)
T ss_dssp CBCCSSHHHHHHHC-CBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHTTCCHH
T ss_pred cCccCcHHHHHHhC-CCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHcCCCHH
Confidence 58999999999999 999999999999999999999999999999888999999999988774 44666777654
No 33
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.62 E-value=1.5e-16 Score=152.57 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=112.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H----HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~----~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... . .+++.+|+.+|+..++...|+.+.+.+.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~-I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~ 129 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS-VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP 129 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceE-EEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHH
Confidence 7899999999999999999999999988887776 6677665432 1 2356799999999888888998887654
Q ss_pred HHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
....... -...+-++....-. ..++++ |++|+...||+++.. +..+.
T Consensus 130 ~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~-~~~LSG--GqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL 206 (366)
T 3tui_C 130 LELDNTPKDEVKRRVTELLSLVGLGDKHDSY-PSNLSG--GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206 (366)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHTCGGGTTCC-TTTSCH--HHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 3211000 00111112222222 245555 889999998887654 55555
Q ss_pred HHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 179 HSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 179 ~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++ +.|+|||+++|..+. +..+||+++.|++++++..+.
T Consensus 207 ~~l~~~~g~Tii~vTHdl~~------------------~~~~aDrv~vl~~G~iv~~g~ 247 (366)
T 3tui_C 207 KDINRRLGLTILLITHEMDV------------------VKRICDCVAVISNGELIEQDT 247 (366)
T ss_dssp HHHHHHSCCEEEEEESCHHH------------------HHHHCSEEEEEETTEEEECCB
T ss_pred HHHHHhCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 5554 469999999997764 566899999999888777653
No 34
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.60 E-value=2.4e-16 Score=152.01 Aligned_cols=159 Identities=17% Similarity=0.221 Sum_probs=111.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... +...+.+|+++|+..+++..|+.+++.+......
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~-I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~ 104 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD-LFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG 104 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTT
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeE-EEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcC
Confidence 6799999999999999999999999998888776 6777765432 2334679999999998888899888765332110
Q ss_pred cC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-h
Q 017792 134 SG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-S 182 (366)
Q Consensus 134 ~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~ 182 (366)
.. -...+-++.+..-. ..++++ |++|+...||+++.. ++.+.+.+ +
T Consensus 105 ~~~~~~~~~v~~~l~~~~L~~~~~r~-p~~LSG--GqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~ 181 (381)
T 3rlf_A 105 AKKEVINQRVNQVAEVLQLAHLLDRK-PKALSG--GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (381)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTCC-GGGSCH--HHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCC-hhHCCH--HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH
Confidence 00 00111122222222 245555 899999999998764 55555555 3
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.|+|+|+++|..++ +..+||+++.|++++++..+
T Consensus 182 ~~g~tii~vTHd~~e------------------a~~~aDri~vl~~G~i~~~g 216 (381)
T 3rlf_A 182 RLGRTMIYVTHDQVE------------------AMTLADKIVVLDAGRVAQVG 216 (381)
T ss_dssp HHCCEEEEECSCHHH------------------HHHHCSEEEEEETTEEEEEE
T ss_pred hCCCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEEe
Confidence 469999999998765 45578888888887765543
No 35
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.59 E-value=4.4e-16 Score=144.46 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=105.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC-C----HHHHhhcccccCcce-ecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D----PSLAETIGVKTENLL-LAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~-~----~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.... . ..+++.+|+.+|++. .....++.+.+.+.
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~-I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~ 109 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGR-ILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG 109 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeE-EEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHH
Confidence 7899999999999999999999999988887776 677776542 1 235678999999863 22356777766543
Q ss_pred HHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
....... -...+-++.+..-. ...+++ |++|+...||+++.. +..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LSg--GqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l 186 (275)
T 3gfo_A 110 AVNMKLPEDEIRKRVDNALKRTGIEHLKDKP-THCLSF--GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186 (275)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHTTCGGGTTSB-GGGSCH--HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 2210000 00000011211111 234444 888888888877654 55555
Q ss_pred HHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 179 HSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 179 ~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
..++ +.|+|||+++|..+. +..+||+++.|+++.++..+
T Consensus 187 ~~l~~~~g~tvi~vtHdl~~------------------~~~~~drv~~l~~G~i~~~g 226 (275)
T 3gfo_A 187 VEMQKELGITIIIATHDIDI------------------VPLYCDNVFVMKEGRVILQG 226 (275)
T ss_dssp HHHHHHHCCEEEEEESCCSS------------------GGGGCSEEEEEETTEEEEEE
T ss_pred HHHHhhCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEEC
Confidence 5554 559999999997764 56679999999877655443
No 36
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.59 E-value=5.6e-16 Score=142.38 Aligned_cols=156 Identities=16% Similarity=0.175 Sum_probs=105.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... ..+.+.+|+.+|+..++...|+.+.+.+.....
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~-I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~ 116 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI-VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY 116 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc
Confidence 7799999999999999999999999988877776 5666654322 345677999999988877778888876643221
Q ss_pred hcCC----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~~----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
.... ...+-++....-. ...+++ |++|+...||+++.. +..+...++
T Consensus 117 ~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 117 ASSSSEIEEMVERATEIAGLGEKIKDR-VSTYSK--GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp CCCHHHHHHHHHHHHHHHCCGGGGGSB-GGGCCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCchHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 1000 0001111111111 234444 788888888877653 555665565
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+.|+|||+++|..+. +..+||+++.|.++.++
T Consensus 194 ~~g~tiiivtHd~~~------------------~~~~~d~v~~l~~G~i~ 225 (256)
T 1vpl_A 194 QEGLTILVSSHNMLE------------------VEFLCDRIALIHNGTIV 225 (256)
T ss_dssp HTTCEEEEEECCHHH------------------HTTTCSEEEEEETTEEE
T ss_pred hCCCEEEEEcCCHHH------------------HHHHCCEEEEEECCEEE
Confidence 669999999997654 45578998888766543
No 37
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.59 E-value=2.7e-16 Score=150.67 Aligned_cols=159 Identities=18% Similarity=0.209 Sum_probs=109.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC-----CCHHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-----LDPSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~-----~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.. ..+...+.+|+++|+..+++..|+.+++.+..
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~-I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l 105 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE-ISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGL 105 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEE-EEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcE-EEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHH
Confidence 7799999999999999999999999998888776 66666543 11244567999999998888889888765421
Q ss_pred HHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH-HH
Q 017792 130 TLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK-LS 178 (366)
Q Consensus 130 ~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~-L~ 178 (366)
...... -...+-++.+..-. ..++++ |++|+...||+++.. ++. +.
T Consensus 106 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~-~~~LSG--Gq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~ 182 (359)
T 3fvq_A 106 GNGKGRTAQERQRIEAMLELTGISELAGRY-PHELSG--GQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMI 182 (359)
T ss_dssp TTSSCCSHHHHHHHHHHHHHHTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred HHcCCChHHHHHHHHHHHHHcCCchHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 100000 00111122222222 245555 889998888887654 443 44
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..++.|+|||+++|..++ +..+||+++.|++++++..+
T Consensus 183 ~~~~~~g~tvi~vTHd~~e------------------a~~~aDri~vl~~G~i~~~g 221 (359)
T 3fvq_A 183 AALRANGKSAVFVSHDREE------------------ALQYADRIAVMKQGRILQTA 221 (359)
T ss_dssp HHHHHTTCEEEEECCCHHH------------------HHHHCSEEEEEETTEEEEEE
T ss_pred HHHHhCCCEEEEEeCCHHH------------------HHHHCCEEEEEECCEEEEEe
Confidence 5556789999999998765 45578888888877765543
No 38
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.58 E-value=2.1e-15 Score=136.84 Aligned_cols=157 Identities=18% Similarity=0.246 Sum_probs=104.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-H----HHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S----LAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~----~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... . . +.+.+|+.+|+..+++..++.+.+.+
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~ 106 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE-VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL 106 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceE-EEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHH
Confidence 7799999999999999999999999988887776 6777654322 1 1 23469999999988888888887655
Q ss_pred HHHHHhcCC-------------ceEEEEec-ccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 128 VDTLIRSGS-------------VDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 128 ~~~~~~~~~-------------~~lvviDs-l~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
......... ...+-++. .... +..++++ |++|+...||+++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSg--Gq~QRv~iAral~~~p~llllDEPts~LD~~~~~~ 183 (235)
T 3tif_A 107 PLIFKYRGAMSGEERRKRALECLKMAELEERFANH-KPNQLSG--GQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183 (235)
T ss_dssp HHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTC-CGGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhC-ChhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 321110000 00000111 1011 1244555 888988888887654
Q ss_pred HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+++ .|+|||+++|..+. . .+||+++.|+++.++..
T Consensus 184 i~~~l~~l~~~~g~tvi~vtHd~~~------------------~-~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 184 IMQLLKKLNEEDGKTVVVVTHDINV------------------A-RFGERIIYLKDGEVERE 226 (235)
T ss_dssp HHHHHHHHHHHHCCEEEEECSCHHH------------------H-TTSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHH------------------H-HhCCEEEEEECCEEEEE
Confidence 5555555543 59999999997642 2 46899999987765443
No 39
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.58 E-value=3.7e-16 Score=144.16 Aligned_cols=157 Identities=13% Similarity=0.159 Sum_probs=106.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC------------C----HHHHhhcccccCcceecCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------------D----PSLAETIGVKTENLLLAQP 118 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~------------~----~~~~~~ig~~~~~~~~~~~ 118 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.... . ..+.+.+|+.+|+..++..
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 107 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA-IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSH 107 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCC
Confidence 7799999999999999999999999988877776 566665432 1 1345679999999888777
Q ss_pred CCHHHHHHHHH-HHHhcC------C----ceEEEEecc-cccCCCCccCCccchhhHHHHHHHHHHH-------------
Q 017792 119 DCGEQALSLVD-TLIRSG------S----VDVVVVDSV-AALVPKGELDGEMGDAHMAMQARLMSQA------------- 173 (366)
Q Consensus 119 ~~~e~~l~~~~-~~~~~~------~----~~lvviDsl-~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------- 173 (366)
.|+.+.+.+.. ...... . ...+-++.. .... ...+++ |++|+...||+++..
T Consensus 108 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~lllLDEPts~L 184 (262)
T 1b0u_A 108 MTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-PVHLSG--GQQQRVSIARALAMEPDVLLFDEPTSAL 184 (262)
T ss_dssp SCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-GGGSCH--HHHHHHHHHHHHHTCCSEEEEESTTTTS
T ss_pred CcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 88888876532 110000 0 000001111 1111 234554 888888888887764
Q ss_pred -------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 -------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 -------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+..+...+++.|+|||+++|..+. +..+||+++.|.++.++.
T Consensus 185 D~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~------------------~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 185 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGF------------------ARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEECSCHHH------------------HHHHCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 556666665569999999997654 556789999998765443
No 40
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.58 E-value=2.7e-15 Score=138.58 Aligned_cols=154 Identities=20% Similarity=0.216 Sum_probs=109.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+++.+++.+|+..+..+.++.+.+.+..
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 112 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGE-CHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAP 112 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCE-EEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE-EEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhh
Confidence 7899999999999999999999999998888886 6677654332 356677999999887777778887765421
Q ss_pred -----------HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHH------H-------------------
Q 017792 130 -----------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ------A------------------- 173 (366)
Q Consensus 130 -----------~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~------~------------------- 173 (366)
..+.... ++.+..-. ...+++ |++|+...||+++. .
T Consensus 113 ~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--Gq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~ 184 (266)
T 4g1u_C 113 YGGSQDRQALQQVMAQTD-----CLALAQRD-YRVLSG--GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQ 184 (266)
T ss_dssp SCSTTHHHHHHHHHHHTT-----CSTTTTSB-GGGCCH--HHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHH
T ss_pred cCcHHHHHHHHHHHHHcC-----ChhHhcCC-cccCCH--HHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHH
Confidence 1111111 11111111 234555 89999999999987 3
Q ss_pred -HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 -LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 -L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+.+.+++ .++|||+++|..+. +..+||+++.|++++++..+
T Consensus 185 ~i~~~l~~l~~~~~~tvi~vtHdl~~------------------~~~~~d~v~vl~~G~i~~~g 230 (266)
T 4g1u_C 185 HTLRLLRQLTRQEPLAVCCVLHDLNL------------------AALYADRIMLLAQGKLVACG 230 (266)
T ss_dssp HHHHHHHHHHHHSSEEEEEECSCHHH------------------HHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEEcCHHH------------------HHHhCCEEEEEECCEEEEEc
Confidence 5555555544 46899999997764 56679999999987766554
No 41
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.58 E-value=4.6e-16 Score=143.47 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=105.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.... . ..+.+.+|+.+|+..++...++.+.+.+..
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~ 125 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGE-IIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP 125 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcE-EEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHH
Confidence 7899999999999999999999999988877776 566664331 1 234677999999988777788988876532
Q ss_pred -HHHhcC------C----ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 130 -TLIRSG------S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 130 -~~~~~~------~----~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
...... . ...+-++....-. ...+++ |++|+...||+++.. +.++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LSg--GqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l 202 (263)
T 2olj_A 126 MKVRKWPREKAEAKAMELLDKVGLKDKAHAY-PDSLSG--GQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVM 202 (263)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHTTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCchHhcCC-hhhCCH--HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 110000 0 0000011111111 234444 888888888877653 55666
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
..+++.|+|||+++|..+. +..+||+++.|+++.++.
T Consensus 203 ~~l~~~g~tvi~vtHd~~~------------------~~~~~d~v~~l~~G~i~~ 239 (263)
T 2olj_A 203 KQLANEGMTMVVVTHEMGF------------------AREVGDRVLFMDGGYIIE 239 (263)
T ss_dssp HHHHHTTCEEEEECSCHHH------------------HHHHCSEEEEEETTEEEE
T ss_pred HHHHhCCCEEEEEcCCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 6555569999999997654 566789999998765543
No 42
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.57 E-value=2.7e-15 Score=135.14 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=102.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H----HH-HhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----SL-AETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~----~~-~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... . .+ .+.+++.+|+..++...++.+.+.+
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~ 105 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGK-VFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIV 105 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEE-EEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHh
Confidence 7799999999999999999999999988877776 5666654322 1 12 3679999999888777888887765
Q ss_pred HHHHHhcC------C----ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRSG------S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~~------~----~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
........ . ...+-++...... ...+++ |++|+...||+++.. +..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~ 182 (224)
T 2pcj_A 106 PMLKMGKPKKEAKERGEYLLSELGLGDKLSRK-PYELSG--GEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182 (224)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCC-GGGSCH--HHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 32211000 0 0000011111111 234444 778877777776543 5555
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
...+++.|.|||+++|..+. + .+||+++.|+++.++..
T Consensus 183 l~~l~~~g~tvi~vtHd~~~------------------~-~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 183 FLKINEGGTSIVMVTHEREL------------------A-ELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp HHHHHHTTCEEEEECSCHHH------------------H-TTSSEEEEEETTEEEEE
T ss_pred HHHHHHCCCEEEEEcCCHHH------------------H-HhCCEEEEEECCEEEEE
Confidence 55555559999999997543 3 46899988887665444
No 43
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.56 E-value=7.1e-16 Score=147.50 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=105.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. +++++....+ +...+.+|+.+|+..+++..|+.+++.+......
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~ 101 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR-ILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK 101 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEE-EEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcE-EEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC
Confidence 7799999999999999999999999988887776 6677654432 2446789999999988888899998876433211
Q ss_pred cCCc-------eEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-hcC
Q 017792 134 SGSV-------DVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS-LSQ 185 (366)
Q Consensus 134 ~~~~-------~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~-~~~ 185 (366)
.... ..+-++.+..-. ..++++ |++|+...||+++.. ++.+.+.+. +.|
T Consensus 102 ~~~~~~v~~~l~~~~L~~~~~~~-~~~LSg--Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g 178 (348)
T 3d31_A 102 IKDPKRVLDTARDLKIEHLLDRN-PLTLSG--GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK 178 (348)
T ss_dssp CCCHHHHHHHHHHTTCTTTTTSC-GGGSCH--HHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCCchHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcC
Confidence 1110 000011111111 234444 788888888876553 555555543 469
Q ss_pred cEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 186 TILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 186 ~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+|+|+++|...+ +..+||+++.|+++.++.
T Consensus 179 ~tii~vTHd~~~------------------~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 179 LTVLHITHDQTE------------------ARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp CEEEEEESCHHH------------------HHHHCSEEEEESSSCEEE
T ss_pred CEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 999999997765 444677777777665543
No 44
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.56 E-value=4.3e-15 Score=136.65 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=104.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
-+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++...|+.+.+.+..
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~ 107 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR-VYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGE 107 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGG
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHH
Confidence 37899999999999999999999999988877776 5666654322 123557999999887777778877765421
Q ss_pred HH-Hhc-----------CCce--E----EEEec--ccccCC--CCccCCccchhhHHHHHHHHHHH--------------
Q 017792 130 TL-IRS-----------GSVD--V----VVVDS--VAALVP--KGELDGEMGDAHMAMQARLMSQA-------------- 173 (366)
Q Consensus 130 ~~-~~~-----------~~~~--l----vviDs--l~~l~~--~~~l~~~~g~~~~~~~ar~l~~~-------------- 173 (366)
.. ... .... . -+++. +..... ...+++ |++|+...||+++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg--GqkQrv~iAraL~~~p~lllLDEPts~LD 185 (257)
T 1g6h_A 108 ICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSG--GQMKLVEIGRALMTNPKMIVMDEPIAGVA 185 (257)
T ss_dssp TSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCH--HHHHHHHHHHHHHTCCSEEEEESTTTTCC
T ss_pred hhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCH--HHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 10 000 0000 0 00111 111111 133444 888888888887664
Q ss_pred ------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 ------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 ------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+..+.+.+++.|+|||+++|..+. +..+||+++.|+++.++.
T Consensus 186 ~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~------------------~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 186 PGLAHDIFNHVLELKAKGITFLIIEHRLDI------------------VLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSCCST------------------TGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 556666665569999999997754 556789999888765443
No 45
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.55 E-value=2.6e-15 Score=140.93 Aligned_cols=131 Identities=15% Similarity=0.055 Sum_probs=93.2
Q ss_pred CcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC--CCCCCHHHHhhcccccCcce
Q 017792 37 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA--EHALDPSLAETIGVKTENLL 114 (366)
Q Consensus 37 ~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~--e~~~~~~~~~~ig~~~~~~~ 114 (366)
..++||++.||.+| ||+++|.+++|+||||+|||||+++++.. .+++|+|++. ++..+ .
T Consensus 104 ~~i~TGi~~LD~lL--GGi~~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE~v~--------~------ 164 (331)
T 2vhj_A 104 GELVGCSPVVAEFG--GHRYASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFGEPLS--------G------ 164 (331)
T ss_dssp TTCCSBCCEEEEET--TEEEESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBSCSST--------T------
T ss_pred hccccCcHHHHHHh--CCCCCCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecchhhhh--------h------
Confidence 45889999999999 69999999999999999999999999876 4667899988 33211 0
Q ss_pred ecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecC
Q 017792 115 LAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 194 (366)
Q Consensus 115 ~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~ 194 (366)
+. ...++.+..+...+...+ ++|||++..+.+...-...+| .+.+.+.+.++.|...+++.|+++|++++.
T Consensus 165 -~~-~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~~G-----~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 165 -YN-TDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNTTSG-----GISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp -CB-CCHHHHHHHHHHHHHHCS--EEEEECCTTTC----------------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred -hh-cCHHHHHHHHHHHHhhCC--EEEEecccccccccccccccc-----hHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 11 456777766665555544 999999999864322111112 234556677888888878889999998774
Q ss_pred C
Q 017792 195 R 195 (366)
Q Consensus 195 ~ 195 (366)
.
T Consensus 236 ~ 236 (331)
T 2vhj_A 236 T 236 (331)
T ss_dssp S
T ss_pred c
Confidence 3
No 46
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.55 E-value=1.3e-15 Score=146.35 Aligned_cols=158 Identities=16% Similarity=0.251 Sum_probs=107.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... +...+.+|+.+|+..+++..|+.+++.+......
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 104 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK-IYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRK 104 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCceE-EEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcC
Confidence 6799999999999999999999999988887776 6677654322 2234679999999988888899888766432110
Q ss_pred cCC----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-
Q 017792 134 SGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS- 182 (366)
Q Consensus 134 ~~~----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~- 182 (366)
... ...+-++.+..-. ..++++ |++|+...||+++.. ++.+.+.+.
T Consensus 105 ~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (362)
T 2it1_A 105 APREEIDKKVREVAKMLHIDKLLNRY-PWQLSG--GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK 181 (362)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCTTCC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchHhhCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH
Confidence 000 0011112221111 234555 888888888887654 555555543
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.|+|+|+++|..++ +..+||+++.|+++.++..
T Consensus 182 ~~g~tvi~vTHd~~~------------------a~~~adri~vl~~G~i~~~ 215 (362)
T 2it1_A 182 ELGITTVYVTHDQAE------------------ALAMADRIAVIREGEILQV 215 (362)
T ss_dssp HHTCEEEEEESCHHH------------------HHHHCSEEEEEETTEEEEE
T ss_pred hCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 459999999997665 4557888888887765543
No 47
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.55 E-value=6.3e-15 Score=136.20 Aligned_cols=157 Identities=17% Similarity=0.133 Sum_probs=102.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcc-eecCCCCHHHHHHHHHHH-H
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL-LLAQPDCGEQALSLVDTL-I 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~-~~~~~~~~e~~l~~~~~~-~ 132 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.......+.+.+|+.+|+. ..+...++.+.+.+.... .
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~-I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~ 108 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD-VLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY 108 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE-EEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC
Confidence 7799999999999999999999999988877776 566664432224556799999985 344567888877653211 0
Q ss_pred hcCCc--------eEEEEe--cccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSGSV--------DVVVVD--SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~~~--------~lvviD--sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
..... ..+-++ ...... ...+++ |++|+...||+++.. +..+...++
T Consensus 109 ~~~~~~~~~~~~l~~~gl~~~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 185 (266)
T 2yz2_A 109 PDRDPVPLVKKAMEFVGLDFDSFKDRV-PFFLSG--GEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185 (266)
T ss_dssp TTSCSHHHHHHHHHHTTCCHHHHTTCC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCcCCcccccCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 00000 000011 111111 134444 888888888877653 555555555
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.|.|||+++|..+. +..+||+++.|+++.++.
T Consensus 186 ~~g~tii~vtHd~~~------------------~~~~~d~v~~l~~G~i~~ 218 (266)
T 2yz2_A 186 TLGKTVILISHDIET------------------VINHVDRVVVLEKGKKVF 218 (266)
T ss_dssp HTTCEEEEECSCCTT------------------TGGGCSEEEEEETTEEEE
T ss_pred HcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 459999999997654 556789999988765443
No 48
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.55 E-value=4.3e-15 Score=142.59 Aligned_cols=158 Identities=18% Similarity=0.211 Sum_probs=106.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI- 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~- 132 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... +...+.+|+.+|+..+++..|+.+++.+.....
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 104 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE-IYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARR 104 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSC
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccE-EEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC
Confidence 6799999999999999999999999988887776 6677654322 223467999999998888889988876521100
Q ss_pred ---hcCC------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-h
Q 017792 133 ---RSGS------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-S 182 (366)
Q Consensus 133 ---~~~~------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~ 182 (366)
.... ...+-++.+..-. ..++++ |++|+...||+++.. ++.+.+.+ +
T Consensus 105 ~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LSg--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (359)
T 2yyz_A 105 ISKDEVEKRVVEIARKLLIDNLLDRK-PTQLSG--GQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ 181 (359)
T ss_dssp SHHHHTTHHHHHHHHHTTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 0000 0011112222222 244555 888888888887654 55555444 3
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.|+|+|+++|..++ +..+||+++.|++++++..
T Consensus 182 ~~g~tvi~vTHd~~~------------------~~~~adri~vl~~G~i~~~ 215 (359)
T 2yyz_A 182 ELGITSVYVTHDQAE------------------AMTMASRIAVFNQGKLVQY 215 (359)
T ss_dssp HHCCEEEEEESCHHH------------------HHHHCSEEEEEETTEEEEE
T ss_pred hcCCEEEEEcCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 459999999997765 4456788888877765543
No 49
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.55 E-value=4.8e-15 Score=142.91 Aligned_cols=157 Identities=13% Similarity=0.209 Sum_probs=101.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL-- 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~-- 131 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... +...+.+|+.+|+..+++..|+.+++.+....
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 112 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR-IYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK 112 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--C
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCceE-EEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC
Confidence 7799999999999999999999999988887776 6677654322 22346799999998888888888876542100
Q ss_pred ---------HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 132 ---------IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 132 ---------~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
+.. -...+-++.+..-. ..++++ |++|+...||+++.. ++.+.+.+.
T Consensus 113 ~~~~~~~~~v~~-~l~~~~L~~~~~r~-~~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 188 (372)
T 1v43_A 113 FPKDEIDKRVRW-AAELLQIEELLNRY-PAQLSG--GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 188 (372)
T ss_dssp CCHHHHHHHHHH-HHHHTTCGGGTTSC-TTTCCS--SCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHHHcCChhHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 000 00111122222222 245666 899999999988764 555555443
Q ss_pred -hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 183 -LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 183 -~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.|+|+|+++|...+ +..+||+++.|+++.++..
T Consensus 189 ~~~g~tvi~vTHd~~~------------------a~~~adri~vl~~G~i~~~ 223 (372)
T 1v43_A 189 QKLKVTTIYVTHDQVE------------------AMTMGDRIAVMNRGQLLQI 223 (372)
T ss_dssp HHHTCEEEEEESCHHH------------------HHHHCSEEEEEETTEEEEE
T ss_pred HhCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 459999999997665 4456888888887765543
No 50
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.54 E-value=1.3e-15 Score=145.97 Aligned_cols=158 Identities=21% Similarity=0.246 Sum_probs=107.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... +...+.+|+.+|+..+++..|+.+++.+......
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~ 116 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD-VWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKR 116 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccE-EEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC
Confidence 7799999999999999999999999988887776 6676654322 2345679999999988888899888766432210
Q ss_pred cC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-
Q 017792 134 SG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS- 182 (366)
Q Consensus 134 ~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~- 182 (366)
.. -...+-++.+..-. ..++++ |++|+...||+++.. ++.+.+.+.
T Consensus 117 ~~~~~~~~~v~~~l~~~gL~~~~~r~-~~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 193 (355)
T 1z47_A 117 VPKDEMDARVRELLRFMRLESYANRF-PHELSG--GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD 193 (355)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCChhHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 00 00111112222212 234555 888888888887654 555555543
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.|+|+|+++|..++ +..+||+++.|+++.++..
T Consensus 194 ~~g~tvi~vTHd~~~------------------a~~~adri~vl~~G~i~~~ 227 (355)
T 1z47_A 194 EMGVTSVFVTHDQEE------------------ALEVADRVLVLHEGNVEQF 227 (355)
T ss_dssp HHTCEEEEECSCHHH------------------HHHHCSEEEEEETTEEEEE
T ss_pred hcCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 459999999997765 4556888888887765543
No 51
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.53 E-value=1.3e-15 Score=146.97 Aligned_cols=159 Identities=16% Similarity=0.199 Sum_probs=108.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... +...+.+|+++|+..+++..|+.+++.+
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 104 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ-IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAF 104 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE-EEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHH
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccE-EEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHH
Confidence 6799999999999999999999999988887776 5666543211 1234679999999988888899988776
Q ss_pred HHHHHhcCC----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRSGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~~~----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
......... ...+-++.+..-. ..++++ |++|+...||+++.. ++.+
T Consensus 105 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 181 (372)
T 1g29_1 105 PLKLRKVPRQEIDQRVREVAELLGLTELLNRK-PRELSG--GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE 181 (372)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC-GGGSCH--HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCchHhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHH
Confidence 432210000 0111112222222 245555 889999999988764 5555
Q ss_pred HHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.+.+. +.|+|+|+++|...+ +..+||+++.|+++.++..+
T Consensus 182 l~~l~~~~g~tvi~vTHd~~~------------------a~~~adri~vl~~G~i~~~g 222 (372)
T 1g29_1 182 LKKLQRQLGVTTIYVTHDQVE------------------AMTMGDRIAVMNRGVLQQVG 222 (372)
T ss_dssp HHHHHHHHTCEEEEEESCHHH------------------HHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHhcCCEEEEECCCHHH------------------HHHhCCEEEEEeCCEEEEeC
Confidence 55443 459999999997665 45578888888877665443
No 52
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.51 E-value=1.7e-15 Score=137.86 Aligned_cols=157 Identities=15% Similarity=0.184 Sum_probs=103.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHH-HhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSL-AETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~-~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+ .+.+|+.+|+..++...|+.+.+.+...
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~ 107 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK-IIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY 107 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhh
Confidence 7799999999999999999999999988877776 5666654322 223 3459999999887777788887754310
Q ss_pred HHhcCCc-e-E--EEEec---ccccC--CCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 131 LIRSGSV-D-V--VVVDS---VAALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 131 ~~~~~~~-~-l--vviDs---l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
....... . . -+++. +.... +...+++ |++|+...||+++.. +..+...+
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSg--Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~ 185 (240)
T 1ji0_A 108 NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSG--GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI 185 (240)
T ss_dssp TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCH--HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 0000000 0 0 00111 11111 1234444 888888888887653 55555555
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
++.|+|||+++|..+. +..+||+++.|.++.++
T Consensus 186 ~~~g~tvi~vtHd~~~------------------~~~~~d~v~~l~~G~i~ 218 (240)
T 1ji0_A 186 NQEGTTILLVEQNALG------------------ALKVAHYGYVLETGQIV 218 (240)
T ss_dssp HHTTCCEEEEESCHHH------------------HHHHCSEEEEEETTEEE
T ss_pred HHCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEE
Confidence 5579999999997654 55678999998876543
No 53
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.51 E-value=1.7e-14 Score=132.03 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=99.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHH--HhhcCCeEEEEeCCCCCC--H-HH-HhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAE--AQRQGGYCVFIDAEHALD--P-SL-AETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~--~~~~gg~vl~id~e~~~~--~-~~-~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++. +.+..|. +++++..... . .+ ...+++.+|+..++...++.+++.+.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~-I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 104 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGE-ILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLA 104 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEE-EEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceE-EEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHH
Confidence 779999999999999999999999987 5566675 6666654322 2 22 33488999998887778888877653
Q ss_pred HHHHhcC--C-------c----eEEEEe-cccccCCCCc-cCCccchhhHHHHHHHHHHH--------------------
Q 017792 129 DTLIRSG--S-------V----DVVVVD-SVAALVPKGE-LDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 129 ~~~~~~~--~-------~----~lvviD-sl~~l~~~~~-l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
....... . . ..+-++ .+..-. ... +++ |++|+...||+++..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~LSg--GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~ 181 (250)
T 2d2e_A 105 LQAKLGREVGVAEFWTKVKKALELLDWDESYLSRY-LNEGFSG--GEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKV 181 (250)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSB-TTCC------HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHH
T ss_pred HHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-cccCCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHH
Confidence 3211100 0 0 000011 111111 123 555 899999999988764
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeee-ceEEEEEEEecee
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFY-ASVRLNIKRIGLV 232 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~-ad~~i~l~~~~~~ 232 (366)
+.++...+++.|+|||+++|..+. +..+ ||+++.|+++.++
T Consensus 182 l~~~l~~l~~~g~tvi~vtHd~~~------------------~~~~~~d~v~~l~~G~i~ 223 (250)
T 2d2e_A 182 VARGVNAMRGPNFGALVITHYQRI------------------LNYIQPDKVHVMMDGRVV 223 (250)
T ss_dssp HHHHHHHHCSTTCEEEEECSSSGG------------------GGTSCCSEEEEEETTEEE
T ss_pred HHHHHHHHHhcCCEEEEEecCHHH------------------HHHhcCCEEEEEECCEEE
Confidence 566666665569999999997654 4445 5888888766543
No 54
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.51 E-value=6.4e-15 Score=134.07 Aligned_cols=151 Identities=12% Similarity=0.121 Sum_probs=101.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVD---- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~---- 129 (366)
+++ ++++|+||||||||||++.+++...+..|. +++++..... ..+.+.+|+.+|+..++...++.+.+.+..
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 99 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGE-VRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE 99 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC
Confidence 678 999999999999999999999988877776 5666643321 223457999999988777778887765421
Q ss_pred ---------HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 130 ---------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 130 ---------~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
.++.... ++...... ...+++ |++|+...||+++.. +..+...
T Consensus 100 ~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--GqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 171 (240)
T 2onk_A 100 RVERDRRVREMAEKLG-----IAHLLDRK-PARLSG--GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRF 171 (240)
T ss_dssp HHHHHHHHHHHHHTTT-----CTTTTTCC-GGGSCH--HHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcC-----CHHHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1111111 11111111 234444 888888888877654 5555555
Q ss_pred hh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 181 LS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 181 l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+. +.|+|||+++|..+. +..+||+++.|+++.++.
T Consensus 172 l~~~~g~tvi~vtHd~~~------------------~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 172 VQREFDVPILHVTHDLIE------------------AAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHTCCEEEEESCHHH------------------HHHHCSEEEEEETTEEEE
T ss_pred HHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 54 359999999997654 556789999998765443
No 55
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.51 E-value=3.9e-15 Score=142.75 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=105.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC------CHHHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------DPSLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~------~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++...+..|. +++++.... .+...+.+|+.+|+..+++..|+.+++.+.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~ 106 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE-LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP 106 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEE-EEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGG
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHH
Confidence 7799999999999999999999999988877776 566654321 123456799999998888888888887542
Q ss_pred HHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
....... -...+-++.+..-. ..++++ |++|+...||+++.. ++.+.
T Consensus 107 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~-~~~LSG--Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 183 (353)
T 1oxx_K 107 LTNMKMSKEEIRKRVEEVAKILDIHHVLNHF-PRELSG--AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183 (353)
T ss_dssp GTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchHhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 1100000 00011112222212 244555 888888888887654 55555
Q ss_pred HHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 179 HSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 179 ~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.+ ++.|+|+|+++|..++ +..+||+++.|+++.++..
T Consensus 184 ~~l~~~~g~tvi~vTHd~~~------------------~~~~adri~vl~~G~i~~~ 222 (353)
T 1oxx_K 184 KEVQSRLGVTLLVVSHDPAD------------------IFAIADRVGVLVKGKLVQV 222 (353)
T ss_dssp HHHHHHHCCEEEEEESCHHH------------------HHHHCSEEEEEETTEEEEE
T ss_pred HHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 554 3469999999997765 4556788888877665443
No 56
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.51 E-value=2.3e-14 Score=131.10 Aligned_cols=151 Identities=16% Similarity=0.152 Sum_probs=101.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|++++|+||||||||||++.+++.+.+. |. +++++.... . ..+.+.++|.+|+..++...++.+.+.+.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 100 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GS-IQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD 100 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EE-EEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eE-EEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc
Confidence 7799999999999999999999999998888 76 566654321 2 34567799999998777767887776532
Q ss_pred -------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH---------------------------H
Q 017792 129 -------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------------------L 174 (366)
Q Consensus 129 -------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------------------L 174 (366)
..++.... ++....-. ...+++ |++|+...||+++.. +
T Consensus 101 ~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--Gq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l 172 (249)
T 2qi9_C 101 KTRTELLNDVAGALA-----LDDKLGRS-TNQLSG--GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL 172 (249)
T ss_dssp TTCHHHHHHHHHHTT-----CGGGTTSB-GGGCCH--HHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHH
T ss_pred CCcHHHHHHHHHHcC-----ChhHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHH
Confidence 11111111 11111111 233444 788888888877643 5
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
..+...+.+.|.|||+++|..+. +..+||+++.|+++.++.
