Query 017797
Match_columns 365
No_of_seqs 422 out of 4351
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 03:31:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3854 SpoIIIAA ncharacterize 100.0 1.3E-37 2.7E-42 277.7 20.2 241 2-250 1-268 (308)
2 COG1126 GlnQ ABC-type polar am 100.0 6.1E-36 1.3E-40 265.6 12.8 170 97-271 5-230 (240)
3 COG4152 ABC-type uncharacteriz 100.0 3.1E-36 6.7E-41 271.2 10.0 167 97-267 5-220 (300)
4 COG2805 PilT Tfp pilus assembl 100.0 1.4E-33 3E-38 260.8 19.2 223 13-246 3-243 (353)
5 COG1120 FepC ABC-type cobalami 100.0 1.5E-33 3.3E-38 260.6 13.6 166 97-266 5-228 (258)
6 COG4555 NatA ABC-type Na+ tran 100.0 1.6E-33 3.5E-38 247.2 9.2 168 97-267 4-223 (245)
7 PRK13537 nodulation ABC transp 100.0 4.6E-32 1E-36 260.4 13.9 166 97-266 10-227 (306)
8 COG1125 OpuBA ABC-type proline 100.0 2.5E-32 5.5E-37 247.4 10.7 174 97-275 4-234 (309)
9 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.6E-31 3.4E-36 246.1 13.7 166 97-267 7-228 (254)
10 COG1127 Ttg2A ABC-type transpo 100.0 1.4E-31 3.1E-36 241.1 13.1 176 97-276 11-245 (263)
11 PRK13536 nodulation factor exp 100.0 1.8E-31 4E-36 259.5 14.9 166 97-266 44-261 (340)
12 COG1135 AbcC ABC-type metal io 100.0 6.1E-31 1.3E-35 244.7 13.8 179 97-277 4-242 (339)
13 COG3842 PotA ABC-type spermidi 100.0 7.1E-31 1.5E-35 252.8 12.3 172 97-277 8-238 (352)
14 TIGR01288 nodI ATP-binding ABC 100.0 5.6E-31 1.2E-35 252.7 11.2 166 97-266 7-224 (303)
15 COG1131 CcmA ABC-type multidru 100.0 1.2E-30 2.6E-35 249.0 12.0 166 97-266 7-226 (293)
16 COG3638 ABC-type phosphate/pho 100.0 3.3E-30 7.2E-35 231.7 13.1 166 97-266 6-237 (258)
17 COG3839 MalK ABC-type sugar tr 100.0 4.4E-30 9.6E-35 246.0 12.7 174 97-279 6-237 (338)
18 COG1124 DppF ABC-type dipeptid 100.0 1.8E-29 3.8E-34 228.3 14.7 165 97-267 6-232 (252)
19 COG1116 TauB ABC-type nitrate/ 100.0 1.4E-29 3E-34 230.6 12.2 152 97-252 6-206 (248)
20 COG1118 CysA ABC-type sulfate/ 100.0 6.2E-30 1.3E-34 237.5 9.8 173 97-273 5-234 (345)
21 PRK11650 ugpC glycerol-3-phosp 100.0 4.3E-29 9.3E-34 244.3 13.4 171 97-271 6-229 (356)
22 COG1117 PstB ABC-type phosphat 100.0 8.5E-29 1.8E-33 219.4 13.7 175 97-276 10-247 (253)
23 TIGR03258 PhnT 2-aminoethylpho 100.0 5.2E-29 1.1E-33 244.0 13.1 169 97-269 8-231 (362)
24 PRK11432 fbpC ferric transport 100.0 5.5E-29 1.2E-33 243.0 13.2 170 97-270 9-230 (351)
25 TIGR02314 ABC_MetN D-methionin 100.0 6.7E-29 1.5E-33 241.4 13.0 171 97-269 4-233 (343)
26 TIGR03265 PhnT2 putative 2-ami 100.0 6.5E-29 1.4E-33 242.7 12.9 169 97-269 7-227 (353)
27 COG1122 CbiO ABC-type cobalt t 100.0 4.5E-29 9.7E-34 229.9 10.8 168 97-267 6-229 (235)
28 COG4559 ABC-type hemin transpo 100.0 1.2E-28 2.6E-33 218.1 12.8 166 97-267 4-231 (259)
29 PRK11000 maltose/maltodextrin 100.0 1.6E-28 3.4E-33 241.6 13.6 170 97-270 6-227 (369)
30 PRK09536 btuD corrinoid ABC tr 100.0 1.1E-28 2.3E-33 244.3 12.4 167 97-267 6-229 (402)
31 cd03261 ABC_Org_Solvent_Resist 100.0 1.5E-28 3.3E-33 227.3 12.1 166 97-266 3-226 (235)
32 PRK10851 sulfate/thiosulfate t 100.0 2.1E-28 4.5E-33 239.2 13.3 170 97-270 5-230 (353)
33 cd03265 ABC_DrrA DrrA is the A 100.0 2.4E-28 5.1E-33 223.8 12.5 163 97-263 3-218 (220)
34 TIGR03522 GldA_ABC_ATP gliding 100.0 2E-28 4.3E-33 234.8 12.0 165 97-266 5-221 (301)
35 PRK09452 potA putrescine/sperm 100.0 2.8E-28 6.2E-33 239.7 13.2 169 97-269 17-237 (375)
36 PRK11153 metN DL-methionine tr 100.0 2.8E-28 6.1E-33 237.7 13.1 170 97-268 4-232 (343)
37 TIGR01188 drrA daunorubicin re 100.0 1.5E-28 3.2E-33 235.8 10.8 160 103-266 2-213 (302)
38 cd03218 ABC_YhbG The ABC trans 100.0 4.8E-28 1E-32 223.3 12.8 166 97-266 3-222 (232)
39 COG0411 LivG ABC-type branched 100.0 6.1E-29 1.3E-33 224.9 6.6 167 97-268 7-241 (250)
40 cd03259 ABC_Carb_Solutes_like 100.0 3.2E-28 6.9E-33 221.7 11.3 159 97-259 3-213 (213)
41 PRK11607 potG putrescine trans 100.0 5.1E-28 1.1E-32 238.2 13.0 170 97-270 22-243 (377)
42 cd03296 ABC_CysA_sulfate_impor 100.0 7.8E-28 1.7E-32 223.1 13.4 166 97-266 5-226 (239)
43 cd03258 ABC_MetN_methionine_tr 99.9 6.3E-28 1.4E-32 222.8 12.1 166 97-266 4-230 (233)
44 cd03224 ABC_TM1139_LivF_branch 99.9 7E-28 1.5E-32 220.7 12.0 165 97-265 3-220 (222)
45 COG0410 LivF ABC-type branched 99.9 1.2E-27 2.7E-32 214.9 12.8 167 97-267 6-227 (237)
46 PRK11264 putative amino-acid A 99.9 1.2E-27 2.6E-32 223.2 13.2 166 97-266 6-233 (250)
47 cd03219 ABC_Mj1267_LivG_branch 99.9 8.6E-28 1.9E-32 222.2 12.0 166 97-266 3-232 (236)
48 PRK13651 cobalt transporter AT 99.9 1E-27 2.2E-32 230.2 12.6 168 97-267 5-255 (305)
49 cd03216 ABC_Carb_Monos_I This 99.9 4.5E-28 9.7E-33 212.2 9.3 151 97-257 3-162 (163)
50 cd03293 ABC_NrtD_SsuB_transpor 99.9 8.7E-28 1.9E-32 220.0 11.4 161 97-261 3-218 (220)
51 PRK13638 cbiO cobalt transport 99.9 1.2E-27 2.7E-32 226.0 12.6 166 97-266 4-225 (271)
52 cd03268 ABC_BcrA_bacitracin_re 99.9 1E-27 2.2E-32 217.6 11.3 159 97-259 3-208 (208)
53 COG0444 DppD ABC-type dipeptid 99.9 3.4E-27 7.3E-32 222.0 14.9 173 97-271 4-248 (316)
54 cd03256 ABC_PhnC_transporter A 99.9 1.7E-27 3.6E-32 220.9 12.6 165 97-265 3-233 (241)
55 cd03301 ABC_MalK_N The N-termi 99.9 1.5E-27 3.2E-32 217.3 12.1 159 97-259 3-213 (213)
56 cd03226 ABC_cobalt_CbiO_domain 99.9 8E-28 1.7E-32 217.9 10.1 156 97-256 2-205 (205)
57 PRK11614 livF leucine/isoleuci 99.9 1.7E-27 3.7E-32 220.5 12.5 166 97-266 8-226 (237)
58 TIGR01186 proV glycine betaine 99.9 9.2E-28 2E-32 234.8 11.1 163 103-269 2-222 (363)
59 cd03294 ABC_Pro_Gly_Bertaine T 99.9 9.5E-28 2.1E-32 226.6 10.7 167 97-267 27-251 (269)
60 PRK11831 putative ABC transpor 99.9 2.2E-27 4.8E-32 224.1 13.1 166 97-266 10-233 (269)
61 PRK09493 glnQ glutamine ABC tr 99.9 2.6E-27 5.6E-32 219.7 13.3 166 97-266 4-225 (240)
62 TIGR03410 urea_trans_UrtE urea 99.9 2E-27 4.4E-32 219.0 12.3 164 97-264 3-219 (230)
63 PRK14250 phosphate ABC transpo 99.9 2.1E-27 4.5E-32 220.7 12.4 167 97-267 6-222 (241)
64 COG1137 YhbG ABC-type (unclass 99.9 6.6E-29 1.4E-33 218.0 2.1 166 97-267 7-229 (243)
65 cd03266 ABC_NatA_sodium_export 99.9 1.9E-27 4.2E-32 217.3 11.7 158 97-258 4-217 (218)
66 COG2884 FtsE Predicted ATPase 99.9 9.5E-28 2.1E-32 209.1 9.1 160 97-259 4-219 (223)
67 PRK13637 cbiO cobalt transport 99.9 2.3E-27 5E-32 226.0 12.7 169 97-267 5-235 (287)
68 PRK13641 cbiO cobalt transport 99.9 2.1E-27 4.6E-32 226.2 12.4 168 97-266 5-234 (287)
69 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 2.7E-27 5.8E-32 219.1 12.7 166 97-267 4-222 (236)
70 cd03263 ABC_subfamily_A The AB 99.9 1.9E-27 4.2E-32 217.6 11.6 163 97-264 3-219 (220)
71 PRK10619 histidine/lysine/argi 99.9 2.9E-27 6.2E-32 221.7 12.9 166 97-266 8-241 (257)
72 PRK10895 lipopolysaccharide AB 99.9 2.1E-27 4.6E-32 220.4 11.9 166 97-266 6-226 (241)
73 PRK13634 cbiO cobalt transport 99.9 2.1E-27 4.6E-32 226.5 11.8 169 97-267 5-236 (290)
74 PRK11247 ssuB aliphatic sulfon 99.9 2.3E-27 5.1E-32 222.5 11.7 162 97-262 15-219 (257)
75 PRK13647 cbiO cobalt transport 99.9 2.5E-27 5.5E-32 224.2 12.0 164 97-264 7-225 (274)
76 TIGR00960 3a0501s02 Type II (G 99.9 1.4E-27 3E-32 218.0 9.9 157 97-255 4-216 (216)
77 PRK13643 cbiO cobalt transport 99.9 3.2E-27 7E-32 225.1 12.7 168 97-266 4-233 (288)
78 COG1136 SalX ABC-type antimicr 99.9 1.8E-27 3.8E-32 216.2 10.3 155 97-254 4-219 (226)
79 cd03269 ABC_putative_ATPase Th 99.9 2.5E-27 5.4E-32 215.4 11.3 158 97-258 3-209 (210)
80 PRK13548 hmuV hemin importer A 99.9 3.8E-27 8.3E-32 221.1 12.9 166 97-266 5-230 (258)
81 COG1123 ATPase components of v 99.9 4E-27 8.6E-32 236.1 13.7 174 97-273 283-526 (539)
82 TIGR02315 ABC_phnC phosphonate 99.9 3.1E-27 6.8E-32 219.4 12.1 164 97-264 4-233 (243)
83 TIGR03005 ectoine_ehuA ectoine 99.9 4.7E-27 1E-31 219.6 13.0 167 97-267 3-237 (252)
84 cd03230 ABC_DR_subfamily_A Thi 99.9 2.3E-27 5E-32 209.5 10.2 150 97-254 3-172 (173)
85 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.1E-27 4.5E-32 217.1 10.1 153 97-254 3-217 (218)
86 cd03295 ABC_OpuCA_Osmoprotecti 99.9 5.2E-27 1.1E-31 218.0 12.8 166 97-266 3-225 (242)
87 COG4598 HisP ABC-type histidin 99.9 1.8E-27 3.9E-32 205.7 8.9 170 97-271 9-246 (256)
88 TIGR03740 galliderm_ABC gallid 99.9 4.4E-27 9.5E-32 215.8 12.1 163 97-263 3-210 (223)
89 PRK10070 glycine betaine trans 99.9 4.4E-27 9.6E-32 232.7 12.8 156 111-268 43-256 (400)
90 PRK15079 oligopeptide ABC tran 99.9 5E-27 1.1E-31 227.7 12.8 170 97-268 11-253 (331)
91 cd03260 ABC_PstB_phosphate_tra 99.9 2.8E-27 6.2E-32 217.5 10.3 162 97-263 3-226 (227)
92 PRK11022 dppD dipeptide transp 99.9 5.6E-27 1.2E-31 227.0 12.8 170 97-268 6-245 (326)
93 PRK11308 dppF dipeptide transp 99.9 6.8E-27 1.5E-31 226.5 13.2 170 97-268 8-246 (327)
94 TIGR01257 rim_protein retinal- 99.9 1.7E-27 3.7E-32 269.5 10.2 169 97-267 1940-2160(2272)
95 PRK13652 cbiO cobalt transport 99.9 7.1E-27 1.5E-31 221.5 12.8 166 97-266 6-227 (277)
96 PRK11144 modC molybdate transp 99.9 6.1E-27 1.3E-31 229.1 12.7 165 99-269 5-221 (352)
97 PRK13636 cbiO cobalt transport 99.9 6.2E-27 1.4E-31 222.6 12.4 166 97-266 8-231 (283)
98 PRK11231 fecE iron-dicitrate t 99.9 6.9E-27 1.5E-31 218.9 12.5 166 97-266 5-227 (255)
99 cd03257 ABC_NikE_OppD_transpor 99.9 6.1E-27 1.3E-31 215.2 11.9 159 97-259 4-228 (228)
100 PRK11300 livG leucine/isoleuci 99.9 6.6E-27 1.4E-31 218.8 12.2 166 97-266 8-243 (255)
101 PRK09473 oppD oligopeptide tra 99.9 6.9E-27 1.5E-31 226.7 12.7 171 97-269 15-254 (330)
102 PRK11124 artP arginine transpo 99.9 7.5E-27 1.6E-31 216.9 12.4 164 97-264 5-228 (242)
103 cd03225 ABC_cobalt_CbiO_domain 99.9 3.6E-27 7.9E-32 214.4 9.8 153 97-253 2-210 (211)
104 TIGR03873 F420-0_ABC_ATP propo 99.9 8.1E-27 1.8E-31 218.5 12.4 166 97-266 4-226 (256)
105 cd03300 ABC_PotA_N PotA is an 99.9 1.2E-26 2.7E-31 214.2 13.4 167 97-267 3-221 (232)
106 PRK13646 cbiO cobalt transport 99.9 7.8E-27 1.7E-31 222.2 12.2 169 97-267 5-236 (286)
107 TIGR02673 FtsE cell division A 99.9 5.3E-27 1.1E-31 213.8 10.6 154 97-254 4-214 (214)
108 cd03229 ABC_Class3 This class 99.9 5.7E-27 1.2E-31 208.0 10.4 152 97-253 3-177 (178)
109 cd03235 ABC_Metallic_Cations A 99.9 5.8E-27 1.3E-31 213.4 10.7 157 97-258 2-212 (213)
110 PRK10575 iron-hydroxamate tran 99.9 8.7E-27 1.9E-31 219.5 12.2 166 97-266 14-237 (265)
111 TIGR00972 3a0107s01c2 phosphat 99.9 1.3E-26 2.9E-31 215.9 13.2 165 97-266 4-232 (247)
112 PRK10253 iron-enterobactin tra 99.9 1.2E-26 2.5E-31 218.6 12.8 166 97-266 10-233 (265)
113 PRK15093 antimicrobial peptide 99.9 1.4E-26 3.1E-31 224.6 13.7 170 97-268 6-250 (330)
114 TIGR03415 ABC_choXWV_ATP choli 99.9 4.2E-27 9.2E-32 231.3 10.0 166 99-269 29-257 (382)
115 PRK13644 cbiO cobalt transport 99.9 8.8E-27 1.9E-31 220.6 11.8 166 97-267 4-225 (274)
116 PRK13650 cbiO cobalt transport 99.9 7.9E-27 1.7E-31 221.4 11.5 168 97-267 7-230 (279)
117 PRK11248 tauB taurine transpor 99.9 1E-26 2.2E-31 218.0 12.0 161 97-261 4-215 (255)
118 PRK13631 cbiO cobalt transport 99.9 1.1E-26 2.4E-31 224.3 12.6 168 97-267 24-266 (320)
119 cd03213 ABCG_EPDR ABCG transpo 99.9 1.3E-26 2.9E-31 208.5 12.3 158 97-258 6-193 (194)
120 COG4175 ProV ABC-type proline/ 99.9 6.3E-27 1.4E-31 218.0 10.4 163 112-277 44-265 (386)
121 PRK15112 antimicrobial peptide 99.9 1.5E-26 3.3E-31 218.1 13.0 169 97-267 7-240 (267)
122 cd03246 ABCC_Protease_Secretio 99.9 7.5E-27 1.6E-31 206.3 10.2 154 97-254 3-172 (173)
123 cd03262 ABC_HisP_GlnQ_permease 99.9 7.9E-27 1.7E-31 212.4 10.6 154 97-254 3-212 (213)
124 PRK14247 phosphate ABC transpo 99.9 1.7E-26 3.7E-31 215.5 13.1 166 97-267 6-235 (250)
125 TIGR02858 spore_III_AA stage I 99.9 1.5E-25 3.3E-30 210.7 19.5 217 29-253 1-247 (270)
126 PRK10908 cell division protein 99.9 9.6E-27 2.1E-31 213.4 11.1 157 97-257 4-217 (222)
127 TIGR03411 urea_trans_UrtD urea 99.9 1.3E-26 2.8E-31 215.1 12.0 165 97-266 5-231 (242)
128 COG4604 CeuD ABC-type enteroch 99.9 7.2E-27 1.6E-31 204.7 9.6 164 97-266 4-225 (252)
129 PRK13645 cbiO cobalt transport 99.9 1.5E-26 3.2E-31 220.6 12.3 168 97-266 9-240 (289)
130 PRK13649 cbiO cobalt transport 99.9 1.3E-26 2.9E-31 219.9 11.9 168 97-266 5-234 (280)
131 PRK14242 phosphate transporter 99.9 2E-26 4.3E-31 215.4 12.9 166 97-267 9-238 (253)
132 cd03214 ABC_Iron-Siderophores_ 99.9 8.2E-27 1.8E-31 207.3 9.7 157 97-258 2-179 (180)
133 PRK09544 znuC high-affinity zi 99.9 1.5E-26 3.3E-31 216.2 11.9 165 97-266 7-209 (251)
134 TIGR02142 modC_ABC molybdenum 99.9 1.5E-26 3.2E-31 226.6 12.3 165 99-269 4-224 (354)
135 PRK13639 cbiO cobalt transport 99.9 1.5E-26 3.2E-31 219.2 11.9 166 97-266 4-226 (275)
136 cd03264 ABC_drug_resistance_li 99.9 1.2E-26 2.5E-31 211.2 10.8 157 97-259 3-211 (211)
137 TIGR02769 nickel_nikE nickel i 99.9 1.9E-26 4.1E-31 217.2 12.5 168 97-266 5-240 (265)
138 PRK14268 phosphate ABC transpo 99.9 1.8E-26 3.8E-31 216.6 12.2 166 97-267 15-243 (258)
139 TIGR01978 sufC FeS assembly AT 99.9 2.4E-26 5.2E-31 213.3 12.9 164 97-264 3-232 (243)
140 cd03217 ABC_FeS_Assembly ABC-t 99.9 2.5E-26 5.3E-31 207.7 12.4 161 97-262 3-190 (200)
141 PRK10771 thiQ thiamine transpo 99.9 3.1E-26 6.7E-31 211.5 13.3 165 97-267 4-220 (232)
142 cd03247 ABCC_cytochrome_bd The 99.9 1.5E-26 3.2E-31 205.3 10.6 158 97-259 3-178 (178)
143 cd03292 ABC_FtsE_transporter F 99.9 1.1E-26 2.4E-31 211.5 10.0 154 97-254 3-213 (214)
144 PRK14273 phosphate ABC transpo 99.9 2.7E-26 5.8E-31 214.7 12.9 166 97-267 10-239 (254)
145 PRK13635 cbiO cobalt transport 99.9 1.7E-26 3.7E-31 219.1 11.7 167 97-266 8-229 (279)
146 PRK15439 autoinducer 2 ABC tra 99.9 1.4E-26 3E-31 237.2 11.9 166 97-266 14-229 (510)
147 PRK09984 phosphonate/organopho 99.9 2.2E-26 4.8E-31 216.3 12.3 164 97-264 7-240 (262)
148 cd03252 ABCC_Hemolysin The ABC 99.9 1.9E-26 4.2E-31 213.4 11.6 167 97-267 3-226 (237)
149 PRK11701 phnK phosphonate C-P 99.9 3.4E-26 7.4E-31 214.6 13.3 167 97-267 9-242 (258)
150 TIGR00968 3a0106s01 sulfate AB 99.9 3.2E-26 6.8E-31 212.2 13.0 166 97-266 3-220 (237)
151 TIGR02323 CP_lyasePhnK phospho 99.9 3.6E-26 7.7E-31 213.7 13.4 165 97-266 6-238 (253)
152 cd03215 ABC_Carb_Monos_II This 99.9 1.5E-26 3.3E-31 205.9 10.0 149 97-254 7-181 (182)
153 PRK14267 phosphate ABC transpo 99.9 3.9E-26 8.4E-31 213.4 13.2 166 97-267 7-238 (253)
154 TIGR02211 LolD_lipo_ex lipopro 99.9 1.7E-26 3.7E-31 211.4 10.5 157 97-256 4-220 (221)
155 PRK14248 phosphate ABC transpo 99.9 4.3E-26 9.3E-31 215.1 13.4 166 97-267 24-253 (268)
156 COG1123 ATPase components of v 99.9 2E-26 4.3E-31 231.1 11.6 173 97-272 8-250 (539)
157 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1.9E-26 4.2E-31 197.8 10.0 138 97-254 3-144 (144)
158 cd03298 ABC_ThiQ_thiamine_tran 99.9 3.2E-26 6.8E-31 208.3 11.9 156 97-258 3-210 (211)
159 PRK11629 lolD lipoprotein tran 99.9 2.5E-26 5.3E-31 212.3 11.3 161 97-260 8-228 (233)
160 cd03232 ABC_PDR_domain2 The pl 99.9 3.2E-26 7E-31 205.6 11.7 159 97-259 6-192 (192)
161 PRK10418 nikD nickel transport 99.9 4.9E-26 1.1E-30 213.0 13.4 166 97-267 7-231 (254)
162 PRK13640 cbiO cobalt transport 99.9 2.4E-26 5.2E-31 218.4 11.4 168 97-267 8-233 (282)
163 cd03299 ABC_ModC_like Archeal 99.9 5.8E-26 1.3E-30 210.2 13.3 165 97-266 3-219 (235)
164 PRK14256 phosphate ABC transpo 99.9 5.7E-26 1.2E-30 212.3 13.3 167 97-268 7-238 (252)
165 TIGR01277 thiQ thiamine ABC tr 99.9 4.7E-26 1E-30 207.6 12.1 158 97-260 3-212 (213)
166 cd03297 ABC_ModC_molybdenum_tr 99.9 3.8E-26 8.3E-31 208.3 11.4 154 99-259 5-214 (214)
167 PRK10584 putative ABC transpor 99.9 3.7E-26 8.1E-31 210.2 11.3 158 97-257 9-226 (228)
168 PRK13648 cbiO cobalt transport 99.9 3.8E-26 8.1E-31 215.6 11.6 167 97-266 10-231 (269)
169 PRK10744 pstB phosphate transp 99.9 7E-26 1.5E-30 212.7 13.3 166 97-267 16-245 (260)
170 PRK14249 phosphate ABC transpo 99.9 7.4E-26 1.6E-30 211.4 13.3 166 97-267 7-236 (251)
171 PRK14272 phosphate ABC transpo 99.9 7.2E-26 1.6E-30 211.4 13.3 166 97-267 7-237 (252)
172 PRK15056 manganese/iron transp 99.9 6.4E-26 1.4E-30 214.4 13.0 165 97-266 9-230 (272)
173 COG5008 PilU Tfp pilus assembl 99.9 3.5E-25 7.6E-30 201.6 17.0 211 26-246 17-245 (375)
174 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.4E-26 3.1E-31 212.8 7.9 158 97-259 25-224 (224)
175 PRK14274 phosphate ABC transpo 99.9 6.2E-26 1.3E-30 212.9 12.4 174 85-267 7-244 (259)
176 PRK14245 phosphate ABC transpo 99.9 7.3E-26 1.6E-30 211.3 12.7 166 97-267 6-235 (250)
177 PRK13633 cobalt transporter AT 99.9 4.9E-26 1.1E-30 216.1 11.7 168 97-267 7-234 (280)
178 PRK14270 phosphate ABC transpo 99.9 9.9E-26 2.1E-30 210.5 13.3 166 97-267 7-236 (251)
179 PRK14235 phosphate transporter 99.9 8.1E-26 1.7E-30 213.2 12.7 166 97-267 22-252 (267)
180 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 5.2E-26 1.1E-30 210.6 11.2 166 97-266 3-226 (238)
181 cd03251 ABCC_MsbA MsbA is an e 99.9 5.6E-26 1.2E-30 209.8 11.3 166 97-266 3-225 (234)
182 COG4586 ABC-type uncharacteriz 99.9 4.4E-26 9.5E-31 208.7 10.3 154 110-266 38-246 (325)
183 COG4608 AppF ABC-type oligopep 99.9 6.6E-26 1.4E-30 209.1 11.6 169 97-270 7-203 (268)
184 cd03254 ABCC_Glucan_exporter_l 99.9 5.8E-26 1.3E-30 209.0 11.2 164 97-266 5-226 (229)
185 PRK14240 phosphate transporter 99.9 9.6E-26 2.1E-30 210.4 12.7 166 97-267 6-235 (250)
186 PRK14239 phosphate transporter 99.9 1.1E-25 2.4E-30 210.2 13.0 166 97-267 8-237 (252)
187 cd03228 ABCC_MRP_Like The MRP 99.9 3.9E-26 8.5E-31 201.3 9.5 152 97-253 3-170 (171)
188 PRK14259 phosphate ABC transpo 99.9 9.3E-26 2E-30 213.0 12.6 166 97-267 16-254 (269)
189 PRK14246 phosphate ABC transpo 99.9 1.1E-25 2.4E-30 211.2 12.9 167 97-268 13-243 (257)
190 PRK14262 phosphate ABC transpo 99.9 1.1E-25 2.4E-30 210.0 12.9 165 97-266 6-234 (250)
191 PRK14269 phosphate ABC transpo 99.9 1E-25 2.2E-30 209.9 12.5 166 97-267 5-231 (246)
192 PRK09700 D-allose transporter 99.9 4E-26 8.7E-31 233.8 10.6 165 97-265 8-233 (510)
193 cd03222 ABC_RNaseL_inhibitor T 99.9 7.4E-26 1.6E-30 200.5 10.8 146 99-263 5-160 (177)
194 PRK10762 D-ribose transporter 99.9 3.9E-26 8.5E-31 233.4 10.3 164 97-264 7-228 (501)
195 PRK13549 xylose transporter AT 99.9 3.9E-26 8.5E-31 233.7 10.3 164 97-264 8-230 (506)
196 PRK14241 phosphate transporter 99.9 1.4E-25 3.1E-30 210.3 13.1 166 97-267 7-243 (258)
197 PRK14265 phosphate ABC transpo 99.9 1E-25 2.3E-30 213.2 12.1 166 97-267 23-259 (274)
198 PRK13547 hmuV hemin importer A 99.9 9.8E-26 2.1E-30 213.1 11.8 166 97-266 4-244 (272)
199 PRK13632 cbiO cobalt transport 99.9 9.7E-26 2.1E-30 213.1 11.7 167 97-266 10-231 (271)
200 PRK10419 nikE nickel transport 99.9 1.1E-25 2.4E-30 212.4 11.8 166 97-266 6-241 (268)
201 PRK14238 phosphate transporter 99.9 1.6E-25 3.5E-30 211.6 12.8 166 97-267 27-256 (271)
202 PRK13642 cbiO cobalt transport 99.9 1.3E-25 2.7E-30 213.0 12.0 168 97-267 7-230 (277)
203 PRK10938 putative molybdenum t 99.9 1.2E-25 2.7E-30 229.1 12.8 165 97-266 6-224 (490)
204 cd03253 ABCC_ATM1_transporter 99.9 1.2E-25 2.6E-30 207.9 11.4 164 97-266 3-224 (236)
205 cd03223 ABCD_peroxisomal_ALDP 99.9 1.6E-25 3.4E-30 196.6 11.6 148 97-252 3-162 (166)
206 COG3840 ThiQ ABC-type thiamine 99.9 1.8E-25 3.9E-30 193.7 11.6 164 97-267 4-220 (231)
207 PRK10982 galactose/methyl gala 99.9 7.4E-26 1.6E-30 230.8 10.8 163 98-264 2-221 (491)
208 PRK14253 phosphate ABC transpo 99.9 1.4E-25 3E-30 209.3 11.7 165 97-266 6-233 (249)
209 PRK14251 phosphate ABC transpo 99.9 2.2E-25 4.7E-30 208.1 13.0 166 97-267 7-236 (251)
210 TIGR03269 met_CoM_red_A2 methy 99.9 1.7E-25 3.7E-30 229.7 13.3 166 97-267 3-259 (520)
211 PRK14258 phosphate ABC transpo 99.9 2.8E-25 6.1E-30 208.8 13.4 167 97-267 10-246 (261)
212 PRK10261 glutathione transport 99.9 1.6E-25 3.6E-30 234.2 13.0 170 97-268 316-555 (623)
213 PRK14236 phosphate transporter 99.9 2.3E-25 5.1E-30 210.6 12.7 165 97-266 28-256 (272)
214 PRK14255 phosphate ABC transpo 99.9 2.9E-25 6.3E-30 207.4 13.2 166 97-267 8-237 (252)
215 cd03234 ABCG_White The White s 99.9 2E-25 4.3E-30 205.3 11.9 163 95-259 4-226 (226)
216 PRK09580 sufC cysteine desulfu 99.9 2.6E-25 5.6E-30 207.1 12.5 164 97-264 4-233 (248)
217 PRK14271 phosphate ABC transpo 99.9 2.5E-25 5.4E-30 210.9 12.3 166 97-267 24-252 (276)
218 PRK14261 phosphate ABC transpo 99.9 2.8E-25 6E-30 207.7 12.4 166 97-267 9-238 (253)
219 PRK14275 phosphate ABC transpo 99.9 3E-25 6.5E-30 211.4 12.8 166 97-267 42-271 (286)
220 TIGR02770 nickel_nikD nickel i 99.9 2.5E-25 5.4E-30 205.3 11.8 153 112-266 2-215 (230)
221 PRK14237 phosphate transporter 99.9 2.9E-25 6.3E-30 209.4 12.4 181 73-266 7-251 (267)
222 cd03369 ABCC_NFT1 Domain 2 of 99.9 2.3E-25 5.1E-30 202.1 11.2 160 97-260 9-206 (207)
223 TIGR01257 rim_protein retinal- 99.9 6.3E-25 1.4E-29 248.8 17.0 165 97-266 931-1149(2272)
224 cd03245 ABCC_bacteriocin_expor 99.9 2.1E-25 4.5E-30 204.1 10.7 158 97-258 5-219 (220)
225 PRK15134 microcin C ABC transp 99.9 2.6E-25 5.6E-30 228.8 12.6 169 97-267 8-247 (529)
226 PRK14243 phosphate transporter 99.9 3.9E-25 8.4E-30 208.2 12.8 166 97-267 13-249 (264)
227 PRK14260 phosphate ABC transpo 99.9 4.2E-25 9.1E-30 207.3 12.8 166 97-267 10-244 (259)
228 PRK14244 phosphate ABC transpo 99.9 4.2E-25 9.1E-30 206.3 12.6 166 97-267 8-238 (251)
229 PRK10261 glutathione transport 99.9 1.6E-25 3.5E-30 234.2 10.9 169 97-267 15-259 (623)
230 PRK14254 phosphate ABC transpo 99.9 4.8E-25 1E-29 209.8 13.1 166 97-266 42-269 (285)
231 PRK15064 ABC transporter ATP-b 99.9 4.2E-25 9E-30 227.3 13.4 165 97-265 4-241 (530)
232 cd03233 ABC_PDR_domain1 The pl 99.9 3.7E-25 8E-30 200.3 11.4 160 97-259 6-202 (202)
233 PRK13545 tagH teichoic acids e 99.9 4.2E-25 9.2E-30 222.3 13.0 169 97-268 24-234 (549)
234 PRK13546 teichoic acids export 99.9 7.1E-25 1.5E-29 206.4 13.7 154 111-267 39-233 (264)
235 PRK14257 phosphate ABC transpo 99.9 3.8E-25 8.3E-30 214.4 12.2 170 97-269 83-316 (329)
236 CHL00131 ycf16 sulfate ABC tra 99.9 5.1E-25 1.1E-29 205.7 12.3 163 97-263 10-238 (252)
237 TIGR02525 plasmid_TraJ plasmid 99.9 1.4E-23 3E-28 205.3 22.9 223 12-242 9-267 (372)
238 TIGR03608 L_ocin_972_ABC putat 99.9 2.4E-25 5.3E-30 201.5 9.8 146 97-246 1-204 (206)
239 TIGR02633 xylG D-xylose ABC tr 99.9 3E-25 6.4E-30 226.9 10.9 164 97-264 4-228 (500)
240 cd03267 ABC_NatA_like Similar 99.9 3.1E-25 6.6E-30 205.5 9.9 154 102-259 29-236 (236)
241 PRK14263 phosphate ABC transpo 99.9 6.7E-25 1.5E-29 206.3 12.3 166 97-267 11-246 (261)
242 PRK14252 phosphate ABC transpo 99.9 7.3E-25 1.6E-29 206.4 12.6 165 97-266 19-249 (265)
243 cd03244 ABCC_MRP_domain2 Domai 99.9 5.2E-25 1.1E-29 201.6 10.8 160 97-260 5-220 (221)
244 PRK11288 araG L-arabinose tran 99.9 4.3E-25 9.3E-30 225.8 11.4 161 97-261 7-224 (501)
245 TIGR01184 ntrCD nitrate transp 99.9 3.1E-25 6.8E-30 204.7 9.3 149 113-264 2-202 (230)
246 PRK14264 phosphate ABC transpo 99.9 1.2E-24 2.5E-29 209.1 13.3 166 97-267 48-290 (305)
247 PRK10247 putative ABC transpor 99.9 3.7E-25 8.1E-30 203.5 9.2 158 97-259 10-220 (225)
248 COG2274 SunT ABC-type bacterio 99.9 6.5E-25 1.4E-29 229.9 12.1 168 97-267 474-697 (709)
249 cd03289 ABCC_CFTR2 The CFTR su 99.9 1E-24 2.2E-29 206.4 12.2 166 97-267 5-226 (275)
250 PRK13543 cytochrome c biogenes 99.9 6.4E-25 1.4E-29 200.4 10.5 148 97-246 14-208 (214)
251 PRK11819 putative ABC transpor 99.9 1.3E-24 2.9E-29 224.7 13.8 165 97-265 9-249 (556)
252 PRK14266 phosphate ABC transpo 99.9 1.3E-24 2.8E-29 202.8 12.3 166 97-267 6-235 (250)
253 cd03231 ABC_CcmA_heme_exporter 99.9 1.4E-24 3E-29 196.4 12.0 148 97-246 3-196 (201)
254 cd03288 ABCC_SUR2 The SUR doma 99.9 1.4E-24 3.1E-29 203.5 12.1 166 97-266 22-243 (257)
255 cd03250 ABCC_MRP_domain1 Domai 99.9 9.2E-25 2E-29 197.7 10.2 154 97-253 3-203 (204)
256 PRK13538 cytochrome c biogenes 99.9 1.1E-24 2.5E-29 197.2 10.8 146 97-245 4-199 (204)
257 TIGR03269 met_CoM_red_A2 methy 99.9 1.3E-24 2.8E-29 223.2 12.2 167 97-266 282-517 (520)
258 PRK15064 ABC transporter ATP-b 99.9 1.9E-24 4.2E-29 222.4 13.5 166 97-266 322-525 (530)
259 TIGR02324 CP_lyasePhnL phospho 99.9 2.1E-24 4.5E-29 198.1 12.3 149 97-246 4-220 (224)
260 PRK15134 microcin C ABC transp 99.9 1.2E-24 2.7E-29 223.8 12.0 168 97-267 278-516 (529)
261 PRK03695 vitamin B12-transport 99.9 9.8E-25 2.1E-29 203.6 10.1 160 97-266 3-222 (248)
262 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 2.5E-24 5.4E-29 222.6 13.9 166 97-266 7-248 (552)
263 TIGR02524 dot_icm_DotB Dot/Icm 99.9 6.8E-23 1.5E-27 200.1 23.1 227 12-246 3-257 (358)
264 TIGR01420 pilT_fam pilus retra 99.9 6.7E-23 1.5E-27 199.9 22.7 211 26-246 12-240 (343)
265 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 2.5E-24 5.4E-29 228.8 13.5 167 97-266 480-700 (710)
266 TIGR02982 heterocyst_DevA ABC 99.9 1.4E-24 3E-29 198.9 10.0 156 97-255 4-219 (220)
267 COG1134 TagH ABC-type polysacc 99.9 2.1E-24 4.6E-29 195.7 11.0 157 111-270 42-240 (249)
268 PRK10636 putative ABC transpor 99.9 2E-24 4.4E-29 226.4 12.5 165 97-265 315-516 (638)
269 cd00267 ABC_ATPase ABC (ATP-bi 99.9 2.1E-24 4.6E-29 187.4 9.9 147 97-253 2-156 (157)
270 COG4161 ArtP ABC-type arginine 99.9 4.8E-24 1E-28 181.6 11.8 163 97-264 5-228 (242)
271 PRK13549 xylose transporter AT 99.9 1.1E-24 2.4E-29 223.0 8.9 164 97-264 262-492 (506)
272 PLN03211 ABC transporter G-25; 99.9 4E-24 8.6E-29 224.4 12.6 166 97-266 71-296 (659)
273 COG0488 Uup ATPase components 99.9 9.6E-24 2.1E-28 214.7 14.6 163 97-264 6-238 (530)
274 TIGR03771 anch_rpt_ABC anchore 99.9 5.6E-24 1.2E-28 195.5 11.7 146 118-266 2-201 (223)
275 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 4.3E-24 9.4E-29 226.1 12.5 167 97-266 454-673 (686)
276 cd03291 ABCC_CFTR1 The CFTR su 99.9 1.2E-23 2.6E-28 199.7 14.2 163 97-266 42-247 (282)
277 PRK13540 cytochrome c biogenes 99.9 9.5E-24 2.1E-28 190.6 12.6 144 97-244 4-195 (200)
278 cd03248 ABCC_TAP TAP, the Tran 99.9 2.3E-24 4.9E-29 198.1 8.7 154 97-254 14-225 (226)
279 TIGR01189 ccmA heme ABC export 99.9 9E-24 2E-28 190.4 12.4 138 97-236 3-188 (198)
280 COG1129 MglA ABC-type sugar tr 99.9 3.1E-24 6.7E-29 214.0 10.2 160 97-261 11-229 (500)
281 COG4172 ABC-type uncharacteriz 99.9 1.8E-23 3.8E-28 200.3 14.4 160 111-274 302-524 (534)
282 cd03290 ABCC_SUR1_N The SUR do 99.9 6.1E-24 1.3E-28 194.3 10.8 153 97-253 3-217 (218)
283 PRK10636 putative ABC transpor 99.9 7.6E-24 1.6E-28 222.1 12.6 165 97-265 4-235 (638)
284 PRK15177 Vi polysaccharide exp 99.9 1.2E-23 2.6E-28 192.0 12.1 152 112-266 3-192 (213)
285 COG4525 TauB ABC-type taurine 99.9 1.3E-23 2.8E-28 184.0 11.6 163 97-262 6-220 (259)
286 PRK13539 cytochrome c biogenes 99.9 1.4E-23 3E-28 190.6 12.3 145 97-246 5-196 (207)
287 PRK09700 D-allose transporter 99.9 4.6E-24 1E-28 218.6 10.0 159 97-261 268-493 (510)
288 TIGR02633 xylG D-xylose ABC tr 99.9 3.7E-24 8.1E-29 218.8 9.2 162 97-262 260-488 (500)
289 PRK11147 ABC transporter ATPas 99.9 1.2E-23 2.6E-28 220.7 13.3 164 97-265 6-242 (635)
290 TIGR01842 type_I_sec_PrtD type 99.9 1.8E-23 3.9E-28 215.9 14.1 166 97-265 319-541 (544)
291 PRK11176 lipid transporter ATP 99.9 1E-23 2.3E-28 219.2 12.4 168 97-267 344-568 (582)
292 COG4148 ModC ABC-type molybdat 99.9 5.9E-24 1.3E-28 195.2 9.0 152 114-267 16-219 (352)
293 cd03237 ABC_RNaseL_inhibitor_d 99.9 1.4E-23 3E-28 195.7 11.7 152 112-265 15-206 (246)
294 COG4674 Uncharacterized ABC-ty 99.9 2.2E-24 4.9E-29 188.8 5.6 164 97-267 8-236 (249)
295 COG1119 ModF ABC-type molybden 99.9 8.2E-24 1.8E-28 191.8 9.3 158 97-259 34-255 (257)
296 TIGR03375 type_I_sec_LssB type 99.9 2.2E-23 4.7E-28 221.1 13.3 166 97-266 466-688 (694)
297 COG3845 ABC-type uncharacteriz 99.9 8E-24 1.7E-28 207.7 9.1 159 97-260 7-223 (501)
298 COG4107 PhnK ABC-type phosphon 99.9 1.4E-23 3E-28 180.9 8.7 168 97-269 9-244 (258)
299 KOG0058 Peptide exporter, ABC 99.9 2.6E-23 5.7E-28 212.0 12.3 169 97-268 468-693 (716)
300 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 3.2E-23 6.9E-28 214.4 13.2 165 97-265 325-530 (552)
301 PRK13409 putative ATPase RIL; 99.9 1.6E-23 3.4E-28 217.3 10.9 158 97-260 343-536 (590)
302 COG4167 SapF ABC-type antimicr 99.9 1.5E-23 3.2E-28 182.0 8.9 167 108-277 25-250 (267)
303 COG4172 ABC-type uncharacteriz 99.9 3.6E-23 7.8E-28 198.2 12.3 174 97-272 9-253 (534)
304 PLN03073 ABC transporter F fam 99.9 3.3E-23 7.2E-28 218.8 13.4 164 97-264 511-712 (718)
305 COG4181 Predicted ABC-type tra 99.9 1.7E-23 3.7E-28 179.8 9.0 157 98-257 10-226 (228)
306 PRK11819 putative ABC transpor 99.9 3.9E-23 8.5E-28 213.8 13.6 166 97-266 327-533 (556)
307 PRK10790 putative multidrug tr 99.9 3.6E-23 7.9E-28 215.6 13.4 165 97-266 343-563 (592)
308 PRK11174 cysteine/glutathione 99.9 2.2E-23 4.8E-28 217.0 11.7 164 97-267 352-573 (588)
309 cd03238 ABC_UvrA The excision 99.9 8.5E-24 1.8E-28 187.2 7.2 133 110-253 9-164 (176)
310 TIGR00958 3a01208 Conjugate Tr 99.9 2.5E-23 5.5E-28 220.9 12.1 168 97-267 481-703 (711)
311 COG4988 CydD ABC-type transpor 99.9 2.3E-23 5E-28 208.6 10.8 164 98-267 324-544 (559)
312 PRK13541 cytochrome c biogenes 99.9 5.2E-23 1.1E-27 185.1 12.1 140 97-240 4-188 (195)
313 TIGR01187 potA spermidine/putr 99.9 1.9E-23 4.2E-28 202.3 9.9 141 127-269 1-193 (325)
314 PRK11160 cysteine/glutathione 99.9 3E-23 6.5E-28 215.5 11.9 167 97-267 341-563 (574)
315 COG4618 ArpD ABC-type protease 99.9 1.8E-23 4E-28 205.2 9.7 167 97-267 337-561 (580)
316 TIGR01166 cbiO cobalt transpor 99.9 3.4E-23 7.4E-28 185.4 10.5 126 112-237 8-189 (190)
317 PRK15439 autoinducer 2 ABC tra 99.9 1.5E-23 3.2E-28 214.9 9.1 152 112-265 279-491 (510)
318 TIGR01193 bacteriocin_ABC ABC- 99.9 2.8E-23 6E-28 220.7 11.5 166 97-266 476-697 (708)
319 PRK11288 araG L-arabinose tran 99.9 1.4E-23 2.9E-28 214.7 8.7 152 111-265 268-484 (501)
320 PRK10789 putative multidrug tr 99.9 3.9E-23 8.5E-28 214.4 11.9 166 97-266 316-538 (569)
321 TIGR01192 chvA glucan exporter 99.9 3.7E-23 8E-28 215.2 11.6 165 97-266 337-558 (585)
322 cd03236 ABC_RNaseL_inhibitor_d 99.9 2.1E-23 4.5E-28 195.5 8.7 153 99-257 5-218 (255)
323 KOG0055 Multidrug/pheromone ex 99.9 2.7E-23 5.8E-28 222.6 10.3 167 97-267 353-577 (1228)
324 PRK10938 putative molybdenum t 99.9 2.7E-23 5.9E-28 212.0 9.7 158 97-258 263-484 (490)
325 TIGR01846 type_I_sec_HlyB type 99.9 7.1E-23 1.5E-27 217.1 13.1 166 97-266 458-680 (694)
326 PRK10982 galactose/methyl gala 99.9 2.3E-23 4.9E-28 212.6 9.0 159 97-262 253-476 (491)
327 PRK13657 cyclic beta-1,2-gluca 99.9 9.1E-23 2E-27 212.5 13.6 166 97-266 337-558 (588)
328 PRK11147 ABC transporter ATPas 99.9 4.9E-23 1.1E-27 216.1 11.6 164 97-264 322-526 (635)
329 KOG0057 Mitochondrial Fe/S clu 99.9 6.2E-23 1.3E-27 203.2 11.0 165 97-266 354-574 (591)
330 PRK10762 D-ribose transporter 99.9 2.6E-23 5.7E-28 212.6 8.5 151 112-264 268-482 (501)
331 COG1132 MdlB ABC-type multidru 99.9 7.2E-23 1.6E-27 212.4 11.7 164 97-267 331-553 (567)
332 COG4987 CydC ABC-type transpor 99.9 7E-23 1.5E-27 202.6 10.9 165 97-266 339-561 (573)
333 TIGR02203 MsbA_lipidA lipid A 99.9 1.8E-22 3.9E-27 209.4 13.2 166 97-266 333-556 (571)
334 PLN03073 ABC transporter F fam 99.9 2.2E-22 4.7E-27 212.6 14.0 163 97-264 180-429 (718)
335 TIGR02204 MsbA_rel ABC transpo 99.9 3E-22 6.6E-27 208.0 12.2 166 97-266 340-563 (576)
336 PRK10535 macrolide transporter 99.9 3.2E-22 6.9E-27 210.3 11.3 166 97-265 7-231 (648)
337 TIGR00955 3a01204 The Eye Pigm 99.9 8.4E-22 1.8E-26 206.1 12.4 154 111-266 40-256 (617)
338 PRK13764 ATPase; Provisional 99.9 1.2E-20 2.7E-25 193.5 20.6 205 26-243 142-367 (602)
339 PLN03232 ABC transporter C fam 99.9 1E-21 2.2E-26 222.4 13.9 168 97-267 1237-1459(1495)
340 PLN03130 ABC transporter C fam 99.9 8.9E-22 1.9E-26 223.5 13.4 168 97-267 1240-1462(1622)
341 KOG0059 Lipid exporter ABCA1 a 99.9 1.3E-21 2.8E-26 211.5 11.9 167 97-266 567-787 (885)
342 TIGR01194 cyc_pep_trnsptr cycl 99.9 1.6E-21 3.5E-26 201.8 11.2 157 97-258 340-551 (555)
343 PRK13409 putative ATPase RIL; 99.9 7.4E-22 1.6E-26 204.8 8.7 147 99-252 78-286 (590)
344 PRK10522 multidrug transporter 99.9 1.4E-21 3.1E-26 201.9 10.6 158 97-258 325-530 (547)
345 PTZ00265 multidrug resistance 99.9 1.7E-21 3.7E-26 219.3 11.3 167 97-266 1168-1452(1466)
346 COG0488 Uup ATPase components 99.8 2.9E-21 6.3E-26 196.6 11.1 163 97-264 324-523 (530)
347 TIGR00957 MRP_assoc_pro multi 99.8 4.8E-21 1E-25 217.2 13.7 168 97-267 1287-1509(1522)
348 cd03270 ABC_UvrA_I The excisio 99.8 3.2E-21 6.9E-26 177.6 10.0 77 180-259 135-226 (226)
349 PTZ00265 multidrug resistance 99.8 2.9E-21 6.2E-26 217.5 11.5 153 97-253 385-655 (1466)
350 PTZ00243 ABC transporter; Prov 99.8 6.2E-21 1.3E-25 216.2 13.8 166 97-266 1311-1533(1560)
351 COG0396 sufC Cysteine desulfur 99.8 6.5E-21 1.4E-25 171.2 11.0 164 97-265 6-232 (251)
352 PRK10436 hypothetical protein; 99.8 1.9E-19 4.1E-24 180.9 22.7 200 26-241 98-328 (462)
353 TIGR02857 CydD thiol reductant 99.8 4.9E-21 1.1E-25 197.1 11.3 148 97-246 323-527 (529)
354 TIGR00957 MRP_assoc_pro multi 99.8 6.7E-21 1.5E-25 216.1 13.3 167 97-266 639-850 (1522)
355 TIGR00956 3a01205 Pleiotropic 99.8 5.9E-21 1.3E-25 214.6 12.4 165 97-263 762-990 (1394)
356 TIGR00954 3a01203 Peroxysomal 99.8 4.9E-21 1.1E-25 201.6 11.1 150 97-251 454-652 (659)
357 TIGR02868 CydC thiol reductant 99.8 8E-21 1.7E-25 195.5 12.0 138 97-235 337-529 (529)
358 PLN03232 ABC transporter C fam 99.8 8.7E-21 1.9E-25 214.9 12.9 167 97-266 617-828 (1495)
359 TIGR02533 type_II_gspE general 99.8 3.1E-19 6.6E-24 181.0 22.0 204 26-246 122-356 (486)
360 COG2804 PulE Type II secretory 99.8 1.5E-19 3.3E-24 179.2 19.2 201 26-242 138-369 (500)
361 TIGR02788 VirB11 P-type DNA tr 99.8 6.9E-19 1.5E-23 169.3 23.1 227 25-265 4-280 (308)
362 TIGR01271 CFTR_protein cystic 99.8 1.7E-20 3.7E-25 212.3 13.2 166 97-266 1220-1440(1490)
363 PLN03130 ABC transporter C fam 99.8 2E-20 4.4E-25 212.5 13.3 167 97-266 617-828 (1622)
364 COG4619 ABC-type uncharacteriz 99.8 5.1E-21 1.1E-25 164.1 6.2 135 111-246 18-205 (223)
365 KOG0055 Multidrug/pheromone ex 99.8 2.1E-20 4.6E-25 200.5 12.3 167 97-266 990-1213(1228)
366 TIGR02538 type_IV_pilB type IV 99.8 3.2E-19 6.8E-24 184.4 20.6 202 26-241 195-426 (564)
367 PLN03140 ABC transporter G fam 99.8 2.5E-20 5.4E-25 209.4 11.2 150 111-262 895-1106(1470)
368 PTZ00243 ABC transporter; Prov 99.8 4.7E-20 1E-24 209.1 11.5 154 111-267 675-871 (1560)
369 TIGR01271 CFTR_protein cystic 99.8 5.3E-20 1.1E-24 208.3 11.6 152 111-266 441-636 (1490)
370 KOG0061 Transporter, ABC super 99.8 2.7E-19 5.8E-24 186.3 15.9 154 110-265 44-259 (613)
371 COG1101 PhnK ABC-type uncharac 99.8 8.3E-20 1.8E-24 162.5 9.2 163 97-262 4-234 (263)
372 TIGR00956 3a01205 Pleiotropic 99.8 1.2E-19 2.5E-24 204.2 12.2 152 112-265 77-299 (1394)
373 COG4136 ABC-type uncharacteriz 99.8 2.3E-19 4.9E-24 151.4 10.4 141 97-239 5-199 (213)
374 PLN03140 ABC transporter G fam 99.8 1E-19 2.2E-24 204.5 10.4 154 111-266 180-427 (1470)
375 KOG0062 ATPase component of AB 99.8 3.5E-19 7.6E-24 175.3 11.7 163 97-266 83-285 (582)
376 PF00437 T2SE: Type II/IV secr 99.8 1.5E-18 3.3E-23 163.7 15.7 214 19-246 4-242 (270)
377 KOG0927 Predicted transporter 99.8 6.5E-19 1.4E-23 174.3 12.9 163 97-264 78-307 (614)
378 COG4133 CcmA ABC-type transpor 99.8 4.5E-19 9.7E-24 154.8 9.9 136 98-236 6-191 (209)
379 KOG0056 Heavy metal exporter H 99.8 2.8E-19 6E-24 174.8 9.3 166 97-266 540-761 (790)
380 cd03271 ABC_UvrA_II The excisi 99.8 7.1E-19 1.5E-23 164.9 11.1 79 180-261 167-261 (261)
381 COG4778 PhnL ABC-type phosphon 99.8 8.1E-19 1.8E-23 150.9 9.4 136 110-246 25-223 (235)
382 PRK13900 type IV secretion sys 99.8 6.6E-17 1.4E-21 156.7 22.1 218 18-246 14-280 (332)
383 COG4138 BtuD ABC-type cobalami 99.8 6.8E-19 1.5E-23 152.0 7.2 151 112-266 15-221 (248)
384 cd03278 ABC_SMC_barmotin Barmo 99.8 2E-18 4.3E-23 155.8 8.9 130 113-246 14-186 (197)
385 TIGR02782 TrbB_P P-type conjug 99.7 1.2E-16 2.5E-21 153.0 20.7 209 24-246 15-249 (299)
386 PRK13851 type IV secretion sys 99.7 1.3E-16 2.8E-21 155.0 20.5 211 19-242 14-278 (344)
387 KOG0054 Multidrug resistance-a 99.7 1E-17 2.2E-22 183.6 12.5 167 97-267 1141-1363(1381)
388 cd03279 ABC_sbcCD SbcCD and ot 99.7 4.1E-18 9E-23 155.4 8.0 132 120-253 26-209 (213)
389 PF00005 ABC_tran: ABC transpo 99.7 2E-18 4.3E-23 145.9 5.1 99 112-211 1-137 (137)
390 KOG0054 Multidrug resistance-a 99.7 1.7E-17 3.6E-22 181.9 12.8 165 98-266 522-731 (1381)
391 COG5265 ATM1 ABC-type transpor 99.7 8.7E-18 1.9E-22 162.2 8.9 166 97-267 265-487 (497)
392 TIGR03819 heli_sec_ATPase heli 99.7 4.6E-16 9.9E-21 151.3 20.8 208 25-242 61-295 (340)
393 PRK13833 conjugal transfer pro 99.7 5E-16 1.1E-20 149.4 19.9 214 17-246 20-260 (323)
394 cd01129 PulE-GspE PulE/GspE Th 99.7 3E-16 6.5E-21 147.7 17.6 159 73-242 18-191 (264)
395 KOG0927 Predicted transporter 99.7 3.5E-17 7.7E-22 162.1 11.5 166 97-265 392-595 (614)
396 PRK13894 conjugal transfer ATP 99.7 1.3E-15 2.9E-20 146.7 21.2 211 19-246 26-264 (319)
397 COG4178 ABC-type uncharacteriz 99.7 7E-17 1.5E-21 164.5 11.6 148 97-246 395-584 (604)
398 cd03280 ABC_MutS2 MutS2 homolo 99.7 2.1E-17 4.4E-22 149.4 6.5 137 112-258 17-171 (200)
399 cd03272 ABC_SMC3_euk Eukaryoti 99.7 3.8E-17 8.2E-22 151.7 7.2 66 179-246 155-231 (243)
400 cd01131 PilT Pilus retraction 99.7 4.1E-16 8.8E-21 140.8 12.7 118 123-246 2-119 (198)
401 COG1245 Predicted ATPase, RNas 99.7 1.1E-16 2.4E-21 155.9 9.3 130 117-246 362-527 (591)
402 TIGR00630 uvra excinuclease AB 99.7 5.3E-16 1.1E-20 167.0 13.1 81 181-264 827-923 (924)
403 cd03240 ABC_Rad50 The catalyti 99.6 3.6E-16 7.8E-21 141.8 8.3 126 119-246 20-193 (204)
404 cd03274 ABC_SMC4_euk Eukaryoti 99.6 2.8E-16 6E-21 143.4 7.5 65 180-246 125-200 (212)
405 PRK00349 uvrA excinuclease ABC 99.6 1.1E-15 2.3E-20 165.0 12.9 85 180-267 828-928 (943)
406 PRK00635 excinuclease ABC subu 99.6 1.2E-15 2.7E-20 171.3 12.7 83 181-266 808-906 (1809)
407 COG4615 PvdE ABC-type sideroph 99.6 1.6E-15 3.6E-20 145.5 11.6 155 99-258 327-529 (546)
408 KOG0060 Long-chain acyl-CoA tr 99.6 1.8E-15 3.9E-20 151.1 11.0 149 97-246 436-637 (659)
409 KOG0065 Pleiotropic drug resis 99.6 1.1E-15 2.3E-20 164.9 8.1 152 110-263 805-1018(1391)
410 cd03276 ABC_SMC6_euk Eukaryoti 99.6 2.1E-15 4.6E-20 136.1 8.8 122 124-246 23-186 (198)
411 cd01130 VirB11-like_ATPase Typ 99.6 1E-14 2.2E-19 130.3 12.0 127 112-246 15-145 (186)
412 COG1129 MglA ABC-type sugar tr 99.6 4.3E-15 9.2E-20 148.8 10.0 145 112-258 275-482 (500)
413 KOG0066 eIF2-interacting prote 99.6 4.3E-15 9.2E-20 144.1 8.9 141 98-239 590-765 (807)
414 KOG0064 Peroxisomal long-chain 99.6 4.8E-15 1E-19 146.5 9.3 141 111-253 497-685 (728)
415 COG0630 VirB11 Type IV secreto 99.6 1.5E-13 3.3E-18 132.2 19.3 216 20-246 19-261 (312)
416 cd03273 ABC_SMC2_euk Eukaryoti 99.6 5.8E-15 1.2E-19 138.0 8.4 65 180-246 164-239 (251)
417 KOG0062 ATPase component of AB 99.6 9.5E-15 2.1E-19 144.3 10.2 161 97-261 365-564 (582)
418 cd03275 ABC_SMC1_euk Eukaryoti 99.6 2.4E-15 5.2E-20 140.3 5.3 65 181-246 154-229 (247)
419 cd03243 ABC_MutS_homologs The 99.6 4.9E-15 1.1E-19 134.1 7.0 139 116-261 23-174 (202)
420 cd03227 ABC_Class2 ABC-type Cl 99.5 1E-14 2.3E-19 127.4 8.0 121 121-246 20-151 (162)
421 COG1245 Predicted ATPase, RNas 99.5 2E-14 4.3E-19 140.3 9.5 141 99-246 79-284 (591)
422 cd03285 ABC_MSH2_euk MutS2 hom 99.5 3.9E-14 8.5E-19 130.1 11.0 141 112-259 20-174 (222)
423 cd03239 ABC_SMC_head The struc 99.5 2.8E-14 6.1E-19 126.7 9.4 118 123-246 23-168 (178)
424 COG4170 SapD ABC-type antimicr 99.5 1.1E-14 2.3E-19 129.5 3.9 169 97-267 6-249 (330)
425 KOG2355 Predicted ABC-type tra 99.5 1.2E-13 2.5E-18 122.6 9.2 157 97-258 16-229 (291)
426 cd03282 ABC_MSH4_euk MutS4 hom 99.5 1.4E-13 3.1E-18 124.8 7.7 127 112-242 19-158 (204)
427 COG4962 CpaF Flp pilus assembl 99.4 1.9E-12 4.2E-17 123.4 15.2 214 21-246 52-294 (355)
428 cd03283 ABC_MutS-like MutS-lik 99.4 2.3E-13 4.9E-18 123.0 8.5 117 119-241 22-154 (199)
429 KOG0066 eIF2-interacting prote 99.4 1.3E-13 2.8E-18 133.9 7.1 156 97-258 267-490 (807)
430 cd03277 ABC_SMC5_euk Eukaryoti 99.4 1.7E-13 3.7E-18 125.1 7.2 75 180-254 124-211 (213)
431 COG1855 ATPase (PilT family) [ 99.4 3.7E-13 7.9E-18 131.1 9.7 205 26-243 148-373 (604)
432 cd03284 ABC_MutS1 MutS1 homolo 99.4 4.3E-13 9.4E-18 122.7 8.4 135 112-263 21-178 (216)
433 PRK00635 excinuclease ABC subu 99.4 3.6E-12 7.8E-17 143.8 13.0 85 180-267 1697-1797(1809)
434 COG0178 UvrA Excinuclease ATPa 99.4 5.3E-12 1.2E-16 130.7 12.7 83 182-266 822-919 (935)
435 cd03281 ABC_MSH5_euk MutS5 hom 99.3 5.3E-12 1.1E-16 115.3 10.6 110 123-241 30-160 (213)
436 smart00534 MUTSac ATPase domai 99.3 2.7E-12 5.8E-17 114.6 8.4 111 124-244 1-130 (185)
437 COG3845 ABC-type uncharacteriz 99.3 5.5E-12 1.2E-16 124.7 10.3 163 97-263 260-489 (501)
438 COG2401 ABC-type ATPase fused 99.3 1.8E-12 3.9E-17 125.4 5.7 135 111-246 398-580 (593)
439 PRK13695 putative NTPase; Prov 99.2 8.6E-11 1.9E-15 103.7 11.5 129 124-258 2-156 (174)
440 cd03241 ABC_RecN RecN ATPase i 99.2 2.5E-11 5.4E-16 115.1 8.5 66 183-252 171-247 (276)
441 cd03287 ABC_MSH3_euk MutS3 hom 99.2 7.1E-11 1.5E-15 108.4 10.5 126 112-240 21-159 (222)
442 TIGR01069 mutS2 MutS2 family p 99.1 3.3E-11 7.1E-16 128.6 5.9 118 115-238 314-448 (771)
443 KOG0065 Pleiotropic drug resis 99.1 5.7E-11 1.2E-15 128.9 5.8 155 110-266 129-351 (1391)
444 cd03286 ABC_MSH6_euk MutS6 hom 99.1 3.9E-10 8.4E-15 103.3 7.5 126 112-242 20-160 (218)
445 cd01120 RecA-like_NTPases RecA 99.0 8.4E-10 1.8E-14 94.6 9.2 115 124-239 1-141 (165)
446 TIGR00630 uvra excinuclease AB 99.0 1.5E-10 3.2E-15 125.3 5.4 85 179-266 484-583 (924)
447 cd03242 ABC_RecF RecF is a rec 99.0 6.5E-10 1.4E-14 105.1 9.1 60 182-242 183-255 (270)
448 PRK00349 uvrA excinuclease ABC 99.0 1.7E-10 3.6E-15 125.1 5.3 85 179-266 486-585 (943)
449 cd01124 KaiC KaiC is a circadi 99.0 4.2E-10 9.1E-15 99.7 7.0 113 124-237 1-142 (187)
450 PRK00409 recombination and DNA 99.0 3.2E-10 7E-15 121.4 5.8 120 122-246 327-461 (782)
451 PRK08533 flagellar accessory p 99.0 7.4E-09 1.6E-13 95.7 13.2 115 118-234 20-162 (230)
452 smart00382 AAA ATPases associa 98.9 6.5E-09 1.4E-13 85.7 10.2 109 122-234 2-125 (148)
453 KOG0063 RNAse L inhibitor, ABC 98.9 1.1E-09 2.4E-14 106.6 5.7 124 123-246 368-528 (592)
454 PRK06067 flagellar accessory p 98.9 2.6E-08 5.7E-13 92.0 13.8 134 118-255 21-183 (234)
455 KOG0063 RNAse L inhibitor, ABC 98.7 6E-08 1.3E-12 94.8 7.7 128 119-246 97-284 (592)
456 PRK09183 transposase/IS protei 98.6 1E-07 2.2E-12 89.7 8.8 135 113-264 94-243 (259)
457 COG1618 Predicted nucleotide k 98.6 2.8E-07 6.2E-12 79.3 9.6 127 124-261 7-161 (179)
458 PRK07721 fliI flagellum-specif 98.6 1.5E-07 3.3E-12 94.4 9.4 147 111-264 148-341 (438)
459 PRK05399 DNA mismatch repair p 98.6 1.7E-07 3.6E-12 101.7 10.0 120 112-243 598-737 (854)
460 PF02463 SMC_N: RecF/RecN/SMC 98.6 1.9E-07 4.1E-12 85.2 8.7 59 181-239 135-203 (220)
461 cd00009 AAA The AAA+ (ATPases 98.5 3.7E-07 7.9E-12 76.0 8.8 112 112-236 7-131 (151)
462 PRK06793 fliI flagellum-specif 98.5 2E-07 4.3E-12 93.2 7.5 137 112-258 147-303 (432)
463 PF13304 AAA_21: AAA domain; P 98.5 8.4E-08 1.8E-12 87.1 4.1 55 184-238 238-302 (303)
464 COG3910 Predicted ATPase [Gene 98.5 9.4E-07 2E-11 78.0 10.1 124 112-236 26-189 (233)
465 cd01121 Sms Sms (bacterial rad 98.5 2.2E-07 4.7E-12 91.7 7.0 190 119-315 79-302 (372)
466 COG1066 Sms Predicted ATP-depe 98.5 5.8E-07 1.3E-11 87.8 8.8 185 119-315 90-312 (456)
467 PRK08181 transposase; Validate 98.5 4E-07 8.8E-12 85.9 7.5 131 117-265 101-246 (269)
468 cd01128 rho_factor Transcripti 98.4 3.2E-07 6.9E-12 85.7 6.2 132 119-255 13-211 (249)
469 PRK06995 flhF flagellar biosyn 98.4 1.3E-06 2.8E-11 88.6 10.2 45 116-160 250-295 (484)
470 PTZ00132 GTP-binding nuclear p 98.4 7.2E-07 1.6E-11 81.1 6.8 31 187-217 157-192 (215)
471 TIGR00416 sms DNA repair prote 98.4 5.6E-07 1.2E-11 91.1 6.6 114 119-237 91-224 (454)
472 TIGR00618 sbcc exonuclease Sbc 98.4 2.4E-07 5.3E-12 102.9 4.3 72 178-251 946-1034(1042)
473 PF00488 MutS_V: MutS domain V 98.4 3E-06 6.4E-11 78.6 10.7 109 123-240 44-171 (235)
474 PRK04296 thymidine kinase; Pro 98.4 3E-06 6.5E-11 76.0 10.3 113 122-238 2-119 (190)
475 PRK06526 transposase; Provisio 98.4 8E-07 1.7E-11 83.3 6.6 128 119-264 95-237 (254)
476 PF03266 NTPase_1: NTPase; In 98.3 1.7E-06 3.6E-11 76.2 7.9 43 193-236 89-136 (168)
477 cd00820 PEPCK_HprK Phosphoenol 98.3 3.1E-07 6.8E-12 74.4 2.6 32 112-143 5-36 (107)
478 PRK14722 flhF flagellar biosyn 98.3 1.2E-06 2.6E-11 86.1 6.0 48 112-159 127-175 (374)
479 TIGR03238 dnd_assoc_3 dnd syst 98.2 7.4E-07 1.6E-11 89.4 4.1 45 110-156 20-64 (504)
480 PRK11823 DNA repair protein Ra 98.2 5.9E-06 1.3E-10 83.6 10.2 113 119-236 77-209 (446)
481 cd01125 repA Hexameric Replica 98.2 1.6E-06 3.4E-11 80.5 5.0 37 122-158 1-48 (239)
482 PRK13830 conjugal transfer pro 98.2 5.6E-06 1.2E-10 89.8 9.9 42 198-239 650-699 (818)
483 TIGR00634 recN DNA repair prot 98.2 7.7E-07 1.7E-11 92.7 3.0 69 181-253 439-518 (563)
484 PRK14088 dnaA chromosomal repl 98.2 3.5E-06 7.6E-11 85.2 7.6 124 124-263 132-265 (440)
485 PF01695 IstB_IS21: IstB-like 98.2 2.5E-06 5.5E-11 75.7 5.6 100 119-235 44-151 (178)
486 TIGR01026 fliI_yscN ATPase Fli 98.2 6.4E-06 1.4E-10 82.9 8.9 146 111-264 153-346 (440)
487 PRK06835 DNA replication prote 98.2 2.5E-05 5.3E-10 76.0 12.5 125 121-260 182-316 (329)
488 PRK12377 putative replication 98.1 9E-06 2E-10 75.9 8.6 122 122-259 101-233 (248)
489 PTZ00454 26S protease regulato 98.1 8.2E-06 1.8E-10 81.3 8.5 118 120-263 177-318 (398)
490 PRK10416 signal recognition pa 98.1 5.1E-06 1.1E-10 80.4 6.7 88 120-211 112-207 (318)
491 PRK06893 DNA replication initi 98.1 2.2E-05 4.8E-10 72.4 10.4 114 123-263 40-163 (229)
492 PRK07952 DNA replication prote 98.1 1.4E-05 3E-10 74.5 8.6 122 123-259 100-232 (244)
493 TIGR01070 mutS1 DNA mismatch r 98.1 1.4E-05 3E-10 86.7 9.7 109 122-239 592-719 (840)
494 cd02023 UMPK Uridine monophosp 98.1 6.4E-06 1.4E-10 74.0 6.2 23 124-146 1-23 (198)
495 PF13555 AAA_29: P-loop contai 98.1 3.7E-06 7.9E-11 61.2 3.6 32 118-149 18-50 (62)
496 PRK09862 putative ATP-dependen 98.1 3.5E-05 7.6E-10 78.8 11.7 53 98-152 188-240 (506)
497 PRK08116 hypothetical protein; 98.1 5.2E-05 1.1E-09 71.7 12.1 128 122-263 114-251 (268)
498 PRK10869 recombination and rep 98.1 2.5E-06 5.4E-11 88.6 3.4 68 181-252 429-507 (553)
499 PRK00300 gmk guanylate kinase; 98.1 1E-05 2.2E-10 73.0 6.9 29 119-147 2-30 (205)
500 PRK10246 exonuclease subunit S 98.1 4.2E-06 9.1E-11 93.0 5.3 63 178-240 945-1022(1047)
No 1
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.3e-37 Score=277.67 Aligned_cols=241 Identities=39% Similarity=0.622 Sum_probs=212.4
Q ss_pred chHHHHHHhcCHHHHHHHhcccCCCCeEEEEEecCCceEEEEeCccCceecCCCCCCHHHHHHHHHHHhcc---------
Q 017797 2 NAFGAFWQILPSDLRDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEF--------- 72 (365)
Q Consensus 2 ~~~~~~~~~lp~~i~~~l~~~~~~~~~~ei~l~~g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~--------- 72 (365)
+++++++++||..|++.|+++|+..+++||++++|+||.+++.|.. .+++..++|++|+..++++++.|
T Consensus 1 ~dleei~~iLPe~i~~~l~~~p~~~~l~Evri~v~Rp~e~~~~~~~--vyl~~~~vT~ed~~~~~~rls~ysiys~e~el 78 (308)
T COG3854 1 DDLEEIFSILPEKIRQILKEIPDRNNLEEVRIRVNRPLEAIFPGQP--VYLSYIGVTKEDLQKTLNRLSGYSIYSVEEEL 78 (308)
T ss_pred CCHHHHHHhChHHHHHHHHhCCccccceeeEeecCCCceEecCCCc--eecccccccHHHHHHHHHHhcccccccchhhh
Confidence 4789999999999999999999988999999999999999998864 47777889999999999998644
Q ss_pred -------CCCeeeEecCce----EEEEEEEecCCceeeEEEEECCcccCcch-hhhhcccCCcE-EEEEcCCCCcHHHHH
Q 017797 73 -------GGDNRAGIEGTL----HRISAIRSRKGAIVGLTCRVGRAVSGHID-MVYDLLHYGKS-ILFVGRPGVGKTTVM 139 (365)
Q Consensus 73 -------~~~~~~~~~g~~----~rv~~~~~~~~~i~~l~~r~~~~~~~~~~-~l~~~l~~g~~-v~iiGpnGsGKTTll 139 (365)
.++||++++|.+ ..|..+++ |.++|+|+++...|+.+ -+....+.|.. ++++||||+||||+|
T Consensus 79 r~Gyit~~ggHRVg~~g~~~~E~~~vkt~rd----I~slniRv~r~v~Gt~~~li~~ly~~g~lntLiigpP~~GKTTlL 154 (308)
T COG3854 79 RAGYITIRGGHRVGLAGNVTLEEGKVKTIRD----ISSLNIRVARQVFGTANPLIKDLYQNGWLNTLIIGPPQVGKTTLL 154 (308)
T ss_pred hcceeEeeccceeeeccccccccccccceee----eceeeeeehhhhhccchHHHHHHHhcCceeeEEecCCCCChHHHH
Confidence 466777777653 35566666 88999999999998887 45556677876 999999999999999
Q ss_pred HHHHhccccC----CCCeEEEEcCCCcccCC-CCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHH
Q 017797 140 REIARVLSDE----FQKRVVIVDTSNEIGGD-GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (365)
Q Consensus 140 r~l~gll~~~----~~~~i~~i~~~~ei~~~-~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d 214 (365)
|.|+++++.. ..++++++|+++|++.+ .++|+...+ ++++++.++.|...++++...|.|+|||+||++..+|
T Consensus 155 RdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g--~R~dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d 232 (308)
T COG3854 155 RDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRG--RRMDVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEED 232 (308)
T ss_pred HHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhh--hhhhhcccchHHHHHHHHHHhcCCcEEEEeccccHHH
Confidence 9999999876 57899999999999875 566765554 6899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHH
Q 017797 215 AHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI 250 (365)
Q Consensus 215 ~~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll 250 (365)
..+++++.+.|+.++.|.|.....+...++.+++++
T Consensus 233 ~~A~~ta~~~GVkli~TaHG~~iedl~krp~lkdlv 268 (308)
T COG3854 233 ALAILTALHAGVKLITTAHGNGIEDLIKRPTLKDLV 268 (308)
T ss_pred HHHHHHHHhcCcEEEEeeccccHHHhhcChhHHHHH
Confidence 999999999999999999999999999999998877
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-36 Score=265.56 Aligned_cols=170 Identities=16% Similarity=0.225 Sum_probs=139.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC----c-------cc-
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----E-------IG- 164 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~----e-------i~- 164 (365)
+++++|+|+...+ ++++++.+.+|+++.|+||+|||||||||||+++..++. +.|.+-.+.. + ++
T Consensus 5 i~~l~K~fg~~~V--Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~-G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 5 IKNLSKSFGDKEV--LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS-GSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred EEeeeEEeCCeEE--ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCC-ceEEECCEeccchhhHHHHHHhcCe
Confidence 7799999999988 999999999999999999999999999999999999984 3444322111 0 00
Q ss_pred -C--CCCCchhhhhh------------------------h----------hhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 165 -G--DGDIPHSAIGT------------------------A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 165 -~--~~~~~~~~~~~------------------------~----------~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
+ ...+||..+.. . .....+|||||||++|||||+++|+++++|
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD 161 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD 161 (240)
T ss_pred ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec
Confidence 0 12233332110 0 234457999999999999999999999999
Q ss_pred CCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchHH
Q 017797 208 EIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKS 271 (365)
Q Consensus 208 Ep~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~~ 271 (365)
||||.+|++ .++.++++|.|.+++||.+.++..++|+++ +|++|+++..|+|++++.++..+
T Consensus 162 EPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vadrvi--Fmd~G~iie~g~p~~~f~~p~~~ 230 (240)
T COG1126 162 EPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVI--FMDQGKIIEEGPPEEFFDNPKSE 230 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEE--EeeCCEEEEecCHHHHhcCCCCH
Confidence 999999975 466788999999999999999999999999 99999999999999999876543
No 3
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.1e-36 Score=271.20 Aligned_cols=167 Identities=22% Similarity=0.256 Sum_probs=138.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------CeEEEEcCCCc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--------------KRVVIVDTSNE 162 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~--------------~~i~~i~~~~e 162 (365)
+.+++|+|+...+ ++++++.+++|++++++|||||||||++|+|+|++.|+.| .+|+|+++.+.
