Query 017795
Match_columns 366
No_of_seqs 325 out of 2171
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 05:04:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.7 4.7E-15 1.6E-19 144.7 21.3 185 129-352 245-439 (451)
2 4aps_A DI-OR tripeptide H+ sym 99.6 2.5E-14 8.6E-19 141.7 19.9 173 137-348 14-198 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.6 1.3E-14 4.4E-19 141.6 12.8 175 136-349 28-209 (451)
4 3o7q_A L-fucose-proton symport 99.6 9E-14 3.1E-18 135.3 18.5 144 138-288 28-177 (438)
5 2gfp_A EMRD, multidrug resista 99.6 2.3E-14 8E-19 137.0 13.5 171 140-349 4-177 (375)
6 3o7q_A L-fucose-proton symport 99.5 2.5E-13 8.5E-18 132.1 18.6 155 129-292 251-409 (438)
7 2xut_A Proton/peptide symporte 99.5 3.5E-13 1.2E-17 134.7 15.4 170 136-344 12-196 (524)
8 2cfq_A Lactose permease; trans 99.4 6.9E-13 2.4E-17 129.5 14.4 182 129-349 213-402 (417)
9 4gc0_A D-xylose-proton symport 99.3 1.8E-11 6.1E-16 121.0 14.5 173 149-354 290-470 (491)
10 4aps_A DI-OR tripeptide H+ sym 99.2 1.5E-10 5.2E-15 114.4 17.0 180 138-352 285-477 (491)
11 4gc0_A D-xylose-proton symport 99.2 1.3E-10 4.4E-15 114.8 14.7 129 155-290 31-188 (491)
12 2gfp_A EMRD, multidrug resista 99.1 4.8E-11 1.6E-15 113.8 7.6 156 127-292 190-354 (375)
13 2cfq_A Lactose permease; trans 99.0 9.1E-11 3.1E-15 114.4 3.0 149 132-289 3-163 (417)
14 2xut_A Proton/peptide symporte 98.6 1.2E-07 4E-12 94.4 10.3 83 208-291 376-468 (524)
15 2knc_B Integrin beta-3; transm 42.7 26 0.0009 25.1 3.8 29 318-346 3-32 (79)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.67 E-value=4.7e-15 Score=144.74 Aligned_cols=185 Identities=16% Similarity=0.164 Sum_probs=147.0
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhh--hhhccCc
Q 017795 129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAI--VRKFAYP 203 (366)
Q Consensus 129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~--grr~~~~ 203 (366)
.++.++++.+|.+.+..++.......+..++|.+.++ +|++.... ..++..++..++++++|+++||+ +||+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~- 323 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT- 323 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH-
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH-
Confidence 4567788999998888888877777788899999887 79987765 78888899999999999999999 775433
Q ss_pred hhHHHHHHHHHHH-HHHHHHHhc---chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhh-hHHH
Q 017795 204 RPVAMAVAQVVMA-FALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPA-GSLI 278 (366)
Q Consensus 204 R~~~~~~~~~~~~-~~~~l~~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~-G~~i 278 (366)
..+.++.. ++++++... +...+.+..++.|++.+..++...+++.|.+|++++|+++|+.+....+ |..+
T Consensus 324 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~ 398 (451)
T 1pw4_A 324 -----GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 398 (451)
T ss_dssp -----HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHH
Confidence 33333333 455544432 3445666777888888888888889999999999999999999999999 9996
Q ss_pred hhhhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHH
Q 017795 279 FSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS 352 (366)
Q Consensus 279 ~gp~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~ 352 (366)
+|.+.|++.|..+ |+..|++.+++++++.++.+++.++.++
T Consensus 399 -~~~~~g~l~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
T 1pw4_A 399 -ASAIVGYTVDFFG--------------------------------WDGGFMVMIGGSILAVILLIVVMIGEKR 439 (451)
T ss_dssp -HHHHHHHHHHSSC--------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcC--------------------------------cHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999877 9999999998888887776665544333
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.61 E-value=2.5e-14 Score=141.75 Aligned_cols=173 Identities=13% Similarity=0.124 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHhcHHHHHHH------hCCChhHH--HHHHHHHHHhhhhhhhhhhhhh-hhhhccCchhHH
Q 017795 137 DFLLLFFSLVLASGSGLTVIDNLGQICQS------LGYADTSI--YVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPVA 207 (366)
Q Consensus 137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~------~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~-~grr~~~~R~~~ 207 (366)
.+|.+++..++.....+.+..+++.+.++ +|++..+. ..+.+.++..++.+++|+++|| +|||+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~----- 88 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV----- 88 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH-----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH-----
Confidence 46777777766666666666777777654 78887766 8889999999999999999999 8998765
Q ss_pred HHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCc--hhhHHHHHHhHhhhhHHHhhhhHH
Q 017795 208 MAVAQVVMAFALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS--FGALYNFLTLASPAGSLIFSGVIA 284 (366)
Q Consensus 208 ~~~~~~~~~~~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~--~g~~~g~~~~~~~~G~~i~gp~i~ 284 (366)