T Consensus 173 ~~~l~~l~~~g~tviivtHd~~~------------------~~~~~d~v~~l~~G~i~~ 213 (249)
T 2qi9_C 173 DKILSALSQQGLAIVMSSHDLNH------------------TLRHAHRAWLLKGGKMLA 213 (249)
T ss_dssp HHHHHHHHHTTCEEEEECSCHHH------------------HHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHhCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 55555554459999999997654 456788888888765443
No 57
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.50 E-value=1.2e-14 Score=135.18 Aligned_cols=152 Identities=22% Similarity=0.209 Sum_probs=100.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC----C-HHHHhhcccccCcceec--CCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLA--QPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~--~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.... . ..+.+.+++.+|+..+. ...++.+.+.+
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~-I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~ 122 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT-VNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVIS 122 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeE-EEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHh
Confidence 7799999999999999999999999988887776 566665432 1 34567799999986532 23477776643
Q ss_pred HH-------------------HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH---------------
Q 017792 128 VD-------------------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------- 173 (366)
Q Consensus 128 ~~-------------------~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------- 173 (366)
.. .++.... ++...... ...+++ |++|+...||+++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----l~~~~~~~-~~~LSg--GqkqRv~lAraL~~~p~lLlLDEPts~LD~ 194 (279)
T 2ihy_A 123 GAFKSIGVYQDIDDEIRNEAHQLLKLVG-----MSAKAQQY-IGYLST--GEKQRVMIARALMGQPQVLILDEPAAGLDF 194 (279)
T ss_dssp TC---------CCHHHHHHHHHHHHHTT-----CGGGTTSB-GGGSCH--HHHHHHHHHHHHHTCCSEEEEESTTTTCCH
T ss_pred hhhhccccccCCcHHHHHHHHHHHHHcC-----ChhHhcCC-hhhCCH--HHHHHHHHHHHHhCCCCEEEEeCCccccCH
Confidence 11 0111000 11111111 234444 888888888887654
Q ss_pred -----HHHHHHHhhhcCcEE--EEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 -----LRKLSHSLSLSQTIL--IFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 -----L~~L~~~l~~~~~tV--I~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+..+...+++.|+|| |+++|..+. +..+||+++.|.++.++.
T Consensus 195 ~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~------------------~~~~~d~v~~l~~G~i~~ 243 (279)
T 2ihy_A 195 IARESLLSILDSLSDSYPTLAMIYVTHFIEE------------------ITANFSKILLLKDGQSIQ 243 (279)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEESCGGG------------------CCTTCCEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEecCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 555555555458999 999997764 455788888888765443
No 58
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.49 E-value=5.5e-14 Score=129.89 Aligned_cols=158 Identities=17% Similarity=0.190 Sum_probs=101.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEeCCCCC--C-HHH-HhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHAL--D-PSL-AETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~--~~~gg~vl~id~e~~~--~-~~~-~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++.. .+..|. +++++.... . ..+ ...+++.+|+..++...++.+++...
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~-I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~ 121 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGT-VEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA 121 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEE-EEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeE-EEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHH
Confidence 7899999999999999999999999874 345665 667665432 2 222 33489999998887777887776543
Q ss_pred HH-HH--hcC---Cc-----eE-EEEec--cc-ccCCC--C-ccCCccchhhHHHHHHHHHHH-----------------
Q 017792 129 DT-LI--RSG---SV-----DV-VVVDS--VA-ALVPK--G-ELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 129 ~~-~~--~~~---~~-----~l-vviDs--l~-~l~~~--~-~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
.. .. ... .. .+ -+++. +. .+..+ . .+++ |++|+...||+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg--Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~ 199 (267)
T 2zu0_C 122 LNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG--GEKKRNDILQMAVLEPELCILDESDSGLDIDA 199 (267)
T ss_dssp HHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCH--HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHH
T ss_pred HHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH--HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 21 10 000 00 00 00111 11 11111 1 3555 899999999988764
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeee-ceEEEEEEEeceee
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFY-ASVRLNIKRIGLVK 233 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~-ad~~i~l~~~~~~~ 233 (366)
+..+...+++.|+|||+++|..+. +..+ ||+++.|.+++++.
T Consensus 200 ~~~l~~~l~~l~~~g~tviivtHd~~~------------------~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 200 LKVVADGVNSLRDGKRSFIIVTHYQRI------------------LDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp HHHHHHHHHTTCCSSCEEEEECSSGGG------------------GGTSCCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhcCCEEEEEeeCHHH------------------HHhhcCCEEEEEECCEEEE
Confidence 556665555568999999997654 3444 78888888765443
No 59
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.49 E-value=4e-15 Score=136.04 Aligned_cols=150 Identities=21% Similarity=0.270 Sum_probs=99.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++. .|+.+.+.+..
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~ 109 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ-VLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPG 109 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCCC
Confidence 7799999999999999999999999988887776 5666654322 345678999999887664 47777664311
Q ss_pred -------HHHhcCCceEEEEecccc--------cC--CCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 130 -------TLIRSGSVDVVVVDSVAA--------LV--PKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 130 -------~~~~~~~~~lvviDsl~~--------l~--~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
..+.... ++.+.. .. +...+++ |++|+...||+++..
T Consensus 110 ~~~~~~~~~l~~~~-----l~~~~~~~~~gl~~~~~~~~~~LSg--Gq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~ 182 (247)
T 2ff7_A 110 MSVEKVIYAAKLAG-----AHDFISELREGYNTIVGEQGAGLSG--GQRQRIAIARALVNNPKILIFDEATSALDYESEH 182 (247)
T ss_dssp CCHHHHHHHHHHHT-----CHHHHHTSTTGGGCBCSTTTTCCCH--HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHH
T ss_pred CCHHHHHHHHHHhC-----hHHHHHhCcchhhhhhhCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 0000000 111111 11 0134554 888888888887654
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+..+...++ .++|||+++|..+. +.. ||+++.|.++.++.
T Consensus 183 ~i~~~l~~~~-~g~tviivtH~~~~------------------~~~-~d~v~~l~~G~i~~ 223 (247)
T 2ff7_A 183 VIMRNMHKIC-KGRTVIIIAHRLST------------------VKN-ADRIIVMEKGKIVE 223 (247)
T ss_dssp HHHHHHHHHH-TTSEEEEECSSGGG------------------GTT-SSEEEEEETTEEEE
T ss_pred HHHHHHHHHc-CCCEEEEEeCCHHH------------------HHh-CCEEEEEECCEEEE
Confidence 555555554 49999999997653 333 88998888765443
No 60
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.47 E-value=1.3e-14 Score=134.39 Aligned_cols=155 Identities=21% Similarity=0.253 Sum_probs=100.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVDT- 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~- 130 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.... . ..+.+.++|.+|+..++. .|+.+.+.+...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~ 119 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK-VLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTR 119 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCE-EEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhccc
Confidence 7899999999999999999999999988877776 566664332 1 345677999999987765 488777654210
Q ss_pred ---------HHhcCCceEEEEe----cccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 131 ---------LIRSGSVDVVVVD----SVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 131 ---------~~~~~~~~lvviD----sl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
........- +++ .+..... ...+++ |++|+...||+++.. +.
T Consensus 120 ~~~~~~~~~~~~~~~~~~-~l~~l~~gl~~~~~~~~~~LSg--Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~ 196 (271)
T 2ixe_A 120 TPTMEEITAVAMESGAHD-FISGFPQGYDTEVGETGNQLSG--GQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQ 196 (271)
T ss_dssp CCCHHHHHHHHHHHTCHH-HHHHSTTGGGSBCCGGGTTSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred CChHHHHHHHHHHHhHHH-HHHhhhcchhhhhcCCcCCCCH--HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHH
Confidence 000000000 001 1111111 134444 888888888887654 55
Q ss_pred HHHHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 176 KLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 176 ~L~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
.+...+. +.++|||+++|..+. +.. ||+++.|.++.++.
T Consensus 197 ~~l~~~~~~~g~tviivtHd~~~------------------~~~-~d~v~~l~~G~i~~ 236 (271)
T 2ixe_A 197 RLLYESPEWASRTVLLITQQLSL------------------AER-AHHILFLKEGSVCE 236 (271)
T ss_dssp HHHHHCTTTTTSEEEEECSCHHH------------------HTT-CSEEEEEETTEEEE
T ss_pred HHHHHHHhhcCCEEEEEeCCHHH------------------HHh-CCEEEEEECCEEEE
Confidence 5555554 358999999997653 343 88888888665443
No 61
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.47 E-value=1.2e-14 Score=136.66 Aligned_cols=156 Identities=19% Similarity=0.261 Sum_probs=102.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+++.+++++|+..++. .|+.+++.+.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~-I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~ 154 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC-IRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT 154 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEE-EEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcE-EEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc
Confidence 7899999999999999999999999998887776 6777765433 356788999999987764 4666654321
Q ss_pred ------HHHHhcCCceEEEEe----cccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 129 ------DTLIRSGSVDVVVVD----SVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 129 ------~~~~~~~~~~lvviD----sl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
..........- .++ .+..... ...+++ |++|+...||++... +..
T Consensus 155 ~~~~~~~~~~~~~~l~~-~i~~lp~gl~t~~~~~g~~LSG--GqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~ 231 (306)
T 3nh6_A 155 AGNDEVEAAAQAAGIHD-AIMAFPEGYRTQVGERGLKLSG--GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA 231 (306)
T ss_dssp CCHHHHHHHHHHHTCHH-HHHHSTTGGGCEESTTSBCCCH--HHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcHH-HHHhccchhhhHhcCCcCCCCH--HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 11110000000 001 1111111 134554 899999999988764 444
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+...+. .++|+|+++|..+. +.. ||+++.|.++.++..|
T Consensus 232 ~l~~l~-~~~Tvi~itH~l~~------------------~~~-aD~i~vl~~G~iv~~G 270 (306)
T 3nh6_A 232 SLAKVC-ANRTTIVVAHRLST------------------VVN-ADQILVIKDGCIVERG 270 (306)
T ss_dssp HHHHHH-TTSEEEEECCSHHH------------------HHT-CSEEEEEETTEEEEEE
T ss_pred HHHHHc-CCCEEEEEEcChHH------------------HHc-CCEEEEEECCEEEEEC
Confidence 444443 37899999997653 444 8999999877654443
No 62
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.46 E-value=4.5e-14 Score=129.49 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=94.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+++|++++|+||||||||||++.+++.+.+..|.+. +.+.+++.+|+..++...++.+.+.+.......
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-----------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~ 96 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-----------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHIN 96 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-----------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-----------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcc
Confidence 779999999999999999999999999888777754 234688888887766666777766542110000
Q ss_pred ----CC-c---------eEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 135 ----GS-V---------DVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 135 ----~~-~---------~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
.. . ..+-++....-. ...+++ |++|+...||+++.. +..+...
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 173 (253)
T 2nq2_C 97 TFAKPKSHDYQVAMQALDYLNLTHLAKRE-FTSLSG--GQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLID 173 (253)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCGGGTTSB-GGGSCH--HHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHcCChHHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 00 0 000011111111 233444 888888888887664 5555555
Q ss_pred hhhc-CcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEec
Q 017792 181 LSLS-QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 230 (366)
Q Consensus 181 l~~~-~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~ 230 (366)
+++. |+|||+++|..+. +..+||+++.|.++.
T Consensus 174 l~~~~g~tvi~vtHd~~~------------------~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 174 LAQSQNMTVVFTTHQPNQ------------------VVAIANKTLLLNKQN 206 (253)
T ss_dssp HHHTSCCEEEEEESCHHH------------------HHHHCSEEEEEETTE
T ss_pred HHHhcCCEEEEEecCHHH------------------HHHhCCEEEEEeCCe
Confidence 5444 9999999997654 455788888887665
No 63
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.44 E-value=1.3e-14 Score=132.28 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=99.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++. .|+.+.+.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~ 102 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE-ITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEG 102 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSC-EEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhccC
Confidence 7799999999999999999999999998888787 5666543221 234567999999876654 3666554321
Q ss_pred -------HHHHhcCCceEEEEec----ccccC--CCCccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 129 -------DTLIRSGSVDVVVVDS----VAALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 129 -------~~~~~~~~~~lvviDs----l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
...+......- .++. +.... +...+++ |++|+...||+++.. +.
T Consensus 103 ~~~~~~~~~~l~~~~l~~-~~~~~~~gl~~~~~~~~~~LSg--Gq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~ 179 (243)
T 1mv5_A 103 DYTDEDLWQVLDLAFARS-FVENMPDQLNTEVGERGVKISG--GQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179 (243)
T ss_dssp CSCHHHHHHHHHHHTCTT-TTTSSTTGGGCEESTTSBCCCH--HHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHH
T ss_pred CCCHHHHHHHHHHhChHH-HHHhCccchhchhccCcCcCCH--HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 00000000000 0000 00000 0134554 899999999988765 56
Q ss_pred HHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 176 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
.+...+. .++|||+++|..+. +. .||+++.|.++.++..
T Consensus 180 ~~l~~~~-~~~tvi~vtH~~~~------------------~~-~~d~v~~l~~G~i~~~ 218 (243)
T 1mv5_A 180 KALDSLM-KGRTTLVIAHRLST------------------IV-DADKIYFIEKGQITGS 218 (243)
T ss_dssp HHHHHHH-TTSEEEEECCSHHH------------------HH-HCSEEEEEETTEECCC
T ss_pred HHHHHhc-CCCEEEEEeCChHH------------------HH-hCCEEEEEECCEEEEe
Confidence 6665555 49999999997543 43 4899999987654433
No 64
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.43 E-value=1.8e-14 Score=128.81 Aligned_cols=137 Identities=20% Similarity=0.203 Sum_probs=90.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.... .+.+.+++.+|+..++...++.+.+.+.......
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~-I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~ 108 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE-IIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV 108 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC
Confidence 7799999999999999999999999988877776 566654332 3567799999998887777998887664322110
Q ss_pred CCceEEEEecccccC-----C--CCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcCcE
Q 017792 135 GSVDVVVVDSVAALV-----P--KGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQTI 187 (366)
Q Consensus 135 ~~~~lvviDsl~~l~-----~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~~t 187 (366)
....-.++.+...+ . ...+++ |++|+...||+++.. +..+...+++.|.|
T Consensus 109 -~~~~~~~~~~l~~~gl~~~~~~~~~LSg--Gqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~t 185 (214)
T 1sgw_A 109 -KVNKNEIMDALESVEVLDLKKKLGELSQ--GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185 (214)
T ss_dssp -CCCHHHHHHHHHHTTCCCTTSBGGGSCH--HHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSE
T ss_pred -chHHHHHHHHHHHcCCCcCCCChhhCCH--HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence 00000011111111 0 123333 777777777766543 55555555556899
Q ss_pred EEEEecCCcc
Q 017792 188 LIFINQVRAK 197 (366)
Q Consensus 188 VI~i~h~~~~ 197 (366)
||+++|....
T Consensus 186 iiivtHd~~~ 195 (214)
T 1sgw_A 186 VIISSREELS 195 (214)
T ss_dssp EEEEESSCCT
T ss_pred EEEEeCCHHH
Confidence 9999998765
No 65
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.42 E-value=7.8e-14 Score=128.38 Aligned_cols=152 Identities=18% Similarity=0.270 Sum_probs=97.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+||||||||||++.+++.+.+ .|. +++++.... . ..+.+.+++.+|+..++. .|+.+.+.+..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~-I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~ 119 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGD-IKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKLD 119 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEE-EEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeE-EEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCCC
Confidence 779999999999999999999999998764 555 667765432 1 345677999999887764 47777664310
Q ss_pred -------HHHhcCCceEEEEecccc----cC--CCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 130 -------TLIRSGSVDVVVVDSVAA----LV--PKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 130 -------~~~~~~~~~lvviDsl~~----l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
..+......- .++.+.. .. ....+++ |++|+...||+++.. +..
T Consensus 120 ~~~~~~~~~l~~~~l~~-~~~~l~~~~~~~~~~~~~~LSg--GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~ 196 (260)
T 2ghi_A 120 ATDEEVIKATKSAQLYD-FIEALPKKWDTIVGNKGMKLSG--GERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196 (260)
T ss_dssp CCHHHHHHHHHHTTCHH-HHHTSTTGGGCEESSSSBCCCH--HHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCHH-HHHhccccccccccCCcCcCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 0110000000 0000100 00 1134554 899999999988764 555
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+...+++ +.|||+++|.... +. .||+++.|.++.++
T Consensus 197 ~l~~l~~-~~tviivtH~~~~------------------~~-~~d~i~~l~~G~i~ 232 (260)
T 2ghi_A 197 AVEDLRK-NRTLIIIAHRLST------------------IS-SAESIILLNKGKIV 232 (260)
T ss_dssp HHHHHTT-TSEEEEECSSGGG------------------ST-TCSEEEEEETTEEE
T ss_pred HHHHhcC-CCEEEEEcCCHHH------------------HH-hCCEEEEEECCEEE
Confidence 5555544 8999999997643 33 38888888766543
No 66
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.41 E-value=3.1e-13 Score=131.06 Aligned_cols=151 Identities=17% Similarity=0.169 Sum_probs=100.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
+++|++++|+||||||||||++.+++... ..|. +++++..... ..+.+.+|+.+|+..+++ .++.+++..
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~-I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~~ 120 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGE-IQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNAAH 120 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEE-EEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTCCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeE-EEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcccc
Confidence 78999999999999999999999998876 6665 7788765432 345678999999987764 466665531
Q ss_pred ----HHHHHhcCCceEEEEecccccCCC----------CccCCccchhhHHHHHHHHHHH--------------------
Q 017792 128 ----VDTLIRSGSVDVVVVDSVAALVPK----------GELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 128 ----~~~~~~~~~~~lvviDsl~~l~~~----------~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+...+.... ++.+..-.|. ..+++ |++|+...||+++..
T Consensus 121 ~~~~v~~~l~~~~-----L~~~~~~~p~~l~~~i~~~g~~LSG--GqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~ 193 (390)
T 3gd7_A 121 SDQEIWKVADEVG-----LRSVIEQFPGKLDFVLVDGGCVLSH--GHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193 (390)
T ss_dssp CHHHHHHHHHHTT-----CHHHHTTSTTGGGCEECTTTTTSCH--HHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHhC-----CHHHHhhcccccccccccccccCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 111111111 1122222211 12555 899999999988764
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
++.+.+.+. .++|+|+++|..+. +. .||+++.|++++++..+
T Consensus 194 l~~~l~~~~-~~~tvi~vtHd~e~------------------~~-~aDri~vl~~G~i~~~g 235 (390)
T 3gd7_A 194 IRRTLKQAF-ADCTVILCEARIEA------------------ML-ECDQFLVIEENKVRQYD 235 (390)
T ss_dssp HHHHHHTTT-TTSCEEEECSSSGG------------------GT-TCSEEEEEETTEEEEES
T ss_pred HHHHHHHHh-CCCEEEEEEcCHHH------------------HH-hCCEEEEEECCEEEEEC
Confidence 444444332 48999999997543 32 37888888887766544
No 67
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.37 E-value=3.7e-13 Score=137.57 Aligned_cols=156 Identities=17% Similarity=0.297 Sum_probs=102.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+++++++.+|++.++. .|+.+++....
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~-i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~ 443 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS-ICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAEG 443 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCE-EEECCEEhhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCCC
Confidence 7899999999999999999999999999888886 6677654322 356678999999987765 36766654321
Q ss_pred --------HHHhcCCceEEEEe----cccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 130 --------TLIRSGSVDVVVVD----SVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 130 --------~~~~~~~~~lvviD----sl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
..++.....- .++ .+..... ...+++ |++|+...||++... +.
T Consensus 444 ~~~~~~~~~~~~~~~l~~-~~~~~p~g~~t~~~~~~~~LSg--Gq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~ 520 (582)
T 3b5x_A 444 EYTREQIEQAARQAHAME-FIENMPQGLDTVIGENGTSLSG--GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQ 520 (582)
T ss_pred CCCHHHHHHHHHHCCCHH-HHHhCcccccchhcCCCCcCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH
Confidence 0111000000 000 1111111 134554 899999999988764 44
Q ss_pred HHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 176 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
++...+.+ |+|+|+++|..+. +. .||+++.|++++++..|
T Consensus 521 ~~l~~~~~-~~tvi~itH~~~~------------------~~-~~d~i~~l~~G~i~~~g 560 (582)
T 3b5x_A 521 AALDELQK-NKTVLVIAHRLST------------------IE-QADEILVVDEGEIIERG 560 (582)
T ss_pred HHHHHHcC-CCEEEEEecCHHH------------------HH-hCCEEEEEECCEEEEEC
Confidence 44444443 8999999996543 33 48999999887655443
No 68
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.35 E-value=5.6e-13 Score=122.78 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=96.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcc-cccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIG-VKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig-~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
++ |++++|+||||||||||++.+++.. +..|. +++++..... .. .+.++ +.+|+..+ ..++.+.+.+...+.
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~-I~~~g~~~~~~~~-~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~ 101 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN-IFINGMEVRKIRN-YIRYSTNLPEAYEI--GVTVNDIVYLYEELK 101 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEE-EEETTEEGGGCSC-CTTEEECCGGGSCT--TSBHHHHHHHHHHHT
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcE-EEECCEECcchHH-hhheEEEeCCCCcc--CCcHHHHHHHhhhhc
Confidence 78 9999999999999999999999998 77776 5666532211 11 45789 99998876 678888776543211
Q ss_pred hcCCc-------eEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHhhhcCcE
Q 017792 133 RSGSV-------DVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSLSLSQTI 187 (366)
Q Consensus 133 ~~~~~-------~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l~~~~~t 187 (366)
.... ..+-++ ...... ...+++ |++|+...||+++.. -..+...+++...|
T Consensus 102 -~~~~~~~~~~l~~~gl~~~~~~~~-~~~LSg--GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~t 177 (263)
T 2pjz_A 102 -GLDRDLFLEMLKALKLGEEILRRK-LYKLSA--GQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKE 177 (263)
T ss_dssp -CCCHHHHHHHHHHTTCCGGGGGSB-GGGSCH--HHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSE
T ss_pred -chHHHHHHHHHHHcCCChhHhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCc
Confidence 0000 000011 111111 234444 888888888887764 22333333332229
Q ss_pred EEEEecCCcccccccCCCCeeeccCCceeeeece-EEEEEEEeceeecC
Q 017792 188 LIFINQVRAKLSTFGFGGPTEVTCGGNALKFYAS-VRLNIKRIGLVKKG 235 (366)
Q Consensus 188 VI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad-~~i~l~~~~~~~~~ 235 (366)
||+++|..+. +..+|| +++.|+++.++..+
T Consensus 178 viivtHd~~~------------------~~~~~d~~i~~l~~G~i~~~g 208 (263)
T 2pjz_A 178 GILVTHELDM------------------LNLYKEYKAYFLVGNRLQGPI 208 (263)
T ss_dssp EEEEESCGGG------------------GGGCTTSEEEEEETTEEEEEE
T ss_pred EEEEEcCHHH------------------HHHhcCceEEEEECCEEEEec
Confidence 9999997654 455788 88888877665544
No 69
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.33 E-value=4.4e-13 Score=121.04 Aligned_cols=146 Identities=15% Similarity=0.197 Sum_probs=92.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV------ 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~------ 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++ +++|.+|+..++.. ++.+++.+.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g----------~i~~v~q~~~~~~~-tv~enl~~~~~~~~~ 98 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSG----------RISFCSQFSWIMPG-TIKENIIFGVSYDEY 98 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEECS----------CEEEECSSCCCCSB-CHHHHHHTTSCCCHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccE-EEECC----------EEEEEecCCcccCC-CHHHHhhccCCcChH
Confidence 7799999999999999999999999998887776 55554 48899988776654 777776531
Q ss_pred --HHHHhcCCceEEEEeccccc----C--CCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHh-h
Q 017792 129 --DTLIRSGSVDVVVVDSVAAL----V--PKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSL-S 182 (366)
Q Consensus 129 --~~~~~~~~~~lvviDsl~~l----~--~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l-~ 182 (366)
..........- .++.+... . +...+++ |++|+...||+++.. -..+...+ .
T Consensus 99 ~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~LSg--Gqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 175 (229)
T 2pze_A 99 RYRSVIKACQLEE-DISKFAEKDNIVLGEGGITLSG--GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC 175 (229)
T ss_dssp HHHHHHHHTTCHH-HHTTSTTGGGSCBCTTCTTSCH--HHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCC
T ss_pred HHHHHHHHhCcHH-HHHhCcccccccccCCCCcCCH--HHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHH
Confidence 11111111000 01111000 0 0134544 888888888887754 23333321 2
Q ss_pred --hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 183 --LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 183 --~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
..+.|||+++|..+. +. .||+++.|+++.++..
T Consensus 176 ~~~~~~tvi~vtH~~~~------------------~~-~~d~v~~l~~G~i~~~ 210 (229)
T 2pze_A 176 KLMANKTRILVTSKMEH------------------LK-KADKILILHEGSSYFY 210 (229)
T ss_dssp CCTTTSEEEEECCCHHH------------------HH-HCSEEEEEETTEEEEE
T ss_pred HhhCCCEEEEEcCChHH------------------HH-hCCEEEEEECCEEEEE
Confidence 238999999997543 33 3899998887655443
No 70
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.33 E-value=1.3e-12 Score=133.52 Aligned_cols=155 Identities=17% Similarity=0.253 Sum_probs=103.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+++++++.+|++.+++ .|+.+++....
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~-i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~ 443 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH-ILMDGHDLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYARTE 443 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEE-EEETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCe-EEECCEEccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCCC
Confidence 7899999999999999999999999998887776 6777754432 356778999999987765 47777665421
Q ss_pred --------HHHhcCCceEEEEe----cccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 130 --------TLIRSGSVDVVVVD----SVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 130 --------~~~~~~~~~lvviD----sl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
..++.....- .++ .+..... ...+++ |++|+...||++... +.
T Consensus 444 ~~~~~~~~~~l~~~~l~~-~~~~~p~g~~~~~~~~~~~LSg--Gq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~ 520 (582)
T 3b60_A 444 EYSREQIEEAARMAYAMD-FINKMDNGLDTIIGENGVLLSG--GQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520 (582)
T ss_dssp CCCHHHHHHHHHTTTCHH-HHHHSTTGGGSBCCTTSCSSCH--HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCHH-HHHhccccccccccCCCCCCCH--HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHH
Confidence 1111111100 001 1111111 134444 899999999998764 44
Q ss_pred HHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 176 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
++...+.+ |+|+|+++|..+. +. .||+++.|++++++..
T Consensus 521 ~~l~~~~~-~~tvi~itH~~~~------------------~~-~~d~i~~l~~G~i~~~ 559 (582)
T 3b60_A 521 AALDELQK-NRTSLVIAHRLST------------------IE-QADEIVVVEDGIIVER 559 (582)
T ss_dssp HHHHHHHT-TSEEEEECSCGGG------------------TT-TCSEEEEEETTEEEEE
T ss_pred HHHHHHhC-CCEEEEEeccHHH------------------HH-hCCEEEEEECCEEEEe
Confidence 55544444 8999999997643 33 4899999987765443
No 71
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.31 E-value=2.5e-12 Score=116.67 Aligned_cols=141 Identities=17% Similarity=0.266 Sum_probs=90.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHH-----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD----- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~----- 129 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++ .+++.+|+..+ ...|+.+.+.+..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g----------~i~~v~Q~~~~-~~~tv~enl~~~~~~~~~ 95 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH-VAIKG----------SVAYVPQQAWI-QNDSLRENILFGCQLEEP 95 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEE-EEECS----------CEEEECSSCCC-CSEEHHHHHHTTSCCCTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECC----------EEEEEcCCCcC-CCcCHHHHhhCccccCHH
Confidence 7899999999999999999999999998887776 55554 37888887654 3556666654311
Q ss_pred ---HHHhcCCceEEEEecccc--------c-CCCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHH
Q 017792 130 ---TLIRSGSVDVVVVDSVAA--------L-VPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHS 180 (366)
Q Consensus 130 ---~~~~~~~~~lvviDsl~~--------l-~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~ 180 (366)
....... + .+.+.. + .+...+++ |++|+...||+++.. -..+...
T Consensus 96 ~~~~~~~~~~--l--~~~~~~~~~~~~~~~~~~~~~LSg--GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ 169 (237)
T 2cbz_A 96 YYRSVIQACA--L--LPDLEILPSGDRTEIGEKGVNLSG--GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEN 169 (237)
T ss_dssp HHHHHHHHTT--C--HHHHTTSTTGGGSEESTTSBCCCH--HHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHh--h--HHHHHhccccccccccCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 0000000 0 000000 0 11234544 888988888888764 2333333
Q ss_pred hh-----hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 181 LS-----LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 181 l~-----~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+. ..++|||+++|..+. +. .||+++.|.++.++
T Consensus 170 l~~~~~~~~~~tviivtH~~~~------------------~~-~~d~v~~l~~G~i~ 207 (237)
T 2cbz_A 170 VIGPKGMLKNKTRILVTHSMSY------------------LP-QVDVIIVMSGGKIS 207 (237)
T ss_dssp TTSTTSTTTTSEEEEECSCSTT------------------GG-GSSEEEEEETTEEE
T ss_pred HHHHHhhcCCCEEEEEecChHH------------------HH-hCCEEEEEeCCEEE
Confidence 31 248999999997643 33 48888888766543
No 72
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.31 E-value=1.4e-12 Score=133.80 Aligned_cols=157 Identities=18% Similarity=0.270 Sum_probs=103.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+++++++.+|++.++. .|+.+++...
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~-i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~~ 455 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ-ILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNPG 455 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEE-EEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSSTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeE-EEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCCC
Confidence 7899999999999999999999999998887776 6777654322 456788999999988774 4777766431
Q ss_pred ------HHHHhcCCceEEEEecc----cccCC--CCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 129 ------DTLIRSGSVDVVVVDSV----AALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 129 ------~~~~~~~~~~lvviDsl----~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
..........- .++.+ ..... ...+++ |++|+...||++... +.+
T Consensus 456 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~~~g~~LSg--Gq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~ 532 (598)
T 3qf4_B 456 ATDEEIKEAAKLTHSDH-FIKHLPEGYETVLTDNGEDLSQ--GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQA 532 (598)
T ss_dssp CCTTHHHHHTTTTTCHH-HHHTSTTGGGCBCHHHHTTSCH--HHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCHH-HHHhccccccchhcCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence 11111100000 00111 00000 023444 889999999987653 444
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
....+. .|+|+|+++|..+. +.+ ||+++.|++++++..|+
T Consensus 533 ~l~~~~-~~~t~i~itH~l~~------------------~~~-~d~i~~l~~G~i~~~g~ 572 (598)
T 3qf4_B 533 AMWKLM-EGKTSIIIAHRLNT------------------IKN-ADLIIVLRDGEIVEMGK 572 (598)
T ss_dssp HHHHHH-TTSEEEEESCCTTH------------------HHH-CSEEEEECSSSEEECSC
T ss_pred HHHHHc-CCCEEEEEecCHHH------------------HHc-CCEEEEEECCEEEEECC
Confidence 444443 48999999997653 433 89999998877655543
No 73
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.29 E-value=8.8e-13 Score=134.68 Aligned_cols=156 Identities=20% Similarity=0.251 Sum_probs=102.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+++++++.+|++.++.. |+.+++..
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~-i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~ 441 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ-ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPT 441 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE-EEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE-EEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCCC
Confidence 7899999999999999999999999998888776 6777654322 4567789999999877654 66665532
Q ss_pred -----HHHHHhcCCceEEEEe----cccccCCC--CccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 128 -----VDTLIRSGSVDVVVVD----SVAALVPK--GELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 128 -----~~~~~~~~~~~lvviD----sl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
+.+........- .++ .+...... ..+++ |++|+...||++... +.+
T Consensus 442 ~~~~~~~~~~~~~~~~~-~~~~lp~g~~t~~~~~g~~LSg--Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~ 518 (578)
T 4a82_A 442 ATDEEVVEAAKMANAHD-FIMNLPQGYDTEVGERGVKLSG--GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 518 (578)
T ss_dssp CCHHHHHHHHHHTTCHH-HHHTSTTGGGCBCCGGGTTSCH--HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcHH-HHHhCcchhhhhhccCCCcCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 111111111000 011 11111111 24444 899999999988764 444
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+...+. .++|+|+++|..+. +. .||+++.|++++++..|
T Consensus 519 ~l~~~~-~~~t~i~itH~l~~------------------~~-~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 519 ALDVLS-KDRTTLIVAHRLST------------------IT-HADKIVVIENGHIVETG 557 (578)
T ss_dssp HHHHHT-TTSEEEEECSSGGG------------------TT-TCSEEEEEETTEEEEEE
T ss_pred HHHHHc-CCCEEEEEecCHHH------------------HH-cCCEEEEEECCEEEEEC
Confidence 444443 47899999997653 33 38999999887665544
No 74
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.29 E-value=1.8e-12 Score=132.84 Aligned_cols=156 Identities=17% Similarity=0.230 Sum_probs=103.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+++++++.+|++.++. .|+.+++....
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~-i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~ 444 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT-ISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADD 444 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEE-EEETTEETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcE-EEECCEEhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCC
Confidence 7899999999999999999999999988887776 6777754432 356678999999987765 47766654311
Q ss_pred ----------HHHhcCCceEEEEec----ccccCC--CCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 130 ----------TLIRSGSVDVVVVDS----VAALVP--KGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 130 ----------~~~~~~~~~lvviDs----l~~l~~--~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
..++.....- .++. +..... ...+++ |++|+...||++...
T Consensus 445 ~~~~~~~~~~~~~~~~~l~~-~~~~l~~g~~~~~~~~~~~LSg--Gq~qrv~iAral~~~p~illlDEpts~LD~~~~~~ 521 (595)
T 2yl4_A 445 PSSVTAEEIQRVAEVANAVA-FIRNFPQGFNTVVGEKGVLLSG--GQKQRIAIARALLKNPKILLLDEATSALDAENEYL 521 (595)
T ss_dssp TTTSCHHHHHHHHHHTTCHH-HHHTSSSGGGCBCSSSSCCCCH--HHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCHH-HHHhCcccccccccCCCCcCCH--HHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHH
Confidence 1111000000 0011 111111 134444 899999999998764
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.++...+.+ ++|+|+++|..+. +. .||+++.|++++++..|
T Consensus 522 i~~~l~~~~~-~~tvi~itH~~~~------------------~~-~~d~i~~l~~G~i~~~g 563 (595)
T 2yl4_A 522 VQEALDRLMD-GRTVLVIAHRLST------------------IK-NANMVAVLDQGKITEYG 563 (595)
T ss_dssp HHHHHHHHHT-TSEEEEECCCHHH------------------HH-HSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHhc-CCEEEEEecCHHH------------------HH-cCCEEEEEECCEEEEEC
Confidence 4454444444 8999999996543 43 48999999887655443
No 75
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.28 E-value=1.1e-12 Score=134.25 Aligned_cols=157 Identities=16% Similarity=0.153 Sum_probs=102.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+++++++.+|++.++.. |+.+++...