T Consensus 5 ie~vtK~Fg~k~a--v~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERG 82 (300)
T COG4152 5 IEGVTKSFGDKKA--VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERG 82 (300)
T ss_pred EecchhccCceee--ecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhc
Confidence 6799999999988 9999999999999999999999999999999999999742 13444444333
Q ss_pred ccC-------------CCCCchhhhh-----h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHH
Q 017797 163 IGG-------------DGDIPHSAIG-----T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (365)
Q Consensus 163 i~~-------------~~~~~~~~~~-----~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d 214 (365)
++. ..+++...+. + .++++.+|.|++|++.+.+++.|+|+++|||||++++|
T Consensus 83 Ly~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLD 162 (300)
T COG4152 83 LYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLD 162 (300)
T ss_pred cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 321 1223322211 0 14566789999999999999999999999999999999
Q ss_pred H-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 215 A-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 215 ~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+ +++.++++.|.|||+++|.|+-++.+||+++ ++++|+.|.+|+.+.+.+.
T Consensus 163 PVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~ll--mL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 163 PVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLL--MLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred hhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhh--eecCCceEEeccHHHHHHh
Confidence 5 4667778999999999999999999999999 9999999999999998763
No 4
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.4e-33 Score=260.78 Aligned_cols=223 Identities=21% Similarity=0.266 Sum_probs=188.2
Q ss_pred HHHHHHHhcccCCCCeEEEEEecCCceEEEEeCccCceecCCCCCCHHHHHHHHHHH----------hccCCCeeeEecC
Q 017797 13 SDLRDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAV----------GEFGGDNRAGIEG 82 (365)
Q Consensus 13 ~~i~~~l~~~~~~~~~~ei~l~~g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~----------~~~~~~~~~~~~g 82 (365)
.+|.+.+..... .++|||||.+|.||++|++|++. ++..+++|.+++..++..+ .+.+.|++++++|
T Consensus 3 m~i~~il~~a~~-~~aSDiHL~~G~pp~~Ri~G~l~--~~~~p~lt~~~~~~l~~~il~~~q~~~~~~~~E~Dfs~~~~~ 79 (353)
T COG2805 3 MDIEEILAEAVK-NGASDLHLSAGLPPRIRIDGELR--PINYPPLTAEDVQSLLREILNDDQRKILEENGELDFSYTLPG 79 (353)
T ss_pred ccHHHHHHHHHh-cCCCchhhccCCCceEEecCcee--ecCCCCCCHHHHHHHHHHHhCHHHHHHHHHhcceeEEEecCC
Confidence 345566665543 78999999999999999999875 6665569999999877655 2348999999998
Q ss_pred c-eEEEEEEEecCCceeeEEEEECCccc------Ccchhhhhccc-CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeE
Q 017797 83 T-LHRISAIRSRKGAIVGLTCRVGRAVS------GHIDMVYDLLH-YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV 154 (365)
Q Consensus 83 ~-~~rv~~~~~~~~~i~~l~~r~~~~~~------~~~~~l~~~l~-~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i 154 (365)
. |||||+|++++|. ++.+|.....+ +.++.+...++ +.+.++++||+||||||+|.+|.+++|.+...+|
T Consensus 80 ~~RfRvN~f~qr~~~--a~vlR~Ip~~i~~~e~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HI 157 (353)
T COG2805 80 VARFRVNAFKQRGGY--ALVLRLIPSKIPTLEELGLPPIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHI 157 (353)
T ss_pred cceEEeehhhhcCCc--EEEEeccCccCCCHHHcCCCHHHHHHHhCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcce
Confidence 8 8999999999999 99999987666 56666666554 5679999999999999999999999999989999
Q ss_pred EEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcC
Q 017797 155 VIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHG 234 (365)
Q Consensus 155 ~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~ 234 (365)
.+++++.|+.+. +.-....+.++..+...+..++.+||+.|||||+++|+++.+++.+...++++||.|+.|.|.
T Consensus 158 lTIEDPIE~vh~-----skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGEmRD~ETi~~ALtAAETGHLV~~TLHT 232 (353)
T COG2805 158 LTIEDPIEYVHE-----SKKSLINQREVGRDTLSFANALRAALREDPDVILVGEMRDLETIRLALTAAETGHLVFGTLHT 232 (353)
T ss_pred EEecCchHhhhc-----chHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEeccccHHHHHHHHHHHhcCCEEEEeccc
Confidence 999999998542 222223456777888999999999999999999999999999999999999999999999999
Q ss_pred cchhHHhhhHHH
Q 017797 235 EWLENIIKNPIL 246 (365)
Q Consensus 235 ~~~~~~~~d~i~ 246 (365)
.+.++. -||++
T Consensus 233 ~sA~~t-i~Rii 243 (353)
T COG2805 233 NSAAKT-IDRII 243 (353)
T ss_pred ccHHHH-HHHHH
Confidence 997765 45665
No 5
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.5e-33 Score=260.57 Aligned_cols=166 Identities=19% Similarity=0.246 Sum_probs=139.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||||+|+|+++|..| +++.|++
T Consensus 5 ~~~ls~~y~~~~i--l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vp 82 (258)
T COG1120 5 VENLSFGYGGKPI--LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVP 82 (258)
T ss_pred EEEEEEEECCeeE--EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEec
Confidence 6799999998888 9999999999999999999999999999999999998732 3677777
Q ss_pred CCCcccC---------CCCCchhhhh-----------------------hhhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGG---------DGDIPHSAIG-----------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~---------~~~~~~~~~~-----------------------~~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+.....+ .+..|+.... ..+.+..+|||++||+.+|+||+++|++|++
T Consensus 83 Q~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLL 162 (258)
T COG1120 83 QSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLL 162 (258)
T ss_pred cCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEe
Confidence 7644322 1222321110 0145677899999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHH-HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||||+.+|+ +.++++. ++|.|||+++|+.+.+..+||+++ +|++|++++.|+|+++++
T Consensus 163 DEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i--~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 163 DEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLI--LLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEECCeEEeecCcchhcC
Confidence 999999994 5677776 569999999999999999999999 999999999999999876
No 6
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-33 Score=247.22 Aligned_cols=168 Identities=21% Similarity=0.235 Sum_probs=133.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eEEEEcC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDT 159 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-----------------~i~~i~~ 159 (365)
+++++|+|+... .++++++|.++.|++++|+|||||||||+||+|+.++.|+.|. +|+++..
T Consensus 4 v~~l~K~y~~~v-~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~ 82 (245)
T COG4555 4 VTDLTKSYGSKV-QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFG 82 (245)
T ss_pred eeehhhhccCHH-hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecC
Confidence 678999999854 4599999999999999999999999999999999999998542 2222221
Q ss_pred CCcccCCCCCchh-------------hh-----------h----hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc
Q 017797 160 SNEIGGDGDIPHS-------------AI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 160 ~~ei~~~~~~~~~-------------~~-----------~----~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~ 211 (365)
...++......++ .+ + .-++...+|.||||++++|+|+.|+|+++++|||++
T Consensus 83 e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~s 162 (245)
T COG4555 83 ERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTS 162 (245)
T ss_pred CcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCC
Confidence 1111110000000 00 0 015566789999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 212 EAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 212 ~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
++|+ +.+.++.+.|.+||++||.+.+++.+||+++ ++++|++|+.|+++++...
T Consensus 163 GLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvi--vlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 163 GLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVI--VLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred CccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEE--EEecCcEEEcCCHHHHHHH
Confidence 9996 4566667889999999999999999999999 9999999999999988753
No 7
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.97 E-value=4.6e-32 Score=260.45 Aligned_cols=166 Identities=18% Similarity=0.243 Sum_probs=134.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------CeEEEEcC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----------------KRVVIVDT 159 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----------------~~i~~i~~ 159 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|++.|+.| .+++|+++
T Consensus 10 i~~l~k~~~~~~~--l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q 87 (306)
T PRK13537 10 FRNVEKRYGDKLV--VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQ 87 (306)
T ss_pred EEeEEEEECCeEE--EecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEec
Confidence 7799999987665 9999999999999999999999999999999999988743 23566655
Q ss_pred CCcccCC-------------CCCchhh----hh-----------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc
Q 017797 160 SNEIGGD-------------GDIPHSA----IG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 160 ~~ei~~~-------------~~~~~~~----~~-----------~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~ 211 (365)
...+... .+.+... +. ..+++..+|+||+||+++|+|++++|++|++||||+
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~ 167 (306)
T PRK13537 88 FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167 (306)
T ss_pred cCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 4433211 0111000 00 013345679999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 212 EAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 212 ~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++|+ +.+.+++++|.|||+|||++++++.+||+++ ++++|++++.|+++++..
T Consensus 168 gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~--il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLC--VIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHh
Confidence 9995 4566666679999999999999999999999 999999999999998764
No 8
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=2.5e-32 Score=247.39 Aligned_cols=174 Identities=18% Similarity=0.243 Sum_probs=139.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC----------cccC-
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----------EIGG- 165 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~----------ei~~- 165 (365)
+++++|+|+...+ ++++++.+++|+++.++||+||||||+|++|++++.|+.| .|.+-.++. .+++
T Consensus 4 ~~nvsk~y~~~~a--v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G-~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 4 FENVSKRYGNKKA--VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSG-EILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred eeeeehhcCCcee--eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCc-eEEECCeecccCCHHHHHHhhhhh
Confidence 6799999998877 9999999999999999999999999999999999999853 444332211 1111
Q ss_pred ---CCCCchhhhhh-----------------------------------hhhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 166 ---DGDIPHSAIGT-----------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 166 ---~~~~~~~~~~~-----------------------------------~~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
.+.+||..+.. -+....+||||+||++++|||+.+|++|++|
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMD 160 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD 160 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeec
Confidence 12233332110 0345567999999999999999999999999
Q ss_pred CCCcHHHH-------HHHHHHH-HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchHHHHHh
Q 017797 208 EIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILER 275 (365)
Q Consensus 208 Ep~~~~d~-------~~i~~~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~~~~~~ 275 (365)
||++.+|+ +.+..+. +-|+|++++|||++++-.++|++. +|++|+++.+++|+++.++|..+....
T Consensus 161 EPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~--vm~~G~i~Q~~~P~~il~~Pan~FV~~ 234 (309)
T COG1125 161 EPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIA--VMDAGEIVQYDTPDEILANPANDFVED 234 (309)
T ss_pred CCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEE--EecCCeEEEeCCHHHHHhCccHHHHHH
Confidence 99999995 3445554 459999999999999999999999 999999999999999999876655543
No 9
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.6e-31 Score=246.11 Aligned_cols=166 Identities=15% Similarity=0.250 Sum_probs=137.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------CeEEEEcCCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------KRVVIVDTSN 161 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~---------------~~i~~i~~~~ 161 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|++.|..| .+|+|++|..
T Consensus 7 v~nl~v~y~~~~v--l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~ 84 (254)
T COG1121 7 VENLTVSYGNRPV--LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKS 84 (254)
T ss_pred EeeeEEEECCEee--eeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCccc
Confidence 7799999996545 9999999999999999999999999999999999988732 3588888865
Q ss_pred cccCC-----------CCCchh------------hhh-----------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 162 EIGGD-----------GDIPHS------------AIG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 162 ei~~~-----------~~~~~~------------~~~-----------~~~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
.+... +.+++. .+. .-++++.+||||+||+.|||||+++|++|+||
T Consensus 85 ~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLD 164 (254)
T COG1121 85 SVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLD 164 (254)
T ss_pred ccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEec
Confidence 44221 111111 000 01567788999999999999999999999999
Q ss_pred CCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 208 EIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 208 Ep~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
||+.+.|. +++.+++++|+||++++||.+.+..++|+++ ++.+ ++++.|+++++++.
T Consensus 165 EP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi--~Ln~-~~~~~G~~~~~~~~ 228 (254)
T COG1121 165 EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVI--CLNR-HLIASGPPEEVLTE 228 (254)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEE--EEcC-eeEeccChhhccCH
Confidence 99999884 5677888889999999999999999999999 7774 88999999998763
No 10
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=1.4e-31 Score=241.07 Aligned_cols=176 Identities=18% Similarity=0.209 Sum_probs=139.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------------eEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------------RVV 155 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~---------------------~i~ 155 (365)
+++++++|+...+ ++++++.+++|++++|+||+|||||||||.|.|++.|+.|. +++
T Consensus 11 vr~v~~~fG~~~I--ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~G 88 (263)
T COG1127 11 VRGVTKSFGDRVI--LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMG 88 (263)
T ss_pred EeeeeeecCCEEE--ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhhee
Confidence 6799999999999 99999999999999999999999999999999999998432 223
Q ss_pred EEcCCCcccCC--------------CCCchhhhhh----------------hhhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 156 IVDTSNEIGGD--------------GDIPHSAIGT----------------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 156 ~i~~~~ei~~~--------------~~~~~~~~~~----------------~~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
++.|..-+... ..+|...+.. ......+||||++|+++|||++.+|++|+
T Consensus 89 vlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~ 168 (263)
T COG1127 89 VLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF 168 (263)
T ss_pred EEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEE
Confidence 33322221111 1112211110 02234579999999999999999999999
Q ss_pred EcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchHHHHHhh
Q 017797 206 VDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 276 (365)
Q Consensus 206 lDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~~~~~~~ 276 (365)
+||||+++|+ ++++.+.++ |.|++++||+++.+..+||+++ ++.+|++++.|+++++.....+.+.+.+
T Consensus 169 ~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~--~L~~gkv~~~Gt~~el~~sd~P~v~qf~ 245 (263)
T COG1127 169 LDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVA--VLADGKVIAEGTPEELLASDDPWVRQFF 245 (263)
T ss_pred ecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEE--EEeCCEEEEeCCHHHHHhCCCHHHHHHh
Confidence 9999999995 567777766 9999999999999999999999 9999999999999999875555555443
No 11
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.97 E-value=1.8e-31 Score=259.46 Aligned_cols=166 Identities=17% Similarity=0.230 Sum_probs=133.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------CeEEEEcC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----------------KRVVIVDT 159 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----------------~~i~~i~~ 159 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|++.|+.| ..++++++
T Consensus 44 i~nl~k~y~~~~~--l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q 121 (340)
T PRK13536 44 LAGVSKSYGDKAV--VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQ 121 (340)
T ss_pred EEEEEEEECCEEE--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeC
Confidence 7799999988766 9999999999999999999999999999999999988743 23555554
Q ss_pred CCcccCCC-------------CCchhh----h-------h----hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc
Q 017797 160 SNEIGGDG-------------DIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 160 ~~ei~~~~-------------~~~~~~----~-------~----~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~ 211 (365)
...+.... ..+... . + ..+++..+|+||+||+++|+||+++|++||+||||+
T Consensus 122 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~ 201 (340)
T PRK13536 122 FDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT 201 (340)
T ss_pred CccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 43322110 011000 0 0 012344579999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 212 EAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 212 ~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++|+ +.+.++.+.|.|||++||++++++.+||+++ ++++|++++.|+++++..
T Consensus 202 gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~--il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 202 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLC--VLEAGRKIAEGRPHALID 261 (340)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHh
Confidence 9995 4566666679999999999999999999999 999999999999998865
No 12
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.1e-31 Score=244.67 Aligned_cols=179 Identities=15% Similarity=0.191 Sum_probs=139.6
Q ss_pred eeeEEEEECCc---ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------------
Q 017797 97 IVGLTCRVGRA---VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------- 152 (365)
Q Consensus 97 i~~l~~r~~~~---~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~--------------------- 152 (365)
+++++|.|... ...+++++++.+++|++++|+|++|||||||+|++.++..|+.|.
T Consensus 4 l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~ 83 (339)
T COG1135 4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQ 83 (339)
T ss_pred EEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHh
Confidence 56889999763 234699999999999999999999999999999999999998532
Q ss_pred eEEEEcCCCcccCCC-------------CCchhhhhh---------------hhhccCCCcchhHHHHHHHHHhhCCCEE
Q 017797 153 RVVIVDTSNEIGGDG-------------DIPHSAIGT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (365)
Q Consensus 153 ~i~~i~~~~ei~~~~-------------~~~~~~~~~---------------~~~~~~~S~g~~~r~~la~al~~~P~vl 204 (365)
+|+++++...+.... +++...+.. .+....+|+|||||++|||||+.+|++|
T Consensus 84 ~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iL 163 (339)
T COG1135 84 KIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKIL 163 (339)
T ss_pred hccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEE
Confidence 233333322221111 122111100 0234457999999999999999999999
Q ss_pred EEcCCCcHHHHH-------HHHHHH-HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchHHHHHhh
Q 017797 205 IVDEIGTEAEAH-------ACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 276 (365)
Q Consensus 205 ilDEp~~~~d~~-------~i~~~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~~~~~~~ 276 (365)
++||+||.+|++ .++.+. +-|.||+++||.|+.+..+||++. +|++|++|..|+..++|.+|+..+...+
T Consensus 164 L~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVa--vm~~G~lvE~G~v~~vF~~Pk~~~t~~f 241 (339)
T COG1135 164 LCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVA--VLDQGRLVEEGTVSEVFANPKHAITQEF 241 (339)
T ss_pred EecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhhe--EeeCCEEEEeccHHHhhcCcchHHHHHH
Confidence 999999999973 344443 459999999999999999999999 9999999999999999999887777655
Q ss_pred C
Q 017797 277 A 277 (365)
Q Consensus 277 ~ 277 (365)
-
T Consensus 242 i 242 (339)
T COG1135 242 I 242 (339)
T ss_pred H
Confidence 4
No 13
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=7.1e-31 Score=252.78 Aligned_cols=172 Identities=19% Similarity=0.257 Sum_probs=138.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++|+|+...+ ++++++.+++|+++.|+||+||||||+||+|+|+..|+.| +.|.++++.
T Consensus 8 i~~v~k~yg~~~a--v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~ 85 (352)
T COG3842 8 IRNVSKSFGDFTA--VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQS 85 (352)
T ss_pred EEeeeeecCCeeE--EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecC
Confidence 6799999997777 9999999999999999999999999999999999999843 233444443
Q ss_pred CcccCCCCCchhhhh----------------------------------hhhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 161 NEIGGDGDIPHSAIG----------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 161 ~ei~~~~~~~~~~~~----------------------------------~~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
--+ +||..+. ..++...+|+||+||+++||||..+|++|++
T Consensus 86 YAL-----FPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLL 160 (352)
T COG3842 86 YAL-----FPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLL 160 (352)
T ss_pred ccc-----CCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhh
Confidence 222 1222110 0144556799999999999999999999999
Q ss_pred cCCCcHHHHH-------HHHHH-HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchHHHH-HhhC
Q 017797 207 DEIGTEAEAH-------ACRSI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSIL-ERKA 277 (365)
Q Consensus 207 DEp~~~~d~~-------~i~~~-~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~~~~-~~~~ 277 (365)
|||.+.+|.+ .++.+ .+.|+|.|++||+.+++..++|++. +|++|++...|+|++++..|..... ...+
T Consensus 161 DEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~--Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG 238 (352)
T COG3842 161 DEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIA--VMNDGRIEQVGTPEEIYERPATRFVADFIG 238 (352)
T ss_pred cCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceE--EccCCceeecCCHHHHhhCcchHHHHHHhC
Confidence 9999999953 23333 4569999999999999999999999 9999999999999999988754433 4444
No 14
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.97 E-value=5.6e-31 Score=252.66 Aligned_cols=166 Identities=17% Similarity=0.243 Sum_probs=131.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------CeEEEEcC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----------------KRVVIVDT 159 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----------------~~i~~i~~ 159 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|++.|+.| .++.++++
T Consensus 7 ~~~l~~~~~~~~~--l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q 84 (303)
T TIGR01288 7 LVGVSKSYGDKVV--VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQ 84 (303)
T ss_pred EEeEEEEeCCeEE--EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEec
Confidence 6799999987655 9999999999999999999999999999999999987632 23455544
Q ss_pred CCcccCCC-------------CCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc
Q 017797 160 SNEIGGDG-------------DIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 160 ~~ei~~~~-------------~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~ 211 (365)
...+.... ...... +. . .+....+|+||+||+++|+|++++|++||+||||+
T Consensus 85 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (303)
T TIGR01288 85 FDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTT 164 (303)
T ss_pred cccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 43221100 011000 00 0 12344579999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 212 EAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 212 ~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++|+ +.+.+++++|.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 165 gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 165 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLC--VLESGRKIAEGRPHALID 224 (303)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHh
Confidence 9995 3455566679999999999999999999999 999999999999988764
No 15
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.2e-30 Score=248.95 Aligned_cols=166 Identities=19% Similarity=0.278 Sum_probs=134.5
Q ss_pred eeeEEEEEC-CcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------CeEEEEc
Q 017797 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----------------~~i~~i~ 158 (365)
+.+++++|+ ...+ ++++++.+++|++++|+||||||||||||+|+|++.|+.| ++++|++
T Consensus 7 ~~~l~k~~~~~~~~--l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~ 84 (293)
T COG1131 7 VRNLTKKYGGDKTA--LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVP 84 (293)
T ss_pred ecceEEEeCCCCEE--EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEc
Confidence 468999999 5777 9999999999999999999999999999999999998742 2355555
Q ss_pred CCCcccCC-------------CCCc----hhhhh---------h--hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCC
Q 017797 159 TSNEIGGD-------------GDIP----HSAIG---------T--ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (365)
Q Consensus 159 ~~~ei~~~-------------~~~~----~~~~~---------~--~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~ 210 (365)
+...+... ...+ ...+. . .+++..+|+|||||+++|.||+++|+++|+||||
T Consensus 85 ~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt 164 (293)
T COG1131 85 QEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT 164 (293)
T ss_pred cCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 54432211 1111 00110 0 1335668999999999999999999999999999
Q ss_pred cHHHH-------HHHHHHHHcC-cEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 211 TEAEA-------HACRSIAERG-VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 211 ~~~d~-------~~i~~~~~~G-~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+++|+ +.++.++++| .||++|||.+++++.+||+++ ++++|++++.|+++++..
T Consensus 165 ~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~--il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 165 SGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVI--ILNDGKIIAEGTPEELKE 226 (293)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEE--EEeCCEEEEeCCHHHHHH
Confidence 99995 5677778877 899999999999999999999 999999999999888654
No 16
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.3e-30 Score=231.70 Aligned_cols=166 Identities=17% Similarity=0.244 Sum_probs=132.1
Q ss_pred eeeEEEEE-CCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------------CeE
Q 017797 97 IVGLTCRV-GRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------------KRV 154 (365)
Q Consensus 97 i~~l~~r~-~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~---------------------~~i 154 (365)
+++++++| +...+ +++|++.+++||+++|+||+|||||||||+|+|++.++.| .++
T Consensus 6 ~~nl~k~yp~~~~a--L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~i 83 (258)
T COG3638 6 VKNLSKTYPGGHQA--LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDI 83 (258)
T ss_pred EeeeeeecCCCcee--eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhc
Confidence 77999999 66656 9999999999999999999999999999999999988743 234
Q ss_pred EEEcCCCcccCC----------------------CCCchhh----------hh----hhhhccCCCcchhHHHHHHHHHh
Q 017797 155 VIVDTSNEIGGD----------------------GDIPHSA----------IG----TARRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 155 ~~i~~~~ei~~~----------------------~~~~~~~----------~~----~~~~~~~~S~g~~~r~~la~al~ 198 (365)
+++.+...+... +.++... ++ .+.+.+.+||||+||++||+||.
T Consensus 84 GmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~ 163 (258)
T COG3638 84 GMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALV 163 (258)
T ss_pred eeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHh
Confidence 444443322110 0010000 00 02556778999999999999999
Q ss_pred hCCCEEEEcCCCcHHHH-------HHHHHHH-HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 199 HMPEVIIVDEIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 199 ~~P~vlilDEp~~~~d~-------~~i~~~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++|++|+.|||++.+|+ +.++.+. +.|.|||++.|+.+.+..+|++++ =+.+|++|++|+++++-.
T Consensus 164 Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Rii--gl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 164 QQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRII--GLKAGRIVFDGPASELTD 237 (258)
T ss_pred cCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhhe--EecCCcEEEeCChhhhhH
Confidence 99999999999999995 4555554 569999999999999999999999 899999999999988543
No 17
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.96 E-value=4.4e-30 Score=246.03 Aligned_cols=174 Identities=17% Similarity=0.221 Sum_probs=140.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++|+|+...+ ++++++.++.|+++.|+||||||||||||+|+|+..|+.| +.|.+++|+
T Consensus 6 l~~v~K~yg~~~~--l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~ 83 (338)
T COG3839 6 LKNVRKSFGSFEV--LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQN 83 (338)
T ss_pred EeeeEEEcCCcee--eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCC
Confidence 6799999998654 9999999999999999999999999999999999998843 344444444
Q ss_pred CcccCCCCCchhhhh------------------h---------------hhhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 161 NEIGGDGDIPHSAIG------------------T---------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 161 ~ei~~~~~~~~~~~~------------------~---------------~~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
.-+ +||..+. . .++...+||||+||++++||+..+|+++++|
T Consensus 84 yAL-----yPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~D 158 (338)
T COG3839 84 YAL-----YPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLD 158 (338)
T ss_pred ccc-----cCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEec
Confidence 333 2332110 0 1445678999999999999999999999999
Q ss_pred CCCcHHHHH-------HHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchH-HHHHhhCC
Q 017797 208 EIGTEAEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQK-SILERKAP 278 (365)
Q Consensus 208 Ep~~~~d~~-------~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~-~~~~~~~~ 278 (365)
||.+.+|.. .++.+.+ .|.|+|++|||..++..++|++. +|.+|++...|+|.+++..+.. .+....+.
T Consensus 159 EPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~--Vm~~G~i~Q~g~p~ely~~P~n~fVA~FiG~ 236 (338)
T COG3839 159 EPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIV--VMNDGRIQQVGTPLELYERPANLFVAGFIGS 236 (338)
T ss_pred CchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEE--EEeCCeeeecCChHHHhhCccchhhhhhcCC
Confidence 999999963 3444444 48999999999999999999999 9999999999999999987653 44444554
Q ss_pred C
Q 017797 279 P 279 (365)
Q Consensus 279 ~ 279 (365)
|
T Consensus 237 p 237 (338)
T COG3839 237 P 237 (338)
T ss_pred h
Confidence 4
No 18
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.8e-29 Score=228.32 Aligned_cols=165 Identities=17% Similarity=0.213 Sum_probs=131.7
Q ss_pred eeeEEEEECCccc--CcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc----------------
Q 017797 97 IVGLTCRVGRAVS--GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD---------------- 158 (365)
Q Consensus 97 i~~l~~r~~~~~~--~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~---------------- 158 (365)
++++++.|+.... .+++++++.+.+|++++|+|++|||||||.|+|+|+.+|+. +.|.+-.
T Consensus 6 v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~-G~I~~~G~~~~~~~~~~~~~~~V 84 (252)
T COG1124 6 VRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS-GSILLDGKPLAPKKRAKAFYRPV 84 (252)
T ss_pred EeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCC-ceEEECCcccCccccchhhccce
Confidence 6799999988771 13999999999999999999999999999999999999884 3343322
Q ss_pred ----CCCcccCCCCCchhhh---------------------h-----------hhhhccCCCcchhHHHHHHHHHhhCCC
Q 017797 159 ----TSNEIGGDGDIPHSAI---------------------G-----------TARRMQVPEPSLQHKVMIEAVENHMPE 202 (365)
Q Consensus 159 ----~~~ei~~~~~~~~~~~---------------------~-----------~~~~~~~~S~g~~~r~~la~al~~~P~ 202 (365)
+.+.-.. -|...+ . ..++...+||||+||++|||||..+|+
T Consensus 85 QmVFQDp~~SL---nP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 85 QMVFQDPYSSL---NPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred eEEecCCcccc---CcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 2111000 010000 0 014455679999999999999999999
Q ss_pred EEEEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 203 VIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 203 vlilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+||+||||+.+|. +++.++++ .|.|+|+++|+...+..+||+++ +|++|++|..+..+++...
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~--Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIA--VMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhhee--eeeCCeEEEeechhhhhcC
Confidence 9999999999994 45666654 58999999999999999999999 9999999999999998765
No 19
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.4e-29 Score=230.62 Aligned_cols=152 Identities=15% Similarity=0.182 Sum_probs=118.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------eEEEEcCCCcc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEI 163 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------------~i~~i~~~~ei 163 (365)
++++++.|+...+ ++++++.+.+|+++.|+||+|||||||||+|+|+..|+.|. .+.++.|...+
T Consensus 6 i~~v~~~f~~~~v--l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~L 83 (248)
T COG1116 6 IEGVSKSFGGVEV--LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDAL 83 (248)
T ss_pred EEeeEEEeCceEE--eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcc
Confidence 6789999999766 99999999999999999999999999999999999998432 33444443332
Q ss_pred cCC-------------CCCchhhh-----------h----hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH
Q 017797 164 GGD-------------GDIPHSAI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (365)
Q Consensus 164 ~~~-------------~~~~~~~~-----------~----~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~ 215 (365)
... .+.+.... + ..+....+||||+||++|||||+++|++|++|||++.+|.
T Consensus 84 lPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDa 163 (248)
T COG1116 84 LPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDA 163 (248)
T ss_pred cchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhH
Confidence 110 01111100 0 0134556799999999999999999999999999999995
Q ss_pred -------H-HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcC
Q 017797 216 -------H-ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 252 (365)
Q Consensus 216 -------~-~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~ 252 (365)
+ ++.-+.+.+.||+++||+.+++-.++|+++ +|..
T Consensus 164 lTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRiv--vl~~ 206 (248)
T COG1116 164 LTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVV--VLSN 206 (248)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEE--EecC
Confidence 2 233345779999999999999999999999 8876
No 20
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.2e-30 Score=237.52 Aligned_cols=173 Identities=16% Similarity=0.174 Sum_probs=135.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------CeEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------------~~i~~i 157 (365)
+++++++|++... ++++++.++.|+.++++||||||||||||+|+|+..|+.| ++|+++
T Consensus 5 i~~~~~~~~~~~a--~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfv 82 (345)
T COG1118 5 INNVKKRFGAFGA--LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFV 82 (345)
T ss_pred ehhhhhhcccccc--cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEE
Confidence 5578899988877 8899999999999999999999999999999999999843 234444
Q ss_pred cCCCcccCCCCCchhhhhh------------------------------hhhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 158 DTSNEIGGDGDIPHSAIGT------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 158 ~~~~ei~~~~~~~~~~~~~------------------------------~~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
.+...+.....+.++.... .+....+|+||+||+++|+||+..|++|+||
T Consensus 83 FQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLD 162 (345)
T COG1118 83 FQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 162 (345)
T ss_pred EechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeec
Confidence 4432221111111111000 0233456999999999999999999999999
Q ss_pred CCCcHHHHHH-------HHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchHHHH
Q 017797 208 EIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSIL 273 (365)
Q Consensus 208 Ep~~~~d~~~-------i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~~~~ 273 (365)
||++.+|... ++++.+ .|+|++++|||.+++..++|+++ +|++|+|...|+|++++..|.....
T Consensus 163 EPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvv--vl~~G~Ieqvg~p~ev~~~P~s~fV 234 (345)
T COG1118 163 EPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVV--VLNQGRIEQVGPPDEVYDHPASRFV 234 (345)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEE--EecCCeeeeeCCHHHHhcCCCccce
Confidence 9999999643 344444 49999999999999999999999 9999999999999999987654443
No 21
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.3e-29 Score=244.28 Aligned_cols=171 Identities=14% Similarity=0.187 Sum_probs=134.5
Q ss_pred eeeEEEEE-CCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcC
Q 017797 97 IVGLTCRV-GRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDT 159 (365)
Q Consensus 97 i~~l~~r~-~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~ 159 (365)
+++++++| +...+ ++++++.+++|++++|+||||||||||||+|+|+..|+.| +.+.++++
T Consensus 6 i~~l~~~~~~~~~~--l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 83 (356)
T PRK11650 6 LQAVRKSYDGKTQV--IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQ 83 (356)
T ss_pred EEeEEEEeCCCCEE--EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 67999999 66555 9999999999999999999999999999999999988743 23555555
Q ss_pred CCcccCCC-------------CCchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc
Q 017797 160 SNEIGGDG-------------DIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 160 ~~ei~~~~-------------~~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~ 211 (365)
...+.... ..+... +.. .+....+|+||+||++||+||+.+|++|++|||++
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s 163 (356)
T PRK11650 84 NYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLS 163 (356)
T ss_pred CccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 43332110 011000 000 13345679999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchHH
Q 017797 212 EAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKS 271 (365)
Q Consensus 212 ~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~~ 271 (365)
++|. +.++.+.+ .|.|+|++||+.+++..+||+++ +|++|+++..|++++++..+...
T Consensus 164 ~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~--vl~~G~i~~~g~~~~~~~~p~~~ 229 (356)
T PRK11650 164 NLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVV--VMNGGVAEQIGTPVEVYEKPAST 229 (356)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEeCCEEEEECCHHHHHhCCccH
Confidence 9995 34455554 49999999999999999999999 99999999999999998765433
No 22
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.5e-29 Score=219.39 Aligned_cols=175 Identities=14% Similarity=0.117 Sum_probs=134.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC-------------------------C
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-------------------------Q 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~-------------------------~ 151 (365)
+++|++.|+.+.+ +++++..++++++++|+||+||||||+||++.++..... +
T Consensus 10 ~~~l~~yYg~~~a--L~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lR 87 (253)
T COG1117 10 VRDLNLYYGDKHA--LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELR 87 (253)
T ss_pred ecceeEEECchhh--hccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHH
Confidence 5689999998888 999999999999999999999999999999999875331 1
Q ss_pred CeEEEEcCCCcccCC------------CCCchhhhh----h-------h--------hhccCCCcchhHHHHHHHHHhhC
Q 017797 152 KRVVIVDTSNEIGGD------------GDIPHSAIG----T-------A--------RRMQVPEPSLQHKVMIEAVENHM 200 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~~~~~~~----~-------~--------~~~~~~S~g~~~r~~la~al~~~ 200 (365)
++|+.+.+.+.-... .++....+. . + +..--+|||||||+.||||++.+
T Consensus 88 r~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~ 167 (253)
T COG1117 88 RRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVK 167 (253)
T ss_pred HHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcC
Confidence 233444332211000 011110000 0 0 11223699999999999999999
Q ss_pred CCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchHHHH
Q 017797 201 PEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSIL 273 (365)
Q Consensus 201 P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~~~~ 273 (365)
|+||++|||++.+|+ +++.+++ ..-||+++||.|.-+.+++|... ++..|++|++|+.+++|.+|..+..
T Consensus 168 PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~ta--Ff~~G~LvE~g~T~~iF~~P~~~~T 244 (253)
T COG1117 168 PEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTA--FFYLGELVEFGPTDKIFTNPKHKRT 244 (253)
T ss_pred CcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhh--hhcccEEEEEcCHHhhhcCccHHHH
Confidence 999999999999995 4555665 56899999999999999999999 8999999999999999998876655
Q ss_pred Hhh
Q 017797 274 ERK 276 (365)
Q Consensus 274 ~~~ 276 (365)
..+
T Consensus 245 edY 247 (253)
T COG1117 245 EDY 247 (253)
T ss_pred HHH
Confidence 544
No 23
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.96 E-value=5.2e-29 Score=243.96 Aligned_cols=169 Identities=16% Similarity=0.220 Sum_probs=133.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC--C----------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--Q----------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~--~----------------~~i~~i~ 158 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||||+|+|++.|+. | +.+.++.
T Consensus 8 ~~~l~~~~~~~~~--l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vf 85 (362)
T TIGR03258 8 IDHLRVAYGANTV--LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF 85 (362)
T ss_pred EEEEEEEECCeEE--EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEE
Confidence 6799999987655 999999999999999999999999999999999998875 3 2244444
Q ss_pred CCCcccCC-------------CCCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCC
Q 017797 159 TSNEIGGD-------------GDIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (365)
Q Consensus 159 ~~~ei~~~-------------~~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~ 210 (365)
+...+... ...+... +. . .+....+|+||+||+++|+||+.+|++|++|||+
T Consensus 86 Q~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~ 165 (362)
T TIGR03258 86 QNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPL 165 (362)
T ss_pred CCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 43322111 0011000 00 0 1334557999999999999999999999999999
Q ss_pred cHHHHH-------HHHHHHHc--CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 211 TEAEAH-------ACRSIAER--GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 211 ~~~d~~-------~i~~~~~~--G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
+++|.. .++++.++ |.|+|++||+.+++..+||+++ +|++|+++..|++++++..+.
T Consensus 166 s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~--vl~~G~i~~~g~~~~~~~~p~ 231 (362)
T TIGR03258 166 SALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAG--IMKDGRLAAHGEPQALYDAPA 231 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCcC
Confidence 999953 34455554 8999999999999999999999 999999999999999987654
No 24
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.5e-29 Score=243.00 Aligned_cols=170 Identities=18% Similarity=0.244 Sum_probs=134.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||||+|+|+++|+.| +++.++.+.
T Consensus 9 ~~~l~~~~~~~~~--l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~ 86 (351)
T PRK11432 9 LKNITKRFGSNTV--IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQS 86 (351)
T ss_pred EEeEEEEECCeEE--EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 6799999987665 9999999999999999999999999999999999998743 234555544
Q ss_pred CcccCCCC-------------Cchhhh----hh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 161 NEIGGDGD-------------IPHSAI----GT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 161 ~ei~~~~~-------------~~~~~~----~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
..+..... .+.... .. .+....+|+||+||++||+||+.+|++|++|||+++
T Consensus 87 ~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~ 166 (351)
T PRK11432 87 YALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN 166 (351)
T ss_pred cccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 32211100 000000 00 133456799999999999999999999999999999
Q ss_pred HHHH-------HHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchH
Q 017797 213 AEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQK 270 (365)
Q Consensus 213 ~d~~-------~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~ 270 (365)
+|.. .++.+.+ .|.|+|++||+.+++..+||+++ +|++|+++..|++++++..+..
T Consensus 167 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~--vm~~G~i~~~g~~~~~~~~p~~ 230 (351)
T PRK11432 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVI--VMNKGKIMQIGSPQELYRQPAS 230 (351)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCCCc
Confidence 9953 3444444 48999999999999999999999 9999999999999999876653
No 25
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.96 E-value=6.7e-29 Score=241.43 Aligned_cols=171 Identities=14% Similarity=0.165 Sum_probs=131.9
Q ss_pred eeeEEEEECCc--ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------------Ce
Q 017797 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------------KR 153 (365)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~---------------------~~ 153 (365)
+++++++|... ....++++++.+++|++++|+||||||||||+|+|+|+++|+.| ++
T Consensus 4 ~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~ 83 (343)
T TIGR02314 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQ 83 (343)
T ss_pred EEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcC
Confidence 67999999631 12349999999999999999999999999999999999998732 13
Q ss_pred EEEEcCCCcccCCCC-------------Cchhhh----h-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 154 VVIVDTSNEIGGDGD-------------IPHSAI----G-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 154 i~~i~~~~ei~~~~~-------------~~~~~~----~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
|.++++...+..... .+.... . . .+....+|+||+||++||+||+.+|++|+
T Consensus 84 Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLL 163 (343)
T TIGR02314 84 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL 163 (343)
T ss_pred EEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 444444332211100 110000 0 0 02334579999999999999999999999
Q ss_pred EcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 206 VDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 206 lDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
+||||+++|+ +.++++.++ |.|||++||+++.+..+||+++ +|++|++++.|++++++..+.
T Consensus 164 lDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~--vl~~G~iv~~g~~~~v~~~p~ 233 (343)
T TIGR02314 164 CDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVA--VISNGELIEQGTVSEIFSHPK 233 (343)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHcCCC
Confidence 9999999995 345556554 9999999999999999999999 999999999999999987543
No 26
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.96 E-value=6.5e-29 Score=242.75 Aligned_cols=169 Identities=18% Similarity=0.187 Sum_probs=133.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+...+ ++++++.+++|++++|+|||||||||||++|+|+.+|+.| +.++++++.
T Consensus 7 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~ 84 (353)
T TIGR03265 7 IDNIRKRFGAFTA--LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQS 84 (353)
T ss_pred EEEEEEEeCCeEE--EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 6799999987665 9999999999999999999999999999999999988743 234555544
Q ss_pred CcccCCCCC-------------chhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 161 NEIGGDGDI-------------PHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 161 ~ei~~~~~~-------------~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
..+.....+ +... +. . .+....+|+||+||+++|+||+.+|++|++|||+++
T Consensus 85 ~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~ 164 (353)
T TIGR03265 85 YALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSA 164 (353)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 332211000 0000 00 0 133445799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 213 AEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 213 ~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
+|. +.++++.+ .|.|+|++||+.+++..+||+++ +|++|++++.|++++++..+.
T Consensus 165 LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~--vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 165 LDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIV--VMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCCC
Confidence 995 33444444 49999999999999999999999 999999999999999987654
No 27
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.5e-29 Score=229.91 Aligned_cols=168 Identities=18% Similarity=0.205 Sum_probs=133.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------eEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------------------~i~~i 157 (365)
+++++++|... ...++++++.+++|+.++|+||||||||||++.++|++.|+.|. +|+++
T Consensus 6 ~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~V 84 (235)
T COG1122 6 AENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLV 84 (235)
T ss_pred EEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEE
Confidence 56899999776 33489999999999999999999999999999999999988432 23444
Q ss_pred cCCCcccCC--------------CCCchhhhhh---------------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcC
Q 017797 158 DTSNEIGGD--------------GDIPHSAIGT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (365)
Q Consensus 158 ~~~~ei~~~--------------~~~~~~~~~~---------------~~~~~~~S~g~~~r~~la~al~~~P~vlilDE 208 (365)
.+.++-... .+++...+.. .+....+|+|||||++||.+|+++|++||+||
T Consensus 85 fQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDE 164 (235)
T COG1122 85 FQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDE 164 (235)
T ss_pred EECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcC
Confidence 333321110 1222211100 13455679999999999999999999999999
Q ss_pred CCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 209 IGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 209 p~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
||+++|+ +.+.++.++ |.|+|++||+++++..+||+++ ++++|+++.+|+|++++..
T Consensus 165 Pta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~--vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 165 PTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVV--VLDDGKILADGDPAEIFND 229 (235)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEE--EEECCEEeecCCHHHHhhh
Confidence 9999995 456666666 6999999999999999999999 9999999999999998864
No 28
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.2e-28 Score=218.09 Aligned_cols=166 Identities=19% Similarity=0.248 Sum_probs=134.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD------------------ 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~------------------ 158 (365)
.+|++++...+.. ++++++.+.+|++.+|+|||||||||||+.|+|.+.|+. +.+.+..