..+.++.+++.++++ ..+...++++.++.|++.+...+...++++|.++.++ ++.++++.+....+|..+ ||.++
T Consensus 89 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~ 166 (491)
T 4aps_A 89 -FWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI-APLIV 166 (491)
T ss_dssp -HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred -HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH-HHHHH
Confidence 677777777777766 4466778889999999999999999999999999988 888899899999999996 99999
Q ss_pred HHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 017795 285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH 348 (366)
Q Consensus 285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~ 348 (366)
|++.+..+ |++.|++.++.++++.++.++..+
T Consensus 167 ~~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 167 GAAQEAAG--------------------------------YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHSC--------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhh--------------------------------HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99998776 999999988877776666554433
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.57 E-value=1.3e-14 Score=141.62 Aligned_cols=175 Identities=14% Similarity=0.136 Sum_probs=140.6
Q ss_pred hHHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 017795 136 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV 213 (366)
Q Consensus 136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~ 213 (366)
+.++.+++..++.......+...+|.+.+++ .+..+. ..++..++..++.+++|+++||+|||+.+ .++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~~~ 100 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH------HHHHH
Confidence 3455555666655555555667788888888 776655 78889999999999999999999998654 66777
Q ss_pred HHHHHHHHHHh-----cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHh
Q 017795 214 VMAFALLYYAI-----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY 288 (366)
Q Consensus 214 ~~~~~~~l~~~-----~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~ 288 (366)
+.+++.++++. .+...++++.++.|++.+..++...++++|.++.++|+.++++.+....+|..+ ||.++|++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~ 179 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLGM 179 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 77777666544 355678889999999999999999999999999999999999999999999996 999999988
Q ss_pred hhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795 289 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR 349 (366)
Q Consensus 289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 349 (366)
+..+ +|++.|++.++++++..++.+++.++
T Consensus 180 ~~~g-------------------------------~w~~~f~~~~~~~~~~~~~~~~~~~~ 209 (451)
T 1pw4_A 180 AWFN-------------------------------DWHAALYMPAFCAILVALFAFAMMRD 209 (451)
T ss_dssp HHTC-------------------------------CSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhc-------------------------------cHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 6554 29999999998887777666555444
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.56 E-value=9e-14 Score=135.27 Aligned_cols=144 Identities=15% Similarity=0.049 Sum_probs=119.8
Q ss_pred HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017795 138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM 215 (366)
Q Consensus 138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~ 215 (366)
++.+.+.+++...........+|.+.+++|.+..+. ..+...++..++.+++|+++||+|||+.+ ..+.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l------~~~~~~~ 101 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI------ITGLFLY 101 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH------HHHHHHH
Confidence 344444555554444566667889999999988776 88899999999999999999999998765 6677777
Q ss_pred HHHHHHH---H-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHh
Q 017795 216 AFALLYY---A-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY 288 (366)
Q Consensus 216 ~~~~~l~---~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~ 288 (366)
+++.++. . ..+...++++.++.|++.+...+...++++|.+++++|+.+.++.+....+|..+ +|.+++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~ 177 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH-HHHHTTHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 7776665 4 3566778899999999999999999999999999999999999999999999996 999999988
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.56 E-value=2.3e-14 Score=136.98 Aligned_cols=171 Identities=10% Similarity=0.128 Sum_probs=139.2
Q ss_pred HHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHH
Q 017795 140 LLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAF 217 (366)
Q Consensus 140 ll~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~ 217 (366)
++.+..++.......+...+|.+.+++|.+..+. ..+...++..++.+.+|+++||+|||+.. ..+.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~ 77 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHH