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~-i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~ 443 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR-VEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRED 443 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEE-EEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcE-EEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCCC
Confidence 7899999999999999999999999998887776 6777765432 3567889999999877643 555554221
Q ss_pred ------HHHHhcCCce-EE--EEecccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 129 ------DTLIRSGSVD-VV--VVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 129 ------~~~~~~~~~~-lv--viDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
....+..... .+ .-+.+..... ...+++ |++|+...||++... +.+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg--GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~ 521 (587)
T 3qf4_A 444 ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG--GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDG 521 (587)
T ss_dssp CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH--HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 1111100000 00 0011111111 134444 899999999988754 4444
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+. .++|+|+++|..+. +. .||+++.|++++++..|
T Consensus 522 l~~~~-~~~tvi~itH~l~~------------------~~-~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 522 LKRYT-KGCTTFIITQKIPT------------------AL-LADKILVLHEGKVAGFG 559 (587)
T ss_dssp HHHHS-TTCEEEEEESCHHH------------------HT-TSSEEEEEETTEEEEEE
T ss_pred HHHhC-CCCEEEEEecChHH------------------HH-hCCEEEEEECCEEEEEC
Confidence 44443 48999999997643 32 58999999877655544
No 76
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.24 E-value=2.5e-12 Score=120.11 Aligned_cols=142 Identities=17% Similarity=0.244 Sum_probs=88.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV------ 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~------ 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++ +++|.+|+..++. .++.+.+...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~-I~~~g----------~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~ 128 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSG----------RISFCSQNSWIMP-GTIKENIIGVSYDEYR 128 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEE-EECCS----------CEEEECSSCCCCS-SBHHHHHHTTCCCHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE-EEECC----------EEEEEeCCCccCc-ccHHHHhhCcccchHH
Confidence 7799999999999999999999999998887776 45554 4889998877665 3777765410
Q ss_pred -HHHHhcCCceEEEEeccccc----C--CCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHh-h-
Q 017792 129 -DTLIRSGSVDVVVVDSVAAL----V--PKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSL-S- 182 (366)
Q Consensus 129 -~~~~~~~~~~lvviDsl~~l----~--~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l-~- 182 (366)
..........- .++.+... . +...+++ |++|+...||+++.. -..+...+ +
T Consensus 129 ~~~~~~~~~l~~-~l~~~~~~~~~~~~~~~~~LSg--Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~ 205 (290)
T 2bbs_A 129 YRSVIKACQLEE-DISKFAEKDNIVLGEGGITLSG--GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205 (290)
T ss_dssp HHHHHHHTTCHH-HHHTSTTGGGCBC----CCCCH--HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCC
T ss_pred HHHHHHHhChHH-HHHhccccccchhcCccCcCCH--HHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 00111000000 00111000 0 0134554 888888888887754 22333321 1
Q ss_pred -hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEec
Q 017792 183 -LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 230 (366)
Q Consensus 183 -~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~ 230 (366)
..++|||+++|.... +. .||+++.|.++.
T Consensus 206 ~~~~~tviivtHd~~~------------------~~-~~d~i~~l~~G~ 235 (290)
T 2bbs_A 206 LMANKTRILVTSKMEH------------------LK-KADKILILHEGS 235 (290)
T ss_dssp CTTTSEEEEECCCHHH------------------HH-HSSEEEEEETTE
T ss_pred hhCCCEEEEEecCHHH------------------HH-cCCEEEEEECCe
Confidence 238999999997543 33 489888887654
No 77
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.19 E-value=3.8e-12 Score=130.29 Aligned_cols=142 Identities=15% Similarity=0.202 Sum_probs=92.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH-HHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV-DTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~-~~~~~ 133 (366)
+++|++++|+||||||||||++.+++.+.+..|.+.+ ...++|.+|+.......++.+++... .....
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~ 447 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSKLN 447 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----------eeEEEEEecCccCCCCCcHHHHHHhhhccCCC
Confidence 5789999999999999999999999988887776433 13588999987665666787766543 11110
Q ss_pred cC-----CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-hcCcE
Q 017792 134 SG-----SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS-LSQTI 187 (366)
Q Consensus 134 ~~-----~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~-~~~~t 187 (366)
.. -...+-++....- +-..+++ |++|+...||+++.. +.++.+.+. +.|.|
T Consensus 448 ~~~~~~~~l~~~~l~~~~~~-~~~~LSG--Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t 524 (607)
T 3bk7_A 448 SNFYKTELLKPLGIIDLYDR-NVEDLSG--GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 524 (607)
T ss_dssp CHHHHHHTHHHHTCTTTTTS-BGGGCCH--HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHcCCchHhcC-ChhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 00 0000001111111 1234444 788888888877653 445554443 56999
Q ss_pred EEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 188 LIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 188 VI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
||+++|.... +..+||+++.|+.
T Consensus 525 vi~vsHd~~~------------------~~~~adrv~vl~~ 547 (607)
T 3bk7_A 525 ALVVEHDVLM------------------IDYVSDRLIVFEG 547 (607)
T ss_dssp EEEECSCHHH------------------HHHHCSEEEEEEE
T ss_pred EEEEeCCHHH------------------HHHhCCEEEEEcC
Confidence 9999997764 5667899988874
No 78
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.19 E-value=4e-12 Score=128.53 Aligned_cols=142 Identities=15% Similarity=0.204 Sum_probs=92.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH-HHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV-DTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~-~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|.+.+ ...+++.+|+.......++.+++... .....
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~ 377 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-----------DLTVAYKPQYIKADYEGTVYELLSKIDASKLN 377 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-----------CceEEEEecCCcCCCCCcHHHHHHhhhccCCC
Confidence 4789999999999999999999999988877776432 13588888887665566777765543 11100
Q ss_pred cC-----CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-hcCcE
Q 017792 134 SG-----SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS-LSQTI 187 (366)
Q Consensus 134 ~~-----~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~-~~~~t 187 (366)
.. -...+-+.....- +...+++ |++|+...||+++.. +..+...+. +.|.|
T Consensus 378 ~~~~~~~~l~~~~l~~~~~~-~~~~LSG--Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~t 454 (538)
T 1yqt_A 378 SNFYKTELLKPLGIIDLYDR-EVNELSG--GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 454 (538)
T ss_dssp CHHHHHHTTTTTTCGGGTTS-BGGGCCH--HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHcCChhhhcC-ChhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 00 0000001111111 1234444 788888888877653 445554443 56999
Q ss_pred EEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 188 LIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 188 VI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
||+++|.... +..+||+++.|+.
T Consensus 455 vi~vsHd~~~------------------~~~~~drv~vl~~ 477 (538)
T 1yqt_A 455 ALVVEHDVLM------------------IDYVSDRLMVFEG 477 (538)
T ss_dssp EEEECSCHHH------------------HHHHCSEEEEEEE
T ss_pred EEEEeCCHHH------------------HHHhCCEEEEEeC
Confidence 9999998765 5667899988875
No 79
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.17 E-value=2.6e-11 Score=122.45 Aligned_cols=144 Identities=16% Similarity=0.215 Sum_probs=90.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR- 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~- 133 (366)
+++|++++|+||||||||||++.+++...+..|.+. ++. ..+++.+|++......++.+.+........
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~~---------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 360 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVT-PEK---------QILSYKPQRIFPNYDGTVQQYLENASKDALS 360 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE-SSC---------CCEEEECSSCCCCCSSBHHHHHHHHCSSTTC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECC---------eeeEeechhcccccCCCHHHHHHHhhhhccc
Confidence 689999999999999999999999999888878743 321 246677776554445566666544210000
Q ss_pred cCC------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-hhcCc
Q 017792 134 SGS------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-SLSQT 186 (366)
Q Consensus 134 ~~~------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~~~~~ 186 (366)
... ...+-+.....-. ...+++ |++|+...||+++.. +.++.+.+ ++.++
T Consensus 361 ~~~~~~~~~l~~~~l~~~~~~~-~~~LSG--Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~ 437 (538)
T 3ozx_A 361 TSSWFFEEVTKRLNLHRLLESN-VNDLSG--GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437 (538)
T ss_dssp TTSHHHHHTTTTTTGGGCTTSB-GGGCCH--HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHcCCHHHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 000 0000001111111 234444 778888888877653 44444444 35699
Q ss_pred EEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 187 ILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 187 tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
|||+++|.... +..+||+++.|+..
T Consensus 438 tvi~vsHdl~~------------------~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 438 VTFIIDHDLSI------------------HDYIADRIIVFKGE 462 (538)
T ss_dssp EEEEECSCHHH------------------HHHHCSEEEEEEEE
T ss_pred EEEEEeCCHHH------------------HHHhCCEEEEEeCC
Confidence 99999998765 56689999999863
No 80
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.13 E-value=3.3e-11 Score=133.21 Aligned_cols=155 Identities=15% Similarity=0.231 Sum_probs=100.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+... ..+++++++++|++.++. .|+.+++..
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~ 1133 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS-VFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS 1133 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEE-EESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC
Confidence 7899999999999999999999999988887776 7788765433 356678999999886653 344444311
Q ss_pred -------HHHHHhcCCceEEEEe----cccccCC--CCccCCccchhhHHHHHHHHHHH--------------------H
Q 017792 128 -------VDTLIRSGSVDVVVVD----SVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------L 174 (366)
Q Consensus 128 -------~~~~~~~~~~~lvviD----sl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L 174 (366)
+..........- .++ .+..... ...+++ |++|+...||++... +
T Consensus 1134 ~~~~~~~i~~~~~~~~~~~-~i~~l~~gldt~vge~G~~LSg--Gq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i 1210 (1284)
T 3g5u_A 1134 RVVSYEEIVRAAKEANIHQ-FIDSLPDKYNTRVGDKGTQLSG--GQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210 (1284)
T ss_dssp CCCCHHHHHHHHHHHTCHH-HHSSTTTGGGCBCSTTSCSSCH--HHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcHH-HHHhCccccccccCCCCCccCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 111110000000 011 1111111 124554 899999999998764 4
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
.++...+ ..|+|||+++|..+. +.. ||+++.|++++++..
T Consensus 1211 ~~~l~~~-~~~~tvi~isH~l~~------------------i~~-~dri~vl~~G~i~~~ 1250 (1284)
T 3g5u_A 1211 QEALDKA-REGRTCIVIAHRLST------------------IQN-ADLIVVIQNGKVKEH 1250 (1284)
T ss_dssp HHHHHHH-SSSSCEEEECSCTTG------------------GGS-CSEEEEEETBEEEEE
T ss_pred HHHHHHh-CCCCEEEEEecCHHH------------------HHc-CCEEEEEECCEEEEE
Confidence 4444443 348999999997754 333 899999987765443
No 81
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.12 E-value=4.1e-11 Score=132.49 Aligned_cols=156 Identities=19% Similarity=0.224 Sum_probs=101.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+++.+|+++|++.++.. |+.+++.+-
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~-i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~ 490 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM-VSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRED 490 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEE-EEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCCC
Confidence 7899999999999999999999999998887776 6777754322 4567789999999987754 776665432
Q ss_pred ------HHHHhcCCceEEEEe----cccccCCC--CccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 129 ------DTLIRSGSVDVVVVD----SVAALVPK--GELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 129 ------~~~~~~~~~~lvviD----sl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
..........- .++ .+...... ..+++ |++|+...||++... +..
T Consensus 491 ~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g~~LSg--Gq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~ 567 (1284)
T 3g5u_A 491 VTMDEIEKAVKEANAYD-FIMKLPHQFDTLVGERGAQLSG--GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567 (1284)
T ss_dssp CCHHHHHHHHHHTTCHH-HHHHSTTGGGCCCSSSSCSSCH--HHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcHH-HHHhccccccccccCCCCccCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 11111111000 011 11111111 23444 899999999988764 344
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
....+ ..|+|+|+++|..+. +.. ||+++.|++++++..|
T Consensus 568 ~l~~~-~~~~t~i~itH~l~~------------------i~~-~d~i~vl~~G~i~~~g 606 (1284)
T 3g5u_A 568 ALDKA-REGRTTIVIAHRLST------------------VRN-ADVIAGFDGGVIVEQG 606 (1284)
T ss_dssp HHHHH-HTTSEEEEECSCHHH------------------HTT-CSEEEECSSSCCCCEE
T ss_pred HHHHH-cCCCEEEEEecCHHH------------------HHc-CCEEEEEECCEEEEEC
Confidence 43333 248999999997654 322 7788888777655443
No 82
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.10 E-value=1.1e-10 Score=129.44 Aligned_cols=154 Identities=18% Similarity=0.215 Sum_probs=103.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCC-------------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP------------- 118 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~------------- 118 (366)
|++|+.++|+|++|||||||+..+.+.+.+..|. +++|+.+..+ ..+++++++++|++.++..
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~-I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~ 1180 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE-IFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPS 1180 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSE-EEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCccCCCCE-EEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCC
Confidence 7899999999999999999999999999888886 7888876544 5778899999998876532
Q ss_pred -CCHHHHHHHHHH-----HHhcCCceEEEEecccccCCC--CccCCccchhhHHHHHHHHHHH-----------------
Q 017792 119 -DCGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 119 -~~~e~~l~~~~~-----~~~~~~~~lvviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
.+-+++.+.+.. .+.... +.+...... ..+++ |++|+...||++.+.
T Consensus 1181 ~~sd~ei~~Al~~a~l~~~I~~Lp------~GldT~vge~G~~LSg--GQrQriaiARAllr~~~ILiLDEaTSaLD~~t 1252 (1321)
T 4f4c_A 1181 SVTMAQVEEAARLANIHNFIAELP------EGFETRVGDRGTQLSG--GQKQRIAIARALVRNPKILLLDEATSALDTES 1252 (1321)
T ss_dssp TSCHHHHHHHHHHTTCHHHHHTST------TTTCSEETTTSCSSCH--HHHHHHHHHHHHHSCCSEEEEESCCCSTTSHH
T ss_pred CCCHHHHHHHHHHhCChHHHHcCc------CCCCCEecCCCcccCH--HHHHHHHHHHHHHhCCCEEEEeCccccCCHHH
Confidence 133344333322 121111 111222212 23444 899999999988754
Q ss_pred HHHHHHHhhh--cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 LRKLSHSLSL--SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 L~~L~~~l~~--~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
=+.+...+++ .++|+|+|+|..+.+. .||+++.|++|+++..|+
T Consensus 1253 E~~Iq~~l~~~~~~~TvI~IAHRLsTi~-------------------~aD~I~Vld~G~IvE~Gt 1298 (1321)
T 4f4c_A 1253 EKVVQEALDRAREGRTCIVIAHRLNTVM-------------------NADCIAVVSNGTIIEKGT 1298 (1321)
T ss_dssp HHHHHHHHTTTSSSSEEEEECSSSSTTT-------------------TCSEEEEESSSSEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEeccCHHHHH-------------------hCCEEEEEECCEEEEECC
Confidence 1122222232 5899999999665321 379999999888776664
No 83
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.05 E-value=6.7e-11 Score=131.07 Aligned_cols=154 Identities=17% Similarity=0.190 Sum_probs=98.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCC------------C
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP------------D 119 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~------------~ 119 (366)
+++|+.++|+||+|||||||+..+.+.+.+..|. +++|+.+..+ ..+++++++++|++.++.. .
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~-I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~ 519 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGK-ITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGI 519 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEE-EEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccccccCc-ccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccc
Confidence 7899999999999999999999999999888886 7788765433 4677889999998876532 2
Q ss_pred CHHHHHHHHHH-----HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------H
Q 017792 120 CGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 174 (366)
Q Consensus 120 ~~e~~l~~~~~-----~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L 174 (366)
+-+++.+.+.. .+.... +............-+.|++|+...||++.+. +
T Consensus 520 ~~~~v~~a~~~a~l~~~i~~lp------~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i 593 (1321)
T 4f4c_A 520 TREEMVAACKMANAEKFIKTLP------NGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIV 593 (1321)
T ss_dssp CHHHHHHHHHHTTCHHHHHHST------TTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHH
T ss_pred hHHHHHHHHHHccchhHHHcCC------CCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHH
Confidence 33333333221 111100 1111122222222223788888888876543 2
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.+....+. .|+|+|+++|..+-+ ..||+++.|++++++..|
T Consensus 594 ~~~l~~~~-~~~T~iiiaHrls~i-------------------~~aD~Iivl~~G~ive~G 634 (1321)
T 4f4c_A 594 QQALDKAA-KGRTTIIIAHRLSTI-------------------RNADLIISCKNGQVVEVG 634 (1321)
T ss_dssp HHHHHHHH-TTSEEEEECSCTTTT-------------------TTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHh-CCCEEEEEcccHHHH-------------------HhCCEEEEeeCCeeeccC
Confidence 22222222 489999999976532 247888899888776654
No 84
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.02 E-value=3.9e-11 Score=122.69 Aligned_cols=139 Identities=12% Similarity=0.179 Sum_probs=81.6
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH----
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV---- 128 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~---- 128 (366)
|-+++|++++|+||||||||||++.+++...+..|..+ . ...+++.+|++....+.++.+++...
T Consensus 373 G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-------~----~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~ 441 (608)
T 3j16_B 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI-------P----KLNVSMKPQKIAPKFPGTVRQLFFKKIRGQ 441 (608)
T ss_dssp EECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-------C----SCCEEEECSSCCCCCCSBHHHHHHHHCSST
T ss_pred CccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-------c----CCcEEEecccccccCCccHHHHHHHHhhcc
Confidence 55788899999999999999999999998887766410 0 12345555554433333444432210
Q ss_pred -------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 129 -------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 129 -------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
...+.... +....... ...+++ |++|+...||+++.. +.++.+.+
T Consensus 442 ~~~~~~~~~~l~~l~-----l~~~~~~~-~~~LSG--GqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l 513 (608)
T 3j16_B 442 FLNPQFQTDVVKPLR-----IDDIIDQE-VQHLSG--GELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513 (608)
T ss_dssp TTSHHHHHHTHHHHT-----STTTSSSB-SSSCCH--HHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHcC-----ChhhhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 00000000 01111111 233444 666666666665432 44444443
Q ss_pred -hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 182 -SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 182 -~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
++.|.|||+++|.... +..+||+++.|..
T Consensus 514 ~~~~g~tviivtHdl~~------------------~~~~aDrvivl~~ 543 (608)
T 3j16_B 514 ILHNKKTAFIVEHDFIM------------------ATYLADKVIVFEG 543 (608)
T ss_dssp HHHHTCEEEEECSCHHH------------------HHHHCSEEEECEE
T ss_pred HHhCCCEEEEEeCCHHH------------------HHHhCCEEEEEeC
Confidence 3569999999998765 5667899998875
No 85
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.00 E-value=1e-10 Score=118.27 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=30.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 88 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~ 88 (366)
+++|++++|+||||||||||++.+++.+.+..|.
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 5799999999999999999999999988777665
No 86
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.96 E-value=1.9e-09 Score=96.61 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=91.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
.+|.++.++|++|+||||++++++..+...+..|+++....... ...+.++|+......+ ....+++..+.....
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~---~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEV---ESAPEILNYIMSNSF 86 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEE---SSTHHHHHHHHSTTS
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCcccccc---CCHHHHHHHHHHHhh
Confidence 46889999999999999999999999988888899886543211 1234455654444433 234566666665555
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCC
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGG 213 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG 213 (366)
...+++|+||+++.+.. .+...++.|. +.+++||++.|..+-.+. .|..+
T Consensus 87 ~~~~dvViIDEaQ~l~~------------------~~ve~l~~L~----~~gi~Vil~Gl~~df~~~-~F~~~------- 136 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDD------------------RICEVANILA----ENGFVVIISGLDKNFKGE-PFGPI------- 136 (223)
T ss_dssp CTTCCEEEECSGGGSCT------------------HHHHHHHHHH----HTTCEEEEECCSBCTTSS-BCTTH-------
T ss_pred CCCCCEEEEecCccCcH------------------HHHHHHHHHH----hCCCeEEEEeccccccCC-cCCCc-------
Confidence 56789999999987541 1112334443 349999999997754222 12222
Q ss_pred ceeeeeceEEEEEEE
Q 017792 214 NALKFYASVRLNIKR 228 (366)
Q Consensus 214 ~~l~~~ad~~i~l~~ 228 (366)
..+..+||.+..|+.
T Consensus 137 ~~Ll~lAD~V~el~~ 151 (223)
T 2b8t_A 137 AKLFTYADKITKLTA 151 (223)
T ss_dssp HHHHHHCSEEEECCE
T ss_pred HHHHHHhheEeecce
Confidence 125568888877653
No 87
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.95 E-value=1.5e-10 Score=118.51 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=31.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 88 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~ 88 (366)
+++|++++|+||||||||||++.+++.+.+..|.
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 5799999999999999999999999988877665
No 88
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.87 E-value=2.9e-09 Score=99.88 Aligned_cols=86 Identities=22% Similarity=0.225 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----H---HH--HhhcccccCcceecCCCCHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----P---SL--AETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~---~~--~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+|++++|+||||||||||+..+++.+.+.+|.|.+.+.+ ... . .+ ...+++.+|+....+..++.+.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D-~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD-TFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC-CSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeec-CCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999999999999999999988887666544 322 1 22 2346777776544333334444433
Q ss_pred HHHHHhcCCceEEEEecccc
Q 017792 128 VDTLIRSGSVDVVVVDSVAA 147 (366)
Q Consensus 128 ~~~~~~~~~~~lvviDsl~~ 147 (366)
... ...+.+++|....
T Consensus 180 ~~~----~~~d~~llDt~G~ 195 (304)
T 1rj9_A 180 MKA----RGYDLLFVDTAGR 195 (304)
T ss_dssp HHH----HTCSEEEECCCCC
T ss_pred HHh----CCCCEEEecCCCC
Confidence 221 2356778886543
No 89
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.87 E-value=1.3e-09 Score=113.09 Aligned_cols=21 Identities=43% Similarity=0.841 Sum_probs=20.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLA 75 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~ 75 (366)
+++|++++|+||||||||||+
T Consensus 41 i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 41 IPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHh
Confidence 789999999999999999996
No 90
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.83 E-value=5.5e-09 Score=105.44 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=30.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 88 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~ 88 (366)
.++|++++|+||||||||||++.+++.+.+..|.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~ 55 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD 55 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 4589999999999999999999999988887665
No 91
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.82 E-value=5.6e-09 Score=97.91 Aligned_cols=87 Identities=17% Similarity=0.147 Sum_probs=55.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH-------HHH--hhcccccCcce-ecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-------SLA--ETIGVKTENLL-LAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~-------~~~--~~ig~~~~~~~-~~~~~~~e~~ 124 (366)
+++|++++|+||||||||||+..+++.+.+.+|.+.+.+ .+.+.. .++ ..+++.+|+.. ..+..++.+.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g-~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~ 175 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA-GDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 175 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC-CCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe-ecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHH
Confidence 568999999999999999999999999998888865554 444432 222 34777777654 3333344455
Q ss_pred HHHHHHHHhcCCceEEEEeccc
Q 017792 125 LSLVDTLIRSGSVDVVVVDSVA 146 (366)
Q Consensus 125 l~~~~~~~~~~~~~lvviDsl~ 146 (366)
+..... ...+.+++|.+.
T Consensus 176 l~~~~~----~~~d~~lldt~g 193 (302)
T 3b9q_A 176 VKRGKE----EGYDVVLCDTSG 193 (302)
T ss_dssp HHHHHH----TTCSEEEECCCC
T ss_pred HHHHHH----cCCcchHHhcCC
Confidence 443221 123455666543
No 92
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.81 E-value=5.8e-09 Score=111.07 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=24.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
+++|++++|+||||||||||++.+++
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 77999999999999999999999984
No 93
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.80 E-value=1e-08 Score=98.25 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=56.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH-------HH--HhhcccccCcce-ecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-------SL--AETIGVKTENLL-LAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~-------~~--~~~ig~~~~~~~-~~~~~~~e~~ 124 (366)
+++|++++|+||||||||||+..+++.+.+.+|.+.+.+ .+.+.. .+ ...+++.+|+.. ..+..++.+.
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g-~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~ 232 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA-GDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 232 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC-CCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec-ccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHH
Confidence 458999999999999999999999999998888865554 444432 22 234777777654 3333344454
Q ss_pred HHHHHHHHhcCCceEEEEeccc
Q 017792 125 LSLVDTLIRSGSVDVVVVDSVA 146 (366)
Q Consensus 125 l~~~~~~~~~~~~~lvviDsl~ 146 (366)
+..... ...+.+++|.+.
T Consensus 233 l~~~~~----~~~d~~lldt~G 250 (359)
T 2og2_A 233 VKRGKE----EGYDVVLCDTSG 250 (359)
T ss_dssp HHHHHH----TTCSEEEEECCC
T ss_pred HHHHHh----CCCHHHHHHhcC
Confidence 443221 134556667544
No 94
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.80 E-value=5.7e-09 Score=106.67 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=31.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeE
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYC 89 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~v 89 (366)
+++|++++|+||||||||||++.+++.+.+..|.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 56899999999999999999999999888877763
No 95
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.78 E-value=5.1e-10 Score=110.83 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=44.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEeCCCCCCHHHHhhcccccCcce
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDAEHALDPSLAETIGVKTENLL 114 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg-~vl~id~e~~~~~~~~~~ig~~~~~~~ 114 (366)
+++|++++|+||||||||||++.+++.+.+.+| ..+++++. ..+.+++.+|++.
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~------~~~~i~~vpq~~~ 189 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD------PQQPIFTVPGCIS 189 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC------TTSCSSSCSSCCE
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC------ccCCeeeeccchh
Confidence 679999999999999999999999999988877 65677762 1355777777663
No 96
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.76 E-value=3.1e-08 Score=83.04 Aligned_cols=101 Identities=21% Similarity=0.233 Sum_probs=68.2
Q ss_pred ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCH
Q 017792 42 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCG 121 (366)
Q Consensus 42 G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~ 121 (366)
+...+=.+|. .+ +|+.+.|+||+|+|||||+..+++.+.+.|..++|++.......
T Consensus 23 ~n~~~~~~l~--~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------------------- 78 (149)
T 2kjq_A 23 ENAELVYVLR--HK-HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------------------- 78 (149)
T ss_dssp CTHHHHHHCC--CC-CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------------
T ss_pred ccHHHHHHHH--hc-CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------------
Confidence 4444444555 34 89999999999999999999999988876666899987654322
Q ss_pred HHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcE-EEEEecC
Q 017792 122 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTI-LIFINQV 194 (366)
Q Consensus 122 e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~t-VI~i~h~ 194 (366)
.+. .+++++++|.+..+.+ . .. ..|..+...+.+.+.+ +|+++|.
T Consensus 79 --------~~~--~~~~lLilDE~~~~~~---------~-----~~----~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 --------DAA--FEAEYLAVDQVEKLGN---------E-----EQ----ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp --------GGG--GGCSEEEEESTTCCCS---------H-----HH----HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred --------HHH--hCCCEEEEeCccccCh---------H-----HH----HHHHHHHHHHHHcCCcEEEEECCC
Confidence 011 2478999999877542 1 11 2344444444556777 8888884
No 97
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.76 E-value=1.9e-09 Score=114.84 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=33.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
+++|++++|+||||||||||++.+++.+.+..|. ++++
T Consensus 696 I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~-I~~~ 733 (986)
T 2iw3_A 696 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE-VYTH 733 (986)
T ss_dssp EETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEE-EEEC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEEc
Confidence 7799999999999999999999999998887776 4554
No 98
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.74 E-value=8e-08 Score=91.01 Aligned_cols=88 Identities=22% Similarity=0.225 Sum_probs=57.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcc--cccCcceecCCCCHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIG--VKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig--~~~~~~~~~~~~~~e~~l~~ 127 (366)
++|++++|+|||||||||++..+++.+.+.++.+.+.+.+-... ..+++++| +.++.....+..++.+.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999877766543221 13456666 44444333322334444433
Q ss_pred HHHHHhcCCceEEEEecccc
Q 017792 128 VDTLIRSGSVDVVVVDSVAA 147 (366)
Q Consensus 128 ~~~~~~~~~~~lvviDsl~~ 147 (366)
... ...+++++|....
T Consensus 207 ~~~----~~~d~vliDtaG~ 222 (328)
T 3e70_C 207 AKA----RGIDVVLIDTAGR 222 (328)
T ss_dssp HHH----HTCSEEEEEECCS
T ss_pred HHh----ccchhhHHhhccc
Confidence 221 2456777887544
No 99
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.72 E-value=7.5e-08 Score=95.37 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=61.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH-------HH--HhhcccccCcceecCCCCHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-------SL--AETIGVKTENLLLAQPDCGEQAL 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~-------~~--~~~ig~~~~~~~~~~~~~~e~~l 125 (366)
+.+|++++|+|+||||||||+..+++.+.+.+|.|.+.+.. .+.. .+ ...+++.+++.......++.+.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D-~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l 368 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD-TFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAI 368 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCC-TTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCc-ccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHH
Confidence 56899999999999999999999999998888886665554 3331 12 34577777765433223344444
Q ss_pred HHHHHHHhcCCceEEEEecccccC
Q 017792 126 SLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 126 ~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
.... ....++++||....+.
T Consensus 369 ~~a~----~~~~DvVLIDTaGrl~ 388 (503)
T 2yhs_A 369 QAAK----ARNIDVLIADTAGRLQ 388 (503)
T ss_dssp HHHH----HTTCSEEEECCCCSCC
T ss_pred HHHH----hcCCCEEEEeCCCccc
Confidence 3332 2457888999876553
No 100
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.69 E-value=8.5e-08 Score=82.36 Aligned_cols=111 Identities=18% Similarity=0.173 Sum_probs=66.0
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
-.+++|+.+.|+||||+|||||+..+++.+.+. |..++|++..+.... +..... . ... .+.+..+
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~----~----~~~--~~~~~~~--- 98 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR-LKHLMD----E----GKD--TKFLKTV--- 98 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH-HHHHHH----H----TCC--SHHHHHH---
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH-HHHHhc----C----chH--HHHHHHh---
Confidence 456789999999999999999999999998744 546777664321111 111100 0 000 0222222
Q ss_pred HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCc
Q 017792 132 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 196 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~ 196 (366)
.+++++++|.+..... + . ..+ ..+..+.....+.++++|+++|...
T Consensus 99 ---~~~~llilDE~~~~~~----~----~-----~~~---~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 99 ---LNSPVLVLDDLGSERL----S----D-----WQR---ELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp ---HTCSEEEEETCSSSCC----C----H-----HHH---HHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred ---cCCCEEEEeCCCCCcC----C----H-----HHH---HHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 1578999999874321 0 0 011 2344444444457899999999654
No 101
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.65 E-value=2e-08 Score=104.12 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=22.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~ 79 (366)
|++|++++|+||||||||||++.++
T Consensus 345 I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 345 IPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 7799999999999999999986554
No 102
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.62 E-value=2.3e-09 Score=95.08 Aligned_cols=58 Identities=24% Similarity=0.242 Sum_probs=40.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcc
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL 113 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~ 113 (366)
++++|++++|+||||||||||++.+++. .+..|.+...+.... ...+.+.+|+.+|+.
T Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~-~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 18 AIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRP-AVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEEC-SCCTTCCCCSSCC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCC-chhhhcceEEecCCH
Confidence 4689999999999999999999999999 887776532111111 112345688888764
No 103
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.62 E-value=1.5e-08 Score=99.73 Aligned_cols=106 Identities=17% Similarity=0.187 Sum_probs=67.4
Q ss_pred cccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC---CCC--------HHHHhhc
Q 017792 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALD--------PSLAETI 106 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~---~~~--------~~~~~~i 106 (366)
.+.||...||.++. +++|++++|+||||||||||+..+++...+..+ ++.+.++. ..+ ..+.+.+
T Consensus 140 ~~~tg~~vld~vl~---i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G-~i~~~G~r~~ev~~~~~~~~~~~~l~r~i 215 (438)
T 2dpy_A 140 VLDTGVRAINALLT---VGRGQRMGLFAGSGVGKSVLLGMMARYTRADVI-VVGLIGERGREVKDFIENILGPDGRARSV 215 (438)
T ss_dssp BCCCSCHHHHHHSC---CBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEE-EEEEESCCHHHHHHHHHTTTHHHHHHTEE
T ss_pred ecCCCceEEeeeEE---ecCCCEEEEECCCCCCHHHHHHHHhcccCCCeE-EEEEeceecHHHHHHHHhhccccccCceE
Confidence 45678999999977 999999999999999999999999998876655 46666652 111 1244556
Q ss_pred ccccCc-ceecCCCCHHHHHHHHHHHHhc-CCceEEEEecccc
Q 017792 107 GVKTEN-LLLAQPDCGEQALSLVDTLIRS-GSVDVVVVDSVAA 147 (366)
Q Consensus 107 g~~~~~-~~~~~~~~~e~~l~~~~~~~~~-~~~~lvviDsl~~ 147 (366)
++.+|. .......++.+........... ...-+.++|++..
T Consensus 216 ~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~ 258 (438)
T 2dpy_A 216 VIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTR 258 (438)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHH
Confidence 777763 2222223444444333333322 2223455676543
No 104
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.62 E-value=4.5e-09 Score=90.06 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALH 77 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~ 77 (366)
+++|++++|+||||||||||++.
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 67999999999999999999994
No 105
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.53 E-value=5.6e-07 Score=82.47 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=34.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEe
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFID 93 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id 93 (366)
+++|++++|+||||||||||+..+++.+.+. .|.+++.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 7899999999999999999999999999887 78765554
No 106
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.53 E-value=2.3e-07 Score=88.76 Aligned_cols=113 Identities=11% Similarity=0.070 Sum_probs=66.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
.+|.+++|+||||||||||+..+++.+.+. ++.++.+.. ..+.......++..|........+..+. +...+ .
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed--~~e~~~~~~~~~v~q~~~~~~~~~~~~~---La~aL-~ 194 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED--PIEFVHESKKCLVNQREVHRDTLGFSEA---LRSAL-R 194 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEES--SCCSCCCCSSSEEEEEEBTTTBSCHHHH---HHHHT-T
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccC--cHHhhhhccccceeeeeeccccCCHHHH---HHHHh-h
Confidence 566799999999999999999999999887 565544432 2211111112222222211122344443 33333 3
Q ss_pred CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccc
Q 017792 135 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 198 (366)
Q Consensus 135 ~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~ 198 (366)
.+++++++|.+.... ....+.++ ...|.+||+++|..+..
T Consensus 195 ~~PdvillDEp~d~e--------------------~~~~~~~~----~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 EDPDIILVGEMRDLE--------------------TIRLALTA----AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCSEEEESCCCSHH--------------------HHHHHHHH----HHTTCEEEEEESCSSHH
T ss_pred hCcCEEecCCCCCHH--------------------HHHHHHHH----HhcCCEEEEEEccChHH
Confidence 579999999986210 01111222 34699999999987653
No 107
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.47 E-value=2.2e-07 Score=98.44 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=23.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~ 79 (366)
|++|++++|+|+||||||||++.++
T Consensus 647 I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 647 IPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999998864
No 108
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.47 E-value=9.7e-08 Score=100.60 Aligned_cols=29 Identities=28% Similarity=0.486 Sum_probs=25.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHH-HHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALH-VIAEA 82 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~-l~~~~ 82 (366)
-|++|++++|+|+||||||||++. +++.+
T Consensus 519 ~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 519 RFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp EEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred EEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 378999999999999999999996 66554
No 109
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.46 E-value=2.1e-07 Score=90.55 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=24.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
+.+| +++|+|+||||||||+..+...+.
T Consensus 58 ~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 58 LGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp CCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 6789 999999999999999988877664
No 110
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.45 E-value=1.6e-07 Score=99.83 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=20.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLAL 76 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~ 76 (366)
+++|++++|+|+||||||||+.
T Consensus 607 I~~Geiv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 607 IPLGVFVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp EESSSEEEEECSTTSSHHHHHH
T ss_pred EcCCcEEEEEccCCCChhhhHH
Confidence 7899999999999999999974
No 111
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.41 E-value=9.2e-07 Score=94.05 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=23.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~ 79 (366)
|++|++++|+|+||||||||++.++
T Consensus 665 I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 665 FPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999999864
No 112
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.40 E-value=3.3e-07 Score=86.84 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=51.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++.+.+..|. +.++...... +.+.+.+++..+ ...+....+.. . +
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~-i~i~~~~e~~~~~~~~~i~~~~g-----gg~~~r~~la~--a-L- 237 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERI-ISIEDTEEIVFKHHKNYTQLFFG-----GNITSADCLKS--C-L- 237 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCE-EEEESSCCCCCSSCSSEEEEECB-----TTBCHHHHHHH--H-T-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcE-EEECCeeccccccchhEEEEEeC-----CChhHHHHHHH--H-h-
Confidence 4579999999999999999999999988877665 5565543221 111122232221 22233333322 2 2
Q ss_pred cCCceEEEEecccc
Q 017792 134 SGSVDVVVVDSVAA 147 (366)
Q Consensus 134 ~~~~~lvviDsl~~ 147 (366)
..+++++++|.+..