T Consensus 4 a~nls~~~~Gr~l--l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~-G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 4 AENLSYSLAGRRL--LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS-GEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred eeeeEEEeeccee--ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCC-CeEeeCCcChhhCCHHHHHHHhhhc
Confidence 5689999988877 999999999999999999999999999999999999884 3444332
Q ss_pred -CCCcccCC---------CCCchhhhh---------------------hhhhccCCCcchhHHHHHHHHHhh------CC
Q 017797 159 -TSNEIGGD---------GDIPHSAIG---------------------TARRMQVPEPSLQHKVMIEAVENH------MP 201 (365)
Q Consensus 159 -~~~ei~~~---------~~~~~~~~~---------------------~~~~~~~~S~g~~~r~~la~al~~------~P 201 (365)
+...+.|. +.+|+..-. ..+....+|||++||+.+||+|++ +|
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 22222221 222221100 013455689999999999999986 45
Q ss_pred CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 202 EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 202 ~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
.+|++||||+.+|+ .++++++..|..|+.+.||++.+..+||+++ +|++||+++.|+|+++++.
T Consensus 161 r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDriv--ll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 161 RWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIV--LLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred ceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheee--eeeCCeEeecCCHHHhcCH
Confidence 69999999999995 5678888999999999999999999999999 9999999999999999863
No 29
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.6e-28 Score=241.61 Aligned_cols=170 Identities=18% Similarity=0.197 Sum_probs=133.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+...+ ++++++.+++|++++|+|||||||||||++|+|++.|+.| +++.++.+.
T Consensus 6 i~~l~~~~~~~~v--l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~ 83 (369)
T PRK11000 6 LRNVTKAYGDVVI--SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQS 83 (369)
T ss_pred EEEEEEEeCCeEE--EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCC
Confidence 6799999987655 9999999999999999999999999999999999988733 134555554
Q ss_pred CcccCCC-------------CCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 161 NEIGGDG-------------DIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 161 ~ei~~~~-------------~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
..+.... ..+... +. . .+....+|+||+||+++|+||+.+|++|++|||+++
T Consensus 84 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~ 163 (369)
T PRK11000 84 YALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (369)
T ss_pred cccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 3322110 011000 00 0 123456799999999999999999999999999999
Q ss_pred HHHH-------HHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchH
Q 017797 213 AEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQK 270 (365)
Q Consensus 213 ~d~~-------~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~ 270 (365)
+|.. .++++.+ .|.|+|++||+.+++..+||+++ +|++|+++..|++++++..+..
T Consensus 164 LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~--vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIV--VLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCccc
Confidence 9953 4555554 48999999999999999999999 9999999999999999876543
No 30
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.96 E-value=1.1e-28 Score=244.33 Aligned_cols=167 Identities=19% Similarity=0.281 Sum_probs=133.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||||+|+|+++|..| +++.++.
T Consensus 6 ~~nls~~y~~~~v--L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~ 83 (402)
T PRK09536 6 VSDLSVEFGDTTV--LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVP 83 (402)
T ss_pred EeeEEEEECCEEE--EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEc
Confidence 6799999988766 9999999999999999999999999999999999988732 2355555
Q ss_pred CCCcccCC---------CCCc---------hh---hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD---------GDIP---------HS---AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~---------~~~~---------~~---~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+.+. ...+ .. .+.. .+....+|+||+||++||+||+++|++|||
T Consensus 84 q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLL 163 (402)
T PRK09536 84 QDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLL 163 (402)
T ss_pred cCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 54333211 0000 00 0000 133456799999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
||||+++|+ ++++++.+.|.|||+++|+.+++..+||+++ ++++|+++..|++++++..
T Consensus 164 DEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii--~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 164 DEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELV--LLADGRVRAAGPPADVLTA 229 (402)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEecCHHHHhCc
Confidence 999999995 3556666679999999999999999999999 9999999999999987653
No 31
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.5e-28 Score=227.28 Aligned_cols=166 Identities=19% Similarity=0.195 Sum_probs=127.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------------eEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------------RVV 155 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~---------------------~i~ 155 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.|. .+.
T Consensus 3 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 3 LRGLTKSFGGRTV--LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred EEEEEEEECCEEE--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 5789999986555 99999999999999999999999999999999999876321 133
Q ss_pred EEcCCCcccCCC--------------CCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 156 IVDTSNEIGGDG--------------DIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 156 ~i~~~~ei~~~~--------------~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
++++...+.... ...... +. . .+....+|+||+||+++|+|++.+|++||+
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llll 160 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLY 160 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 444332211100 000000 00 0 022345799999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||||+++|. +.+.++.+ .|.|||+++|+.+++..+||+++ ++++|+++..|+++++..
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 161 DEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIA--VLYDGKIVAEGTPEELRA 226 (235)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEE--EEECCeEEEecCHHHHcC
Confidence 999999995 34555555 48999999999999999999999 999999999998887653
No 32
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.95 E-value=2.1e-28 Score=239.19 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=134.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+...+ ++++++.+.+|++++|+|||||||||||++|+|+++|+.| +++.++.+.
T Consensus 5 i~~l~~~~~~~~~--l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~ 82 (353)
T PRK10851 5 IANIKKSFGRTQV--LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQH 82 (353)
T ss_pred EEEEEEEeCCeEE--EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecC
Confidence 6799999987655 9999999999999999999999999999999999988743 234555544
Q ss_pred CcccCC---------C--------CCchh----hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcC
Q 017797 161 NEIGGD---------G--------DIPHS----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (365)
Q Consensus 161 ~ei~~~---------~--------~~~~~----~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDE 208 (365)
..+... . ..+.. .+. . .++...+|+||+||+++|+||+.+|++|++||
T Consensus 83 ~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDE 162 (353)
T PRK10851 83 YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDE 162 (353)
T ss_pred cccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 322210 0 00000 000 0 12344579999999999999999999999999
Q ss_pred CCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchH
Q 017797 209 IGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQK 270 (365)
Q Consensus 209 p~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~ 270 (365)
|++++|. +.+.++.++ |.|+|++||+.+++..+||+++ +|++|++++.|++++++..+..
T Consensus 163 P~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~--vl~~G~i~~~g~~~~i~~~p~~ 230 (353)
T PRK10851 163 PFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVV--VMSQGNIEQAGTPDQVWREPAT 230 (353)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCccc
Confidence 9999995 345555554 8999999999999999999999 9999999999999999876543
No 33
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.4e-28 Score=223.78 Aligned_cols=163 Identities=19% Similarity=0.254 Sum_probs=126.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eEEEEcC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDT 159 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-----------------~i~~i~~ 159 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. ++.++++
T Consensus 3 ~~~~~~~~~~~~i--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 3 VENLVKKYGDFEA--VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred EEEEEEEECCEEe--eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 6789999987655 99999999999999999999999999999999999877431 2444444
Q ss_pred CCcccCCC-------------CCchh----hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc
Q 017797 160 SNEIGGDG-------------DIPHS----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 160 ~~ei~~~~-------------~~~~~----~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~ 211 (365)
...+.... ..... .+. . .+....+|+||+||+++++|++.+|++|++||||+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~ 160 (220)
T cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160 (220)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 33221100 01000 000 0 02344579999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHH
Q 017797 212 EAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 263 (365)
Q Consensus 212 ~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~ 263 (365)
++|. +.+.++.++ |.+||+++|+.+++..+||+++ ++.+|+++..+++++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~ 218 (220)
T cd03265 161 GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVA--IIDHGRIIAEGTPEE 218 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEeCCEEEEeCChHH
Confidence 9995 345555555 8999999999999999999999 999999998887765
No 34
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.95 E-value=2e-28 Score=234.83 Aligned_cols=165 Identities=19% Similarity=0.224 Sum_probs=130.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------CeEEEEcC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----------------KRVVIVDT 159 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----------------~~i~~i~~ 159 (365)
+++++++|+...+ ++++++.+++|++++|+|||||||||||++|+|+++|+.| .+++++++
T Consensus 5 ~~~l~~~~~~~~~--l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q 82 (301)
T TIGR03522 5 VSSLTKLYGTQNA--LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPE 82 (301)
T ss_pred EEEEEEEECCEEE--EEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecC
Confidence 6799999987665 9999999999999999999999999999999999988743 13455544
Q ss_pred CCcccCC-------------CCCchh----hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc
Q 017797 160 SNEIGGD-------------GDIPHS----AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 160 ~~ei~~~-------------~~~~~~----~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~ 211 (365)
...+... .+.+.. .... .+....+|+||+||+++|+|++++|++|++||||+
T Consensus 83 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~ 162 (301)
T TIGR03522 83 HNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTT 162 (301)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 4332211 011100 0000 13345579999999999999999999999999999
Q ss_pred HHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 212 EAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 212 ~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++|+. .+..++ ++.|||++||++++++.+||+++ ++++|+++..|+++++..
T Consensus 163 gLD~~~~~~l~~~l~~~~-~~~tiii~sH~l~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 163 GLDPNQLVEIRNVIKNIG-KDKTIILSTHIMQEVEAICDRVI--IINKGKIVADKKLDELSA 221 (301)
T ss_pred cCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHH
Confidence 99963 444444 37999999999999999999999 999999999999998754
No 35
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.95 E-value=2.8e-28 Score=239.70 Aligned_cols=169 Identities=17% Similarity=0.201 Sum_probs=133.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+...+ ++++++.+++|++++|+|||||||||||++|+|+++|+.| +++.++++.
T Consensus 17 l~~l~~~~~~~~~--l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~ 94 (375)
T PRK09452 17 LRGISKSFDGKEV--ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQS 94 (375)
T ss_pred EEEEEEEECCeEE--EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecC
Confidence 6799999987655 9999999999999999999999999999999999998732 235555554
Q ss_pred CcccCCC-------------CCchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 161 NEIGGDG-------------DIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 161 ~ei~~~~-------------~~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
..+.... ..+... +.. .+....+|+||+||+++|+||+.+|++|++|||+++
T Consensus 95 ~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~ 174 (375)
T PRK09452 95 YALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174 (375)
T ss_pred cccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 3322110 011100 000 123445799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 213 AEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 213 ~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
+|. +.++.+.+ .|.|+|++||+.+++..++|+++ +|++|+++..|++++++..+.
T Consensus 175 LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~--vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 175 LDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIV--VMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCcc
Confidence 995 34455544 49999999999999999999999 999999999999999988765
No 36
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.8e-28 Score=237.71 Aligned_cols=170 Identities=14% Similarity=0.159 Sum_probs=130.2
Q ss_pred eeeEEEEECC--cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------------Ce
Q 017797 97 IVGLTCRVGR--AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------------KR 153 (365)
Q Consensus 97 i~~l~~r~~~--~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~---------------------~~ 153 (365)
+++++++|+. .....++++++.+++|++++|+||||||||||+++|+|+++|+.| .+
T Consensus 4 i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 83 (343)
T PRK11153 4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQ 83 (343)
T ss_pred EEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcC
Confidence 6799999972 111249999999999999999999999999999999999988732 13
Q ss_pred EEEEcCCCcccCCC-------------CCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 154 VVIVDTSNEIGGDG-------------DIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 154 i~~i~~~~ei~~~~-------------~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
+.++++...+.... ..+... +. . .+....+|+||+||+++|+||+++|++|+
T Consensus 84 ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLl 163 (343)
T PRK11153 84 IGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL 163 (343)
T ss_pred EEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 44554433221110 011100 00 0 02234579999999999999999999999
Q ss_pred EcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhc
Q 017797 206 VDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (365)
Q Consensus 206 lDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~ 268 (365)
+||||+++|. +.++++.+ .|.|||++||+++++..+||+++ ++++|+++..|++++++..+
T Consensus 164 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~--~l~~G~i~~~g~~~~~~~~~ 232 (343)
T PRK11153 164 CDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVA--VIDAGRLVEQGTVSEVFSHP 232 (343)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCC
Confidence 9999999995 34555554 48999999999999999999999 99999999999999987653
No 37
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.95 E-value=1.5e-28 Score=235.83 Aligned_cols=160 Identities=23% Similarity=0.286 Sum_probs=124.4
Q ss_pred EECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eEEEEcCCCcccC
Q 017797 103 RVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGG 165 (365)
Q Consensus 103 r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-----------------~i~~i~~~~ei~~ 165 (365)
+|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.++++...+..
T Consensus 2 ~y~~~~~--l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 2 VYGDFKA--VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred eeCCeeE--EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence 5665555 99999999999999999999999999999999999887431 2344443322211
Q ss_pred C-------------CCCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH--
Q 017797 166 D-------------GDIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-- 215 (365)
Q Consensus 166 ~-------------~~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-- 215 (365)
. .+.+... +. . .++...+|+||+||+++|+|++++|++||+||||+++|+
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 159 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 0 0000000 00 0 123455799999999999999999999999999999996
Q ss_pred -----HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 216 -----HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 216 -----~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+.+++++++|.|||++||+++++..+||+++ ++++|+++..|+++++..
T Consensus 160 ~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 160 RRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIA--IIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHH
Confidence 3456666679999999999999999999999 999999999999988754
No 38
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.95 E-value=4.8e-28 Score=223.32 Aligned_cols=166 Identities=17% Similarity=0.177 Sum_probs=128.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------eEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------------------~i~~i 157 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.++
T Consensus 3 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 3 AENLSKRYGKRKV--VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred EEEEEEEeCCEEe--eccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 6789999987655 99999999999999999999999999999999999876331 23344
Q ss_pred cCCCcccCCC-------------CCchh----hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCC
Q 017797 158 DTSNEIGGDG-------------DIPHS----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (365)
Q Consensus 158 ~~~~ei~~~~-------------~~~~~----~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp 209 (365)
++...+.... ..... .+. . .+....+|+||+||+++++|++.+|++|++|||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 160 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160 (232)
T ss_pred cCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 3332211100 00000 000 0 022345799999999999999999999999999
Q ss_pred CcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 210 GTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 210 ~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|+++|.. .++++.++|.|||+++|+.+.+..+||+++ ++++|+++..|+++++..
T Consensus 161 t~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 161 FAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAY--IIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEECCeEEEEeCHHHhhc
Confidence 9999953 455566679999999999999999999999 999999999998887653
No 39
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=6.1e-29 Score=224.95 Aligned_cols=167 Identities=19% Similarity=0.245 Sum_probs=133.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc------ccC-----
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE------IGG----- 165 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~e------i~~----- 165 (365)
+++++++|+.-.+ ++++++.+++|++++|+|||||||||++++|+|.++|+ .+.|.+-.+... +..
T Consensus 7 v~~l~k~FGGl~A--l~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~-~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 7 VRGLSKRFGGLTA--VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS-SGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred eccceeecCCEEE--EeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC-CceEEECCcccCCCCHHHHHhcccee
Confidence 6699999999888 99999999999999999999999999999999999998 445555433211 000
Q ss_pred ----CCCCchh------------------------------hh-----------h----hhhhccCCCcchhHHHHHHHH
Q 017797 166 ----DGDIPHS------------------------------AI-----------G----TARRMQVPEPSLQHKVMIEAV 196 (365)
Q Consensus 166 ----~~~~~~~------------------------------~~-----------~----~~~~~~~~S~g~~~r~~la~a 196 (365)
...++.. .. + ..+....+|.|+++++.+|+|
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArA 163 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARA 163 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHH
Confidence 0000000 00 0 002334569999999999999
Q ss_pred HhhCCCEEEEcCCCcHHH-------HHHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhc
Q 017797 197 ENHMPEVIIVDEIGTEAE-------AHACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (365)
Q Consensus 197 l~~~P~vlilDEp~~~~d-------~~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~ 268 (365)
|+.+|++|+||||.+++. .+.++++.+ .|+||+++.|+++.+..+||+++ +|+.|++++.|+|+++.+++
T Consensus 164 La~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~--Vl~~G~~IAeG~P~eV~~dp 241 (250)
T COG0411 164 LATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIV--VLNYGEVIAEGTPEEVRNNP 241 (250)
T ss_pred HhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEE--eccCCcCcccCCHHHHhcCH
Confidence 999999999999998655 356777777 46999999999999999999999 99999999999999998753
No 40
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.2e-28 Score=221.75 Aligned_cols=159 Identities=18% Similarity=0.255 Sum_probs=121.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| .++.++++.
T Consensus 3 ~~~l~~~~~~~~i--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 3 LKGLSKTYGSVRA--LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred eeeeEEEeCCeee--ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 5689999987555 9999999999999999999999999999999999987633 124444443
Q ss_pred CcccCCC-------------CCchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 161 NEIGGDG-------------DIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 161 ~ei~~~~-------------~~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
..+.... ...... +.. .+....+|+||+||+++|+|++.+|++||+||||++
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~ 160 (213)
T cd03259 81 YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160 (213)
T ss_pred hhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 2221100 000000 000 022345799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEec
Q 017797 213 AEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (365)
Q Consensus 213 ~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g 259 (365)
+|. +.+.++++ .|.|||+++|+.+++..+||+++ ++++|+++..|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~--~l~~G~i~~~g 213 (213)
T cd03259 161 LDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIA--VMNEGRIVQVG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEE--EEECCEEEecC
Confidence 995 34555554 48999999999999999999999 99999987654
No 41
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.1e-28 Score=238.19 Aligned_cols=170 Identities=16% Similarity=0.204 Sum_probs=133.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||||+|+|+..|+.| ++++++++.
T Consensus 22 l~~v~~~~~~~~~--l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~ 99 (377)
T PRK11607 22 IRNLTKSFDGQHA--VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQS 99 (377)
T ss_pred EEeEEEEECCEEE--EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 6799999987555 8999999999999999999999999999999999988732 235566554
Q ss_pred CcccCCCC-------------Cchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 161 NEIGGDGD-------------IPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 161 ~ei~~~~~-------------~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
..+..... .+... +. . .++...+|+||+||++|++||+.+|++|++|||+++
T Consensus 100 ~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~ 179 (377)
T PRK11607 100 YALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 179 (377)
T ss_pred CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 43321100 11000 00 0 123445799999999999999999999999999999
Q ss_pred HHHH-------HHHHHH-HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchH
Q 017797 213 AEAH-------ACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQK 270 (365)
Q Consensus 213 ~d~~-------~i~~~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~ 270 (365)
+|.. .++++. +.|.|+|++||+.+++..+||+++ +|++|+++..|++++++..+..
T Consensus 180 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~--vl~~G~i~~~g~~~~~~~~p~~ 243 (377)
T PRK11607 180 LDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIA--IMNRGKFVQIGEPEEIYEHPTT 243 (377)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE--EEeCCEEEEEcCHHHHHhCCcc
Confidence 9953 234444 459999999999999999999999 9999999999999999876543
No 42
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=7.8e-28 Score=223.12 Aligned_cols=166 Identities=18% Similarity=0.206 Sum_probs=129.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.++.+.
T Consensus 5 ~~~l~~~~~~~~i--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 82 (239)
T cd03296 5 VRNVSKRFGDFVA--LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQH 82 (239)
T ss_pred EEeEEEEECCEEe--eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecC
Confidence 6799999987655 9999999999999999999999999999999999987632 124555443
Q ss_pred CcccCC---------C----CC----chh----hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcC
Q 017797 161 NEIGGD---------G----DI----PHS----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (365)
Q Consensus 161 ~ei~~~---------~----~~----~~~----~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDE 208 (365)
..+... . .. ... .+. . .+....+|+||+||+++++|++.+|++||+||
T Consensus 83 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 162 (239)
T cd03296 83 YALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE 162 (239)
T ss_pred CcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 322110 0 00 000 000 0 02234579999999999999999999999999
Q ss_pred CCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 209 IGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 209 p~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|++++|. +.+.+++++ |.|||+++|+.+.+..+||+++ ++++|+++..|+++++..
T Consensus 163 P~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 163 PFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVV--VMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEECCeEEEecCHHHHhc
Confidence 9999995 345555554 8999999999998889999999 999999999999888754
No 43
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=6.3e-28 Score=222.76 Aligned_cols=166 Identities=16% Similarity=0.199 Sum_probs=126.8
Q ss_pred eeeEEEEECCc----ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC--------------------
Q 017797 97 IVGLTCRVGRA----VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------- 152 (365)
Q Consensus 97 i~~l~~r~~~~----~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------------------- 152 (365)
+++++++|+.. .+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|.
T Consensus 4 ~~~l~~~~~~~~~~~~i--l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 4 LKNVSKVFGDTGGKVTA--LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred EecceEEccCCCCceee--eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 67899999765 45 99999999999999999999999999999999999887331
Q ss_pred -eEEEEcCCCcccCCCC-------------Cchh----hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCE
Q 017797 153 -RVVIVDTSNEIGGDGD-------------IPHS----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEV 203 (365)
Q Consensus 153 -~i~~i~~~~ei~~~~~-------------~~~~----~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~v 203 (365)
.+.++++...+..... .... .+. . .+....+|+||+||++++++++.+|++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 161 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 2333333322211000 0000 000 0 022345799999999999999999999
Q ss_pred EEEcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 204 IIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 204 lilDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+|+|||++++|. +.+.+++++ |.|||+++|+.+++..+||+++ ++++|+++..|+++++..
T Consensus 162 llLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 162 LLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVA--VMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred EEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEecCHHHHhc
Confidence 999999999995 345555554 8999999999999989999999 999999999998877643
No 44
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.95 E-value=7e-28 Score=220.65 Aligned_cols=165 Identities=16% Similarity=0.196 Sum_probs=126.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------CeEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------------~~i~~i 157 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.++
T Consensus 3 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 3 VENLNAGYGKSQI--LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred EeeEEeecCCeeE--eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 5689999986655 9999999999999999999999999999999999987732 124444
Q ss_pred cCCCcccCCCCC----------c-hh----hhh-h-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCC
Q 017797 158 DTSNEIGGDGDI----------P-HS----AIG-T-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (365)
Q Consensus 158 ~~~~ei~~~~~~----------~-~~----~~~-~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~ 210 (365)
++...+.....+ . .. ... . ......+|+|++||+++++|++.+|++|++|||+
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 433221110000 0 00 000 0 0123347999999999999999999999999999
Q ss_pred cHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHH
Q 017797 211 TEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (365)
Q Consensus 211 ~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~ 265 (365)
+++|. +.+.++.++|.|||+++|+.+++..+||+++ ++++|+++..|+++++.
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAY--VLERGRVVLEGTAAELL 220 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEE--EeeCCeEEEeCCHHHHh
Confidence 99995 3455556678999999999999999999999 89999999988877654
No 45
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.2e-27 Score=214.92 Aligned_cols=167 Identities=16% Similarity=0.205 Sum_probs=134.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------CeEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------------~~i~~i 157 (365)
+++++..|+...+ +.++++.+++|+++.|+||||+||||||++|+|++++..| ..+.++
T Consensus 6 v~~l~~~YG~~~~--L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~V 83 (237)
T COG0410 6 VENLSAGYGKIQA--LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYV 83 (237)
T ss_pred EEeEeecccceeE--EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeC
Confidence 7799999999777 9999999999999999999999999999999999987632 234555
Q ss_pred cCCCcccCC---------CCCchh-----------hhh--------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCC
Q 017797 158 DTSNEIGGD---------GDIPHS-----------AIG--------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (365)
Q Consensus 158 ~~~~ei~~~---------~~~~~~-----------~~~--------~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp 209 (365)
++..++... +.+... .+. ..++...+|+|+||.+++++||+.+|++|+||||
T Consensus 84 PegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEP 163 (237)
T COG0410 84 PEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEP 163 (237)
T ss_pred cccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCC
Confidence 554443211 000000 000 0144567899999999999999999999999999
Q ss_pred CcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 210 GTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 210 ~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+.++-+ +++++++++ |.||+.+.++...+..++|+.+ +|.+|+++..|+.+++..+
T Consensus 164 s~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~y--vle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 164 SEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGY--VLENGRIVLSGTAAELLAD 227 (237)
T ss_pred ccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEE--EEeCCEEEEecCHHHHhcC
Confidence 998764 566777755 8899999999999999999999 9999999999999998764
No 46
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.95 E-value=1.2e-27 Score=223.16 Aligned_cols=166 Identities=17% Similarity=0.186 Sum_probs=128.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------------ 152 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------------ 152 (365)
+++++++|++..+ ++++++.+++|++++|+||||||||||+++|+|+++|+.|.
T Consensus 6 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK11264 6 VKNLVKKFHGQTV--LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQL 83 (250)
T ss_pred EeceEEEECCeee--eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHh
Confidence 6789999986555 99999999999999999999999999999999999876321
Q ss_pred --eEEEEcCCCcccCCCCC--------------chhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCC
Q 017797 153 --RVVIVDTSNEIGGDGDI--------------PHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 153 --~i~~i~~~~ei~~~~~~--------------~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
.+.++++...+.....+ .... +. . ......+|+||+||+++|+|++.+|
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p 163 (250)
T PRK11264 84 RQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRP 163 (250)
T ss_pred hhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCC
Confidence 23333332211110000 0000 00 0 0223457999999999999999999
Q ss_pred CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 202 EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 202 ~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++||+||||+++|. +.+.++.+.|.+||+++|+.+++..+||+++ ++++|+++..|++++++.
T Consensus 164 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 164 EVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAI--FMDQGRIVEQGPAKALFA 233 (250)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEECCEEEEeCCHHHHhc
Confidence 99999999999995 3445556679999999999999999999999 999999999999888764
No 47
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.95 E-value=8.6e-28 Score=222.18 Aligned_cols=166 Identities=17% Similarity=0.190 Sum_probs=128.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------eEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------------------~i~~i 157 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.|. .+.++
T Consensus 3 ~~~l~~~~~~~~~--l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 3 VRGLTKRFGGLVA--LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred eeeeEEEECCEEE--ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 5689999986555 99999999999999999999999999999999999876331 24444
Q ss_pred cCCCcccCC-------------C-CC----------chh---hhhh-----------hhhccCCCcchhHHHHHHHHHhh
Q 017797 158 DTSNEIGGD-------------G-DI----------PHS---AIGT-----------ARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 158 ~~~~ei~~~-------------~-~~----------~~~---~~~~-----------~~~~~~~S~g~~~r~~la~al~~ 199 (365)
++...+... . .. ... .+.. .+....+|+||+||+++|+|+..
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 160 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 443222110 0 00 000 0000 02234579999999999999999
Q ss_pred CCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 200 MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+|++|++||||+++|. +.+.++.+.|.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 161 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 161 DPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVT--VLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEeCCEEEeecCHHHhcc
Confidence 9999999999999995 3455555678999999999999999999999 999999999998887653
No 48
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1e-27 Score=230.21 Aligned_cols=168 Identities=14% Similarity=0.168 Sum_probs=129.5
Q ss_pred eeeEEEEECCccc---CcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeE-------------------
Q 017797 97 IVGLTCRVGRAVS---GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV------------------- 154 (365)
Q Consensus 97 i~~l~~r~~~~~~---~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i------------------- 154 (365)
+++++++|+.... ..++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~ 83 (305)
T PRK13651 5 VKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG-TIEWIFKDEKNKKKTKEKEKV 83 (305)
T ss_pred EEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EEEEeceeccccccccccccc
Confidence 6799999975321 249999999999999999999999999999999999988743 33
Q ss_pred ------------------------EEEcCCCc--ccCC------------CCCchhhh-----------h-----hhhhc
Q 017797 155 ------------------------VIVDTSNE--IGGD------------GDIPHSAI-----------G-----TARRM 180 (365)
Q Consensus 155 ------------------------~~i~~~~e--i~~~------------~~~~~~~~-----------~-----~~~~~ 180 (365)
+++++..+ +... .+++.... + ..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 163 (305)
T PRK13651 84 LEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSP 163 (305)
T ss_pred ccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCh
Confidence 33333221 1000 00110000 0 00234
Q ss_pred cCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCc
Q 017797 181 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 253 (365)
Q Consensus 181 ~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g 253 (365)
..+|+||+||+++|++|+++|++||+||||+++|. +.+.++.+.|.|||++||+++.+..+||+++ ++++|
T Consensus 164 ~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~--vl~~G 241 (305)
T PRK13651 164 FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI--FFKDG 241 (305)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE--EEECC
Confidence 45799999999999999999999999999999995 3455566679999999999999999999999 99999
Q ss_pred EEEEecCHHHHHHh
Q 017797 254 DTVTLGDEEARARR 267 (365)
Q Consensus 254 ~iv~~g~~~~~~~~ 267 (365)
++++.|++++++..
T Consensus 242 ~i~~~g~~~~~~~~ 255 (305)
T PRK13651 242 KIIKDGDTYDILSD 255 (305)
T ss_pred EEEEECCHHHHhcC
Confidence 99999999998754
No 49
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.95 E-value=4.5e-28 Score=212.19 Aligned_cols=151 Identities=17% Similarity=0.205 Sum_probs=118.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCC--Cchhhh
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGD--IPHSAI 174 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~--~~~~~~ 174 (365)
+++++++|....+ ++++++.+++|++++|+||||||||||+++|+|+++|+. +.|.+-+.+ +..... .....+
T Consensus 3 ~~~l~~~~~~~~v--l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~-G~v~~~g~~--~~~~~~~~~~~~~i 77 (163)
T cd03216 3 LRGITKRFGGVKA--LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS-GEILVDGKE--VSFASPRDARRAGI 77 (163)
T ss_pred EEEEEEEECCeEE--EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-eEEEECCEE--CCcCCHHHHHhcCe
Confidence 5689999987655 999999999999999999999999999999999998874 455432211 110000 000011
Q ss_pred hhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHH
Q 017797 175 GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (365)
Q Consensus 175 ~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~ 247 (365)
+ ....+|+||+||+++++|+..+|++|++|||++++|. +.++++.++|.|+|+++|+.+++..+||+++
T Consensus 78 ~---~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~- 153 (163)
T cd03216 78 A---MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVT- 153 (163)
T ss_pred E---EEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE-
Confidence 1 1112899999999999999999999999999999995 3455566679999999999998888999999
Q ss_pred HHHcCcEEEE
Q 017797 248 DLIGGVDTVT 257 (365)
Q Consensus 248 ~ll~~g~iv~ 257 (365)
++++|++++
T Consensus 154 -~l~~g~i~~ 162 (163)
T cd03216 154 -VLRDGRVVG 162 (163)
T ss_pred -EEECCEEEe
Confidence 889998864
No 50
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=8.7e-28 Score=220.03 Aligned_cols=161 Identities=14% Similarity=0.141 Sum_probs=123.0
Q ss_pred eeeEEEEECC----cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------CeEEEEcC
Q 017797 97 IVGLTCRVGR----AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------KRVVIVDT 159 (365)
Q Consensus 97 i~~l~~r~~~----~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------~~i~~i~~ 159 (365)
+++++++|+. ..+ ++++++.+++|++++|+||||||||||+++|+|++.|+.| ..+.++++
T Consensus 3 ~~~l~~~~~~~~~~~~i--l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 3 VRNVSKTYGGGGGAVTA--LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred EEEEEEEcCCCCcceEE--EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 5689999976 445 9999999999999999999999999999999999987643 23455554
Q ss_pred CCcccCCCC-------------Cchh----hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc
Q 017797 160 SNEIGGDGD-------------IPHS----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 160 ~~ei~~~~~-------------~~~~----~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~ 211 (365)
...+..... .... .+. . .+....+|+||+||+++|+|++.+|++||+||||+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~ 160 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFS 160 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 332211000 0000 000 0 12345679999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHc--CcEEEEecCH
Q 017797 212 EAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIG--GVDTVTLGDE 261 (365)
Q Consensus 212 ~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~--~g~iv~~g~~ 261 (365)
++|. +.+.++.+ .|.|||+++|+.+++..+||+++ +++ +|+++..++.
T Consensus 161 ~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~~~G~i~~~~~~ 218 (220)
T cd03293 161 ALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVV--VLSARPGRIVAEVEV 218 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEE--EEECCCCEEEEEEEe
Confidence 9995 34555543 48999999999998889999999 888 7999887654
No 51
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.2e-27 Score=226.00 Aligned_cols=166 Identities=17% Similarity=0.152 Sum_probs=128.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC--------------------eEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------RVVI 156 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~--------------------~i~~ 156 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.+
T Consensus 4 ~~~l~~~~~~~~i--l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 81 (271)
T PRK13638 4 TSDLWFRYQDEPV--LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVAT 81 (271)
T ss_pred EEEEEEEcCCccc--ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEE
Confidence 6799999986555 99999999999999999999999999999999999887431 2334
Q ss_pred EcCCCccc-CCC-------------CCchhhh----h-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 157 VDTSNEIG-GDG-------------DIPHSAI----G-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 157 i~~~~ei~-~~~-------------~~~~~~~----~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
+.+..... ... ....... . . .+....+|+||+||+++|++|+.+|++||+|
T Consensus 82 v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLD 161 (271)
T PRK13638 82 VFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLD 161 (271)
T ss_pred EeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 43322100 000 0000000 0 0 0223457999999999999999999999999
Q ss_pred CCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 208 EIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 208 Ep~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|||+++|. +.+.++.++|.|||+++|+.+++..+||+++ ++++|+++..|+++++..
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 162 EPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVY--VLRQGQILTHGAPGEVFA 225 (271)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhc
Confidence 99999995 3455556679999999999999989999999 999999999999988765
No 52
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.95 E-value=1e-27 Score=217.61 Aligned_cols=159 Identities=17% Similarity=0.198 Sum_probs=122.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| ..+.++++.
T Consensus 3 ~~~l~~~~~~~~~--l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 3 TNDLTKTYGKKRV--LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred EEEEEEEECCeEe--EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 6789999976555 9999999999999999999999999999999999987643 124444443
Q ss_pred CcccCCCCC-------------chhhhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH
Q 017797 161 NEIGGDGDI-------------PHSAIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 216 (365)
Q Consensus 161 ~ei~~~~~~-------------~~~~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~ 216 (365)
..+.....+ ....+.. .+....+|+|++||++++++++.+|++|++||||+++|..
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~ 160 (208)
T cd03268 81 PGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPD 160 (208)
T ss_pred CccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHH
Confidence 322111000 0000000 1224457999999999999999999999999999999953
Q ss_pred -------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEec
Q 017797 217 -------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (365)
Q Consensus 217 -------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g 259 (365)
.+.++++.|.|+|++||+.+++..+||+++ ++++|+++..|
T Consensus 161 ~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~--~l~~g~i~~~g 208 (208)
T cd03268 161 GIKELRELILSLRDQGITVLISSHLLSEIQKVADRIG--IINKGKLIEEG 208 (208)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEE--EEECCEEEecC
Confidence 445555678999999999999989999999 99999988654
No 53
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.4e-27 Score=221.99 Aligned_cols=173 Identities=18% Similarity=0.206 Sum_probs=134.2
Q ss_pred eeeEEEEECCcc--cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc-cC------------------------
Q 017797 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-DE------------------------ 149 (365)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~-~~------------------------ 149 (365)
|++|++.|.... +.+++++++.+.+|++++|+|.+|||||||.++|+|+++ +.
T Consensus 4 v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~ 83 (316)
T COG0444 4 VKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELR 83 (316)
T ss_pred EeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHH
Confidence 678999886532 356999999999999999999999999999999999997 32
Q ss_pred --CCCeEEEEcCCCcccCC----------------CCC-chh-----hhhhh-------------hhccCCCcchhHHHH
Q 017797 150 --FQKRVVIVDTSNEIGGD----------------GDI-PHS-----AIGTA-------------RRMQVPEPSLQHKVM 192 (365)
Q Consensus 150 --~~~~i~~i~~~~ei~~~----------------~~~-~~~-----~~~~~-------------~~~~~~S~g~~~r~~ 192 (365)
.+++|.+++|.+.-... ... ... ....+ .....+||||+||++
T Consensus 84 ~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~ 163 (316)
T COG0444 84 KIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVM 163 (316)
T ss_pred hhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHH
Confidence 12344555443321110 000 000 00000 223356999999999
Q ss_pred HHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 193 IEAVENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 193 la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
+|.|++.+|++||.||||+++|. ++++++.+ .|.++|++|||+..+..+||+++ +|..|++|+.|+.+++
T Consensus 164 IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~--VMYaG~iVE~g~~~~i 241 (316)
T COG0444 164 IAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVA--VMYAGRIVEEGPVEEI 241 (316)
T ss_pred HHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEE--EEECcEEEEeCCHHHH
Confidence 99999999999999999999994 56666665 79999999999999999999999 9999999999999999
Q ss_pred HHhchHH
Q 017797 265 ARRCQKS 271 (365)
Q Consensus 265 ~~~~~~~ 271 (365)
+.++...
T Consensus 242 ~~~P~HP 248 (316)
T COG0444 242 FKNPKHP 248 (316)
T ss_pred hcCCCCh
Confidence 9875533
No 54
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.7e-27 Score=220.86 Aligned_cols=165 Identities=15% Similarity=0.156 Sum_probs=126.4
Q ss_pred eeeEEEEECC-cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------------eE
Q 017797 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------------RV 154 (365)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~---------------------~i 154 (365)
+++++++|+. ..+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+
T Consensus 3 ~~~l~~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 3 VENLSKTYPNGKKA--LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred EeeEEEecCCccEE--EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 5689999976 455 99999999999999999999999999999999999876331 13
Q ss_pred EEEcCCCcccCCCCC---------------------c-hh---hhhh-----------hhhccCCCcchhHHHHHHHHHh
Q 017797 155 VIVDTSNEIGGDGDI---------------------P-HS---AIGT-----------ARRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 155 ~~i~~~~ei~~~~~~---------------------~-~~---~~~~-----------~~~~~~~S~g~~~r~~la~al~ 198 (365)
.++++...+.....+ . .. .+.. .+....+|+||+||+++|+|++
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 160 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 333332221110000 0 00 0000 0223457999999999999999
Q ss_pred hCCCEEEEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHH
Q 017797 199 HMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (365)
Q Consensus 199 ~~P~vlilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~ 265 (365)
.+|++||+|||++++|. +.+.++.+ .|.|||+++|+.+++..+||+++ ++++|+++..|+++++.
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIV--GLKDGRIVFDGPPAELT 233 (241)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEeecCHHHhh
Confidence 99999999999999995 34555554 48999999999999998999999 99999999999988763
No 55
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.95 E-value=1.5e-27 Score=217.28 Aligned_cols=159 Identities=18% Similarity=0.265 Sum_probs=121.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| .++.++.+.
T Consensus 3 ~~~l~~~~~~~~~--l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 3 LENVTKRFGNVTA--LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred EEeeEEEECCeee--eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 5689999987655 9999999999999999999999999999999999987632 124454443
Q ss_pred CcccCCCC-------------Cchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 161 NEIGGDGD-------------IPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 161 ~ei~~~~~-------------~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
..+..... ..... +. . .+....+|+||+||++++++++.+|++|++|||+++
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~ 160 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred hhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 22211000 00000 00 0 022345799999999999999999999999999999
Q ss_pred HHHH-------HHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEec
Q 017797 213 AEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (365)
Q Consensus 213 ~d~~-------~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g 259 (365)
+|.. .++++++ .|.|||+++|+.+++..+||+++ ++++|++++.|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~--~l~~g~~~~~g 213 (213)
T cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIA--VMNDGQIQQIG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE--EEECCEEEecC
Confidence 9953 4555554 48999999999999999999999 89999998764
No 56
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=8e-28 Score=217.95 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=119.6
Q ss_pred eeeEEEEECC-cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------CeEEEEcCC
Q 017797 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~---------------~~i~~i~~~ 160 (365)
+++++++|+. ..+ ++++++.+++|++++|+|||||||||||++|+|+++|+.| .++.++++.
T Consensus 2 ~~~l~~~~~~~~~~--l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKGTEI--LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCcCce--eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 4689999976 555 9999999999999999999999999999999999988743 134555544
Q ss_pred Cc--ccCC----------CCCc--hhhhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH
Q 017797 161 NE--IGGD----------GDIP--HSAIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (365)
Q Consensus 161 ~e--i~~~----------~~~~--~~~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~ 215 (365)
.. +... .... ...+.. .+....+|+||+||+++|+|+..+|++|++|||++++|.
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 159 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH
Confidence 31 1100 0000 001000 023445799999999999999999999999999999995
Q ss_pred -------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEE
Q 017797 216 -------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV 256 (365)
Q Consensus 216 -------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv 256 (365)
+.+.+++++|.|||++||+.+++..+||+++ ++++|++|
T Consensus 160 ~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~~G~iv 205 (205)
T cd03226 160 KNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVL--LLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEC
Confidence 3455555679999999999999988999999 88888864
No 57
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.7e-27 Score=220.50 Aligned_cols=166 Identities=14% Similarity=0.164 Sum_probs=128.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------eEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------------------~i~~i 157 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.++
T Consensus 8 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 85 (237)
T PRK11614 8 FDKVSAHYGKIQA--LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIV 85 (237)
T ss_pred EEeEEEeeCCcee--eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEe
Confidence 6799999976555 99999999999999999999999999999999999876331 23344
Q ss_pred cCCCcccCCCCC----------ch-h----hh----h----h----hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCC
Q 017797 158 DTSNEIGGDGDI----------PH-S----AI----G----T----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (365)
Q Consensus 158 ~~~~ei~~~~~~----------~~-~----~~----~----~----~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~ 210 (365)
.+...+.....+ .. . .+ . . ......+|+|++||++++++++.+|++|++||||
T Consensus 86 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt 165 (237)
T PRK11614 86 PEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165 (237)
T ss_pred ccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 332221110000 00 0 00 0 0 0223457999999999999999999999999999
Q ss_pred cHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 211 TEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 211 ~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+++|. +.+.++.++|.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 166 LGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGY--VLENGHVVLEDTGDALLA 226 (237)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEE--EEeCCEEEeeCCHHHHhc
Confidence 99995 3455556679999999999999999999999 999999999999988764
No 58
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.95 E-value=9.2e-28 Score=234.84 Aligned_cols=163 Identities=15% Similarity=0.178 Sum_probs=126.2
Q ss_pred EECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------------CeEEEEcCC
Q 017797 103 RVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------KRVVIVDTS 160 (365)
Q Consensus 103 r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------------~~i~~i~~~ 160 (365)
+|+...+ ++++++.+++|++++|+||||||||||+++|+|++.|+.| ..+.|+.+.
T Consensus 2 ~~~~~~~--l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 2 KTGGKKG--VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred ccCCcee--EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 4555555 8999999999999999999999999999999999998732 234555444
Q ss_pred CcccCCCCCchhh-----------------hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 161 NEIGGDGDIPHSA-----------------IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 161 ~ei~~~~~~~~~~-----------------~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
..+.....+.++. +. . .+....+|+||+||+++|+||..+|++|++|||+++
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 3322111111100 00 0 023445799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 213 AEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 213 ~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
+|+ +.+..+.+ .|.|||++||+++++..+||+++ +|.+|+++..|++++++..+.
T Consensus 160 LD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~--vl~~G~iv~~g~~~ei~~~p~ 222 (363)
T TIGR01186 160 LDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIV--IMKAGEIVQVGTPDEILRNPA 222 (363)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEeCCEEEeeCCHHHHHhCcc
Confidence 996 34455544 48999999999999999999999 999999999999999887543
No 59
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=9.5e-28 Score=226.57 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=128.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------------CeE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------KRV 154 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------------~~i 154 (365)
+.+++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| .++
T Consensus 27 ~~~~~~~~~~~~i--l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 27 KEEILKKTGQTVG--VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhcCCceE--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 4478888888776 9999999999999999999999999999999999987632 124
Q ss_pred EEEcCCCcccCCCC-------------Cchh----hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 155 VIVDTSNEIGGDGD-------------IPHS----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 155 ~~i~~~~ei~~~~~-------------~~~~----~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
.++++...+..... .... .+. . .+....+|+||+||+++|+|++.+|++||+
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44443322211000 0000 000 0 022345799999999999999999999999
Q ss_pred cCCCcHHHHH-------HHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 207 DEIGTEAEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 207 DEp~~~~d~~-------~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
||||+++|.. .+.++.+ .|.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIA--IMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEECCEEEEeCCHHHHHhC
Confidence 9999999963 4555544 48999999999999889999999 9999999999999887653
No 60
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.95 E-value=2.2e-27 Score=224.06 Aligned_cols=166 Identities=17% Similarity=0.223 Sum_probs=128.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------------eEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------------RVV 155 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~---------------------~i~ 155 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.
T Consensus 10 ~~~l~~~~~~~~i--l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 87 (269)
T PRK11831 10 MRGVSFTRGNRCI--FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMS 87 (269)
T ss_pred EeCeEEEECCEEE--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEE
Confidence 6789999986655 99999999999999999999999999999999999876321 234
Q ss_pred EEcCCCcccCCCC--------------Cchh----hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 156 IVDTSNEIGGDGD--------------IPHS----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 156 ~i~~~~ei~~~~~--------------~~~~----~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
++++...+..... .... .+. . .+....+|+||+||+++|+|++.+|++||+
T Consensus 88 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 167 (269)
T PRK11831 88 MLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMF 167 (269)
T ss_pred EEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4443322211000 0000 000 0 022345799999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||||+++|. +.+.++.++ |.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 168 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 168 DEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAY--IVADKKIVAHGSAQALQA 233 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEE--EEECCEEEEeCCHHHHhc
Confidence 999999995 345555544 8999999999999999999999 999999999999988765
No 61
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=2.6e-27 Score=219.71 Aligned_cols=166 Identities=14% Similarity=0.173 Sum_probs=128.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC--------------------eEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------RVVI 156 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~--------------------~i~~ 156 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. ++.+
T Consensus 4 ~~~l~~~~~~~~i--l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 81 (240)
T PRK09493 4 FKNVSKHFGPTQV--LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGM 81 (240)
T ss_pred EEeEEEEECCeEE--eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEE
Confidence 6789999986555 99999999999999999999999999999999999876331 2344
Q ss_pred EcCCCcccCCCCC--------------chhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 157 VDTSNEIGGDGDI--------------PHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 157 i~~~~ei~~~~~~--------------~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
+.+...+.....+ .... +. . .+....+|+||+||+++|+|++.+|++|++|
T Consensus 82 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 161 (240)
T PRK09493 82 VFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFD 161 (240)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4433222110000 0000 00 0 0223457999999999999999999999999
Q ss_pred CCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 208 EIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 208 Ep~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||++++|. +.+..+.++|.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 162 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 162 EPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLI--FIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEeeCCHHHHhc
Confidence 99999995 3455556679999999999999989999999 999999999998887754
No 62
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.95 E-value=2e-27 Score=218.98 Aligned_cols=164 Identities=16% Similarity=0.185 Sum_probs=126.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------CeEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------------~~i~~i 157 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| .++.++
T Consensus 3 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 3 VSNLNVYYGQSHI--LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred EEeEEEEeCCeEE--ecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 5789999987655 9999999999999999999999999999999999987633 124444
Q ss_pred cCCCcccCCCCC-------------c-hhhhhh------------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc
Q 017797 158 DTSNEIGGDGDI-------------P-HSAIGT------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 158 ~~~~ei~~~~~~-------------~-~~~~~~------------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~ 211 (365)
++...+.....+ . ...... .+....+|+|++||++++++++.+|++|++|||++
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~ 160 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTE 160 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 433222110000 0 000000 02233479999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 212 EAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 212 ~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
++|. +.+.+++++ |.|||++||+.+++..+||+++ ++++|+++..|+++++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~--~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 161 GIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYY--VMERGRVVASGAGDEL 219 (230)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHc
Confidence 9995 345555554 8999999999999999999999 9999999999998876
No 63
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.1e-27 Score=220.70 Aligned_cols=167 Identities=14% Similarity=0.124 Sum_probs=129.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.+++
T Consensus 6 ~~~l~~~~~~~~~--l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 83 (241)
T PRK14250 6 FKEVSYSSFGKEI--LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVF 83 (241)
T ss_pred EEeEEEEeCCeee--eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEe
Confidence 6789999976555 9999999999999999999999999999999999987743 1234444
Q ss_pred CCCcccCC------------CCCchhhh-------hh-----hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHH
Q 017797 159 TSNEIGGD------------GDIPHSAI-------GT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (365)
Q Consensus 159 ~~~ei~~~------------~~~~~~~~-------~~-----~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d 214 (365)
+...+... .......+ +. .+....+|+||+||+++|+|++.+|++||+|||++++|
T Consensus 84 q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 163 (241)
T PRK14250 84 QQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALD 163 (241)
T ss_pred cCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 43222110 00000000 00 12344579999999999999999999999999999999
Q ss_pred HH-------HHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 215 AH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 215 ~~-------~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
.. .+..+++ .|.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 164 ~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 164 PTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTA--FLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEE--EEeCCEEEEeCCHHHHhcC
Confidence 53 4555555 49999999999999989999999 9999999999999887653
No 64
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=6.6e-29 Score=217.97 Aligned_cols=166 Identities=15% Similarity=0.179 Sum_probs=133.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------- 156 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~-------------------- 156 (365)
+.+++|+|++..+ ++++++.+.+|++++++|||||||||++.++.|+++|+.| +|..
T Consensus 7 a~~l~K~y~kr~V--v~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G-~i~ld~~diT~lPm~~RArlGigY 83 (243)
T COG1137 7 AENLAKSYKKRKV--VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG-KILLDDEDITKLPMHKRARLGIGY 83 (243)
T ss_pred ehhhhHhhCCeee--eeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCc-eEEECCcccccCChHHHhhcCccc
Confidence 5589999999988 9999999999999999999999999999999999999843 3333
Q ss_pred EcCCCcccCCCCCchhh-------------------hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 157 VDTSNEIGGDGDIPHSA-------------------IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 157 i~~~~ei~~~~~~~~~~-------------------~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
++|...+...-.+..+. +.. ......+|||+++|+.+|+||+.+|++|+|
T Consensus 84 LpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLL 163 (243)
T COG1137 84 LPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILL 163 (243)
T ss_pred ccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEe
Confidence 22222111000000000 000 022335699999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|||+++.|+ .++..+++.|..|++|-|+..+.-.+||+.+ ++..|++++.|+|+++..+
T Consensus 164 DEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaY--Ii~~G~vla~G~p~ei~~n 229 (243)
T COG1137 164 DEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAY--IISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred cCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEE--EEecCeEEecCCHHHHhcC
Confidence 999999885 4667788999999999999999999999999 9999999999999999875
No 65
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.95 E-value=1.9e-27 Score=217.26 Aligned_cols=158 Identities=21% Similarity=0.211 Sum_probs=121.4
Q ss_pred eeeEEEEECCc----ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------CeEE
Q 017797 97 IVGLTCRVGRA----VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----------------KRVV 155 (365)
Q Consensus 97 i~~l~~r~~~~----~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----------------~~i~ 155 (365)
+++++++|+.. .+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| ..+.
T Consensus 4 ~~~v~~~~~~~~~~~~i--l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 4 ADALTKRFRDVKKTVQA--VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred EEEEEEecCCCCcccee--ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 56899999765 44 9999999999999999999999999999999999988743 1244
Q ss_pred EEcCCCcccCCCCC-------------chhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 156 IVDTSNEIGGDGDI-------------PHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 156 ~i~~~~ei~~~~~~-------------~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
++.+...+.....+ .... +. . .+....+|+||+||+++++|++.+|++|++|
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD 161 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 44443322111000 0000 00 0 0233457999999999999999999999999
Q ss_pred CCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEe
Q 017797 208 EIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (365)
Q Consensus 208 Ep~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~ 258 (365)
||++++|. +.+.++.++|.|||+++|+.+++..+||+++ ++++|+++..
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~--~l~~G~i~~~ 217 (218)
T cd03266 162 EPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVV--VLHRGRVVYE 217 (218)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEE--EEECCEEeec
Confidence 99999995 3455556679999999999999999999999 8999998764
No 66
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.95 E-value=9.5e-28 Score=209.14 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=125.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------------CeEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------------KRVV 155 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~---------------------~~i~ 155 (365)
+++++|+|+.. ..+++++++.+++|+++-|+||+|||||||||.|.+...|+.| ++|+
T Consensus 4 f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IG 82 (223)
T COG2884 4 FENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIG 82 (223)
T ss_pred ehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheee
Confidence 56899999887 3469999999999999999999999999999999999999842 3444
Q ss_pred EEcCCCcccCCC-------------CCchhhhhh-----h----------hhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 156 IVDTSNEIGGDG-------------DIPHSAIGT-----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 156 ~i~~~~ei~~~~-------------~~~~~~~~~-----~----------~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
++.+...+.... +.+...+.. . .-...+|+|+|||++||+|+..+|++|+.|
T Consensus 83 vVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlAD 162 (223)
T COG2884 83 VVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLAD 162 (223)
T ss_pred eEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeec
Confidence 444433221111 111111100 0 123457999999999999999999999999
Q ss_pred CCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEec
Q 017797 208 EIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (365)
Q Consensus 208 Ep~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g 259 (365)
|||.++|+ .++.++...|+||+++||+.+.++.+..+++ .+.+|+++...
T Consensus 163 EPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl--~l~~Grl~~d~ 219 (223)
T COG2884 163 EPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVL--ALEDGRLVRDE 219 (223)
T ss_pred CCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEE--EEeCCEEEecc
Confidence 99999995 4566667889999999999999999999999 89999998663
No 67
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.3e-27 Score=225.98 Aligned_cols=169 Identities=17% Similarity=0.204 Sum_probs=130.1
Q ss_pred eeeEEEEECCcc---cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------------Ce
Q 017797 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--------------------KR 153 (365)
Q Consensus 97 i~~l~~r~~~~~---~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~--------------------~~ 153 (365)
+++++++|+... ...++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (287)
T PRK13637 5 IENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKK 84 (287)
T ss_pred EEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhc
Confidence 678999997521 1249999999999999999999999999999999999987733 13
Q ss_pred EEEEcCCCc--ccCC------------CCCchhh----h-------hh------hhhccCCCcchhHHHHHHHHHhhCCC
Q 017797 154 VVIVDTSNE--IGGD------------GDIPHSA----I-------GT------ARRMQVPEPSLQHKVMIEAVENHMPE 202 (365)
Q Consensus 154 i~~i~~~~e--i~~~------------~~~~~~~----~-------~~------~~~~~~~S~g~~~r~~la~al~~~P~ 202 (365)
++|+++... +... ..+.... + +. .+....+|+||+||+++|+||+.+|+
T Consensus 85 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~ 164 (287)
T PRK13637 85 VGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPK 164 (287)
T ss_pred eEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 455555432 1000 0011000 0 00 02234579999999999999999999
Q ss_pred EEEEcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 203 VIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 203 vlilDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+||+||||+++|+ +.+.++.++ |.|||++||+++++..+||+++ ++++|++++.|++++++..
T Consensus 165 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~--~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 165 ILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRII--VMNKGKCELQGTPREVFKE 235 (287)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhC
Confidence 9999999999995 345566554 9999999999999988999999 9999999999999998753
No 68
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.1e-27 Score=226.25 Aligned_cols=168 Identities=15% Similarity=0.155 Sum_probs=129.1
Q ss_pred eeeEEEEECCcc---cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------------
Q 017797 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------- 152 (365)
Q Consensus 97 i~~l~~r~~~~~---~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~--------------------- 152 (365)
+++++++|++.. ...++++++.+.+|++++|+||||||||||+++|+|+++|+.|.
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (287)
T PRK13641 5 FENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLR 84 (287)
T ss_pred EEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH
Confidence 679999997421 12499999999999999999999999999999999999887431
Q ss_pred -eEEEEcCCCc--ccCC------------CCCchhh----h-------hh-----hhhccCCCcchhHHHHHHHHHhhCC
Q 017797 153 -RVVIVDTSNE--IGGD------------GDIPHSA----I-------GT-----ARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 153 -~i~~i~~~~e--i~~~------------~~~~~~~----~-------~~-----~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
.+.++.+... +... ....... + +. .+....+|+||+||+++|+|++.+|
T Consensus 85 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p 164 (287)
T PRK13641 85 KKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEP 164 (287)
T ss_pred hceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 2444444321 1100 0000000 0 00 1224457999999999999999999
Q ss_pred CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 202 EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 202 ~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++||+||||+++|. +.+.++.+.|.|||++||+++.+..+||+++ ++++|+++..|+++++..
T Consensus 165 ~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 165 EILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVL--VLEHGKLIKHASPKEIFS 234 (287)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhc
Confidence 99999999999995 3455566679999999999999999999999 999999999999998765
No 69
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.95 E-value=2.7e-27 Score=219.13 Aligned_cols=166 Identities=16% Similarity=0.228 Sum_probs=127.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eEEEEcC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDT 159 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-----------------~i~~i~~ 159 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.++++
T Consensus 4 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q 81 (236)
T TIGR03864 4 VAGLSFAYGARRA--LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQ 81 (236)
T ss_pred EEeeEEEECCEEE--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCC
Confidence 5689999986655 99999999999999999999999999999999999887431 2344444
Q ss_pred CCcccCCC-------------CCchh----hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc
Q 017797 160 SNEIGGDG-------------DIPHS----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 160 ~~ei~~~~-------------~~~~~----~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~ 211 (365)
...+.... ..... .+. . .+....+|+||+||+++++|++.+|++|++|||++
T Consensus 82 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~ 161 (236)
T TIGR03864 82 QPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTV 161 (236)
T ss_pred CCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 32221100 00000 000 0 02234579999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 212 EAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 212 ~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
++|. +.+.++++ .|.|+|+++|+.+++.. ||+++ ++++|+++..|+++++...
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~--~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 162 GLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLV--VLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEE--EEeCCeEEEeCCHHHHHHH
Confidence 9995 34555553 58999999999998875 99999 9999999999999887653
No 70
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.95 E-value=1.9e-27 Score=217.56 Aligned_cols=163 Identities=16% Similarity=0.188 Sum_probs=124.2
Q ss_pred eeeEEEEECC--cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eEEEE
Q 017797 97 IVGLTCRVGR--AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----------------RVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~--~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-----------------~i~~i 157 (365)
+++++++|+. ..+ ++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.++
T Consensus 3 ~~~l~~~~~~~~~~i--l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 3 IRNLTKTYKKGTKPA--VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred EEeeEEEeCCCCcee--ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 5689999976 445 99999999999999999999999999999999999887431 23444
Q ss_pred cCCCcccCCC-------------CCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCC
Q 017797 158 DTSNEIGGDG-------------DIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (365)
Q Consensus 158 ~~~~ei~~~~-------------~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp 209 (365)
.+...+.... ..+... +. . ......+|+||+||+++++|++.+|++||+|||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 160 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4332221100 011000 00 0 022345799999999999999999999999999
Q ss_pred CcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 210 GTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 210 ~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
++++|.. .+.++.+ +.|||+++|+.+.+..+||+++ ++++|+++..|+++++
T Consensus 161 ~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~--~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 161 TSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIA--IMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEE--EEECCEEEecCCHHHc
Confidence 9999953 3444444 6899999999999988999999 9999999998887653
No 71
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.95 E-value=2.9e-27 Score=221.72 Aligned_cols=166 Identities=17% Similarity=0.182 Sum_probs=128.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------------ 152 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------------ 152 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|.
T Consensus 8 ~~~l~~~~~~~~~--l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 85 (257)
T PRK10619 8 VIDLHKRYGEHEV--LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKN 85 (257)
T ss_pred EeeeEEEECCEEE--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccch
Confidence 6789999986655 99999999999999999999999999999999999877431
Q ss_pred -------eEEEEcCCCcccCCCCCchh------------------hhh-h-----------hhhccCCCcchhHHHHHHH
Q 017797 153 -------RVVIVDTSNEIGGDGDIPHS------------------AIG-T-----------ARRMQVPEPSLQHKVMIEA 195 (365)
Q Consensus 153 -------~i~~i~~~~ei~~~~~~~~~------------------~~~-~-----------~~~~~~~S~g~~~r~~la~ 195 (365)
++.|+++...+.....+.++ ... . .+....+|+|++||+++++
T Consensus 86 ~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~lar 165 (257)
T PRK10619 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIAR 165 (257)
T ss_pred HHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 23333332221110000000 000 0 0223457999999999999
Q ss_pred HHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 196 VENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 196 al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|++.+|++||+|||++++|. +.+.+++++|.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 166 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 241 (257)
T PRK10619 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI--FLHQGKIEEEGAPEQLFG 241 (257)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEECCEEEEeCCHHHhhh
Confidence 99999999999999999995 3455566679999999999999999999999 999999999999888754
No 72
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.1e-27 Score=220.44 Aligned_cols=166 Identities=13% Similarity=0.122 Sum_probs=128.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------CeEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------------~~i~~i 157 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| ..+.++
T Consensus 6 ~~~l~~~~~~~~~--l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 83 (241)
T PRK10895 6 AKNLAKAYKGRRV--VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83 (241)
T ss_pred EeCcEEEeCCEEE--EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEe
Confidence 6789999986555 9999999999999999999999999999999999987643 124444
Q ss_pred cCCCcccCCC--------------CCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcC
Q 017797 158 DTSNEIGGDG--------------DIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (365)
Q Consensus 158 ~~~~ei~~~~--------------~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDE 208 (365)
.+...+.... ...... .. . ......+|+|++||++++++++.+|++|++||
T Consensus 84 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (241)
T PRK10895 84 PQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE 163 (241)
T ss_pred ccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4432221100 000000 00 0 02234579999999999999999999999999
Q ss_pred CCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 209 IGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 209 p~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||+++|. +.+..+.++|.|||+++|+.+.+..+||+++ ++++|+++..|+++++..