Confidence 3444555555555566677888999999988766 78889999999999999999999999887 667677777
Q ss_pred HHHHHH-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhh
Q 017795 218 ALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA 296 (366)
Q Consensus 218 ~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~ 296 (366)
+.++.. ..+...+++..++.|++.+...+...++++|.+++++++.++++.+....+|..+ +|.++|++.+..+
T Consensus 78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~---- 152 (375)
T 2gfp_A 78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL-APLIGGLLDTMWN---- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH-HHHHHHHSSCHHH----
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcc----
Confidence 666655 4455677888999999999999999999999999999999999999999999996 9999999998777
Q ss_pred hhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795 297 GLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR 349 (366)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 349 (366)
|++.|++.+++.++..+...+..++
T Consensus 153 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 153 ----------------------------WRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 9999998887776665544333333
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.53 E-value=2.5e-13 Score=132.14 Aligned_cols=155 Identities=12% Similarity=0.084 Sum_probs=121.8
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHH-HHHh-CCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017795 129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSL-GYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR 204 (366)
Q Consensus 129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i-~~~~-g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R 204 (366)
+++.++++.+|...+..++.......+..++|.+ .++. |++.... ..++..++..+++++.|+++||++||+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~-- 328 (438)
T 3o7q_A 251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL-- 328 (438)
T ss_dssp HHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--
Confidence 4566778889988888888777777888899998 8775 9887765 77778889999999999999999887544
Q ss_pred hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHH
Q 017795 205 PVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA 284 (366)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~ 284 (366)
..+.++.+++.+++.........+..++.|++.+..++...++..|.++++ ++.+.++.. ...+|+.+ +|.+.
T Consensus 329 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~-~~~~~ 401 (438)
T 3o7q_A 329 ----AAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGI-VTPVM 401 (438)
T ss_dssp ----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHH-HHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHH-HHHHH
Confidence 555566666655555444444455567888999988999999989999866 788888776 55688886 99999
Q ss_pred HHHhhhhh
Q 017795 285 SGIYDYYA 292 (366)
Q Consensus 285 G~l~d~~~ 292 (366)
|++.|..+
T Consensus 402 g~l~~~~g 409 (438)
T 3o7q_A 402 GFVSDAAG 409 (438)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99999876
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.48 E-value=3.5e-13 Score=134.72 Aligned_cols=170 Identities=12% Similarity=0.103 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhC------CChhHH--HHHHHHHHHhhhhhhhhhhhhhh-hhhccCchh
Q 017795 136 ADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLG------YADTSI--YVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRP 205 (366)
Q Consensus 136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g------~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~-grr~~~~R~ 205 (366)
+.+|.+++..++.....+....+++.+. +++| ++.... ..+++.++..++.+++|+++||+ |||+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~--- 88 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI--- 88 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH---
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH---
Confidence 3456666666666666666667777765 5578 877665 78888999999999999999999 987655
Q ss_pred HHHHHHHHHHHHHHHHHH-hc-chhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHH---HHhHhhhhHHHhh
Q 017795 206 VAMAVAQVVMAFALLYYA-IG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNF---LTLASPAGSLIFS 280 (366)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~-~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~---~~~~~~~G~~i~g 280 (366)
.++.++.+++.+++. .. +...++++.++.|++.+...+...++++|.+++++++...+. .+....+|..+ |
T Consensus 89 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-g 164 (524)
T 2xut_A 89 ---LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF-A 164 (524)
T ss_dssp ---HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH-H
T ss_pred ---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH-H
Confidence 566667777766665 34 566788889999999999999999999999999998765555 88899999996 9