T Consensus 238 ~~~p~ilildE~~~ 251 (330)
T 2pt7_A 238 RMRPDRIILGELRS 251 (330)
T ss_dssp TSCCSEEEECCCCS
T ss_pred hhCCCEEEEcCCCh
Confidence 24789999998765
No 113
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=4.4e-06 Score=80.78 Aligned_cols=124 Identities=19% Similarity=0.265 Sum_probs=72.9
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
|+++.+=++|+||||+|||+|++.++..+ +...+.+++...... .+| ..+..+..+-...+
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~sk----~vG------------ese~~vr~lF~~Ar 238 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELVQK----YIG------------EGSRMVRELFVMAR 238 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGSCS----STT------------HHHHHHHHHHHHHH
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhhcc----ccc------------hHHHHHHHHHHHHH
Confidence 56555559999999999999999998887 345566654322110 011 12233333333344
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
...+.++++|.+.++.+...-.+..++. ...+.+.+.|..+-..-...++.||.+|...+.++
T Consensus 239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~---~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LD 301 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRVEGSGGGDS---EVQRTMLELLNQLDGFETSKNIKIIMATNRLDILD 301 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCSCSSSGGGG---HHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSC
T ss_pred HhCCceEeeecchhhccCCCCCCCCCcH---HHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCC
Confidence 5678999999999998543222221222 22344555555554333345677788877666544
No 114
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.38 E-value=1.1e-06 Score=84.74 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=55.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||+..+++.+.+. .|.+++++... ...+...+++.+|...-..+.... ..+...+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~--e~~~~~~~~~v~Q~~~g~~~~~~~---~~l~~~L~ 207 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI--EYVFKHKKSIVNQREVGEDTKSFA---DALRAALR 207 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSC--CSCCCCSSSEEEEEEBTTTBSCSH---HHHHHHTT
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccH--hhhhccCceEEEeeecCCCHHHHH---HHHHHHhh
Confidence 5789999999999999999999999999887 67776666422 111223455555521100111222 23333333
Q ss_pred cCCceEEEEeccc
Q 017792 134 SGSVDVVVVDSVA 146 (366)
Q Consensus 134 ~~~~~lvviDsl~ 146 (366)
.+++++++|.+.
T Consensus 208 -~~pd~illdE~~ 219 (372)
T 2ewv_A 208 -EDPDVIFVGEMR 219 (372)
T ss_dssp -SCCSEEEESCCC
T ss_pred -hCcCEEEECCCC
Confidence 368999999875
No 115
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=5.5e-06 Score=81.10 Aligned_cols=125 Identities=24% Similarity=0.299 Sum_probs=73.5
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
.|+++.+=++|+||||||||+|++.++..+ +...+++++...... .+| ..+..+..+-...
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~sk----~~G------------ese~~ir~~F~~A 270 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIVDK----YIG------------ESARIIREMFAYA 270 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTCCS----SSS------------HHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhccc----cch------------HHHHHHHHHHHHH
Confidence 367666669999999999999999998887 345666664322211 001 1233333333344
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
+...+.++++|.+.++.+...-.+..++. ...+.+...|..+-..-...++.||.+|...+.++
T Consensus 271 ~~~~P~IifiDEiDai~~~R~~~~~~~~~---~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LD 334 (437)
T 4b4t_L 271 KEHEPCIIFMDEVDAIGGRRFSEGTSADR---EIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLD 334 (437)
T ss_dssp HHSCSEEEEEECCCSSSCCCSSSCCSSTT---HHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSC
T ss_pred HhcCCceeeeecccccccccccCCCCcch---HHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhC
Confidence 55678999999999988543322221221 22344445554443322334677887777665544
No 116
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=4.7e-06 Score=81.42 Aligned_cols=124 Identities=19% Similarity=0.264 Sum_probs=73.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
|+++.+=++|+||||||||+|++.++..+ +...+.++....... .+| ..+..+..+-...+
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~~~----~~G------------e~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFVHK----YLG------------EGPRMVRDVFRLAR 262 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTCCS----SCS------------HHHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhhcc----ccc------------hhHHHHHHHHHHHH
Confidence 56666669999999999999999998877 445666654322210 011 11222222222334
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
...+.++++|.+.++.+...-....++. ...|.+.+.|..+-......++.||++|...+.++
T Consensus 263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~---~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD 325 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATKRFDAQTGSDR---EVQRILIELLTQMDGFDQSTNVKVIMATNRADTLD 325 (428)
T ss_dssp HTCSEEEEEECTHHHHCSCSSSCSCCCC---HHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCC
T ss_pred HcCCCeeechhhhhhhccccCCCCCCCh---HHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcC
Confidence 4578999999999887533222211221 23355556666555444456778888877665544
No 117
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=8.2e-06 Score=79.32 Aligned_cols=125 Identities=19% Similarity=0.214 Sum_probs=74.2
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
.|+++.+=++|+||||+|||+|++.++..+. ...+.++....... .+| ..+..+..+-...
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~---~~fi~v~~s~l~sk----~vG------------esek~ir~lF~~A 271 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTS---ATFLRIVGSELIQK----YLG------------DGPRLCRQIFKVA 271 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHT---CEEEEEESGGGCCS----SSS------------HHHHHHHHHHHHH
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhC---CCEEEEEHHHhhhc----cCc------------hHHHHHHHHHHHH
Confidence 4566656699999999999999999998873 45555654322110 011 1233333333344
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
+...+.++++|.+.++.+...-.+..++. ...+.+.+.|..+-..-...++.||.+|...+.++
T Consensus 272 r~~aP~IIfiDEiDai~~~R~~~~~~~~~---~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LD 335 (437)
T 4b4t_I 272 GENAPSIVFIDEIDAIGTKRYDSNSGGER---EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD 335 (437)
T ss_dssp HHTCSEEEEEEEESSSSCCCSCSSCSSCC---HHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCC
T ss_pred HhcCCcEEEEehhhhhcccCCCCCCCccH---HHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcC
Confidence 45678999999999988543333222222 22344555555544332345677888777666654
No 118
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=98.31 E-value=7.1e-08 Score=83.26 Aligned_cols=124 Identities=14% Similarity=0.193 Sum_probs=64.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccc----cCcce-ecCCCCHHHHHHHHHHHHhc
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVK----TENLL-LAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~----~~~~~-~~~~~~~e~~l~~~~~~~~~ 134 (366)
++.|+|++|||||||+.+++.. +.+++|+.+...++.++.+++.-. +.... +-.|....+.+. .. .
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~rI~~h~~~R~~~w~tiE~p~~l~~~l~---~~--~ 71 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTLIT---AD--L 71 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGTSC---TT--S
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHHHHHHHhcCCCCcEEEEcHhhHHHHHH---hh--c
Confidence 4789999999999999998643 567899999877665443333211 11111 112222222211 11 1
Q ss_pred CCceEEEEecccccCCCCccCC-----ccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEec
Q 017792 135 GSVDVVVVDSVAALVPKGELDG-----EMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 193 (366)
Q Consensus 135 ~~~~lvviDsl~~l~~~~~l~~-----~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h 193 (366)
...+.++||+++.+.. +.+.. +............+...+..+...+++...++|+++.
T Consensus 72 ~~~~~VLvDclt~wl~-n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~vlVsN 134 (180)
T 1c9k_A 72 APDDAILLECITTMVT-NLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTN 134 (180)
T ss_dssp CTTCEEEEECHHHHHH-HHHHHC----CTTSCCHHHHHHHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred ccCCeEEEcCHHHHHH-HHHhhcccccccccccchhhHHHHHHHHHHHHHHHHccCCCEEEEEc
Confidence 1236899999988772 32211 0000000001122344566666666667777777654
No 119
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.30 E-value=9.6e-06 Score=77.50 Aligned_cols=114 Identities=14% Similarity=0.178 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCH-H----HHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP-S----LAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~-~----~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
.+.|+||+|+|||||+..++..+... +..++|++....... . +...++.... ....+..+++..+...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP----RRGLSRDEFLALLVEHLR 121 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC----SSCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC----CCCCCHHHHHHHHHHHHh
Confidence 89999999999999999999988766 567889986544432 2 2333433211 122345666666555443
Q ss_pred -cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhh---cCcEEEEEecCC
Q 017792 134 -SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL---SQTILIFINQVR 195 (366)
Q Consensus 134 -~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~---~~~tVI~i~h~~ 195 (366)
.....++++|.+..+.+ .....|.++...+.. .++++|+++|..
T Consensus 122 ~~~~~~vlilDE~~~l~~------------------~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNLAP------------------DILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HTTCCEEEEEETGGGSCH------------------HHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred hcCCeEEEEEECccccch------------------HHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 34578999999987720 011223333222223 588999998865
No 120
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.28 E-value=2.6e-07 Score=82.44 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=26.2
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
-.++|++++|+||||||||||++.+++...+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 5789999999999999999999999998764
No 121
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.27 E-value=1.4e-07 Score=79.78 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=33.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
+++|++++|.||||||||||++.+++.+ +..|. +.+++.
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~-V~~~g~ 68 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGN-VKSPTY 68 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSC-CCCCTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCe-EEECCE
Confidence 6899999999999999999999999998 76676 444443
No 122
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.26 E-value=3.9e-06 Score=78.24 Aligned_cols=108 Identities=18% Similarity=0.127 Sum_probs=72.4
Q ss_pred cccCChHHHHHhhCCCCcCC-------CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH------HHHh
Q 017792 38 VVSTGSFALDIALGTGGLPK-------GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAE 104 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~-------G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~------~~~~ 104 (366)
.+..+...|...++ ++... +.++.++|++|+||||++..++..+.+.++++++++.+..... .+.+
T Consensus 72 ~~~~~~~~l~~~~~-~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~ 150 (297)
T 1j8m_F 72 FIKIVYDELSNLFG-GDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQ 150 (297)
T ss_dssp HHHHHHHHHHHHTT-CSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 46678889999998 55333 8899999999999999999999999988999999998754332 1233
Q ss_pred hcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEeccccc
Q 017792 105 TIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 105 ~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l 148 (366)
+.+++.-. ........+++..+....+....++++||....+
T Consensus 151 ~~~v~v~~--~~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 151 QIGVPVYG--EPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHTCCEEC--CTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSC
T ss_pred cCCeEEEe--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCc
Confidence 44432110 0112345555433333333356899999996543
No 123
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=5.5e-06 Score=81.05 Aligned_cols=125 Identities=21% Similarity=0.226 Sum_probs=70.6
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
-|+++.+=++|+||||||||+|++.++..+ +...+.+++...... .+| ..+..+..+-...
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~~~----~vG------------ese~~ir~lF~~A 270 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLVQM----YIG------------EGAKLVRDAFALA 270 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCSS----CSS------------HHHHHHHHHHHHH
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhhhc----ccc------------hHHHHHHHHHHHH
Confidence 366666669999999999999999998887 345566654321110 011 1223333333333
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
+...+.++++|.+.++.+...-.+..+.. ...+.+...|..+-..-...++.||.+|...+.++
T Consensus 271 ~~~aP~IifiDEiDal~~~R~~~~~~~~~---~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD 334 (434)
T 4b4t_M 271 KEKAPTIIFIDELDAIGTKRFDSEKSGDR---EVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD 334 (434)
T ss_dssp HHHCSEEEEEECTHHHHCCCSSGGGGTTH---HHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCC
T ss_pred HhcCCeEEeecchhhhhhccCCCCCCCch---HHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcC
Confidence 44568999999999987533222211211 12233444444443222334677887777665544
No 124
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.24 E-value=1.5e-05 Score=74.50 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=56.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH-------HHHhhcccccCcceecCCCCHHHH-HHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-------SLAETIGVKTENLLLAQPDCGEQA-LSL 127 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~-------~~~~~ig~~~~~~~~~~~~~~e~~-l~~ 127 (366)
.+|+++.|+|+|||||||++..+++.+.+.+++|++++.+. +.. .+.+.+++.. +..........+ ...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~--~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT-FRAAAIEQLKIWGERVGATV--ISHSEGADPAAVAFDA 178 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEE--ECCSTTCCHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcE--EecCCccCHHHHHHHH
Confidence 46889999999999999999999999998888988888653 332 2334444322 000111122222 222
Q ss_pred HHHHHhcCCceEEEEecccc
Q 017792 128 VDTLIRSGSVDVVVVDSVAA 147 (366)
Q Consensus 128 ~~~~~~~~~~~lvviDsl~~ 147 (366)
+.... ...++++++|....
T Consensus 179 l~~a~-~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 179 VAHAL-ARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHH-HTTCSEEEEEECCC
T ss_pred HHHHH-hcCCCEEEEECCCc
Confidence 32222 34689999997653
No 125
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.23 E-value=3.7e-06 Score=72.37 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
.++|+||||||||||++.+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999884
No 126
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.22 E-value=3.3e-06 Score=79.12 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=57.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEeCCCCC-CHHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~~gg~vl~id~e~~~-~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
..+|.+++|+|+||||||||+..+++.+. +.+|.+.+++..... .....+.+|+. ++..+....++.+++..+..+
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 36889999999999999999999999887 677877666544322 23344567776 655555566888888877665
Q ss_pred Hh
Q 017792 132 IR 133 (366)
Q Consensus 132 ~~ 133 (366)
..
T Consensus 156 ~~ 157 (308)
T 1sq5_A 156 KS 157 (308)
T ss_dssp TT
T ss_pred hC
Confidence 43
No 127
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.21 E-value=1.7e-05 Score=76.16 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=22.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+++| +++|+||||||||||+..++..+
T Consensus 21 ~~~g-~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 21 FQSG-ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 4567 89999999999999998887554
No 128
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.21 E-value=1.6e-06 Score=92.53 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=23.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
+++|++++|.||||||||||+++++..
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999999998543
No 129
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.20 E-value=2e-06 Score=74.55 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+|.++.++|++|+||||++++++..+...+..++++....... .....+.|.......+. ..++++..+ .
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~---~~~~~~~~~----~ 74 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIE---RPEEMRKYI----E 74 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEES---SGGGGGGGC----C
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEEC---CHHHHHHHh----c
Confidence 4789999999999999999999988887777888875432110 01112223222222111 122222211 1
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCc
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 196 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~ 196 (366)
...++++||.++.+.+ + +...|+.+. +.++.|+++.+..+
T Consensus 75 -~~~dvviIDE~Q~~~~---------~---------~~~~l~~l~----~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 75 -EDTRGVFIDEVQFFNP---------S---------LFEVVKDLL----DRGIDVFCAGLDLT 114 (184)
T ss_dssp -TTEEEEEECCGGGSCT---------T---------HHHHHHHHH----HTTCEEEEEEESBC
T ss_pred -CCCCEEEEECcccCCH---------H---------HHHHHHHHH----HCCCCEEEEeeccc
Confidence 3578999999987642 0 112333343 24899999988654
No 130
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.17 E-value=7.7e-06 Score=77.81 Aligned_cols=90 Identities=24% Similarity=0.303 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEeCCCCCCH-H----HHhhcccccCcceecCCCCHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDP-S----LAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~---gg~vl~id~e~~~~~-~----~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
..+..+.|+||+|+|||||+..++..+... +..++|++....... . +...++.... ....+..+.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~ 118 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVP----FTGLSIAELYRR 118 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCC----SSSCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHHHHHH
Confidence 346789999999999999999999988765 557888875432221 1 1222332111 122345666666
Q ss_pred HHHHHhcC-CceEEEEecccccC
Q 017792 128 VDTLIRSG-SVDVVVVDSVAALV 149 (366)
Q Consensus 128 ~~~~~~~~-~~~lvviDsl~~l~ 149 (366)
+...+... ...++++|.+..+.
T Consensus 119 l~~~l~~~~~~~vlilDE~~~l~ 141 (386)
T 2qby_A 119 LVKAVRDYGSQVVIVLDEIDAFV 141 (386)
T ss_dssp HHHHHHTCCSCEEEEEETHHHHH
T ss_pred HHHHHhccCCeEEEEEcChhhhh
Confidence 65555443 37899999998875
No 131
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.17 E-value=1.4e-05 Score=73.37 Aligned_cols=78 Identities=19% Similarity=0.327 Sum_probs=49.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
|++++.-+.|+||||+|||+|++.++..+ +..+++++....... ........+..+.....
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 107 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKK----------------FIGEGASLVKDIFKLAK 107 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCC----------------STTHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHh----------------ccchHHHHHHHHHHHHH
Confidence 46677789999999999999999997765 456666654321110 00111222333333334
Q ss_pred cCCceEEEEecccccCC
Q 017792 134 SGSVDVVVVDSVAALVP 150 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~ 150 (366)
...+.+++||.+..+.+
T Consensus 108 ~~~~~vl~iDEid~l~~ 124 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAA 124 (285)
T ss_dssp HTCSEEEEEETTHHHHB
T ss_pred HcCCeEEEEECHHHhcc
Confidence 45678999999988864
No 132
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.8e-05 Score=77.59 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=71.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
|+++.+=++|+||||+|||+|++.++..+. ...+.++...... ..+| ..+..+..+-...+
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~---~~fi~vs~s~L~s----k~vG------------esek~ir~lF~~Ar 299 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTD---ATFIRVIGSELVQ----KYVG------------EGARMVRELFEMAR 299 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHT---CEEEEEEGGGGCC----CSSS------------HHHHHHHHHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccC---CCeEEEEhHHhhc----ccCC------------HHHHHHHHHHHHHH
Confidence 566666699999999999999999988873 4555555432111 0011 12333333333344
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
...+.++++|.+.++.+...-.+..+.. ...+.+...|..+-..-...++.||.+|...+.++
T Consensus 300 ~~aP~IIfiDEiDai~~~R~~~~~~~~~---~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LD 362 (467)
T 4b4t_H 300 TKKACIIFFDEIDAVGGARFDDGAGGDN---EVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLD 362 (467)
T ss_dssp HTCSEEEEEECCTTTSBCCSSSSCGGGG---HHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBC
T ss_pred hcCCceEeecccccccccccCcCCCccH---HHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCC
Confidence 5678999999999987433222211111 22334445555544322334667777776555544
No 133
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=98.16 E-value=2.1e-05 Score=66.04 Aligned_cols=107 Identities=18% Similarity=0.111 Sum_probs=73.6
Q ss_pred CcccCChHHHHHhhCCCCcCCCCEEEEEc-CCCCcHHHHHHHHHHHHhh--cCCeEEEEeCCCCCCHHHHhhcccccCcc
Q 017792 37 PVVSTGSFALDIALGTGGLPKGRVVEIYG-PEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALDPSLAETIGVKTENL 113 (366)
Q Consensus 37 ~~i~TG~~~LD~~L~~GGi~~G~ii~I~G-~~GsGKTTL~~~l~~~~~~--~gg~vl~id~e~~~~~~~~~~ig~~~~~~ 113 (366)
..+|.|.+.+|..+..||++.|.+++|.. .+|.|=..|+.-++..+.. .++.++||..............|++++++
T Consensus 23 ~~~p~~~~~~~~~~~~~~~~~G~l~Ell~~~~g~gel~LL~P~La~l~~~~~~r~vlwI~Pp~~l~~~~L~~~Gl~~~rl 102 (161)
T 1oft_A 23 NGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERI 102 (161)
T ss_dssp --------------------CCSEEEEEEESCHHHHHHHHHHHHHHHHTCSSSSEEEEESCCTTSCHHHHHHTTCCGGGE
T ss_pred ccCCCCcccccccCCCCCCCCcceEEEccCCCcHHHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCCHHHE
Confidence 46799999999999438999999999985 5777766666666666654 67899999988878888888999999999
Q ss_pred eecCCCCHHHHHHHHHHHHhcCCceEEEEe
Q 017792 114 LLAQPDCGEQALSLVDTLIRSGSVDVVVVD 143 (366)
Q Consensus 114 ~~~~~~~~e~~l~~~~~~~~~~~~~lvviD 143 (366)
.+.++.+..+.++.+++.++.+....|+..
T Consensus 103 l~v~~~~~~daLwa~EqALrsG~~~aVl~W 132 (161)
T 1oft_A 103 LLLQAKDNAAALALSCEALRLGRSHTVVSW 132 (161)
T ss_dssp EEECCSSTTHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEECCChHHHHHHHHHHHhcCCccEEEEC
Confidence 999999999999999999999988887764
No 134
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.13 E-value=2.7e-06 Score=81.57 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=51.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhccccc-Cccee--cCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKT-ENLLL--AQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~-~~~~~--~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+||||||||||++.+++.+.+..|. +.++...... ......+++.+ |+... +...+..+++....
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~-I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l- 249 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL-ITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCL- 249 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE-EEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHT-
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE-EEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHH-
Confidence 5689999999999999999999999988776665 5665432222 11334566665 44332 13345555554322
Q ss_pred HHhcCCceEEEEecc
Q 017792 131 LIRSGSVDVVVVDSV 145 (366)
Q Consensus 131 ~~~~~~~~lvviDsl 145 (366)
...++.++++.+
T Consensus 250 ---~~~pd~~l~~e~ 261 (361)
T 2gza_A 250 ---RMKPTRILLAEL 261 (361)
T ss_dssp ---TSCCSEEEESCC
T ss_pred ---hcCCCEEEEcCc
Confidence 235666666654
No 135
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.13 E-value=2.2e-06 Score=81.38 Aligned_cols=93 Identities=13% Similarity=0.053 Sum_probs=62.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCC---------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPD--------- 119 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~--------- 119 (366)
+++|.+++|+|+||||||||+..+++.+.+.++.+.+++.+.... .....++++.+|+..++...
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 678999999999999999999999999988888876665432110 12345678888765544221
Q ss_pred CHHHHHHHHHHHHhcCCceEEEEeccccc
Q 017792 120 CGEQALSLVDTLIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 120 ~~e~~l~~~~~~~~~~~~~lvviDsl~~l 148 (366)
+.....+.+. .+.....+++++|.....
T Consensus 132 ~tr~~~e~~~-~~~~~~~~~iliDT~Gi~ 159 (337)
T 2qm8_A 132 VAAKTRETML-LCEAAGFDVILVETVGVG 159 (337)
T ss_dssp HHHHHHHHHH-HHHHTTCCEEEEEECSSS
T ss_pred hHHHHHHHHH-HHhcCCCCEEEEECCCCC
Confidence 1122333321 233457899999998743
No 136
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.10 E-value=4e-05 Score=74.93 Aligned_cols=102 Identities=19% Similarity=0.186 Sum_probs=64.3
Q ss_pred hHHHHHhhCCCCc-------CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH------HHHhhcccc
Q 017792 43 SFALDIALGTGGL-------PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVK 109 (366)
Q Consensus 43 ~~~LD~~L~~GGi-------~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~------~~~~~ig~~ 109 (366)
..+|-.+|+ ++- +++.++.++|++|+||||++..++..+.+.+++|++++.+..... .+.+.+|+.
T Consensus 76 ~~eL~~~L~-~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~ 154 (433)
T 3kl4_A 76 YDELSKLFG-GDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQ 154 (433)
T ss_dssp HHHHHHHHC-SSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhcC-ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCc
Confidence 345666676 432 247899999999999999999999999998999999887643221 123334432
Q ss_pred cCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccc
Q 017792 110 TENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAA 147 (366)
Q Consensus 110 ~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~ 147 (366)
.-. .........+............+++++||....
T Consensus 155 ~~~--~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 155 VYG--EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp EEC--CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCC
T ss_pred eee--ccccCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 110 111223334433333333445789999997754
No 137
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.09 E-value=2.2e-06 Score=81.77 Aligned_cols=55 Identities=22% Similarity=0.139 Sum_probs=45.8
Q ss_pred CcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 37 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 37 ~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
..+.||+..||.++. +.+|++++|+|+||||||||++++++...+..+. +.+.++
T Consensus 53 ~~~~tg~~ald~ll~---i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~-i~~~G~ 107 (347)
T 2obl_A 53 QPFILGVRAIDGLLT---CGIGQRIGIFAGSGVGKSTLLGMICNGASADIIV-LALIGE 107 (347)
T ss_dssp SEECCSCHHHHHHSC---EETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEE-EEEESC
T ss_pred eecCCCCEEEEeeee---ecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEE-EEEecc
Confidence 356789999999977 9999999999999999999999999988765553 444444
No 138
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=98.09 E-value=8.2e-06 Score=71.06 Aligned_cols=134 Identities=19% Similarity=0.205 Sum_probs=78.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
.+|.++.++|+.||||||.++.++..+...+.+|+++...... ......++|+......+... +++++.+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~---~~i~~~~~--- 79 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNS---REILKYFE--- 79 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSS---THHHHHCC---
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCH---HHHHHHHh---
Confidence 4688999999999999999999999998888888887532111 11223344543222222222 23333221
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccC
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCG 212 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~g 212 (366)
...++|+||..+.+.+ + ....++.+. ..+++||++....+--+. .|.++
T Consensus 80 --~~~dvViIDEaqfl~~---------~---------~v~~l~~l~----~~~~~Vi~~Gl~~df~~~-~F~~~------ 128 (191)
T 1xx6_A 80 --EDTEVIAIDEVQFFDD---------E---------IVEIVNKIA----ESGRRVICAGLDMDFRGK-PFGPI------ 128 (191)
T ss_dssp --TTCSEEEECSGGGSCT---------H---------HHHHHHHHH----HTTCEEEEEECSBCTTSC-BCTTH------
T ss_pred --ccCCEEEEECCCCCCH---------H---------HHHHHHHHH----hCCCEEEEEecccccccC-cCccH------
Confidence 2479999999887542 0 112344443 349999999876543111 12222
Q ss_pred CceeeeeceEEEEEE
Q 017792 213 GNALKFYASVRLNIK 227 (366)
Q Consensus 213 G~~l~~~ad~~i~l~ 227 (366)
..+..+||.+..|+
T Consensus 129 -~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 129 -PELMAIAEFVDKIQ 142 (191)
T ss_dssp -HHHHHHCSEEEECC
T ss_pred -HHHHHHcccEEeee
Confidence 12455777765554
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.07 E-value=2.6e-05 Score=73.80 Aligned_cols=117 Identities=17% Similarity=0.246 Sum_probs=56.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH-hhcCCeEEEEeCCCCCC-HHHHhhcccccCcceec-CCC-----CHHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAEA-QRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLA-QPD-----CGEQALSLVDTLI 132 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~-~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~-~~~-----~~e~~l~~~~~~~ 132 (366)
+.|+||||+||||+++.+++.+ .+..+. +++++..... ......+++.++...+. ... ......+.+..+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 117 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYR-LKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVA 117 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------------CCEECSSEEEECCC----CCHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCe-EEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHH
Confidence 8999999999999999999955 444444 4555432211 11234455554433221 111 1111222232221
Q ss_pred h-------------cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcc
Q 017792 133 R-------------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 133 ~-------------~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
. ..+++++++|.+..+.+ + .. ..|.++.... ..++++|+++|....
T Consensus 118 ~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~---------~-----~~----~~L~~~le~~-~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 118 QMEQVDFQDSKDGLAHRYKCVIINEANSLTK---------D-----AQ----AALRRTMEKY-SKNIRLIMVCDSMSP 176 (354)
T ss_dssp TTTC------------CCEEEEEECTTSSCH---------H-----HH----HHHHHHHHHS-TTTEEEEEEESCSCS
T ss_pred HhccccccccccccCCCCeEEEEeCccccCH---------H-----HH----HHHHHHHHhh-cCCCEEEEEeCCHHH
Confidence 1 23578999999887431 0 11 2233333332 247899999997654
No 140
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.04 E-value=1.8e-05 Score=74.49 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=37.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
.+|+++.|+|++|+||||++..++..+.+.+++|++++.+.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 57899999999999999999999999998899999988764
No 141
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.03 E-value=4.2e-05 Score=82.46 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
|++++|.||||+|||||++++ +.+.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 899999999999999999999 6654
No 142
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.02 E-value=1.4e-05 Score=83.73 Aligned_cols=115 Identities=21% Similarity=0.176 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEeCCCCCCHHHHhhcccccCcce---e----cCCCCH--HHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALDPSLAETIGVKTENLL---L----AQPDCG--EQALSL 127 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~-~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~---~----~~~~~~--e~~l~~ 127 (366)
|++++|.||||||||||++++++... ++.|..+ .. ....+++..+-+. + ....+. .+.+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v--pa-------~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~l 646 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV--PA-------EEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEV 646 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB--SS-------SEEEECCCSEEEEECCC------CCSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee--eh-------hccceeeHHHhhccCCHHHHHHhcccHHHHHHHHH
Confidence 89999999999999999999998764 4444321 11 0123444432110 0 011111 222333
Q ss_pred HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcc
Q 017792 128 VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 128 ~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
...+....++.++++|.+..-.. .++ + ...+..+...| .+.++++|+++|..+.
T Consensus 647 a~il~~a~~p~LlLLDEpgrGTs--~lD---~----~~~~~~i~~~L-------~~~g~~vl~~TH~~~l 700 (765)
T 1ewq_A 647 ALILKEATENSLVLLDEVGRGTS--SLD---G----VAIATAVAEAL-------HERRAYTLFATHYFEL 700 (765)
T ss_dssp HHHHHHCCTTEEEEEESTTTTSC--HHH---H----HHHHHHHHHHH-------HHHTCEEEEECCCHHH
T ss_pred HHHHHhccCCCEEEEECCCCCCC--CcC---H----HHHHHHHHHHH-------HhCCCEEEEEeCCHHH
Confidence 22222245789999999843321 111 0 01122222222 2259999999997654
No 143
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.02 E-value=4e-05 Score=72.93 Aligned_cols=90 Identities=20% Similarity=0.285 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEeCCCCCCH-----HHHhhcccccCcceecCCCCHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~------gg~vl~id~e~~~~~-----~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
..+..+.|+||+|+|||||+..++..+... +..++|++....... .+...++... -....+..++
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~ 117 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRV----PFTGLSVGEV 117 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCC----CSSCCCHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCC----CCCCCCHHHH
Confidence 345679999999999999999999888654 567888887654442 2334444321 1123345666
Q ss_pred HHHHHHHHhc-CCceEEEEecccccC
Q 017792 125 LSLVDTLIRS-GSVDVVVVDSVAALV 149 (366)
Q Consensus 125 l~~~~~~~~~-~~~~lvviDsl~~l~ 149 (366)
+..+...+.. ....+++||.+..+.
T Consensus 118 ~~~l~~~l~~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 118 YERLVKRLSRLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp HHHHHHHHTTSCSEEEEEEETTTHHH
T ss_pred HHHHHHHHhccCCeEEEEEccHhhhc
Confidence 6665555433 346799999998775
No 144
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.01 E-value=6.9e-06 Score=87.41 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=25.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+++|++++|.||||||||||+++++...
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 5789999999999999999999987654
No 145
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=98.00 E-value=1.1e-05 Score=71.18 Aligned_cols=134 Identities=15% Similarity=0.175 Sum_probs=76.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
.+|.+..++|+-||||||.++..+..+...+.+|+++...... ......++|+......+... +++++.+
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~---~~~~~~~---- 98 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSAS---KDIFKHI---- 98 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSG---GGGGGGC----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCH---HHHHHHH----
Confidence 4688999999999999999999999998888888888643221 12345555654433332211 2222211
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccC
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCG 212 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~g 212 (366)
. ...++|+||..+.+.+ + ....+..+. ..++.||+.....+--+. -|.++
T Consensus 99 ~-~~~dvViIDEaQF~~~---------~---------~V~~l~~l~----~~~~~Vi~~Gl~~DF~~~-~F~~~------ 148 (214)
T 2j9r_A 99 T-EEMDVIAIDEVQFFDG---------D---------IVEVVQVLA----NRGYRVIVAGLDQDFRGL-PFGQV------ 148 (214)
T ss_dssp C-SSCCEEEECCGGGSCT---------T---------HHHHHHHHH----HTTCEEEEEECSBCTTSC-BCTTH------
T ss_pred h-cCCCEEEEECcccCCH---------H---------HHHHHHHHh----hCCCEEEEEecccccccC-ccccH------
Confidence 1 2579999999998642 0 113344443 359999999887654222 13222
Q ss_pred CceeeeeceEEEEEE
Q 017792 213 GNALKFYASVRLNIK 227 (366)
Q Consensus 213 G~~l~~~ad~~i~l~ 227 (366)
..+-.+||.+..|+
T Consensus 149 -~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 149 -PQLMAIAEHVTKLQ 162 (214)
T ss_dssp -HHHHHHCSEEEECC
T ss_pred -HHHHHhcccEEeee
Confidence 12445677776554
No 146
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.99 E-value=3.6e-06 Score=72.48 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=31.2
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
++++|+++.|+|+||||||||++.+++. + +...++++++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~-~~g~i~i~~d 43 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--P-GVPKVHFHSD 43 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--S-SSCEEEECTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--c-CCCeEEEccc
Confidence 4789999999999999999999999875 2 3335777754
No 147
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.99 E-value=2.4e-05 Score=73.65 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
+.+| +++|+|+||||||||+..+...
T Consensus 22 ~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 22 FSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp CCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred cCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 3466 9999999999999999988754
No 148
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.97 E-value=1.5e-05 Score=70.64 Aligned_cols=49 Identities=27% Similarity=0.311 Sum_probs=38.8
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
..|...+. ++ .+..+.|+||+|+|||||+..++..+...+..++|++..
T Consensus 41 ~~l~~~~~-~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 41 GALKSAAS-GD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp HHHHHHHH-TC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred HHHHHHHh-CC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 34445444 22 677899999999999999999999988777788888764
No 149
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.96 E-value=8e-05 Score=67.28 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=46.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+++| +.|+||||+|||||++.++..+ +..+++++....... . .......+-..+. ....
T Consensus 44 ~~~~--vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~~-------------~--~~~~~~~~~~~~~-~a~~ 102 (257)
T 1lv7_A 44 IPKG--VLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM-------------F--VGVGASRVRDMFE-QAKK 102 (257)
T ss_dssp CCCE--EEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTTS-------------C--CCCCHHHHHHHHH-HHHT
T ss_pred CCCe--EEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHHH-------------h--hhhhHHHHHHHHH-HHHH
Confidence 4455 8899999999999999998876 345677765432210 0 0112222222222 2233
Q ss_pred CCceEEEEecccccCC
Q 017792 135 GSVDVVVVDSVAALVP 150 (366)
Q Consensus 135 ~~~~lvviDsl~~l~~ 150 (366)
..+.++++|.+..+.+
T Consensus 103 ~~~~il~iDeid~l~~ 118 (257)
T 1lv7_A 103 AAPCIIFIDEIDAVGR 118 (257)
T ss_dssp TCSEEEEETTHHHHTC
T ss_pred cCCeeehhhhhhhhcc
Confidence 4567999999987764
No 150
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.96 E-value=3.2e-05 Score=81.38 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
++|++++|.||||+|||||++++++...
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 6899999999999999999999998754
No 151
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.96 E-value=4.5e-05 Score=68.03 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=67.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
.|.+..++|+-||||||.++..+..+.-.+.+|+++....... .....++|+......+... +++++.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~---~di~~~~------ 88 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLL---RDVAQEA------ 88 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESSG---GGGHHHH------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCH---HHHHHHh------
Confidence 5899999999999999999999999988888888876432211 2344555654433333221 3333332
Q ss_pred CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcc
Q 017792 135 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 135 ~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
...++|+||.++.+.. +..+...+...|+.||+..+..+-
T Consensus 89 ~~~dvViIDEaQF~~~-----------------------v~el~~~l~~~gi~VI~~GL~~DF 128 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD-----------------------IVEFCEAMANAGKTVIVAALDGTF 128 (234)
T ss_dssp TTCSEEEESSGGGCTT-----------------------HHHHHHHHHHTTCEEEEECCSBCT
T ss_pred ccCCEEEEEchhhhhh-----------------------HHHHHHHHHhCCCEEEEEeccccc
Confidence 4589999999988741 111222223469999999887654
No 152
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.96 E-value=6.2e-05 Score=74.56 Aligned_cols=122 Identities=20% Similarity=0.232 Sum_probs=64.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
-+|+| +.|+||||+|||||++.++..+ +...++++....... .+| .........+.. ..