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 164 PFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAY--IVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEE--EEeCCeEEeeCCHHHHhc
Confidence 9999995 3445556679999999999998989999999 999999999999888754
No 73
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.1e-27 Score=226.54 Aligned_cols=169 Identities=17% Similarity=0.165 Sum_probs=129.8
Q ss_pred eeeEEEEECCcc---cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------------
Q 017797 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~---~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~---------------------- 151 (365)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|++.|+.|
T Consensus 5 ~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (290)
T PRK13634 5 FQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLR 84 (290)
T ss_pred EEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH
Confidence 679999997421 1249999999999999999999999999999999999988733
Q ss_pred CeEEEEcCCCc--ccCC------------CCCchhh----h-------hh-----hhhccCCCcchhHHHHHHHHHhhCC
Q 017797 152 KRVVIVDTSNE--IGGD------------GDIPHSA----I-------GT-----ARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 152 ~~i~~i~~~~e--i~~~------------~~~~~~~----~-------~~-----~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
.+++|+++... +... ..++... + +. .+....+|+||+||++||+||+++|
T Consensus 85 ~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P 164 (290)
T PRK13634 85 KKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEP 164 (290)
T ss_pred hhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 12455554321 1100 0011100 0 00 0234557999999999999999999
Q ss_pred CEEEEcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 202 EVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 202 ~vlilDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
++||+||||+++|. +.+.++.++ |.|||++||+++++..+||+++ ++++|+++..|++++++..
T Consensus 165 ~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~--~l~~G~i~~~g~~~~~~~~ 236 (290)
T PRK13634 165 EVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIV--VMHKGTVFLQGTPREIFAD 236 (290)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHhcC
Confidence 99999999999995 345555554 9999999999999999999999 9999999999999988653
No 74
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.94 E-value=2.3e-27 Score=222.46 Aligned_cols=162 Identities=15% Similarity=0.151 Sum_probs=125.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------eEEEEcCCCcc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEI 163 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------------~i~~i~~~~ei 163 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.++++...+
T Consensus 15 i~~l~~~~~~~~i--l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l 92 (257)
T PRK11247 15 LNAVSKRYGERTV--LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARL 92 (257)
T ss_pred EEEEEEEECCcce--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccC
Confidence 6799999987655 99999999999999999999999999999999999887431 24455544332
Q ss_pred cCCCC--------Cc---hhhhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH-----
Q 017797 164 GGDGD--------IP---HSAIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH----- 216 (365)
Q Consensus 164 ~~~~~--------~~---~~~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~----- 216 (365)
..... .. ...+. . .+....+|+||+||++++++++.+|++||+||||+++|..
T Consensus 93 ~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l 172 (257)
T PRK11247 93 LPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM 172 (257)
T ss_pred CCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 21000 00 00000 0 1234567999999999999999999999999999999953
Q ss_pred --HHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHH
Q 017797 217 --ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEE 262 (365)
Q Consensus 217 --~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~ 262 (365)
.+.++.+ .|.|||++||+.+++..+||+++ ++++|+++..++.+
T Consensus 173 ~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~--~l~~G~i~~~~~~~ 219 (257)
T PRK11247 173 QDLIESLWQQHGFTVLLVTHDVSEAVAMADRVL--LIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEeecccc
Confidence 3445433 58999999999999889999999 99999999877654
No 75
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.5e-27 Score=224.25 Aligned_cols=164 Identities=15% Similarity=0.180 Sum_probs=127.5
Q ss_pred eeeEEEEEC-CcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEE
Q 017797 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i 157 (365)
+++++++|. ...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| ..+.++
T Consensus 7 ~~~l~~~~~~~~~~--l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 84 (274)
T PRK13647 7 VEDLHFRYKDGTKA--LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLV 84 (274)
T ss_pred EEEEEEEeCCCCee--eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEE
Confidence 679999996 3344 9999999999999999999999999999999999988733 134555
Q ss_pred cCCCc--ccCC------------CCCchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcC
Q 017797 158 DTSNE--IGGD------------GDIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (365)
Q Consensus 158 ~~~~e--i~~~------------~~~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDE 208 (365)
.+... +... ..+.... +.. .+....+|+||+||+++|+||+.+|++|++||
T Consensus 85 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE 164 (274)
T PRK13647 85 FQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDE 164 (274)
T ss_pred ecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 54431 1100 0011000 000 02345679999999999999999999999999
Q ss_pred CCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 209 IGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 209 p~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
||+++|. +.+..++++|.|||++||+++++..+||+++ ++++|++++.|+++.+
T Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 165 PMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVI--VLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHh
Confidence 9999995 4555666679999999999999988999999 9999999999998653
No 76
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.94 E-value=1.4e-27 Score=217.96 Aligned_cols=157 Identities=16% Similarity=0.201 Sum_probs=116.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------------eEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------------RVV 155 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~---------------------~i~ 155 (365)
+++++++|+......++++++.+++|++++|+||||||||||+++|+|+++|+.|. .+.
T Consensus 4 ~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 83 (216)
T TIGR00960 4 FEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIG 83 (216)
T ss_pred EEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhce
Confidence 67899999642112399999999999999999999999999999999999876321 233
Q ss_pred EEcCCCcccCCCC-------------Cchh----hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 156 IVDTSNEIGGDGD-------------IPHS----AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 156 ~i~~~~ei~~~~~-------------~~~~----~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
++.+...+..... .... .+.. .+....+|+||+||+++|+|++.+|++|++|
T Consensus 84 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 163 (216)
T TIGR00960 84 MVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLAD 163 (216)
T ss_pred EEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3333322211000 0000 0000 0233457999999999999999999999999
Q ss_pred CCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEE
Q 017797 208 EIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 255 (365)
Q Consensus 208 Ep~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~i 255 (365)
|||+++|. +.+.++.++|.|||++||+.+++..+||+++ ++++|++
T Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~--~l~~G~i 216 (216)
T TIGR00960 164 EPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTL--TLSRGRL 216 (216)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEeCCcC
Confidence 99999995 3455555668999999999999988999998 8877753
No 77
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.2e-27 Score=225.09 Aligned_cols=168 Identities=16% Similarity=0.152 Sum_probs=129.8
Q ss_pred eeeEEEEECCccc---CcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------------
Q 017797 97 IVGLTCRVGRAVS---GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------- 152 (365)
Q Consensus 97 i~~l~~r~~~~~~---~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~--------------------- 152 (365)
+++++++|+.... ..++++++.+.+|++++|+||||||||||+++|+|++.|+.|.
T Consensus 4 ~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 83 (288)
T PRK13643 4 FEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVR 83 (288)
T ss_pred EEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHH
Confidence 6789999974321 2499999999999999999999999999999999999887431
Q ss_pred -eEEEEcCCCc--ccCC------------CCCchhhh-----------hh-----hhhccCCCcchhHHHHHHHHHhhCC
Q 017797 153 -RVVIVDTSNE--IGGD------------GDIPHSAI-----------GT-----ARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 153 -~i~~i~~~~e--i~~~------------~~~~~~~~-----------~~-----~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
.++++.+..+ +... ..++.... +. .+....+|+||+||+++|++|+++|
T Consensus 84 ~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p 163 (288)
T PRK13643 84 KKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEP 163 (288)
T ss_pred hhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCC
Confidence 2445554331 1100 00111100 00 0223457999999999999999999
Q ss_pred CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 202 EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 202 ~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++||+||||+++|+ +.+..+.+.|.|||++||+++++..+||+++ ++++|+++..|++++++.
T Consensus 164 ~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~--~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 164 EVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVY--LLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEECCHHHHHc
Confidence 99999999999995 3445555679999999999999988999999 999999999999999875
No 78
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=1.8e-27 Score=216.25 Aligned_cols=155 Identities=17% Similarity=0.215 Sum_probs=116.3
Q ss_pred eeeEEEEECCcc--cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------------C
Q 017797 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------K 152 (365)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------------~ 152 (365)
++++++.|.... ..+++++++.+++|++++|+||+||||||||++|.++..|+.+ .
T Consensus 4 ~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~ 83 (226)
T COG1136 4 LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRK 83 (226)
T ss_pred EeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHH
Confidence 568888886532 2459999999999999999999999999999999999999732 2
Q ss_pred eEEEEcCCCcccCC-------------CCCchh----h-------hhhh-----hhccCCCcchhHHHHHHHHHhhCCCE
Q 017797 153 RVVIVDTSNEIGGD-------------GDIPHS----A-------IGTA-----RRMQVPEPSLQHKVMIEAVENHMPEV 203 (365)
Q Consensus 153 ~i~~i~~~~ei~~~-------------~~~~~~----~-------~~~~-----~~~~~~S~g~~~r~~la~al~~~P~v 203 (365)
+|+++.|...+... ...+.. . ++.. .....+|||||||+++||||+.+|++
T Consensus 84 ~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~i 163 (226)
T COG1136 84 KIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKI 163 (226)
T ss_pred hEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCe
Confidence 34444443322111 011110 0 0110 23557899999999999999999999
Q ss_pred EEEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcE
Q 017797 204 IIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD 254 (365)
Q Consensus 204 lilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~ 254 (365)
|+.||||..+|. +++.++.+ .|.|||++||+...+. .||+++ .+.+|+
T Consensus 164 ilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i--~l~dG~ 219 (226)
T COG1136 164 ILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVI--ELKDGK 219 (226)
T ss_pred EEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEE--EEeCCe
Confidence 999999999984 45666654 4999999999998664 899998 777777
No 79
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.5e-27 Score=215.41 Aligned_cols=158 Identities=23% Similarity=0.277 Sum_probs=121.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------CeEEEEcCCCc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--------------KRVVIVDTSNE 162 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~--------------~~i~~i~~~~e 162 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.++++...
T Consensus 3 ~~~l~~~~~~~~~--l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 3 VENVTKRFGRVTA--LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred EEEEEEEECCEEE--EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 5689999986555 9999999999999999999999999999999999987643 12445544332
Q ss_pred ccCCC-------------CCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHH
Q 017797 163 IGGDG-------------DIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (365)
Q Consensus 163 i~~~~-------------~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d 214 (365)
+.... ..+... +. . .+....+|+||+||++++++++.+|++|++|||++++|
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD 160 (210)
T cd03269 81 LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160 (210)
T ss_pred CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 21100 000000 00 0 02234579999999999999999999999999999999
Q ss_pred H-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEe
Q 017797 215 A-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (365)
Q Consensus 215 ~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~ 258 (365)
. +.++.+.++|.|||+++|+.+++..+||+++ ++++|+++..
T Consensus 161 ~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~~g~i~~~ 209 (210)
T cd03269 161 PVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVL--LLNKGRAVLY 209 (210)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEE--EEeCCEEEec
Confidence 5 3455556678999999999999988999999 8999998765
No 80
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.94 E-value=3.8e-27 Score=221.11 Aligned_cols=166 Identities=22% Similarity=0.303 Sum_probs=128.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.++.
T Consensus 5 ~~~l~~~~~~~~i--l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (258)
T PRK13548 5 ARNLSVRLGGRTL--LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLP 82 (258)
T ss_pred EEeEEEEeCCeee--eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEc
Confidence 6789999987655 9999999999999999999999999999999999987643 1244444
Q ss_pred CCCcccCCCCC---------ch--------hhhhh-----------hhhccCCCcchhHHHHHHHHHh------hCCCEE
Q 017797 159 TSNEIGGDGDI---------PH--------SAIGT-----------ARRMQVPEPSLQHKVMIEAVEN------HMPEVI 204 (365)
Q Consensus 159 ~~~ei~~~~~~---------~~--------~~~~~-----------~~~~~~~S~g~~~r~~la~al~------~~P~vl 204 (365)
+...+.....+ .. ..+.. ......+|+|++||+++++|++ .+|++|
T Consensus 83 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~ll 162 (258)
T PRK13548 83 QHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWL 162 (258)
T ss_pred cCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEE
Confidence 43322110000 00 00000 0234457999999999999999 499999
Q ss_pred EEcCCCcHHHH-------HHHHHHH-HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 205 IVDEIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 205 ilDEp~~~~d~-------~~i~~~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++||||+++|. +.+.++. +.|.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 163 LLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIV--LLHQGRLVADGTPAEVLT 230 (258)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEE--EEECCEEEeeCCHHHHhC
Confidence 99999999995 3455555 568999999999999989999999 999999999998887654
No 81
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.94 E-value=4e-27 Score=236.13 Aligned_cols=174 Identities=19% Similarity=0.217 Sum_probs=136.9
Q ss_pred eeeEEEEECC---------cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc-----
Q 017797 97 IVGLTCRVGR---------AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE----- 162 (365)
Q Consensus 97 i~~l~~r~~~---------~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~e----- 162 (365)
+++++++|.. ....+++++++.+.+|++++|+|++|||||||.|+|+|++.|+ ++.|.+......
T Consensus 283 V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~-~G~i~~~g~~~~~~~~~ 361 (539)
T COG1123 283 VRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS-SGSIIFDGQDLDLTGGE 361 (539)
T ss_pred eeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEEeCcccccccch
Confidence 7789999974 1235699999999999999999999999999999999999996 556665543200
Q ss_pred ---------ccC----CCCCchhhhh-----------------------------------hhhhccCCCcchhHHHHHH
Q 017797 163 ---------IGG----DGDIPHSAIG-----------------------------------TARRMQVPEPSLQHKVMIE 194 (365)
Q Consensus 163 ---------i~~----~~~~~~~~~~-----------------------------------~~~~~~~~S~g~~~r~~la 194 (365)
+.+ ....|+..++ ..++...+||||+||+++|
T Consensus 362 ~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIA 441 (539)
T COG1123 362 LRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIA 441 (539)
T ss_pred hhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHH
Confidence 000 0001111100 0134456799999999999
Q ss_pred HHHhhCCCEEEEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 195 AVENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 195 ~al~~~P~vlilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+||+.+|++||+|||++.+|+ ++++.+.+ .|.|.+++|||+.++..+||+++ +|..|++|..|+.+.++.
T Consensus 442 RALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~--vm~~G~iVE~G~~~~v~~ 519 (539)
T COG1123 442 RALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVA--VMYDGRIVEEGPTEKVFE 519 (539)
T ss_pred HHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEE--EEECCeEEEeCCHHHHhc
Confidence 999999999999999999994 56666655 49999999999999999999999 999999999999999998
Q ss_pred hchHHHH
Q 017797 267 RCQKSIL 273 (365)
Q Consensus 267 ~~~~~~~ 273 (365)
.+.....
T Consensus 520 ~p~h~Yt 526 (539)
T COG1123 520 NPQHPYT 526 (539)
T ss_pred CCCChHH
Confidence 7554433
No 82
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.94 E-value=3.1e-27 Score=219.36 Aligned_cols=164 Identities=16% Similarity=0.189 Sum_probs=125.7
Q ss_pred eeeEEEEEC-CcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------------eE
Q 017797 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------------RV 154 (365)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~---------------------~i 154 (365)
+++++++|+ ...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+
T Consensus 4 ~~~l~~~~~~~~~i--l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 4 VENLSKVYPNGKQA--LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred EEeeeeecCCCcce--eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 568999997 5445 99999999999999999999999999999999999876331 13
Q ss_pred EEEcCCCcccCCCC---------C-------------chh---hhhh-----------hhhccCCCcchhHHHHHHHHHh
Q 017797 155 VIVDTSNEIGGDGD---------I-------------PHS---AIGT-----------ARRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 155 ~~i~~~~ei~~~~~---------~-------------~~~---~~~~-----------~~~~~~~S~g~~~r~~la~al~ 198 (365)
.++++...+..... . +.. .+.. .+....+|+||+||+++|+|++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 161 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALA 161 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 44443322111000 0 000 0000 0233457999999999999999
Q ss_pred hCCCEEEEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 199 HMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 199 ~~P~vlilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
.+|++|++||||+++|. +.+.++.+ .|.|||++||+.+++..+||+++ ++++|+++..|+++++
T Consensus 162 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 162 QQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIV--GLKAGEIVFDGAPSEL 233 (243)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE--EEECCEEEecCCHHHh
Confidence 99999999999999995 34555544 48999999999999988999999 9999999999988875
No 83
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.94 E-value=4.7e-27 Score=219.55 Aligned_cols=167 Identities=16% Similarity=0.202 Sum_probs=127.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------------ 152 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------------ 152 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|++.|+.|.
T Consensus 3 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 3 FSDVTKRFGILTV--LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred EEEEEEEeCCeeE--EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 6789999986555 99999999999999999999999999999999999876331
Q ss_pred -------eEEEEcCCCcccCCCC--------------Cchhh----hh-hh----------hhccCCCcchhHHHHHHHH
Q 017797 153 -------RVVIVDTSNEIGGDGD--------------IPHSA----IG-TA----------RRMQVPEPSLQHKVMIEAV 196 (365)
Q Consensus 153 -------~i~~i~~~~ei~~~~~--------------~~~~~----~~-~~----------~~~~~~S~g~~~r~~la~a 196 (365)
.+.++.+...+..... ..... +. .. +....+|+|++||+++++|
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 160 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARA 160 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHH
Confidence 1333333221111000 00000 00 00 2234579999999999999
Q ss_pred HhhCCCEEEEcCCCcHHHHH-------HHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 197 ENHMPEVIIVDEIGTEAEAH-------ACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 197 l~~~P~vlilDEp~~~~d~~-------~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
++.+|++||+|||++++|.. .+.++.++ |.|+|++||+.+++..+||+++ ++++|+++..|+++++...
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 237 (252)
T TIGR03005 161 LAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVC--FFDKGRIVEQGKPDEIFRQ 237 (252)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE--EEECCEEEEeCCHHHHhcC
Confidence 99999999999999999953 45555554 8999999999999988999999 9999999999998887654
No 84
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.3e-27 Score=209.55 Aligned_cols=150 Identities=17% Similarity=0.289 Sum_probs=113.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-----cccC-CCCCc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-----EIGG-DGDIP 170 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~-----ei~~-~~~~~ 170 (365)
+++++++|....+ ++++++.+.+|++++|+||||||||||+++|+|+++|.. +.|.+-.... .+.. ...++
T Consensus 3 ~~~l~~~~~~~~~--l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 3 VRNLSKRYGKKTA--LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS-GEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred EEEEEEEECCeee--eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-eEEEECCEEcccchHhhhccEEEEe
Confidence 5689999976544 999999999999999999999999999999999998863 3443221110 0000 00111
Q ss_pred hh-------hhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcc
Q 017797 171 HS-------AIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEW 236 (365)
Q Consensus 171 ~~-------~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~ 236 (365)
+. .+. ..+ .+|+|++||+++++|++.+|++|++|||++++|. +.+.++.++|.|+|+++|+.+
T Consensus 80 q~~~~~~~~tv~--~~~-~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~ 156 (173)
T cd03230 80 EEPSLYENLTVR--ENL-KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred cCCccccCCcHH--HHh-hcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 11 110 111 1899999999999999999999999999999995 456666667899999999999
Q ss_pred hhHHhhhHHHHHHHcCcE
Q 017797 237 LENIIKNPILSDLIGGVD 254 (365)
Q Consensus 237 ~~~~~~d~i~~~ll~~g~ 254 (365)
++..+||+++ ++++|+
T Consensus 157 ~~~~~~d~i~--~l~~g~ 172 (173)
T cd03230 157 EAERLCDRVA--ILNNGR 172 (173)
T ss_pred HHHHhCCEEE--EEeCCC
Confidence 9988999998 777765
No 85
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.94 E-value=2.1e-27 Score=217.07 Aligned_cols=153 Identities=17% Similarity=0.205 Sum_probs=114.9
Q ss_pred eeeEEEEECC----cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC--------------------
Q 017797 97 IVGLTCRVGR----AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------- 152 (365)
Q Consensus 97 i~~l~~r~~~----~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------------------- 152 (365)
+++++++|+. ..+ ++++++.+++|++++|+||||||||||+++|+|+++|+.|.
T Consensus 3 ~~~l~~~~~~~~~~~~i--l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 3 LKNLSKTYGGGGEKVQA--LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred EeeeEEEecCCCcceeE--EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 5789999976 344 99999999999999999999999999999999999876321
Q ss_pred --eEEEEcCCCcccCCCC-------------Cch----hhhh-h----------hhhccCCCcchhHHHHHHHHHhhCCC
Q 017797 153 --RVVIVDTSNEIGGDGD-------------IPH----SAIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPE 202 (365)
Q Consensus 153 --~i~~i~~~~ei~~~~~-------------~~~----~~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~ 202 (365)
.+.++++...+..... ... ..+. . .+....+|+||+||+++|+|++.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence 2344433322111000 000 0000 0 02234579999999999999999999
Q ss_pred EEEEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcE
Q 017797 203 VIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD 254 (365)
Q Consensus 203 vlilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~ 254 (365)
+||+|||++++|+ +.+.++.+ .|.|||++||+.+++. +||+++ ++++|+
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~--~l~~G~ 217 (218)
T cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRII--ELRDGK 217 (218)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEE--EeeCCc
Confidence 9999999999995 34555555 5899999999999887 899998 888775
No 86
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.2e-27 Score=218.02 Aligned_cols=166 Identities=17% Similarity=0.208 Sum_probs=126.9
Q ss_pred eeeEEEEECC-cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------eEEEE
Q 017797 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------~i~~i 157 (365)
+++++++|+. ..+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.|+
T Consensus 3 ~~~l~~~~~~~~~~--l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 3 FENVTKRYGGGKKA--VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred EEEEEEEeCCcceE--eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 5689999986 445 99999999999999999999999999999999999877331 23444
Q ss_pred cCCCcccCCC-------------CCchh----hh-------hh------hhhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 158 DTSNEIGGDG-------------DIPHS----AI-------GT------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 158 ~~~~ei~~~~-------------~~~~~----~~-------~~------~~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
++...+.... ..... .+ +. .+....+|+||+||+++|+|+..+|++|++|
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 160 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD 160 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 4332221100 00000 00 00 0123457999999999999999999999999
Q ss_pred CCCcHHHHH-------HHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 208 EIGTEAEAH-------ACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 208 Ep~~~~d~~-------~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||++++|.. .+.+++++ |.+||++||+.+.+..+||+++ ++++|+++..|+++++..
T Consensus 161 EPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 161 EPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIA--IMKNGEIVQVGTPDEILR 225 (242)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEecCHHHHHc
Confidence 999999953 45555554 8999999999998889999999 999999999998877654
No 87
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=1.8e-27 Score=205.70 Aligned_cols=170 Identities=18% Similarity=0.186 Sum_probs=136.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccC-----------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG----------- 165 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~----------- 165 (365)
+.++.|||+...+ ++++++...+|+++.|+|.+||||||+||||.=+.+|+. ++|.+-.+...+..
T Consensus 9 v~dlHK~~G~~eV--LKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~-G~I~v~geei~~k~~~~G~l~~ad~ 85 (256)
T COG4598 9 VEDLHKRYGEHEV--LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA-GSIRVNGEEIRLKRDKDGQLKPADK 85 (256)
T ss_pred hhHHHhhcccchh--hcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCC-ceEEECCeEEEeeeCCCCCeeeCCH
Confidence 5689999999988 999999999999999999999999999999999999984 44443322111100
Q ss_pred ----------------CCCCchhhh------------------------------hhh----hhccCCCcchhHHHHHHH
Q 017797 166 ----------------DGDIPHSAI------------------------------GTA----RRMQVPEPSLQHKVMIEA 195 (365)
Q Consensus 166 ----------------~~~~~~~~~------------------------------~~~----~~~~~~S~g~~~r~~la~ 195 (365)
...+++..+ +.. .....+|+|++||++||+
T Consensus 86 ~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIAR 165 (256)
T COG4598 86 RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIAR 165 (256)
T ss_pred HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHH
Confidence 001111100 000 122346999999999999
Q ss_pred HHhhCCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhc
Q 017797 196 VENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (365)
Q Consensus 196 al~~~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~ 268 (365)
||++.|+++++||||+.+|++ .++.+++.|.|.+.+||.|.++..++++++ ++++|.+-..|+|++++.+|
T Consensus 166 aLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~--fLh~G~iEE~G~P~qvf~nP 243 (256)
T COG4598 166 ALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVI--FLHQGKIEEEGPPEQVFGNP 243 (256)
T ss_pred HHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheE--EeecceecccCChHHHhcCC
Confidence 999999999999999999974 467789999999999999999999999999 99999999999999999876
Q ss_pred hHH
Q 017797 269 QKS 271 (365)
Q Consensus 269 ~~~ 271 (365)
...
T Consensus 244 ~S~ 246 (256)
T COG4598 244 QSP 246 (256)
T ss_pred CCH
Confidence 543
No 88
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.94 E-value=4.4e-27 Score=215.83 Aligned_cols=163 Identities=17% Similarity=0.204 Sum_probs=126.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------CeEEEEcCCCc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--------------KRVVIVDTSNE 162 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~--------------~~i~~i~~~~e 162 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.++++...
T Consensus 3 l~~v~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 3 TKNLSKRFGKQTA--VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred EEeEEEEECCEEE--EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC
Confidence 5789999986655 9999999999999999999999999999999999987743 12344444332
Q ss_pred ccCCCCC-------------chhhhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH---
Q 017797 163 IGGDGDI-------------PHSAIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA--- 215 (365)
Q Consensus 163 i~~~~~~-------------~~~~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~--- 215 (365)
+.....+ ....+. . ......+|+|++||+++++|++.+|++|++|||++++|.
T Consensus 81 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~ 160 (223)
T TIGR03740 81 LYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGI 160 (223)
T ss_pred ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHH
Confidence 2111000 000000 0 022345799999999999999999999999999999995
Q ss_pred ----HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHH
Q 017797 216 ----HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 263 (365)
Q Consensus 216 ----~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~ 263 (365)
+.+.++.++|.+||++||+.+++..+||+++ ++.+|+++..|++.+
T Consensus 161 ~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 161 QELRELIRSFPEQGITVILSSHILSEVQQLADHIG--IISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEE--EEeCCEEEEecChhh
Confidence 3455555678999999999999989999999 999999999988753
No 89
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.4e-27 Score=232.66 Aligned_cols=156 Identities=13% Similarity=0.151 Sum_probs=121.2
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------------CeEEEEcCCCcccCCC-
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------KRVVIVDTSNEIGGDG- 167 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------------~~i~~i~~~~ei~~~~- 167 (365)
.++++++.+++|++++|+||||||||||+++|+|++.|+.| .++.|+.+...+....
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 38999999999999999999999999999999999988743 1344554433221110
Q ss_pred ------------CCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-----
Q 017797 168 ------------DIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA----- 215 (365)
Q Consensus 168 ------------~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~----- 215 (365)
.++... +. . .+....+|+||+||+++|+||+.+|++||+|||++++|+
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~ 202 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 011000 00 0 123455799999999999999999999999999999995
Q ss_pred --HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhc
Q 017797 216 --HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (365)
Q Consensus 216 --~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~ 268 (365)
+.+.++.+ .|.|||++||+.+++..+||+++ ++++|+++..|+++++...+
T Consensus 203 l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~--vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 203 MQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIA--IMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEE--EEECCEEEecCCHHHHHhCc
Confidence 34555544 58999999999999999999999 99999999999999987654
No 90
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.94 E-value=5e-27 Score=227.66 Aligned_cols=170 Identities=18% Similarity=0.183 Sum_probs=130.3
Q ss_pred eeeEEEEECCc-----------ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------
Q 017797 97 IVGLTCRVGRA-----------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~-----------~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------- 151 (365)
+++|+++|... ...+++++++.+.+|++++|+|+||||||||+++|+|++.|+.|
T Consensus 11 v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~ 90 (331)
T PRK15079 11 VADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKD 90 (331)
T ss_pred EeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCH
Confidence 67888888631 12348999999999999999999999999999999999987632
Q ss_pred -------CeEEEEcCCCc--ccCCC---------------CCchhhh-----------hh-----hhhccCCCcchhHHH
Q 017797 152 -------KRVVIVDTSNE--IGGDG---------------DIPHSAI-----------GT-----ARRMQVPEPSLQHKV 191 (365)
Q Consensus 152 -------~~i~~i~~~~e--i~~~~---------------~~~~~~~-----------~~-----~~~~~~~S~g~~~r~ 191 (365)
+++.++.+... +.... .+..... +. .+....+|+||+||+
T Consensus 91 ~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv 170 (331)
T PRK15079 91 DEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRI 170 (331)
T ss_pred HHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHH
Confidence 23455544421 11000 0111000 00 022345799999999
Q ss_pred HHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHH
Q 017797 192 MIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 263 (365)
Q Consensus 192 ~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~ 263 (365)
+||+|++.+|++||+||||+++|. +++.++.++ |.|+|++||+++.+..+||+++ +|.+|++++.|++++
T Consensus 171 ~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~--vl~~G~ive~g~~~~ 248 (331)
T PRK15079 171 GIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVL--VMYLGHAVELGTYDE 248 (331)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHH
Confidence 999999999999999999999995 455666554 9999999999999999999999 999999999999999
Q ss_pred HHHhc
Q 017797 264 RARRC 268 (365)
Q Consensus 264 ~~~~~ 268 (365)
++..+
T Consensus 249 i~~~~ 253 (331)
T PRK15079 249 VYHNP 253 (331)
T ss_pred HHcCC
Confidence 88654
No 91
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.94 E-value=2.8e-27 Score=217.55 Aligned_cols=162 Identities=15% Similarity=0.187 Sum_probs=125.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcc-----ccCCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL-----SDEFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll-----~~~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++ +|..|
T Consensus 3 ~~~l~~~~~~~~~--l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 3 LRDLNVYYGDKHA--LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred EEEEEEEcCCcee--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 6789999987655 99999999999999999999999999999999999 66532
Q ss_pred CeEEEEcCCCcccCC------------CCC-ch----hhhh-------h----hhh--ccCCCcchhHHHHHHHHHhhCC
Q 017797 152 KRVVIVDTSNEIGGD------------GDI-PH----SAIG-------T----ARR--MQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~-~~----~~~~-------~----~~~--~~~~S~g~~~r~~la~al~~~P 201 (365)
.++.++++...+... ... .. ..+. . .+. ...+|+||+||+++++|++.+|
T Consensus 81 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (227)
T cd03260 81 RRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEP 160 (227)
T ss_pred hhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCC
Confidence 124455444322110 000 00 0000 0 022 2678999999999999999999
Q ss_pred CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHH
Q 017797 202 EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 263 (365)
Q Consensus 202 ~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~ 263 (365)
++|++||||+++|. +.+.++.++ .|||++||+.+++..+||+++ ++++|+++..|++++
T Consensus 161 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~ 226 (227)
T cd03260 161 EVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTA--FLLNGRLVEFGPTEQ 226 (227)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEE--EEeCCEEEEecCccc
Confidence 99999999999995 345555555 899999999999989999999 999999998887654
No 92
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.6e-27 Score=227.00 Aligned_cols=170 Identities=15% Similarity=0.140 Sum_probs=130.4
Q ss_pred eeeEEEEECCcc--cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc----CCC-------------------
Q 017797 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD----EFQ------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~----~~~------------------- 151 (365)
++++++.|+... ..+++++++.+.+|++++|+||||||||||+++|+|++.+ +.|
T Consensus 6 v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~ 85 (326)
T PRK11022 6 VDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRN 85 (326)
T ss_pred EeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHH
Confidence 678999997632 1349999999999999999999999999999999999963 211
Q ss_pred ---CeEEEEcCCCc--ccCC--------------CCCchhh----hh-hh-------------hhccCCCcchhHHHHHH
Q 017797 152 ---KRVVIVDTSNE--IGGD--------------GDIPHSA----IG-TA-------------RRMQVPEPSLQHKVMIE 194 (365)
Q Consensus 152 ---~~i~~i~~~~e--i~~~--------------~~~~~~~----~~-~~-------------~~~~~~S~g~~~r~~la 194 (365)
+.+.++++... +... ....... +. .. +....+|+||+||+++|
T Consensus 86 ~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iA 165 (326)
T PRK11022 86 LVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIA 165 (326)
T ss_pred HhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHH
Confidence 13555555431 1100 0000000 00 00 12345799999999999
Q ss_pred HHHhhCCCEEEEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 195 AVENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 195 ~al~~~P~vlilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+|++.+|++||+||||+++|. +.++++.+ .|.|+|++||+++.+..+||+++ +|.+|++++.|++++++.
T Consensus 166 rAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~--vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 166 MAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKII--VMYAGQVVETGKAHDIFR 243 (326)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHhh
Confidence 999999999999999999995 45666655 59999999999999999999999 999999999999999886
Q ss_pred hc
Q 017797 267 RC 268 (365)
Q Consensus 267 ~~ 268 (365)
.+
T Consensus 244 ~p 245 (326)
T PRK11022 244 AP 245 (326)
T ss_pred CC
Confidence 54
No 93
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.8e-27 Score=226.46 Aligned_cols=170 Identities=16% Similarity=0.165 Sum_probs=130.1
Q ss_pred eeeEEEEECCc--------ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------
Q 017797 97 IVGLTCRVGRA--------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~--------~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------- 151 (365)
+++|+++|... ...+++++++.+.+|++++|+|+||||||||+++|+|++.|+.|
T Consensus 8 v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~ 87 (327)
T PRK11308 8 AIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQ 87 (327)
T ss_pred EeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHH
Confidence 67899988631 12359999999999999999999999999999999999987632
Q ss_pred ----CeEEEEcCCCc--ccCC--------------CCCchhh----hh------------hhhhccCCCcchhHHHHHHH
Q 017797 152 ----KRVVIVDTSNE--IGGD--------------GDIPHSA----IG------------TARRMQVPEPSLQHKVMIEA 195 (365)
Q Consensus 152 ----~~i~~i~~~~e--i~~~--------------~~~~~~~----~~------------~~~~~~~~S~g~~~r~~la~ 195 (365)
+++.++++... +... ....... +. ..+....+|+||+||++||+
T Consensus 88 ~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iAr 167 (327)
T PRK11308 88 KLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIAR 167 (327)
T ss_pred HHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHH
Confidence 23455544321 1000 0000000 00 01223467999999999999
Q ss_pred HHhhCCCEEEEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 196 VENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 196 al~~~P~vlilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
||+.+|++||+||||+++|. +++.++.+ .|.|+|++||+.+.+..+||+++ +|+.|++++.|++++++..
T Consensus 168 AL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~--vm~~G~ive~g~~~~~~~~ 245 (327)
T PRK11308 168 ALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVM--VMYLGRCVEKGTKEQIFNN 245 (327)
T ss_pred HHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHhcC
Confidence 99999999999999999995 34556655 49999999999999999999999 9999999999999998875
Q ss_pred c
Q 017797 268 C 268 (365)
Q Consensus 268 ~ 268 (365)
+
T Consensus 246 p 246 (327)
T PRK11308 246 P 246 (327)
T ss_pred C
Confidence 3
No 94
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.94 E-value=1.7e-27 Score=269.47 Aligned_cols=169 Identities=16% Similarity=0.120 Sum_probs=133.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------CeEEEEcC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----------------KRVVIVDT 159 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----------------~~i~~i~~ 159 (365)
+++++|+|++....+++++++.+++|++++|+||||||||||+|+|+|++.|+.| ++++++++
T Consensus 1940 v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ 2019 (2272)
T TIGR01257 1940 LNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQ 2019 (2272)
T ss_pred EEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEec
Confidence 7799999986322249999999999999999999999999999999999988743 12455554
Q ss_pred CCcccCC-------------CCCchhhhh----h-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc
Q 017797 160 SNEIGGD-------------GDIPHSAIG----T-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 160 ~~ei~~~-------------~~~~~~~~~----~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~ 211 (365)
...+... .+++..... . .++...+|+|||||+++|+|++.+|++|++|||++
T Consensus 2020 ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTs 2099 (2272)
T TIGR01257 2020 FDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099 (2272)
T ss_pred cccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 3322110 111111100 0 13345679999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 212 EAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 212 ~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
++|+ +.+.+++++|+|||+|||++++++.+||+++ +|++|+++..|+++++...
T Consensus 2100 GLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~--IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2100 GMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLA--IMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHHH
Confidence 9995 4566666779999999999999999999999 9999999999999987653
No 95
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=7.1e-27 Score=221.54 Aligned_cols=166 Identities=18% Similarity=0.193 Sum_probs=128.1
Q ss_pred eeeEEEEECC-cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------eEEEE
Q 017797 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------~i~~i 157 (365)
+++++++|+. ..+ ++++++.+.+|++++|+||||||||||+++|+|++.|+.|. .+.++
T Consensus 6 ~~~l~~~~~~~~~~--l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 83 (277)
T PRK13652 6 TRDLCYSYSGSKEA--LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLV 83 (277)
T ss_pred EEEEEEEeCCCCce--eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEE
Confidence 6799999963 334 99999999999999999999999999999999999887431 23444
Q ss_pred cCCCc--ccCC------------CCCchhh----h-------h----hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcC
Q 017797 158 DTSNE--IGGD------------GDIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (365)
Q Consensus 158 ~~~~e--i~~~------------~~~~~~~----~-------~----~~~~~~~~S~g~~~r~~la~al~~~P~vlilDE 208 (365)
.+... +... ..+.... + + ..+....+|+||+||+++++|++.+|++||+||
T Consensus 84 ~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDE 163 (277)
T PRK13652 84 FQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE 163 (277)
T ss_pred ecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 33321 1100 0000000 0 0 012345679999999999999999999999999
Q ss_pred CCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 209 IGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 209 p~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||+++|. +.+.++.++ |.|||++||+.+++..+||+++ ++++|+++..|++++++.
T Consensus 164 Pt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~--~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 164 PTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIY--VMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEECCeEEEECCHHHHhc
Confidence 9999995 345555554 8999999999999989999999 999999999999998865
No 96
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.1e-27 Score=229.07 Aligned_cols=165 Identities=14% Similarity=0.130 Sum_probs=126.6
Q ss_pred eEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------------eEEE
Q 017797 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----------------------RVVI 156 (365)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~----------------------~i~~ 156 (365)
+++++|+... . ++++.+++|++++|+|||||||||||++|+|+++|+.|. ++.+
T Consensus 5 ~l~k~~~~~~---~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (352)
T PRK11144 5 NFKQQLGDLC---L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGY 80 (352)
T ss_pred EEEEEeCCEE---E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEE
Confidence 7889997642 3 799999999999999999999999999999999887321 1333
Q ss_pred EcCCCcccCCCCCchh-----------hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHH
Q 017797 157 VDTSNEIGGDGDIPHS-----------AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (365)
Q Consensus 157 i~~~~ei~~~~~~~~~-----------~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d 214 (365)
+++...+.....+.++ .+. . .+....+|+||+||+++|+|++.+|++|++|||++++|
T Consensus 81 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD 160 (352)
T PRK11144 81 VFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160 (352)
T ss_pred EcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 3332221110000000 000 0 13345679999999999999999999999999999999
Q ss_pred H-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 215 A-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 215 ~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
. +.++++.++ |.|+|++||+.+++..+||+++ ++++|+++..|++++++..+.
T Consensus 161 ~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~--~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 161 LPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVV--VLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEE--EEeCCEEEEecCHHHHHhCcc
Confidence 5 345555554 8999999999999999999999 999999999999999988754
No 97
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.2e-27 Score=222.58 Aligned_cols=166 Identities=13% Similarity=0.208 Sum_probs=129.3
Q ss_pred eeeEEEEEC-CcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------------CeEE
Q 017797 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--------------------KRVV 155 (365)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~--------------------~~i~ 155 (365)
+++++++|+ ...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| ..++
T Consensus 8 ~~~l~~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig 85 (283)
T PRK13636 8 VEELNYNYSDGTHA--LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVG 85 (283)
T ss_pred EEeEEEEeCCCCee--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEE
Confidence 679999996 3445 9999999999999999999999999999999999987743 1245
Q ss_pred EEcCCCc--ccCC------------CCCchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 156 IVDTSNE--IGGD------------GDIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 156 ~i~~~~e--i~~~------------~~~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
|+++... +... ..++... +.. .+....+|+||+||+++++||+.+|++||+
T Consensus 86 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLil 165 (283)
T PRK13636 86 MVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVL 165 (283)
T ss_pred EEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 5544331 1000 0111100 000 023455799999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|||++++|. +.+.++.++ |.||++++|+++++..+||+++ ++++|++++.|+++++..
T Consensus 166 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~--~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 166 DEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVF--VMKEGRVILQGNPKEVFA 231 (283)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhc
Confidence 999999995 345555554 8999999999999988999999 999999999999998765
No 98
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.9e-27 Score=218.88 Aligned_cols=166 Identities=16% Similarity=0.219 Sum_probs=129.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------eEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------~i~~i~ 158 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.|. .+.|++
T Consensus 5 ~~~l~~~~~~~~i--l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (255)
T PRK11231 5 TENLTVGYGTKRI--LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLP 82 (255)
T ss_pred EEeEEEEECCEEE--EeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEec
Confidence 6789999987655 99999999999999999999999999999999999876431 244544
Q ss_pred CCCcccCC--------CC-------C---chh---hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD--------GD-------I---PHS---AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~--------~~-------~---~~~---~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+... .. . +.. .+.. ......+|+||+||+++|+|++.+|++||+
T Consensus 83 q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 162 (255)
T PRK11231 83 QHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLL 162 (255)
T ss_pred ccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 43322110 00 0 000 0000 022345799999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|||++++|. +.+.++.++|.|||++||+.+.+..+||+++ ++++|+++..|+++++..
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 163 DEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLV--VLANGHVMAQGTPEEVMT 227 (255)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEE--EEECCeEEEEcCHHHhcC
Confidence 999999995 3455555668999999999999999999999 999999999998887654
No 99
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.94 E-value=6.1e-27 Score=215.19 Aligned_cols=159 Identities=18% Similarity=0.206 Sum_probs=120.7
Q ss_pred eeeEEEEECCc----ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------------
Q 017797 97 IVGLTCRVGRA----VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~----~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~--------------------- 151 (365)
+++++++|+.. .+ ++++++.+++|++++|+||||||||||+++|+|+++|+.|
T Consensus 4 ~~~v~~~~~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 4 VKNLSVSFPTGGGSVKA--LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred EEeeeEeccCCCcceee--ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 67899999754 34 8999999999999999999999999999999999987633
Q ss_pred CeEEEEcCCCc--ccCCCC---------------Cchh---hh--hh-----------hhhccCCCcchhHHHHHHHHHh
Q 017797 152 KRVVIVDTSNE--IGGDGD---------------IPHS---AI--GT-----------ARRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 152 ~~i~~i~~~~e--i~~~~~---------------~~~~---~~--~~-----------~~~~~~~S~g~~~r~~la~al~ 198 (365)
..+.|+.+... +..... .... .. .. ......+|+||+||+++|++++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~ 161 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALA 161 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHh
Confidence 13455544431 110000 0000 00 00 0123447999999999999999
Q ss_pred hCCCEEEEcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEec
Q 017797 199 HMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (365)
Q Consensus 199 ~~P~vlilDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g 259 (365)
.+|++|++||||+++|. +.+.++.++ |.|||++||+.+.+..+||+++ ++++|+++..|
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~~G~i~~~g 228 (228)
T cd03257 162 LNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVA--VMYAGKIVEEG 228 (228)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE--EEeCCEEEecC
Confidence 99999999999999995 345555555 8999999999999988999999 99999987653
No 100
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.6e-27 Score=218.80 Aligned_cols=166 Identities=17% Similarity=0.175 Sum_probs=128.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------eEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------------------~i~~i 157 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.++
T Consensus 8 ~~~l~~~~~~~~~--l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 85 (255)
T PRK11300 8 VSGLMMRFGGLLA--VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRT 85 (255)
T ss_pred EeeEEEEECCEEE--EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEe
Confidence 6799999987655 99999999999999999999999999999999999877431 13444
Q ss_pred cCCCcccCCCCCch--------------------------h------hhh-------h----hhhccCCCcchhHHHHHH
Q 017797 158 DTSNEIGGDGDIPH--------------------------S------AIG-------T----ARRMQVPEPSLQHKVMIE 194 (365)
Q Consensus 158 ~~~~ei~~~~~~~~--------------------------~------~~~-------~----~~~~~~~S~g~~~r~~la 194 (365)
.+...+.....+.+ . ... . .+....+|+||+||+++|
T Consensus 86 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 165 (255)
T PRK11300 86 FQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIA 165 (255)
T ss_pred ccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHH
Confidence 44322211000000 0 000 0 022344799999999999
Q ss_pred HHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 195 AVENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 195 ~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+|+..+|++||+|||++++|. +.+..++++ |.|||+++|+.+++..+||+++ ++++|+++..|+++++..
T Consensus 166 ~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 166 RCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIY--VVNQGTPLANGTPEEIRN 243 (255)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEE--EEECCeEEecCCHHHHhh
Confidence 999999999999999999995 345555554 8999999999999999999999 999999999999888754
No 101
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.94 E-value=6.9e-27 Score=226.67 Aligned_cols=171 Identities=13% Similarity=0.141 Sum_probs=130.9
Q ss_pred eeeEEEEECCc--ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC---CC--------------------
Q 017797 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE---FQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~---~~-------------------- 151 (365)
++++++.|... ...+++++++.+.+|++++|+|+||||||||+++|+|+++|. .|
T Consensus 15 i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~ 94 (330)
T PRK09473 15 VKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKL 94 (330)
T ss_pred EeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHH
Confidence 67899998531 123499999999999999999999999999999999999873 21
Q ss_pred --CeEEEEcCCCc--ccCC--------------CCCchhh----h-------hh-------hhhccCCCcchhHHHHHHH
Q 017797 152 --KRVVIVDTSNE--IGGD--------------GDIPHSA----I-------GT-------ARRMQVPEPSLQHKVMIEA 195 (365)
Q Consensus 152 --~~i~~i~~~~e--i~~~--------------~~~~~~~----~-------~~-------~~~~~~~S~g~~~r~~la~ 195 (365)
++|.++++... +... ....... + +. .+....+|+||+||++||+
T Consensus 95 r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IAr 174 (330)
T PRK09473 95 RAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAM 174 (330)
T ss_pred hcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHH
Confidence 24556655431 1000 0011000 0 00 0123457999999999999
Q ss_pred HHhhCCCEEEEcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 196 VENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 196 al~~~P~vlilDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|++.+|++||+||||+++|. +++..+.++ |.|+|++||+.+.+..+||+++ +|.+|++++.|++++++..
T Consensus 175 AL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~--vm~~G~ive~g~~~~i~~~ 252 (330)
T PRK09473 175 ALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVL--VMYAGRTMEYGNARDVFYQ 252 (330)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhC
Confidence 99999999999999999995 455566554 9999999999999989999999 9999999999999999875
Q ss_pred ch
Q 017797 268 CQ 269 (365)
Q Consensus 268 ~~ 269 (365)
+.
T Consensus 253 p~ 254 (330)
T PRK09473 253 PS 254 (330)
T ss_pred CC
Confidence 43
No 102
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=7.5e-27 Score=216.88 Aligned_cols=164 Identities=16% Similarity=0.200 Sum_probs=126.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------------ 152 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------------ 152 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.|.
T Consensus 5 ~~~l~~~~~~~~i--l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 82 (242)
T PRK11124 5 LNGINCFYGAHQA--LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRR 82 (242)
T ss_pred EEeeEEEECCeee--EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHh
Confidence 6789999987655 99999999999999999999999999999999999876431
Q ss_pred eEEEEcCCCcccCCCC--------------Cchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCE
Q 017797 153 RVVIVDTSNEIGGDGD--------------IPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEV 203 (365)
Q Consensus 153 ~i~~i~~~~ei~~~~~--------------~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~v 203 (365)
.+.++++...+..... ..... +. . .+....+|+|++||+++++|+..+|++
T Consensus 83 ~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l 162 (242)
T PRK11124 83 NVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred heEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 1333333222111000 00000 00 0 022345799999999999999999999
Q ss_pred EEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 204 IIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 204 lilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
+|+|||++++|. +.+.++.++|.|+|+++|+.++...+||+++ ++.+|+++..|+++++
T Consensus 163 lilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~--~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 163 LLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVV--YMENGHIVEQGDASCF 228 (242)
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEE--EEECCEEEEeCCHHHh
Confidence 999999999995 3455555679999999999999988999999 9999999999988765
No 103
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=3.6e-27 Score=214.38 Aligned_cols=153 Identities=18% Similarity=0.257 Sum_probs=115.7
Q ss_pred eeeEEEEECC--cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------eEEE
Q 017797 97 IVGLTCRVGR--AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVI 156 (365)
Q Consensus 97 i~~l~~r~~~--~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------~i~~ 156 (365)
+++++++|+. ..+ ++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.+
T Consensus 2 ~~~l~~~~~~~~~~i--l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 2 LKNLSFSYPDGARPA--LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred ceeEEEecCCCCeee--ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 5689999976 445 99999999999999999999999999999999999877431 2344
Q ss_pred EcCCCc--ccCC------------CCCchh----hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 157 VDTSNE--IGGD------------GDIPHS----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 157 i~~~~e--i~~~------------~~~~~~----~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
+++... +... ...... .+. . .++...+|+||+||+++++|++.+|++||+|
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 159 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD 159 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 443321 1100 000000 000 0 0234557999999999999999999999999
Q ss_pred CCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCc
Q 017797 208 EIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 253 (365)
Q Consensus 208 Ep~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g 253 (365)
|||+++|. +.+.+++++|.+||++||+.+++..+||+++ ++++|
T Consensus 160 EPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~--~l~~G 210 (211)
T cd03225 160 EPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVI--VLEDG 210 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEeCC
Confidence 99999995 3455556668999999999999998999988 77665
No 104
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.94 E-value=8.1e-27 Score=218.53 Aligned_cols=166 Identities=20% Similarity=0.317 Sum_probs=129.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.|++
T Consensus 4 ~~~l~~~~~~~~i--l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 4 LSRVSWSAGGRLI--VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred EEeEEEEECCEEE--EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 6789999987666 9999999999999999999999999999999999987743 1245555
Q ss_pred CCCcccCC---------CCC--------c--hh--hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD---------GDI--------P--HS--AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~---------~~~--------~--~~--~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+... ... + .. .+. . .+....+|+|++||+++++|++.+|+++|+
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 161 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLL 161 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44322110 000 0 00 000 0 022345799999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|||++++|. +.+.++.++|.|||+++|+.+.+..+||+++ ++++|+++..|+++++..
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 162 DEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVV--VLDGGRVVAAGPPREVLT 226 (256)
T ss_pred cCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEeCCCEEEecCHHHhhC
Confidence 999999995 3455556668999999999999999999999 999999999999887654
No 105
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.2e-26 Score=214.20 Aligned_cols=167 Identities=17% Similarity=0.186 Sum_probs=128.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| ..+.++.+.
T Consensus 3 ~~~l~~~~~~~~i--l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 3 LENVSKFYGGFVA--LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred EEeEEEEeCCeee--eccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 6789999987655 9999999999999999999999999999999999988733 123333333
Q ss_pred CcccCCCCCc-------------hh----hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 161 NEIGGDGDIP-------------HS----AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 161 ~ei~~~~~~~-------------~~----~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
..+.....+. .. .+.. .+....+|+|++||++++++++.+|+++++|||+++
T Consensus 81 ~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~g 160 (232)
T cd03300 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160 (232)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 2221100000 00 0000 022344699999999999999999999999999999
Q ss_pred HHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 213 AEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 213 ~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|. +.+.++.++ |.|||+++|+.+++..+||+++ ++++|+++..|+++++...
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~--~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIA--VMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEE--EEECCEEEecCCHHHHHhC
Confidence 995 345555554 8999999999999889999999 9999999999988777643
No 106
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=7.8e-27 Score=222.23 Aligned_cols=169 Identities=16% Similarity=0.186 Sum_probs=129.4
Q ss_pred eeeEEEEECCcc---cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------------
Q 017797 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------- 152 (365)
Q Consensus 97 i~~l~~r~~~~~---~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~--------------------- 152 (365)
+++++++|.... ...++++++.+.+|++++|+||||||||||+++|+|++.|+.|.
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (286)
T PRK13646 5 FDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVR 84 (286)
T ss_pred EEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH
Confidence 679999996421 12499999999999999999999999999999999999887431
Q ss_pred -eEEEEcCCCc--ccCC------------CCCchhhh-----------hh-----hhhccCCCcchhHHHHHHHHHhhCC
Q 017797 153 -RVVIVDTSNE--IGGD------------GDIPHSAI-----------GT-----ARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 153 -~i~~i~~~~e--i~~~------------~~~~~~~~-----------~~-----~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
+++++++... +... ..+..... +. .+....+|+||+||+++|+||+.+|
T Consensus 85 ~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p 164 (286)
T PRK13646 85 KRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNP 164 (286)
T ss_pred hheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 2444444321 1000 00111000 00 0234557999999999999999999
Q ss_pred CEEEEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 202 EVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 202 ~vlilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
++||+|||++++|. +.++++.+ .|.|||++||+++++..+||+++ ++++|+++..|++++++..
T Consensus 165 ~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~--~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 165 DIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVI--VMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhC
Confidence 99999999999995 34555554 48999999999999988999999 9999999999999988753
No 107
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.94 E-value=5.3e-27 Score=213.78 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=115.4
Q ss_pred eeeEEEEEC-CcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------------eE
Q 017797 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------------RV 154 (365)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~---------------------~i 154 (365)
+++++++|+ ...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.|. .+
T Consensus 4 ~~~l~~~~~~~~~i--l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 4 FHNVSKAYPGGVAA--LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEeeeEEeCCCcee--ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 678999994 4444 99999999999999999999999999999999999876331 23
Q ss_pred EEEcCCCcccCCCC-------------Cchh----hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 155 VIVDTSNEIGGDGD-------------IPHS----AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 155 ~~i~~~~ei~~~~~-------------~~~~----~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
.++.+...+..... .... .+.. .+....+|+||+||+++++|++.+|++||+
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllL 161 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLA 161 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 34433322211000 0000 0000 022345799999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcE
Q 017797 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 254 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~ 254 (365)
||||+++|. +.++++.++|.|||++||+.+++..+||+++ ++++|+
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~--~l~~G~ 214 (214)
T TIGR02673 162 DEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVI--ILDDGR 214 (214)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEE--EecCCC
Confidence 999999995 3455555679999999999999998999998 777663
No 108
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.7e-27 Score=207.97 Aligned_cols=152 Identities=15% Similarity=0.248 Sum_probs=113.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-cc-------cC-CC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EI-------GG-DG 167 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~-ei-------~~-~~ 167 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+. +.|.+-..+. .. .. ..
T Consensus 3 ~~~l~~~~~~~~~--l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 3 LKNVSKRYGQKTV--LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDS-GSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred EEEEEEEECCeEE--EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCEEccccchhHHHHhhcEE
Confidence 5689999977555 999999999999999999999999999999999998873 4444322110 00 00 00
Q ss_pred CCchhh-----hhhhhhccC-CCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHc-CcEEEEEEc
Q 017797 168 DIPHSA-----IGTARRMQV-PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAH 233 (365)
Q Consensus 168 ~~~~~~-----~~~~~~~~~-~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H 233 (365)
.+++.. ......... +|+|++||+++++|++.+|+++++|||++++|. +.+.+++++ |.|+|+++|
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 159 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159 (178)
T ss_pred EEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 011110 000112222 899999999999999999999999999999995 345555666 899999999
Q ss_pred CcchhHHhhhHHHHHHHcCc
Q 017797 234 GEWLENIIKNPILSDLIGGV 253 (365)
Q Consensus 234 ~~~~~~~~~d~i~~~ll~~g 253 (365)
+.++...+||+++ ++++|
T Consensus 160 ~~~~~~~~~d~i~--~l~~g 177 (178)
T cd03229 160 DLDEAARLADRVV--VLRDG 177 (178)
T ss_pred CHHHHHHhcCEEE--EEeCC
Confidence 9999988899988 77665
No 109
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.94 E-value=5.8e-27 Score=213.43 Aligned_cols=157 Identities=20% Similarity=0.255 Sum_probs=119.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------CeEEEEcCCCcc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------KRVVIVDTSNEI 163 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------~~i~~i~~~~ei 163 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| .++.++++...+
T Consensus 2 ~~~l~~~~~~~~~--l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 2 VEDLTVSYGGHPV--LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred cccceeEECCEEe--eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 5689999986555 9999999999999999999999999999999999988743 235566554322
Q ss_pred c--C-C--------CCC---------chh---hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCC
Q 017797 164 G--G-D--------GDI---------PHS---AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (365)
Q Consensus 164 ~--~-~--------~~~---------~~~---~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp 209 (365)
. . . ... ... .+.. .+....+|+||+||+++++|++.+|++||+|||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 159 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1 0 0 000 000 0000 123456799999999999999999999999999
Q ss_pred CcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEe
Q 017797 210 GTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (365)
Q Consensus 210 ~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~ 258 (365)
|+++|. +.+.+++++|.|||++||+.+++..+||+++ ++++| +++.
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~--~l~~~-~~~~ 212 (213)
T cd03235 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVL--LLNRT-VVAS 212 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEcCc-Eeec
Confidence 999995 3455555678999999999999999999999 78765 5544
No 110
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8.7e-27 Score=219.49 Aligned_cols=166 Identities=13% Similarity=0.208 Sum_probs=128.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|++..+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.++.
T Consensus 14 i~~l~~~~~~~~i--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 91 (265)
T PRK10575 14 LRNVSFRVPGRTL--LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLP 91 (265)
T ss_pred EeeEEEEECCEEE--EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEec
Confidence 6789999976655 9999999999999999999999999999999999987633 1245554
Q ss_pred CCCcccCC---------CCC---------chh---hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD---------GDI---------PHS---AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~---------~~~---------~~~---~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+... ... ... .+. . .+....+|+||+||+++|+|++.+|++||+
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllL 171 (265)
T PRK10575 92 QQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLL 171 (265)
T ss_pred cCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 43222110 000 000 000 0 022345799999999999999999999999
Q ss_pred cCCCcHHHHH-------HHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEAH-------ACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~~-------~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||||+++|.. .+.++.++ |.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 172 DEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~--~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 172 DEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLV--ALRGGEMIAQGTPAELMR 237 (265)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCeEEEecCHHHhcC
Confidence 9999999963 45555554 8999999999999989999999 999999999998887654
No 111
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.94 E-value=1.3e-26 Score=215.90 Aligned_cols=165 Identities=16% Similarity=0.130 Sum_probs=126.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC-----CCC-------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-----FQK------------------- 152 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~-----~~~------------------- 152 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+ .|.
T Consensus 4 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 81 (247)
T TIGR00972 4 IENLNLFYGEKEA--LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELR 81 (247)
T ss_pred EEEEEEEECCeee--ecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHH
Confidence 6789999987655 99999999999999999999999999999999999865 321
Q ss_pred -eEEEEcCCCcccCC------------CC-Cchhh----h-------hh--------hhhccCCCcchhHHHHHHHHHhh
Q 017797 153 -RVVIVDTSNEIGGD------------GD-IPHSA----I-------GT--------ARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 153 -~i~~i~~~~ei~~~------------~~-~~~~~----~-------~~--------~~~~~~~S~g~~~r~~la~al~~ 199 (365)
.+.++++...+... .. .+... + +. .+....+|+||+||+++|+|++.
T Consensus 82 ~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 161 (247)
T TIGR00972 82 RRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAV 161 (247)
T ss_pred hheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 23333332211100 00 00000 0 00 01234579999999999999999
Q ss_pred CCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 200 MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+|++||+||||+++|. +.+..+.+ +.|||+++|+.+++..+||+++ ++++|+++..|++++++.