Q ss_pred hhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017795 281 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL 344 (366)
Q Consensus 281 p~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~ 344 (366)
|.++|++.+..+ |++.|++.+++.+++.++.+
T Consensus 165 ~~~~~~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 165 SLSMPLLLKNFG--------------------------------AAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHTSTHHHHTSC--------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc--------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 999999988766 99999998887766555443
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.45 E-value=6.9e-13 Score=129.46 Aligned_cols=182 Identities=10% Similarity=0.048 Sum_probs=128.0
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHHh-CCC---hhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017795 129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL-GYA---DTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAY 202 (366)
Q Consensus 129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~-g~~---~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~ 202 (366)
+++.++++++|.+.+..++.......+..++|.+.++. +.. .... ..++..++..++.++.|+++||++||+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l 292 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL 292 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Confidence 34677888888766554444433344555677776553 321 1111 45566677888999999999999987644
Q ss_pred chhHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHH-HhHhhhhHHHhh
Q 017795 203 PRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFL-TLASPAGSLIFS 280 (366)
Q Consensus 203 ~R~~~~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~-~~~~~~G~~i~g 280 (366)
..+.++++++.+++.. .+...+++..++.+++.+...+....+++|.+|++.+|+++++. +....+|+.+ +
T Consensus 293 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~-g 365 (417)
T 2cfq_A 293 ------LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF-M 365 (417)
T ss_dssp ------HHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH-H
T ss_pred ------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH-h
Confidence 4555555555555543 33444555556667776666666778999999999999999994 8888899996 9
Q ss_pred hhHHHHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017795 281 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR 349 (366)
Q Consensus 281 p~i~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 349 (366)
|.++|+++|..+ |...|.+.++++++++++.+.+.++
T Consensus 366 p~l~G~l~~~~g--------------------------------~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 366 SVLAGNMYESIG--------------------------------FQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp THHHHTHHHHSH--------------------------------HHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred hhhHHHHHHhcC--------------------------------cHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 999999999776 8889999888888877665544433
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.31 E-value=1.8e-11 Score=120.99 Aligned_cols=173 Identities=12% Similarity=0.006 Sum_probs=116.4
Q ss_pred hhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH---
Q 017795 149 SGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA--- 223 (366)
Q Consensus 149 ~~~~~~~~~~l~~i~~~~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~--- 223 (366)
......+..+.+.+.+..+.+.... ...+.++...++.++.+++.||+|||+.. ..+...++++.+.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~------~~~~~~~~~~~~~l~~~~ 363 (491)
T 4gc0_A 290 FVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ------IIGALGMAIGMFSLGTAF 363 (491)
T ss_dssp HTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh------ccchHHHHHHHHHHHHHH
Confidence 3334455566777888888776554 55666788889999999999999998654 334444444333322
Q ss_pred -hcch-hHHHHHHHHHHHHhh-hhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHHHHhhhhhhhhhhhhh
Q 017795 224 -IGWP-GEIYVTTVLVGLSYG-AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLW 300 (366)
Q Consensus 224 -~~~~-~~l~~~~~l~G~~~g-~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G~l~d~~~~~~~~~~~ 300 (366)
.... ....+..++...+++ +..++.+.+.+|+||++.|+++.|+.+....+|+++ ++.+.+.+.+.......
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i-~~~~~p~l~~~~~~~~~---- 438 (491)
T 4gc0_A 364 YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYF-VSWTFPMMDKNSWLVAH---- 438 (491)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHH-HHTHHHHHCHHHHHHHH----
T ss_pred hcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh----
Confidence 1122 222233333333322 234667789999999999999999999999999996 78888777654321100
Q ss_pred hccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 017795 301 KYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVY 354 (366)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~~ 354 (366)
..+...|++.+++++++++..+++.+|||.+.