T Consensus 47 ~~p~g--vLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~~----~~g-----------~~~~~~r~lf~~-A~ 105 (476)
T 2ce7_A 47 RMPKG--ILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVEL----FVG-----------VGAARVRDLFAQ-AK 105 (476)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTTC----CTT-----------HHHHHHHHHHHH-HH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHHH----Hhc-----------ccHHHHHHHHHH-HH
Confidence 45666 8899999999999999998866 445666664322110 001 011112222222 23
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
...+.+++||.+..+.+...-....++. ...+.+.+.|..+-..-...++.||.++|..+.++
T Consensus 106 ~~~p~ILfIDEid~l~~~r~~~~~g~~~---~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 106 AHAPCIVFIDEIDAVGRHRGAGLGGGHD---EREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HTCSEEEEEETGGGTCCC---------C---HHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred hcCCCEEEEechhhhhhhcccccCcCcH---HHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 3568899999999886422110000111 11122333333332211345788999998766543
No 153
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.96 E-value=7e-05 Score=70.44 Aligned_cols=80 Identities=21% Similarity=0.324 Sum_probs=52.3
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
|+..+..-+.|+||||+|||+|++.++..+. +..+++++....... .+ ..+ +..+..+-...
T Consensus 40 ~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~~~----~~-----------g~~-~~~~~~lf~~a 101 (322)
T 1xwi_A 40 GKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSK----WL-----------GES-EKLVKNLFQLA 101 (322)
T ss_dssp TTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSCCS----SC-----------CSC-HHHHHHHHHHH
T ss_pred CCCCCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHHhh----hh-----------hHH-HHHHHHHHHHH
Confidence 5566677899999999999999999988762 345666765432211 00 111 23333333333
Q ss_pred hcCCceEEEEecccccCC
Q 017792 133 RSGSVDVVVVDSVAALVP 150 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~ 150 (366)
....+.+++||.+..+.+
T Consensus 102 ~~~~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 102 RENKPSIIFIDEIDSLCG 119 (322)
T ss_dssp HHTSSEEEEEETTTGGGC
T ss_pred HhcCCcEEEeecHHHhcc
Confidence 445688999999999874
No 154
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.93 E-value=4.4e-06 Score=78.44 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=29.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG 87 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg 87 (366)
+++|++++|+||||||||||++.+++.+.+.+|
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 688999999999999999999999999877543
No 155
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.92 E-value=9.7e-06 Score=77.69 Aligned_cols=106 Identities=15% Similarity=0.200 Sum_probs=68.0
Q ss_pred CcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC--CeEEEEeCCCCCC--HHHHhhcccccCc
Q 017792 37 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG--GYCVFIDAEHALD--PSLAETIGVKTEN 112 (366)
Q Consensus 37 ~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g--g~vl~id~e~~~~--~~~~~~ig~~~~~ 112 (366)
+.+.||+..+|..+. +.+|+.++|+|++|+|||||+.+++..+...+ -.|+|+--.+..+ ..+.+.+- -
T Consensus 156 ~~~~tGiraID~~~p---i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~----~ 228 (422)
T 3ice_A 156 STEDLTARVLDLASP---IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK----G 228 (422)
T ss_dssp CTTHHHHHHHHHHSC---CBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCS----S
T ss_pred Ccccccceeeeeeee---ecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhC----e
Confidence 578899999999998 88999999999999999999999988876542 3466653222111 12222221 1
Q ss_pred ceec-CC-CCH-------HHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 113 LLLA-QP-DCG-------EQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 113 ~~~~-~~-~~~-------e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
..+. .. ..+ +-.+...+.+...+.--++++|+++.+.
T Consensus 229 ~vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A 274 (422)
T 3ice_A 229 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLA 274 (422)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHH
Confidence 1111 11 111 2223344455556677788899997553
No 156
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.91 E-value=5e-05 Score=70.68 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCH------HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~~~------~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
.+|++++|+|+||+||||++..++..+.+ .|.+|.+++.+..... .+++..|+.. ....+..++...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~-----~~~~~~~~l~~al 177 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPL-----EVCYTKEEFQQAK 177 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCC-----CBCSSHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCe-----EecCCHHHHHHHH
Confidence 36899999999999999999999999986 5658899887643211 1223333321 1112344443333
Q ss_pred HHHHhcCCceEEEEec
Q 017792 129 DTLIRSGSVDVVVVDS 144 (366)
Q Consensus 129 ~~~~~~~~~~lvviDs 144 (366)
..+ .+++++++|.
T Consensus 178 ~~~---~~~dlvIiDT 190 (296)
T 2px0_A 178 ELF---SEYDHVFVDT 190 (296)
T ss_dssp HHG---GGSSEEEEEC
T ss_pred HHh---cCCCEEEEeC
Confidence 322 4689999993
No 157
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.90 E-value=5.7e-06 Score=72.63 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=25.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
+++|++++|+||||||||||++.+++.+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999999999874
No 158
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.90 E-value=0.00037 Score=68.20 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH------HHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~------~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
++.++.++|++|+||||++..++..+...|.+|++++.+..... .+.+..++..-.. .......+++.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~--~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGN--PQEKDAIKLAKEGVD 176 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECC--TTCCCHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEec--CCCCCHHHHHHHHHH
Confidence 36799999999999999999999999888889999987643332 2344444432111 112234444333333
Q ss_pred HHhcCCceEEEEeccccc
Q 017792 131 LIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 131 ~~~~~~~~lvviDsl~~l 148 (366)
......+++++||....+
T Consensus 177 ~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHTTCSEEEEECCCCS
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 334456899999987544
No 159
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.88 E-value=7.1e-06 Score=72.82 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=27.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 91 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~ 91 (366)
+++|++++|+||||||||||++.+++.+ + |.+.+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~ 53 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF 53 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE
Confidence 6799999999999999999999999977 4 55433
No 160
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.88 E-value=7.7e-06 Score=76.20 Aligned_cols=122 Identities=20% Similarity=0.265 Sum_probs=65.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
|++++..+.|+||||+|||+|++.++..+ +...++++... .....+|.. ......++..+ .
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~----l~~~~~g~~--------~~~~~~~f~~a----~ 105 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPE----LLTMWFGES--------EANVREIFDKA----R 105 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHH----HHHHHHTTC--------TTHHHHHHHHH----H
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHH----HHhhhcCch--------HHHHHHHHHHH----H
Confidence 68889999999999999999999998876 34556655311 111112211 11122333322 2
Q ss_pred cCCceEEEEecccccCCCCccC-CccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccc
Q 017792 134 SGSVDVVVVDSVAALVPKGELD-GEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 198 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~-~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~ 198 (366)
...+.++++|.+..+.+...-. ...+... .+.+.+.|..+-......++.||.+++....+
T Consensus 106 ~~~p~il~iDEid~l~~~~~~~~~~~~~~~----~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 106 QAAPCVLFFDELDSIAKARGGNIGDGGGAA----DRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HTCSEEEEECSTTHHHHHHTTTTCCSSCSC----CHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hcCCeEEEEEChHHHhhccCCCcCCcchHH----HHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 3457899999998876321110 0001110 01222333333221123577888888766543
No 161
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.87 E-value=6e-05 Score=69.28 Aligned_cols=76 Identities=30% Similarity=0.369 Sum_probs=46.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
-+++| ++|+||||||||||++.+++.+.. ..+++++........ + ..+..+..+-....
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~~---~~i~i~g~~l~~~~~----~------------~~~~~i~~vf~~a~ 100 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANESGL---NFISVKGPELLNMYV----G------------ESERAVRQVFQRAK 100 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHTTC---EEEEEETTTTCSSTT----H------------HHHHHHHHHHHHHH
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHcCC---CEEEEEcHHHHhhhh----h------------HHHHHHHHHHHHHH
Confidence 35566 999999999999999999887643 457777654322100 0 01111222222222
Q ss_pred cCCceEEEEecccccCC
Q 017792 134 SGSVDVVVVDSVAALVP 150 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~ 150 (366)
...+.++++|.+..+.+
T Consensus 101 ~~~p~i~~~Deid~~~~ 117 (274)
T 2x8a_A 101 NSAPCVIFFDEVDALCP 117 (274)
T ss_dssp HTCSEEEEEETCTTTCC
T ss_pred hcCCCeEeeehhhhhhc
Confidence 34567899999987653
No 162
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.87 E-value=9.4e-05 Score=66.65 Aligned_cols=78 Identities=21% Similarity=0.185 Sum_probs=44.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
|++...-+.|+||||+|||+++..++..+ +...++++....... +... ....+..+-....
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~---------------~~~~-~~~~~~~~~~~a~ 95 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEV---------------IGGL-GAARVRSLFKEAR 95 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSS---------------STTH-HHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhh---------------ccCh-hHHHHHHHHHHHH
Confidence 44555668999999999999999998865 455677765432210 0000 1112222222222
Q ss_pred cCCceEEEEecccccCC
Q 017792 134 SGSVDVVVVDSVAALVP 150 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~ 150 (366)
.....+++||.+..+.+
T Consensus 96 ~~~~~vl~iDeid~l~~ 112 (262)
T 2qz4_A 96 ARAPCIVYIDEIDAVGK 112 (262)
T ss_dssp HTCSEEEEEECC-----
T ss_pred hcCCeEEEEeCcchhhc
Confidence 34578999999998863
No 163
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.87 E-value=3.6e-06 Score=86.16 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=42.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCC------CCCHHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEH------ALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~------~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
++|+||||||||||+..+++...+ ..|. +++++.. .....+...+|+.+|+..+....++.+.+.....
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~-vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~ 123 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGI-VTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN 123 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCe-EEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH
Confidence 999999999999999999998766 3554 3333322 1112455678999988777766667766665443
No 164
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.87 E-value=2.5e-06 Score=78.44 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcc
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL 113 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~ 113 (366)
.++|+||||||||||++.+++...+..|. ++++++........+.+++.+|+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~-i~~~g~~i~~~~~~~~i~~v~q~~ 56 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKAS-SWNREEKIPKTVEIKAIGHVIEEG 56 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCc-cccCCcccCcceeeeeeEEEeecC
Confidence 47899999999999999999999888776 455554433223345567776643
No 165
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.86 E-value=1.2e-05 Score=70.69 Aligned_cols=32 Identities=34% Similarity=0.485 Sum_probs=28.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQG 86 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g 86 (366)
.++|++++|+||||||||||++.+++.+.+.|
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g 50 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQG 50 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 46899999999999999999999999988653
No 166
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.86 E-value=1.3e-05 Score=76.82 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=30.1
Q ss_pred CCcCC--CCEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 017792 53 GGLPK--GRVVEIYGPEASGKTTLALHVIAEAQRQG 86 (366)
Q Consensus 53 GGi~~--G~ii~I~G~~GsGKTTL~~~l~~~~~~~g 86 (366)
--+++ |+.++|+|+||||||||++.+++.+.+..
T Consensus 163 ~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 163 KEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp TTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 34566 99999999999999999999999988766
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.86 E-value=1.3e-05 Score=69.79 Aligned_cols=52 Identities=31% Similarity=0.381 Sum_probs=37.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCc
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 112 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~ 112 (366)
++|++++|+|+|||||||+++.++..+ | .++++++..... ......|+.+++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~----g-~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET----G-LEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH----C-CEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh----C-CeEEcccccccHHHHHHHhcCCCCCC
Confidence 579999999999999999999998876 3 367776654432 222345666654
No 168
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.85 E-value=5.7e-05 Score=70.25 Aligned_cols=90 Identities=23% Similarity=0.294 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHH------HHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS------LAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~------~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+|+++.|+|++|+||||++..+++.+.+.++++++++.+...... +.+..++.. +.........++...+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~--~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV--LEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE--EECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEE--EEcCCCCCHHHHHHHHHH
Confidence 688999999999999999999999999888999988875432211 122222211 000112334444322222
Q ss_pred HHhcCCceEEEEeccccc
Q 017792 131 LIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 131 ~~~~~~~~lvviDsl~~l 148 (366)
......++++++|....+
T Consensus 175 ~~~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 175 KARLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHHHTCCEEEEECCCCS
T ss_pred HHHhCCCCEEEEeCCCCc
Confidence 222236899999987544
No 169
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.85 E-value=0.0002 Score=65.99 Aligned_cols=76 Identities=22% Similarity=0.318 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 135 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~ 135 (366)
.++..+.|+||||+|||||++.++..+ +...++++....... .....+.....+.......
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~----------------~~~~~~~~~~~~~~~~~~~ 112 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSK----------------YVGDGEKLVRALFAVARHM 112 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSS----------------SCSCHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhc----------------ccchHHHHHHHHHHHHHHc
Confidence 346789999999999999999998765 445566665332110 0112333333333334445
Q ss_pred CceEEEEecccccCC
Q 017792 136 SVDVVVVDSVAALVP 150 (366)
Q Consensus 136 ~~~lvviDsl~~l~~ 150 (366)
.+.++++|.+..+.+
T Consensus 113 ~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 113 QPSIIFIDEVDSLLS 127 (297)
T ss_dssp CSEEEEEETGGGTSB
T ss_pred CCcEEEeccHHHhcc
Confidence 788999999998874
No 170
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.83 E-value=1.4e-05 Score=74.60 Aligned_cols=42 Identities=33% Similarity=0.535 Sum_probs=34.4
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV 90 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl 90 (366)
+.|+.+.- .+++|++++|+||||||||||++.+++.+ .|.++
T Consensus 114 ~vL~~vsl--~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~ 155 (305)
T 2v9p_A 114 NALKLWLK--GIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL 155 (305)
T ss_dssp HHHHHHHH--TCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE
T ss_pred hhhccceE--EecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE
Confidence 34555443 59999999999999999999999999988 56654
No 171
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.82 E-value=5.1e-05 Score=65.95 Aligned_cols=110 Identities=17% Similarity=0.152 Sum_probs=70.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
..|++..|+|+.||||||.+++.+.++...+.+|+|+..+-... ..+..++|...+-..+. ..++++.. .
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~---~~~d~~~~----~- 89 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPAC---LLRDVAQE----A- 89 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEES---SGGGGHHH----H-
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecC---CHHHHHHh----c-
Confidence 35899999999999999999999999988888999997652211 12333344332222221 22333332 1
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcc
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
...+++.||.++.+ +. ...++..|. +.|+.||+.....+-
T Consensus 90 -~~~DvIlIDEaQFf-k~------------------~ve~~~~L~----~~gk~VI~~GL~~DF 129 (195)
T 1w4r_A 90 -LGVAVIGIDEGQFF-PD------------------IVEFCEAMA----NAGKTVIVAALDGTF 129 (195)
T ss_dssp -HTCSEEEESSGGGC-TT------------------HHHHHHHHH----HTTCEEEEEEESBCT
T ss_pred -cCCCEEEEEchhhh-HH------------------HHHHHHHHH----HCCCeEEEEeccccc
Confidence 24799999999988 41 112333333 469999999887764
No 172
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.82 E-value=5.4e-05 Score=70.93 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
..+..+.|+||+|+|||||+..++..+...+..++|++..
T Consensus 35 ~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 35 SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 3456799999999999999999999887777788898753
No 173
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.81 E-value=2.7e-06 Score=73.98 Aligned_cols=52 Identities=27% Similarity=0.291 Sum_probs=36.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCc
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTEN 112 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~ 112 (366)
|++++|+||||||||||+..+++.+. ..| +.+++..... ..+.+++|+.++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G--i~~~g~~~~~~~~~~~~ig~~~~~ 53 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG--VPVDGFYTEEVRQGGRRIGFDVVT 53 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT--CCCEEEECCEEETTSSEEEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC--EEEcCEecchhHhhhceEEEEEEe
Confidence 68899999999999999999999988 655 3444322211 1245567776664
No 174
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.79 E-value=2.3e-05 Score=68.29 Aligned_cols=40 Identities=33% Similarity=0.504 Sum_probs=33.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
++|.++.|.|+|||||||+++.++..+...|..++|++++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 6899999999999999999999999887444444577754
No 175
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.78 E-value=3.1e-05 Score=67.61 Aligned_cols=41 Identities=29% Similarity=0.267 Sum_probs=35.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
.++|.+++|.|++|||||||+..++..+.+.++.+++++.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 46789999999999999999999999988778887777543
No 176
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.77 E-value=4.8e-05 Score=70.55 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=48.4
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
.|+++...+.|+||||+|||+|+..++..+ +..+++++..... ...+|.. +....+.+..+..+.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~----~~~~g~~--------~~~i~~~f~~a~~~~ 95 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELE----SGNAGEP--------AKLIRQRYREAAEII 95 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHH----CC---HH--------HHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhh----hccCchh--------HHHHHHHHHHHHHHH
Confidence 355666679999999999999999998877 4556666632110 0001110 001123333333344
Q ss_pred hcCCceEEEEecccccCC
Q 017792 133 RSGSVDVVVVDSVAALVP 150 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~ 150 (366)
+...+.++++|.+..+.+
T Consensus 96 ~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 96 RKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp TTSSCCCEEEECCC----
T ss_pred hcCCCeEEEEechhhhcC
Confidence 566788999999988774
No 177
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.76 E-value=0.00013 Score=67.44 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=54.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH-HHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-SLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGS 136 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~-~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~ 136 (366)
...+.|+||||+||||+++.++..+...++.+++++....... ...+.+|..++....... ..+ ...+....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~---~~~----~~~~~~~~ 119 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG---GQL----TEAVRRRP 119 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTC---CHH----HHHHHHCS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcccccccc---chH----HHHHHhCC
Confidence 3479999999999999999999988777777888876544332 334445554433221111 111 12222334
Q ss_pred ceEEEEecccccC
Q 017792 137 VDVVVVDSVAALV 149 (366)
Q Consensus 137 ~~lvviDsl~~l~ 149 (366)
..++++|.+..+.
T Consensus 120 ~~vl~lDEi~~l~ 132 (311)
T 4fcw_A 120 YSVILFDAIEKAH 132 (311)
T ss_dssp SEEEEEETGGGSC
T ss_pred CeEEEEeChhhcC
Confidence 5799999997764
No 178
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.76 E-value=0.00011 Score=71.76 Aligned_cols=89 Identities=25% Similarity=0.329 Sum_probs=57.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHH-------HHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS-------LAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~-------~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
++.++.++|++|+||||++..++..+.+.+++|++++.+. ..+. +.+..+++. +......+..+++....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~-~r~aa~~qL~~~~~~~gv~v--~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT-QRPAAREQLRLLGEKVGVPV--LEVMDGESPESIRRRVE 173 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS-SCHHHHHHHHHHHHHHTCCE--EECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc-cCchhHHHHHHhcccCCccE--EecCCCCCHHHHHHHHH
Confidence 5789999999999999999999999998889999988753 3321 222333321 00011223444433222
Q ss_pred HHHhcCCceEEEEeccccc
Q 017792 130 TLIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 130 ~~~~~~~~~lvviDsl~~l 148 (366)
........++++||....+
T Consensus 174 ~~~~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 174 EKARLEARDLILVDTAGRL 192 (425)
T ss_dssp HHHHHTTCSEEEEECCCCS
T ss_pred HHHHHCCCCEEEEcCCCcc
Confidence 2232356899999987544
No 179
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.76 E-value=1.6e-05 Score=69.07 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=25.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+++|++++|+||||||||||++.+++.+
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4579999999999999999999998875
No 180
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.74 E-value=0.00012 Score=76.71 Aligned_cols=123 Identities=21% Similarity=0.336 Sum_probs=71.0
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
-|+.+-.=++|+||||+|||+|++.++..+ +...+++++.+ +. +. ..-..+..+..+-...
T Consensus 233 ~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~~~-----l~---sk--------~~gese~~lr~lF~~A 293 (806)
T 3cf2_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE-----IM---SK--------LAGESESNLRKAFEEA 293 (806)
T ss_dssp CCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEHHH-----HH---SS--------CTTHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEhHH-----hh---cc--------cchHHHHHHHHHHHHH
Confidence 466665669999999999999999998765 45566665321 10 00 0011233333333334
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccc
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLST 200 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~ 200 (366)
+...+.+++||.+.++.+..+-.. ++. ..+.+.+.|..+-......++.||.++...+.++.
T Consensus 294 ~~~~PsIIfIDEiDal~~~r~~~~--~~~----~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ 355 (806)
T 3cf2_A 294 EKNAPAIIFIDELDAIAPKREKTH--GEV----ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp TTSCSEEEEEESGGGTCCTTTTCC--CTT----HHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCT
T ss_pred HHcCCeEEEEehhcccccccCCCC--ChH----HHHHHHHHHHHHhcccccCCEEEEEecCChhhcCH
Confidence 556789999999999986432221 222 12333333333333223457778888776655543
No 181
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.74 E-value=3.1e-05 Score=66.03 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
++|.++.|.|++||||||++..++..+.+.|-.+++++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 679999999999999999999999888665556677764
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.73 E-value=0.00014 Score=68.19 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=50.3
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
++..+..-+.|+||||+|||+|++.++..+ +..+++++.... ....+| ..+..+..+-...
T Consensus 46 ~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l----~~~~~g------------~~~~~~~~~f~~a 106 (322)
T 3eie_A 46 GNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL----VSKWMG------------ESEKLVKQLFAMA 106 (322)
T ss_dssp TTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHH----HTTTGG------------GHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHH----hhcccc------------hHHHHHHHHHHHH
Confidence 445556679999999999999999998775 455666653210 000011 1233333333334
Q ss_pred hcCCceEEEEecccccCC
Q 017792 133 RSGSVDVVVVDSVAALVP 150 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~ 150 (366)
....+.+++||.+..+.+
T Consensus 107 ~~~~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 107 RENKPSIIFIDQVDALTG 124 (322)
T ss_dssp HHTSSEEEEEECGGGGSC
T ss_pred HhcCCeEEEechhhhhhc
Confidence 455778999999999874
No 183
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.69 E-value=2.9e-05 Score=67.91 Aligned_cols=29 Identities=45% Similarity=0.464 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
++|.+++|.||||||||||++.+++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57899999999999999999999988753
No 184
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.68 E-value=0.00038 Score=58.71 Aligned_cols=92 Identities=13% Similarity=0.141 Sum_probs=51.5
Q ss_pred hHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-------cCCeEEEEeCCCCCCHHHHhhcccccCccee
Q 017792 43 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-------QGGYCVFIDAEHALDPSLAETIGVKTENLLL 115 (366)
Q Consensus 43 ~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-------~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~ 115 (366)
+..|-..+. . ..+..+.|+||+|+|||+|+..++..+.. .+..+++++... ......+
T Consensus 31 ~~~l~~~l~-~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~------- 95 (195)
T 1jbk_A 31 IRRTIQVLQ-R--RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA-----LVAGAKY------- 95 (195)
T ss_dssp HHHHHHHHT-S--SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH-----HHTTTCS-------
T ss_pred HHHHHHHHh-c--CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH-----HhccCCc-------
Confidence 344444454 2 33456899999999999999999988764 244555654311 0000000
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEEecccccCC
Q 017792 116 AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVP 150 (366)
Q Consensus 116 ~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~ 150 (366)
.......+...+..+.......+++||.+..+.+
T Consensus 96 -~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~ 129 (195)
T 1jbk_A 96 -RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG 129 (195)
T ss_dssp -HHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT
T ss_pred -cccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhc
Confidence 0000111122222233345577999999998863
No 185
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.68 E-value=4.7e-05 Score=65.30 Aligned_cols=47 Identities=34% Similarity=0.350 Sum_probs=36.3
Q ss_pred HHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 45 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 45 ~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.||+-.. ..+|.++.|.|++||||||++..++..+...++.+.++++
T Consensus 3 ~~~~~~~---~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 3 ALTTYKC---IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp -----CC---CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccccccc---cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 3555444 3578999999999999999999999998888888888874
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.67 E-value=0.00036 Score=68.47 Aligned_cols=106 Identities=19% Similarity=0.178 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 135 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~--gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~ 135 (366)
+..+.|+||+|+|||||+..++..+... +..++|++.+... ..+...+. ......+. ... ..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~-~~~~~~~~----------~~~~~~~~----~~~-~~ 193 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL-NDLVDSMK----------EGKLNEFR----EKY-RK 193 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH-HHHHHHHH----------TTCHHHHH----HHH-TT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-HHHHHHHH----------cccHHHHH----HHh-cC
Confidence 5679999999999999999999888665 6678888754311 11111110 00111111 111 12
Q ss_pred CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCC
Q 017792 136 SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVR 195 (366)
Q Consensus 136 ~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~ 195 (366)
..++++||.+..+.... . ... .|..+...+.+.++.||+++|..
T Consensus 194 ~~~vL~IDEi~~l~~~~-------~-----~q~----~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKT-------G-----VQT----ELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCH-------H-----HHH----HHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCCh-------H-----HHH----HHHHHHHHHHHCCCeEEEEECCC
Confidence 57899999998886210 0 111 23333333345688999998853
No 187
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.67 E-value=2.7e-05 Score=66.75 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=25.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
|-.+|++++|+||||||||||++.++....
T Consensus 1 ~~~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 1 GSHMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 446789999999999999999999988764
No 188
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.66 E-value=0.00077 Score=59.91 Aligned_cols=44 Identities=25% Similarity=0.178 Sum_probs=36.4
Q ss_pred CCCE-EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH
Q 017792 57 KGRV-VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP 100 (366)
Q Consensus 57 ~G~i-i~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~ 100 (366)
+|++ +.+.|++|+||||++..++..+...|..|++++.+..-..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~ 48 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRA 48 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCCh
Confidence 5665 7778999999999999999999888888888887754443
No 189
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.66 E-value=2.3e-05 Score=68.43 Aligned_cols=29 Identities=31% Similarity=0.488 Sum_probs=23.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
+++|++++|+||||||||||++.+++.+.
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35789999999999999999999998774
No 190
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.65 E-value=2.4e-05 Score=67.37 Aligned_cols=36 Identities=33% Similarity=0.462 Sum_probs=28.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
|++++|+||||||||||++.+++.+....+.++...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~ 36 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSST 36 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeecc
Confidence 578999999999999999999998865444334333
No 191
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.63 E-value=0.00027 Score=67.28 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=48.4
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
++..+..-+.|+||+|+|||+|++.++..+ +..+++++.. .+... . ... .+..+..+....
T Consensus 79 ~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~-----~l~~~--------~--~g~-~~~~~~~~f~~a 139 (355)
T 2qp9_X 79 GNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSS-----DLVSK--------W--MGE-SEKLVKQLFAMA 139 (355)
T ss_dssp SSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHH-----HHHSC--------C------CHHHHHHHHHHH
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHH-----HHhhh--------h--cch-HHHHHHHHHHHH
Confidence 344555568899999999999999998876 3455665432 11100 0 011 122233232333
Q ss_pred hcCCceEEEEecccccCC
Q 017792 133 RSGSVDVVVVDSVAALVP 150 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~ 150 (366)
....+.+++||.+..+.+
T Consensus 140 ~~~~~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 140 RENKPSIIFIDQVDALTG 157 (355)
T ss_dssp HHTSSEEEEEECGGGGTC
T ss_pred HHcCCeEEEEechHhhcc
Confidence 345688999999998874
No 192
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.61 E-value=7.5e-05 Score=73.45 Aligned_cols=55 Identities=29% Similarity=0.494 Sum_probs=46.1
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEe
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFID 93 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id 93 (366)
.+.+.||+..+|.+.. +-+|+.+.|+|++|+|||||+..++...... +.-++|..
T Consensus 132 ~e~l~TGir~ID~L~p---i~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~ 187 (473)
T 1sky_E 132 VEILETGIKVVDLLAP---YIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAG 187 (473)
T ss_dssp CCEECCSCHHHHHHSC---EETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred CccccccchHHHHHhh---hccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEee
Confidence 5679999999999987 7789999999999999999999999887653 44455543
No 193
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.60 E-value=0.00016 Score=76.29 Aligned_cols=120 Identities=22% Similarity=0.365 Sum_probs=67.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
|+++++.++|+||||||||||++.+++.+ +...+++++.... +. .....+..+..+-....
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~i~v~~~~l~--------~~--------~~g~~~~~l~~vf~~a~ 294 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM--------SK--------LAGESESNLRKAFEEAE 294 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEEEEEEHHHHS--------SS--------STTHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcEEEEEchHhh--------hh--------hhhhHHHHHHHHHHHHH
Confidence 68999999999999999999999998765 3445666542111 00 00011222222222222
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCCcccc
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL-SLSQTILIFINQVRAKLS 199 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l-~~~~~tVI~i~h~~~~~~ 199 (366)
...+.++++|.+..+.+...... ++ .. +.+...|..+...+ ...++.+|.+++....++
T Consensus 295 ~~~p~il~iDEid~l~~~~~~~~--~~----~~-~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 295 KNAPAIIFIDELDAIAPKREKTH--GE----VE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp HHCSEEEEEESGGGTSCTTSCCC--SH----HH-HHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC
T ss_pred hcCCcEEEeccHHHhhhcccccc--ch----HH-HHHHHHHHHHhhhhcccccEEEecccCCchhcC
Confidence 33578999999998875332211 11 11 22223333333322 235678888888765544
No 194
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.60 E-value=0.00021 Score=64.40 Aligned_cols=36 Identities=39% Similarity=0.506 Sum_probs=28.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
-+++| +.|+||||+|||||++.+++.+. ...+++++
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~ 82 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASG 82 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeH
Confidence 35667 89999999999999999988764 33456653
No 195
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.58 E-value=5.1e-05 Score=73.98 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.+|.+++|+||||||||||+..+++.+.+..+.++++..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 578899999999999999999999998877787776653
No 196
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.57 E-value=4.2e-05 Score=68.86 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=38.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL 125 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l 125 (366)
-+++|.+++|.||||||||||++.+++.+ |. ++++ ...+.+++.++.. ++...+..+++
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~-~~~~-------~~~~~i~~v~~d~-~~~~l~~~~~~ 79 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELL----GQ-NEVE-------QRQRKVVILSQDR-FYKVLTAEQKA 79 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHH----TG-GGSC-------GGGCSEEEEEGGG-GBCCCCHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHh----ch-hccc-------ccCCceEEEeCCc-CccccCHhHhh
Confidence 36789999999999999999999998876 21 1122 2344566666553 44455555543
No 197
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.55 E-value=4.7e-05 Score=66.11 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=26.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
+++|.+++|+|+|||||||++..++..+.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 578999999999999999999999887633
No 198
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.52 E-value=2.8e-05 Score=69.25 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=19.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHH-HHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVI-AEAQ 83 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~-~~~~ 83 (366)
+++|++++|+||||||||||++.++ +.+.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5789999999999999999999998 7753
No 199
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.51 E-value=3.1e-05 Score=67.89 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=49.9
Q ss_pred HHHHHH-HHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 8 LQQALD-QITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 8 ~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+..|+. +.++.++.+.+-..-..+.-+.++.++. +..|-..+. |+|+...+.|+||||+||||+|..++..+
T Consensus 10 ~~~~i~~~~~~~~~~~~w~~I~~~l~yq~~~~~~f-~~~l~~~~~--~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 10 MSQWIRFRCSKIDEGGDWRPIVQFLRYQQIEFITF-LGALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHTSCSCCCSHHHHHHHHHTTCCHHHH-HHHHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHcCcCHHHH-HHHHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 345555 3666667665422211111234566666 777888887 69988889999999999999999998876
No 200
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.51 E-value=0.0008 Score=66.06 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=49.8
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
|+..+..-+.|+||||+|||+|++.++..+. +..+++++....... .+|. .......++..+.
T Consensus 162 ~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l~~~----~~g~--------~~~~~~~~f~~a~--- 224 (444)
T 2zan_A 162 GKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSK----WLGE--------SEKLVKNLFQLAR--- 224 (444)
T ss_dssp GGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC---------------------CCCTHHHHHHHHH---
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHHHhh----hcch--------HHHHHHHHHHHHH---
Confidence 4455667899999999999999999988762 445666665432211 1111 1122344444332
Q ss_pred hcCCceEEEEecccccCC
Q 017792 133 RSGSVDVVVVDSVAALVP 150 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~ 150 (366)
...+.+++||.+..+.+
T Consensus 225 -~~~~~vl~iDEid~l~~ 241 (444)
T 2zan_A 225 -ENKPSIIFIDEIDSLCG 241 (444)
T ss_dssp -HSCSEEEEESCTTTTCC
T ss_pred -HcCCeEEEEechHhhcc
Confidence 34678999999998874
No 201
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.49 E-value=0.00019 Score=70.30 Aligned_cols=51 Identities=31% Similarity=0.322 Sum_probs=41.5
Q ss_pred HHHHhhCCCC---c--CCC--CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 45 ALDIALGTGG---L--PKG--RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 45 ~LD~~L~~GG---i--~~G--~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
.|..+++ +. + .++ .++.|+|++|+||||++..++..+...|.+|++++.+.
T Consensus 80 ~l~~ll~-~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 80 ELVKLLG-EEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp HHHHHHC-CSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred HHHHHhC-CCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 4666777 54 4 223 59999999999999999999999988888999998764
No 202
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.48 E-value=8.4e-05 Score=63.81 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=26.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
|++++|+||||||||||++.++. +.++. ++++++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~-~~i~~d 35 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNS-AYIEGD 35 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSE-EEEEHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCe-EEEccc
Confidence 67999999999999999999975 34453 667653
No 203
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.47 E-value=7.7e-05 Score=63.15 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 98 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~ 98 (366)
.+|.++.|+|+|||||||++..++..+ | .++++++...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g-~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----H-AAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----T-CEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----C-cEEEeCcccc
Confidence 468899999999999999999998765 3 3677765543
No 204
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.46 E-value=0.0003 Score=59.27 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
.+..+.|+||+|+|||+|+..++..+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3556899999999999999999988755
No 205
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.46 E-value=6.2e-05 Score=74.56 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=33.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
+++ ++++|+||||||||||++.+++.+.+..|. +++++..
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~ 66 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTL-LNFRNTT 66 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTT-CCCCCTT
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCE-EEECCEE
Confidence 678 999999999999999999999999888777 4555443
No 206
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.44 E-value=0.0012 Score=60.80 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC----CeEEEEeC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQG----GYCVFIDA 94 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g----g~vl~id~ 94 (366)
+++.-+.|+||||+|||++++.++..+...+ +.+++++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 4455799999999999999999998886543 35677764
No 207
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.44 E-value=0.00039 Score=63.61 Aligned_cols=35 Identities=40% Similarity=0.530 Sum_probs=27.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+++| +.|+||||||||||++.++..+. ...++++.
T Consensus 72 ~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~ 106 (278)
T 1iy2_A 72 IPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASG 106 (278)
T ss_dssp CCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEH
T ss_pred CCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecH
Confidence 5667 89999999999999999988764 33456553
No 208
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.44 E-value=9.7e-05 Score=63.04 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=28.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcC--CeEEEEeCCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQG--GYCVFIDAEH 96 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~g--g~vl~id~e~ 96 (366)
+++.|+|++|||||||+..+++.+.+.+ ...+.+++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 5799999999999999999999998873 2346666543
No 209
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.43 E-value=0.00085 Score=67.15 Aligned_cols=86 Identities=22% Similarity=0.215 Sum_probs=50.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHH-hhcccccCcceecCCCCHHHHHHHHH-HHHh
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLA-ETIGVKTENLLLAQPDCGEQALSLVD-TLIR 133 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~-~~ig~~~~~~~~~~~~~~e~~l~~~~-~~~~ 133 (366)
+....+.|+||+|+||||+++.++..+ +..+++++.......... ..+.-..+...+. .++.... ....
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~ 145 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRSKTLLNAGVKNALDNMSVV------GYFKHNEEAQNL 145 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCCHHHHHHTGGGGTTBCCST------TTTTC----CCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcchHHHHHHHHHHHhccccHH------HHHhhhhhhhhc
Confidence 355689999999999999999998876 567788877655443221 1222111110000 0000000 1112
Q ss_pred cCCceEEEEecccccCC
Q 017792 134 SGSVDVVVVDSVAALVP 150 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~ 150 (366)
.....+++||.+..+..