T Consensus 162 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 162 EPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTA--FFYDGELVEYGPTEQIFT 232 (247)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHh
Confidence 9999999999999995 34445545 5899999999999999999999 999999999999988764
No 112
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-26 Score=218.63 Aligned_cols=166 Identities=16% Similarity=0.243 Sum_probs=129.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.|++
T Consensus 10 i~~l~~~~~~~~~--l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 87 (265)
T PRK10253 10 GEQLTLGYGKYTV--AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLA 87 (265)
T ss_pred EEEEEEEECCEEE--eeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEee
Confidence 7799999987655 9999999999999999999999999999999999987633 1244444
Q ss_pred CCCcccCC---------CCCc---------hh---hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD---------GDIP---------HS---AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~---------~~~~---------~~---~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+... ...+ .. .+.. .+....+|+|++||+++++|++.+|++|++
T Consensus 88 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 167 (265)
T PRK10253 88 QNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLL 167 (265)
T ss_pred ccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEE
Confidence 43222110 0000 00 0000 133455799999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||||+++|. +.+.++.+ .|.|||+++|+.+++..+||+++ ++++|+++..|+++++..
T Consensus 168 DEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 168 DEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLI--ALREGKIVAQGAPKEIVT 233 (265)
T ss_pred eCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhh
Confidence 999999995 34555555 48999999999999999999999 999999999999887654
No 113
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.4e-26 Score=224.62 Aligned_cols=170 Identities=18% Similarity=0.120 Sum_probs=129.6
Q ss_pred eeeEEEEECCc--ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc----CCC-------------------
Q 017797 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD----EFQ------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~----~~~------------------- 151 (365)
++++++.|... ...+++++++.+.+|++++|+|+||||||||+++|+|++++ +.|
T Consensus 6 v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 85 (330)
T PRK15093 6 IRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRK 85 (330)
T ss_pred EeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHH
Confidence 67899999421 11249999999999999999999999999999999999863 211
Q ss_pred ---CeEEEEcCCCcccCC-------------CC--C-----ch-----hhhh-hh-------------hhccCCCcchhH
Q 017797 152 ---KRVVIVDTSNEIGGD-------------GD--I-----PH-----SAIG-TA-------------RRMQVPEPSLQH 189 (365)
Q Consensus 152 ---~~i~~i~~~~ei~~~-------------~~--~-----~~-----~~~~-~~-------------~~~~~~S~g~~~ 189 (365)
+.+.++++....... .. . .. ..+. .. +....+|+||+|
T Consensus 86 ~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~Q 165 (330)
T PRK15093 86 LVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQ 165 (330)
T ss_pred HhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 246666654321100 00 0 00 0000 00 123357999999
Q ss_pred HHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCH
Q 017797 190 KVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 261 (365)
Q Consensus 190 r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~ 261 (365)
|+++|+||+.+|++||+||||+++|. ++++++.+ .|.|||++||+++++..+||+++ +|++|++++.|++
T Consensus 166 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~--vm~~G~ive~g~~ 243 (330)
T PRK15093 166 KVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKIN--VLYCGQTVETAPS 243 (330)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEECCH
Confidence 99999999999999999999999995 45566655 49999999999999999999999 9999999999999
Q ss_pred HHHHHhc
Q 017797 262 EARARRC 268 (365)
Q Consensus 262 ~~~~~~~ 268 (365)
++++..+
T Consensus 244 ~~i~~~p 250 (330)
T PRK15093 244 KELVTTP 250 (330)
T ss_pred HHHHhCC
Confidence 9987653
No 114
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.94 E-value=4.2e-27 Score=231.33 Aligned_cols=166 Identities=13% Similarity=0.108 Sum_probs=126.7
Q ss_pred eEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE----------------------
Q 017797 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI---------------------- 156 (365)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~---------------------- 156 (365)
.+.++|+.... ++++++.+++|++++|+||||||||||+++|+|++.|+. +.|.+
T Consensus 29 ~~~~~~g~~~~--l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~-G~I~idG~~~~~~i~~~~~~~l~~~r~ 105 (382)
T TIGR03415 29 EILDETGLVVG--VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSR-GSVLVKDGDGSIDVANCDAATLRRLRT 105 (382)
T ss_pred HHHHhhCCEEE--EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC-cEEEECCEecccccccCCHHHHHHHhc
Confidence 45667766666 899999999999999999999999999999999998874 33332
Q ss_pred -----EcCCCcccCCCCCchhhh-----------------h-hh----------hhccCCCcchhHHHHHHHHHhhCCCE
Q 017797 157 -----VDTSNEIGGDGDIPHSAI-----------------G-TA----------RRMQVPEPSLQHKVMIEAVENHMPEV 203 (365)
Q Consensus 157 -----i~~~~ei~~~~~~~~~~~-----------------~-~~----------~~~~~~S~g~~~r~~la~al~~~P~v 203 (365)
+++...+.....+.++.. . .. +....+|+||+||+++|+||+.+|++
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 222221111000000000 0 00 22335799999999999999999999
Q ss_pred EEEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 204 IIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 204 lilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
|++|||++++|+ +.+.++.+ .|.|+|++||+.+++..+||+++ +|++|+++..|+++++...+.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~--vl~~G~iv~~g~~~ei~~~p~ 257 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIA--IMEGGRIIQHGTPEEIVLNPA 257 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEecCHHHHhhCcc
Confidence 999999999996 34555555 48999999999999999999999 999999999999999976543
No 115
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8.8e-27 Score=220.56 Aligned_cols=166 Identities=17% Similarity=0.223 Sum_probs=126.6
Q ss_pred eeeEEEEEC-CcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------eEEE
Q 017797 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVI 156 (365)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------------------~i~~ 156 (365)
+++++++|. ...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.|. .+.+
T Consensus 4 ~~~l~~~~~~~~~~--l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 4 LENVSYSYPDGTPA--LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEcCCCCce--eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 678999995 3334 99999999999999999999999999999999999876331 2334
Q ss_pred EcCCCc--ccCC------------CCCchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 157 VDTSNE--IGGD------------GDIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 157 i~~~~e--i~~~------------~~~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
+.+... +... ..+.... +.. .+....+|+||+||+++|+|++.+|++||+|
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 161 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD 161 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 433321 1100 0000000 000 0234457999999999999999999999999
Q ss_pred CCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 208 EIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 208 Ep~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|||+++|. +.+.++.+.|.|||++||+.+.+. .||+++ ++++|+++..|++++++..
T Consensus 162 EPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~--~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 162 EVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRII--VMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEE--EEECCEEEEECCHHHHhcC
Confidence 99999995 345555667999999999999885 599999 9999999999999987653
No 116
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=7.9e-27 Score=221.44 Aligned_cols=168 Identities=18% Similarity=0.260 Sum_probs=127.7
Q ss_pred eeeEEEEECCcc-cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEE
Q 017797 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i 157 (365)
+++++++|++.. ...++++++.+++|++++|+||||||||||+++|+|++.|+.| .++.++
T Consensus 7 ~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v 86 (279)
T PRK13650 7 VKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMV 86 (279)
T ss_pred EEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEE
Confidence 679999997421 1249999999999999999999999999999999999988743 123444
Q ss_pred cCCCc--ccCC------------CCCchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcC
Q 017797 158 DTSNE--IGGD------------GDIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (365)
Q Consensus 158 ~~~~e--i~~~------------~~~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDE 208 (365)
.+... +... .++.... +.. .+....+|+||+||+++|+|++.+|++||+||
T Consensus 87 ~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE 166 (279)
T PRK13650 87 FQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDE 166 (279)
T ss_pred EcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 44321 1100 0011000 000 02334579999999999999999999999999
Q ss_pred CCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 209 IGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 209 p~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
||+++|. +.+.+++++ |.|||++||+.+.+. .||+++ ++++|+++..|++++++..
T Consensus 167 Pt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~--~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 167 ATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVL--VMKNGQVESTSTPRELFSR 230 (279)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEE--EEECCEEEEECCHHHHHcC
Confidence 9999995 345556554 999999999999884 799999 9999999999999988754
No 117
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1e-26 Score=217.95 Aligned_cols=161 Identities=16% Similarity=0.131 Sum_probs=122.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------eEEEEcCCCcc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEI 163 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------------~i~~i~~~~ei 163 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.++.+...+
T Consensus 4 ~~~l~~~~~~~~i--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~ 81 (255)
T PRK11248 4 ISHLYADYGGKPA--LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGL 81 (255)
T ss_pred EEEEEEEeCCeee--EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCcc
Confidence 6789999987555 99999999999999999999999999999999999887431 23444443222
Q ss_pred cCCC-------------CCchh----hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH
Q 017797 164 GGDG-------------DIPHS----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (365)
Q Consensus 164 ~~~~-------------~~~~~----~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~ 215 (365)
.... ..... .+. . .+....+|+||+||++++++++.+|++||+||||+++|.
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~ 161 (255)
T PRK11248 82 LPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161 (255)
T ss_pred CCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 1100 01100 000 0 023445799999999999999999999999999999995
Q ss_pred -------HHHHHHH-HcCcEEEEEEcCcchhHHhhhHHHHHHHc--CcEEEEecCH
Q 017797 216 -------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIG--GVDTVTLGDE 261 (365)
Q Consensus 216 -------~~i~~~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~--~g~iv~~g~~ 261 (365)
+.+.++. +.|.|||++||+.+++..+||+++ +++ +|+++..++.
T Consensus 162 ~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~--~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 162 FTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELV--LLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEeCCCcEEEEEecC
Confidence 3445553 358999999999999999999999 887 5999887654
No 118
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-26 Score=224.34 Aligned_cols=168 Identities=14% Similarity=0.174 Sum_probs=128.4
Q ss_pred eeeEEEEECCcc---cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeE-------------------
Q 017797 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV------------------- 154 (365)
Q Consensus 97 i~~l~~r~~~~~---~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i------------------- 154 (365)
+++++++|.... ...++++++.+++|++++|+||||||||||+++|+|++.|+.| .|
T Consensus 24 ~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G-~I~i~g~~~~~~~~~~~~~~~ 102 (320)
T PRK13631 24 VKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYG-TIQVGDIYIGDKKNNHELITN 102 (320)
T ss_pred EEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEECCEEccccccccccccc
Confidence 678999997431 1259999999999999999999999999999999999988733 22
Q ss_pred ----------------EEEcCCCc--ccCC--------C----CCchhhh----h-------h-----hhhccCCCcchh
Q 017797 155 ----------------VIVDTSNE--IGGD--------G----DIPHSAI----G-------T-----ARRMQVPEPSLQ 188 (365)
Q Consensus 155 ----------------~~i~~~~e--i~~~--------~----~~~~~~~----~-------~-----~~~~~~~S~g~~ 188 (365)
+++.+..+ +... . ..+.... . . .+....+|+||+
T Consensus 103 ~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqk 182 (320)
T PRK13631 103 PYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQK 182 (320)
T ss_pred ccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHH
Confidence 33333221 1000 0 0000000 0 0 022345799999
Q ss_pred HHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCH
Q 017797 189 HKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 261 (365)
Q Consensus 189 ~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~ 261 (365)
||+++|+||+++|++||+||||+++|. +.+..+.++|.|||++||+++++..+||+++ ++++|+++..|++
T Consensus 183 qRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~--vl~~G~i~~~g~~ 260 (320)
T PRK13631 183 RRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI--VMDKGKILKTGTP 260 (320)
T ss_pred HHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCH
Confidence 999999999999999999999999995 3455555679999999999998888999999 9999999999999
Q ss_pred HHHHHh
Q 017797 262 EARARR 267 (365)
Q Consensus 262 ~~~~~~ 267 (365)
++++..
T Consensus 261 ~~~~~~ 266 (320)
T PRK13631 261 YEIFTD 266 (320)
T ss_pred HHHhcC
Confidence 988753
No 119
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.94 E-value=1.3e-26 Score=208.48 Aligned_cols=158 Identities=17% Similarity=0.179 Sum_probs=118.3
Q ss_pred eeeEEEEECCc----ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcc--ccCCCCeEEE--------------
Q 017797 97 IVGLTCRVGRA----VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQKRVVI-------------- 156 (365)
Q Consensus 97 i~~l~~r~~~~----~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll--~~~~~~~i~~-------------- 156 (365)
+++++++|+.. ....++++++.+++|++++|+||||||||||+++|+|++ +|.. +.|.+
T Consensus 6 ~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~-G~i~~~g~~~~~~~~~~~i 84 (194)
T cd03213 6 FRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVS-GEVLINGRPLDKRSFRKII 84 (194)
T ss_pred EEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCc-eEEEECCEeCchHhhhheE
Confidence 67899999752 112499999999999999999999999999999999999 7763 34433
Q ss_pred --EcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcE
Q 017797 157 --VDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVM 227 (365)
Q Consensus 157 --i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~t 227 (365)
+++...+.....+.++ +....+...+|+|++||+++++|++.+|+++++|||++++|. +.+.++.++|.|
T Consensus 85 ~~~~q~~~~~~~~t~~~~-i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~t 163 (194)
T cd03213 85 GYVPQDDILHPTLTVRET-LMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRT 163 (194)
T ss_pred EEccCcccCCCCCcHHHH-HHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence 2222111000001110 001112226899999999999999999999999999999995 345555667999
Q ss_pred EEEEEcCcc-hhHHhhhHHHHHHHcCcEEEEe
Q 017797 228 LIGTAHGEW-LENIIKNPILSDLIGGVDTVTL 258 (365)
Q Consensus 228 Vi~t~H~~~-~~~~~~d~i~~~ll~~g~iv~~ 258 (365)
+|+++|+.+ +...+||+++ ++++|+++..
T Consensus 164 iii~sh~~~~~~~~~~d~v~--~l~~G~i~~~ 193 (194)
T cd03213 164 IICSIHQPSSEIFELFDKLL--LLSQGRVIYF 193 (194)
T ss_pred EEEEecCchHHHHHhcCEEE--EEeCCEEEec
Confidence 999999996 6777899999 9999998764
No 120
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=6.3e-27 Score=217.99 Aligned_cols=163 Identities=13% Similarity=0.179 Sum_probs=126.3
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC------cc--------c----CCCCCchhh
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN------EI--------G----GDGDIPHSA 173 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~------ei--------~----~~~~~~~~~ 173 (365)
+.++++.++.|+++.|+|-+|||||||+|++++++.|+.| +|.+-.... ++ . ....+|+..
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G-~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG-EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc-eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 6778888999999999999999999999999999999853 443322110 00 0 001222221
Q ss_pred hh-----------------------h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-----
Q 017797 174 IG-----------------------T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA----- 215 (365)
Q Consensus 174 ~~-----------------------~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~----- 215 (365)
+. . .++...+|||||||+++||||..+|++|++|||+|.+|+
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~ 202 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTE 202 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHH
Confidence 10 0 134567899999999999999999999999999999996
Q ss_pred --HHHHHHH-HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchHHHHHhhC
Q 017797 216 --HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERKA 277 (365)
Q Consensus 216 --~~i~~~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~~~~~~~~ 277 (365)
+.+.++. +-.+||+++||+++++-.+.|++. +|.+|++|..|+|+++..+|.......+.
T Consensus 203 mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIa--imkdG~ivQ~Gtp~eIl~~PAndYV~~Fv 265 (386)
T COG4175 203 MQDELLELQAKLKKTIVFITHDLDEALRIGDRIA--IMKDGEIVQVGTPEEILLNPANDYVRDFV 265 (386)
T ss_pred HHHHHHHHHHHhCCeEEEEecCHHHHHhccceEE--EecCCeEEEeCCHHHHHcCccHHHHHHHH
Confidence 3344443 448999999999999999999999 99999999999999999887766555443
No 121
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.94 E-value=1.5e-26 Score=218.14 Aligned_cols=169 Identities=16% Similarity=0.209 Sum_probs=127.4
Q ss_pred eeeEEEEECCc-------ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------
Q 017797 97 IVGLTCRVGRA-------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----------------- 152 (365)
Q Consensus 97 i~~l~~r~~~~-------~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~----------------- 152 (365)
+++++++|+.. ....++++++.+++|++++|+|||||||||||++|+|+++|+.|.
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 86 (267)
T PRK15112 7 VRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRS 86 (267)
T ss_pred EeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHh
Confidence 67999999631 112489999999999999999999999999999999999887431
Q ss_pred -eEEEEcCCCc--ccC--------------CCCCchh----hhh-hh-----------hhccCCCcchhHHHHHHHHHhh
Q 017797 153 -RVVIVDTSNE--IGG--------------DGDIPHS----AIG-TA-----------RRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 153 -~i~~i~~~~e--i~~--------------~~~~~~~----~~~-~~-----------~~~~~~S~g~~~r~~la~al~~ 199 (365)
.+.++++... +.. ...+... .+. .. .....+|+||+||+++|+|+++
T Consensus 87 ~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~ 166 (267)
T PRK15112 87 QRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALIL 166 (267)
T ss_pred ccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHh
Confidence 2444444321 000 0000000 000 00 1234579999999999999999
Q ss_pred CCCEEEEcCCCcHHHHH-------HHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 200 MPEVIIVDEIGTEAEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~~-------~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|++||+|||++++|.. .+.++.+ .|.|||+++|+.+.+..+||+++ ++++|+++..|+++++...
T Consensus 167 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 240 (267)
T PRK15112 167 RPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVL--VMHQGEVVERGSTADVLAS 240 (267)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEE--EEECCEEEecCCHHHHhcC
Confidence 99999999999999953 4555554 48999999999999999999999 9999999999998887653
No 122
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.94 E-value=7.5e-27 Score=206.26 Aligned_cols=154 Identities=18% Similarity=0.222 Sum_probs=112.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-cc-----c-CCCCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EI-----G-GDGDI 169 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~-ei-----~-~~~~~ 169 (365)
+++++++|+......++++++.+.+|++++|+||||||||||+++|+|+++|+. +.|.+-.... .+ . ....+
T Consensus 3 ~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (173)
T cd03246 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTS-GRVRLDGADISQWDPNELGDHVGYL 81 (173)
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCC-CeEEECCEEcccCCHHHHHhheEEE
Confidence 568999997532224899999999999999999999999999999999998874 4443321110 00 0 00001
Q ss_pred chhh-hhh-hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHH
Q 017797 170 PHSA-IGT-ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENI 240 (365)
Q Consensus 170 ~~~~-~~~-~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~ 240 (365)
++.. +.. .-.-.++|+|++||+++++|++.+|++||+|||++++|. +.+..+.++|.|+|+++|+.++..
T Consensus 82 ~q~~~~~~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~- 160 (173)
T cd03246 82 PQDDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA- 160 (173)
T ss_pred CCCCccccCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-
Confidence 1110 000 000112899999999999999999999999999999995 345555667999999999999875
Q ss_pred hhhHHHHHHHcCcE
Q 017797 241 IKNPILSDLIGGVD 254 (365)
Q Consensus 241 ~~d~i~~~ll~~g~ 254 (365)
.||+++ ++++|+
T Consensus 161 ~~d~v~--~l~~G~ 172 (173)
T cd03246 161 SADRIL--VLEDGR 172 (173)
T ss_pred hCCEEE--EEECCC
Confidence 699988 777765
No 123
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.94 E-value=7.9e-27 Score=212.36 Aligned_cols=154 Identities=16% Similarity=0.199 Sum_probs=116.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC--------------------eEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------RVVI 156 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~--------------------~i~~ 156 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.+
T Consensus 3 ~~~l~~~~~~~~~--l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 3 IKNLHKSFGDFHV--LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred EEEEEEEECCeEe--ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 5789999987655 99999999999999999999999999999999999876331 1333
Q ss_pred EcCCCcccCCC--------------CCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 157 VDTSNEIGGDG--------------DIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 157 i~~~~ei~~~~--------------~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
+++...+.... ...... +. . .+....+|+||+||+++++|++.+|++||+|
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 160 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 33332211100 000000 00 0 1223457999999999999999999999999
Q ss_pred CCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcE
Q 017797 208 EIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 254 (365)
Q Consensus 208 Ep~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~ 254 (365)
||++++|. +.+.+++++|.|||+++|+.+++..+||+++ ++++|+
T Consensus 161 EP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~--~l~~g~ 212 (213)
T cd03262 161 EPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVI--FMDDGR 212 (213)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEeCCc
Confidence 99999995 3455556678999999999999989999998 777775
No 124
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.7e-26 Score=215.50 Aligned_cols=166 Identities=16% Similarity=0.152 Sum_probs=127.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC------------------Ce
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQ------------------KR 153 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~-----~~~------------------~~ 153 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++| +.| ..
T Consensus 6 ~~~l~~~~~~~~~--l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14247 6 IRDLKVSFGQVEV--LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRR 83 (250)
T ss_pred EEeeEEEECCeee--eecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhcc
Confidence 6789999987655 9999999999999999999999999999999999864 221 23
Q ss_pred EEEEcCCCcccCCC-------------CC--chh----hh-------hh--------hhhccCCCcchhHHHHHHHHHhh
Q 017797 154 VVIVDTSNEIGGDG-------------DI--PHS----AI-------GT--------ARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 154 i~~i~~~~ei~~~~-------------~~--~~~----~~-------~~--------~~~~~~~S~g~~~r~~la~al~~ 199 (365)
+.++++...+.... .. ... .+ +. ......+|+|++||+++++|++.
T Consensus 84 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 163 (250)
T PRK14247 84 VQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF 163 (250)
T ss_pred EEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 44554443221100 00 000 00 00 01234579999999999999999
Q ss_pred CCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|++|++|||++++|.. .+.++. .|.|+|+++|+.+++..+||+++ ++++|+++..|+++++...
T Consensus 164 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14247 164 QPEVLLADEPTANLDPENTAKIESLFLELK-KDMTIVLVTHFPQQAARISDYVA--FLYKGQIVEWGPTREVFTN 235 (250)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEE--EEECCeEEEECCHHHHHcC
Confidence 99999999999999953 344443 48999999999999888999999 9999999999999887654
No 125
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.94 E-value=1.5e-25 Score=210.66 Aligned_cols=217 Identities=30% Similarity=0.522 Sum_probs=166.9
Q ss_pred EEEEEecCCceEEEEeCccCceecCCCCCCHHHHHHHHHHHhcc----------------CCCeeeEecCce----EEEE
Q 017797 29 LEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEF----------------GGDNRAGIEGTL----HRIS 88 (365)
Q Consensus 29 ~ei~l~~g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~----------------~~~~~~~~~g~~----~rv~ 88 (365)
+||+|++|+|..+.+.+.-. +.....+|.++++.+++.++.| .+|+|+++.|+. ..+.
T Consensus 1 ~eiri~inrP~~v~~~~~~~--~~~~~~lt~~~l~~l~~~la~~s~~~~~~~~~~~~~tlpgG~Rv~i~~~p~~~~g~v~ 78 (270)
T TIGR02858 1 EEIRIRVGRPLELVFDGEEV--FVTDYIPTVEDVNYILQLISNYSLYAFEEELKQGYITIEGGHRVGLAGRCVTENGKVK 78 (270)
T ss_pred CeEEEECCCCCEEEECCCCE--EEecccCCHHHHHHHHHHHHhccccccccccccceEEcCCCcEEEEEccceecCCEEE
Confidence 59999999999998765432 3333559999999999888654 588999998873 4666
Q ss_pred EEEecCCceeeEEEEECCcccCcchhhhhcc-cCC--cEEEEEcCCCCcHHHHHHHHHhccccCCC------CeEEEEcC
Q 017797 89 AIRSRKGAIVGLTCRVGRAVSGHIDMVYDLL-HYG--KSILFVGRPGVGKTTVMREIARVLSDEFQ------KRVVIVDT 159 (365)
Q Consensus 89 ~~~~~~~~i~~l~~r~~~~~~~~~~~l~~~l-~~g--~~v~iiGpnGsGKTTllr~l~gll~~~~~------~~i~~i~~ 159 (365)
.++. ++++++|..+...++.+.+-..+ ..| ..++|+||||||||||+++|+|++++..+ ..+..+++
T Consensus 79 tIR~----~s~~~~r~~~~~~~~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~ 154 (270)
T TIGR02858 79 TIKN----VSSLNIRIAREKLGAADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDE 154 (270)
T ss_pred EEEc----ccccEEEeccccCCcHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchh
Confidence 6776 66888888766555555544433 445 68999999999999999999999998742 34554555
Q ss_pred CCcccCC-CCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcCcchh
Q 017797 160 SNEIGGD-GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLE 238 (365)
Q Consensus 160 ~~ei~~~-~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~~~~~ 238 (365)
..+++.. ..+++..++ .+.+++..+.|...+++.++.++|++|++|||+...+...+....++|+++|+|+|+.+..
T Consensus 155 ~~ei~~~~~~~~q~~~~--~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 155 RSEIAGCVNGVPQHDVG--IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHhccccccccc--ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHHH
Confidence 5555432 456666554 4677888899988888889999999999999999988887777777899999999998877
Q ss_pred HHhhhHHHHHHHcCc
Q 017797 239 NIIKNPILSDLIGGV 253 (365)
Q Consensus 239 ~~~~d~i~~~ll~~g 253 (365)
+...++.+..+++.+
T Consensus 233 ~~~~r~~~~~l~~~~ 247 (270)
T TIGR02858 233 DLYKRPVFKELIENE 247 (270)
T ss_pred HHHhChHHHHHHhcC
Confidence 777777777777664
No 126
>PRK10908 cell division protein FtsE; Provisional
Probab=99.94 E-value=9.6e-27 Score=213.41 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=119.4
Q ss_pred eeeEEEEE-CCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------------eE
Q 017797 97 IVGLTCRV-GRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------------RV 154 (365)
Q Consensus 97 i~~l~~r~-~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~---------------------~i 154 (365)
+++++++| +...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+
T Consensus 4 ~~~l~~~~~~~~~~--l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 4 FEHVSKAYLGGRQA--LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEeeEEEecCCCeE--EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 67899999 54444 99999999999999999999999999999999999877331 23
Q ss_pred EEEcCCCcccCCC-------------CCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 155 VIVDTSNEIGGDG-------------DIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 155 ~~i~~~~ei~~~~-------------~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
.++.+...+.... ...... +. . .+....+|+||+||+++++|+..+|++||+
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLA 161 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 3443332221100 010000 00 0 022345799999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEE
Q 017797 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 257 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~ 257 (365)
||||+++|. +.+.++.+.|.++|++||+.+++..+||+++ ++++|+++.
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~ 217 (222)
T PRK10908 162 DEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRML--TLSDGHLHG 217 (222)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEcc
Confidence 999999995 3455555668999999999999999999999 899998764
No 127
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.94 E-value=1.3e-26 Score=215.15 Aligned_cols=165 Identities=13% Similarity=0.115 Sum_probs=126.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------eEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------------------~i~~i 157 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++.|+.|. .+.++
T Consensus 5 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 82 (242)
T TIGR03411 5 LEGLSVSFDGFKA--LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRK 82 (242)
T ss_pred EEeeEEEcCCeEE--eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEe
Confidence 6789999976555 99999999999999999999999999999999999877431 23344
Q ss_pred cCCCcccCCCCCc---------------------hh----hhhh-----------hhhccCCCcchhHHHHHHHHHhhCC
Q 017797 158 DTSNEIGGDGDIP---------------------HS----AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 158 ~~~~ei~~~~~~~---------------------~~----~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
.+...+.....+. .. .+.. ......+|+|++||+++++|++.+|
T Consensus 83 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p 162 (242)
T TIGR03411 83 FQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDP 162 (242)
T ss_pred ccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 3322211100000 00 0000 0223457999999999999999999
Q ss_pred CEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 202 EVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 202 ~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++|++||||+++|.. .++.+.+ +.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 163 ~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~--~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 163 KLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVT--VLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred CEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEE--EEECCeEEeeCCHHHHhc
Confidence 999999999999963 3444444 7899999999999999999999 999999999999888753
No 128
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=7.2e-27 Score=204.70 Aligned_cols=164 Identities=20% Similarity=0.286 Sum_probs=133.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-------cc------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-------EI------ 163 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~-------ei------ 163 (365)
+++++|+|+...+ +++++..+++|+++.|+|||||||||||.+++++++.+. +.|. ++... ++
T Consensus 4 i~nv~K~y~~~~v--l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~-G~i~-i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 4 IENVSKSYGTKVV--LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS-GEIT-IDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred ehhhhHhhCCEEe--eccceeeecCCceeEEECCCCccHHHHHHHHHHhccccC-ceEE-EeeeecccCChHHHHHHHHH
Confidence 6689999999988 999999999999999999999999999999999999874 3333 32210 11
Q ss_pred ----------------cCCCCCchhh----------hh-----------hhhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 164 ----------------GGDGDIPHSA----------IG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 164 ----------------~~~~~~~~~~----------~~-----------~~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
...+.+|... +. .-+..+.+||||+||..+|.+++++-|++++
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlL 159 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLL 159 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEe
Confidence 0012222211 00 0145677899999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|||.+++|+ ..++.+++ -|+||+++.|+.+++..++|.++ -+.+|+++..|+|++++.
T Consensus 160 DEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IV--AlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 160 DEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIV--ALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred cCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhhee--eecCCEEEecCCHHHhcC
Confidence 999999995 45666654 49999999999999999999999 899999999999999976
No 129
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.5e-26 Score=220.64 Aligned_cols=168 Identities=10% Similarity=0.076 Sum_probs=126.9
Q ss_pred eeeEEEEECCcc---cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------------
Q 017797 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------- 152 (365)
Q Consensus 97 i~~l~~r~~~~~---~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~--------------------- 152 (365)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+++|+.|.
T Consensus 9 i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 88 (289)
T PRK13645 9 LDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRL 88 (289)
T ss_pred EEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHH
Confidence 679999997542 12499999999999999999999999999999999999876431
Q ss_pred --eEEEEcCCCccc-CC-------------CCCchhh----hh-h-----------hhhccCCCcchhHHHHHHHHHhhC
Q 017797 153 --RVVIVDTSNEIG-GD-------------GDIPHSA----IG-T-----------ARRMQVPEPSLQHKVMIEAVENHM 200 (365)
Q Consensus 153 --~i~~i~~~~ei~-~~-------------~~~~~~~----~~-~-----------~~~~~~~S~g~~~r~~la~al~~~ 200 (365)
.+.++.+..... .. ....... +. . .+....+|+||+||+++|+|++.+
T Consensus 89 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~ 168 (289)
T PRK13645 89 RKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMD 168 (289)
T ss_pred hccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 133333322100 00 0000000 00 0 022345799999999999999999
Q ss_pred CCEEEEcCCCcHHHHH-------HHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 201 PEVIIVDEIGTEAEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 201 P~vlilDEp~~~~d~~-------~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|++||+|||++++|.. .+.++.+ .|.|||++||+.+++..+||+++ ++++|+++..|+++++.+
T Consensus 169 p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 169 GNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVI--VMHEGKVISIGSPFEIFS 240 (289)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhc
Confidence 9999999999999953 3455544 48999999999999889999999 999999999999988765
No 130
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.3e-26 Score=219.92 Aligned_cols=168 Identities=13% Similarity=0.142 Sum_probs=127.6
Q ss_pred eeeEEEEECCcc---cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------------
Q 017797 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------- 152 (365)
Q Consensus 97 i~~l~~r~~~~~---~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~--------------------- 152 (365)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+++|+.|.
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (280)
T PRK13649 5 LQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIR 84 (280)
T ss_pred EEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHH
Confidence 678999997421 12489999999999999999999999999999999999876321
Q ss_pred -eEEEEcCCCc--ccCC------------CCCchhh----h-------hh-----hhhccCCCcchhHHHHHHHHHhhCC
Q 017797 153 -RVVIVDTSNE--IGGD------------GDIPHSA----I-------GT-----ARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 153 -~i~~i~~~~e--i~~~------------~~~~~~~----~-------~~-----~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
.+.|+.+... +... ....... + +. .+....+|+||+||+++|+|++.+|
T Consensus 85 ~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p 164 (280)
T PRK13649 85 KKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEP 164 (280)
T ss_pred hheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 2444444321 1100 0000000 0 00 0223457999999999999999999
Q ss_pred CEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 202 EVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 202 ~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++||+||||+++|.. .+.++++.|.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 165 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 165 KILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVY--VLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEE--EEECCEEEEeCCHHHHhc
Confidence 999999999999953 445555568999999999999999999999 999999999999988765
No 131
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2e-26 Score=215.39 Aligned_cols=166 Identities=15% Similarity=0.149 Sum_probs=125.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc-----cCCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~-----~~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++. |+.|
T Consensus 9 ~~~l~~~~~~~~i--l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 86 (253)
T PRK14242 9 ARGLSFFYGDFQA--LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELR 86 (253)
T ss_pred EeeeEEEECCeee--ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHh
Confidence 6789999986555 999999999999999999999999999999999864 2311
Q ss_pred CeEEEEcCCCcccCC------------CCC-chh----hh-------hh--------hhhccCCCcchhHHHHHHHHHhh
Q 017797 152 KRVVIVDTSNEIGGD------------GDI-PHS----AI-------GT--------ARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~-~~~----~~-------~~--------~~~~~~~S~g~~~r~~la~al~~ 199 (365)
..+.++.+...+... ... ... .+ +. .+....+|+||+||+++|+|++.
T Consensus 87 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~ 166 (253)
T PRK14242 87 RRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAV 166 (253)
T ss_pred hcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 124444443221110 000 000 00 00 01234579999999999999999
Q ss_pred CCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 200 MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|++|++||||+++|. +.+.++. .|.|||+++|+.+++..+||+++ ++++|+++..|++++++..
T Consensus 167 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14242 167 EPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQAARVSDVTA--FFYMGKLIEVGPTEQIFTR 238 (253)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHHHHHhCCEEE--EEECCEEEEeCCHHHHHcC
Confidence 9999999999999995 3444443 47899999999999999999999 9999999999998887643
No 132
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.94 E-value=8.2e-27 Score=207.32 Aligned_cols=157 Identities=16% Similarity=0.287 Sum_probs=120.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-ccc------CCCCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIG------GDGDI 169 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~-ei~------~~~~~ 169 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+ .+.|.+-+.+. ... ....+
T Consensus 2 ~~~l~~~~~~~~~--l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~-~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 2 VENLSVGYGGRTV--LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred eeEEEEEECCeee--EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCcCCHHHHHHHHhHH
Confidence 5689999987555 99999999999999999999999999999999999887 44554422111 000 00011
Q ss_pred chh--hhh----hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCc
Q 017797 170 PHS--AIG----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGE 235 (365)
Q Consensus 170 ~~~--~~~----~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~ 235 (365)
++. .++ ..+....+|+|++||++++++++.+|+++++|||++++|. +.+.++.++ |.|+|+++|+.
T Consensus 79 ~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~ 158 (180)
T cd03214 79 PQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL 158 (180)
T ss_pred HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 110 000 0133566899999999999999999999999999999985 344555555 89999999999
Q ss_pred chhHHhhhHHHHHHHcCcEEEEe
Q 017797 236 WLENIIKNPILSDLIGGVDTVTL 258 (365)
Q Consensus 236 ~~~~~~~d~i~~~ll~~g~iv~~ 258 (365)
+++..+||+++ ++++|+++..
T Consensus 159 ~~~~~~~d~~~--~l~~g~i~~~ 179 (180)
T cd03214 159 NLAARYADRVI--LLKDGRIVAQ 179 (180)
T ss_pred HHHHHhCCEEE--EEECCEEEec
Confidence 99888999999 8999998754
No 133
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.94 E-value=1.5e-26 Score=216.23 Aligned_cols=165 Identities=15% Similarity=0.196 Sum_probs=128.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCcccCC---
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGD--- 166 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------~~i~~i~~~~ei~~~--- 166 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.++++...+...
T Consensus 7 ~~~l~~~~~~~~v--l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~ 84 (251)
T PRK09544 7 LENVSVSFGQRRV--LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPL 84 (251)
T ss_pred EeceEEEECCceE--EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccCh
Confidence 6789999987655 9999999999999999999999999999999999988743 245666654322110
Q ss_pred ---------CCCchhhhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH-------HHH
Q 017797 167 ---------GDIPHSAIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACR 219 (365)
Q Consensus 167 ---------~~~~~~~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~-------~i~ 219 (365)
.......+.. .+....+|+||+||+++++|++.+|++|++|||++++|.. .+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 164 (251)
T PRK09544 85 TVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLID 164 (251)
T ss_pred hHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 0000011100 1234567999999999999999999999999999999953 344
Q ss_pred HHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 220 SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 220 ~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++.++ |.|||+++|+.+++..+||+++ ++++ +++..|+++++..
T Consensus 165 ~~~~~~g~tiiivsH~~~~i~~~~d~i~--~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 165 QLRRELDCAVLMVSHDLHLVMAKTDEVL--CLNH-HICCSGTPEVVSL 209 (251)
T ss_pred HHHHhcCCEEEEEecCHHHHHHhCCEEE--EECC-ceEeeCCHHHHhC
Confidence 55554 8999999999999999999999 7865 7889999988754
No 134
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.94 E-value=1.5e-26 Score=226.62 Aligned_cols=165 Identities=15% Similarity=0.107 Sum_probs=125.7
Q ss_pred eEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------------eEEE
Q 017797 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----------------------RVVI 156 (365)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~----------------------~i~~ 156 (365)
+++++|+... + ++++.+++|++++|+|||||||||||++|+|+++|+.|. .+.+
T Consensus 4 ~l~~~~~~~~---~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDFS---L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCEE---E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 7889997643 4 799999999999999999999999999999999876321 1333
Q ss_pred EcCCCcccCCCCCchh-----------h----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCC
Q 017797 157 VDTSNEIGGDGDIPHS-----------A----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (365)
Q Consensus 157 i~~~~ei~~~~~~~~~-----------~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~ 210 (365)
+.+...+.....+.++ . +. . .+....+|+||+||+++|+||+.+|++|++|||+
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPt 159 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPL 159 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3332221110000000 0 00 0 0223457999999999999999999999999999
Q ss_pred cHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 211 TEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 211 ~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
+++|. +.++++.++ |.|||++||+.+++..+||+++ ++++|+++..|++++++..+.
T Consensus 160 s~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~~~ 224 (354)
T TIGR02142 160 AALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVV--VLEDGRVAAAGPIAEVWASPD 224 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEeCCEEEEECCHHHHhcCcC
Confidence 99995 345555554 8999999999999999999999 999999999999999876543
No 135
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.5e-26 Score=219.17 Aligned_cols=166 Identities=14% Similarity=0.198 Sum_probs=127.8
Q ss_pred eeeEEEEECC-cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------------CeEE
Q 017797 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--------------------KRVV 155 (365)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~--------------------~~i~ 155 (365)
+++++++|+. ..+ ++++++.+.+|++++|+||||||||||+++|+|+++++.| ..+.
T Consensus 4 ~~~l~~~~~~~~~~--l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 4 TRDLKYSYPDGTEA--LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEeCCCCee--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 6789999963 334 9999999999999999999999999999999999987633 1234
Q ss_pred EEcCCCc--ccCC------------CCCchh----hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 156 IVDTSNE--IGGD------------GDIPHS----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 156 ~i~~~~e--i~~~------------~~~~~~----~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
++.+... +... ...... .+. . .+....+|+||+||+++++|++.+|++|++
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 161 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVL 161 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4444321 1000 000000 000 0 022345799999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||||+++|. +.+.++.++|.|||+++|+.+.+..+||+++ ++++|+++..|++++++.
T Consensus 162 DEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 162 DEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVY--VMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhc
Confidence 999999995 3455555669999999999999988999999 999999999999998765
No 136
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.2e-26 Score=211.17 Aligned_cols=157 Identities=20% Similarity=0.228 Sum_probs=118.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------CeEEEEcC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----------------KRVVIVDT 159 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----------------~~i~~i~~ 159 (365)
+++++++|+...+ ++++++.+++| +++|+||||||||||+++|+|+++|+.| ..+.++.+
T Consensus 3 ~~~~~~~~~~~~~--l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 3 LENLTKRYGKKRA--LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred EEEEEEEECCEEE--EcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 5689999977655 99999999999 9999999999999999999999987633 12344443
Q ss_pred CCcccCCCCC-------------chh----hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc
Q 017797 160 SNEIGGDGDI-------------PHS----AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 160 ~~ei~~~~~~-------------~~~----~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~ 211 (365)
...+.....+ +.. .+.. ......+|+||+||+++++|++.+|++|++||||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 159 (211)
T cd03264 80 EFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159 (211)
T ss_pred CCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 3222110000 000 0000 02234579999999999999999999999999999
Q ss_pred HHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEec
Q 017797 212 EAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (365)
Q Consensus 212 ~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g 259 (365)
++|.. .+.++.+ +.|||+++|+.+++..+||+++ ++++|+++..|
T Consensus 160 ~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~--~l~~g~i~~~g 211 (211)
T cd03264 160 GLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVA--VLNKGKLVFEG 211 (211)
T ss_pred cCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEE--EEECCEEEecC
Confidence 99963 4444444 5899999999999988999999 99999988654
No 137
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.94 E-value=1.9e-26 Score=217.20 Aligned_cols=168 Identities=15% Similarity=0.160 Sum_probs=127.4
Q ss_pred eeeEEEEECCc-------ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 017797 97 IVGLTCRVGRA-------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------ 151 (365)
Q Consensus 97 i~~l~~r~~~~-------~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------ 151 (365)
++++++.|+.. ....++++++.+++|++++|+||||||||||+++|+|+++|+.|
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (265)
T TIGR02769 5 VRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84 (265)
T ss_pred EEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHH
Confidence 67899999531 11249999999999999999999999999999999999987732
Q ss_pred ---CeEEEEcCCCc--ccCCC--------------CCchh----hhh-h-----------hhhccCCCcchhHHHHHHHH
Q 017797 152 ---KRVVIVDTSNE--IGGDG--------------DIPHS----AIG-T-----------ARRMQVPEPSLQHKVMIEAV 196 (365)
Q Consensus 152 ---~~i~~i~~~~e--i~~~~--------------~~~~~----~~~-~-----------~~~~~~~S~g~~~r~~la~a 196 (365)
..+.++++... +.... .+... .+. . ......+|+||+||+++|+|
T Consensus 85 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~lara 164 (265)
T TIGR02769 85 AFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARA 164 (265)
T ss_pred HHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 12444444321 11000 00000 000 0 02234579999999999999
Q ss_pred HhhCCCEEEEcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 197 ENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 197 l~~~P~vlilDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++.+|++||+|||++++|. +.+.++.++ |.|||+++|+.+.+..+||+++ ++++|+++..|+++++..
T Consensus 165 l~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 165 LAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVA--VMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEE--EEeCCEEEEECCHHHHcC
Confidence 9999999999999999995 345555554 8999999999999988999999 999999999999988764
No 138
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.8e-26 Score=216.56 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=126.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~-----~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++.+ +.|
T Consensus 15 ~~~l~~~~~~~~i--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 92 (258)
T PRK14268 15 VENLNLWYGEKQA--LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELR 92 (258)
T ss_pred EeeeEEEeCCeee--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHh
Confidence 6789999986555 9999999999999999999999999999999999864 322
Q ss_pred CeEEEEcCCCcccCC------------CCCchhh----hh-hh--------------hhccCCCcchhHHHHHHHHHhhC
Q 017797 152 KRVVIVDTSNEIGGD------------GDIPHSA----IG-TA--------------RRMQVPEPSLQHKVMIEAVENHM 200 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~~~~~----~~-~~--------------~~~~~~S~g~~~r~~la~al~~~ 200 (365)
..+.|+.+...+... ...+... +. .. +....+|+|++||+++++|++.+
T Consensus 93 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 172 (258)
T PRK14268 93 KNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVK 172 (258)
T ss_pred hhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 123333332221110 0011000 00 00 12345799999999999999999
Q ss_pred CCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 201 PEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 201 P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|++|++||||+++|. +.++++. +|.|||+++|+.+++..+||+++ ++++|+++..|++++++..
T Consensus 173 p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 173 PKIILFDEPTSALDPISTARIEDLIMNLK-KDYTIVIVTHNMQQAARISDYTG--FFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred CCEEEEeCCCcccCHHHHHHHHHHHHHHh-hCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhcC
Confidence 999999999999995 3444444 47999999999999989999999 9999999999999887653
No 139
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.94 E-value=2.4e-26 Score=213.32 Aligned_cols=164 Identities=18% Similarity=0.121 Sum_probs=124.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcc--ccCCCC-------------------eEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQK-------------------RVV 155 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll--~~~~~~-------------------~i~ 155 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|++ .|+.|. .+.
T Consensus 3 ~~~l~~~~~~~~~--l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 3 IKDLHVSVEDKEI--LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred EeeEEEEECCEEE--EeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 5789999986655 99999999999999999999999999999999995 454221 134
Q ss_pred EEcCCCcccCC--------------CC------Cchh----hhh-------h-----hhhcc-CCCcchhHHHHHHHHHh
Q 017797 156 IVDTSNEIGGD--------------GD------IPHS----AIG-------T-----ARRMQ-VPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 156 ~i~~~~ei~~~--------------~~------~~~~----~~~-------~-----~~~~~-~~S~g~~~r~~la~al~ 198 (365)
++.+...+... .. .... .+. . .+... .+|+||+||++++++++
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~ 160 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL 160 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh
Confidence 44433221100 00 0000 000 0 01233 38999999999999999
Q ss_pred hCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHh-hhHHHHHHHcCcEEEEecCHHHH
Q 017797 199 HMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 199 ~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~-~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
.+|++||+||||+++|. +.+.++.++|.|||++||+.+++..+ ||+++ ++++|+++..|+++++
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 161 LEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVH--VLLDGRIVKSGDVELA 232 (243)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEE--EEeCCEEEEecCHHHh
Confidence 99999999999999995 44555666789999999999999888 89999 9999999999988754
No 140
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.94 E-value=2.5e-26 Score=207.66 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=122.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcc--ccCCCCeEEEEcCCCc-c------cC-C
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQKRVVIVDTSNE-I------GG-D 166 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll--~~~~~~~i~~i~~~~e-i------~~-~ 166 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+. .|+ .+.|.+-..+.. . .. .
T Consensus 3 ~~~l~~~~~~~~~--l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~-~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 3 IKDLHVSVGGKEI--LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT-EGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred EEEEEEEeCCEEe--eeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC-ccEEEECCEECCcCCHHHHhhCcE
Confidence 5789999986555 99999999999999999999999999999999994 555 344443221100 0 00 0
Q ss_pred CCCchh-------hhhh-hhhc-cCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEE
Q 017797 167 GDIPHS-------AIGT-ARRM-QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIG 230 (365)
Q Consensus 167 ~~~~~~-------~~~~-~~~~-~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~ 230 (365)
..+++. .... .... ..+|+||+||++++++++.+|++|++||||+++|. +++.++.+.|.|||+
T Consensus 80 ~~v~q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii 159 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI 159 (200)
T ss_pred EEeecChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 011111 1100 1233 47899999999999999999999999999999995 345555666899999
Q ss_pred EEcCcchhHH-hhhHHHHHHHcCcEEEEecCHH
Q 017797 231 TAHGEWLENI-IKNPILSDLIGGVDTVTLGDEE 262 (365)
Q Consensus 231 t~H~~~~~~~-~~d~i~~~ll~~g~iv~~g~~~ 262 (365)
++|+.+.+.. +||+++ ++++|++++.|..+
T Consensus 160 ~sh~~~~~~~~~~d~i~--~l~~G~i~~~~~~~ 190 (200)
T cd03217 160 ITHYQRLLDYIKPDRVH--VLYDGRIVKSGDKE 190 (200)
T ss_pred EecCHHHHHHhhCCEEE--EEECCEEEEEccHH
Confidence 9999998887 799999 99999999988443
No 141
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.1e-26 Score=211.49 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=126.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+.. ..++++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.|+++.
T Consensus 4 ~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 79 (232)
T PRK10771 4 LTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQE 79 (232)
T ss_pred EEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecc
Confidence 67999999752 2379999999999999999999999999999999987743 124454443
Q ss_pred CcccCC---------CCCch---h-----hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 161 NEIGGD---------GDIPH---S-----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 161 ~ei~~~---------~~~~~---~-----~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
..+... ...+. . .+. . .+....+|+||+||++++++++.+|++||+|||+++
T Consensus 80 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~g 159 (232)
T PRK10771 80 NNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSA 159 (232)
T ss_pred cccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 222110 00000 0 000 0 023345799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 213 AEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 213 ~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|. +.+.++.+ .|.|||+++|+.+++..+||+++ ++++|+++..|+++++...
T Consensus 160 LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 160 LDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSL--VVADGRIAWDGPTDELLSG 220 (232)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 996 34555544 48999999999999989999999 9999999999999887653
No 142
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.94 E-value=1.5e-26 Score=205.27 Aligned_cols=158 Identities=12% Similarity=0.131 Sum_probs=116.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc-----ccC-CCCCc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-----IGG-DGDIP 170 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~e-----i~~-~~~~~ 170 (365)
+++++++|.......++++++.+++|++++|+||||||||||+++|+|+++|+. +.|.+-..... +.. ...++
T Consensus 3 ~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~i~~~~ 81 (178)
T cd03247 3 INNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ-GEITLDGVPVSDLEKALSSLISVLN 81 (178)
T ss_pred EEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC-CEEEECCEEHHHHHHHHHhhEEEEc
Confidence 568999997642124899999999999999999999999999999999998874 34432211100 000 00011
Q ss_pred hhh-h---hhhhh-ccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchh
Q 017797 171 HSA-I---GTARR-MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLE 238 (365)
Q Consensus 171 ~~~-~---~~~~~-~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~ 238 (365)
+.. + ..... ...+|+|++||+++++|++.+|+++++|||++++|.. .+.++. +|.|||+++|+.++.
T Consensus 82 q~~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~ 160 (178)
T cd03247 82 QRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGI 160 (178)
T ss_pred cCCeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHH
Confidence 100 0 00011 5578999999999999999999999999999999953 333443 489999999999988
Q ss_pred HHhhhHHHHHHHcCcEEEEec
Q 017797 239 NIIKNPILSDLIGGVDTVTLG 259 (365)
Q Consensus 239 ~~~~d~i~~~ll~~g~iv~~g 259 (365)
. .||+++ ++++|++++.|
T Consensus 161 ~-~~d~~~--~l~~g~i~~~~ 178 (178)
T cd03247 161 E-HMDKIL--FLENGKIIMQG 178 (178)
T ss_pred H-hCCEEE--EEECCEEEecC
Confidence 6 699999 89999987653
No 143
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.94 E-value=1.1e-26 Score=211.52 Aligned_cols=154 Identities=16% Similarity=0.226 Sum_probs=115.6
Q ss_pred eeeEEEEECC-cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------------eE
Q 017797 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------------RV 154 (365)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~---------------------~i 154 (365)
+++++++|.. ..+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+
T Consensus 3 ~~~l~~~~~~~~~~--l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 3 FINVTKTYPNGTAA--LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred EEEEEEEeCCCcee--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 5689999964 344 99999999999999999999999999999999999877321 13
Q ss_pred EEEcCCCcccCCC-------------CCchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 155 VIVDTSNEIGGDG-------------DIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 155 ~~i~~~~ei~~~~-------------~~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
.++.+...+.... ...... +.. .+....+|+||+||+++++|++.+|+++++
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 160 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 3333322211100 000000 000 022345799999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcE
Q 017797 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 254 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~ 254 (365)
||||+++|. +.++++.++|.|||+++|+.+++..+||+++ ++++|+
T Consensus 161 DEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~--~l~~G~ 213 (214)
T cd03292 161 DEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVI--ALERGK 213 (214)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEeCCc
Confidence 999999995 3455556679999999999999988999998 777775
No 144
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.7e-26 Score=214.70 Aligned_cols=166 Identities=11% Similarity=0.049 Sum_probs=126.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC----CCCe-------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKR------------------- 153 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~----~~~~------------------- 153 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+ ..+.
T Consensus 10 ~~~l~~~~~~~~i--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 87 (254)
T PRK14273 10 TENLNLFYTDFKA--LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELR 87 (254)
T ss_pred EeeeEEEeCCcee--ecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHh
Confidence 6789999986555 99999999999999999999999999999999999763 1222
Q ss_pred --EEEEcCCCcccCC------------CCC-chh----hhh---------------hhhhccCCCcchhHHHHHHHHHhh
Q 017797 154 --VVIVDTSNEIGGD------------GDI-PHS----AIG---------------TARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 154 --i~~i~~~~ei~~~------------~~~-~~~----~~~---------------~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
+.|+.+...+... ... ... .+. ...+...+|+||+||++++++++.
T Consensus 88 ~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 167 (254)
T PRK14273 88 RKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAI 167 (254)
T ss_pred hceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence 3344332211100 000 000 000 011234579999999999999999
Q ss_pred CCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 200 MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|++||+|||++++|. +.+..+. ++.|||+++|+.+++..+||+++ ++++|+++..|++++++..
T Consensus 168 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 239 (254)
T PRK14273 168 EPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTA--FFLNGCIEEESSTDELFFN 239 (254)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 9999999999999995 3455554 47899999999999989999999 9999999999999887653
No 145
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.7e-26 Score=219.11 Aligned_cols=167 Identities=19% Similarity=0.268 Sum_probs=127.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------eEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------~i~~i~ 158 (365)
+++++++|+......++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.|+.
T Consensus 8 ~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 87 (279)
T PRK13635 8 VEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVF 87 (279)
T ss_pred EEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEE
Confidence 77999999752222499999999999999999999999999999999999887431 234444
Q ss_pred CCCc--ccCC------------CCCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCC
Q 017797 159 TSNE--IGGD------------GDIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (365)
Q Consensus 159 ~~~e--i~~~------------~~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp 209 (365)
+... +... ...+... +. . .+....+|+||+||+++++|++.+|++||+|||
T Consensus 88 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 167 (279)
T PRK13635 88 QNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEA 167 (279)
T ss_pred eCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4321 1000 0001000 00 0 123445799999999999999999999999999
Q ss_pred CcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 210 GTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 210 ~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++++|. +.+..+.++ |.|||+++|+++.+. .||+++ ++.+|++++.|+++++..
T Consensus 168 t~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 168 TSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVI--VMNKGEILEEGTPEEIFK 229 (279)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEE--EEECCEEEEECCHHHHhc
Confidence 999995 345555655 899999999999886 599999 999999999999988765
No 146
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.94 E-value=1.4e-26 Score=237.20 Aligned_cols=166 Identities=15% Similarity=0.137 Sum_probs=130.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------eEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------------------~i~~i 157 (365)
+++++++|+...+ ++++++.+++|++++|+|||||||||||++|+|+++|+.|. .+.++
T Consensus 14 ~~~l~~~~~~~~i--l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 91 (510)
T PRK15439 14 ARSISKQYSGVEV--LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLV 91 (510)
T ss_pred EEeEEEEeCCcee--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 6799999987655 99999999999999999999999999999999999887321 24444
Q ss_pred cCCCcccCCCCC--------c-h----hhhh-----------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHH
Q 017797 158 DTSNEIGGDGDI--------P-H----SAIG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (365)
Q Consensus 158 ~~~~ei~~~~~~--------~-~----~~~~-----------~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~ 213 (365)
.+...+.....+ . . ..+. ..+....+|+||+||+++|+||+.+|++||+||||+++
T Consensus 92 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~L 171 (510)
T PRK15439 92 PQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASL 171 (510)
T ss_pred eccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 443222110000 0 0 0000 01234567999999999999999999999999999999
Q ss_pred HH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 214 EA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 214 d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|. +.+++++++|.+||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 172 D~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 172 TPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRIS--VMRDGTIALSGKTADLST 229 (510)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEecChHHcCH
Confidence 95 3455666779999999999999999999999 999999999999887643
No 147
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.94 E-value=2.2e-26 Score=216.29 Aligned_cols=164 Identities=15% Similarity=0.178 Sum_probs=127.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC--CC----------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--QK---------------------- 152 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~--~~---------------------- 152 (365)
++++++.|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+. .+
T Consensus 7 ~~nl~~~~~~~~i--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (262)
T PRK09984 7 VEKLAKTFNQHQA--LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKS 84 (262)
T ss_pred EeeEEEEeCCeEE--EecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHH
Confidence 6789999987666 999999999999999999999999999999999997642 12
Q ss_pred --eEEEEcCCCcccCCCCC----------------------chh---hhh-h----------hhhccCCCcchhHHHHHH
Q 017797 153 --RVVIVDTSNEIGGDGDI----------------------PHS---AIG-T----------ARRMQVPEPSLQHKVMIE 194 (365)
Q Consensus 153 --~i~~i~~~~ei~~~~~~----------------------~~~---~~~-~----------~~~~~~~S~g~~~r~~la 194 (365)
.+.|+++...+.....+ ... .+. . .+....+|+|++||++++
T Consensus 85 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 164 (262)
T PRK09984 85 RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIA 164 (262)
T ss_pred HhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHH
Confidence 24455443322110000 000 000 0 023445799999999999
Q ss_pred HHHhhCCCEEEEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 195 AVENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 195 ~al~~~P~vlilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
+|+..+|++||+|||++++|. +.+.++.+ .|.|||+++|+.+++..+||+++ ++++|+++..|+++++
T Consensus 165 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~--~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 165 RALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIV--ALRQGHVFYDGSSQQF 240 (262)
T ss_pred HHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHh
Confidence 999999999999999999995 34555554 48999999999999889999999 9999999999998875
No 148
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.94 E-value=1.9e-26 Score=213.35 Aligned_cols=167 Identities=18% Similarity=0.181 Sum_probs=126.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+......++++++.+.+|++++|+||||||||||+++|+|+++|+.| .++.+++
T Consensus 3 ~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (237)
T cd03252 3 FEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVL 82 (237)
T ss_pred EEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEc
Confidence 5689999964222248999999999999999999999999999999999987743 1355555
Q ss_pred CCCcccCC----------CCCchhhhhh----------------------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD----------GDIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------------------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+... .......+.. ......+|+||+||+++++|++.+|++||+
T Consensus 83 q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 162 (237)
T cd03252 83 QENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIF 162 (237)
T ss_pred CCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 44332110 0000000000 012356899999999999999999999999
Q ss_pred cCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 207 DEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 207 DEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|||++++|.. .+.++. +|.|||+++|+.+++. .||+++ ++++|+++..|++++++..
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~-~~d~v~--~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 163 DEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVK-NADRII--VMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred eCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHH-hCCEEE--EEECCEEEEEcCHHHHHhc
Confidence 9999999953 344444 4899999999999886 599999 9999999999999887653
No 149
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.94 E-value=3.4e-26 Score=214.56 Aligned_cols=167 Identities=17% Similarity=0.159 Sum_probs=127.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------------ 152 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------------ 152 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|.
T Consensus 9 ~~~l~~~~~~~~i--l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~ 86 (258)
T PRK11701 9 VRGLTKLYGPRKG--CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRL 86 (258)
T ss_pred EeeeEEEcCCcee--eeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHH
Confidence 6799999976555 99999999999999999999999999999999999876331
Q ss_pred ---eEEEEcCCCcccCC--C-------------C-Cchh----hh-------hh-----hhhccCCCcchhHHHHHHHHH
Q 017797 153 ---RVVIVDTSNEIGGD--G-------------D-IPHS----AI-------GT-----ARRMQVPEPSLQHKVMIEAVE 197 (365)
Q Consensus 153 ---~i~~i~~~~ei~~~--~-------------~-~~~~----~~-------~~-----~~~~~~~S~g~~~r~~la~al 197 (365)
.+.|+.+....... . . .... .+ +. .+....+|+||+||+++|+|+
T Consensus 87 ~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral 166 (258)
T PRK11701 87 LRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNL 166 (258)
T ss_pred hhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHH
Confidence 13344333210000 0 0 0000 00 00 022445799999999999999
Q ss_pred hhCCCEEEEcCCCcHHHHH-------HHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 198 NHMPEVIIVDEIGTEAEAH-------ACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 198 ~~~P~vlilDEp~~~~d~~-------~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+.+|++||+|||++++|.. .++.+.++ |.|||+++|+.+++..+||+++ ++++|+++..|++++++..