T Consensus 439 ----------------------~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 439 ----------------------FHNGFSYWIYGCMGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp ----------------------HTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred ----------------------hhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence 01556788999999999988888888887643
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.24 E-value=1.5e-10 Score=114.40 Aligned_cols=180 Identities=14% Similarity=0.061 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCCh--hHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHH
Q 017795 138 FLLLFFSLVLASGSGLTVIDNLGQICQS-LGYAD--TSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV 214 (366)
Q Consensus 138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~--~~~~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~ 214 (366)
++.+++..++...........++.+.++ ++.+. .....++..++..++.++.|+++||++||+.. +...+..+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~-~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS-SPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC-chHHHHHHHHH
Confidence 3444434333334444455667777765 45542 22366677778888899999999999998654 23334456666
Q ss_pred HHHHHHHHHh----------cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHH
Q 017795 215 MAFALLYYAI----------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA 284 (366)
Q Consensus 215 ~~~~~~l~~~----------~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~ 284 (366)
++++++++.. .+...+.+..++.|++.+...+...+++.|.+|.+.+|++.|+.+....+|..+ +|.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-~~~~~ 442 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL-NAQLV 442 (491)
T ss_dssp HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH-HHHHG
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 6666554432 133456677788899988888889999999999999999999999999999996 99999
Q ss_pred HHHhhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHhhcHH
Q 017795 285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS 352 (366)
Q Consensus 285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~ 352 (366)
|++.|. + +.+.|++.+++++++.++.+++.++.++
T Consensus 443 ~~~~~~-~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 443 TLYNAK-S--------------------------------EVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp GGGGGS-S--------------------------------TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHhcc-c--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887753 2 6678888888888777776666555444
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.21 E-value=1.3e-10 Score=114.83 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=101.0
Q ss_pred HHhcHHHHHHHhCCC----hh--H----HHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-
Q 017795 155 VIDNLGQICQSLGYA----DT--S----IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA- 223 (366)
Q Consensus 155 ~~~~l~~i~~~~g~~----~~--~----~~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~- 223 (366)
+...+|.+.++++.+ .. . ..++.+.++..+|.+++|+++||+|||+.+ .++.+++.++.++.+
T Consensus 31 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l------~~~~~l~~i~~i~~a~ 104 (491)
T 4gc0_A 31 ISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL------KIAAVLFFISGVGSAW 104 (491)
T ss_dssp GGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHHHHHHHH
Confidence 344577777666432 11 1 166778889999999999999999998766 666667766666544
Q ss_pred ------------------hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHhhhhHHH
Q 017795 224 ------------------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS 285 (366)
Q Consensus 224 ------------------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~i~G 285 (366)
..+...+++++++.|++.|+..+..+.+++|..|+++|+...++...+..+|..+ ++.+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~-~~~~~~ 183 (491)
T 4gc0_A 105 PELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL-VYCVNY 183 (491)
T ss_dssp TTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh-hhhcch
Confidence 3455678999999999999999999999999999999999999999999999885 666665
Q ss_pred HHhhh
Q 017795 286 GIYDY 290 (366)
Q Consensus 286 ~l~d~ 290 (366)
.+...
T Consensus 184 ~~~~~ 188 (491)
T 4gc0_A 184 FIARS 188 (491)
T ss_dssp HHHTT
T ss_pred hhccc
Confidence 55443
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.14 E-value=4.8e-11 Score=113.83 Aligned_cols=156 Identities=12% Similarity=0.044 Sum_probs=117.5
Q ss_pred CCHHHHhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc
Q 017795 127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP 203 (366)
Q Consensus 127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~ 203 (366)
.++++.++++.+|.+.+..++.......+..++|.+.++ +|++.... ..+...++..+++++.|+++||++++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--- 266 (375)
T 2gfp_A 190 TSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--- 266 (375)
T ss_dssp TCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH---
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 456788899999988888877777777777788887766 78876654 677778888999999999999987621
Q ss_pred hhHHHHHHHHH-HHHHHH--HHHh---cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHH
Q 017795 204 RPVAMAVAQVV-MAFALL--YYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL 277 (366)
Q Consensus 204 R~~~~~~~~~~-~~~~~~--l~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~ 277 (366)
..+..+ ...+.. .... .+...+++..++.|++.+..++...+.+.|.+| +++|++.++.+....+|..