T Consensus 146 ~~~~~vliIDEid~l~~ 162 (516)
T 1sxj_A 146 NGKHFVIIMDEVDGMSG 162 (516)
T ss_dssp STTSEEEEECSGGGCCT
T ss_pred cCCCeEEEEECCCccch
Confidence 34578999999998863
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.43 E-value=0.00077 Score=67.02 Aligned_cols=77 Identities=23% Similarity=0.410 Sum_probs=47.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+++..-+.|+||||+|||++++.++..+ +..+++++... +... + .. ..+..+..+-.....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~-----l~~~-------~---~g-~~~~~~~~~f~~A~~ 295 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE-----IMSK-------L---AG-ESESNLRKAFEEAEK 295 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHH-----HHTS-------C---TT-HHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchH-----hhhh-------h---cc-hhHHHHHHHHHHHHh
Confidence 5566679999999999999999997664 56677776421 1100 0 00 011112111222234
Q ss_pred CCceEEEEecccccCC
Q 017792 135 GSVDVVVVDSVAALVP 150 (366)
Q Consensus 135 ~~~~lvviDsl~~l~~ 150 (366)
..+.++++|.+..+.+
T Consensus 296 ~~p~iLfLDEId~l~~ 311 (489)
T 3hu3_A 296 NAPAIIFIDELDAIAP 311 (489)
T ss_dssp TCSEEEEEESHHHHCB
T ss_pred cCCcEEEecchhhhcc
Confidence 5678999999998875
No 211
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.43 E-value=0.00019 Score=59.14 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
.+.-+.|+||+|+|||+++..+.......+...+ ++..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~ 60 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL 60 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence 3455899999999999999998876655566655 6544
No 212
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.43 E-value=0.00032 Score=65.88 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=30.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEeCCC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEH 96 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~--~gg~vl~id~e~ 96 (366)
+++|.||||||||||+..+...+.. .++.+.+++.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 9999999999999999999988863 356677776654
No 213
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.43 E-value=1.5e-05 Score=74.55 Aligned_cols=70 Identities=13% Similarity=0.061 Sum_probs=37.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE--eCCCCCC-HHHHh-hcccccCcceecC----CCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI--DAEHALD-PSLAE-TIGVKTENLLLAQ----PDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i--d~e~~~~-~~~~~-~ig~~~~~~~~~~----~~~~e~~ 124 (366)
+.+|++++|+|+||+|||||++.+++...+..|.+.+. .+.+... ..+.+ ..|+.+|.+.+.. ..+++++
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~e~l 247 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEEEEL 247 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCHHHH
Confidence 56789999999999999999999998887776764331 2222211 11111 2678888765543 3466554
No 214
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.43 E-value=0.00023 Score=67.81 Aligned_cols=87 Identities=17% Similarity=0.191 Sum_probs=55.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhc--------CCeEEEEeCCCCC-CH-----HHHhhc-ccccCcceecCCCCHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQ--------GGYCVFIDAEHAL-DP-----SLAETI-GVKTENLLLAQPDCGE 122 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~--------gg~vl~id~e~~~-~~-----~~~~~i-g~~~~~~~~~~~~~~e 122 (366)
+..+.|+||+|+|||||+..++..+... +..++|++..... .. .+...+ |.... ....+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~ 120 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVP----KHGINLG 120 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCC----SSSSCTH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCC----CCCCCHH
Confidence 3489999999999999999999887654 6678888754322 21 112222 22111 1222345
Q ss_pred HHHHHHHHHHhcCCceEEEEecccccC
Q 017792 123 QALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 123 ~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
+++..+...+..... +++||.+..+.
T Consensus 121 ~~~~~l~~~l~~~~~-vlilDEi~~l~ 146 (384)
T 2qby_B 121 EYIDKIKNGTRNIRA-IIYLDEVDTLV 146 (384)
T ss_dssp HHHHHHHHHHSSSCE-EEEEETTHHHH
T ss_pred HHHHHHHHHhccCCC-EEEEECHHHhc
Confidence 666666655555444 99999998775
No 215
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.42 E-value=0.0013 Score=56.77 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=48.1
Q ss_pred hHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC--CeEEEEeCCCCCCHHHHhhcccccCcceecCCCC
Q 017792 43 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG--GYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120 (366)
Q Consensus 43 ~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g--g~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~ 120 (366)
+..|...+. .+-+ ..+.|+||+|+|||+|+..++..+...+ ...+.++..... .
T Consensus 26 ~~~l~~~l~-~~~~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~---------------------~ 81 (226)
T 2chg_A 26 IQRLKGYVE-RKNI--PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER---------------------G 81 (226)
T ss_dssp HHHHHHHHH-TTCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT---------------------C
T ss_pred HHHHHHHHh-CCCC--CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc---------------------C
Confidence 344555554 2211 2389999999999999999998775432 234444432211 1
Q ss_pred HHHHHHHHHHHHh-----cCCceEEEEecccccC
Q 017792 121 GEQALSLVDTLIR-----SGSVDVVVVDSVAALV 149 (366)
Q Consensus 121 ~e~~l~~~~~~~~-----~~~~~lvviDsl~~l~ 149 (366)
...+...+..... .....+++||.+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 115 (226)
T 2chg_A 82 IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT 115 (226)
T ss_dssp HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC
T ss_pred hHHHHHHHHHHhcccCCCccCceEEEEeChhhcC
Confidence 2222222222221 2457899999988775
No 216
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.41 E-value=0.0019 Score=62.09 Aligned_cols=76 Identities=25% Similarity=0.353 Sum_probs=47.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 135 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~ 135 (366)
.++.-++|+||+|+|||+|+..++..+ +..+++++........ +| .. +..+..+.......
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~~----~g-----------~~-~~~~~~~~~~a~~~ 206 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSKY----VG-----------EG-EKLVRALFAVAREL 206 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC----------------------C-HHHHHHHHHHHHHS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhccc----cc-----------hH-HHHHHHHHHHHHhc
Confidence 345679999999999999999996654 5667777764432210 00 01 12222222233344
Q ss_pred CceEEEEecccccCC
Q 017792 136 SVDVVVVDSVAALVP 150 (366)
Q Consensus 136 ~~~lvviDsl~~l~~ 150 (366)
...+++||.+..+..
T Consensus 207 ~~~il~iDEid~l~~ 221 (389)
T 3vfd_A 207 QPSIIFIDQVDSLLC 221 (389)
T ss_dssp SSEEEEEETGGGGC-
T ss_pred CCeEEEEECchhhcc
Confidence 678999999998864
No 217
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.40 E-value=9.5e-05 Score=64.85 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
++|++++|+||||||||||+..++..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999987764
No 218
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.40 E-value=3.8e-05 Score=73.26 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=42.8
Q ss_pred CChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEeCCCCCCHHHHhhcccccCcceecC
Q 017792 41 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 117 (366)
Q Consensus 41 TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~-~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~ 117 (366)
.|+..|...+ +|++++|+|+||+|||||++.+++... +..|.+.+..+... .......+++.+++..++.
T Consensus 204 ~gl~~L~~~~------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~-~tt~~~~i~~v~q~~~l~d 274 (358)
T 2rcn_A 204 DGLKPLEEAL------TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQ-HTTTAARLYHFPHGGDVID 274 (358)
T ss_dssp BTHHHHHHHH------TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------------CCCEEEECTTSCEEEE
T ss_pred cCHHHHHHhc------CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCc-cceEEEEEEEECCCCEecC
Confidence 4677776654 568999999999999999999998877 66666444322211 1223345677766655443
No 219
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.40 E-value=0.00087 Score=63.76 Aligned_cols=76 Identities=18% Similarity=0.318 Sum_probs=48.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 135 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~ 135 (366)
.+..-+.|+||+|+|||+|++.++..+ +..+++++....... .....+..+..+.......
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~~~~a~~~ 175 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK----------------WVGEGEKMVRALFAVARCQ 175 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS----------------STTHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc----------------ccchHHHHHHHHHHHHHhc
Confidence 345679999999999999999997765 456677765322110 0001222233333333345
Q ss_pred CceEEEEecccccCC
Q 017792 136 SVDVVVVDSVAALVP 150 (366)
Q Consensus 136 ~~~lvviDsl~~l~~ 150 (366)
...+++||.+..+.+
T Consensus 176 ~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 176 QPAVIFIDEIDSLLS 190 (357)
T ss_dssp CSEEEEEETHHHHTB
T ss_pred CCeEEEEeCchhhhc
Confidence 678999999998864
No 220
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=97.40 E-value=0.00065 Score=65.07 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=66.7
Q ss_pred CcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEeCCCCCCH--HHHhhc-ccccC
Q 017792 37 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDP--SLAETI-GVKTE 111 (366)
Q Consensus 37 ~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~--gg~vl~id~e~~~~~--~~~~~i-g~~~~ 111 (366)
+.+.||+..+|.++. +-+|+-.+|+|++|+|||+|+.+++..+... +-.|+|+---+.... .+.+.+ |
T Consensus 157 e~~~tGiraID~l~P---igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~G---- 229 (427)
T 3l0o_A 157 DPKIYSTRLIDLFAP---IGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNA---- 229 (427)
T ss_dssp STTCHHHHHHHHHSC---CBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCCS----
T ss_pred cchhccchhhhhccc---ccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhCC----
Confidence 578999999999998 7899999999999999999999998887653 335666543221110 111111 2
Q ss_pred cceecCC--CC-H------HHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 112 NLLLAQP--DC-G------EQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 112 ~~~~~~~--~~-~------e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
..+... .. . .-.+...+.+...+.--++++|+++.+.
T Consensus 230 -~VV~atadep~~~r~~~a~~altiAEyfrd~G~dVLil~DslTR~A 275 (427)
T 3l0o_A 230 -IVIAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLA 275 (427)
T ss_dssp -EEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred -eEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecccchHHH
Confidence 112211 11 1 2223344555556667788899997553
No 221
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0023 Score=59.90 Aligned_cols=96 Identities=16% Similarity=0.066 Sum_probs=56.1
Q ss_pred HHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-------CCeEEEEeCCCCCCH-----HHHhhc-ccccCc
Q 017792 46 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-------GGYCVFIDAEHALDP-----SLAETI-GVKTEN 112 (366)
Q Consensus 46 LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-------gg~vl~id~e~~~~~-----~~~~~i-g~~~~~ 112 (366)
|-..+. +| ++..+.|+||||+|||++++.++..+... .-.++++++....++ .+++.+ |. +
T Consensus 36 L~~~i~-~~--~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~---~ 109 (318)
T 3te6_A 36 IYDSLM-SS--QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE---N 109 (318)
T ss_dssp HHHHHH-TT--CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC---C
T ss_pred HHHHhc-CC--CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC---C
Confidence 334444 44 45568999999999999999999988643 125788887665442 223333 21 1
Q ss_pred ceecCCCCHHHHHHHHHHH-HhcCCceEEEEecccccC
Q 017792 113 LLLAQPDCGEQALSLVDTL-IRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 113 ~~~~~~~~~e~~l~~~~~~-~~~~~~~lvviDsl~~l~ 149 (366)
.......+.+-..+... -.....-++++|.+..+.
T Consensus 110 --~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 110 --LCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp ----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred --CCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 11122233333333332 123456789999998775
No 222
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.36 E-value=0.00062 Score=65.35 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=56.8
Q ss_pred CCCEEEE--EcCCCCcHHHHHHHHHHHHhhc------CCeEEEEeCCCCCCH-----HHHhhcccccCcceecCCCCHHH
Q 017792 57 KGRVVEI--YGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 57 ~G~ii~I--~G~~GsGKTTL~~~l~~~~~~~------gg~vl~id~e~~~~~-----~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
.+..+.| +|++|+|||||+..++..+... +..++|++....... .+...++.... ....+..+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~ 124 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ----VRGAPALD 124 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC----CTTCCHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHH
Confidence 4557888 9999999999999999887653 456788886433332 22333443211 11234556
Q ss_pred HHHHHHHHHh-cCCceEEEEecccccC
Q 017792 124 ALSLVDTLIR-SGSVDVVVVDSVAALV 149 (366)
Q Consensus 124 ~l~~~~~~~~-~~~~~lvviDsl~~l~ 149 (366)
++..+...+. .....+++||.+..+.
T Consensus 125 ~~~~l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 125 ILKALVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEEeCHHHHh
Confidence 6655554443 3457799999998875
No 223
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.36 E-value=0.00048 Score=60.74 Aligned_cols=135 Identities=15% Similarity=0.096 Sum_probs=77.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
-..|.+..|+|+-||||||.++..+..+...+..++.+...... ......++|...+-..+... .+++..+
T Consensus 25 ~~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~---~di~~~i--- 98 (219)
T 3e2i_A 25 YHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKA---SEIMTHD--- 98 (219)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSG---GGGGGSC---
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCH---HHHHHHH---
Confidence 35689999999999999997777778887777777777543221 12345566654443333222 2222221
Q ss_pred HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeecc
Q 017792 132 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC 211 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~ 211 (366)
....+.|.||..+.+.+ .+...+..|. ..|++||+..=.++--+. .|.+
T Consensus 99 --~~~~dvV~IDEaQFf~~------------------~~v~~l~~la----~~gi~Vi~~GLd~DF~~~-~F~~------ 147 (219)
T 3e2i_A 99 --LTNVDVIGIDEVQFFDD------------------EIVSIVEKLS----ADGHRVIVAGLDMDFRGE-PFEP------ 147 (219)
T ss_dssp --CTTCSEEEECCGGGSCT------------------HHHHHHHHHH----HTTCEEEEEEESBCTTSC-BCTT------
T ss_pred --hcCCCEEEEechhcCCH------------------HHHHHHHHHH----HCCCEEEEeecccccccC-CCcc------
Confidence 24688999999988752 1223444444 369999988665543221 1221
Q ss_pred CCceeeeeceEEEEEE
Q 017792 212 GGNALKFYASVRLNIK 227 (366)
Q Consensus 212 gG~~l~~~ad~~i~l~ 227 (366)
...+--+||.+..|+
T Consensus 148 -~~~Ll~~Ad~v~kl~ 162 (219)
T 3e2i_A 148 -MPKLMAVSEQVTKLQ 162 (219)
T ss_dssp -HHHHHHHCSEEEEEC
T ss_pred -HHHHHHhcceEEEee
Confidence 122445677776665
No 224
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.34 E-value=0.00025 Score=68.10 Aligned_cols=35 Identities=40% Similarity=0.527 Sum_probs=29.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 91 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~ 91 (366)
++++|++++|+||||||||||+..+++.. ++.+++
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 69999999999999999999999998754 555443
No 225
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.34 E-value=0.00032 Score=61.39 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=23.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
..+.|+||+|+|||||+..++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 38999999999999999999887754
No 226
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.31 E-value=0.00069 Score=67.47 Aligned_cols=37 Identities=38% Similarity=0.495 Sum_probs=29.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
-+|+| +.|+||||+|||||++.++..+. ...+++++.
T Consensus 62 ~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~ 98 (499)
T 2dhr_A 62 RIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGS 98 (499)
T ss_dssp CCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGG
T ss_pred CCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehh
Confidence 35667 89999999999999999988763 456777754
No 227
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.31 E-value=0.0013 Score=64.29 Aligned_cols=99 Identities=21% Similarity=0.184 Sum_probs=62.2
Q ss_pred hHHHHHhhCCCC---c----CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHH------HHhhccc
Q 017792 43 SFALDIALGTGG---L----PKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPS------LAETIGV 108 (366)
Q Consensus 43 ~~~LD~~L~~GG---i----~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~------~~~~ig~ 108 (366)
...|-.+|+ +. + .+..++.++|++|+||||++..++..+... |.+|++++.+...... +....++
T Consensus 79 ~~~l~~~l~-~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l 157 (433)
T 2xxa_A 79 RNELVAAMG-EENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGV 157 (433)
T ss_dssp HHHHHHHHC-SSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTC
T ss_pred HHHHHHHhc-cccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCe
Confidence 345556666 32 1 124689999999999999999999999988 8899999987533311 2223332
Q ss_pred ccCcceecCC---CCHHHHHHHHHHHHhcCCceEEEEecccc
Q 017792 109 KTENLLLAQP---DCGEQALSLVDTLIRSGSVDVVVVDSVAA 147 (366)
Q Consensus 109 ~~~~~~~~~~---~~~e~~l~~~~~~~~~~~~~lvviDsl~~ 147 (366)
+ ++.. .+..+++......+.....++++||....
T Consensus 158 ~-----v~~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 158 D-----FFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGR 194 (433)
T ss_dssp E-----ECCCCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCC
T ss_pred e-----EEeCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 2 2221 23445433222223334689999999543
No 228
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.30 E-value=0.0023 Score=55.59 Aligned_cols=93 Identities=19% Similarity=0.270 Sum_probs=61.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC-CC---HHHHhhcccccCcc---eecCCC-------CH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD---PSLAETIGVKTENL---LLAQPD-------CG 121 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~-~~---~~~~~~ig~~~~~~---~~~~~~-------~~ 121 (366)
.+| .+.|++++|.||||.+.-++..+.-.|.+|+++.+-.. .. ....+.+++.+... +..... ..
T Consensus 27 ~~g-~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 27 ERG-IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCC-CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred cCc-eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 444 67788899999999999999999989999999976543 22 24455554322111 111111 12
Q ss_pred HHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 122 EQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 122 e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
...+..+...+.+..++++|+|.+....
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al 133 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMV 133 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccc
Confidence 2344556666777889999999998764
No 229
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.30 E-value=0.00024 Score=62.27 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=33.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEeC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDA 94 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~-~~gg~vl~id~ 94 (366)
+++|.++.|.|++||||||++..++..+. ..|..++++++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 56889999999999999999999998887 34545778764
No 230
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.30 E-value=0.00011 Score=65.48 Aligned_cols=35 Identities=26% Similarity=0.100 Sum_probs=28.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 92 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i 92 (366)
..++|.+++|.|++|||||||+..++.. ++.+.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~ 50 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLL 50 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEE
Confidence 4578999999999999999999888765 5665544
No 231
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=97.29 E-value=0.0011 Score=65.20 Aligned_cols=56 Identities=29% Similarity=0.549 Sum_probs=47.6
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEe
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFID 93 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id 93 (366)
..+.+.||+..+|.++. +-+|+-++|+|++|+|||+|+..++.+.... ++-++|.-
T Consensus 133 ~~e~l~TGir~ID~l~p---igkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~ 189 (482)
T 2ck3_D 133 EQEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 189 (482)
T ss_dssp CCCEECCSCHHHHHHSC---EETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE
T ss_pred cCcCCccceEEEecccc---cccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE
Confidence 35689999999999998 8899999999999999999999999987543 45566653
No 232
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.26 E-value=0.00087 Score=63.11 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=23.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcC
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQRQG 86 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~~~g 86 (366)
+.|+||||+||||+++.++..+...+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 89999999999999999999876543
No 233
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.26 E-value=0.0018 Score=64.52 Aligned_cols=102 Identities=18% Similarity=0.091 Sum_probs=60.2
Q ss_pred HHHHHhhCCC---Cc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH------HHHhhccccc
Q 017792 44 FALDIALGTG---GL----PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVKT 110 (366)
Q Consensus 44 ~~LD~~L~~G---Gi----~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~------~~~~~ig~~~ 110 (366)
.+|..+++ + ++ .+..++.|+|++|+||||++..++..+...|.++++++.+..... .+..+.++..
T Consensus 81 ~eL~~ll~-~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v 159 (504)
T 2j37_W 81 KELVKLVD-PGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 (504)
T ss_dssp HHHHHHHC-CCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHhc-cccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceE
Confidence 34667777 4 34 235589999999999999999999998887888899887543221 1122223221
Q ss_pred CcceecCCCCHHHHH-HHHHHHHhcCCceEEEEecccccC
Q 017792 111 ENLLLAQPDCGEQAL-SLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 111 ~~~~~~~~~~~e~~l-~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
-. ........+++ ..+..+ .....++++||....+.
T Consensus 160 ~~--~~~~~dp~~i~~~al~~~-~~~~~DvvIIDTpG~~~ 196 (504)
T 2j37_W 160 YG--SYTEMDPVIIASEGVEKF-KNENFEIIIVDTSGRHK 196 (504)
T ss_dssp EE--CCCCSCHHHHHHHHHHHH-HHTTCCEEEEEECCCCT
T ss_pred Ec--cCCCCCHHHHHHHHHHHH-HHCCCcEEEEeCCCCcc
Confidence 00 01122233332 222222 22467899999876553
No 234
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.25 E-value=0.00019 Score=62.28 Aligned_cols=28 Identities=21% Similarity=0.090 Sum_probs=24.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+++|.++.|+|++||||||++..++..+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5688999999999999999999998776
No 235
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.24 E-value=0.00018 Score=72.61 Aligned_cols=41 Identities=29% Similarity=0.404 Sum_probs=35.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEeCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDAE 95 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg-~vl~id~e 95 (366)
+++|+++.|+|+||||||||++.+++.+.+.+| .+.|++++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 568999999999999999999999999887765 56678764
No 236
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=97.23 E-value=0.00074 Score=66.65 Aligned_cols=110 Identities=19% Similarity=0.316 Sum_probs=66.2
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhc---cccc
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETI---GVKT 110 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~i---g~~~ 110 (366)
.+.+.||+..+|.++. +-+|+-.+|+|++|+|||+|++..+.+....+..|+|.---+..+ ..+.+.+ +..-
T Consensus 143 ~epl~TGiraID~l~P---igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~ 219 (502)
T 2qe7_A 143 HEPLQTGIKAIDSMIP---IGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALD 219 (502)
T ss_dssp CSBCCCSCHHHHHSSC---CBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHTTCST
T ss_pred CCccccceeecccccc---cccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhhCCCcc
Confidence 4578999999999998 889999999999999999997755555444444567765332222 1222111 2111
Q ss_pred CcceecC-C-C-CHHHH------HHHHHHHHhcCCceEEEEeccccc
Q 017792 111 ENLLLAQ-P-D-CGEQA------LSLVDTLIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 111 ~~~~~~~-~-~-~~e~~------l~~~~~~~~~~~~~lvviDsl~~l 148 (366)
.-+.+.. . . ...+. +...+.+...+.--++++|+++.+
T Consensus 220 ~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 220 YTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQ 266 (502)
T ss_dssp TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 1112221 1 1 12222 334444555566778899998754
No 237
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.22 E-value=0.00022 Score=61.04 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=26.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
|++++.++.|.|++||||||++..++..+
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 56788999999999999999999998765
No 238
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=97.21 E-value=0.00071 Score=66.89 Aligned_cols=110 Identities=21% Similarity=0.352 Sum_probs=66.1
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhc---cccc
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETI---GVKT 110 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~i---g~~~ 110 (366)
.+.+.||+..+|.++. +-+|+-.+|+|++|+|||+|++..+.+....+..|+|.---+... ..+.+.+ +..-
T Consensus 156 ~epl~TGiraID~l~P---igrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~ 232 (515)
T 2r9v_A 156 DTPLQTGIKAIDSMIP---IGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQYGAME 232 (515)
T ss_dssp CSEECCSCHHHHHHSC---EETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHHTTGGG
T ss_pred CcchhcCccccccccc---cccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcc
Confidence 4678999999999998 889999999999999999997655544444444567764332221 1122111 1111
Q ss_pred Ccceec-CCC-C-HHH------HHHHHHHHHhcCCceEEEEeccccc
Q 017792 111 ENLLLA-QPD-C-GEQ------ALSLVDTLIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 111 ~~~~~~-~~~-~-~e~------~l~~~~~~~~~~~~~lvviDsl~~l 148 (366)
.-+.+. ..+ + ... .+...+.+...+.--++++|+++.+
T Consensus 233 rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 233 YTTVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp GEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHHH
Confidence 111121 111 1 222 2334444555566778899998754
No 239
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.20 E-value=0.001 Score=60.39 Aligned_cols=38 Identities=29% Similarity=0.217 Sum_probs=28.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+.++..-+.|+||+|+|||+|+..++... +...++++.
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~ 97 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICS 97 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEEC
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeC
Confidence 34555679999999999999999998864 445555543
No 240
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.19 E-value=0.00018 Score=60.56 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.|.++.|.|+|||||||++..++..+. ..|+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~-----~~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN-----MEFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT-----CEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEec
Confidence 467899999999999999999987653 256664
No 241
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.19 E-value=0.00039 Score=60.13 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=32.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
..+.|+||+|+|||||+..++..+...+..++|++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 679999999999999999999988877788888865
No 242
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=97.19 E-value=0.00082 Score=66.30 Aligned_cols=55 Identities=24% Similarity=0.472 Sum_probs=47.5
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEe
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFID 93 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id 93 (366)
.+.+.||+..+|.++. +-+|+-++|+|++|+|||+|+..++.+.... ++.++|..
T Consensus 146 ~e~l~TGirvID~l~p---igkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~ 201 (498)
T 1fx0_B 146 LSIFETGIKVVNLLAP---YRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG 201 (498)
T ss_dssp CCCCCCSCTTHHHHSC---CCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE
T ss_pred ccccccceeEeeeecc---cccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE
Confidence 5689999999999998 8899999999999999999999999987543 45667754
No 243
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=97.18 E-value=0.0011 Score=65.62 Aligned_cols=111 Identities=18% Similarity=0.335 Sum_probs=66.0
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHH-HHHHHHhh-------cCCeEEEEeCCCCCC--HHHHhh
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLAL-HVIAEAQR-------QGGYCVFIDAEHALD--PSLAET 105 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~-~l~~~~~~-------~gg~vl~id~e~~~~--~~~~~~ 105 (366)
.+.+.||+..+|.++. +-+|+-.+|+|++|+|||+|++ +++..... .+..|+|.---+..+ ..+.+.
T Consensus 143 ~epl~TGiraID~l~P---igrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~ 219 (510)
T 2ck3_A 143 REPMQTGIKAVDSLVP---IGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKR 219 (510)
T ss_dssp CSBCCCSCHHHHHHSC---CBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHH
T ss_pred Cccccccceeeccccc---cccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHH
Confidence 4578999999999998 8899999999999999999966 44444442 344577765332222 112211
Q ss_pred c---ccccCcceec-CC-CC-HHH------HHHHHHHHHhcCCceEEEEecccccC
Q 017792 106 I---GVKTENLLLA-QP-DC-GEQ------ALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 106 i---g~~~~~~~~~-~~-~~-~e~------~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
+ +..-.-+.+. .. .+ ..+ .+...+.+...+.--++++|+++.+.
T Consensus 220 ~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 275 (510)
T 2ck3_A 220 LTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA 275 (510)
T ss_dssp HHHTTCGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHH
T ss_pred HHhcCCcccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHH
Confidence 1 1111111121 11 11 222 23344445555667788999987553
No 244
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=97.18 E-value=0.00091 Score=65.95 Aligned_cols=110 Identities=18% Similarity=0.348 Sum_probs=66.7
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhc---cccc
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETI---GVKT 110 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~i---g~~~ 110 (366)
.+.+.||+..+|.++. +-+|+-.+|+|++|+|||+|++..+.+....+..|+|+---+... ..+.+.+ |...
T Consensus 143 ~epl~TGikaID~l~P---igrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~ 219 (513)
T 3oaa_A 143 DQPVQTGYKAVDSMIP---IGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGALA 219 (513)
T ss_dssp CCBCCCSCHHHHHHSC---CBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEEESCCHHHHHHHHHHHHHHSCST
T ss_pred Ccccccceeeeccccc---cccCCEEEeecCCCCCcchHHHHHHHhhccCCceEEEEEecCChHHHHHHHHHHhhcCccc
Confidence 4688999999999998 889999999999999999997655554443444577764322211 1222222 2111
Q ss_pred CcceecCC--C-CHHH------HHHHHHHHHhcCCceEEEEeccccc
Q 017792 111 ENLLLAQP--D-CGEQ------ALSLVDTLIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 111 ~~~~~~~~--~-~~e~------~l~~~~~~~~~~~~~lvviDsl~~l 148 (366)
.-+.+... . ...+ .+...+.+...+.--++++|+++.+
T Consensus 220 ~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 220 NTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 11122211 1 1222 2333444455667778899999754
No 245
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.16 E-value=0.0037 Score=58.59 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=34.9
Q ss_pred ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh---cCCeEEEEeCC
Q 017792 42 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR---QGGYCVFIDAE 95 (366)
Q Consensus 42 G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~---~gg~vl~id~e 95 (366)
-+..|-..+. .|-++. +.|+||||+||||+++.++..+.. ....++.++..
T Consensus 45 ~~~~l~~~l~-~~~~~~--~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 45 AVTVLKKTLK-SANLPH--MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp THHHHHHHTT-CTTCCC--EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred HHHHHHHHHh-cCCCCE--EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 3456666665 343333 899999999999999999988753 23345556543
No 246
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.16 E-value=7.3e-05 Score=78.94 Aligned_cols=125 Identities=18% Similarity=0.232 Sum_probs=64.9
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
-|++++..++|+||||+|||||++.++..+. ...+.++....... .+|- ....+..++..+.
T Consensus 506 ~~~~~~~~vLL~GppGtGKT~Lakala~~~~---~~~i~v~~~~l~~~----~~g~--------~~~~i~~~f~~a~--- 567 (806)
T 1ypw_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPELLTM----WFGE--------SEANVREIFDKAR--- 567 (806)
T ss_dssp CCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT---CCCCCCCCSSSTTC----CTTT--------SSHHHHHHHHHHH---
T ss_pred cCCCCCceeEEECCCCCCHHHHHHHHHHHhC---CCEEEEechHhhhh----hcCc--------cHHHHHHHHHHHH---
Confidence 4788899999999999999999999998873 33344443222110 0110 0011223333332
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
...+.++++|.+..+.+...-. .++. .....+.+.+.|..+-......++.||.+++..+.++
T Consensus 568 -~~~p~vl~iDEid~l~~~r~~~--~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld 630 (806)
T 1ypw_A 568 -QAAPCVLFFDELDSIAKARGGN--IGDG-GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp -HHCSBCCCCSSHHHHCCTTTTC--CSHH-HHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGS
T ss_pred -hcCCeEEEEEChhhhhhhccCC--CCCc-chhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCC
Confidence 2346789999998886422111 0111 1122233333333332222334677777777665544
No 247
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=97.15 E-value=0.00036 Score=69.00 Aligned_cols=111 Identities=18% Similarity=0.272 Sum_probs=69.2
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhc---ccc-
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETI---GVK- 109 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~i---g~~- 109 (366)
.+.+.||+..+|.++. +-+|+-.+|+|++|+|||+|++..+.+....+..|+|.---+... ..+.+.+ +..
T Consensus 144 ~epl~TGiraID~l~P---igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~ 220 (507)
T 1fx0_A 144 YEPLQTGLIAIDAMIP---VGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAME 220 (507)
T ss_dssp CSBCCCSCTTTTTTSC---CBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGG
T ss_pred CCcccccceecccccc---cccCCEEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHHHHhcCccc
Confidence 4578999999999998 889999999999999999997755554444455667765332222 1222221 111
Q ss_pred --------cCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 110 --------TENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 110 --------~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
.+.+...+.....-.+...+.+...+.--++++|+++.+.
T Consensus 221 rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 268 (507)
T 1fx0_A 221 YTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQA 268 (507)
T ss_dssp SEEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred cceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHH
Confidence 1111111222234445555555556677888999987553
No 248
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.14 E-value=0.00015 Score=67.63 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=38.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE--eCCCCCC-HHH--HhhcccccCccee
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI--DAEHALD-PSL--AETIGVKTENLLL 115 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i--d~e~~~~-~~~--~~~ig~~~~~~~~ 115 (366)
+..|++++|+||||+|||||++.++ ...+..|.+.+- .+.+... ... ...+|+.+|.+.+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~ 226 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGF 226 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCC
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCc
Confidence 3457899999999999999999999 766667764431 3333322 111 1357888877644
No 249
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.14 E-value=0.00043 Score=72.63 Aligned_cols=125 Identities=20% Similarity=0.236 Sum_probs=63.9
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
.|+++..-++++||||+|||.|++.++..+. ...+.++. ...+.+.+| .+ +..+..+-...
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~---~~f~~v~~----~~l~s~~vG-----------es-e~~vr~lF~~A 566 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKG----PELLTMWFG-----------ES-EANVREIFDKA 566 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTTT---CEEEECCH----HHHHTTTCS-----------SC-HHHHHHHHHHH
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHhC---CceEEecc----chhhccccc-----------hH-HHHHHHHHHHH
Confidence 5777766689999999999999999987763 33333221 011111122 11 33333333334
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
+...+.++++|.+.++.+...-.. ++ ..+...|.+.+.|..+-..-...++.||.++...+.++
T Consensus 567 r~~~P~IifiDEiDsl~~~R~~~~--~~-~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD 630 (806)
T 3cf2_A 567 RQAAPCVLFFDELDSIAKARGGNI--GD-GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp HTTCSEEEECSCGGGCC-----------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSC
T ss_pred HHcCCceeechhhhHHhhccCCCC--CC-CchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCC
Confidence 456789999999999985332110 00 00112244555555554322234555555555444433
No 250
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.13 E-value=0.00029 Score=59.95 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
+.+| +++|+||||||||||+..+...+.
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 4466 999999999999999998887664
No 251
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=97.13 E-value=0.00012 Score=69.22 Aligned_cols=38 Identities=39% Similarity=0.474 Sum_probs=34.4
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHH
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLAL 76 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~ 76 (366)
...+|||+++||.+||-||+|.|.++.|.|+ |||+++.
T Consensus 18 ~~~~stG~~~lD~llghgGlp~g~~~li~e~---~~t~~~~ 55 (361)
T 4a8j_A 18 QPTTSTGSADLDSILGHMGLPLGNSVLVEEQ---STTEFHS 55 (361)
T ss_dssp CEEECCSCHHHHHHTTSSSEETTCEEEEEEC---SSCCTHH
T ss_pred CeeeccCCccHHHHhccCCccCCcEEEEeCC---CCCcHHH
Confidence 4689999999999997579999999999998 8999884
No 252
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.13 E-value=0.00053 Score=61.14 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=31.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 91 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~ 91 (366)
.+.+|.++.|.|++||||||++..++..+.. +..++.
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 4568999999999999999999999998877 666543
No 253
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.12 E-value=0.00018 Score=71.92 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=31.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+++|.+++|+||||||||||++.+++.+.+..+ ++.+..
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~g-iitied 295 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFIPPDAK-VVSIED 295 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCC-EEEEES
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCC-EEEEcC
Confidence 368999999999999999999999888866555 456654
No 254
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.10 E-value=0.00011 Score=68.31 Aligned_cols=62 Identities=15% Similarity=0.086 Sum_probs=37.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE--eCCCCCC-H--HHHhhcccccCcceec
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI--DAEHALD-P--SLAETIGVKTENLLLA 116 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i--d~e~~~~-~--~~~~~ig~~~~~~~~~ 116 (366)
+..|+++.|+||||||||||++.+++...+..|.+.+- ++.+... . ...+.+|+.+|.+.+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~ 232 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFA 232 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSST
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCC
Confidence 44679999999999999999999998888777764431 3333221 1 1123578888876543
No 255
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=97.08 E-value=0.0029 Score=63.08 Aligned_cols=109 Identities=19% Similarity=0.261 Sum_probs=67.9
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhc-------
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETI------- 106 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~i------- 106 (366)
.+.+.||+..+|.++. +-+|+-.+|+|++|+|||+|+.+++... ....|+|+..-+..+ ..+.+.+
T Consensus 208 ~epl~TGirvID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~ 282 (588)
T 3mfy_A 208 EVPLITGQRVIDTFFP---QAKGGTAAIPGPAGSGKTVTQHQLAKWS--DAQVVIYIGCGERGNEMTDVLEEFPKLKDPK 282 (588)
T ss_dssp CSEECCSCHHHHHHSC---EETTCEEEECSCCSHHHHHHHHHHHHHS--SCSEEEEEECCSSSSHHHHHHHHTTTCEETT
T ss_pred CcccccCcchhhccCC---cccCCeEEeecCCCCCHHHHHHHHHhcc--CCCEEEEEEecccHHHHHHHHHHHHHhcccc
Confidence 4678899999999998 8899999999999999999998876542 334677765433333 2333332
Q ss_pred -cc-ccCc-ceecCCC--C-HH------HHHHHHHHHHhcCCceEEEEecccccC
Q 017792 107 -GV-KTEN-LLLAQPD--C-GE------QALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 107 -g~-~~~~-~~~~~~~--~-~e------~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
|- ..++ +.+.... . .. -.+...+.+...+.--++++||++.+.