T Consensus 167 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~--~l~~g~i~~~~~~~~~~~~ 242 (258)
T PRK11701 167 VTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLL--VMKQGRVVESGLTDQVLDD 242 (258)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE--EEECCEEEEeCCHHHHhcC
Confidence 9999999999999999953 34444444 8999999999999998999999 9999999999999887643
No 150
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.94 E-value=3.2e-26 Score=212.22 Aligned_cols=166 Identities=17% Similarity=0.199 Sum_probs=127.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.++++.
T Consensus 3 i~~l~~~~~~~~i--l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 3 IANISKRFGSFQA--LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred EEEEEEEECCeee--eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 6789999987655 9999999999999999999999999999999999987633 123444433
Q ss_pred CcccCCCC-------------Cchh----hhh-hh----------hhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 161 NEIGGDGD-------------IPHS----AIG-TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 161 ~ei~~~~~-------------~~~~----~~~-~~----------~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
..+..... .... .+. .. +....+|+||+||++++++++.+|+++++|||+++
T Consensus 81 ~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~ 160 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGA 160 (237)
T ss_pred hhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 22211000 0000 000 00 22345799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 213 AEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 213 ~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+|. +.+.++.+. |.|||++||+.+++..+||+++ ++++|+++..|+.+++..
T Consensus 161 LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~--~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 161 LDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIV--VMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEE--EEECCEEEEecCHHHHHc
Confidence 995 344455554 8999999999999889999999 999999999998887754
No 151
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.94 E-value=3.6e-26 Score=213.68 Aligned_cols=165 Identities=18% Similarity=0.189 Sum_probs=125.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------- 156 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~-------------------- 156 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|.. +.|.+
T Consensus 6 ~~~l~~~~~~~~~--l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR02323 6 VSGLSKSYGGGKG--CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH-GTATYIMRSGAELELYQLSEAERRR 82 (253)
T ss_pred EeeeEEEeCCceE--eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEEecccccccccccCCHHHHHH
Confidence 6789999976555 999999999999999999999999999999999998764 33332
Q ss_pred --------EcCCCcccCCCCCc--hh------------------hh-------hh-----hhhccCCCcchhHHHHHHHH
Q 017797 157 --------VDTSNEIGGDGDIP--HS------------------AI-------GT-----ARRMQVPEPSLQHKVMIEAV 196 (365)
Q Consensus 157 --------i~~~~ei~~~~~~~--~~------------------~~-------~~-----~~~~~~~S~g~~~r~~la~a 196 (365)
+.+........... .+ .+ +. .+....+|+||+||+++|+|
T Consensus 83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lara 162 (253)
T TIGR02323 83 LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARN 162 (253)
T ss_pred hhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHH
Confidence 22221100000000 00 00 00 01233479999999999999
Q ss_pred HhhCCCEEEEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 197 ENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 197 l~~~P~vlilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++.+|++|++|||++++|. +.+.++.+ .|.|||+++|+.+.+..+||+++ ++++|+++..|+++++..
T Consensus 163 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~--~l~~G~i~~~~~~~~~~~ 238 (253)
T TIGR02323 163 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLL--VMQQGRVVESGLTDQVLD 238 (253)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEECCEEEEECCHHHHhc
Confidence 9999999999999999995 33444444 48999999999999988999999 999999999999887764
No 152
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=1.5e-26 Score=205.95 Aligned_cols=149 Identities=15% Similarity=0.147 Sum_probs=111.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-cc------c-CCCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EI------G-GDGD 168 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~-ei------~-~~~~ 168 (365)
+++++++| + ++++++.+++|++++|+||||||||||+++|+|+++|+. +.|.+-.... .. . ....
T Consensus 7 ~~~l~~~~----~--l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (182)
T cd03215 7 VRGLSVKG----A--VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPAS-GEITLDGKPVTRRSPRDAIRAGIAY 79 (182)
T ss_pred EeccEEEe----e--ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEECCccCHHHHHhCCeEE
Confidence 66888888 4 899999999999999999999999999999999998874 3443322110 00 0 0001
Q ss_pred Cchh----------hhhh-hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEE
Q 017797 169 IPHS----------AIGT-ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIG 230 (365)
Q Consensus 169 ~~~~----------~~~~-~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~ 230 (365)
+++. .+.. ......+|+||+||+++++|++.+|++|++|||++++|. +.+.++.++|.|+|+
T Consensus 80 ~~q~~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 159 (182)
T cd03215 80 VPEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLL 159 (182)
T ss_pred ecCCcccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 1111 1110 000111899999999999999999999999999999995 345555566899999
Q ss_pred EEcCcchhHHhhhHHHHHHHcCcE
Q 017797 231 TAHGEWLENIIKNPILSDLIGGVD 254 (365)
Q Consensus 231 t~H~~~~~~~~~d~i~~~ll~~g~ 254 (365)
++|+.+++..+||+++ ++++|+
T Consensus 160 ~sh~~~~~~~~~d~v~--~l~~G~ 181 (182)
T cd03215 160 ISSELDELLGLCDRIL--VMYEGR 181 (182)
T ss_pred EeCCHHHHHHhCCEEE--EecCCc
Confidence 9999999999999998 777775
No 153
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.9e-26 Score=213.43 Aligned_cols=166 Identities=13% Similarity=0.131 Sum_probs=126.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC----CCCe-------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKR------------------- 153 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~----~~~~------------------- 153 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+ ..+.
T Consensus 7 ~~~l~~~~~~~~~--l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (253)
T PRK14267 7 TVNLRVYYGSNHV--IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVR 84 (253)
T ss_pred EEeEEEEeCCeee--eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHh
Confidence 6799999987555 99999999999999999999999999999999999763 1222
Q ss_pred --EEEEcCCCcccCC-------------CCC--chhh----hhh-h--------------hhccCCCcchhHHHHHHHHH
Q 017797 154 --VVIVDTSNEIGGD-------------GDI--PHSA----IGT-A--------------RRMQVPEPSLQHKVMIEAVE 197 (365)
Q Consensus 154 --i~~i~~~~ei~~~-------------~~~--~~~~----~~~-~--------------~~~~~~S~g~~~r~~la~al 197 (365)
+.++.+...+... ... +... +.. . +....+|+|++||+++++|+
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14267 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARAL 164 (253)
T ss_pred hceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHH
Confidence 3344333221110 000 0000 000 0 12334799999999999999
Q ss_pred hhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 198 NHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 198 ~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
..+|++||+|||++++|. +.+.++.+ +.|||+++|+.+++..+||+++ ++++|+++..|++++++..
T Consensus 165 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 238 (253)
T PRK14267 165 AMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVA--FLYLGKLIEVGPTRKVFEN 238 (253)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 999999999999999995 34444443 6899999999999989999999 9999999999999887643
No 154
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.93 E-value=1.7e-26 Score=211.41 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=115.7
Q ss_pred eeeEEEEECCcc--cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------------C
Q 017797 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------K 152 (365)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------------~ 152 (365)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+++|+.| .
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (221)
T TIGR02211 4 CENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNK 83 (221)
T ss_pred EEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHh
Confidence 668999996421 1248999999999999999999999999999999999987632 1
Q ss_pred eEEEEcCCCcccCCC-------------CCchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEE
Q 017797 153 RVVIVDTSNEIGGDG-------------DIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (365)
Q Consensus 153 ~i~~i~~~~ei~~~~-------------~~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vl 204 (365)
.+.++.+...+.... ...... +.. .+....+|+||+||+++|++++.+|++|
T Consensus 84 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~il 163 (221)
T TIGR02211 84 KLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLV 163 (221)
T ss_pred cEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 244444432221100 000000 000 0223457999999999999999999999
Q ss_pred EEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEE
Q 017797 205 IVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV 256 (365)
Q Consensus 205 ilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv 256 (365)
|+||||+++|. +.+..+.+ .|.|||++||+.+++.. +|+++ ++++|+++
T Consensus 164 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~--~l~~G~i~ 220 (221)
T TIGR02211 164 LADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVL--EMKDGQLF 220 (221)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEE--EEeCCEec
Confidence 99999999995 34555554 48999999999998865 79998 88888865
No 155
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.3e-26 Score=215.08 Aligned_cols=166 Identities=14% Similarity=0.128 Sum_probs=126.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc-----cCCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~-----~~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++. |+.|
T Consensus 24 ~~~l~~~~~~~~i--l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 101 (268)
T PRK14248 24 VKDLSIYYGEKRA--VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLR 101 (268)
T ss_pred EEEEEEEeCCcee--eeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHh
Confidence 6789999987655 999999999999999999999999999999999863 3322
Q ss_pred CeEEEEcCCCcccCC------------CCC-chh----hhh---------------hhhhccCCCcchhHHHHHHHHHhh
Q 017797 152 KRVVIVDTSNEIGGD------------GDI-PHS----AIG---------------TARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~-~~~----~~~---------------~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
.++.|+.+...+... ... ... .+. ..+....+|+||+||+++++|++.
T Consensus 102 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~ 181 (268)
T PRK14248 102 REIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM 181 (268)
T ss_pred ccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC
Confidence 124444443221110 000 000 000 002344579999999999999999
Q ss_pred CCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|++||+||||+++|.. .+.++.+ +.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 182 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~~~ 253 (268)
T PRK14248 182 KPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTA--FFLNGDLVEYDQTEQIFTS 253 (268)
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 99999999999999953 3444433 6899999999999989999999 9999999999999887654
No 156
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.93 E-value=2e-26 Score=231.12 Aligned_cols=173 Identities=17% Similarity=0.213 Sum_probs=135.0
Q ss_pred eeeEEEEECCcc--cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC---CC-------------------
Q 017797 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF---QK------------------- 152 (365)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~---~~------------------- 152 (365)
|+||++.|.... ..++++++|.+.+|++++|+|.+||||||++++|.|++++.. ++
T Consensus 8 V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~ 87 (539)
T COG1123 8 VENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRK 87 (539)
T ss_pred EeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHH
Confidence 778999997652 135899999999999999999999999999999999998662 23
Q ss_pred ----eEEEEcCCCcccCC----------------C------------------CCchhhhhhhhhccCCCcchhHHHHHH
Q 017797 153 ----RVVIVDTSNEIGGD----------------G------------------DIPHSAIGTARRMQVPEPSLQHKVMIE 194 (365)
Q Consensus 153 ----~i~~i~~~~ei~~~----------------~------------------~~~~~~~~~~~~~~~~S~g~~~r~~la 194 (365)
+|.+++|.+--... . ++|+.... .+....+||||+||+++|
T Consensus 88 ~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~-~~yPheLSGG~rQRv~iA 166 (539)
T COG1123 88 LRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR-DRYPHQLSGGMRQRVMIA 166 (539)
T ss_pred hccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh-ccCCcccCchHHHHHHHH
Confidence 33444333210000 0 00000000 024556799999999999
Q ss_pred HHHhhCCCEEEEcCCCcHHHH-------HHHHHHH-HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 195 AVENHMPEVIIVDEIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 195 ~al~~~P~vlilDEp~~~~d~-------~~i~~~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+||+.+|++||+||||+.+|. ++++.+. +.|.++|++||++..+..+||+++ +|.+|++|+.|+++++++
T Consensus 167 mALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~--Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 167 MALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVV--VMYKGEIVETGPTEEILS 244 (539)
T ss_pred HHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEE--EEECCEEEEecCHHHHHh
Confidence 999999999999999999994 5666665 569999999999999999999999 999999999999999998
Q ss_pred hchHHH
Q 017797 267 RCQKSI 272 (365)
Q Consensus 267 ~~~~~~ 272 (365)
++....
T Consensus 245 ~p~hpY 250 (539)
T COG1123 245 NPQHPY 250 (539)
T ss_pred ccCCcc
Confidence 765433
No 157
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.93 E-value=1.9e-26 Score=197.84 Aligned_cols=138 Identities=17% Similarity=0.242 Sum_probs=110.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhh
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT 176 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~ 176 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+. +.|. ++....+.+ ++
T Consensus 3 ~~~l~~~~~~~~~--l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~-G~i~-~~~~~~i~~---~~------ 69 (144)
T cd03221 3 LENLSKTYGGKLL--LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE-GIVT-WGSTVKIGY---FE------ 69 (144)
T ss_pred EEEEEEEECCceE--EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCc-eEEE-ECCeEEEEE---Ec------
Confidence 5689999977555 999999999999999999999999999999999998874 4443 333222211 11
Q ss_pred hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHH---H-HHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcC
Q 017797 177 ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---C-RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 252 (365)
Q Consensus 177 ~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~---i-~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~ 252 (365)
.+|+|++||++++++++.+|+++++|||++++|... + ..+.+.+.|+|+++|+.+++..+||+++ ++++
T Consensus 70 -----~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~--~l~~ 142 (144)
T cd03221 70 -----QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKII--ELED 142 (144)
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE--EEeC
Confidence 189999999999999999999999999999999632 2 2223346899999999999988999988 7766
Q ss_pred cE
Q 017797 253 VD 254 (365)
Q Consensus 253 g~ 254 (365)
|+
T Consensus 143 g~ 144 (144)
T cd03221 143 GK 144 (144)
T ss_pred CC
Confidence 53
No 158
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.2e-26 Score=208.30 Aligned_cols=156 Identities=15% Similarity=0.138 Sum_probs=118.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------eEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~----------------~i~~i~~~ 160 (365)
+++++++|+... .++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.++.+.
T Consensus 3 ~~~l~~~~~~~~----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 3 LDKIRFSYGEQP----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred EEeEEEEeCCEe----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 568999997532 2889999999999999999999999999999999887431 24555544
Q ss_pred CcccCC---------CCCc--------hhhhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 161 NEIGGD---------GDIP--------HSAIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 161 ~ei~~~---------~~~~--------~~~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
..+... .... ...+.. .+....+|+||+||+++++|++.+|++||+|||+++
T Consensus 79 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~ 158 (211)
T cd03298 79 NNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAA 158 (211)
T ss_pred cccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 322110 0000 000000 123456799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEe
Q 017797 213 AEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (365)
Q Consensus 213 ~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~ 258 (365)
+|. +.+.++.+ .|.|||++||+.+++..+||+++ ++++|+++..
T Consensus 159 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~~G~i~~~ 210 (211)
T cd03298 159 LDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVV--FLDNGRIAAQ 210 (211)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEE--EEECCEEeec
Confidence 995 34555544 48999999999999999999999 9999998764
No 159
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.5e-26 Score=212.29 Aligned_cols=161 Identities=14% Similarity=0.112 Sum_probs=119.0
Q ss_pred eeeEEEEECCcc--cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------------C
Q 017797 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------K 152 (365)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------------~ 152 (365)
+++++++|.... ...++++++.+++|++++|+||||||||||+++|+|+++|+.| .
T Consensus 8 ~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 87 (233)
T PRK11629 8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQ 87 (233)
T ss_pred EEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhc
Confidence 678999996421 1249999999999999999999999999999999999987632 1
Q ss_pred eEEEEcCCCcccCCC-------------CCchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEE
Q 017797 153 RVVIVDTSNEIGGDG-------------DIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (365)
Q Consensus 153 ~i~~i~~~~ei~~~~-------------~~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vl 204 (365)
.+.++.+...+.... ...... +.. .+....+|+||+||+++++|++.+|++|
T Consensus 88 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~ll 167 (233)
T PRK11629 88 KLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLV 167 (233)
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 245555443221100 000000 000 0223457999999999999999999999
Q ss_pred EEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecC
Q 017797 205 IVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (365)
Q Consensus 205 ilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~ 260 (365)
|+||||+++|. +.+.++++ .|.|||++||+.+++..+ ++++ ++++|+++..+.
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~--~l~~G~i~~~~~ 228 (233)
T PRK11629 168 LADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQL--EMRDGRLTAELS 228 (233)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEE--EEECCEEEEEec
Confidence 99999999995 34555544 589999999999988765 5777 889999987653
No 160
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.2e-26 Score=205.58 Aligned_cols=159 Identities=15% Similarity=0.181 Sum_probs=116.3
Q ss_pred eeeEEEEECCc--ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc--cCCCCeEE---------------EE
Q 017797 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--DEFQKRVV---------------IV 157 (365)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~--~~~~~~i~---------------~i 157 (365)
+++++++|... ....++++++.+++|++++|+||||||||||+++|+|+.. ++ .+.+. ++
T Consensus 6 ~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~-~G~i~~~g~~~~~~~~~~i~~~ 84 (192)
T cd03232 6 WKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI-TGEILINGRPLDKNFQRSTGYV 84 (192)
T ss_pred EeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc-ceEEEECCEehHHHhhhceEEe
Confidence 66899999641 1124899999999999999999999999999999999863 44 33333 22
Q ss_pred cCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEE
Q 017797 158 DTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIG 230 (365)
Q Consensus 158 ~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~ 230 (365)
.+...+.....+.++ +........+|+|++||+++++|++.+|++|++|||++++|. +.+.++++.|.|+|+
T Consensus 85 ~q~~~~~~~~tv~~~-l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 163 (192)
T cd03232 85 EQQDVHSPNLTVREA-LRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILC 163 (192)
T ss_pred cccCccccCCcHHHH-HHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 222111110011111 100011227899999999999999999999999999999995 345555666899999
Q ss_pred EEcCcc-hhHHhhhHHHHHHHcC-cEEEEec
Q 017797 231 TAHGEW-LENIIKNPILSDLIGG-VDTVTLG 259 (365)
Q Consensus 231 t~H~~~-~~~~~~d~i~~~ll~~-g~iv~~g 259 (365)
++|+.+ .+..+||+++ ++++ |++++.|
T Consensus 164 vtH~~~~~~~~~~d~i~--~l~~~g~i~~~g 192 (192)
T cd03232 164 TIHQPSASIFEKFDRLL--LLKRGGKTVYFG 192 (192)
T ss_pred EEcCChHHHHhhCCEEE--EEcCCCeEEeCC
Confidence 999998 4677899999 8887 9988754
No 161
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.93 E-value=4.9e-26 Score=213.03 Aligned_cols=166 Identities=16% Similarity=0.175 Sum_probs=127.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc----CCC----------------CeEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD----EFQ----------------KRVVI 156 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~----~~~----------------~~i~~ 156 (365)
+++++++| ...+ ++++++.+.+|++++|+||||||||||+++|+|+++| +.| ..+.|
T Consensus 7 ~~~l~~~~-~~~i--l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~ 83 (254)
T PRK10418 7 LRNIALQA-AQPL--VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIAT 83 (254)
T ss_pred EeCeEEEe-ccce--ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEE
Confidence 66899999 4444 9999999999999999999999999999999999987 432 23555
Q ss_pred EcCCCc--ccCCC-------------CCchh--hh-------hh-------hhhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 157 VDTSNE--IGGDG-------------DIPHS--AI-------GT-------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 157 i~~~~e--i~~~~-------------~~~~~--~~-------~~-------~~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
+.+... +.... ..... .+ +. ......+|+|++||+++++|++.+|++||
T Consensus 84 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLl 163 (254)
T PRK10418 84 IMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFII 163 (254)
T ss_pred EecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence 554432 11000 00000 00 00 01234579999999999999999999999
Q ss_pred EcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 206 VDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 206 lDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|||++++|. +.+..+.+ .|.|||+++|+.+.+..+||+++ ++++|+++..|+++++...
T Consensus 164 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 164 ADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVA--VMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEE--EEECCEEEEecCHHHHhhC
Confidence 9999999995 34555554 48999999999999988999999 9999999999999887653
No 162
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.4e-26 Score=218.44 Aligned_cols=168 Identities=15% Similarity=0.226 Sum_probs=127.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--Ce-------------------EE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--KR-------------------VV 155 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~--~~-------------------i~ 155 (365)
+++++++|.......++++++.+.+|++++|+||||||||||+++|+|++.|+.+ +. ++
T Consensus 8 i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig 87 (282)
T PRK13640 8 FKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVG 87 (282)
T ss_pred EEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheE
Confidence 6799999965322249999999999999999999999999999999999987642 22 44
Q ss_pred EEcCCCc--ccCC------------CCCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 156 IVDTSNE--IGGD------------GDIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 156 ~i~~~~e--i~~~------------~~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
++++... +... ....... +. . .+....+|+||+||+++++|++.+|++||+
T Consensus 88 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llll 167 (282)
T PRK13640 88 IVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIIL 167 (282)
T ss_pred EEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 4443321 1000 0000000 00 0 023445799999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 207 DEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|||++++|. +.+.++.++ |.|||++||+.+++. .||+++ ++++|++++.|++++++..
T Consensus 168 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 168 DESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVL--VLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEE--EEECCEEEEeCCHHHHhcC
Confidence 999999995 345555554 899999999999885 799999 9999999999999988653
No 163
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5.8e-26 Score=210.19 Aligned_cols=165 Identities=14% Similarity=0.192 Sum_probs=127.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+.. + ++++++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.++++.
T Consensus 3 ~~~l~~~~~~~-~--l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 3 VENLSKDWKEF-K--LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred eEeEEEEeCCc-e--eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 56899999763 4 9999999999999999999999999999999999988743 134444443
Q ss_pred CcccCCC-------------CCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 161 NEIGGDG-------------DIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 161 ~ei~~~~-------------~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
..+.... ...... +. . .+....+|+|++||+++++|+..+|+++++|||+++
T Consensus 80 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~g 159 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA 159 (235)
T ss_pred CccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCccc
Confidence 3221100 000000 00 0 123345799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 213 AEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 213 ~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+|. +.++++..+ |.|+|+++|+.+++..+||+++ ++++|+++..|++++...
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 160 LDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVA--IMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEecCHHHHHh
Confidence 995 344555444 9999999999999888999999 899999999998877654
No 164
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.7e-26 Score=212.29 Aligned_cols=167 Identities=18% Similarity=0.160 Sum_probs=127.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc--c---CCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--D---EFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~--~---~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++ | +.|
T Consensus 7 ~~nl~~~~~~~~~--l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 84 (252)
T PRK14256 7 LEQLNVHFGKNHA--VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIR 84 (252)
T ss_pred EEEEEEEeCCeeE--EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhh
Confidence 6799999986555 999999999999999999999999999999999985 3 211
Q ss_pred CeEEEEcCCCcccCCC-------------C-Cchh----hhh-hh--------------hhccCCCcchhHHHHHHHHHh
Q 017797 152 KRVVIVDTSNEIGGDG-------------D-IPHS----AIG-TA--------------RRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~~-------------~-~~~~----~~~-~~--------------~~~~~~S~g~~~r~~la~al~ 198 (365)
..+.++++...+.... . .... .+. .. .....+|+||+||+++++|++
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 164 (252)
T PRK14256 85 RRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA 164 (252)
T ss_pred ccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh
Confidence 1244444432221100 0 0000 000 00 113447999999999999999
Q ss_pred hCCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhc
Q 017797 199 HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (365)
Q Consensus 199 ~~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~ 268 (365)
.+|++||+|||++++|.. .+.++.+ +.|||+++|+.+++..+||+++ ++++|+++..|++++++..+
T Consensus 165 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~~ 238 (252)
T PRK14256 165 VKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTA--FFYMGDLVECGETKKIFTTP 238 (252)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEE--EEECCEEEEeCCHHHHHhCC
Confidence 999999999999999953 4555544 6899999999999989999999 99999999999998887543
No 165
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.93 E-value=4.7e-26 Score=207.61 Aligned_cols=158 Identities=12% Similarity=0.108 Sum_probs=120.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|.. . ..++++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.++++.
T Consensus 3 ~~~l~~~~~~--~--~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 3 LDKVRYEYEH--L--PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred EEeeeEEeCC--c--ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 5689999963 2 5689999999999999999999999999999999987743 124454444
Q ss_pred CcccCCCCC--------------c---hhhhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 161 NEIGGDGDI--------------P---HSAIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 161 ~ei~~~~~~--------------~---~~~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
..+.....+ + ...+. . .+....+|+||+||+++++++..+|+++++|||+++
T Consensus 79 ~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 158 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSA 158 (213)
T ss_pred CccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 322110000 0 00000 0 023445799999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecC
Q 017797 213 AEAH-------ACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (365)
Q Consensus 213 ~d~~-------~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~ 260 (365)
+|.. .+.++.++ |.|||+++|+.++...+||+++ ++++|+++..|+
T Consensus 159 LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~--~l~~g~i~~~~~ 212 (213)
T TIGR01277 159 LDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIA--VVSQGKIKVVSD 212 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEE--EEECCeEEEecC
Confidence 9953 45555554 8999999999999888999999 999999998764
No 166
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.8e-26 Score=208.28 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=116.6
Q ss_pred eEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------------eEEE
Q 017797 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----------------------RVVI 156 (365)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~----------------------~i~~ 156 (365)
+|+++|++.. + ++++.+.+ ++++|+||||||||||+++|+|+++|+.|. .+.+
T Consensus 5 ~l~~~~~~~~---~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPDFT---L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCCee---e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 7999998853 4 99999999 999999999999999999999999876331 2333
Q ss_pred EcCCCcccCCCCCch------------h---hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCC
Q 017797 157 VDTSNEIGGDGDIPH------------S---AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (365)
Q Consensus 157 i~~~~ei~~~~~~~~------------~---~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~ 210 (365)
+++...+.....+.+ . .+. . .+....+|+||+||++++++++.+|++||+||||
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 159 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPF 159 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 333322211000000 0 000 0 0233457999999999999999999999999999
Q ss_pred cHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEec
Q 017797 211 TEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (365)
Q Consensus 211 ~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g 259 (365)
+++|. +.+.+++++ |.|||++||+.+++..+||+++ ++++|+++..|
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~g 214 (214)
T cd03297 160 SALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIV--VMEDGRLQYIG 214 (214)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEE--EEECCEEEecC
Confidence 99995 345555554 8999999999999999999999 99999988654
No 167
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.93 E-value=3.7e-26 Score=210.25 Aligned_cols=158 Identities=19% Similarity=0.136 Sum_probs=117.2
Q ss_pred eeeEEEEECCcc--cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------------C
Q 017797 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------K 152 (365)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------------~ 152 (365)
+++++++|+... ...++++++.+.+|++++|+||||||||||+++|+|+++|+.| .
T Consensus 9 ~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 88 (228)
T PRK10584 9 VHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAK 88 (228)
T ss_pred EeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhh
Confidence 678999997521 1249999999999999999999999999999999999987632 1
Q ss_pred eEEEEcCCCcccCCC-------------CCchh----hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEE
Q 017797 153 RVVIVDTSNEIGGDG-------------DIPHS----AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (365)
Q Consensus 153 ~i~~i~~~~ei~~~~-------------~~~~~----~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vl 204 (365)
.+.++.+...+.... ..+.. .+.. .+....+|+|++||++++++++.+|++|
T Consensus 89 ~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~ll 168 (228)
T PRK10584 89 HVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVL 168 (228)
T ss_pred eEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 244444432221100 00000 0000 0234557999999999999999999999
Q ss_pred EEcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEE
Q 017797 205 IVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 257 (365)
Q Consensus 205 ilDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~ 257 (365)
|+||||+++|. +.+.+++++ |.|||+++|+.++.+. ||+++ ++++|++++
T Consensus 169 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~--~l~~g~i~~ 226 (228)
T PRK10584 169 FADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRL--RLVNGQLQE 226 (228)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEE--EEECCEEEe
Confidence 99999999995 345555444 8999999999998855 99999 889998864
No 168
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.8e-26 Score=215.64 Aligned_cols=167 Identities=16% Similarity=0.181 Sum_probs=126.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+......++++++.+++|++++|+||||||||||+++|+|+++|+.| ..+.++.
T Consensus 10 i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 89 (269)
T PRK13648 10 FKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVF 89 (269)
T ss_pred EEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEE
Confidence 6799999975321248999999999999999999999999999999999987633 1234444
Q ss_pred CCCc--ccCC------------CCCchh----hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCC
Q 017797 159 TSNE--IGGD------------GDIPHS----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (365)
Q Consensus 159 ~~~e--i~~~------------~~~~~~----~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp 209 (365)
+... +... ...+.. .+. . ......+|+|++||+++++|++.+|++||+|||
T Consensus 90 q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 169 (269)
T PRK13648 90 QNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEA 169 (269)
T ss_pred eChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3321 1000 000000 000 0 022345799999999999999999999999999
Q ss_pred CcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 210 GTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 210 ~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++++|. +.+.++.++ |.|||+++|+.+++.. ||+++ ++++|+++..|+++++..
T Consensus 170 t~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~--~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 170 TSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVI--VMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEE--EEECCEEEEecCHHHHhc
Confidence 999995 345555544 8999999999998875 99999 999999999999988765
No 169
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7e-26 Score=212.71 Aligned_cols=166 Identities=13% Similarity=0.137 Sum_probs=126.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc-----cCCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~-----~~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|++. |+.|
T Consensus 16 ~~~l~~~~~~~~i--l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~ 93 (260)
T PRK10744 16 VRNLNFYYGKFHA--LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLR 93 (260)
T ss_pred EEEEEEEeCCeEE--eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHh
Confidence 6689999986555 999999999999999999999999999999999985 2221
Q ss_pred CeEEEEcCCCcccCC-------------CCCchh----hh-------h--------hhhhccCCCcchhHHHHHHHHHhh
Q 017797 152 KRVVIVDTSNEIGGD-------------GDIPHS----AI-------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~-------------~~~~~~----~~-------~--------~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
.++.++.+...+... ...+.. .+ + ..+....+|+||+||+++|+|++.
T Consensus 94 ~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 173 (260)
T PRK10744 94 AKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI 173 (260)
T ss_pred cceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC
Confidence 124444443221110 001100 00 0 012234579999999999999999
Q ss_pred CCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|++||+|||++++|.. .+.++. ++.|||++||+.+.+..+||+++ ++++|+++..|+++++...
T Consensus 174 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 245 (260)
T PRK10744 174 RPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTA--FMYLGELIEFGNTDTIFTK 245 (260)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 99999999999999953 344443 47899999999999989999999 9999999999999887653
No 170
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.4e-26 Score=211.38 Aligned_cols=166 Identities=16% Similarity=0.117 Sum_probs=127.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC----CC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF----QK-------------------- 152 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~----~~-------------------- 152 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+. .+
T Consensus 7 ~~~l~~~~~~~~i--l~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 84 (251)
T PRK14249 7 IRGVNFFYHKHQV--LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLR 84 (251)
T ss_pred EEEEEEEECCeeE--ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhh
Confidence 6789999986555 999999999999999999999999999999999998752 12
Q ss_pred -eEEEEcCCCcccCC------------CCCc-h----hhh-------h--------hhhhccCCCcchhHHHHHHHHHhh
Q 017797 153 -RVVIVDTSNEIGGD------------GDIP-H----SAI-------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 153 -~i~~i~~~~ei~~~------------~~~~-~----~~~-------~--------~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
.+.++++...+... .... . ..+ + ..+....+|+||+||+++++|++.
T Consensus 85 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~ 164 (251)
T PRK14249 85 KRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAI 164 (251)
T ss_pred ceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 24444443322110 0000 0 000 0 002233479999999999999999
Q ss_pred CCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 200 MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|++||+|||++++|. +.+..+ .+|.|||+++|+.+.+..+||+++ ++++|+++..|+++++...
T Consensus 165 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14249 165 EPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTG--FLLTGDLVEYGRTGEIFSR 236 (251)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhCCEEE--EEeCCeEEEeCCHHHHHhC
Confidence 9999999999999995 334444 358999999999999999999999 9999999999999887654
No 171
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.2e-26 Score=211.41 Aligned_cols=166 Identities=16% Similarity=0.138 Sum_probs=126.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC----CC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF----QK-------------------- 152 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~----~~-------------------- 152 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+. .+
T Consensus 7 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T PRK14272 7 AQDVNIYYGDKQA--VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMR 84 (252)
T ss_pred EeeeEEEECCEEe--eccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhh
Confidence 6799999986655 999999999999999999999999999999999986531 12
Q ss_pred -eEEEEcCCCcccCC-------------CCC-chhh----h-------h--------hhhhccCCCcchhHHHHHHHHHh
Q 017797 153 -RVVIVDTSNEIGGD-------------GDI-PHSA----I-------G--------TARRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 153 -~i~~i~~~~ei~~~-------------~~~-~~~~----~-------~--------~~~~~~~~S~g~~~r~~la~al~ 198 (365)
.+.++++...+... ... .... . + .......+|+||+||+++++++.
T Consensus 85 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14272 85 RRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALA 164 (252)
T ss_pred ceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 24444433221110 000 0000 0 0 00123457999999999999999
Q ss_pred hCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 199 HMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 199 ~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
.+|++|++|||++++|. +.++++. ++.|+|+++|+.+.+..+||+++ ++++|+++..|++++++..
T Consensus 165 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14272 165 VEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMHQAARVSDTTS--FFLVGDLVEHGPTDQLFTN 237 (252)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 99999999999999995 3444444 47999999999999999999999 9999999999999887653
No 172
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.4e-26 Score=214.43 Aligned_cols=165 Identities=15% Similarity=0.152 Sum_probs=127.1
Q ss_pred eeeEEEEEC-CcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------CeEEEEcCC
Q 017797 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~---------------~~i~~i~~~ 160 (365)
+++++++|+ ...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| ..+.|+++.
T Consensus 9 ~~~l~~~~~~~~~i--l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~ 86 (272)
T PRK15056 9 VNDVTVTWRNGHTA--LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQS 86 (272)
T ss_pred EEeEEEEecCCcEE--EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccc
Confidence 678999996 3445 8999999999999999999999999999999999988633 135666554
Q ss_pred CcccC--C----CC-----C--------chh----hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 161 NEIGG--D----GD-----I--------PHS----AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 161 ~ei~~--~----~~-----~--------~~~----~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
..+.. . .. . +.. .... .+....+|+|++||+++++|++.+|++|++
T Consensus 87 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llll 166 (272)
T PRK15056 87 EEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILL 166 (272)
T ss_pred cccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 32100 0 00 0 000 0000 023445799999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|||++++|. +.+.+++++|.|||+++|+.+.+..+||+++ ++ +|+++..|+++++..
T Consensus 167 DEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~--~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 167 DEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTV--MV-KGTVLASGPTETTFT 230 (272)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EE-CCEEEeecCHHhccC
Confidence 999999995 3455556679999999999999989999987 77 799999999888653
No 173
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.93 E-value=3.5e-25 Score=201.61 Aligned_cols=211 Identities=17% Similarity=0.210 Sum_probs=173.3
Q ss_pred CCeEEEEEecCCceEEEEeCccCceecCCCCCCHHHHHHHHHHH------h----ccCCCeeeEecCc-eEEEEEEEecC
Q 017797 26 GQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAV------G----EFGGDNRAGIEGT-LHRISAIRSRK 94 (365)
Q Consensus 26 ~~~~ei~l~~g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~------~----~~~~~~~~~~~g~-~~rv~~~~~~~ 94 (365)
.++||+.+..|-||.++++|++. +.+..++|.++...++..+ . .+++.+.+...+. |||||+|.+++
T Consensus 17 ~~aSDlfIt~g~Ppsmkv~g~~t--pi~q~pLt~eq~~~i~~~iM~~~q~~eF~~~~EcNfai~~~~~gRfRvnAf~qr~ 94 (375)
T COG5008 17 QKASDLFITAGFPPSMKVDGKLT--PITQEPLTGEQTMAIAFSIMSAKQREEFEETHECNFAISARDIGRFRVNAFYQRG 94 (375)
T ss_pred cCCcceEEEcCCCcceeecCcee--ecCCCCCCHHHHHHHHHHHhhHHHHHHHHhcccceEEEEcCCCceEEeehhhhcC
Confidence 67999999999999999999875 8888999999988766443 1 2378888887655 99999999999
Q ss_pred CceeeEEEEECCccc------Ccchhhhhc-ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCC
Q 017797 95 GAIVGLTCRVGRAVS------GHIDMVYDL-LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG 167 (365)
Q Consensus 95 ~~i~~l~~r~~~~~~------~~~~~l~~~-l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~ 167 (365)
.. ++.+|-....+ +.++.+... +.+.+++.|+|++||||||+|.+|.|+-+.++.++|++++++.|+.+.
T Consensus 95 ~~--g~VlRrI~~~IPt~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIEDPIEfih~- 171 (375)
T COG5008 95 LA--GLVLRRIETKIPTFEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIEDPIEFIHK- 171 (375)
T ss_pred cc--hhhhhhhhccCCcHHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcccccCCCCceEEecChHHHHhc-
Confidence 66 89888766555 345555554 467789999999999999999999999999989999999999998542
Q ss_pred CCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 168 DIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 168 ~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
+... ...+.++.-+.....+++.-+|++.||||+++|+++.+.++...+++++||.+++|.|+.+.- +.-++++
T Consensus 172 ---h~~C-IvTQREvGvDTesw~~AlkNtlRQapDvI~IGEvRsretMeyAi~fAeTGHLcmaTLHAN~an-QaleRIi 245 (375)
T COG5008 172 ---HKRC-IVTQREVGVDTESWEVALKNTLRQAPDVILIGEVRSRETMEYAIQFAETGHLCMATLHANNAN-QALERII 245 (375)
T ss_pred ---ccce-eEEeeeeccchHHHHHHHHHHHhcCCCeEEEeecccHhHHHHHHHHHhcCceEEEEeccCCch-HHHHHHH
Confidence 1111 112345556678899999999999999999999999999999999999999999999999844 4455655
No 174
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.93 E-value=1.4e-26 Score=212.81 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=121.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC-----CcccCC--C--
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-----NEIGGD--G-- 167 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~-----~ei~~~--~-- 167 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+. +.|.+-... ...... .
T Consensus 25 ~~~~~~~~~~~~i--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~-G~i~~~g~~~~~~~~~~~~~~~~tv 101 (224)
T cd03220 25 ILGRKGEVGEFWA--LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS-GTVTVRGRVSSLLGLGGGFNPELTG 101 (224)
T ss_pred hhhhhhhcCCeEE--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCEEchhhcccccCCCCCcH
Confidence 5688999988777 999999999999999999999999999999999998874 444332110 001000 0
Q ss_pred -----------CCchhh----hh-------h----hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH------
Q 017797 168 -----------DIPHSA----IG-------T----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA------ 215 (365)
Q Consensus 168 -----------~~~~~~----~~-------~----~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~------ 215 (365)
...... .. . .+....+|+|++||++++++++.+|++||+|||++++|.
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~ 181 (224)
T cd03220 102 RENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKC 181 (224)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 000000 00 0 123456799999999999999999999999999999995
Q ss_pred -HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEec
Q 017797 216 -HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (365)
Q Consensus 216 -~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g 259 (365)
+.+.++.+.|.|||+++|+.+++..+||+++ ++++|+++..|
T Consensus 182 ~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~g 224 (224)
T cd03220 182 QRRLRELLKQGKTVILVSHDPSSIKRLCDRAL--VLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEecC
Confidence 3455555668999999999999989999999 89999987654
No 175
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.2e-26 Score=212.92 Aligned_cols=174 Identities=11% Similarity=0.128 Sum_probs=130.2
Q ss_pred EEEEEEEecCCceeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc--cC--CCCe-------
Q 017797 85 HRISAIRSRKGAIVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--DE--FQKR------- 153 (365)
Q Consensus 85 ~rv~~~~~~~~~i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~--~~--~~~~------- 153 (365)
++-+.+.. +++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++. |. ..+.
T Consensus 7 ~~~~~~l~----i~~l~~~~~~~~~--l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~ 80 (259)
T PRK14274 7 VMKQEVYQ----INGMNLWYGQHHA--LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSN 80 (259)
T ss_pred hcCCceEE----EeeEEEEECCeee--EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEE
Confidence 44444555 7899999986655 999999999999999999999999999999999986 21 1122
Q ss_pred --------------EEEEcCCCcccCC------------CCC-chh----hh-------hh--------hhhccCCCcch
Q 017797 154 --------------VVIVDTSNEIGGD------------GDI-PHS----AI-------GT--------ARRMQVPEPSL 187 (365)
Q Consensus 154 --------------i~~i~~~~ei~~~------------~~~-~~~----~~-------~~--------~~~~~~~S~g~ 187 (365)
+.++++...+... ... ... .+ +. ......+|+||
T Consensus 81 ~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq 160 (259)
T PRK14274 81 ILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQ 160 (259)
T ss_pred ccccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHH
Confidence 3444433221110 000 000 00 00 01233479999
Q ss_pred hHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecC
Q 017797 188 QHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (365)
Q Consensus 188 ~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~ 260 (365)
+||++++++++.+|+++++||||+++|. +.+.++.+ +.|+|+++|+.+.+..+||+++ ++++|+++..|+
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~--~l~~G~i~~~g~ 237 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTA--FFYMGELVECND 237 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEE--EEECCEEEEECC
Confidence 9999999999999999999999999995 34444443 7899999999999989999999 999999999999
Q ss_pred HHHHHHh
Q 017797 261 EEARARR 267 (365)
Q Consensus 261 ~~~~~~~ 267 (365)
+++++..
T Consensus 238 ~~~~~~~ 244 (259)
T PRK14274 238 TNKMFSN 244 (259)
T ss_pred HHHHhhC
Confidence 9988653
No 176
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.3e-26 Score=211.30 Aligned_cols=166 Identities=13% Similarity=0.145 Sum_probs=125.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhc---ccc--CCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV---LSD--EFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gl---l~~--~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+ +++ +.|
T Consensus 6 ~~~~~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14245 6 ARDVNFWYGDFHA--LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELR 83 (250)
T ss_pred EEEEEEEECCEeE--EeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHh
Confidence 6789999987655 9999999999999999999999999999999997 333 111
Q ss_pred CeEEEEcCCCcccCC------------CCCc-hh----hhh-hh--------------hhccCCCcchhHHHHHHHHHhh
Q 017797 152 KRVVIVDTSNEIGGD------------GDIP-HS----AIG-TA--------------RRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~~-~~----~~~-~~--------------~~~~~~S~g~~~r~~la~al~~ 199 (365)
..+.|+.+...+... .... .. .+. .. .....+|+||+||++++++++.
T Consensus 84 ~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 163 (250)
T PRK14245 84 KNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV 163 (250)
T ss_pred hheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence 124444443222110 0000 00 000 00 1234579999999999999999
Q ss_pred CCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 200 MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|++||+|||++++|. +.+.++. +|.|||+++|+.+.+..+||+++ ++++|+++..|+++++...
T Consensus 164 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~--~l~~G~~~~~~~~~~~~~~ 235 (250)
T PRK14245 164 SPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTA--FFYMGEMVEYDDTKKIFTN 235 (250)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEE--EEECCEEEEECCHHHHhcC
Confidence 9999999999999995 3444553 47999999999999989999999 9999999999999988753
No 177
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.9e-26 Score=216.10 Aligned_cols=168 Identities=17% Similarity=0.217 Sum_probs=127.3
Q ss_pred eeeEEEEECCc----ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------e
Q 017797 97 IVGLTCRVGRA----VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------R 153 (365)
Q Consensus 97 i~~l~~r~~~~----~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------------------~ 153 (365)
+++++++|... ....++++++.+.+|++++|+||||||||||+++|+|+++|+.|. +
T Consensus 7 ~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~ 86 (280)
T PRK13633 7 CKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNK 86 (280)
T ss_pred EeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhh
Confidence 67999999642 112499999999999999999999999999999999999887431 2
Q ss_pred EEEEcCCCc--ccCC------------CCCchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEE
Q 017797 154 VVIVDTSNE--IGGD------------GDIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (365)
Q Consensus 154 i~~i~~~~e--i~~~------------~~~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vl 204 (365)
+.++++... +... ..++... +.. .+....+|+||+||++++++++.+|++|
T Consensus 87 i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 166 (280)
T PRK13633 87 AGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECI 166 (280)
T ss_pred eEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 334433321 1000 0011000 000 0334567999999999999999999999
Q ss_pred EEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 205 IVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 205 ilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|+|||++++|. +.+.++.+ .|.|||+++|+++++.. ||+++ ++++|+++..|++++++..
T Consensus 167 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~--~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 167 IFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRII--VMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEE--EEECCEEEEecCHHHHhcC
Confidence 99999999995 34555554 49999999999998875 99999 9999999999999988753
No 178
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.9e-26 Score=210.53 Aligned_cols=166 Identities=15% Similarity=0.109 Sum_probs=126.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~-----~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+..| ..|
T Consensus 7 ~~~l~~~~~~~~~--l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (251)
T PRK14270 7 SKNLNLWYGEKQA--LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELR 84 (251)
T ss_pred EEEeEEEECCeee--eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHH
Confidence 6789999986555 9999999999999999999999999999999999864 221
Q ss_pred CeEEEEcCCCcccCC------------CCC-chhh----h-------h--------hhhhccCCCcchhHHHHHHHHHhh
Q 017797 152 KRVVIVDTSNEIGGD------------GDI-PHSA----I-------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~-~~~~----~-------~--------~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
..+.++++...+... ... .... + + .......+|+||+||++++++++.
T Consensus 85 ~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 164 (251)
T PRK14270 85 KRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAV 164 (251)
T ss_pred hheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 124444433221110 000 0000 0 0 012234679999999999999999
Q ss_pred CCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|++||+|||++++|.. .+.++.+ +.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 165 ~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14270 165 KPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTA--FFLMGDLIEFNKTEKIFLE 236 (251)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEE--EEECCeEEEeCCHHHHhcC
Confidence 99999999999999953 4444444 6899999999999889999999 9999999999999988654
No 179
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8.1e-26 Score=213.18 Aligned_cols=166 Identities=16% Similarity=0.137 Sum_probs=126.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~-----~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++| +.|
T Consensus 22 ~~nl~~~~~~~~i--l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~ 99 (267)
T PRK14235 22 ARDVSVFYGEKQA--LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELR 99 (267)
T ss_pred EEeEEEEECCEEE--EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHh
Confidence 6689999987655 9999999999999999999999999999999999864 322
Q ss_pred CeEEEEcCCCcccCC------------CCC--chhhh-----------hh--------hhhccCCCcchhHHHHHHHHHh
Q 017797 152 KRVVIVDTSNEIGGD------------GDI--PHSAI-----------GT--------ARRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~--~~~~~-----------~~--------~~~~~~~S~g~~~r~~la~al~ 198 (365)
..+.++.+...+... ... ..... +. .+....+|+|++||+++++|++
T Consensus 100 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 179 (267)
T PRK14235 100 ARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIA 179 (267)
T ss_pred hceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 123444333221110 000 00000 00 0123457999999999999999
Q ss_pred hCCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 199 HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 199 ~~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
.+|++||+|||++++|.. .+..+.+ +.|||+++|+.+.+..+||+++ ++++|+++..|++++++..
T Consensus 180 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14235 180 VSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTA--FFHLGNLVEVGDTEKMFTN 252 (267)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 999999999999999953 3444444 7899999999999999999999 9999999999999887653
No 180
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.93 E-value=5.2e-26 Score=210.63 Aligned_cols=166 Identities=16% Similarity=0.190 Sum_probs=124.5
Q ss_pred eeeEEEEECCcc-cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------eEEEE
Q 017797 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------~i~~i 157 (365)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+++|..|. .+.++
T Consensus 3 i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (238)
T cd03249 3 FKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLV 82 (238)
T ss_pred EEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEE
Confidence 578999996421 12489999999999999999999999999999999999877431 24444
Q ss_pred cCCCcccCC----------CCCchhhh-------hh---------------hhhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 158 DTSNEIGGD----------GDIPHSAI-------GT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 158 ~~~~ei~~~----------~~~~~~~~-------~~---------------~~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
++...+... ........ +. ......+|+|++||++++++++.+|++||
T Consensus 83 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 83 SQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred CCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 433221100 00000000 00 01124679999999999999999999999
Q ss_pred EcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 206 VDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 206 lDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+|||++++|.. .+..+. +|.+||+++|+.+++. .||+++ ++++|+++..|+.+++..
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d~v~--~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-NADLIA--VLQNGQVVEQGTHDELMA 226 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hCCEEE--EEECCEEEEeCCHHHHhh
Confidence 99999999953 344444 6899999999999887 799999 999999999988877654
No 181
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5.6e-26 Score=209.80 Aligned_cols=166 Identities=16% Similarity=0.168 Sum_probs=124.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------eEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------~i~~i~ 158 (365)
+++++++|+......++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.+++
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (234)
T cd03251 3 FKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVS 82 (234)
T ss_pred EEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeC
Confidence 57899999764212389999999999999999999999999999999999887431 233443
Q ss_pred CCCcccCC----------CCCchhhhhh----------------------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD----------GDIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------------------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+... .......... ......+|+|++||+++++|++.+|++||+
T Consensus 83 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllL 162 (234)
T cd03251 83 QDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILIL 162 (234)
T ss_pred CCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 33221100 0000000000 012346799999999999999999999999
Q ss_pred cCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|||++++|.. .+.++. +|.+||++||+.+++.. ||+++ ++++|+++..|+++++..
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~v~--~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 163 DEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIEN-ADRIV--VLEDGKIVERGTHEELLA 225 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhh-CCEEE--EecCCeEeeeCCHHHHHH
Confidence 9999999953 344443 48999999999998876 99999 999999999999887754
No 182
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=4.4e-26 Score=208.65 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=119.1
Q ss_pred CcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC---CC--cc----c----------CC----
Q 017797 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT---SN--EI----G----------GD---- 166 (365)
Q Consensus 110 ~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~---~~--ei----~----------~~---- 166 (365)
.++.++++.+++|++++++|||||||||+|++|.|++.|+. ++|-+..- .. ++ . ++
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~-G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS-GKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCC-CeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 46899999999999999999999999999999999999984 45543321 10 00 0 00
Q ss_pred ---------CCCchhhhh---------------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------
Q 017797 167 ---------GDIPHSAIG---------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA------- 215 (365)
Q Consensus 167 ---------~~~~~~~~~---------------~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~------- 215 (365)
..+|...+. ...++.-+|.|++.|..++++|+|+|+||+|||||-++|.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir 196 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence 011111110 0123455799999999999999999999999999999995
Q ss_pred HHHHHHH-HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 216 HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 216 ~~i~~~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+.+++.. +.+.||+.|||+++.+..+|++++ +++.|++++.|+.+++..
T Consensus 197 ~Flke~n~~~~aTVllTTH~~~di~~lc~rv~--~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 197 EFLKEYNEERQATVLLTTHIFDDIATLCDRVL--LIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred HHHHHHHHhhCceEEEEecchhhHHHhhhheE--EeeCCcEeecccHHHHHH
Confidence 2344443 458999999999999999999999 999999999998887654
No 183
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=6.6e-26 Score=209.07 Aligned_cols=169 Identities=16% Similarity=0.160 Sum_probs=133.0
Q ss_pred eeeEEEEECCc-------ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc-ccC---
Q 017797 97 IVGLTCRVGRA-------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-IGG--- 165 (365)
Q Consensus 97 i~~l~~r~~~~-------~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~e-i~~--- 165 (365)
++++++.|... ...++++|+|.+.+|+.++|+|.+||||||+-|+|+|++.|+ .+.|.+-..... +..
T Consensus 7 v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~~~~~ 85 (268)
T COG4608 7 VKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLSKEER 85 (268)
T ss_pred EeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcchhHH
Confidence 45667666432 135699999999999999999999999999999999999998 456665433210 000
Q ss_pred ---------CCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHH-cCcEE
Q 017797 166 ---------DGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVML 228 (365)
Q Consensus 166 ---------~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~-~G~tV 228 (365)
.-+.+... ..+....+||||+||+++||||+.+|++|++|||++.+|. +++..+.+ .|.+.
T Consensus 86 ~~~v~elL~~Vgl~~~~--~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~ 163 (268)
T COG4608 86 RERVLELLEKVGLPEEF--LYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTY 163 (268)
T ss_pred HHHHHHHHHHhCCCHHH--hhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeE
Confidence 00011111 1244567899999999999999999999999999999995 45666654 49999
Q ss_pred EEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchH
Q 017797 229 IGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQK 270 (365)
Q Consensus 229 i~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~ 270 (365)
++++||.+.+..+||++. +|..|++|..|+.++++..+..
T Consensus 164 lFIsHDL~vv~~isdri~--VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 164 LFISHDLSVVRYISDRIA--VMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred EEEEEEHHhhhhhcccEE--EEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999 9999999999999999987543
No 184
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5.8e-26 Score=209.01 Aligned_cols=164 Identities=14% Similarity=0.153 Sum_probs=123.9
Q ss_pred eeeEEEEECC-cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEE
Q 017797 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i 157 (365)
+++++++|+. ..+ ++++++.+.+|++++|+||||||||||+++|+|+++|..| ..+.|+
T Consensus 5 ~~~l~~~~~~~~~~--l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (229)
T cd03254 5 FENVNFSYDEKKPV--LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82 (229)
T ss_pred EEEEEEecCCCCcc--ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence 6789999974 334 9999999999999999999999999999999999987643 124444
Q ss_pred cCCCcccCC----------CCCchhhhh-------h---h------------hhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 158 DTSNEIGGD----------GDIPHSAIG-------T---A------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 158 ~~~~ei~~~----------~~~~~~~~~-------~---~------------~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
++...+... .......+. . . .....+|+||+||++++++++.+|++||
T Consensus 83 ~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~lll 162 (229)
T cd03254 83 LQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILI 162 (229)
T ss_pred cCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 443222110 000000000 0 0 1235689999999999999999999999
Q ss_pred EcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 206 VDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 206 lDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+|||++++|.. .+..+. +|.|||++||+.++.. .||+++ ++++|+++..|+.+++..
T Consensus 163 lDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~~d~i~--~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 163 LDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIK-NADKIL--VLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHh-hCCEEE--EEeCCeEEEeCCHHHHHh
Confidence 99999999953 344443 5899999999999886 499999 999999999888877654
No 185
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.6e-26 Score=210.43 Aligned_cols=166 Identities=16% Similarity=0.146 Sum_probs=125.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~-----~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++++ +.|
T Consensus 6 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14240 6 VKDLDLFYGDFQA--LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLR 83 (250)
T ss_pred EEEEEEEECCcee--eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHh
Confidence 6799999986555 9999999999999999999999999999999998752 211
Q ss_pred CeEEEEcCCCcccCC------------CCC-chhhhh--------h-----------hhhccCCCcchhHHHHHHHHHhh
Q 017797 152 KRVVIVDTSNEIGGD------------GDI-PHSAIG--------T-----------ARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~-~~~~~~--------~-----------~~~~~~~S~g~~~r~~la~al~~ 199 (365)
..+.++.+...+... ... +..... . .+....+|+||+||+++++++..
T Consensus 84 ~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 163 (250)
T PRK14240 84 KRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV 163 (250)
T ss_pred ccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc
Confidence 124444443221110 000 000000 0 12234579999999999999999
Q ss_pred CCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|++|++|||++++|.. .+.++. +|.|||++||+.+.+..+||+++ ++++|+++..|+++++...
T Consensus 164 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~~~ 235 (250)
T PRK14240 164 EPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQQASRISDKTA--FFLNGEIVEFGDTVDLFTN 235 (250)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHHhhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 99999999999999953 344443 47899999999999989999999 9999999999998887643
No 186
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=210.22 Aligned_cols=166 Identities=15% Similarity=0.138 Sum_probs=126.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc--cC---CC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--DE---FQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~--~~---~~-------------------- 151 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+.. |+ .|
T Consensus 8 ~~~l~~~~~~~~~--l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 85 (252)
T PRK14239 8 VSDLSVYYNKKKA--LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLR 85 (252)
T ss_pred EEeeEEEECCeee--eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhh
Confidence 6799999986555 999999999999999999999999999999999853 42 11
Q ss_pred CeEEEEcCCCcccCC------------CCCc-hhhh-----------h--------hhhhccCCCcchhHHHHHHHHHhh
Q 017797 152 KRVVIVDTSNEIGGD------------GDIP-HSAI-----------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~~-~~~~-----------~--------~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
..+.++++...+... .... .... + ..+....+|+|++||+++|+|++.
T Consensus 86 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 165 (252)
T PRK14239 86 KEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLAT 165 (252)
T ss_pred hcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhc
Confidence 124455443322110 0000 0000 0 002234579999999999999999
Q ss_pred CCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 200 MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|++||+|||++++|. +.+.++. ++.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 166 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 237 (252)
T PRK14239 166 SPKIILLDEPTSALDPISAGKIEETLLGLK-DDYTMLLVTRSMQQASRISDRTG--FFLDGDLIEYNDTKQMFMN 237 (252)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHHHHh-hCCeEEEEECCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 9999999999999995 3344443 36899999999999889999999 9999999999999888654
No 187
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.9e-26 Score=201.30 Aligned_cols=152 Identities=16% Similarity=0.244 Sum_probs=110.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-ccc------CCCCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIG------GDGDI 169 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~-ei~------~~~~~ 169 (365)
+++++++|+......++++++.+++|++++|+||||||||||+++|+|+++|.. +.+.+-.... .+. ....+
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (171)
T cd03228 3 FKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS-GEILIDGVDLRDLDLESLRKNIAYV 81 (171)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC-CEEEECCEEhhhcCHHHHHhhEEEE
Confidence 568999997651123999999999999999999999999999999999998874 4444322111 000 00001
Q ss_pred chhh-hhhhh-hccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHH
Q 017797 170 PHSA-IGTAR-RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENI 240 (365)
Q Consensus 170 ~~~~-~~~~~-~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~ 240 (365)
++.. +.... .-.++|+|++||++++++++.+|++|++|||++++|.. .+.++. ++.++|+++|+.+++..
T Consensus 82 ~~~~~~~~~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 82 PQDPFLFSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLSTIRD 160 (171)
T ss_pred cCCchhccchHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHh
Confidence 1110 00000 01128999999999999999999999999999999953 333443 47999999999998877
Q ss_pred hhhHHHHHHHcCc
Q 017797 241 IKNPILSDLIGGV 253 (365)
Q Consensus 241 ~~d~i~~~ll~~g 253 (365)
||+++ ++++|
T Consensus 161 -~d~~~--~l~~g 170 (171)
T cd03228 161 -ADRII--VLDDG 170 (171)
T ss_pred -CCEEE--EEcCC
Confidence 99988 77665
No 188
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.3e-26 Score=213.01 Aligned_cols=166 Identities=15% Similarity=0.165 Sum_probs=125.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~-----~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|++++ +.|
T Consensus 16 i~nl~~~~~~~~i--l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~ 93 (269)
T PRK14259 16 LQNVTISYGTFEA--VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVR 93 (269)
T ss_pred EEeEEEEECCEEE--EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHh
Confidence 6789999987655 9999999999999999999999999999999999762 321
Q ss_pred CeEEEEcCCCcccCC------------CCCch---hhhh-h--------------hhhccCCCcchhHHHHHHHHHhhCC
Q 017797 152 KRVVIVDTSNEIGGD------------GDIPH---SAIG-T--------------ARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~~~---~~~~-~--------------~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
.++.++.+...+... ..... .... . ......+|+||+||+++++|++.+|
T Consensus 94 ~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 173 (269)
T PRK14259 94 RRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEP 173 (269)
T ss_pred hceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCC
Confidence 124444443221110 00100 0000 0 0123457999999999999999999
Q ss_pred CEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcC-----------cEEEEecCHHH
Q 017797 202 EVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGG-----------VDTVTLGDEEA 263 (365)
Q Consensus 202 ~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~-----------g~iv~~g~~~~ 263 (365)
++||+|||++++|.. .+.+++ .+.|||++||+.+++..+||+++ ++++ |+++..|++++
T Consensus 174 ~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~i~--~l~~~~~~~~~~g~~g~~~~~~~~~~ 250 (269)
T PRK14259 174 EVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQQAVRVSDMTA--FFNAEEVEGGSGGKVGYLVEFNETKK 250 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEE--EEeccccccccccccceEEEeCCHHH
Confidence 999999999999953 344443 47899999999999999999999 8874 67899999999
Q ss_pred HHHh
Q 017797 264 RARR 267 (365)
Q Consensus 264 ~~~~ 267 (365)
++..