T Consensus 267 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~ 340 (375)
T 2gfp_A 267 -----WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG 340 (375)
T ss_dssp -----HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH
Confidence 111111 121211 1111 233445567778899999889999999999998 8999999999999999999
Q ss_pred HhhhhHHHHHhhhhh
Q 017795 278 IFSGVIASGIYDYYA 292 (366)
Q Consensus 278 i~gp~i~G~l~d~~~ 292 (366)
+ +|.+.|.+.+..+
T Consensus 341 ~-~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 341 V-LASLSAMLPQTGQ 354 (375)
T ss_dssp C-CSTTCTHHHHHHH
T ss_pred H-HHHHHHHHhcCCc
Confidence 6 9999999987665
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.01 E-value=9.1e-11 Score=114.36 Aligned_cols=149 Identities=12% Similarity=0.058 Sum_probs=93.7
Q ss_pred HhhhhHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017795 132 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM 208 (366)
Q Consensus 132 ~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~--~~sl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~ 208 (366)
.++++.+|.+....++.......+...+|.+.++ +|++..+. ..+...++..++++++|+++||+|||+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l------ 76 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL------ 76 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH------
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------
Confidence 4688899988777766665555666788887765 79887654 88888999999999999999999998755
Q ss_pred HHHHHHHHH---HHHHHHhcch--hHHHHHHHHHHHHhh----hhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHHHh
Q 017795 209 AVAQVVMAF---ALLYYAIGWP--GEIYVTTVLVGLSYG----AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF 279 (366)
Q Consensus 209 ~~~~~~~~~---~~~l~~~~~~--~~l~~~~~l~G~~~g----~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~ 279 (366)
..+.++.++ .......... ...+...++.+++.| ...+....+..+. .++++..+|.......+|..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~- 153 (417)
T 2cfq_A 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCVGWAL- 153 (417)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTTHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHHHHHH-
Confidence 333332222 1111111000 001122222233222 2223333333332 245677788888888999986
Q ss_pred hhhHHHHHhh
Q 017795 280 SGVIASGIYD 289 (366)
Q Consensus 280 gp~i~G~l~d 289 (366)
+|.++|++.+
T Consensus 154 ~~~l~~~l~~ 163 (417)
T 2cfq_A 154 GASIVGIMFT 163 (417)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999886
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.61 E-value=1.2e-07 Score=94.40 Aligned_cols=83 Identities=12% Similarity=-0.044 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHh----------cchhHHHHHHHHHHHHhhhhhhhHHHHHHHhhCCCchhhHHHHHHhHhhhhHH
Q 017795 208 MAVAQVVMAFALLYYAI----------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL 277 (366)
Q Consensus 208 ~~~~~~~~~~~~~l~~~----------~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~ 277 (366)
+.++.++++++++++.. .+...+.+..++.|++.+...+...+++.|.+|++.+|+++|+.++...+|+.
T Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 455 (524)
T 2xut_A 376 MGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNL 455 (524)
T ss_dssp HHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHH
Confidence 34566666666655443 13345666778889998888888888999999999999999999999999999
Q ss_pred HhhhhHHHHHhhhh
Q 017795 278 IFSGVIASGIYDYY 291 (366)
Q Consensus 278 i~gp~i~G~l~d~~ 291 (366)
+ ||.+.|.+.+..
T Consensus 456 ~-g~~~~g~~~~~~ 468 (524)
T 2xut_A 456 W-VLLANVSVKSPT 468 (524)
T ss_dssp H-HHHHHHHTTSCH
T ss_pred H-HHHHHHHhcccc
Confidence 6 999999998854
No 15
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=42.66 E-value=26 Score=25.14 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=16.2
Q ss_pred cc-cCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017795 318 TC-LGSICYSITCGIMAGLCIIAMVMSLIV 346 (366)
Q Consensus 318 ~c-~g~~~~~~~f~i~~~~~~~~~~~~~~~ 346 (366)
.| ..+.-+..+..+.+++.++++++.++.
T Consensus 3 ~Cp~~~n~~~Iv~gvi~gilliGllllliw 32 (79)
T 2knc_B 3 MGSKGPDILVVLLSVMGAILLIGLAALLIW 32 (79)
T ss_dssp SSCSSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 35 333345555567777666666554443
Done!