T Consensus 283 ~g~~~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~A 337 (588)
T 3mfy_A 283 TGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWA 337 (588)
T ss_dssp TTEEGGGGEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTCC
T ss_pred cccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHHH
Confidence 11 1112 1222211 1 11 123334444455666788899998664
No 256
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.06 E-value=0.00037 Score=60.78 Aligned_cols=28 Identities=7% Similarity=0.299 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
.+|++++|+||+|||||||+..++....
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999887653
No 257
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.06 E-value=0.00038 Score=62.50 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.++.|+|+||||||||++.++..+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998554
No 258
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.05 E-value=0.00031 Score=61.19 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
..+|.++.|+|||||||||++..++..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5689999999999999999999998766
No 259
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.05 E-value=0.00032 Score=61.09 Aligned_cols=38 Identities=32% Similarity=0.378 Sum_probs=29.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
-+++|.+++|+|++||||||++..++..+. .+.+++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D 54 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQD 54 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCC
Confidence 467899999999999999999998876542 24566644
No 260
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.05 E-value=0.0005 Score=62.43 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
++.++.|+|+|||||||++..++..+...|..+++++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 46789999999999999999999887655666665664
No 261
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.04 E-value=0.0048 Score=56.88 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=49.2
Q ss_pred hHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCC
Q 017792 43 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120 (366)
Q Consensus 43 ~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~--gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~ 120 (366)
+..|...+. .|-.+. +.|+||+|+||||++..++..+... ...+++++.... ..
T Consensus 30 ~~~l~~~l~-~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~---------------------~~ 85 (323)
T 1sxj_B 30 IDRLQQIAK-DGNMPH--MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD---------------------RG 85 (323)
T ss_dssp HHHHHHHHH-SCCCCC--EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC---------------------CS
T ss_pred HHHHHHHHH-cCCCCe--EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc---------------------cC
Confidence 345555665 332222 8999999999999999999887432 223555553321 11
Q ss_pred HHHHHHHHHHHHh------cCCceEEEEecccccC
Q 017792 121 GEQALSLVDTLIR------SGSVDVVVVDSVAALV 149 (366)
Q Consensus 121 ~e~~l~~~~~~~~------~~~~~lvviDsl~~l~ 149 (366)
.+++...+..+.. .....+++||.+..+.
T Consensus 86 ~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~ 120 (323)
T 1sxj_B 86 IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT 120 (323)
T ss_dssp HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC
T ss_pred hHHHHHHHHHHHhccccCCCCCceEEEEECcccCC
Confidence 2333333332220 2347899999987775
No 262
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.04 E-value=0.00079 Score=57.48 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=29.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
...-.++.|+|++|||||||+..++..+...+..+..+.
T Consensus 3 ~~~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 3 KTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence 344568999999999999999999998876665544444
No 263
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.04 E-value=9.9e-05 Score=71.79 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGY 88 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~ 88 (366)
+++|+||||||||||++.+++...+..|.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~Gs 99 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGA 99 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCce
Confidence 99999999999999999999987776665
No 264
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.03 E-value=0.0016 Score=60.81 Aligned_cols=97 Identities=20% Similarity=0.167 Sum_probs=56.8
Q ss_pred hHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC------C-HH----HHhhccc---
Q 017792 43 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------D-PS----LAETIGV--- 108 (366)
Q Consensus 43 ~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~------~-~~----~~~~ig~--- 108 (366)
+..|...+. .|.++.|+|+.|+|||||+.+++... + ++|++..... . .. +.+.++-
T Consensus 21 l~~L~~~l~-----~~~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 90 (350)
T 2qen_A 21 SRKLEESLE-----NYPLTLLLGIRRVGKSSLLRAFLNER----P-GILIDCRELYAERGHITREELIKELQSTISPFQK 90 (350)
T ss_dssp HHHHHHHHH-----HCSEEEEECCTTSSHHHHHHHHHHHS----S-EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHh-----cCCeEEEECCCcCCHHHHHHHHHHHc----C-cEEEEeecccccccCCCHHHHHHHHHHHHHHHHh
Confidence 344555554 24799999999999999999987664 2 7888764321 1 11 1121210
Q ss_pred ---------ccCccee-cCCCCHHHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 109 ---------KTENLLL-AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 109 ---------~~~~~~~-~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
....... .......+++..+.........-+++||.+..+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~ 141 (350)
T 2qen_A 91 FQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLR 141 (350)
T ss_dssp HHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGG
T ss_pred HhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHh
Confidence 0000000 0123566777666655543236789999998875
No 265
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.01 E-value=0.00063 Score=57.93 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQ 85 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~ 85 (366)
|.++.|.|++||||||++..++..+...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 30 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKE 30 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999998876543
No 266
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.00 E-value=0.00056 Score=56.13 Aligned_cols=33 Identities=18% Similarity=-0.045 Sum_probs=24.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+.-+.|+|++|+|||++++.+..... ..++++.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~----~~~~~~~ 59 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT----PWVSPAR 59 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS----CEECCSS
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC----CeEEech
Confidence 34588999999999999888765432 4455543
No 267
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.00 E-value=0.00066 Score=64.25 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=36.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
..+|.+++|+|+||+|||||+..++..+.+.++.+..++.+.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 457899999999999999999999999988888888777654
No 268
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.00 E-value=0.0026 Score=54.73 Aligned_cols=84 Identities=18% Similarity=0.259 Sum_probs=54.1
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCce
Q 017792 60 VVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 138 (366)
Q Consensus 60 ii~I~-G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~ 138 (366)
++.|+ +..|+||||++..++..+...|.+|+++|.+.... ....++....++.+..... +.+...+..+. ...+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~--~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~--~~yD 77 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMS--LTNWSKAGKAAFDVFTAAS-EKDVYGIRKDL--ADYD 77 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCH--HHHHHTTSCCSSEEEECCS-HHHHHTHHHHT--TTSS
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCC--HHHHHhcCCCCCcEEecCc-HHHHHHHHHhc--CCCC
Confidence 45666 56889999999999999999888999999874332 2222222233333333222 44444454442 3589
Q ss_pred EEEEeccccc
Q 017792 139 VVVVDSVAAL 148 (366)
Q Consensus 139 lvviDsl~~l 148 (366)
.++||....+
T Consensus 78 ~viiD~~~~~ 87 (206)
T 4dzz_A 78 FAIVDGAGSL 87 (206)
T ss_dssp EEEEECCSSS
T ss_pred EEEEECCCCC
Confidence 9999986544
No 269
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.00 E-value=0.00075 Score=58.47 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
+|.++.|.|++||||||++..++..+...+ .++...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~ 38 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTE 38 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEec
Confidence 467899999999999999999998876544 554443
No 270
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.99 E-value=0.00043 Score=62.56 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=24.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++|.+++|.||+||||||+++.++..+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999998554
No 271
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.99 E-value=0.00071 Score=57.62 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
++.|.|++||||||++..++..+...+-.+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 6899999999999999999988765555566664
No 272
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.99 E-value=0.0056 Score=56.87 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=32.9
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
..|-.++..|.++ .++.+.||+|+|||+++..++..+ +..+++++..
T Consensus 36 ~~l~~~l~~~~~~--~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~ 82 (324)
T 3u61_B 36 ETFKSITSKGKIP--HIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGS 82 (324)
T ss_dssp HHHHHHHHTTCCC--SEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETT
T ss_pred HHHHHHHHcCCCC--eEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEccc
Confidence 3444455423333 478889999999999999997766 4567777753
No 273
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.98 E-value=0.00079 Score=63.97 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=33.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
+.+.+++|+|+||+|||||+..+++...+.++++..+..+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
Confidence 4577999999999999999999999888888876666544
No 274
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.96 E-value=0.001 Score=56.43 Aligned_cols=37 Identities=32% Similarity=0.321 Sum_probs=31.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
.++.|+|++|||||||+..++..+...+.+|..+...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 4789999999999999999999888777666666643
No 275
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.91 E-value=0.00035 Score=68.04 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=24.4
Q ss_pred cCCCCE--EEEEcCCCCcHHHHHHHHHHH
Q 017792 55 LPKGRV--VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 55 i~~G~i--i~I~G~~GsGKTTL~~~l~~~ 81 (366)
+++|++ ++|+|+||||||||++.+++.
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 779999 999999999999999999876
No 276
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.89 E-value=0.0086 Score=59.63 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=29.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CC--eEEEEeCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GG--YCVFIDAE 95 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~--gg--~vl~id~e 95 (366)
+.++.-++|+|.+||||||+++.++..+... .+ .++.+|..
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 4567889999999999999999988755432 23 44556654
No 277
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.89 E-value=0.00057 Score=58.15 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+|.++.|.|++||||||++..++..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999997655
No 278
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.85 E-value=0.00078 Score=59.25 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.+++|.|++||||||++..++..+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 279
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.82 E-value=0.0014 Score=56.98 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=29.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 92 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i 92 (366)
.+|.++.|.|++||||||++..++..+...+-.+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 3578999999999999999999998876555555443
No 280
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.82 E-value=0.0024 Score=59.04 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=36.6
Q ss_pred CCCcccCChHHHHHhh---C-CCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 35 HVPVVSTGSFALDIAL---G-TGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L---~-~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
+...||||-+....+- . ...-..+.++.|+|..|+||||++..++..+...|.+|+.+|.+.
T Consensus 14 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 14 KDLTIPTGADGEGSVQVHLDEADKITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp --------------------------CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred ccccCCcCccccchhhhhhccccccCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4567788777654332 1 012235678999999999999999999999998899999999874
No 281
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.80 E-value=0.00077 Score=56.88 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.++.|.|++||||||+++.++..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999987765
No 282
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.79 E-value=0.00031 Score=71.24 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=32.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+.++.|.|+||+||||++..++..+...+.++++...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 5799999999999999999999988888888777654
No 283
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.78 E-value=0.0063 Score=59.69 Aligned_cols=69 Identities=23% Similarity=0.216 Sum_probs=42.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCce
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 138 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~ 138 (366)
..+.|+||||+|||||++.++..+. ...+.++...... ..+.+.+..+..........
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~---~~f~~l~a~~~~~-------------------~~ir~~~~~a~~~~~~~~~~ 108 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN---ADVERISAVTSGV-------------------KEIREAIERARQNRNAGRRT 108 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT---CEEEEEETTTCCH-------------------HHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC---CCeEEEEeccCCH-------------------HHHHHHHHHHHHhhhcCCCc
Confidence 4589999999999999999987763 3334444211100 01223333333333345678
Q ss_pred EEEEecccccC
Q 017792 139 VVVVDSVAALV 149 (366)
Q Consensus 139 lvviDsl~~l~ 149 (366)
+++||.+..+.
T Consensus 109 iLfIDEI~~l~ 119 (447)
T 3pvs_A 109 ILFVDEVHRFN 119 (447)
T ss_dssp EEEEETTTCC-
T ss_pred EEEEeChhhhC
Confidence 99999998775
No 284
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.77 E-value=0.0023 Score=64.71 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=59.0
Q ss_pred hHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH---h-hcCCeEEEEeCCCCCCHHHH-------hhcccccC
Q 017792 43 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA---Q-RQGGYCVFIDAEHALDPSLA-------ETIGVKTE 111 (366)
Q Consensus 43 ~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~---~-~~gg~vl~id~e~~~~~~~~-------~~ig~~~~ 111 (366)
+..|...|. .+-....++.|+|+.|.|||||+.+++... . .....++|++.......... ..++.. .
T Consensus 133 l~~L~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~-~ 210 (591)
T 1z6t_A 133 VNAIQQKLS-KLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD-E 210 (591)
T ss_dssp HHHHHHHHT-TSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSS-C
T ss_pred HHHHHHHHh-cccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccc-c
Confidence 345666665 222346799999999999999999987543 1 12245788775443222111 122210 0
Q ss_pred cceecCCCCHHHHHHHHHHHHhcC-CceEEEEeccc
Q 017792 112 NLLLAQPDCGEQALSLVDTLIRSG-SVDVVVVDSVA 146 (366)
Q Consensus 112 ~~~~~~~~~~e~~l~~~~~~~~~~-~~~lvviDsl~ 146 (366)
...-..+.+.+.....+...+... ..-++|+|.+.
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~ 246 (591)
T 1z6t_A 211 SFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW 246 (591)
T ss_dssp CSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC
T ss_pred ccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC
Confidence 011123445667776666655443 56789999884
No 285
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.77 E-value=0.0054 Score=54.43 Aligned_cols=92 Identities=18% Similarity=0.109 Sum_probs=50.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cC----CeEEEEeCCCCCCHHH----Hhhccccc--------Ccceec-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-QG----GYCVFIDAEHALDPSL----AETIGVKT--------ENLLLA- 116 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~g----g~vl~id~e~~~~~~~----~~~ig~~~--------~~~~~~- 116 (366)
+..|+.+.+.|++||||||++..++..... .+ ..+++........... +..++... ..-...
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 152 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILP 152 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccC
Confidence 345789999999999999987766654332 22 2566665432211111 11122111 000000
Q ss_pred -C-----CCCHHHHHHHHHHHHhcCCceEEEEeccccc
Q 017792 117 -Q-----PDCGEQALSLVDTLIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 117 -~-----~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l 148 (366)
. ..|...++..+... -.+++++|+|....+
T Consensus 153 ~~~~~Ivv~Tpg~l~~~l~~~--l~~~~~lVlDEah~~ 188 (235)
T 3llm_A 153 RPHASIMFCTVGVLLRKLEAG--IRGISHVIVDEIHER 188 (235)
T ss_dssp CSSSEEEEEEHHHHHHHHHHC--CTTCCEEEECCTTSC
T ss_pred CCCCeEEEECHHHHHHHHHhh--hcCCcEEEEECCccC
Confidence 0 12556666665542 356899999998753
No 286
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.76 E-value=0.00092 Score=55.85 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.|.|++||||||++..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999987765
No 287
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.75 E-value=0.00093 Score=57.85 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=28.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD 99 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~ 99 (366)
..++.|.|++||||||++..++..+ + ..+++.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~~~~ 54 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDALHP 54 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGGGCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCcCcc
Confidence 4689999999999999999998776 2 35666654443
No 288
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.75 E-value=0.0011 Score=61.19 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.+.++.|+|+|||||||++..++..+. +..++++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEec
Confidence 467999999999999999999976542 23467775
No 289
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.74 E-value=0.00096 Score=61.73 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=27.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ 85 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~ 85 (366)
.-.++.+++|+|++|||||||+..++..+...
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 34567899999999999999999999988764
No 290
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.73 E-value=9.6e-05 Score=66.04 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=27.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeE
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYC 89 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~v 89 (366)
++++|+||||||||||+..+++.+.+..|.+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i 58 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLL 58 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeE
Confidence 5778999999999999999999988877764
No 291
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.73 E-value=0.0017 Score=55.31 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
++.|.|++||||||++..++..+...|-.++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6899999999999999999888765555555444
No 292
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.72 E-value=0.0058 Score=57.67 Aligned_cols=39 Identities=23% Similarity=0.228 Sum_probs=27.9
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
..|...+..|.++ ..+.|+||+|+||||++..++..+..
T Consensus 26 ~~L~~~l~~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 26 TALANGLSLGRIH--HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp HHHHHHHHHTCCC--SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCCC--eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3455555413332 36899999999999999999887753
No 293
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.72 E-value=0.0019 Score=55.99 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=29.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV 90 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl 90 (366)
...+|.++.|.|++||||||++..++..+...+-.+.
T Consensus 6 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 6 DKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp CCBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred hhhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 3457889999999999999999999887765544443
No 294
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.71 E-value=0.0017 Score=60.44 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=32.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEeC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDA 94 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~-~~gg~vl~id~ 94 (366)
+.-+.|+||+|+|||+|+..++..+. ..+..++|+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 57899999999999999999999888 77888888875
No 295
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.71 E-value=0.0035 Score=64.68 Aligned_cols=90 Identities=19% Similarity=0.167 Sum_probs=50.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEeCCCCCC---HHHHhhcccccCcce---------ecCCCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALD---PSLAETIGVKTENLL---------LAQPDC 120 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~--~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~---------~~~~~~ 120 (366)
++++..++|+|++|+|||||+..++..... ..|.+ .++....+ ..+.+.+.+..+... +.....
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V--~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG 83 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV--EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPG 83 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG--GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee--cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCC
Confidence 567899999999999999999999876543 23332 22222211 233444555444322 211111
Q ss_pred HHHHHHHHHHHHhcCCceEEEEeccc
Q 017792 121 GEQALSLVDTLIRSGSVDVVVVDSVA 146 (366)
Q Consensus 121 ~e~~l~~~~~~~~~~~~~lvviDsl~ 146 (366)
-+++...+...++..+..++++|...
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~ 109 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEA 109 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTT
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCc
Confidence 12233334444455677888898543
No 296
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.69 E-value=0.00061 Score=59.31 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
+++|.|++||||||++..++..+...+..+.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 7899999999999999999998876655555443
No 297
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.69 E-value=0.0013 Score=56.30 Aligned_cols=27 Identities=41% Similarity=0.556 Sum_probs=23.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.++|.++.|+|++||||||++..++..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999999988765
No 298
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.69 E-value=0.00069 Score=61.16 Aligned_cols=38 Identities=29% Similarity=0.325 Sum_probs=29.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
.++.++.|+|+|||||||++..++..+. ..+++++++.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~ 67 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDS 67 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHH
Confidence 4567999999999999999999987653 3356777653
No 299
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.68 E-value=0.0019 Score=55.17 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 92 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i 92 (366)
++.|.|++||||||++..++..+...|-.++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 689999999999999999998887666665544
No 300
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.66 E-value=0.0021 Score=61.73 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=40.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIG 107 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig 107 (366)
...+.-+.|+|++|||||||++.++..+...++.++++|...... .+.+.+|
T Consensus 32 ~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~g 83 (392)
T 4ag6_A 32 DRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYK-EMCRKLG 83 (392)
T ss_dssp TBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCSH-HHHHHTT
T ss_pred ccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCHH-HHHHHcC
Confidence 345667899999999999999999998888888888898765433 3344443
No 301
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.66 E-value=0.005 Score=65.37 Aligned_cols=84 Identities=20% Similarity=0.238 Sum_probs=48.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHH-HHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCc
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS-LAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSV 137 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~-~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~ 137 (366)
..+.|+||+|+|||++++.++..+...+...++++........ ..+-+|..+..+-.. ....+. ..+.....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~---~~g~l~----~~~~~~~~ 661 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYE---EGGQLT----EAVRRRPY 661 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-----------------CHH----HHHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCcc---ccchHH----HHHHhCCC
Confidence 3788999999999999999999887666778888876544321 122223221111000 011122 22223446
Q ss_pred eEEEEecccccC
Q 017792 138 DVVVVDSVAALV 149 (366)
Q Consensus 138 ~lvviDsl~~l~ 149 (366)
.++++|.+..+.
T Consensus 662 ~vl~lDEi~~l~ 673 (854)
T 1qvr_A 662 SVILFDEIEKAH 673 (854)
T ss_dssp EEEEESSGGGSC
T ss_pred eEEEEecccccC
Confidence 799999997664
No 302
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.64 E-value=0.0059 Score=61.43 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=56.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH----HHhhcCCeEEEEeCCCCC--CH-----HHHhhcccccC--cceecCCCCHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIA----EAQRQGGYCVFIDAEHAL--DP-----SLAETIGVKTE--NLLLAQPDCGEQ 123 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~----~~~~~gg~vl~id~e~~~--~~-----~~~~~ig~~~~--~~~~~~~~~~e~ 123 (366)
...++.|+|..|.||||||.+++. .....-..++|++..... +. .+...++.... .+.-....+.++
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 230 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV 230 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHH
Confidence 457999999999999999999985 233222457888765543 21 23444543321 111112234556
Q ss_pred HHHHHHHHHhcCCceEEEEecccc
Q 017792 124 ALSLVDTLIRSGSVDVVVVDSVAA 147 (366)
Q Consensus 124 ~l~~~~~~~~~~~~~lvviDsl~~ 147 (366)
+...+...+...+.-++|+|.+..
T Consensus 231 l~~~l~~~L~~~kr~LlVLDdv~~ 254 (549)
T 2a5y_B 231 LKRMICNALIDRPNTLFVFDDVVQ 254 (549)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEECC
T ss_pred HHHHHHHHHcCCCcEEEEEECCCC
Confidence 667777666554367999998865
No 303
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.62 E-value=0.0044 Score=57.50 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 98 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~ 98 (366)
.+.-+.|+|++|+|||+++..+.......+...++++.....
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~ 65 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN 65 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC
Confidence 445688999999999999999988776666777888775443
No 304
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.62 E-value=0.0014 Score=56.00 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.++.|.|++||||||++..++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999999997765
No 305
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=96.59 E-value=0.0015 Score=63.90 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=44.9
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC----eEEEEe
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG----YCVFID 93 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg----~vl~id 93 (366)
.+.+.||+..+|.++. +-+|+-..|+|++|+|||+|+.+++......+. .|+|.-
T Consensus 132 ~e~l~TGiraID~l~p---igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~ 190 (465)
T 3vr4_D 132 DEFIQTGISAIDHLNT---LVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAA 190 (465)
T ss_dssp CCBCBCSCHHHHTTSC---CBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEE
T ss_pred ccccccCceEEecccc---cccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEE
Confidence 4578999999999998 889999999999999999999888776654323 566653
No 306
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.58 E-value=0.0015 Score=57.77 Aligned_cols=40 Identities=30% Similarity=0.416 Sum_probs=26.0
Q ss_pred cccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
-+|.|...-+ .-+++..++.|+|||||||+|.|..++..+
T Consensus 14 ~~p~~~~~~~-----~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 14 LVPRGSHMTD-----QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp ---------------CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCCCccccc-----hhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455554433 345688899999999999999999998766
No 307
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.58 E-value=0.013 Score=54.71 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=40.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCce
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 138 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~ 138 (366)
..+.|+||+|+|||+|+..++..+ +...+.++..... ...++...+. ......
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~---------------------~~~~~~~~~~---~~~~~~ 108 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIE---------------------KSGDLAAILT---NLSEGD 108 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCC---------------------SHHHHHHHHH---TCCTTC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhcc---------------------chhHHHHHHH---hccCCC
Confidence 358999999999999999996654 4445555532111 1222222222 234568
Q ss_pred EEEEecccccC
Q 017792 139 VVVVDSVAALV 149 (366)
Q Consensus 139 lvviDsl~~l~ 149 (366)
+++||.+..+.
T Consensus 109 vl~lDEi~~l~ 119 (338)
T 3pfi_A 109 ILFIDEIHRLS 119 (338)
T ss_dssp EEEEETGGGCC
T ss_pred EEEEechhhcC
Confidence 99999998775
No 308
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.58 E-value=0.0013 Score=55.41 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=24.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.++.|.|+|||||||++..++.. ..+ ..+++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~-~~~i~~ 34 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPG-FYNINR 34 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STT-EEEECH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCC-cEEecH
Confidence 47899999999999999998762 122 456664
No 309
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.58 E-value=0.0015 Score=55.30 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.++.++.|.|++||||||++..++..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999987665
No 310
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.58 E-value=0.0016 Score=55.38 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.++.|+|++||||||++..++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 311
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.56 E-value=0.022 Score=53.38 Aligned_cols=98 Identities=14% Similarity=0.057 Sum_probs=51.7
Q ss_pred HHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhc--ccccCcceecC-----
Q 017792 45 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETI--GVKTENLLLAQ----- 117 (366)
Q Consensus 45 ~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~i--g~~~~~~~~~~----- 117 (366)
.|-..+..|-++ ..+.++||+|+|||++++.++..+...... +.+.-....-.+.+ +..++ +....
T Consensus 13 ~l~~~i~~~~~~--~a~L~~G~~G~GKt~~a~~la~~l~~~~~~----~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 85 (334)
T 1a5t_A 13 KLVASYQAGRGH--HALLIQALPGMGDDALIYALSRYLLCQQPQ----GHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGK 85 (334)
T ss_dssp HHHHHHHTTCCC--SEEEEECCTTSCHHHHHHHHHHHHTCSSCB----TTBCCSCSHHHHHHHHTCCTT-EEEECCCTTC
T ss_pred HHHHHHHcCCcc--eeEEEECCCCchHHHHHHHHHHHHhCCCCC----CCCCCCCCHHHHHHhcCCCCC-EEEEeccccC
Confidence 444444313333 359999999999999999999887533211 00000010111111 11121 22222
Q ss_pred -CCCHHHHHHHHHHHHh---cCCceEEEEecccccC
Q 017792 118 -PDCGEQALSLVDTLIR---SGSVDVVVVDSVAALV 149 (366)
Q Consensus 118 -~~~~e~~l~~~~~~~~---~~~~~lvviDsl~~l~ 149 (366)
...++++.+.+..+.. .+..++++||.+..+.
T Consensus 86 ~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~ 121 (334)
T 1a5t_A 86 NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT 121 (334)
T ss_dssp SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC
T ss_pred CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC
Confidence 2345665555444322 2457899999998775
No 312
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.56 E-value=0.0013 Score=61.81 Aligned_cols=24 Identities=42% Similarity=0.472 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.+.|+||||+|||||++.+++.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 579999999999999999999887
No 313
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.56 E-value=0.0014 Score=55.75 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.++.|.|++||||||++..++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987655
No 314
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.55 E-value=0.0012 Score=54.99 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=18.4
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHV 78 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l 78 (366)
.++.|.|++||||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999988
No 315
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.52 E-value=0.0011 Score=60.08 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=25.6
Q ss_pred cCC---CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 55 LPK---GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 55 i~~---G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.+ |+++.|+|++||||||+++.++..+
T Consensus 42 i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 42 VKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp THHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 567 9999999999999999999998866
No 316
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.51 E-value=0.0048 Score=64.54 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=30.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
.+.|+||+|+|||++++.++..+...+..+++++..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s 558 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMS 558 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEech
Confidence 589999999999999999999886666778888753
No 317
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.51 E-value=0.0016 Score=58.92 Aligned_cols=23 Identities=43% Similarity=0.774 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.|+||||||||||+..++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 78999999999999999998765
No 318
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.50 E-value=0.0014 Score=56.84 Aligned_cols=21 Identities=38% Similarity=0.412 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
+++|.|++||||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 319
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.49 E-value=0.0012 Score=56.73 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.+.++.|.|++||||||++..++..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998765
No 320
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=96.47 E-value=0.005 Score=61.62 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=44.5
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
.+.+.||+..+|.++. +-+|+-.+|+|++|+|||+|+.+++... ...-++|..
T Consensus 213 ~epl~TGirvID~l~P---igrGqr~~Ifgg~g~GKT~L~~~ia~~~--~~~v~V~~~ 265 (600)
T 3vr4_A 213 DVPMITGQRVIDTFFP---VTKGGAAAVPGPFGAGKTVVQHQIAKWS--DVDLVVYVG 265 (600)
T ss_dssp CSBCCCCCHHHHHHSC---CBTTCEEEEECCTTSCHHHHHHHHHHHS--SCSEEEEEE
T ss_pred CceecccchhhhccCC---ccCCCEEeeecCCCccHHHHHHHHHhcc--CCCEEEEEE
Confidence 5688999999999998 8899999999999999999999887653 234566654
No 321
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.46 E-value=0.0015 Score=56.42 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
+++|.|++||||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 322
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=96.44 E-value=0.0091 Score=53.64 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=35.0
Q ss_pred CCCEEEEE-cCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 57 KGRVVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 57 ~G~ii~I~-G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
.+.++.|+ +..|+||||++..++..+...|.+|+++|.+..
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 45678887 568999999999999999988889999998753
No 323
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.43 E-value=0.0021 Score=55.29 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+|.++.|.|++||||||++..++..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999987765
No 324
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.42 E-value=0.014 Score=53.92 Aligned_cols=66 Identities=20% Similarity=0.239 Sum_probs=42.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCc
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSV 137 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~ 137 (366)
...+.|+||+|+|||+|+..++..+ +..+++++...... ..++...+.. .....
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~---------------------~~~l~~~l~~--~~~~~ 91 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEK---------------------PGDLAAILAN--SLEEG 91 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCS---------------------HHHHHHHHTT--TCCTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCC---------------------hHHHHHHHHH--hccCC
Confidence 3568899999999999999998766 34566665432211 1222222211 01356
Q ss_pred eEEEEecccccC
Q 017792 138 DVVVVDSVAALV 149 (366)
Q Consensus 138 ~lvviDsl~~l~ 149 (366)
.++++|.+..+.
T Consensus 92 ~~l~lDEi~~l~ 103 (324)
T 1hqc_A 92 DILFIDEIHRLS 103 (324)
T ss_dssp CEEEETTTTSCC
T ss_pred CEEEEECCcccc
Confidence 799999998765
No 325
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.42 E-value=0.0015 Score=60.47 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 98 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~ 98 (366)
++-+++|.|++||||||++..++..+...+..+.+++.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 456899999999999999999988765445556778766543
No 326
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.41 E-value=0.0017 Score=57.26 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=22.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+..++.++.|.|++||||||++..++..+
T Consensus 3 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 3 ASARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp ----CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34567899999999999999999987654
No 327
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.40 E-value=0.0024 Score=55.12 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+.++.|.|++||||||++..++..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 328
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.38 E-value=0.024 Score=56.64 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
...++.++|.|||||||++..++..+...+-.+..++.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~ 71 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNV 71 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecc
Confidence 34689999999999999999999877555544555553
No 329
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.38 E-value=0.0024 Score=55.98 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|.++.|.|++||||||++..++..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998765
No 330
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.37 E-value=0.0029 Score=59.78 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=27.9
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
.|..+|..+.|+||||+|||+|++.++..+..
T Consensus 65 ~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 65 EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46666889999999999999999999988753
No 331
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.37 E-value=0.002 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.|.|+|||||||++..++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998765
No 332
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.36 E-value=0.0014 Score=55.52 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=18.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.++.|.|++||||||++..++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56799999999999999999987654
No 333
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.35 E-value=0.0041 Score=55.78 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
+.-++.+.|.+|+|||||+..++..+. .+.+++.++.+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTG 52 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSS
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 446899999999999999999999988 8888999987643
No 334
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.34 E-value=0.018 Score=54.17 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=39.9
Q ss_pred HHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 45 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 45 ~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
.|+.++. . +.-.++.+.|..|+||||++..++..+...|.+|+.+|.+.
T Consensus 6 ~l~~~l~-~--~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 6 TLQSILD-Q--RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp SSHHHHH-C--TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred cHHHHhc-C--CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3455565 2 22468889999999999999999999998899999999873
No 335
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.33 E-value=0.00094 Score=57.77 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=24.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+++|..++|+|+||+|||||++.+++..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999999998886543
No 336
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.33 E-value=0.0024 Score=54.83 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.|.|++||||||++..++..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998766
No 337
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.31 E-value=0.0041 Score=54.74 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=31.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
.+|.++.|.|++||||||++..++..+...+-.++...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 46889999999999999999999988877666665443
No 338
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.31 E-value=0.0023 Score=62.42 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=25.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
+++|++++|+||||||||||+..++..+..
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 446889999999999999999999887654
No 339
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=96.31 E-value=0.03 Score=53.33 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=35.3
Q ss_pred CCCCEEEEEc-CCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 56 PKGRVVEIYG-PEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 56 ~~G~ii~I~G-~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
.+++++.|++ ..|+||||++..++..+...|.+|+++|.+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3567888886 799999999999999999888899999987
No 340
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=96.30 E-value=0.002 Score=62.98 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=40.9
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
.+.+.||+..+|.++. +-+|+-..|+|++|+|||+|+.+++.....
T Consensus 128 ~e~l~TGiraID~l~p---igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 128 EQFIQTGISTIDVMNT---LVRGQKLPIFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp CCBCBCSCHHHHTTSC---CBTTCBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred cccccCcceeeecccc---cccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 5678999999999998 889999999999999999999888776543
No 341
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.29 E-value=0.003 Score=56.84 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=28.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAE 95 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e 95 (366)
-+++|.|++||||||++..++..+... +..+++++.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D 64 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD 64 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecC
Confidence 589999999999999999988765321 3345666654
No 342
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.27 E-value=0.025 Score=50.38 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=33.3
Q ss_pred CCEEEEEc-CCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 58 GRVVEIYG-PEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 58 G~ii~I~G-~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
++++.|++ ..|+||||++..++..+...|.+|+++|.+.
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 35666755 5889999999999999998888999999875
No 343
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.27 E-value=0.0021 Score=65.56 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=32.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
+..|+.+.|+||||+|||||++.+++.+.+.....+++...
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 45678999999999999999999999887665444555443
No 344
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.26 E-value=0.0032 Score=56.00 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=24.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
..++|.++.|.|++||||||++..++..+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45788999999999999999999887755
No 345
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.26 E-value=0.0029 Score=52.31 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+++|+|||||||||++..+...+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999988877544
No 346
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=96.26 E-value=0.0028 Score=62.20 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=45.3
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----CCeEEEEe
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFID 93 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~----gg~vl~id 93 (366)
.+.+.||+..+|.++. +-+|+-++|+|++|+|||+|+.+++...... +..|+|.-
T Consensus 133 ~e~l~TGir~ID~l~p---igrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~ 191 (469)
T 2c61_A 133 KDFIQTGISTIDGTNT---LVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAA 191 (469)
T ss_dssp CSBCBCSCHHHHTTSC---CBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEE
T ss_pred ccccceeeEeeeeeec---cccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEE
Confidence 4678999999999998 8899999999999999999999888876532 12456643
No 347
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.26 E-value=0.0026 Score=60.58 Aligned_cols=26 Identities=38% Similarity=0.649 Sum_probs=23.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
+++| +++|+|||||||||++..+...
T Consensus 24 ~~~g-~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 24 FPEG-VTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred EcCC-eEEEECCCCCChhHHHHHHHHh
Confidence 5578 9999999999999999988864
No 348
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.26 E-value=0.0042 Score=58.97 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=34.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
...+++|+|++|+|||||+..++..+...+.+|..++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 3458999999999999999999999887788888888763
No 349
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.26 E-value=0.022 Score=59.50 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=47.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH-HHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCce
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-SLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 138 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~-~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~ 138 (366)
.+.|+||+|+|||++++.++..+ +..++.++.....+. ...+.+|..+. ....+.-..+...++.....
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~~~~~~l~g~~~g-------~~g~~~~~~l~~~~~~~~~~ 559 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPG-------YVGFDQGGLLTDAVIKHPHA 559 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCCCSC-------SHHHHHTTHHHHHHHHCSSE
T ss_pred EEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcchhhHhhhcCCCCC-------CcCccccchHHHHHHhCCCc
Confidence 68899999999999999998877 456777775433221 11122232211 11111111122333445578
Q ss_pred EEEEecccccC
Q 017792 139 VVVVDSVAALV 149 (366)
Q Consensus 139 lvviDsl~~l~ 149 (366)
++++|.+..+.
T Consensus 560 vl~lDEi~~~~ 570 (758)
T 1r6b_X 560 VLLLDEIEKAH 570 (758)
T ss_dssp EEEEETGGGSC
T ss_pred EEEEeCccccC
Confidence 99999998764
No 350
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.25 E-value=0.0028 Score=55.70 Aligned_cols=26 Identities=31% Similarity=0.201 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.++.|.|++||||||++..++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 351
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.24 E-value=0.014 Score=61.86 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=41.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh-------cCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHH-HHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQR-------QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALS-LVDTL 131 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~-------~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~-~~~~~ 131 (366)
-+.|+||||+|||+++..++..+.. .+..+++++...... |.. +. ...++.+. .+...
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------g~~------~~-g~~~~~l~~~~~~~ 258 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------GAK------YR-GEFEERLKAVIQEV 258 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------CHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------cCc------cc-hHHHHHHHHHHHHH
Confidence 4789999999999999999998754 245667766432111 000 00 11223222 23333
Q ss_pred HhcCCceEEEEecccccCC
Q 017792 132 IRSGSVDVVVVDSVAALVP 150 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~~ 150 (366)
.......+++||.+..+.+
T Consensus 259 ~~~~~~~iL~IDEi~~l~~ 277 (854)
T 1qvr_A 259 VQSQGEVILFIDELHTVVG 277 (854)
T ss_dssp HTTCSSEEEEECCC-----
T ss_pred HhcCCCeEEEEecHHHHhc
Confidence 2333567999999998874
No 352
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.24 E-value=0.012 Score=59.15 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=29.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhc----CCeEEEEeCCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFIDAEH 96 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~----gg~vl~id~e~ 96 (366)
+--++|+|.+|||||++++.++..+... .-.++.+|...