T Consensus 251 ~~~~ 254 (269)
T PRK14259 251 IFNS 254 (269)
T ss_pred HHhC
Confidence 8754
No 189
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=211.19 Aligned_cols=167 Identities=13% Similarity=0.118 Sum_probs=128.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----C-------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----K------------------- 152 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----~------------------- 152 (365)
+++++++|++... ++++++.+.+|++++|+||||||||||+++|+|++.|+.| +
T Consensus 13 ~~~~~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~ 90 (257)
T PRK14246 13 ISRLYLYINDKAI--LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRK 90 (257)
T ss_pred eeeEEEecCCcee--EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhc
Confidence 6799999988776 9999999999999999999999999999999999987642 1
Q ss_pred eEEEEcCCCcccCC-------------CCC-chhhh-----------hh--------hhhccCCCcchhHHHHHHHHHhh
Q 017797 153 RVVIVDTSNEIGGD-------------GDI-PHSAI-----------GT--------ARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 153 ~i~~i~~~~ei~~~-------------~~~-~~~~~-----------~~--------~~~~~~~S~g~~~r~~la~al~~ 199 (365)
.+.++++...+... ... +.... +. ......+|+|++||+++++++..
T Consensus 91 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~ 170 (257)
T PRK14246 91 EVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALAL 170 (257)
T ss_pred ceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHc
Confidence 23344333222110 000 11000 00 01223469999999999999999
Q ss_pred CCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhc
Q 017797 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~ 268 (365)
+|+++++||||+++|.. .+.++. ++.|||+++|+.+.+..+||+++ ++++|+++..|+++++...+
T Consensus 171 ~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiilvsh~~~~~~~~~d~v~--~l~~g~i~~~g~~~~~~~~~ 243 (257)
T PRK14246 171 KPKVLLMDEPTSMIDIVNSQAIEKLITELK-NEIAIVIVSHNPQQVARVADYVA--FLYNGELVEWGSSNEIFTSP 243 (257)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCcEEEEEECCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhCC
Confidence 99999999999999963 344443 46899999999999989999999 99999999999999887643
No 190
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=209.98 Aligned_cols=165 Identities=16% Similarity=0.158 Sum_probs=125.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~-----~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|++.+ +.|
T Consensus 6 ~~~l~~~~~~~~~--l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~ 83 (250)
T PRK14262 6 IENFSAYYGEKKA--VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYR 83 (250)
T ss_pred EEeeEEEeCCcee--EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhh
Confidence 6799999986555 9999999999999999999999999999999999863 321
Q ss_pred CeEEEEcCCCcccCC------------CCC-chhh----h-------h--------hhhhccCCCcchhHHHHHHHHHhh
Q 017797 152 KRVVIVDTSNEIGGD------------GDI-PHSA----I-------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~-~~~~----~-------~--------~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
..+.++.+...+... ... +... + + ..+....+|+||+||+++++|++.
T Consensus 84 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~ 163 (250)
T PRK14262 84 KKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAV 163 (250)
T ss_pred hhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhC
Confidence 124444433221110 000 0000 0 0 011234579999999999999999
Q ss_pred CCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+|++|++|||++++|.. .+.++. ++.|||++||+.+.+..+||+++ ++++|+++..|+++++..
T Consensus 164 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tili~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 164 EPEVILLDEPTSALDPIATQRIEKLLEELS-ENYTIVIVTHNIGQAIRIADYIA--FMYRGELIEYGPTREIVE 234 (250)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHhCCEEE--EEECCEEEEecCHHHHHh
Confidence 99999999999999953 344444 37899999999998888999999 999999999999988764
No 191
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1e-25 Score=209.86 Aligned_cols=166 Identities=13% Similarity=0.140 Sum_probs=126.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc---cCCC------------------CeEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS---DEFQ------------------KRVV 155 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~---~~~~------------------~~i~ 155 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++. |+.| ..+.
T Consensus 5 ~~~l~~~~~~~~~--l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 82 (246)
T PRK14269 5 TTNLNLFYGKKQA--LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVG 82 (246)
T ss_pred eeeeEEEECCEee--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEE
Confidence 6789999986555 999999999999999999999999999999999974 3322 1345
Q ss_pred EEcCCCcccCC------------CCC--chh----hhh-hh--------------hhccCCCcchhHHHHHHHHHhhCCC
Q 017797 156 IVDTSNEIGGD------------GDI--PHS----AIG-TA--------------RRMQVPEPSLQHKVMIEAVENHMPE 202 (365)
Q Consensus 156 ~i~~~~ei~~~------------~~~--~~~----~~~-~~--------------~~~~~~S~g~~~r~~la~al~~~P~ 202 (365)
|+++...+... ... +.. .+. .. +....+|+|++||+++|+|++.+|+
T Consensus 83 ~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 162 (246)
T PRK14269 83 MVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPK 162 (246)
T ss_pred EEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 55544322110 000 000 000 00 1233479999999999999999999
Q ss_pred EEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 203 VIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 203 vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|++|||++++|.. .+.++. .|.|||++||+.+++..+||+++ ++++|+++..|+++++...
T Consensus 163 lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 163 LLLLDEPTSALDPISSGVIEELLKELS-HNLSMIMVTHNMQQGKRVADYTA--FFHLGELIEFGESKEFFEN 231 (246)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhCcEEE--EEECCEEEEECCHHHHHhC
Confidence 99999999999953 344443 48999999999999989999999 9999999999999887653
No 192
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4e-26 Score=233.84 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=129.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------CeEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------------~~i~~i 157 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|++.|+.| .++.++
T Consensus 8 ~~~l~~~~~~~~i--l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v 85 (510)
T PRK09700 8 MAGIGKSFGPVHA--LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGII 85 (510)
T ss_pred EeeeEEEcCCeEE--eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEE
Confidence 6799999987655 9999999999999999999999999999999999987632 124555
Q ss_pred cCCCcccCC---------C--------CC---chhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCC
Q 017797 158 DTSNEIGGD---------G--------DI---PHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPE 202 (365)
Q Consensus 158 ~~~~ei~~~---------~--------~~---~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~ 202 (365)
.+...+... . .. .... +. . .+....+|+||+||+++|+|++.+|+
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ 165 (510)
T PRK09700 86 YQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAK 165 (510)
T ss_pred eecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence 443221110 0 00 0000 00 0 12345679999999999999999999
Q ss_pred EEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHH
Q 017797 203 VIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (365)
Q Consensus 203 vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~ 265 (365)
+||+||||+++|. +.+.+++++|.|||++||+.+++..+||+++ ++++|+++..|+++++.
T Consensus 166 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 166 VIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYT--VMKDGSSVCSGMVSDVS 233 (510)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEeeecchhhCC
Confidence 9999999999995 3456666779999999999999999999999 99999999999988754
No 193
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.93 E-value=7.4e-26 Score=200.52 Aligned_cols=146 Identities=18% Similarity=0.124 Sum_probs=113.1
Q ss_pred eEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhh
Q 017797 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTAR 178 (365)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~ 178 (365)
+++++|+...+ ++++ +.+++|++++|+||||||||||+++|+|+++|+. +.|.+-.. .+.+ .++.
T Consensus 5 ~l~~~~~~~~~--l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~--~i~~---~~q~------ 69 (177)
T cd03222 5 DCVKRYGVFFL--LVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG-DNDEWDGI--TPVY---KPQY------ 69 (177)
T ss_pred CeEEEECCEEE--EccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC-cEEEECCE--EEEE---Eccc------
Confidence 79999988765 6664 7889999999999999999999999999999874 45543221 1111 1111
Q ss_pred hccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcC-cEEEEEEcCcchhHHhhhHHHHHHH
Q 017797 179 RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERG-VMLIGTAHGEWLENIIKNPILSDLI 250 (365)
Q Consensus 179 ~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G-~tVi~t~H~~~~~~~~~d~i~~~ll 250 (365)
..+|+||+||++++++++.+|+++++|||++++|. +.+.++++++ .+||+++|+.+++..+||+++ ++
T Consensus 70 --~~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~--~l 145 (177)
T cd03222 70 --IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIH--VF 145 (177)
T ss_pred --CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEE--EE
Confidence 11899999999999999999999999999999995 3455555564 999999999999998999998 77
Q ss_pred cCcEEEEe--cCHHH
Q 017797 251 GGVDTVTL--GDEEA 263 (365)
Q Consensus 251 ~~g~iv~~--g~~~~ 263 (365)
+++-.+.. |.|..
T Consensus 146 ~~~~~~~~~~~~~~~ 160 (177)
T cd03222 146 EGEPGVYGIASQPKG 160 (177)
T ss_pred cCCCccceeccCCcc
Confidence 76544422 55543
No 194
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.93 E-value=3.9e-26 Score=233.43 Aligned_cols=164 Identities=15% Similarity=0.147 Sum_probs=127.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------CeEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------------~~i~~i 157 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.++
T Consensus 7 ~~~l~~~~~~~~~--l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 84 (501)
T PRK10762 7 LKGIDKAFPGVKA--LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGII 84 (501)
T ss_pred EeeeEEEeCCeEE--eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 7799999987655 9999999999999999999999999999999999988632 124444
Q ss_pred cCCCcccCC---------C--------CCchh----hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 158 DTSNEIGGD---------G--------DIPHS----AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 158 ~~~~ei~~~---------~--------~~~~~----~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
.+...+... . .+... .+.. .+....+|+||+||+++|+||+.+|++||
T Consensus 85 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 164 (501)
T PRK10762 85 HQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVII 164 (501)
T ss_pred EcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 443211100 0 00000 0000 02345679999999999999999999999
Q ss_pred EcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 206 VDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 206 lDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
+||||+++|. +.+.++.+.|.|||++||+.+++..+||+++ ++++|+++..|+++++
T Consensus 165 LDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~--~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 165 MDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVT--VFRDGQFIAEREVADL 228 (501)
T ss_pred EeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEeCCEEEEecCcCcC
Confidence 9999999995 3455666679999999999999999999999 9999999999887765
No 195
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.9e-26 Score=233.68 Aligned_cols=164 Identities=18% Similarity=0.196 Sum_probs=128.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc--CCC-------------------CeEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD--EFQ-------------------KRVV 155 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~--~~~-------------------~~i~ 155 (365)
+++++++|++..+ ++++++.+++|++++|+||||||||||+|+|+|+++| +.| ..+.
T Consensus 8 ~~nl~~~~~~~~i--l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (506)
T PRK13549 8 MKNITKTFGGVKA--LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIA 85 (506)
T ss_pred EeeeEEEeCCeEe--ecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeE
Confidence 6799999987655 9999999999999999999999999999999999986 321 1245
Q ss_pred EEcCCCcccCC---------C------C-Cchh----hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEE
Q 017797 156 IVDTSNEIGGD---------G------D-IPHS----AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (365)
Q Consensus 156 ~i~~~~ei~~~---------~------~-~~~~----~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vl 204 (365)
++.+...+... . . .... .+.. .+....+|+||+||+++|+|++.+|++|
T Consensus 86 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll 165 (506)
T PRK13549 86 IIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLL 165 (506)
T ss_pred EEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 55443222110 0 0 0100 0000 1234567999999999999999999999
Q ss_pred EEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 205 IVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 205 ilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
|+||||+++|. +.+.+++++|.|||++||+.+++..+||+++ ++++|+++..|+++++
T Consensus 166 lLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 166 ILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTIC--VIRDGRHIGTRPAAGM 230 (506)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEE--EEECCEEeeecccccC
Confidence 99999999995 4555666679999999999999999999999 9999999999988765
No 196
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.4e-25 Score=210.32 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=124.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC----CCCe-------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKR------------------- 153 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~----~~~~------------------- 153 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++.|. ..+.
T Consensus 7 i~~v~~~~~~~~~--l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~ 84 (258)
T PRK14241 7 VKDLNIYYGSFHA--VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVR 84 (258)
T ss_pred EeeEEEEECCEee--eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHh
Confidence 6799999987655 99999999999999999999999999999999998641 1222
Q ss_pred --EEEEcCCCcccCC-------------CCC-chhh----hhh---------------hhhccCCCcchhHHHHHHHHHh
Q 017797 154 --VVIVDTSNEIGGD-------------GDI-PHSA----IGT---------------ARRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 154 --i~~i~~~~ei~~~-------------~~~-~~~~----~~~---------------~~~~~~~S~g~~~r~~la~al~ 198 (365)
+.++.+...+... ... +... +.. ......+|+|++||+++++|+.
T Consensus 85 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (258)
T PRK14241 85 RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIA 164 (258)
T ss_pred cceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 3333332211110 000 0000 000 0123457999999999999999
Q ss_pred hCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHc------CcEEEEecCHHHHH
Q 017797 199 HMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIG------GVDTVTLGDEEARA 265 (365)
Q Consensus 199 ~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~------~g~iv~~g~~~~~~ 265 (365)
.+|++||+|||++++|. +.+.+++ ++.|||+++|+.+++..+||+++ ++. +|+++..|++++++
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~~~~~~~d~i~--~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 165 VEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQAARVSDQTA--FFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEE--EEecccCCCCceEEecCCHHHHH
Confidence 99999999999999995 3344443 46899999999999989999998 775 79999999998876
Q ss_pred Hh
Q 017797 266 RR 267 (365)
Q Consensus 266 ~~ 267 (365)
..
T Consensus 242 ~~ 243 (258)
T PRK14241 242 SN 243 (258)
T ss_pred hC
Confidence 53
No 197
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1e-25 Score=213.22 Aligned_cols=166 Identities=16% Similarity=0.158 Sum_probs=126.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~-----~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++.+ ..|
T Consensus 23 ~~nl~~~~~~~~~--l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~ 100 (274)
T PRK14265 23 VEGVKVFYGGFLA--LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100 (274)
T ss_pred EeeEEEEeCCeEE--EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHh
Confidence 6689999987655 9999999999999999999999999999999999753 111
Q ss_pred CeEEEEcCCCcccCC------------CCCch---hhh-------hh--------hhhccCCCcchhHHHHHHHHHhhCC
Q 017797 152 KRVVIVDTSNEIGGD------------GDIPH---SAI-------GT--------ARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~~~---~~~-------~~--------~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
.++.|+++...+... ..... ... +. ......+|+|++||+++|+|++.+|
T Consensus 101 ~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p 180 (274)
T PRK14265 101 RQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKP 180 (274)
T ss_pred hcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCC
Confidence 134455443322110 00000 000 00 0223457999999999999999999
Q ss_pred CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHc---------CcEEEEecCHHHHH
Q 017797 202 EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIG---------GVDTVTLGDEEARA 265 (365)
Q Consensus 202 ~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~---------~g~iv~~g~~~~~~ 265 (365)
++||+|||++++|. +.+.++. ++.|||+++|+.+++..+||+++ +++ .|+++..|++++++
T Consensus 181 ~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~--~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 181 DVLLMDEPCSALDPISTRQVEELCLELK-EQYTIIMVTHNMQQASRVADWTA--FFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE--EEecccccccccCceEEEeCCHHHHH
Confidence 99999999999995 3444444 37899999999999999999999 886 79999999999987
Q ss_pred Hh
Q 017797 266 RR 267 (365)
Q Consensus 266 ~~ 267 (365)
..
T Consensus 258 ~~ 259 (274)
T PRK14265 258 GS 259 (274)
T ss_pred hC
Confidence 54
No 198
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=9.8e-26 Score=213.14 Aligned_cols=166 Identities=16% Similarity=0.188 Sum_probs=126.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC-------CCe----------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-------QKR---------------- 153 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~-------~~~---------------- 153 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+. .+.
T Consensus 4 ~~nl~~~~~~~~i--l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (272)
T PRK13547 4 ADHLHVARRHRAI--LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRL 81 (272)
T ss_pred EEEEEEEECCEeE--EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHH
Confidence 6789999987665 999999999999999999999999999999999998751 122
Q ss_pred ---EEEEcCCCcccCC---------CCCch---------h---hhhh-----------hhhccCCCcchhHHHHHHHHHh
Q 017797 154 ---VVIVDTSNEIGGD---------GDIPH---------S---AIGT-----------ARRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 154 ---i~~i~~~~ei~~~---------~~~~~---------~---~~~~-----------~~~~~~~S~g~~~r~~la~al~ 198 (365)
+.++++.....+. ...+. . .... .+....+|+|++||++++++++
T Consensus 82 ~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 161 (272)
T PRK13547 82 ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLA 161 (272)
T ss_pred HhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 2334333211100 00000 0 0000 0234457999999999999999
Q ss_pred ---------hCCCEEEEcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCH
Q 017797 199 ---------HMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 261 (365)
Q Consensus 199 ---------~~P~vlilDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~ 261 (365)
.+|++||+|||++++|. +.+.++.++ |.|||+++|+.+++..+||+++ ++++|+++..|++
T Consensus 162 ~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~--~l~~G~i~~~g~~ 239 (272)
T PRK13547 162 QLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIA--MLADGAIVAHGAP 239 (272)
T ss_pred ccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE--EEECCeEEEecCH
Confidence 49999999999999995 345555555 8999999999999988999999 9999999999998
Q ss_pred HHHHH
Q 017797 262 EARAR 266 (365)
Q Consensus 262 ~~~~~ 266 (365)
+++..
T Consensus 240 ~~~~~ 244 (272)
T PRK13547 240 ADVLT 244 (272)
T ss_pred HHHcC
Confidence 87754
No 199
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=9.7e-26 Score=213.09 Aligned_cols=167 Identities=16% Similarity=0.231 Sum_probs=125.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+......++++++.+.+|++++|+||||||||||+++|+|+++|+.| .++.|+.
T Consensus 10 ~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~ 89 (271)
T PRK13632 10 VENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIF 89 (271)
T ss_pred EEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEE
Confidence 6789999953211249999999999999999999999999999999999987632 1244444
Q ss_pred CCCc--ccCC------------CCCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCC
Q 017797 159 TSNE--IGGD------------GDIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (365)
Q Consensus 159 ~~~e--i~~~------------~~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp 209 (365)
+... +... ....... +. . .+....+|+||+||+++++|++.+|++|++|||
T Consensus 90 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 169 (271)
T PRK13632 90 QNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDES 169 (271)
T ss_pred eCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4321 1100 0000000 00 0 023345799999999999999999999999999
Q ss_pred CcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 210 GTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 210 ~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++++|. +.+.++.++ |.|||+++|+.+.+. .||+++ ++++|+++..|+++++..
T Consensus 170 ~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~--~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 170 TSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVI--VFSEGKLIAQGKPKEILN 231 (271)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEE--EEECCEEEEecCHHHHhc
Confidence 999995 345555555 589999999999886 799999 999999999999888764
No 200
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.93 E-value=1.1e-25 Score=212.43 Aligned_cols=166 Identities=14% Similarity=0.214 Sum_probs=126.5
Q ss_pred eeeEEEEECC---------cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------
Q 017797 97 IVGLTCRVGR---------AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------- 152 (365)
Q Consensus 97 i~~l~~r~~~---------~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~--------------- 152 (365)
+++++++|+. .. .++++++.+.+|++++|+||||||||||+++|+|++.|+.|.
T Consensus 6 ~~nl~~~~~~~~~~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 6 VSGLSHHYAHGGLSGKHQHQT--VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EeceEEEecCCccccccCcee--eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 6789999973 33 499999999999999999999999999999999999876431
Q ss_pred ------eEEEEcCCCc--ccCCCCC--------------chh----hhh-h-----------hhhccCCCcchhHHHHHH
Q 017797 153 ------RVVIVDTSNE--IGGDGDI--------------PHS----AIG-T-----------ARRMQVPEPSLQHKVMIE 194 (365)
Q Consensus 153 ------~i~~i~~~~e--i~~~~~~--------------~~~----~~~-~-----------~~~~~~~S~g~~~r~~la 194 (365)
.+.++.+... +.....+ ... .+. . ......+|+|++||++++
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~la 163 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLA 163 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHH
Confidence 2334433321 1100000 000 000 0 022345799999999999
Q ss_pred HHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 195 AVENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 195 ~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+|++.+|++||+|||++++|. +.+..+.++ |.|+|++||+.+.+..+||+++ ++++|+++..|+++++++
T Consensus 164 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~--~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 164 RALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVM--VMDNGQIVETQPVGDKLT 241 (268)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEE--EEECCEEeeeCChhhccC
Confidence 999999999999999999996 345555554 8999999999999999999999 999999999999888753
No 201
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.6e-25 Score=211.63 Aligned_cols=166 Identities=14% Similarity=0.137 Sum_probs=126.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc-----cCCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~-----~~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++. |+.|
T Consensus 27 ~~~l~~~~~~~~i--l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 104 (271)
T PRK14238 27 TQNLNLWYGEDHA--LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR 104 (271)
T ss_pred EeeeEEEECCcce--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHh
Confidence 6789999986555 999999999999999999999999999999999986 3422
Q ss_pred CeEEEEcCCCcccCC------------CCC-chhh----hhh---------------hhhccCCCcchhHHHHHHHHHhh
Q 017797 152 KRVVIVDTSNEIGGD------------GDI-PHSA----IGT---------------ARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~-~~~~----~~~---------------~~~~~~~S~g~~~r~~la~al~~ 199 (365)
..+.|+++...+... ... .... +.. ......+|+|++||++++++++.
T Consensus 105 ~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~ 184 (271)
T PRK14238 105 TNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAI 184 (271)
T ss_pred hhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHc
Confidence 124444443222110 000 0000 000 01234579999999999999999
Q ss_pred CCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 200 MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|++||+|||++++|. +.+.++.+ +.|||+++|+.+++..+||+++ ++++|+++..|+++++...
T Consensus 185 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 256 (271)
T PRK14238 185 EPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTA--FFLNGYVNEYDDTDKIFSN 256 (271)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHcC
Confidence 9999999999999995 34445544 7999999999999989999999 9999999999999887653
No 202
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.3e-25 Score=212.98 Aligned_cols=168 Identities=17% Similarity=0.242 Sum_probs=127.9
Q ss_pred eeeEEEEECCcc-cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------eEEEE
Q 017797 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------~i~~i 157 (365)
+++++++|+... ...++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .++++
T Consensus 7 ~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v 86 (277)
T PRK13642 7 VENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMV 86 (277)
T ss_pred EEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEE
Confidence 679999997421 23499999999999999999999999999999999999887431 23444
Q ss_pred cCCCc--ccCC------------CCCchhhh----hh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcC
Q 017797 158 DTSNE--IGGD------------GDIPHSAI----GT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (365)
Q Consensus 158 ~~~~e--i~~~------------~~~~~~~~----~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDE 208 (365)
.+... +... ........ .. .+....+|+||+||+++|+|++.+|++||+||
T Consensus 87 ~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDE 166 (277)
T PRK13642 87 FQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDE 166 (277)
T ss_pred EECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 44321 1100 00000000 00 02234579999999999999999999999999
Q ss_pred CCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 209 IGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 209 p~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|++++|. +.+..+.++ |.|||++||+.+++. .||+++ ++++|+++..|++++++..
T Consensus 167 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 167 STSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRIL--VMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEE--EEECCEEEEeCCHHHHhcC
Confidence 9999995 345555554 999999999999986 599999 9999999999999988753
No 203
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.93 E-value=1.2e-25 Score=229.15 Aligned_cols=165 Identities=17% Similarity=0.126 Sum_probs=128.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE-------------------E
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------V 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~-------------------i 157 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+|+|+|+++|+.| .|.+ +
T Consensus 6 ~~~l~~~~~~~~i--l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G-~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 6 ISQGTFRLSDTKT--LQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSG-ERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred EEeEEEEcCCeee--cccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCc-eEEECCcccccCCHHHHHHHhcee
Confidence 6799999987655 9999999999999999999999999999999999988743 3332 1
Q ss_pred cCCCcccC--------CCCCch---------hhhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCC
Q 017797 158 DTSNEIGG--------DGDIPH---------SAIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (365)
Q Consensus 158 ~~~~ei~~--------~~~~~~---------~~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp 209 (365)
.+...... ...+.. ..+.. .+....+|+||+||+++|+|++.+|++|++|||
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEP 162 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 11110000 000000 00000 133456799999999999999999999999999
Q ss_pred CcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 210 GTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 210 ~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|+++|+ +.+.+++++|.|||+++|+.+++..+||+++ ++++|+++..|+++++..
T Consensus 163 t~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 163 FDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAG--VLADCTLAETGEREEILQ 224 (490)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEE--EEECCEEEEeCCHHHHhc
Confidence 999995 4555666679999999999999999999999 999999999999887654
No 204
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.2e-25 Score=207.87 Aligned_cols=164 Identities=20% Similarity=0.215 Sum_probs=123.9
Q ss_pred eeeEEEEECC-cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------eEEEE
Q 017797 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------~i~~i 157 (365)
+++++++|.. ..+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.|+
T Consensus 3 ~~~l~~~~~~~~~~--l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 3 FENVTFAYDPGRPV--LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred EEEEEEEeCCCCce--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 5689999953 434 89999999999999999999999999999999999877431 13444
Q ss_pred cCCCcccCC----------CCCchhhh-------hh---------------hhhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 158 DTSNEIGGD----------GDIPHSAI-------GT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 158 ~~~~ei~~~----------~~~~~~~~-------~~---------------~~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
++...+... .......+ +. .++...+|+|++||+++++||+.+|++||
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~lll 160 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILL 160 (236)
T ss_pred CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 433222110 00000000 00 01234689999999999999999999999
Q ss_pred EcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 206 VDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 206 lDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+|||++++|.. .+..+.+ |.|||+++|+.++... ||+++ ++++|+++..|+++++..
T Consensus 161 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~~~--~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 161 LDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKII--VLKDGRIVERGTHEELLA 224 (236)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEEE--EEECCEEEeeCCHHHHhh
Confidence 99999999953 3444445 8999999999998865 99999 999999999988877654
No 205
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.93 E-value=1.6e-25 Score=196.63 Aligned_cols=148 Identities=17% Similarity=0.237 Sum_probs=111.6
Q ss_pred eeeEEEEECC-cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCcccCCCC
Q 017797 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGDGD 168 (365)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------~~i~~i~~~~ei~~~~~ 168 (365)
+++++++|.. ..+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.++++...+. ...
T Consensus 3 ~~~~~~~~~~~~~~--l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~-~~t 79 (166)
T cd03223 3 LENLSLATPDGRVL--LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP-LGT 79 (166)
T ss_pred EEEEEEEcCCCCee--eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccc-ccc
Confidence 5689999953 334 8999999999999999999999999999999999988744 2455555543321 111
Q ss_pred CchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHH----HHHHcCcEEEEEEcCcchhHHhhhH
Q 017797 169 IPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNP 244 (365)
Q Consensus 169 ~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~----~~~~~G~tVi~t~H~~~~~~~~~d~ 244 (365)
+.++... .....+|+|++||+++++|++.+|+++++|||++++|..... .+.+.+.|+|++||+.+.. .+||+
T Consensus 80 v~~nl~~--~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~-~~~d~ 156 (166)
T cd03223 80 LREQLIY--PWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW-KFHDR 156 (166)
T ss_pred HHHHhhc--cCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH-hhCCE
Confidence 1111110 035678999999999999999999999999999999964322 2233478999999999865 58988
Q ss_pred HHHHHHcC
Q 017797 245 ILSDLIGG 252 (365)
Q Consensus 245 i~~~ll~~ 252 (365)
++ ++++
T Consensus 157 i~--~l~~ 162 (166)
T cd03223 157 VL--DLDG 162 (166)
T ss_pred EE--EEcC
Confidence 87 5543
No 206
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=1.8e-25 Score=193.72 Aligned_cols=164 Identities=14% Similarity=0.157 Sum_probs=123.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc-----------------C
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------T 159 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~-----------------~ 159 (365)
++++.+.|+.... .++..++.|++++|+||+||||||||+.|+|+..|.. +.|.+.+ +
T Consensus 4 L~~V~~~y~~~~~----~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~-G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 4 LDDVRFSYGHLPM----RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPAS-GEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred ccceEEeeCcceE----EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCC-ceEEEcCeecCcCCcccCChhhhhh
Confidence 4567777765432 4556789999999999999999999999999999984 3343322 1
Q ss_pred CCcccCC---------CCCchhhhh-------------------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc
Q 017797 160 SNEIGGD---------GDIPHSAIG-------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 160 ~~ei~~~---------~~~~~~~~~-------------------~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~ 211 (365)
.+.+... +.-|..++. ..+....+|||++||+++||++..+-.|+++|||++
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFs 158 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFS 158 (231)
T ss_pred ccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchh
Confidence 1111100 001111100 013345679999999999999999999999999999
Q ss_pred HHHHH-------HHHHH-HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 212 EAEAH-------ACRSI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 212 ~~d~~-------~i~~~-~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
.+|+. ++.++ .+++.|++++||..+.+..++++++ ++++|++.+.|+.++.+..
T Consensus 159 ALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~--fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 159 ALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVV--FLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred hcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceE--EEeCCEEEeeccHHHHhcc
Confidence 99963 33444 4679999999999999999999999 9999999999999998864
No 207
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.4e-26 Score=230.84 Aligned_cols=163 Identities=12% Similarity=0.126 Sum_probs=127.8
Q ss_pred eeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------CeEEEEc
Q 017797 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIVD 158 (365)
Q Consensus 98 ~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------------~~i~~i~ 158 (365)
++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|++.|+.| ..+.+++
T Consensus 2 ~nl~~~~~~~~i--l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 2 SNISKSFPGVKA--LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CceEEEeCCEEe--eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 579999987655 9999999999999999999999999999999999987632 1245554
Q ss_pred CCCcccCC---------C-----C--Cchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 159 TSNEIGGD---------G-----D--IPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 159 ~~~ei~~~---------~-----~--~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
+...+... . . ..... +.. .+....+|+||+||+++|+|++.+|++||+|
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD 159 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 43322110 0 0 00000 000 1234557999999999999999999999999
Q ss_pred CCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 208 EIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 208 Ep~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
|||+++|. +.+.++++.|.|||++||+.+++..+||+++ ++++|+++..|+++++
T Consensus 160 EPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 160 EPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEIT--ILRDGQWIATQPLAGL 221 (491)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEeecChhhC
Confidence 99999995 3455666779999999999999999999999 9999999999988775
No 208
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.4e-25 Score=209.25 Aligned_cols=165 Identities=15% Similarity=0.113 Sum_probs=125.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC-----CC-------------------C
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-----FQ-------------------K 152 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~-----~~-------------------~ 152 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++++. .| .
T Consensus 6 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 83 (249)
T PRK14253 6 IENLDLFYGENQA--LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRI 83 (249)
T ss_pred EeccEEEECCeee--eecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHh
Confidence 6789999986555 99999999999999999999999999999999998752 11 1
Q ss_pred eEEEEcCCCcccCC------------CCCc-hhhh-----------hh--------hhhccCCCcchhHHHHHHHHHhhC
Q 017797 153 RVVIVDTSNEIGGD------------GDIP-HSAI-----------GT--------ARRMQVPEPSLQHKVMIEAVENHM 200 (365)
Q Consensus 153 ~i~~i~~~~ei~~~------------~~~~-~~~~-----------~~--------~~~~~~~S~g~~~r~~la~al~~~ 200 (365)
.+.|+.+...+... .... .... +. ......+|+|++||+++|+++..+
T Consensus 84 ~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 163 (249)
T PRK14253 84 KVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAME 163 (249)
T ss_pred heeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcC
Confidence 24444433221110 0000 0000 00 012335799999999999999999
Q ss_pred CCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 201 PEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 201 P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|++||+|||++++|. +.+.++.+ +.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 164 p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 164 PDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTA--FFLMGELVEHDDTQVIFS 233 (249)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHc
Confidence 999999999999995 34445544 6899999999999999999999 999999999998887654
No 209
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.2e-25 Score=208.15 Aligned_cols=166 Identities=15% Similarity=0.133 Sum_probs=125.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc--c---CCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--D---EFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~--~---~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++. | ..|
T Consensus 7 ~~~l~~~~~~~~~--l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~ 84 (251)
T PRK14251 7 AKDVHLSYGNYEA--LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELR 84 (251)
T ss_pred EEeeEEEECCeee--eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhh
Confidence 6799999987555 999999999999999999999999999999999986 2 211
Q ss_pred CeEEEEcCCCcccCC------------CCCc-hh----hh-------hh--------hhhccCCCcchhHHHHHHHHHhh
Q 017797 152 KRVVIVDTSNEIGGD------------GDIP-HS----AI-------GT--------ARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~~-~~----~~-------~~--------~~~~~~~S~g~~~r~~la~al~~ 199 (365)
..+.++.+...+... .... .. .+ +. .+....+|+||+||+++++|+..
T Consensus 85 ~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~ 164 (251)
T PRK14251 85 KEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAV 164 (251)
T ss_pred ccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhc
Confidence 123444333221110 0000 00 00 00 01234579999999999999999
Q ss_pred CCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|++||+|||++++|.. .+.++. ++.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 165 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14251 165 RPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQQAGRISDQTA--FLMNGDLIEAGPTEEMFIA 236 (251)
T ss_pred CCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHHHHHhhcCEEE--EEECCEEEEeCCHHHHHhC
Confidence 99999999999999963 344443 47899999999999888999999 9999999999999887653
No 210
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.93 E-value=1.7e-25 Score=229.75 Aligned_cols=166 Identities=13% Similarity=0.149 Sum_probs=126.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcc--ccCCCCeEE-------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQKRVV------------------- 155 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll--~~~~~~~i~------------------- 155 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++ +|+. +.|.
T Consensus 3 ~~~l~~~~~~~~~--l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~-G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 3 VKNLTKKFDGKEV--LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTS-GRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred EEEEEEEECCeEe--eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCc-eEEEEeccccccccccccccccc
Confidence 6789999987655 99999999999999999999999999999999997 4653 3332
Q ss_pred ---------------------------------EEcCC-CcccCC-------------CCCchhh----hh-h-------
Q 017797 156 ---------------------------------IVDTS-NEIGGD-------------GDIPHSA----IG-T------- 176 (365)
Q Consensus 156 ---------------------------------~i~~~-~ei~~~-------------~~~~~~~----~~-~------- 176 (365)
++.+. ..+... ..++... +. .
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 22221 111000 0000000 00 0
Q ss_pred ---hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH-------HHHHHHH-cCcEEEEEEcCcchhHHhhhHH
Q 017797 177 ---ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPI 245 (365)
Q Consensus 177 ---~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~-------~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i 245 (365)
.+....+|+||+||+++|+||+++|++||+||||+++|.. .+.++++ .|.|||++||+.+.+..+||++
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i 239 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 0234567999999999999999999999999999999963 3555544 5999999999999999999999
Q ss_pred HHHHHcCcEEEEecCHHHHHHh
Q 017797 246 LSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 246 ~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+ ++++|+++..|+++++...
T Consensus 240 ~--~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 240 I--WLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred E--EEeCCEEeeecCHHHHHHH
Confidence 9 9999999999998877653
No 211
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.8e-25 Score=208.80 Aligned_cols=167 Identities=15% Similarity=0.146 Sum_probs=126.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC----CCCeE------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRV------------------ 154 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~----~~~~i------------------ 154 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+ ..+.|
T Consensus 10 ~~nl~~~~~~~~i--l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~ 87 (261)
T PRK14258 10 VNNLSFYYDTQKI--LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLR 87 (261)
T ss_pred EeeEEEEeCCeeE--eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhh
Confidence 6799999976555 99999999999999999999999999999999999874 12222
Q ss_pred ---EEEcCCCcccCC------------CCC-chhh----hh-h--------------hhhccCCCcchhHHHHHHHHHhh
Q 017797 155 ---VIVDTSNEIGGD------------GDI-PHSA----IG-T--------------ARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 155 ---~~i~~~~ei~~~------------~~~-~~~~----~~-~--------------~~~~~~~S~g~~~r~~la~al~~ 199 (365)
.++.+...+... ... +... .. . .+....+|+||+||+++|++++.
T Consensus 88 ~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~ 167 (261)
T PRK14258 88 RQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAV 167 (261)
T ss_pred ccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 222222111000 000 1000 00 0 01224579999999999999999
Q ss_pred CCCEEEEcCCCcHHHHH-------HHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcC-----cEEEEecCHHHHHH
Q 017797 200 MPEVIIVDEIGTEAEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGG-----VDTVTLGDEEARAR 266 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~~-------~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~-----g~iv~~g~~~~~~~ 266 (365)
+|++|++|||++++|.. .+.+++. .|.|||+++|+.+++..+||+++ ++++ |+++..|++++++.
T Consensus 168 ~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~--~l~~~~~~~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 168 KPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTA--FFKGNENRIGQLVEFGLTKKIFN 245 (261)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEE--EEccCCCcCceEEEeCCHHHHHh
Confidence 99999999999999963 3444443 48999999999999999999999 9998 99999999999875
Q ss_pred h
Q 017797 267 R 267 (365)
Q Consensus 267 ~ 267 (365)
.
T Consensus 246 ~ 246 (261)
T PRK14258 246 S 246 (261)
T ss_pred C
Confidence 4
No 212
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.6e-25 Score=234.20 Aligned_cols=170 Identities=17% Similarity=0.196 Sum_probs=130.4
Q ss_pred eeeEEEEECCc---------ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------
Q 017797 97 IVGLTCRVGRA---------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~---------~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~---------------- 151 (365)
++++++.|+.. ...+++++++.+.+|++++|+||||||||||+++|+|+++|+.|
T Consensus 316 ~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~ 395 (623)
T PRK10261 316 VRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGK 395 (623)
T ss_pred EeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHH
Confidence 67899999621 11248999999999999999999999999999999999987632
Q ss_pred -----CeEEEEcCCCc--ccCC-------------CCC-chh----hh-------hh-----hhhccCCCcchhHHHHHH
Q 017797 152 -----KRVVIVDTSNE--IGGD-------------GDI-PHS----AI-------GT-----ARRMQVPEPSLQHKVMIE 194 (365)
Q Consensus 152 -----~~i~~i~~~~e--i~~~-------------~~~-~~~----~~-------~~-----~~~~~~~S~g~~~r~~la 194 (365)
.+|.++++... +... ... ... .+ +. .+....+|+||+||++||
T Consensus 396 ~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iA 475 (623)
T PRK10261 396 LQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIA 475 (623)
T ss_pred HHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHH
Confidence 13455554321 1100 000 000 00 00 123456799999999999
Q ss_pred HHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 195 AVENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 195 ~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+||+.+|++||+||||+++|. +++++++++ |.|||++||+++++..+||+++ +|.+|+++..|++++++.
T Consensus 476 raL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~--vl~~G~iv~~g~~~~i~~ 553 (623)
T PRK10261 476 RALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVA--VMYLGQIVEIGPRRAVFE 553 (623)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEecCHHHHhc
Confidence 999999999999999999995 455566554 8999999999999999999999 999999999999999876
Q ss_pred hc
Q 017797 267 RC 268 (365)
Q Consensus 267 ~~ 268 (365)
.+
T Consensus 554 ~p 555 (623)
T PRK10261 554 NP 555 (623)
T ss_pred CC
Confidence 43
No 213
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.3e-25 Score=210.57 Aligned_cols=165 Identities=16% Similarity=0.137 Sum_probs=125.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~-----~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++++ ..|
T Consensus 28 ~~nl~~~~~~~~i--l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~ 105 (272)
T PRK14236 28 VRNLNLFYGDKQA--LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELR 105 (272)
T ss_pred EEEEEEEECCeeE--eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHh
Confidence 6789999986555 9999999999999999999999999999999999863 322
Q ss_pred CeEEEEcCCCcccCC------------CCC-chh----hhh-------h--------hhhccCCCcchhHHHHHHHHHhh
Q 017797 152 KRVVIVDTSNEIGGD------------GDI-PHS----AIG-------T--------ARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~-~~~----~~~-------~--------~~~~~~~S~g~~~r~~la~al~~ 199 (365)
..+.++.+...+... ... ... .+. . ......+|+|++||+++|+|++.
T Consensus 106 ~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 185 (272)
T PRK14236 106 RRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAI 185 (272)
T ss_pred ccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHC
Confidence 124444433221110 000 000 000 0 01234579999999999999999
Q ss_pred CCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 200 MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+|++||+|||++++|. +.+.++.+ +.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 186 ~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 256 (272)
T PRK14236 186 EPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTA--FMYMGKLVEYGDTDTLFT 256 (272)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEE--EEECCEEEecCCHHHHhc
Confidence 9999999999999995 34455544 7899999999999988999999 999999999999888754
No 214
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.9e-25 Score=207.43 Aligned_cols=166 Identities=15% Similarity=0.135 Sum_probs=126.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc--cC---CC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--DE---FQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~--~~---~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++ |. .|
T Consensus 8 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 85 (252)
T PRK14255 8 SSDVHLFYGKFEA--LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLR 85 (252)
T ss_pred EEeEEEEECCeeE--EecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhc
Confidence 6799999987555 999999999999999999999999999999999864 31 11
Q ss_pred CeEEEEcCCCcccCC------------CCCch-h----hh-------h--------hhhhccCCCcchhHHHHHHHHHhh
Q 017797 152 KRVVIVDTSNEIGGD------------GDIPH-S----AI-------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~~~-~----~~-------~--------~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
..+.++.+...+... ..... . .. + .......+|+||+||++++++++.
T Consensus 86 ~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~ 165 (252)
T PRK14255 86 KQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAV 165 (252)
T ss_pred CeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhc
Confidence 234555544322110 00000 0 00 0 012334579999999999999999
Q ss_pred CCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|++||+|||++++|.. .+.++.+ +.|||++||+.+++..+||+++ ++++|+++..|++.+.+..
T Consensus 166 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14255 166 KPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTA--FFLTGNLIEFADTKQMFLN 237 (252)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhcC
Confidence 99999999999999953 3444444 5899999999999989999999 9999999999999887754
No 215
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.93 E-value=2e-25 Score=205.32 Aligned_cols=163 Identities=18% Similarity=0.143 Sum_probs=122.4
Q ss_pred CceeeEEEEECCcc--cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc---cCCC---------------CeE
Q 017797 95 GAIVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS---DEFQ---------------KRV 154 (365)
Q Consensus 95 ~~i~~l~~r~~~~~--~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~---~~~~---------------~~i 154 (365)
.++++++++|.... ...++++++.+++|++++|+||||||||||+++|+|+++ |+.| ..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i 83 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCV 83 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccE
Confidence 34678999997642 335999999999999999999999999999999999998 6532 234
Q ss_pred EEEcCCCcccCC-------------CC---Cchh----hhh--h----------hhhccCCCcchhHHHHHHHHHhhCCC
Q 017797 155 VIVDTSNEIGGD-------------GD---IPHS----AIG--T----------ARRMQVPEPSLQHKVMIEAVENHMPE 202 (365)
Q Consensus 155 ~~i~~~~ei~~~-------------~~---~~~~----~~~--~----------~~~~~~~S~g~~~r~~la~al~~~P~ 202 (365)
.++++...+... .. .... ... . .+....+|+|++||++++++++.+|+
T Consensus 84 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 163 (226)
T cd03234 84 AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPK 163 (226)
T ss_pred EEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCC
Confidence 555443322110 00 0000 000 0 02234579999999999999999999
Q ss_pred EEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCc-chhHHhhhHHHHHHHcCcEEEEec
Q 017797 203 VIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGE-WLENIIKNPILSDLIGGVDTVTLG 259 (365)
Q Consensus 203 vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~-~~~~~~~d~i~~~ll~~g~iv~~g 259 (365)
+|++|||++++|. +.+.++.+.|.|+|+++|+. +++..+||+++ ++++|+++..|
T Consensus 164 illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~--~l~~G~i~~~g 226 (226)
T cd03234 164 VLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRIL--LLSSGEIVYSG 226 (226)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEE--EEeCCEEEecC
Confidence 9999999999995 34555556689999999998 47888999999 99999998754
No 216
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.92 E-value=2.6e-25 Score=207.11 Aligned_cols=164 Identities=15% Similarity=0.070 Sum_probs=122.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcc--ccCCC-------------------CeEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQ-------------------KRVV 155 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll--~~~~~-------------------~~i~ 155 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++ +|+.| ..+.
T Consensus 4 ~~nl~~~~~~~~~--l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (248)
T PRK09580 4 IKDLHVSVEDKAI--LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIF 81 (248)
T ss_pred EEEEEEEeCCeee--eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceE
Confidence 6789999986555 99999999999999999999999999999999995 45532 1233
Q ss_pred EEcCCCcccCC-----------CC---------Cchhhhhh---------------h-hhc-cCCCcchhHHHHHHHHHh
Q 017797 156 IVDTSNEIGGD-----------GD---------IPHSAIGT---------------A-RRM-QVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 156 ~i~~~~ei~~~-----------~~---------~~~~~~~~---------------~-~~~-~~~S~g~~~r~~la~al~ 198 (365)
++.+...+... .. ........ . ... ..+|+||+||+++|+|++
T Consensus 82 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (248)
T PRK09580 82 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV 161 (248)
T ss_pred EEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHH
Confidence 33322110000 00 00000000 0 011 258999999999999999
Q ss_pred hCCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHh-hhHHHHHHHcCcEEEEecCHHHH
Q 017797 199 HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 199 ~~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~-~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
.+|++|++||||+++|.. .++.+++.|.|||++||+.+++..+ +|+++ ++++|+++..|+++.+
T Consensus 162 ~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~--~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 162 LEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVH--VLYQGRIVKSGDFTLV 233 (248)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEE--EEECCeEEEeCCHHHH
Confidence 999999999999999953 3445566689999999999988877 89998 8999999999988743
No 217
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.5e-25 Score=210.88 Aligned_cols=166 Identities=20% Similarity=0.148 Sum_probs=126.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC-------------------C
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQ-------------------K 152 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~-----~~~-------------------~ 152 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++| ..| .
T Consensus 24 i~nl~~~~~~~~i--l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 101 (276)
T PRK14271 24 AVNLTLGFAGKTV--LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRR 101 (276)
T ss_pred EeeEEEEECCEEE--eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhh
Confidence 7799999987666 9999999999999999999999999999999999875 211 1
Q ss_pred eEEEEcCCCcccCC-------------CCCchhhh-----------hh--------hhhccCCCcchhHHHHHHHHHhhC
Q 017797 153 RVVIVDTSNEIGGD-------------GDIPHSAI-----------GT--------ARRMQVPEPSLQHKVMIEAVENHM 200 (365)
Q Consensus 153 ~i~~i~~~~ei~~~-------------~~~~~~~~-----------~~--------~~~~~~~S~g~~~r~~la~al~~~ 200 (365)
++.|+.+...+... ........ +. .+....+|+||+||+++|++++.+
T Consensus 102 ~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~ 181 (276)
T PRK14271 102 RVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVN 181 (276)
T ss_pred heEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 23444433221110 00010000 00 011345799999999999999999
Q ss_pred CCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 201 PEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 201 P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|++||+|||++++|.. .+.++.+ +.|||+++|+.+++..+||+++ ++++|+++..|+++++.+.
T Consensus 182 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~--~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 182 PEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAA--LFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 9999999999999953 3444444 5899999999999999999999 9999999999999887653
No 218
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.8e-25 Score=207.73 Aligned_cols=166 Identities=12% Similarity=0.074 Sum_probs=125.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc--C---CC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD--E---FQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~--~---~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++.+ + .|
T Consensus 9 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (253)
T PRK14261 9 TKNLNLWYGEKHA--LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALR 86 (253)
T ss_pred EeeeEEEECCeee--eeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhh
Confidence 6789999987666 9999999999999999999999999999999998642 1 11
Q ss_pred CeEEEEcCCCcccCC------------CCC-chh----hhh-------h--------hhhccCCCcchhHHHHHHHHHhh
Q 017797 152 KRVVIVDTSNEIGGD------------GDI-PHS----AIG-------T--------ARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~-~~~----~~~-------~--------~~~~~~~S~g~~~r~~la~al~~ 199 (365)
..+.++.+...+... ... ... .+. . .+....+|+|++||+++++++..
T Consensus 87 ~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 166 (253)
T PRK14261 87 RKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAV 166 (253)
T ss_pred ceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhc
Confidence 124444443322100 000 000 000 0 02233579999999999999999
Q ss_pred CCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|+++++|||++++|.. .+..+.+ +.|||+++|+.+++..+||+++ ++++|+++..|+++++...
T Consensus 167 ~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14261 167 NPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTG--FMYLGKLIEFDKTTQIFEN 238 (253)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEE--EEECCEEEEcCCHHHHHhC
Confidence 99999999999999953 3444444 6899999999999988999999 9999999999999887653
No 219
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3e-25 Score=211.35 Aligned_cols=166 Identities=12% Similarity=0.112 Sum_probs=125.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc--c---CCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--D---EFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~--~---~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+.. | +.|
T Consensus 42 ~~~l~~~~~~~~i--l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~ 119 (286)
T PRK14275 42 AKNFSIYYGEFEA--VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLR 119 (286)
T ss_pred EeeeEEEECCEEE--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhh
Confidence 6689999976555 999999999999999999999999999999999853 2 311
Q ss_pred CeEEEEcCCCcccCC------------CCCc-hh----hhhh---------------hhhccCCCcchhHHHHHHHHHhh
Q 017797 152 KRVVIVDTSNEIGGD------------GDIP-HS----AIGT---------------ARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~~-~~----~~~~---------------~~~~~~~S~g~~~r~~la~al~~ 199 (365)
..+.|+++...+... .... .. .+.. ......+|+||+||+++++|++.
T Consensus 120 ~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~ 199 (286)
T PRK14275 120 KKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAV 199 (286)
T ss_pred hcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 124444443322100 0000 00 0000 12234579999999999999999
Q ss_pred CCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|++||+|||++++|.. .++++.. +.+||+++|+.+++..+||+++ ++++|+++..|+++++...
T Consensus 200 ~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~--~L~~G~i~~~g~~~~~~~~ 271 (286)
T PRK14275 200 EPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTM--FFYEGVLVEHAPTAQLFTN 271 (286)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 99999999999999953 3444433 6899999999999999999999 9999999999999887653
No 220
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.92 E-value=2.5e-25 Score=205.26 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=117.6
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc----CCC----------------CeEEEEcCCCc--ccCC---
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD----EFQ----------------KRVVIVDTSNE--IGGD--- 166 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~----~~~----------------~~i~~i~~~~e--i~~~--- 166 (365)
++++++.+++|++++|+||||||||||+++|+|+++| +.| ..+.++.+... +...
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 5788999999999999999999999999999999987 422 23555554431 1100
Q ss_pred ----------CCCchhh----h---------h-----hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH---
Q 017797 167 ----------GDIPHSA----I---------G-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA--- 215 (365)
Q Consensus 167 ----------~~~~~~~----~---------~-----~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~--- 215 (365)
....... + . .......+|+|++||+++++|++.+|++||+||||+++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~ 161 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQ 161 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 0000000 0 0 0112345799999999999999999999999999999995
Q ss_pred ----HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 216 ----HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 216 ----~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+.+.++++ .|.|||+++|+.+++..+||+++ ++++|+++..|++++++.
T Consensus 162 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 162 ARVLKLLRELRQLFGTGILLITHDLGVVARIADEVA--VMDDGRIVERGTVKEIFY 215 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHh
Confidence 34555555 48999999999999989999999 999999999999988765
No 221
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.9e-25 Score=209.40 Aligned_cols=181 Identities=12% Similarity=0.108 Sum_probs=133.3
Q ss_pred CCCeeeEecCceEEEEEEEecCCceeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc----
Q 017797 73 GGDNRAGIEGTLHRISAIRSRKGAIVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD---- 148 (365)
Q Consensus 73 ~~~~~~~~~g~~~rv~~~~~~~~~i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~---- 148 (365)
...|-+.+++... +.. +++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++.|
T Consensus 7 ~~~~~~~~~~~~~----~l~----~~nl~~~~~~~~i--l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~ 76 (267)
T PRK14237 7 NERHIITFPEEEI----ALS----TKDLHVYYGKKEA--IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIA 76 (267)
T ss_pred ccceeEecCCCCe----EEE----EeeEEEEECCeee--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCC
Confidence 3445555555433 223 6689999976555 9999999999999999999999999999999999863
Q ss_pred -CCC--------------------CeEEEEcCCCcccCC------------CCC-chhhhh--------h----------
Q 017797 149 -EFQ--------------------KRVVIVDTSNEIGGD------------GDI-PHSAIG--------T---------- 176 (365)
Q Consensus 149 -~~~--------------------~~i~~i~~~~ei~~~------------~~~-~~~~~~--------~---------- 176 (365)
+.| ..+.++++...+... ... ...... .
T Consensus 77 ~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~ 156 (267)
T PRK14237 77 RVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDD 156 (267)
T ss_pred CcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhh
Confidence 322 124444443222110 000 000000 0
Q ss_pred -hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHH
Q 017797 177 -ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSD 248 (365)
Q Consensus 177 -~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ 248 (365)
......+|+|++||+++++|+..+|++|++|||++++|. +.+.++. ++.+||++||+.+++..+||+++
T Consensus 157 ~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~-- 233 (267)
T PRK14237 157 LHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYTA-- 233 (267)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEEE--
Confidence 012345799999999999999999999999999999995 3344443 47899999999999989999999
Q ss_pred HHcCcEEEEecCHHHHHH
Q 017797 249 LIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 249 ll~~g~iv~~g~~~~~~~ 266 (365)
++++|+++..|+++++..
T Consensus 234 ~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14237 234 FFYLGDLIEYDKTRNIFT 251 (267)
T ss_pred EEECCEEEEeCCHHHHhc
Confidence 999999999999988765
No 222
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.92 E-value=2.3e-25 Score=202.07 Aligned_cols=160 Identities=16% Similarity=0.180 Sum_probs=120.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+......++++++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.+++
T Consensus 9 ~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 88 (207)
T cd03369 9 VENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIP 88 (207)
T ss_pred EEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEe
Confidence 6689999975322349999999999999999999999999999999999987633 2345554
Q ss_pred CCCcccCC---------CCCchhhh----hhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH-------HH
Q 017797 159 TSNEIGGD---------GDIPHSAI----GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------AC 218 (365)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~----~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~-------~i 218 (365)
+...+... .......+ ........+|+|++||++++++++.+|++||+|||++++|.. .+
T Consensus 89 q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l 168 (207)
T cd03369 89 QDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTI 168 (207)
T ss_pred cCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 44322110 00111100 001234568999999999999999999999999999999963 33
Q ss_pred HHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecC
Q 017797 219 RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (365)
Q Consensus 219 ~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~ 260 (365)
+++ .+|.|+|++||+.+++.. ||+++ ++++|+++..|+
T Consensus 169 ~~~-~~~~tiii~th~~~~~~~-~d~v~--~l~~g~i~~~g~ 206 (207)
T cd03369 169 REE-FTNSTILTIAHRLRTIID-YDKIL--VMDAGEVKEYDH 206 (207)
T ss_pred HHh-cCCCEEEEEeCCHHHHhh-CCEEE--EEECCEEEecCC
Confidence 333 348999999999998865 99999 999999987765
No 223
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.92 E-value=6.3e-25 Score=248.80 Aligned_cols=165 Identities=14% Similarity=0.115 Sum_probs=129.1
Q ss_pred eeeEEEEEC--CcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------CeEEEE
Q 017797 97 IVGLTCRVG--RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~--~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----------------~~i~~i 157 (365)
+++++++|+ +..+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| +.++++
T Consensus 931 I~nLsK~y~~~~k~a--L~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~ 1008 (2272)
T TIGR01257 931 VKNLVKIFEPSGRPA--VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMC 1008 (2272)
T ss_pred EEeEEEEecCCCceE--EEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEE
Confidence 779999995 3344 9999999999999999999999999999999999988742 124444
Q ss_pred cCCCcccCC-------------CCCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCC
Q 017797 158 DTSNEIGGD-------------GDIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (365)
Q Consensus 158 ~~~~ei~~~-------------~~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp 209 (365)
++...+... .+.+... +. . .++...+|+|||||+++|+|++.+|++|++|||
T Consensus 1009 pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEP 1088 (2272)
T TIGR01257 1009 PQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEP 1088 (2272)
T ss_pred ecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 443322110 1111100 00 0 123456799999999999999999999999999
Q ss_pred CcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 210 GTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 210 ~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|+++|+ +.+++++ +|.|||+|||++++++.+||+++ ++++|+++..|++..+.+
T Consensus 1089 TSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laDrI~--iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1089 TSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIA--IISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred CcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEecCHHHHHH
Confidence 999995 3455553 59999999999999999999999 999999999999988764
No 224
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.92 E-value=2.1e-25 Score=204.11 Aligned_cols=158 Identities=15% Similarity=0.145 Sum_probs=117.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+......++++++.+.+|++++|+||||||||||+++|+|+.+|+.| ..+.+++
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 84 (220)
T cd03245 5 FRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVP 84 (220)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeC
Confidence 6789999975321249999999999999999999999999999999999987633 1244554
Q ss_pred CCCcccCC----------CCCchhhhhh----------hh------------hccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD----------GDIPHSAIGT----------AR------------RMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------~~------------~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+... .......+.. .. ....+|+||+||++++++++.+|++||+
T Consensus 85 q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llll 164 (220)
T cd03245 85 QDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLL 164 (220)
T ss_pred CCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44322110 0000000000 01 1247899999999999999999999999
Q ss_pred cCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEe
Q 017797 207 DEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (365)
Q Consensus 207 DEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~ 258 (365)
||||+++|.. .+.++.+ +.|||++||+.++. .+||+++ ++++|+++..
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~-~~~d~v~--~l~~g~i~~~ 219 (220)
T cd03245 165 DEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSLL-DLVDRII--VMDSGRIVAD 219 (220)
T ss_pred eCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHH-HhCCEEE--EEeCCeEeec
Confidence 9999999953 3444444 48999999999977 5899999 8999998764
No 225
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.92 E-value=2.6e-25 Score=228.84 Aligned_cols=169 Identities=17% Similarity=0.216 Sum_probs=129.2
Q ss_pred eeeEEEEECCc--ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC------------------
Q 017797 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQ------------------ 151 (365)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~-----~~~------------------ 151 (365)
+++++++|+.. ....++++++.+.+|++++|+||||||||||+++|+|+++| +.|
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 87 (529)
T PRK15134 8 IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLR 87 (529)
T ss_pred EeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHH
Confidence 67899999631 11249999999999999999999999999999999999975 221
Q ss_pred ----CeEEEEcCCCc--ccCC--------------CCCchhh----h-------hh-------hhhccCCCcchhHHHHH
Q 017797 152 ----KRVVIVDTSNE--IGGD--------------GDIPHSA----I-------GT-------ARRMQVPEPSLQHKVMI 193 (365)
Q Consensus 152 ----~~i~~i~~~~e--i~~~--------------~~~~~~~----~-------~~-------~~~~~~~S~g~~~r~~l 193 (365)
.++.++.+... +... ..++... + +. .++...+|+||+||+++
T Consensus 88 ~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~i 167 (529)
T PRK15134 88 GVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMI 167 (529)
T ss_pred HHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHH
Confidence 23566655432 1100 0111100 0 00 12345689999999999
Q ss_pred HHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHH
Q 017797 194 EAVENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (365)
Q Consensus 194 a~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~ 265 (365)
|+||+++|++||+||||+++|+ +.+.+++++ |.|||++||+.+++..+||+++ ++++|+++..|++++++
T Consensus 168 AraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~--~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 168 AMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVA--VMQNGRCVEQNRAATLF 245 (529)
T ss_pred HHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEE--EEECCEEEEeCCHHHHh
Confidence 9999999999999999999995 345555554 8999999999999999999999 99999999999998876
Q ss_pred Hh
Q 017797 266 RR 267 (365)
Q Consensus 266 ~~ 267 (365)
..
T Consensus 246 ~~ 247 (529)
T PRK15134 246 SA 247 (529)
T ss_pred hC
Confidence 43
No 226
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.9e-25 Score=208.20 Aligned_cols=166 Identities=16% Similarity=0.128 Sum_probs=125.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~-----~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++.+ +.|
T Consensus 13 i~~v~~~~~~~~i--l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 90 (264)
T PRK14243 13 TENLNVYYGSFLA--VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVR 90 (264)
T ss_pred EeeeEEEECCEEE--eecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHh
Confidence 6789999987655 9999999999999999999999999999999998752 211
Q ss_pred CeEEEEcCCCcccCC------------CCCch---hhhh-------h--------hhhccCCCcchhHHHHHHHHHhhCC
Q 017797 152 KRVVIVDTSNEIGGD------------GDIPH---SAIG-------T--------ARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~~~---~~~~-------~--------~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
.++.++.+...+... ..... .... . .+....+|+||+||+++|+|++.+|
T Consensus 91 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p 170 (264)
T PRK14243 91 RRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQP 170 (264)
T ss_pred hhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 123444433221100 00000 0000 0 0123347999999999999999999
Q ss_pred CEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHc---------CcEEEEecCHHHHH
Q 017797 202 EVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIG---------GVDTVTLGDEEARA 265 (365)
Q Consensus 202 ~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~---------~g~iv~~g~~~~~~ 265 (365)
++||+|||++++|.. .+..+.+ +.|||+++|+.+.+..+||+++ +++ .|+++..|++++++
T Consensus 171 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~--~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 171 EVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTA--FFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEE--EEecccccccccCceEEEeCCHHHHH
Confidence 999999999999953 3444444 5899999999999999999999 887 79999999999987
Q ss_pred Hh
Q 017797 266 RR 267 (365)
Q Consensus 266 ~~ 267 (365)
..