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 3468999999999999999988876532 23566677653
No 353
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.24 E-value=0.0023 Score=59.92 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+++|.|++|||||||++++++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 589999999999999999998865
No 354
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.23 E-value=0.0027 Score=53.90 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.++.|.|++||||||++..++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997765
No 355
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=96.22 E-value=0.0051 Score=61.33 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=44.8
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
..+.+.||+..+|.++. +-+|+-.+|+|++|+|||+|+.+++... ...-++|..
T Consensus 201 ~~epl~TGirvID~l~P---igrGqr~~Ifg~~g~GKT~l~~~ia~~~--~~~v~V~~~ 254 (578)
T 3gqb_A 201 PNTPFLTGMRILDVLFP---VAMGGTAAIPGPFGSGKSVTQQSLAKWS--NADVVVYVG 254 (578)
T ss_dssp SCSEECCSCHHHHTTSC---EETTCEEEECCCTTSCHHHHHHHHHHHS--SCSEEEEEE
T ss_pred CCCcccccchhhhhccc---ccCCCEEeeeCCCCccHHHHHHHHHhcc--CCCEEEEEE
Confidence 35788999999999998 8899999999999999999999887653 234566654
No 356
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.21 E-value=0.0026 Score=64.02 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
+|.+++|+||||+|||||++.++..+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 789999999999999999999988774
No 357
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.19 E-value=0.0032 Score=55.19 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+|..+.|.|++||||||++..++..+
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998766
No 358
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.15 E-value=0.024 Score=52.67 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=29.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
.++.|+|++|+|||||+.+++..+. ..++|++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN---LPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT---CCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC---CCEEEEEchh
Confidence 5999999999999999999987763 3468888653
No 359
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.14 E-value=0.0039 Score=56.28 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
+.-+.|+|++|+|||++++.++......+..+++++....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 3568899999999999999998877665667888876543
No 360
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.13 E-value=0.0035 Score=54.87 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=24.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
++.|.|||||||+|.|..++..+ .+.++++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHH
Confidence 57899999999999999998766 24567653
No 361
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.13 E-value=0.003 Score=54.41 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.++|+||+|+|||||+..++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999887664
No 362
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.12 E-value=0.0063 Score=54.43 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=30.6
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCe-EEEE
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY-CVFI 92 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~-vl~i 92 (366)
+.-.+|.++.|.|++||||||++..++..+...+-. +++.
T Consensus 22 ~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 22 SNAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp ----CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 445568899999999999999999999888776666 4444
No 363
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.12 E-value=0.0018 Score=60.21 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHH-HhhcCC
Q 017792 61 VEIYGPEASGKTTLALHVIAE-AQRQGG 87 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~-~~~~gg 87 (366)
++|+|+||+|||||++.+++. ..+..+
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~~~g 48 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYPERV 48 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC--------
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence 489999999999999998875 544444
No 364
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.12 E-value=0.0039 Score=52.08 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+++.|.|++||||||++..++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999987765
No 365
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.12 E-value=0.025 Score=52.43 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=43.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh-
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR- 133 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~---gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~- 133 (366)
...+.++||+|+||||++..++..+... ...+++++.+. ....++++.+.+.....
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~--------------------~~~~id~ir~li~~~~~~ 77 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG--------------------ENIGIDDIRTIKDFLNYS 77 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS--------------------SCBCHHHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc--------------------CCCCHHHHHHHHHHHhhc
Confidence 3489999999999999999998753211 11233333211 01234444444433321
Q ss_pred --cCCceEEEEecccccC
Q 017792 134 --SGSVDVVVVDSVAALV 149 (366)
Q Consensus 134 --~~~~~lvviDsl~~l~ 149 (366)
.+..++++||.+..+.
T Consensus 78 p~~~~~kvviIdead~lt 95 (305)
T 2gno_A 78 PELYTRKYVIVHDCERMT 95 (305)
T ss_dssp CSSSSSEEEEETTGGGBC
T ss_pred cccCCceEEEeccHHHhC
Confidence 2357899999998875
No 366
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.10 E-value=0.0037 Score=54.46 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+.|.|++||||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987765
No 367
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.10 E-value=0.0034 Score=54.15 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
..++.|.|++||||||++..++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999887654
No 368
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.10 E-value=0.0037 Score=53.06 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
..++.|.|++||||||++..++..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999987755
No 369
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.09 E-value=0.0037 Score=55.84 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.-++.|.||+||||||++..++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998766
No 370
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.04 E-value=0.0043 Score=55.59 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=23.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.++.++.|.|++||||||++..++..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 366789999999999999999998665
No 371
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.04 E-value=0.0038 Score=52.16 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.++.|.|++||||||++..++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999997765
No 372
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.03 E-value=0.0052 Score=54.65 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=29.0
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----CCeEEEEe
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFID 93 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~----gg~vl~id 93 (366)
|-..+|.++.|.|++||||||++..++..+... +-.+++..
T Consensus 20 ~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 20 GSMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp ---CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 345689999999999999999999999888765 66665443
No 373
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.01 E-value=0.0079 Score=52.91 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEE
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFI 92 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg-~vl~i 92 (366)
+|.++.|.|++||||||.+..++..+...+. .+++.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 4789999999999999999999988877665 44443
No 374
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.99 E-value=0.0039 Score=53.32 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
.++|+|+||+|||||++.+++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999987653
No 375
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.95 E-value=0.0045 Score=54.10 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
++.+++|.|++||||||++..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998865
No 376
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.95 E-value=0.007 Score=55.45 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=27.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
.-+.|+||||+|||++++.++..+ +..+++++..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~ 84 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEAT 84 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcch
Confidence 458899999999999999998876 3456777653
No 377
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.95 E-value=0.0044 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
..+++|.|++||||||++..++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999988663
No 378
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.92 E-value=0.0043 Score=54.12 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+.|.|++||||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987654
No 379
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.92 E-value=0.0076 Score=54.86 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=29.5
Q ss_pred HHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 46 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 46 LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
|...|. |..|+...+.|+||||+|||+|+..++..+.
T Consensus 93 l~~~l~-~~~~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 93 FLGWAT-KKFGKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp HHHHHT-TCSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred HHHHHh-CCCCCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 455566 5557777899999999999999998887653
No 380
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.91 E-value=0.0043 Score=53.25 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.++|+|++|+|||||+..+++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 381
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.89 E-value=0.0055 Score=50.95 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.|.|++||||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999987755
No 382
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=95.84 E-value=0.17 Score=40.01 Aligned_cols=86 Identities=21% Similarity=0.220 Sum_probs=71.4
Q ss_pred CCEEEEE-cCCCCcHHHHHHHHHHHHhh--cCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 58 GRVVEIY-GPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 58 G~ii~I~-G~~GsGKTTL~~~l~~~~~~--~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+.+++|. -.+|.|=..|+.-++..+.. .++.++||..............|++++++.+.++.+..+.++.+++.++.
T Consensus 2 ~~l~Ell~~~~g~~e~~lLlp~L~~l~~~~~~r~ilwi~pp~~~~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrs 81 (119)
T 1ofu_X 2 AAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRL 81 (119)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHH
T ss_pred CceEEEeecCCCccHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhc
Confidence 3466664 45788877777777777765 67899999988777888888999999999999999999999999999999
Q ss_pred CCceEEEEe
Q 017792 135 GSVDVVVVD 143 (366)
Q Consensus 135 ~~~~lvviD 143 (366)
+....|+..
T Consensus 82 g~~~aVl~w 90 (119)
T 1ofu_X 82 GRSHTVVSW 90 (119)
T ss_dssp TCEEEEEEC
T ss_pred CCccEEEEC
Confidence 988887764
No 383
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.81 E-value=0.0029 Score=57.10 Aligned_cols=75 Identities=23% Similarity=0.356 Sum_probs=43.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
.++| +.|+||||+|||+|+..++..+. ..+++++....... ..|... .....++..+. .
T Consensus 43 ~~~~--vll~G~~GtGKT~la~~la~~~~---~~~~~v~~~~~~~~----~~~~~~--------~~~~~~~~~a~----~ 101 (268)
T 2r62_A 43 IPKG--VLLVGPPGTGKTLLAKAVAGEAH---VPFFSMGGSSFIEM----FVGLGA--------SRVRDLFETAK----K 101 (268)
T ss_dssp CCSC--CCCBCSSCSSHHHHHHHHHHHHT---CCCCCCCSCTTTTS----CSSSCS--------SSSSTTHHHHH----H
T ss_pred CCce--EEEECCCCCcHHHHHHHHHHHhC---CCEEEechHHHHHh----hcchHH--------HHHHHHHHHHH----h
Confidence 4444 78999999999999999988763 33344443221110 011111 11112222222 2
Q ss_pred CCceEEEEecccccCC
Q 017792 135 GSVDVVVVDSVAALVP 150 (366)
Q Consensus 135 ~~~~lvviDsl~~l~~ 150 (366)
..+.++++|.+..+.+
T Consensus 102 ~~~~vl~iDEid~l~~ 117 (268)
T 2r62_A 102 QAPSIIFIDEIDAIGK 117 (268)
T ss_dssp SCSCEEEESCGGGTTC
T ss_pred cCCeEEEEeChhhhcc
Confidence 3578999999988864
No 384
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.77 E-value=0.0064 Score=52.35 Aligned_cols=23 Identities=48% Similarity=0.664 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.|.|++||||||++..++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999997765
No 385
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.77 E-value=0.0073 Score=53.49 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++..+.|.|++||||||++..++..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998776
No 386
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.77 E-value=0.0078 Score=53.36 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAE 95 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e 95 (366)
.+|.++.|.|++||||||++..++..+.. .+-.++++..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre 59 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE 59 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC
Confidence 36889999999999999999999998877 66666653434
No 387
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.76 E-value=0.0089 Score=56.38 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+++|+||+|||||||+..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999998765
No 388
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.72 E-value=0.0068 Score=52.76 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+++|+|||||||||++..+...+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 499999999999999988776554
No 389
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=95.72 E-value=0.0048 Score=62.60 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCCCceEeccCC-CCC---CCCCcccCCh-----------------HHHHHhhCCC-CcCCCCEEEE
Q 017792 6 LALQQALDQITSSFGKGSIMWLGRS-VTP---RHVPVVSTGS-----------------FALDIALGTG-GLPKGRVVEI 63 (366)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~-~~~---~~~~~i~TG~-----------------~~LD~~L~~G-Gi~~G~ii~I 63 (366)
+...+++++|+..|+.-.+..+--. ... .....+.+++ +.||.+++ + +-....++.+
T Consensus 254 ~~~~~~l~~~~~~~~~~~i~~vPl~~~e~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 332 (589)
T 1ihu_A 254 EREQEALANLPADLAGLPTDTLFLQPVNMVGVSALSRLLSTQPVASPSSDEYLQQRPDIPSLSALVD-DIARNEHGLIML 332 (589)
T ss_dssp HHHHHHHHTCCHHHHTSCEEEEECCSSCCCSHHHHHHTTCSCC-----------CCCCCCCHHHHHH-HHHTTSCEEEEE
T ss_pred HHHHHHHHHHHHhccCCCEEEecCCCCCCCCHHHHHHHHhhhhccccccccccccccccchhhhhhh-hhhccCCeEEEE
Confidence 3455666777777765543322100 011 1133445555 56777665 3 2233457777
Q ss_pred EcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 64 ~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
.|.+|+||||++..++..+...|.+++++|.+..
T Consensus 333 ~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~ 366 (589)
T 1ihu_A 333 MGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 366 (589)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred ecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 8999999999999999999988989999998743
No 390
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.71 E-value=0.0068 Score=53.41 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.|.|++||||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 391
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.71 E-value=0.0049 Score=53.64 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.|..++|.||+|+|||||+..++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3677999999999999999888654
No 392
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.69 E-value=0.0096 Score=53.64 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=33.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
++.|.|..|+||||++..++..+...|.+|+++|.+..
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 56778999999999999999999988889999998743
No 393
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.65 E-value=0.0073 Score=57.25 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=23.8
Q ss_pred CCCCE--EEEEcCCCCcHHHHHHHHHHHHh
Q 017792 56 PKGRV--VEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 56 ~~G~i--i~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
++|++ +.|+|++||||||+++.++..+.
T Consensus 20 ~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 20 EDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 45555 99999999999999999988764
No 394
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.62 E-value=0.065 Score=55.88 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhc-------CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQ-------GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-------gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
.+.-+.|+||+|+|||+++..++..+... +..++.++...... +. ......++.+..+.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~-------~~-------~~~g~~e~~l~~~~ 271 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA-------GT-------KYRGDFEKRFKALL 271 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C-------CC-------CCSSCHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc-------cc-------cccchHHHHHHHHH
Confidence 45678999999999999999999877542 22222222111000 00 01123444444443
Q ss_pred HHHhcCCceEEEEecccccCC
Q 017792 130 TLIRSGSVDVVVVDSVAALVP 150 (366)
Q Consensus 130 ~~~~~~~~~lvviDsl~~l~~ 150 (366)
..+......+++||.+..+.+
T Consensus 272 ~~~~~~~~~iL~IDEi~~l~~ 292 (758)
T 1r6b_X 272 KQLEQDTNSILFIDEIHTIIG 292 (758)
T ss_dssp HHHSSSSCEEEEETTTTTTTT
T ss_pred HHHHhcCCeEEEEechHHHhh
Confidence 444444568999999998874
No 395
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.61 E-value=0.0077 Score=58.01 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=26.1
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
|=+++|..++|+|+||+|||||++.+++
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 5688899999999999999999999988
No 396
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.61 E-value=0.0086 Score=58.80 Aligned_cols=40 Identities=30% Similarity=0.324 Sum_probs=30.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
|..++.-+.|+||||+|||+|++.++..+... ...++++.
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~-~~~~~~~~ 98 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSK-VPFCPMVG 98 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT-SCEEEEEG
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC-ceEEEEeH
Confidence 55555668999999999999999998886432 44555554
No 397
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.58 E-value=0.013 Score=50.87 Aligned_cols=37 Identities=24% Similarity=0.158 Sum_probs=29.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
..+.|+|++|+|||||+..++...... .++..++.+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~ 67 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDV 67 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCC
Confidence 478999999999999999999876544 4566666543
No 398
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.57 E-value=0.008 Score=52.39 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+.|.|++||||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 399
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.56 E-value=0.011 Score=56.06 Aligned_cols=35 Identities=29% Similarity=0.250 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
++.-+.|+||||+|||++++.++..+ +...+.++.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 45568999999999999999998776 445555543
No 400
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.56 E-value=0.1 Score=51.22 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 92 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i 92 (366)
..++.++|.+||||||++..++..+....-.+..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~ 73 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREF 73 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEE
Confidence 45899999999999999999988765443333333
No 401
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.54 E-value=0.0087 Score=61.45 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
...+..|.||||+|||+++.+++..+...+.+++....-
T Consensus 204 ~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 456999999999999999999998888888887776654
No 402
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.53 E-value=0.022 Score=55.79 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
.++|+|++|+|||||+..+++
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEE
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 799999999999999988854
No 403
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.53 E-value=0.0063 Score=51.01 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
+|..++|+|++|+|||||+..++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999988653
No 404
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.49 E-value=0.014 Score=50.89 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 92 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i 92 (366)
|.++.|-|..||||||++..++..+. .+..+++.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~ 35 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT 35 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence 56899999999999999999988775 35565554
No 405
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.48 E-value=0.0096 Score=51.44 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
...+++|+|++||||||++..++..+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999987753
No 406
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.47 E-value=0.016 Score=51.16 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=34.8
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCC
Q 017792 57 KGRVVEIYGP-EASGKTTLALHVIAEAQRQ-GGYCVFIDAEHA 97 (366)
Q Consensus 57 ~G~ii~I~G~-~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~ 97 (366)
.++++.+++. .|+||||++..++..+... |.+|+++|.+..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 4567777754 8999999999999999988 899999998754
No 407
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.47 E-value=0.012 Score=56.03 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
....+.|+||+|+|||++++.++..+ +..++.++.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~ 105 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDA 105 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecc
Confidence 44568899999999999999998766 455666664
No 408
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=95.46 E-value=0.044 Score=52.34 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=33.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.++.+.|..|+||||++..++..+...|.+|+++|.
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 477889999999999999999999988999999998
No 409
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.45 E-value=0.05 Score=58.56 Aligned_cols=42 Identities=26% Similarity=0.224 Sum_probs=32.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH--h-hcCCeEEEEeCCCCCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA--Q-RQGGYCVFIDAEHALD 99 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~--~-~~gg~vl~id~e~~~~ 99 (366)
..++.|+|+.|.|||||+.+++... . .....++|++.....+
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d 194 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC
Confidence 5799999999999999999998532 2 2344588988766554
No 410
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.45 E-value=0.021 Score=52.04 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=36.1
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 57 KGRVVEIYGP-EASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 57 ~G~ii~I~G~-~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
+..++.|+++ +|+||||++..++..+...|.+|++||.+..
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4578989876 8999999999999999988899999998743
No 411
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.44 E-value=0.014 Score=53.40 Aligned_cols=39 Identities=23% Similarity=0.410 Sum_probs=34.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
.++.|.|..|+||||++..++..+...|.+|+.+|.+..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 367778999999999999999999988889999998754
No 412
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.40 E-value=0.0087 Score=58.77 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEeC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDA 94 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg-~vl~id~ 94 (366)
.+.|.|++||||||++..++..+...+. .++.+..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 9999999999999999999998887765 5666654
No 413
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.40 E-value=0.0088 Score=56.30 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.++.++.|+||+|||||||+..++..+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 456799999999999999999886644
No 414
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.40 E-value=0.016 Score=54.04 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=37.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
+..-++++|+|.-|.||||++..++..+...|.+|+.+|.+.
T Consensus 45 i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 45 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 86 (314)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 556689999999999999999999999999999999999874
No 415
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.38 E-value=0.02 Score=52.92 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=36.1
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 57 KGRVVEIYGP-EASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 57 ~G~ii~I~G~-~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
++.++.|+++ +|+||||++..++..+...|.+|++||.+..
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r 144 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 144 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4578989887 7999999999999999988889999998753
No 416
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.36 E-value=0.025 Score=53.50 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=40.2
Q ss_pred HHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEeCC
Q 017792 45 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAE 95 (366)
Q Consensus 45 ~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~~gg~vl~id~e 95 (366)
.|+.++. . +.-+++.+.|..|+||||++..++..+. ..|.+|+.+|.+
T Consensus 8 ~L~~~l~-~--~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 8 TLESIVQ-H--DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp SSHHHHT-C--TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred hHHHHhc-C--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4566666 2 2337999999999999999999999998 788899999997
No 417
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.31 E-value=0.015 Score=50.60 Aligned_cols=123 Identities=13% Similarity=0.070 Sum_probs=59.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeC-CCCCCHHHHhhcccccCcceecCC-CCHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDA-EHALDPSLAETIGVKTENLLLAQP-DCGEQALSLVDTL 131 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~-e~~~~~~~~~~ig~~~~~~~~~~~-~~~e~~l~~~~~~ 131 (366)
-++.|.|+||||||+++..++.... ..|.+.+|+.. ++...... ............... ...+.+.+.+.
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~-~~~~~k~~~~~~~~~~~~~~~~~~~~~-- 82 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHT-YIETDAKKLPKSTDEQLSAHDMYEWIK-- 82 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCE-EEECCTTTCSSCCSSCEEGGGHHHHTT--
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcccccc-ccchhhhhccccCcccccHHHHHHHhh--
Confidence 4899999999999999887755543 33414455443 22111000 000000000000000 01122222210
Q ss_pred HhcCCceEEEEecccccCCCC-ccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccc
Q 017792 132 IRSGSVDVVVVDSVAALVPKG-ELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 198 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~~~~-~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~ 198 (366)
...+...+++||....+++.. +.. +.. | .+..+. .-++.+..||+++|..+.+
T Consensus 83 ~~~~~~~vliIDEAq~l~~~~~~~~----e~~-----r----ll~~l~-~~r~~~~~iil~tq~~~~l 136 (199)
T 2r2a_A 83 KPENIGSIVIVDEAQDVWPARSAGS----KIP-----E----NVQWLN-THRHQGIDIFVLTQGPKLL 136 (199)
T ss_dssp SGGGTTCEEEETTGGGTSBCCCTTC----CCC-----H----HHHGGG-GTTTTTCEEEEEESCGGGB
T ss_pred ccccCceEEEEEChhhhccCccccc----hhH-----H----HHHHHH-hcCcCCeEEEEECCCHHHH
Confidence 123457899999999986422 111 111 1 122222 1245688999999985543
No 418
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.29 E-value=0.012 Score=52.04 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=33.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
+.|.|..|+||||++..++..+...|.+|+.+|.+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5568999999999999999999988999999998764
No 419
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.23 E-value=0.012 Score=55.51 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+++|+|||||||||++-.++..+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 499999999999999988775543
No 420
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.22 E-value=0.011 Score=48.89 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.++|+|++|+|||||+..+++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998753
No 421
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.22 E-value=0.018 Score=58.64 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+|.++.|.|.+||||||++..++..+...+-.++++|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 67899999999999999999999887665666666663
No 422
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.21 E-value=0.011 Score=50.15 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
.|.-++|.|++|+||||+++.++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 366799999999999999998865
No 423
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=95.19 E-value=0.018 Score=55.96 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=32.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
.-+.|+|++|||||+++..++..+...+..++.+|...
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkg 91 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNG 91 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 46889999999999999888888888888888888654
No 424
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.19 E-value=0.024 Score=49.78 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=32.5
Q ss_pred CEEEEEc-CCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 59 RVVEIYG-PEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 59 ~ii~I~G-~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
+++.|++ ..|+||||++..++..+...|.+|+++|.+.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 4566665 5899999999999999998888999999875
No 425
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.19 E-value=0.023 Score=49.18 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
++.|-|..||||||.+..++..+...|-.|++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5789999999999999999998888877776654
No 426
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.18 E-value=0.011 Score=54.21 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.++.|.|+|||||||++..++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999998763
No 427
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.18 E-value=0.011 Score=54.22 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~ 79 (366)
..+++|.|++||||||++..++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999987
No 428
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.16 E-value=0.013 Score=49.28 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
.++|+|++|+|||||+..++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998865
No 429
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.15 E-value=0.01 Score=57.60 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
...++.|+|+|||||||++..++..+ + ..+++.+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~----~-~~~i~~D 290 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA----G-YVHVNRD 290 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG----T-CEECCGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc----C-cEEEccc
Confidence 46899999999999999999886533 2 3556543
No 430
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.12 E-value=0.011 Score=55.22 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.++.|+||+|||||||+..++..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 489999999999999999997755
No 431
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.12 E-value=0.048 Score=57.16 Aligned_cols=92 Identities=14% Similarity=0.074 Sum_probs=49.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEeCCCCCCHH----HHhhcccccCcc-e-------ec----
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDPS----LAETIGVKTENL-L-------LA---- 116 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~---gg~vl~id~e~~~~~~----~~~~ig~~~~~~-~-------~~---- 116 (366)
..|+.+.|+||+||||||++.+++...... +..++++......-.. +++.++...... . ..
T Consensus 107 ~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~ 186 (773)
T 2xau_A 107 QNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKT 186 (773)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTC
T ss_pred hCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCC
Confidence 357899999999999999777775544322 3446665432111111 122222211100 0 00
Q ss_pred --CCCCHHHHHHHHHHHHhcCCceEEEEecccc
Q 017792 117 --QPDCGEQALSLVDTLIRSGSVDVVVVDSVAA 147 (366)
Q Consensus 117 --~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~ 147 (366)
...|...++..+.....-.+++++|+|....
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 0124555555444333345789999999974
No 432
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.08 E-value=0.031 Score=60.95 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=60.1
Q ss_pred hHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEeCCCCCCHH-------HHhhcccccC
Q 017792 43 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHALDPS-------LAETIGVKTE 111 (366)
Q Consensus 43 ~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~----~gg~vl~id~e~~~~~~-------~~~~ig~~~~ 111 (366)
+..|...|. .+=..-+++.|+|+.|.|||||+.+++..... ....++|++........ +...++....
T Consensus 133 ~~~l~~~l~-~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (1249)
T 3sfz_A 133 VHAIQQKLW-KLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEES 211 (1249)
T ss_dssp HHHHHHHHH-TTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHh-hccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcc
Confidence 345555663 12234468999999999999999988765422 23467888876543321 1222222111
Q ss_pred cceecCCCCHHHHHHHHHHHHhcC-CceEEEEeccc
Q 017792 112 NLLLAQPDCGEQALSLVDTLIRSG-SVDVVVVDSVA 146 (366)
Q Consensus 112 ~~~~~~~~~~e~~l~~~~~~~~~~-~~~lvviDsl~ 146 (366)
..-..+...+++...+...+... +.-++|+|.+.
T Consensus 212 -~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~ 246 (1249)
T 3sfz_A 212 -FSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW 246 (1249)
T ss_dssp -TCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCC
T ss_pred -cccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCC
Confidence 11123446677777777665432 35688999875
No 433
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=95.04 E-value=0.021 Score=52.27 Aligned_cols=50 Identities=18% Similarity=0.168 Sum_probs=39.8
Q ss_pred HHHHHhhCCCCcCCCCEEEEEc---CCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 44 FALDIALGTGGLPKGRVVEIYG---PEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G---~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
..+-+.+. ..++++.|++ ..|+||||++..++..+...|.+|+.+|.+..
T Consensus 24 ~~~~r~~~----~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q 76 (298)
T 2oze_A 24 EELRRILS----NKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQ 76 (298)
T ss_dssp HHHHHHHH----HHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred HHHHHHhc----CCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 44445554 2467788886 89999999999999999888889999998754
No 434
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.04 E-value=0.014 Score=54.36 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
..++.|+||+|||||||+..++..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999987664
No 435
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.00 E-value=0.014 Score=54.36 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.++.|+||+|||||||+..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999987654
No 436
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=95.00 E-value=0.02 Score=51.51 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=33.8
Q ss_pred CCCEEEEE-cCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 57 KGRVVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 57 ~G~ii~I~-G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
+++++.|+ +..|+||||++..++..+. .|.+|+++|.+..
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 45677775 5589999999999999999 8889999998754
No 437
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=94.98 E-value=0.031 Score=51.34 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=35.4
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 57 KGRVVEIYGP-EASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 57 ~G~ii~I~G~-~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
+++++.|+++ +|.||||++..++..+...|.+|++||.+..
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 4567878776 8999999999999999988889999998754
No 438
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.98 E-value=0.013 Score=52.03 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|.++.|.|..||||||++..++..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999988766
No 439
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.97 E-value=0.018 Score=50.65 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=25.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
.+|.++.|.|++||||||++..++..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999887754
No 440
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.94 E-value=0.029 Score=52.35 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=34.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
.++...|..|+||||++..++..+...|.+|+.+|.+.
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 67888899999999999999999998899999999875
No 441
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.89 E-value=0.012 Score=49.72 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988763
No 442
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.86 E-value=0.027 Score=56.99 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-CeEEEEeCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQG-GYCVFIDAE 95 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g-g~vl~id~e 95 (366)
.|.++.|.|.+||||||++..+...+...| ..+++++++
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 467899999999999999999998877655 556777743
No 443
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=94.84 E-value=0.0095 Score=57.84 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=24.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
++.|..++|+|+||||||||+..+++.
T Consensus 154 lk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 154 LMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp ECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 567899999999999999999988765
No 444
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.79 E-value=0.03 Score=48.76 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=26.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
..+.|+|++|+|||||+..++...... ..+..++
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~ 72 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIA 72 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEE
Confidence 478899999999999999999876543 3444444
No 445
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.73 E-value=0.03 Score=56.33 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
+.++.|.|.+||||||++..+...+...|..+.+++.+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 67899999999999999999998877666677777743
No 446
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.71 E-value=0.029 Score=51.35 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=25.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcC--CeEEEEeC
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQRQG--GYCVFIDA 94 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~~~g--g~vl~id~ 94 (366)
+.|+||+|+|||+++..++..+...+ ..+++++.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 89999999999999999998874322 23445554
No 447
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.68 E-value=0.02 Score=52.65 Aligned_cols=37 Identities=30% Similarity=0.233 Sum_probs=27.0
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
..|-..+. .|-.+ .+.|+||+|+||||++..++..+.
T Consensus 35 ~~l~~~l~-~~~~~--~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 35 KRLKHYVK-TGSMP--HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHH-HTCCC--EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCC--eEEEECcCCCCHHHHHHHHHHHhc
Confidence 34555554 33222 389999999999999999998864
No 448
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.65 E-value=0.012 Score=54.38 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
+.+++|+|+||+|||||+..+++.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 348999999999999999998753
No 449
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=94.64 E-value=0.041 Score=49.21 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=32.2
Q ss_pred CEEEE-EcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 59 RVVEI-YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 59 ~ii~I-~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
.++.| .+..|+||||++..++..+...|.+|+++|.+.
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 34555 567899999999999999998888999999875
No 450
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.62 E-value=0.02 Score=46.80 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999988753
No 451
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.58 E-value=0.021 Score=46.42 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999988753
No 452
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.55 E-value=0.021 Score=46.44 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999888753
No 453
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.52 E-value=0.044 Score=51.76 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=36.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
+...++.+.|..|+||||++..++..+...|.+|+.+|.+.
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 44567778899999999999999999998899999999875
No 454
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.51 E-value=0.021 Score=49.66 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.++.|.|++||||||++..++..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999887654
No 455
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.50 E-value=0.045 Score=55.38 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=36.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
..+++.+.|..|+||||++..++..+...|.+|+++|.+.
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4578999999999999999999999998898999999885
No 456
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.49 E-value=0.022 Score=46.30 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-+.++|++|+|||||+..++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988754
No 457
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.43 E-value=0.014 Score=56.59 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
++|+|+||+|||||++.+++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 59999999999999999987654
No 458
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.41 E-value=0.024 Score=46.17 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999888753
No 459
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=94.37 E-value=0.043 Score=47.75 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=29.9
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 60 VVEIYGP-EASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 60 ii~I~G~-~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
++.|++. .|+||||++..++..+...|.+|++++.
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 4566664 8999999999999999988889999873
No 460
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.024 Score=47.84 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
+.-.++|+|++|+|||||+..++..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999988764
No 461
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.31 E-value=0.026 Score=46.13 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+|++|+|||||+..++..
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999988754
No 462
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.31 E-value=0.026 Score=54.31 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.++.|.||+|||||||+..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998766
No 463
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.30 E-value=0.047 Score=47.44 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=31.1
Q ss_pred EEEE-EcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 60 VVEI-YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 60 ii~I-~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
++.+ .+..|+||||++..++..+...| +|+++|.+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q 39 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPN 39 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCC
Confidence 3444 57789999999999999999888 9999998754
No 464
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=94.30 E-value=0.051 Score=51.49 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=40.8
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEeCCCC
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHA 97 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~~gg~vl~id~e~~ 97 (366)
|.|+.++. . +.-.++...|..|.||||++..++..+. ..|.+|+.+|.+..
T Consensus 7 ~~l~~l~~-~--~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 7 PNLHSLIT-S--TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp SSCHHHHT-C--SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred ccHHHHhc-C--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 34666665 2 2235777889999999999999999998 88889999998864
No 465
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.30 E-value=0.017 Score=53.74 Aligned_cols=34 Identities=15% Similarity=-0.040 Sum_probs=26.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
|.-+.|+||||+|||+|+..++..+ +..+..+..
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~---~~~~~~i~~ 79 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQF 79 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh---CCCeEEEec
Confidence 3468999999999999999998765 334455554
No 466
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.29 E-value=0.027 Score=53.57 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
.+++|+|+||+||||++-.+..
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4999999999999999888775
No 467
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.27 E-value=0.026 Score=46.26 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||||+..++.
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 78999999999999998874
No 468
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.25 E-value=0.027 Score=46.73 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999888753
No 469
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.25 E-value=0.027 Score=46.12 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 470
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.25 E-value=0.027 Score=46.18 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999888754
No 471
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.24 E-value=0.027 Score=46.61 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988653
No 472
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.23 E-value=0.048 Score=49.03 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=34.3
Q ss_pred CCEEEEE-cCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC
Q 017792 58 GRVVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 98 (366)
Q Consensus 58 G~ii~I~-G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~ 98 (366)
+.++.|+ +..|+||||++..++..+...|.+|+++|.+...
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 5567766 5578999999999999999888899999987544
No 473
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.21 E-value=0.028 Score=45.84 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
-++|+|++|+|||||+..+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999998875
No 474
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.17 E-value=0.031 Score=49.71 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
-.+|.|+|||||||++..++..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999988766
No 475
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.15 E-value=0.027 Score=46.41 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
-++|+|++|+|||||+..++.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 378999999999999988864
No 476
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.15 E-value=0.014 Score=52.54 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.++.++.|.|++||||||++..++..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999998886554
No 477
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.11 E-value=0.028 Score=46.03 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
-++|+|++|+|||||+..++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999988865
No 478
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.09 E-value=0.031 Score=45.69 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988753
No 479
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.06 E-value=0.029 Score=45.98 Aligned_cols=20 Identities=35% Similarity=0.343 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||||+..++.
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999988853
No 480
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.03 E-value=0.034 Score=45.31 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+|++|+|||||+..++..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988754
No 481
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.98 E-value=0.028 Score=54.86 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=22.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
++++ -+.|+||||+||||+++.++..+.
T Consensus 48 ~~~~-~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 48 VTPK-NILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCCC-CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cCCc-eEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3443 378999999999999999988763
No 482
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.96 E-value=0.032 Score=46.22 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999988764
No 483
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.94 E-value=0.034 Score=45.60 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
.--++|+|++|+|||||+..++.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34589999999999999998864
No 484
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.93 E-value=0.035 Score=54.65 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
..-+.|+||||+|||+++..++..+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999988753
No 485
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.89 E-value=0.035 Score=46.52 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988753
No 486
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.89 E-value=0.033 Score=45.97 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
-++|+|++|+|||||+..++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998874
No 487
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.88 E-value=0.044 Score=54.54 Aligned_cols=40 Identities=10% Similarity=0.260 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhh-cC-CeEEEEeCCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQR-QG-GYCVFIDAEH 96 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~g-g~vl~id~e~ 96 (366)
.|.++.|.|.+||||||+++.++..+.. .+ ..+.|+|++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 5678999999999999999999998875 44 3456777654
No 488
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=93.88 E-value=0.077 Score=49.60 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=35.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
..++.+.|..|+||||++..++..+...|.+|+++|.+..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4578888999999999999999999988889999998754
No 489
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.88 E-value=0.043 Score=45.37 Aligned_cols=24 Identities=38% Similarity=0.369 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
+.-.++|+|++|+|||||+..++.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 455789999999999999988864
No 490
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.87 E-value=0.035 Score=46.68 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999998754
No 491
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.86 E-value=0.026 Score=51.14 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.++|+|++|+|||||+..+++.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998654
No 492
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.83 E-value=0.035 Score=47.94 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
-++|+|++|+|||||+..++...
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999887643
No 493
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.82 E-value=0.031 Score=45.67 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~ 79 (366)
++|+|++|+|||||+..++
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 7899999999999998875
No 494
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.82 E-value=0.063 Score=54.79 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAE 95 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e 95 (366)
+.++.|.||||+||||++..++..+.. .+.++++...-
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 458999999999999999988887765 45666666543
No 495
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.81 E-value=0.037 Score=45.70 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999988753
No 496
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.81 E-value=0.036 Score=46.71 Aligned_cols=22 Identities=18% Similarity=0.447 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 497
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.81 E-value=0.029 Score=49.61 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..+++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5889999999999999988753
No 498
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.80 E-value=0.037 Score=46.25 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988753
No 499
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.75 E-value=0.038 Score=45.97 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5889999999999999888753
No 500
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.73 E-value=0.038 Score=46.64 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4889999999999999888763
Done!