T Consensus 248 ~~ 249 (264)
T PRK14243 248 NS 249 (264)
T ss_pred hC
Confidence 54
No 227
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.2e-25 Score=207.32 Aligned_cols=166 Identities=13% Similarity=0.142 Sum_probs=125.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC----CCCe-------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKR------------------- 153 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~----~~~~------------------- 153 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++++ ..+.
T Consensus 10 ~~~l~~~~~~~~i--l~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 87 (259)
T PRK14260 10 VKDLSFYYNTSKA--IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLR 87 (259)
T ss_pred EEEEEEEECCeEe--ecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhh
Confidence 6789999986555 99999999999999999999999999999999998742 1222
Q ss_pred --EEEEcCCCcccCC-------------CCCchhh----h-------hh--------hhhccCCCcchhHHHHHHHHHhh
Q 017797 154 --VVIVDTSNEIGGD-------------GDIPHSA----I-------GT--------ARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 154 --i~~i~~~~ei~~~-------------~~~~~~~----~-------~~--------~~~~~~~S~g~~~r~~la~al~~ 199 (365)
+.++.+...+... ...+... . +. .+....+|+|++||+++|+|++.
T Consensus 88 ~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 167 (259)
T PRK14260 88 RQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAI 167 (259)
T ss_pred hheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 3333333221110 0001000 0 00 01234579999999999999999
Q ss_pred CCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHc-----CcEEEEecCHHHHHHh
Q 017797 200 MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIG-----GVDTVTLGDEEARARR 267 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~-----~g~iv~~g~~~~~~~~ 267 (365)
+|++|++||||+++|. +.+.++.+ +.|||++||+.+++..+||+++ +++ +|+++..|++++++..
T Consensus 168 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~--~l~~~~~~~G~i~~~~~~~~~~~~ 244 (259)
T PRK14260 168 KPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTA--FFSTDESRIGQMVEFGVTTQIFSN 244 (259)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEE--EEeccCCCCceEEEeCCHHHHhcC
Confidence 9999999999999995 34444443 6899999999999999999999 886 5999999999987653
No 228
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.2e-25 Score=206.28 Aligned_cols=166 Identities=12% Similarity=0.125 Sum_probs=125.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc--c---CCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--D---EFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~--~---~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+.. | +.|
T Consensus 8 ~~~l~~~~~~~~~--l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 8 VKNLNLWYGSKQI--LFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred eeeEEEEECCeee--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 6789999976555 999999999999999999999999999999999975 2 222
Q ss_pred CeEEEEcCCCcccCC------------CCCc--hhh----hh-hh--------------hhccCCCcchhHHHHHHHHHh
Q 017797 152 KRVVIVDTSNEIGGD------------GDIP--HSA----IG-TA--------------RRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~~--~~~----~~-~~--------------~~~~~~S~g~~~r~~la~al~ 198 (365)
..+.|+.+...+... .... ... +. .. .....+|+||+||+++++++.
T Consensus 86 ~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 165 (251)
T PRK14244 86 AKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA 165 (251)
T ss_pred hhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence 124444443221110 0000 000 00 00 123457999999999999999
Q ss_pred hCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 199 HMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 199 ~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
.+|++||+|||++++|. +.+..+. +|.|||+++|+.+++..+||+++ ++++|+++..|++++++..
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 238 (251)
T PRK14244 166 VKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVA--FFQSGRIVEYNTTQEIFKN 238 (251)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEE--EEECCEEEEeCCHHHHhcC
Confidence 99999999999999995 3344443 48999999999999989999999 9999999999998887653
No 229
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.6e-25 Score=234.22 Aligned_cols=169 Identities=16% Similarity=0.185 Sum_probs=128.4
Q ss_pred eeeEEEEECCc--ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------------
Q 017797 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------------- 152 (365)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~---------------------- 152 (365)
+++++++|+.. ...+++++++.+.+|++++|+||||||||||+++|+|+++|+.|.
T Consensus 15 v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 94 (623)
T PRK10261 15 VENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQS 94 (623)
T ss_pred EeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCC
Confidence 77899999632 112499999999999999999999999999999999999876321
Q ss_pred ----------eEEEEcCCC--cccCC--------------CCCchhh----h-------hh-------hhhccCCCcchh
Q 017797 153 ----------RVVIVDTSN--EIGGD--------------GDIPHSA----I-------GT-------ARRMQVPEPSLQ 188 (365)
Q Consensus 153 ----------~i~~i~~~~--ei~~~--------------~~~~~~~----~-------~~-------~~~~~~~S~g~~ 188 (365)
+|.++.+.. .+... ..++... + +. .+....+|+||+
T Consensus 95 ~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~ 174 (623)
T PRK10261 95 AAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMR 174 (623)
T ss_pred HHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHH
Confidence 234443322 11000 0111100 0 00 123455799999
Q ss_pred HHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecC
Q 017797 189 HKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (365)
Q Consensus 189 ~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~ 260 (365)
||++||+||+.+|++||+||||+++|. +.++.+.++ |.|||++||+.+++..+||+++ +|++|+++..|+
T Consensus 175 QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~--vl~~G~i~~~g~ 252 (623)
T PRK10261 175 QRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVL--VMYQGEAVETGS 252 (623)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE--EeeCCeecccCC
Confidence 999999999999999999999999995 345566544 9999999999999999999999 999999999999
Q ss_pred HHHHHHh
Q 017797 261 EEARARR 267 (365)
Q Consensus 261 ~~~~~~~ 267 (365)
+++++..
T Consensus 253 ~~~~~~~ 259 (623)
T PRK10261 253 VEQIFHA 259 (623)
T ss_pred HHHhhcC
Confidence 9888653
No 230
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.8e-25 Score=209.82 Aligned_cols=166 Identities=17% Similarity=0.164 Sum_probs=124.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc-----cCCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~-----~~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++ |+.|
T Consensus 42 i~~l~~~~~~~~i--l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~ 119 (285)
T PRK14254 42 ARDLNVFYGDEQA--LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALR 119 (285)
T ss_pred EEEEEEEECCEee--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhh
Confidence 6789999987655 999999999999999999999999999999999986 2321
Q ss_pred CeEEEEcCCCcccCC------------CCCchh---hh-------hh--------hhhccCCCcchhHHHHHHHHHhhCC
Q 017797 152 KRVVIVDTSNEIGGD------------GDIPHS---AI-------GT--------ARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~~~~---~~-------~~--------~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
.++.++++...+... ...+.. .+ +. ..+...+|+||+||+++|+|++.+|
T Consensus 120 ~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p 199 (285)
T PRK14254 120 RRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDP 199 (285)
T ss_pred ccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 123444443222110 000100 00 00 1223467999999999999999999
Q ss_pred CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 202 EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 202 ~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++||+|||++++|. ++++++++ +.|||+++|+.+++..+||+++. ++++|+++..|+++++..
T Consensus 200 ~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dri~v-~l~~G~i~~~g~~~~~~~ 269 (285)
T PRK14254 200 EVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDKTAV-FLTGGELVEFDDTDKIFE 269 (285)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEEEE-EeeCCEEEEeCCHHHHHh
Confidence 99999999999995 34455544 47999999999999999999641 568999999999888754
No 231
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.2e-25 Score=227.34 Aligned_cols=165 Identities=16% Similarity=0.204 Sum_probs=127.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCcccCCCC-
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGDGD- 168 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------~~i~~i~~~~ei~~~~~- 168 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||||+|+|+++|+.| .++.++.+...+.....
T Consensus 4 i~~ls~~~~~~~i--l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv 81 (530)
T PRK15064 4 TANITMQFGAKPL--FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTV 81 (530)
T ss_pred EEEEEEEeCCcEe--EeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcH
Confidence 6799999987655 9999999999999999999999999999999999988643 23555554322211000
Q ss_pred -----------------------Cc-------------------------hhhh-------hh---h--hhccCCCcchh
Q 017797 169 -----------------------IP-------------------------HSAI-------GT---A--RRMQVPEPSLQ 188 (365)
Q Consensus 169 -----------------------~~-------------------------~~~~-------~~---~--~~~~~~S~g~~ 188 (365)
.+ ...+ +. . +....+|+||+
T Consensus 82 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~ 161 (530)
T PRK15064 82 LDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWK 161 (530)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHH
Confidence 00 0000 00 0 23466899999
Q ss_pred HHHHHHHHHhhCCCEEEEcCCCcHHHHHHHH----HHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEE-EecCHHH
Q 017797 189 HKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV-TLGDEEA 263 (365)
Q Consensus 189 ~r~~la~al~~~P~vlilDEp~~~~d~~~i~----~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv-~~g~~~~ 263 (365)
||+++|++++.+|++|++||||+++|..... .+.+.|.|||+++|+.+++..+||+++ ++++|+++ ..|++++
T Consensus 162 qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~--~l~~g~i~~~~g~~~~ 239 (530)
T PRK15064 162 LRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMA--DLDYGELRVYPGNYDE 239 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEE--EEeCCEEEEecCCHHH
Confidence 9999999999999999999999999964322 234568999999999999999999999 99999984 7788876
Q ss_pred HH
Q 017797 264 RA 265 (365)
Q Consensus 264 ~~ 265 (365)
..
T Consensus 240 ~~ 241 (530)
T PRK15064 240 YM 241 (530)
T ss_pred HH
Confidence 64
No 232
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.7e-25 Score=200.33 Aligned_cols=160 Identities=12% Similarity=0.085 Sum_probs=115.1
Q ss_pred eeeEEEEECCc--ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc---cCCCCeEE----------------
Q 017797 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS---DEFQKRVV---------------- 155 (365)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~---~~~~~~i~---------------- 155 (365)
++++++.|... ....++++++.+++|++++|+||||||||||+++|+|+++ |+. +.|.
T Consensus 6 ~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~-G~i~i~g~~~~~~~~~~~~~ 84 (202)
T cd03233 6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVE-GDIHYNGIPYKEFAEKYPGE 84 (202)
T ss_pred EEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcc-eEEEECCEECccchhhhcce
Confidence 67899999643 2234899999999999999999999999999999999998 553 3332
Q ss_pred --EEcCCCcccCCCCCchhhhh-----hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHH
Q 017797 156 --IVDTSNEIGGDGDIPHSAIG-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSI 221 (365)
Q Consensus 156 --~i~~~~ei~~~~~~~~~~~~-----~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~ 221 (365)
++.+...+.....+..+... .......+|+|++||+++++|++.+|++|++|||++++|. +.+.++
T Consensus 85 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 164 (202)
T cd03233 85 IIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164 (202)
T ss_pred EEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 22221111100011111000 1124456899999999999999999999999999999995 345555
Q ss_pred HHc-CcEEEE-EEcCcchhHHhhhHHHHHHHcCcEEEEec
Q 017797 222 AER-GVMLIG-TAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (365)
Q Consensus 222 ~~~-G~tVi~-t~H~~~~~~~~~d~i~~~ll~~g~iv~~g 259 (365)
.+. +.++++ ++|..+.+..+||+++ ++++|+++..|
T Consensus 165 ~~~~~~t~ii~~~h~~~~~~~~~d~i~--~l~~G~i~~~g 202 (202)
T cd03233 165 ADVLKTTTFVSLYQASDEIYDLFDKVL--VLYEGRQIYYG 202 (202)
T ss_pred HHhCCCEEEEEEcCCHHHHHHhCCeEE--EEECCEEEecC
Confidence 554 566555 5566677888999999 99999987653
No 233
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=4.2e-25 Score=222.33 Aligned_cols=169 Identities=14% Similarity=0.152 Sum_probs=128.7
Q ss_pred eeeEEEEECCcc-cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC------CcccCC---
Q 017797 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS------NEIGGD--- 166 (365)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~------~ei~~~--- 166 (365)
+++++++|.... ...++++++.+.+|++++|+||||||||||+++|+|+++|+. +.|.+-... ..+...
T Consensus 24 lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~s-GeI~I~G~~~~i~~~~~l~~~lTV 102 (549)
T PRK13545 24 LKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNK-GTVDIKGSAALIAISSGLNGQLTG 102 (549)
T ss_pred EEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc-eEEEECCEeeeEEeccccCCCCcH
Confidence 668888887632 124899999999999999999999999999999999998874 344321110 000000
Q ss_pred ----------CCCchhhh-----------h----hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH-----
Q 017797 167 ----------GDIPHSAI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH----- 216 (365)
Q Consensus 167 ----------~~~~~~~~-----------~----~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~----- 216 (365)
........ + ..+....+|+||+||+++|+|++.+|++||+|||++++|..
T Consensus 103 ~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~L 182 (549)
T PRK13545 103 IENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKC 182 (549)
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 00111000 0 01334567999999999999999999999999999999963
Q ss_pred --HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhc
Q 017797 217 --ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (365)
Q Consensus 217 --~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~ 268 (365)
.+.+++++|.|||+++|+.+++..+||+++ ++++|+++..|+++++....
T Consensus 183 lelL~el~~~G~TIIIVSHdl~~i~~l~DrIi--vL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 183 LDKMNEFKEQGKTIFFISHSLSQVKSFCTKAL--WLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhhH
Confidence 455556679999999999999999999999 99999999999999887643
No 234
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=7.1e-25 Score=206.42 Aligned_cols=154 Identities=17% Similarity=0.177 Sum_probs=118.8
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE------EEcCCCcccCC-------------CCCch
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------IVDTSNEIGGD-------------GDIPH 171 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~------~i~~~~ei~~~-------------~~~~~ 171 (365)
.++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|. ++.+...+... .....
T Consensus 39 il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~ 117 (264)
T PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG-KVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKR 117 (264)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCH
Confidence 47899999999999999999999999999999999988743 332 22222111100 01111
Q ss_pred hhhh-----h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEE
Q 017797 172 SAIG-----T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLI 229 (365)
Q Consensus 172 ~~~~-----~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi 229 (365)
.... . ......+|+||+||+++++|++.+|++||+|||++++|+. .+..+.+.|.|||
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiI 197 (264)
T PRK13546 118 KEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIF 197 (264)
T ss_pred HHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 0000 0 0234567999999999999999999999999999999963 4555556799999
Q ss_pred EEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 230 GTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 230 ~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+++|+.+++..+||+++ ++++|+++..|+++++...
T Consensus 198 iisH~~~~i~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 198 FVSHNLGQVRQFCTKIA--WIEGGKLKDYGELDDVLPK 233 (264)
T ss_pred EEcCCHHHHHHHcCEEE--EEECCEEEEeCCHHHHHHH
Confidence 99999999999999999 9999999999999887754
No 235
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.8e-25 Score=214.36 Aligned_cols=170 Identities=14% Similarity=0.091 Sum_probs=128.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~-----~~~-------------------- 151 (365)
+++++++|.......++++++.+.+|+.++|+||||||||||+++|+|+..+ +.|
T Consensus 83 ~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr 162 (329)
T PRK14257 83 IRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELR 162 (329)
T ss_pred EEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhh
Confidence 6789999964322349999999999999999999999999999999999853 211
Q ss_pred CeEEEEcCCCcccCC------------CCCchhhh---------h-----------hhhhccCCCcchhHHHHHHHHHhh
Q 017797 152 KRVVIVDTSNEIGGD------------GDIPHSAI---------G-----------TARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~~~~~~---------~-----------~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
+.+.++++...+... ........ . ..++...+|+|++||++||+|+..
T Consensus 163 ~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~ 242 (329)
T PRK14257 163 TRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIAL 242 (329)
T ss_pred ccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHh
Confidence 235555554332110 00000000 0 012234479999999999999999
Q ss_pred CCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
+|++|++|||++++|.. .+..+.+ +.|+|++||+++.+..+||+++ ++++|+++..|++++++..+.
T Consensus 243 ~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Drii--vl~~G~i~e~g~~~~l~~~~~ 316 (329)
T PRK14257 243 EPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETV--FFYQGWIEEAGETKTIFIHPK 316 (329)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhcCCC
Confidence 99999999999999953 3444443 6999999999999988999999 999999999999999987544
No 236
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.92 E-value=5.1e-25 Score=205.70 Aligned_cols=163 Identities=16% Similarity=0.127 Sum_probs=121.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhc--cccCCCC-------------------eEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV--LSDEFQK-------------------RVV 155 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gl--l~~~~~~-------------------~i~ 155 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+ ++|+.|. .+.
T Consensus 10 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 87 (252)
T CHL00131 10 IKNLHASVNENEI--LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIF 87 (252)
T ss_pred EEeEEEEeCCEEe--eecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEE
Confidence 6789999976555 9999999999999999999999999999999998 3454221 122
Q ss_pred EEcCCCcccC-----------CC------CCch-------hhhh-------h-----hhhcc-CCCcchhHHHHHHHHHh
Q 017797 156 IVDTSNEIGG-----------DG------DIPH-------SAIG-------T-----ARRMQ-VPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 156 ~i~~~~ei~~-----------~~------~~~~-------~~~~-------~-----~~~~~-~~S~g~~~r~~la~al~ 198 (365)
++.+...+.. .. .... ..+. . .+... .+|+|++||+++|+|++
T Consensus 88 ~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~ 167 (252)
T CHL00131 88 LAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMAL 167 (252)
T ss_pred EEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHH
Confidence 3322211100 00 0000 0000 0 01222 48999999999999999
Q ss_pred hCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHh-hhHHHHHHHcCcEEEEecCHHH
Q 017797 199 HMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEEA 263 (365)
Q Consensus 199 ~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~-~d~i~~~ll~~g~iv~~g~~~~ 263 (365)
.+|++||+||||+++|. +.+.++++.|.|||++||+.+++..+ ||+++ ++++|+++..|+++.
T Consensus 168 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~--~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 168 LDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVH--VMQNGKIIKTGDAEL 238 (252)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEE--EEeCCEEEEecChhh
Confidence 99999999999999995 34555566799999999999988876 89999 999999999998873
No 237
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=99.92 E-value=1.4e-23 Score=205.32 Aligned_cols=223 Identities=20% Similarity=0.132 Sum_probs=161.4
Q ss_pred CHHHHHHHhcccCCCCeEEEEEecCCceEEEEeCccCceecCCCCCCHHHHHHHHHHHhc----------cCCCee----
Q 017797 12 PSDLRDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGE----------FGGDNR---- 77 (365)
Q Consensus 12 p~~i~~~l~~~~~~~~~~ei~l~~g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~~~----------~~~~~~---- 77 (365)
|..+.+.|..+.. .++|||||..|+||++|.+|++. +....++++++++.+++.+.. .+.|.+
T Consensus 9 ~~~~~~ll~~~~~-~~~SDI~l~~g~~v~ir~~G~l~--~~~~~~l~~~~~~~~i~~i~~~~~~~~l~~~~~vd~a~~~~ 85 (372)
T TIGR02525 9 ADTLRRFFVHCSR-HEVSDIHLQGGSPIVVERHGRQV--PASSFPLDNLELERLVDEVFGPEIKPTVKSGAPVDRAIQLR 85 (372)
T ss_pred HHHHHHHHHHHhh-CCCceEEEcCCCCeEEEECCeEE--ECCCCCCCHHHHHHHHHHHhHHHHHHHHhccCCcccceecc
Confidence 4667777766554 78999999999999999999864 666678999999988876621 123333
Q ss_pred ------eEec-C--ceEEEEEEEe-----cCCceeeEEEEECCccc------Ccchh-hhhcccCCcEEEEEcCCCCcHH
Q 017797 78 ------AGIE-G--TLHRISAIRS-----RKGAIVGLTCRVGRAVS------GHIDM-VYDLLHYGKSILFVGRPGVGKT 136 (365)
Q Consensus 78 ------~~~~-g--~~~rv~~~~~-----~~~~i~~l~~r~~~~~~------~~~~~-l~~~l~~g~~v~iiGpnGsGKT 136 (365)
++++ | .+||+|++.. ..++ .+++|.....+ +..+. +...+.+++.++|+||+|||||
T Consensus 86 ~~~~g~~~l~~g~~~rfR~n~~~~~~~~~~~~~--~i~iR~~~~~~~~l~~lgl~~~~~~~l~~~~GlilI~G~TGSGKT 163 (372)
T TIGR02525 86 GDENGRYGLGRGERVRFRCNFIQATIGKLETAI--SLTLRVIPSDIPDLKQMGIEPDLFNSLLPAAGLGLICGETGSGKS 163 (372)
T ss_pred cccccceeccCCceEEEEEEEecccccccCCCc--eEEEEeCCCcCCCHHHcCCCHHHHHHHHhcCCEEEEECCCCCCHH
Confidence 3333 3 3799999863 3455 89999876554 22222 2223456779999999999999
Q ss_pred HHHHHHHhccccC-CCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH
Q 017797 137 TVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (365)
Q Consensus 137 Tllr~l~gll~~~-~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~ 215 (365)
|+|++|++.++.+ ...++++++++.|+..... +.+....+.++..+...+..++..+|+++||+|+++|.++.+++
T Consensus 164 T~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~---~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~vGEiRd~et~ 240 (372)
T TIGR02525 164 TLAASIYQHCGETYPDRKIVTYEDPIEYILGSP---DDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIGVGEIRDLETF 240 (372)
T ss_pred HHHHHHHHHHHhcCCCceEEEEecCchhccCCC---ceeecccccccCCCccCHHHHHHHhhccCCCEEeeCCCCCHHHH
Confidence 9999999998632 1478999999999753210 00100112223333335667899999999999999999999999
Q ss_pred HHHHHHHHcCcEEEEEEcCcchhHHhh
Q 017797 216 HACRSIAERGVMLIGTAHGEWLENIIK 242 (365)
Q Consensus 216 ~~i~~~~~~G~tVi~t~H~~~~~~~~~ 242 (365)
+++..++++||.|+.|.|..+..+.+.
T Consensus 241 ~~al~aa~TGH~v~tTlHa~s~~~ai~ 267 (372)
T TIGR02525 241 QAAVLAGQSGHFCLGTLHVKSPGEAIS 267 (372)
T ss_pred HHHHHHHhcCCcEEEeeCCCCHHHHHH
Confidence 988899999999999999999776544
No 238
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.92 E-value=2.4e-25 Score=201.52 Aligned_cols=146 Identities=14% Similarity=0.198 Sum_probs=107.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE---------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------------- 155 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~--------------------- 155 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|.
T Consensus 1 i~~l~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGDKII--LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSG-QVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECCEEE--EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEccccchhhHHHHHHhC
Confidence 3589999986555 9999999999999999999999999999999999988743 332
Q ss_pred --EEcCCCcccCCCCC-------------chh----hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 156 --IVDTSNEIGGDGDI-------------PHS----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 156 --~i~~~~ei~~~~~~-------------~~~----~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
++.+...+.....+ ... .+. . .+....+|+|++||+++++||+.+|++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~lll 157 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLIL 157 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 22222111100000 000 000 0 02334579999999999999999999999
Q ss_pred EcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 206 VDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 206 lDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
+|||++++|. +.++++.++|.++|+++|+.+... +||+++
T Consensus 158 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i~ 204 (206)
T TIGR03608 158 ADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRVI 204 (206)
T ss_pred EeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEE
Confidence 9999999995 345555566899999999998664 677665
No 239
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=3e-25 Score=226.89 Aligned_cols=164 Identities=19% Similarity=0.220 Sum_probs=127.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc--CCC-------------------CeEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD--EFQ-------------------KRVV 155 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~--~~~-------------------~~i~ 155 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++| +.| ..+.
T Consensus 4 i~~l~~~~~~~~i--l~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (500)
T TIGR02633 4 MKGIVKTFGGVKA--LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV 81 (500)
T ss_pred EEeEEEEeCCeEe--ecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEE
Confidence 6799999987655 9999999999999999999999999999999999976 322 1355
Q ss_pred EEcCCCcccCC---------C-C-------Cchhh----hh-------h-----hhhccCCCcchhHHHHHHHHHhhCCC
Q 017797 156 IVDTSNEIGGD---------G-D-------IPHSA----IG-------T-----ARRMQVPEPSLQHKVMIEAVENHMPE 202 (365)
Q Consensus 156 ~i~~~~ei~~~---------~-~-------~~~~~----~~-------~-----~~~~~~~S~g~~~r~~la~al~~~P~ 202 (365)
|+++...+... . . ..... +. . .+....+|+||+||+++|+|+..+|+
T Consensus 82 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~ 161 (500)
T TIGR02633 82 IIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQAR 161 (500)
T ss_pred EEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCC
Confidence 55554322110 0 0 10000 00 0 02245689999999999999999999
Q ss_pred EEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 203 VIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 203 vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
+||+||||+++|. +.+.++++.|.|||++||+.+++..+||+++ ++++|+++..+++++.
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~--~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 162 LLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTIC--VIRDGQHVATKDMSTM 228 (500)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEE--EEeCCeEeeecCcccC
Confidence 9999999999995 3455566779999999999999999999999 9999999998887654
No 240
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.92 E-value=3.1e-25 Score=205.54 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=114.1
Q ss_pred EEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eEEEEc-CCCcc
Q 017797 102 CRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVD-TSNEI 163 (365)
Q Consensus 102 ~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-----------------~i~~i~-~~~ei 163 (365)
+.|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.++. +...+
T Consensus 29 ~~~~~~~i--l~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 106 (236)
T cd03267 29 RKYREVEA--LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQL 106 (236)
T ss_pred cccCCeee--eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCcccc
Confidence 45555555 99999999999999999999999999999999999876431 233433 21111
Q ss_pred cCCC-------------CCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH
Q 017797 164 GGDG-------------DIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (365)
Q Consensus 164 ~~~~-------------~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~ 215 (365)
.... ...... +. . ......+|+||+||++++++++.+|++|++|||++++|.
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 186 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 1000 000000 00 0 022345799999999999999999999999999999995
Q ss_pred -------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEec
Q 017797 216 -------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (365)
Q Consensus 216 -------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g 259 (365)
+.+.+++++ |.|||+++|+.+++..+||+++ ++++|++++.|
T Consensus 187 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~g 236 (236)
T cd03267 187 VAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVL--VIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEE--EEeCCEEEecC
Confidence 345555443 8999999999999999999999 89999987653
No 241
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=6.7e-25 Score=206.29 Aligned_cols=166 Identities=14% Similarity=0.107 Sum_probs=124.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC----CCCe-------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKR------------------- 153 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~----~~~~------------------- 153 (365)
++.++++|++..+ ++++++.+++|++++|+||||||||||+++|+|+++|. ..++
T Consensus 11 ~~~~~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 88 (261)
T PRK14263 11 CKLDKIFYGNFMA--VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVR 88 (261)
T ss_pred EEeEEEEeCCEEE--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhh
Confidence 5678888987666 99999999999999999999999999999999999751 1222
Q ss_pred --EEEEcCCCcccCC--------C----CCchh---hhh-hh--------------hhccCCCcchhHHHHHHHHHhhCC
Q 017797 154 --VVIVDTSNEIGGD--------G----DIPHS---AIG-TA--------------RRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 154 --i~~i~~~~ei~~~--------~----~~~~~---~~~-~~--------------~~~~~~S~g~~~r~~la~al~~~P 201 (365)
+.++.+...+... . ..... .+. .. .....+|+|++||+++++|++.+|
T Consensus 89 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p 168 (261)
T PRK14263 89 RYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEP 168 (261)
T ss_pred hceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 3343333221110 0 00000 000 00 112347999999999999999999
Q ss_pred CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHc--------CcEEEEecCHHHHHH
Q 017797 202 EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIG--------GVDTVTLGDEEARAR 266 (365)
Q Consensus 202 ~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~--------~g~iv~~g~~~~~~~ 266 (365)
++|++|||++++|. +.+.++. +|.|+|+++|+.+++..+||+++ +++ +|+++..|++++++.
T Consensus 169 ~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~d~v~--~l~~~~~~~~~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 169 EVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVADTTA--FFSVDISQGTRTGYLVEMGPTAQIFQ 245 (261)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEE--EEecccccccCCceEEEeCCHHHHHh
Confidence 99999999999995 3444443 47899999999999999999999 884 899999999998765
Q ss_pred h
Q 017797 267 R 267 (365)
Q Consensus 267 ~ 267 (365)
.
T Consensus 246 ~ 246 (261)
T PRK14263 246 N 246 (261)
T ss_pred C
Confidence 3
No 242
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.3e-25 Score=206.37 Aligned_cols=165 Identities=12% Similarity=0.144 Sum_probs=124.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC----CCCe-------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKR------------------- 153 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~----~~~~------------------- 153 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++.|. ..+.
T Consensus 19 ~~~l~~~~~~~~v--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~ 96 (265)
T PRK14252 19 VNKLNFYYGGYQA--LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIE 96 (265)
T ss_pred EEEEEEEECCeee--eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHH
Confidence 6699999987655 99999999999999999999999999999999998641 1222
Q ss_pred ----EEEEcCCCcccCC------------CCCch-----hhhhh---------------hhhccCCCcchhHHHHHHHHH
Q 017797 154 ----VVIVDTSNEIGGD------------GDIPH-----SAIGT---------------ARRMQVPEPSLQHKVMIEAVE 197 (365)
Q Consensus 154 ----i~~i~~~~ei~~~------------~~~~~-----~~~~~---------------~~~~~~~S~g~~~r~~la~al 197 (365)
+.++.+...+... ...+. ..+.. .+....+|+|++||+++++++
T Consensus 97 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 176 (265)
T PRK14252 97 VRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARAL 176 (265)
T ss_pred HhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHH
Confidence 3333332211100 00000 00000 012345799999999999999
Q ss_pred hhCCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 198 NHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 198 ~~~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
..+|++|++|||++++|.. .+.++.+ +.|||++||+.+++..+||+++ ++++|+++..|+.+++..
T Consensus 177 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 249 (265)
T PRK14252 177 ATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTA--YMYMGELIEFGATDTIFI 249 (265)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHh
Confidence 9999999999999999953 3444443 6899999999999989999999 999999999999988764
No 243
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.92 E-value=5.2e-25 Score=201.60 Aligned_cols=160 Identities=13% Similarity=0.190 Sum_probs=119.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+......++++++.+++|++++|+||||||||||+++|+|++.|+.| .++.+++
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 84 (221)
T cd03244 5 FKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIP 84 (221)
T ss_pred EEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEEC
Confidence 6689999975322249999999999999999999999999999999999987743 1244444
Q ss_pred CCCcccCC---------CCCchhhh-------hh---h------------hhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 159 TSNEIGGD---------GDIPHSAI-------GT---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~-------~~---~------------~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
+...+... .......+ +. . .....+|+||+||++++++++.+|++|++|
T Consensus 85 q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD 164 (221)
T cd03244 85 QDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLD 164 (221)
T ss_pred CCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 43322110 00000000 00 0 234568999999999999999999999999
Q ss_pred CCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecC
Q 017797 208 EIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (365)
Q Consensus 208 Ep~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~ 260 (365)
||++++|.. .++++. ++.|||+++|+.+++.. ||+++ ++++|+++..|+
T Consensus 165 EP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~i~--~l~~g~~~~~~~ 220 (221)
T cd03244 165 EATASVDPETDALIQKTIREAF-KDCTVLTIAHRLDTIID-SDRIL--VLDKGRVVEFDS 220 (221)
T ss_pred CccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhh-CCEEE--EEECCeEEecCC
Confidence 999999953 334433 46899999999998865 99999 899999987764
No 244
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.3e-25 Score=225.77 Aligned_cols=161 Identities=15% Similarity=0.143 Sum_probs=124.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------CeEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------------~~i~~i 157 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| .++.++
T Consensus 7 ~~~l~~~~~~~~i--l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v 84 (501)
T PRK11288 7 FDGIGKTFPGVKA--LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAII 84 (501)
T ss_pred EeeeEEEECCEEE--EeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEE
Confidence 6789999987655 9999999999999999999999999999999999987632 124455
Q ss_pred cCCCcccCC---------C------C-Cchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 158 DTSNEIGGD---------G------D-IPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 158 ~~~~ei~~~---------~------~-~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
.+...+... . . ..... +. . .+....+|+||+||+++|+++..+|++||+
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 164 (501)
T PRK11288 85 YQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAF 164 (501)
T ss_pred EechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 443221110 0 0 00000 00 0 123445799999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCH
Q 017797 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 261 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~ 261 (365)
||||+++|. +.+.++.+.|.|||++||+.+++..+||+++ ++++|+++..++.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~--~l~~G~i~~~~~~ 224 (501)
T PRK11288 165 DEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAIT--VFKDGRYVATFDD 224 (501)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEeecCc
Confidence 999999995 3455556679999999999999999999999 9999999876653
No 245
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.92 E-value=3.1e-25 Score=204.68 Aligned_cols=149 Identities=17% Similarity=0.206 Sum_probs=111.8
Q ss_pred hhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE--------------EEcCCCcccCCC-----------
Q 017797 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------IVDTSNEIGGDG----------- 167 (365)
Q Consensus 113 ~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~--------------~i~~~~ei~~~~----------- 167 (365)
+++++.+.+|++++|+||||||||||+++|+|+++|+.| .|. ++.+...+....
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSG-GVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 567889999999999999999999999999999988743 333 222222111100
Q ss_pred ----CCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHH
Q 017797 168 ----DIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSI 221 (365)
Q Consensus 168 ----~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~ 221 (365)
...... +. . .+....+|+||+||++++++++.+|++||+||||+++|. +.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 160 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQI 160 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence 000000 00 0 022345799999999999999999999999999999995 345555
Q ss_pred HH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 222 AE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 222 ~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
.+ .|.|||++||+.+++..+||+++ ++++|+++..|++.++
T Consensus 161 ~~~~~~tii~~sH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 161 WEEHRVTVLMVTHDVDEALLLSDRVV--MLTNGPAANIGQILEV 202 (230)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEE--EEeCCcEecccCceec
Confidence 44 48999999999999999999999 9999999988766544
No 246
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=209.12 Aligned_cols=166 Identities=18% Similarity=0.161 Sum_probs=125.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc-----cCCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~-----~~~~-------------------- 151 (365)
+++++++|+...+ ++++++.+.+|++++|+|||||||||||++|+|+++ |+.|
T Consensus 48 i~nl~~~~~~~~i--L~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~ 125 (305)
T PRK14264 48 VEDLDVYYGDDHA--LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELR 125 (305)
T ss_pred EEEEEEEeCCeee--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHh
Confidence 6689999987655 999999999999999999999999999999999985 2321
Q ss_pred CeEEEEcCCCcccCC-------CC-----------------Cc--h---hhhhh---------------hhhccCCCcch
Q 017797 152 KRVVIVDTSNEIGGD-------GD-----------------IP--H---SAIGT---------------ARRMQVPEPSL 187 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~-------~~-----------------~~--~---~~~~~---------------~~~~~~~S~g~ 187 (365)
..+.|+.+...+... .. .. . ..+.. ......+|+||
T Consensus 126 ~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 205 (305)
T PRK14264 126 KRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQ 205 (305)
T ss_pred hceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHH
Confidence 134555544321100 00 00 0 00000 01234579999
Q ss_pred hHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHH-HHHHHcCcEEEEec
Q 017797 188 QHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPI-LSDLIGGVDTVTLG 259 (365)
Q Consensus 188 ~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i-~~~ll~~g~iv~~g 259 (365)
+||+++++||+++|++||+|||++++|. +.++++.+ +.|||+++|+.+.+..+||++ + ++++|+++..|
T Consensus 206 ~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~--~l~~G~i~~~g 282 (305)
T PRK14264 206 QQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQTAV--FLTGGELVEYD 282 (305)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEE--EecCCEEEEeC
Confidence 9999999999999999999999999995 34455544 589999999999999999996 5 67999999999
Q ss_pred CHHHHHHh
Q 017797 260 DEEARARR 267 (365)
Q Consensus 260 ~~~~~~~~ 267 (365)
++++++..
T Consensus 283 ~~~~~~~~ 290 (305)
T PRK14264 283 DTDKIFEN 290 (305)
T ss_pred CHHHHHhC
Confidence 99887653
No 247
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.92 E-value=3.7e-25 Score=203.46 Aligned_cols=158 Identities=15% Similarity=0.225 Sum_probs=114.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
++++++.|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.++.
T Consensus 10 ~~~l~~~~~~~~i--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 87 (225)
T PRK10247 10 LQNVGYLAGDAKI--LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCA 87 (225)
T ss_pred EeccEEeeCCcee--eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEe
Confidence 6689999986655 9999999999999999999999999999999999987743 1233443
Q ss_pred CCCcccCC------------CCCc--hhhhh-h-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 159 TSNEIGGD------------GDIP--HSAIG-T-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 159 ~~~ei~~~------------~~~~--~~~~~-~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
+...+... .... ...+. . .+....+|+|++||++++++++.+|++||+||||++
T Consensus 88 q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 167 (225)
T PRK10247 88 QTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSA 167 (225)
T ss_pred cccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 33221110 0000 00000 0 022345799999999999999999999999999999
Q ss_pred HHHH-------HHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHc-CcEEEEec
Q 017797 213 AEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIG-GVDTVTLG 259 (365)
Q Consensus 213 ~d~~-------~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~-~g~iv~~g 259 (365)
+|.. .+.++.+ .|.|||+++|+.+++. .||+++ +++ ++..+..|
T Consensus 168 LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~--~l~~~~~~~~~~ 220 (225)
T PRK10247 168 LDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVI--TLQPHAGEMQEA 220 (225)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEE--EEecccchHhhh
Confidence 9953 3445544 4899999999999886 599988 663 44444443
No 248
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.92 E-value=6.5e-25 Score=229.91 Aligned_cols=168 Identities=14% Similarity=0.165 Sum_probs=132.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+...+..++++++.+++|+.++|+|+||||||||+|.|.|++.|..| +.|+++.
T Consensus 474 ~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~ 553 (709)
T COG2274 474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVL 553 (709)
T ss_pred EEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEc
Confidence 6799999998865669999999999999999999999999999999999999743 4567776
Q ss_pred CCCcccCC----------CCCchhhhhh----------------------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD----------GDIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------------------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+... ...+...+.. .+.-..+|||||||+++|||+.++|++|++
T Consensus 554 Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlL 633 (709)
T COG2274 554 QDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLL 633 (709)
T ss_pred ccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 65543211 0111001100 011223699999999999999999999999
Q ss_pred cCCCcHHHHH----HHHHHH--HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 207 DEIGTEAEAH----ACRSIA--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 207 DEp~~~~d~~----~i~~~~--~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
||||+.+|.+ ....+. ..|+|+|+++|..+.. ..||+++ ++++|+++.+|+.+++...
T Consensus 634 DEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti-~~adrIi--Vl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 634 DEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI-RSADRII--VLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred eCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHh-hhccEEE--EccCCceeccCCHHHHHHh
Confidence 9999999963 233333 3579999999999977 5799999 9999999999999998764
No 249
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.92 E-value=1e-24 Score=206.42 Aligned_cols=166 Identities=14% Similarity=0.118 Sum_probs=124.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|.......++++++.+++|++++|+||||||||||+++|+|++. ..| ..+.+++
T Consensus 5 ~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~ 83 (275)
T cd03289 5 VKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIP 83 (275)
T ss_pred EEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEEC
Confidence 679999995322234999999999999999999999999999999999986 322 1345554
Q ss_pred CCCcccCC---------CCCchhhhhh-h----------hhcc-----------CCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 159 TSNEIGGD---------GDIPHSAIGT-A----------RRMQ-----------VPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~~~-~----------~~~~-----------~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
+...+... .......+.. . .... .+|+||+|++++++|++.+|++|++|
T Consensus 84 q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlD 163 (275)
T cd03289 84 QKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 163 (275)
T ss_pred CCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 44322110 0011111000 0 1111 28999999999999999999999999
Q ss_pred CCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 208 EIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 208 Ep~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|||+++|.. .+... ..|+|||+++|+.+.+.. ||+++ +|++|+++..|+|+++...
T Consensus 164 Epts~LD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~-~dri~--vl~~G~i~~~g~~~~l~~~ 226 (275)
T cd03289 164 EPSAHLDPITYQVIRKTLKQA-FADCTVILSEHRIEAMLE-CQRFL--VIEENKVRQYDSIQKLLNE 226 (275)
T ss_pred CccccCCHHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHh-CCEEE--EecCCeEeecCCHHHHhhC
Confidence 999999963 23332 348999999999998864 99999 9999999999999998764
No 250
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=6.4e-25 Score=200.42 Aligned_cols=148 Identities=15% Similarity=0.166 Sum_probs=112.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------eEEEEcCCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------RVVIVDTSN 161 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~---------------~i~~i~~~~ 161 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.++.+..
T Consensus 14 ~~~l~~~~~~~~i--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~ 91 (214)
T PRK13543 14 AHALAFSRNEEPV--FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLP 91 (214)
T ss_pred EeeEEEecCCcee--eecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCc
Confidence 6799999977655 99999999999999999999999999999999999887431 144444332
Q ss_pred cccCCCCCch--------------hhhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-
Q 017797 162 EIGGDGDIPH--------------SAIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA- 215 (365)
Q Consensus 162 ei~~~~~~~~--------------~~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~- 215 (365)
.+.....+.. .... . ......+|+|++||++++++++.+|++|++|||++++|.
T Consensus 92 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 171 (214)
T PRK13543 92 GLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171 (214)
T ss_pred ccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 2211000000 0000 0 122345799999999999999999999999999999995
Q ss_pred ------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 216 ------HACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 216 ------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
+.+.++.++|.|||+++|+.+++..+|++++
T Consensus 172 ~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~ 208 (214)
T PRK13543 172 GITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRML 208 (214)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEE
Confidence 3455556678999999999999999998876
No 251
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.92 E-value=1.3e-24 Score=224.71 Aligned_cols=165 Identities=13% Similarity=0.156 Sum_probs=127.2
Q ss_pred eeeEEEEEC-CcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCcccCC--
Q 017797 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGD-- 166 (365)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------~~i~~i~~~~ei~~~-- 166 (365)
+++++++|+ ...+ ++++++.+.+|++++|+|||||||||||++|+|++.|+.| .+++++++...+...
T Consensus 9 i~~l~~~y~~~~~i--l~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~t 86 (556)
T PRK11819 9 MNRVSKVVPPKKQI--LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKT 86 (556)
T ss_pred EeeEEEEeCCCCee--eeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCc
Confidence 779999998 5555 9999999999999999999999999999999999988643 246677665432110
Q ss_pred ------CCCch---------------------------------------------hhhh----------hhhhccCCCc
Q 017797 167 ------GDIPH---------------------------------------------SAIG----------TARRMQVPEP 185 (365)
Q Consensus 167 ------~~~~~---------------------------------------------~~~~----------~~~~~~~~S~ 185 (365)
..... ..+. ..+....+|+
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSg 166 (556)
T PRK11819 87 VRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSG 166 (556)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCH
Confidence 00000 0000 0123456899
Q ss_pred chhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHH----HHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEE-EecC
Q 017797 186 SLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV-TLGD 260 (365)
Q Consensus 186 g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~----~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv-~~g~ 260 (365)
||+||+++|+++..+|++||+||||+++|...... +.+.+.|||++||+.+++..+||+++ ++++|+++ ..|+
T Consensus 167 Gqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~--~l~~g~i~~~~g~ 244 (556)
T PRK11819 167 GERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWIL--ELDRGRGIPWEGN 244 (556)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEE--EEeCCEEEEecCC
Confidence 99999999999999999999999999999754332 23445699999999999999999999 99999986 6688
Q ss_pred HHHHH
Q 017797 261 EEARA 265 (365)
Q Consensus 261 ~~~~~ 265 (365)
.++..
T Consensus 245 ~~~~~ 249 (556)
T PRK11819 245 YSSWL 249 (556)
T ss_pred HHHHH
Confidence 77643
No 252
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=202.84 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=125.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc--c---CCC--------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--D---EFQ-------------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~--~---~~~-------------------- 151 (365)
++++++.|+...+ ++++++.+.+|++++|+||||||||||+++|+|+.. | +.|
T Consensus 6 ~~~v~~~~~~~~~--l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14266 6 VENLNTYFDDAHI--LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELR 83 (250)
T ss_pred EEeEEEEeCCeEE--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHh
Confidence 6689999986555 999999999999999999999999999999999864 2 311
Q ss_pred CeEEEEcCCCcccCC------------CCC-chhhh-----------hh--------hhhccCCCcchhHHHHHHHHHhh
Q 017797 152 KRVVIVDTSNEIGGD------------GDI-PHSAI-----------GT--------ARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~------------~~~-~~~~~-----------~~--------~~~~~~~S~g~~~r~~la~al~~ 199 (365)
.++.|+.+...+... ... ..... +. ......+|+|++||+++++|++.
T Consensus 84 ~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~ 163 (250)
T PRK14266 84 KKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAV 163 (250)
T ss_pred hheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence 124444433221110 000 00000 00 01234579999999999999999
Q ss_pred CCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|++|++|||++++|.. .+.++. +|.|||+++|+.+++..+|++++ ++++|+++..|+++++...
T Consensus 164 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~~~~i~--~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14266 164 SPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQATRVSKYTS--FFLNGEIIESGLTDQIFIN 235 (250)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHHhhcCEEE--EEECCeEEEeCCHHHHHhC
Confidence 99999999999999953 344443 48999999999999999999999 8999999999999887643
No 253
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.92 E-value=1.4e-24 Score=196.37 Aligned_cols=148 Identities=19% Similarity=0.180 Sum_probs=109.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eEEEEcC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDT 159 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-----------------~i~~i~~ 159 (365)
+++++++|+.... ++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.++++
T Consensus 3 i~~l~~~~~~~~~--l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 3 ADELTCERDGRAL--FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred EEEEEEEeCCcee--eccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 6789999987665 99999999999999999999999999999999999887431 2233332
Q ss_pred CCcccCCCCC-----------chhhhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH--
Q 017797 160 SNEIGGDGDI-----------PHSAIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-- 215 (365)
Q Consensus 160 ~~ei~~~~~~-----------~~~~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-- 215 (365)
...+.....+ ....+.. .+....+|+|++||+++|+|++.+|++||+|||++++|.
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~ 160 (201)
T cd03231 81 APGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAG 160 (201)
T ss_pred ccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 2211100000 0000000 022345799999999999999999999999999999995
Q ss_pred -----HHHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 216 -----HACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 216 -----~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
+.+.++.+.|.|+|+++|+.......|++++
T Consensus 161 ~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~ 196 (201)
T cd03231 161 VARFAEAMAGHCARGGMVVLTTHQDLGLSEAGAREL 196 (201)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeE
Confidence 3444555668999999999877777787766
No 254
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.91 E-value=1.4e-24 Score=203.52 Aligned_cols=166 Identities=13% Similarity=0.070 Sum_probs=124.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+......++++++.+++|++++|+||||||||||+++|+|+++|..| ..+.++.
T Consensus 22 ~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~ 101 (257)
T cd03288 22 IHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIIL 101 (257)
T ss_pred EEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEEC
Confidence 6689999976322349999999999999999999999999999999999987643 1244444
Q ss_pred CCCcccCC------CC---Cchhhhh-------h---h------------hhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 159 TSNEIGGD------GD---IPHSAIG-------T---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 159 ~~~ei~~~------~~---~~~~~~~-------~---~------------~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
+...+... .. ....... . . .....+|+|++||+++|+|++.+|++||+|
T Consensus 102 q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 181 (257)
T cd03288 102 QDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMD 181 (257)
T ss_pred CCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 43322110 00 0000000 0 0 112368999999999999999999999999
Q ss_pred CCCcHHHHHH-------HHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 208 EIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 208 Ep~~~~d~~~-------i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||++++|... +..+ .+|.|||+++|+.+.... ||+++ ++++|+++..|+++++..
T Consensus 182 EPt~gLD~~~~~~l~~~l~~~-~~~~tiii~sh~~~~~~~-~dri~--~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 182 EATASIDMATENILQKVVMTA-FADRTVVTIAHRVSTILD-ADLVL--VLSRGILVECDTPENLLA 243 (257)
T ss_pred CCccCCCHHHHHHHHHHHHHh-cCCCEEEEEecChHHHHh-CCEEE--EEECCEEEEeCCHHHHHh
Confidence 9999999632 2222 348999999999998875 99999 999999999999888764
No 255
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=9.2e-25 Score=197.72 Aligned_cols=154 Identities=11% Similarity=0.084 Sum_probs=114.7
Q ss_pred eeeEEEEECCcc---cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCCcccCC--
Q 017797 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD-- 166 (365)
Q Consensus 97 i~~l~~r~~~~~---~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----~~i~~i~~~~ei~~~-- 166 (365)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+.+|+.| +++.++.+...+...
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~ 82 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTI 82 (204)
T ss_pred EeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcH
Confidence 678999997641 1249999999999999999999999999999999999988754 235676665432210
Q ss_pred -------CCCchhhh-------hh---h------------hhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHH
Q 017797 167 -------GDIPHSAI-------GT---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 217 (365)
Q Consensus 167 -------~~~~~~~~-------~~---~------------~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~ 217 (365)
........ +. . .....+|+|++||++++++++.+|+++++|||++++|...
T Consensus 83 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 162 (204)
T cd03250 83 RENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162 (204)
T ss_pred HHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 01111000 00 0 1234579999999999999999999999999999998532
Q ss_pred ---H-----HHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCc
Q 017797 218 ---C-----RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 253 (365)
Q Consensus 218 ---i-----~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g 253 (365)
+ ....+.|.|||+++|+.+.+.. ||+++ ++++|
T Consensus 163 ~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~--~l~~G 203 (204)
T cd03250 163 GRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIV--VLDNG 203 (204)
T ss_pred HHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEE--EEeCC
Confidence 2 2233458999999999998876 99888 77665
No 256
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=1.1e-24 Score=197.25 Aligned_cols=146 Identities=19% Similarity=0.165 Sum_probs=107.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE------------------EEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------------------IVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~------------------~i~ 158 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+. +.|. ++.
T Consensus 4 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~-G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 4 ARNLACERDERIL--FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDA-GEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred EEEEEEEECCEEE--EecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEECCEEcccchHHhhhheEEeC
Confidence 6789999987655 999999999999999999999999999999999998874 3333 222
Q ss_pred CCCcccCCCCCc--------------hhhhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHH
Q 017797 159 TSNEIGGDGDIP--------------HSAIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (365)
Q Consensus 159 ~~~ei~~~~~~~--------------~~~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~ 213 (365)
+...+.....+. ...+. . .+....+|+|++||+++++|++++|+++++||||+++
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 160 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAI 160 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 221111000000 00000 0 1233457999999999999999999999999999999
Q ss_pred HH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHH
Q 017797 214 EA-------HACRSIAERGVMLIGTAHGEWLENIIKNPI 245 (365)
Q Consensus 214 d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i 245 (365)
|. +.+.+++++|.|||++||+.+++.....++
T Consensus 161 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 199 (204)
T PRK13538 161 DKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRK 199 (204)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceE
Confidence 95 345555566899999999999887654433
No 257
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.91 E-value=1.3e-24 Score=223.25 Aligned_cols=167 Identities=21% Similarity=0.230 Sum_probs=125.4
Q ss_pred eeeEEEEECC---cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE-----------------
Q 017797 97 IVGLTCRVGR---AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI----------------- 156 (365)
Q Consensus 97 i~~l~~r~~~---~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~----------------- 156 (365)
+++++++|.. .....++++++.+++|++++|+||||||||||+++|+|+++|+. +.|.+
T Consensus 282 ~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~-G~i~~~~g~~~~~~~~~~~~~~ 360 (520)
T TIGR03269 282 VRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS-GEVNVRVGDEWVDMTKPGPDGR 360 (520)
T ss_pred EeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-eEEEEecCCccccccccchhhH
Confidence 6789999952 11123899999999999999999999999999999999998763 33433
Q ss_pred ---------EcCCCcccCCC------------CCchh----hh-------hh---------hhhccCCCcchhHHHHHHH
Q 017797 157 ---------VDTSNEIGGDG------------DIPHS----AI-------GT---------ARRMQVPEPSLQHKVMIEA 195 (365)
Q Consensus 157 ---------i~~~~ei~~~~------------~~~~~----~~-------~~---------~~~~~~~S~g~~~r~~la~ 195 (365)
+++...+.... ..+.. .+ +. .+....+|+||+||+++|+
T Consensus 361 ~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~lar 440 (520)
T TIGR03269 361 GRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQ 440 (520)
T ss_pred HHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHH
Confidence 22221111000 00100 00 00 1223467999999999999
Q ss_pred HHhhCCCEEEEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 196 VENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 196 al~~~P~vlilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|++.+|++||+||||+++|+ +.+.++++ .|.|||++||+.+++..+||+++ ++++|+++..|++++++.
T Consensus 441 al~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 441 VLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAA--LMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHh
Confidence 99999999999999999995 34555544 48999999999999999999999 999999999998887653
No 258
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.9e-24 Score=222.42 Aligned_cols=166 Identities=19% Similarity=0.230 Sum_probs=128.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCc--ccCC-
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNE--IGGD- 166 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------~~i~~i~~~~e--i~~~- 166 (365)
+++++++|++..+ ++++++.+.+|++++|+||||||||||+++|+|++.|+.| .++.|+++... +...
T Consensus 322 ~~~l~~~~~~~~~--l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~ 399 (530)
T PRK15064 322 VENLTKGFDNGPL--FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDL 399 (530)
T ss_pred EEeeEEeeCCcee--ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCC
Confidence 7799999987655 9999999999999999999999999999999999988743 24667766432 2110
Q ss_pred ------CCC-----chhhh-------hh-----hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHH---
Q 017797 167 ------GDI-----PHSAI-------GT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS--- 220 (365)
Q Consensus 167 ------~~~-----~~~~~-------~~-----~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~--- 220 (365)
... ....+ +. .+....+|+||+||+++|++++.+|++||+||||+++|......
T Consensus 400 t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 479 (530)
T PRK15064 400 TLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM 479 (530)
T ss_pred cHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 000 00000 00 12356679999999999999999999999999999999643222
Q ss_pred -HHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEE-EecCHHHHHH
Q 017797 221 -IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV-TLGDEEARAR 266 (365)
Q Consensus 221 -~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv-~~g~~~~~~~ 266 (365)
+.+.+.|||++||+.+++..+||+++ ++++|+++ ..|+++++..
T Consensus 480 ~l~~~~~tvi~vsHd~~~~~~~~d~i~--~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 480 ALEKYEGTLIFVSHDREFVSSLATRII--EITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEE--EEECCeEEEcCCCHHHHHH
Confidence 23335699999999999999999999 99999987 7788877653
No 259
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.91 E-value=2.1e-24 Score=198.09 Aligned_cols=149 Identities=17% Similarity=0.201 Sum_probs=109.5
Q ss_pred eeeEEEEECCc-----ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE---------------
Q 017797 97 IVGLTCRVGRA-----VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--------------- 156 (365)
Q Consensus 97 i~~l~~r~~~~-----~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~--------------- 156 (365)
+++++++|+.. ....++++++.+.+|++++|+||||||||||+++|+|+++|+. +.|.+
T Consensus 4 ~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~-G~i~~~~~g~~~~~~~~~~~ 82 (224)
T TIGR02324 4 VEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDS-GRILVRHEGAWVDLAQASPR 82 (224)
T ss_pred EEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CeEEEecCCCccchhhcCHH
Confidence 67899999631 1124999999999999999999999999999999999998763 33333
Q ss_pred ------------EcCCCcccCC-------------CCCchhh----h-------h--h---hhhccCCCcchhHHHHHHH
Q 017797 157 ------------VDTSNEIGGD-------------GDIPHSA----I-------G--T---ARRMQVPEPSLQHKVMIEA 195 (365)
Q Consensus 157 ------------i~~~~ei~~~-------------~~~~~~~----~-------~--~---~~~~~~~S~g~~~r~~la~ 195 (365)
+++...+... ....... + + . ......+|+|++||+++++
T Consensus 83 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~lar 162 (224)
T TIGR02324 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIAR 162 (224)
T ss_pred HHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHH
Confidence 2222111100 0000000 0 0 0 0123457999999999999
Q ss_pred HHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 196 VENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 196 al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
|+..+|++|++|||++++|. +.+..+.++|.|||+++|+.+++..+||+++
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~ 220 (224)
T TIGR02324 163 GFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVM 220 (224)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeE
Confidence 99999999999999999995 3455555679999999999998888898876
No 260
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.91 E-value=1.2e-24 Score=223.77 Aligned_cols=168 Identities=15% Similarity=0.200 Sum_probs=126.8
Q ss_pred eeeEEEEECCc---------ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------
Q 017797 97 IVGLTCRVGRA---------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------- 151 (365)
Q Consensus 97 i~~l~~r~~~~---------~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~---------------- 151 (365)
+++++++|+.. ....++++++.+++|++++|+||||||||||+++|+|+++ +.|
T Consensus 278 ~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~ 356 (529)
T PRK15134 278 VEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQ 356 (529)
T ss_pred ccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhh
Confidence 67899999521 1124899999999999999999999999999999999985 311
Q ss_pred -----CeEEEEcCCCc--ccCC-------------C--CCchh----hh-------hh-----hhhccCCCcchhHHHHH
Q 017797 152 -----KRVVIVDTSNE--IGGD-------------G--DIPHS----AI-------GT-----ARRMQVPEPSLQHKVMI 193 (365)
Q Consensus 152 -----~~i~~i~~~~e--i~~~-------------~--~~~~~----~~-------~~-----~~~~~~~S~g~~~r~~l 193 (365)
.++.++++... +... . ..+.. .+ +. .+....+|+||+||+++
T Consensus 357 ~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~l 436 (529)
T PRK15134 357 LLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAI 436 (529)
T ss_pred HHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHH
Confidence 12455544321 1100 0 01100 00 00 12345679999999999
Q ss_pred HHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHH
Q 017797 194 EAVENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (365)
Q Consensus 194 a~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~ 265 (365)
|+|++.+|++||+||||+++|+ +.+.+++++ |.|||++||+++++..+||+++ ++++|+++..|++++++
T Consensus 437 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 437 ARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVI--VLRQGEVVEQGDCERVF 514 (529)
T ss_pred HHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEE--EEECCEEEEEcCHHHHh
Confidence 9999999999999999999995 345555554 8999999999999999999999 99999999999998886
Q ss_pred Hh
Q 017797 266 RR 267 (365)
Q Consensus 266 ~~ 267 (365)
..
T Consensus 515 ~~ 516 (529)
T PRK15134 515 AA 516 (529)
T ss_pred cC
Confidence 53
No 261
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.91 E-value=9.8e-25 Score=203.65 Aligned_cols=160 Identities=13% Similarity=0.178 Sum_probs=120.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCe-------------------EEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-------------------VVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~-------------------i~~i 157 (365)
++++++. . .++++++.+.+|++++|+||||||||||+++|+|++++ .+. +.++
T Consensus 3 ~~~l~~~----~--~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~--~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 3 LNDVAVS----T--RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG--SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred ccccchh----c--eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CeEEEECCEecCcCCHHHHhhheEEe
Confidence 4466664 1 38999999999999999999999999999999999854 222 3444
Q ss_pred cCCCcccCC------------CCCchh----hhh-------h----hhhccCCCcchhHHHHHHHHHhh-------CCCE
Q 017797 158 DTSNEIGGD------------GDIPHS----AIG-------T----ARRMQVPEPSLQHKVMIEAVENH-------MPEV 203 (365)
Q Consensus 158 ~~~~ei~~~------------~~~~~~----~~~-------~----~~~~~~~S~g~~~r~~la~al~~-------~P~v 203 (365)
.+...+... ...... .+. . .+....+|+||+||+++++|++. +|++
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~l 154 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQL 154 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCE
Confidence 433211100 000000 000 0 12345579999999999999997 6799
Q ss_pred EEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 204 IIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 204 lilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||+|||++++|. +.+..+.++|.|||+++|+.+++..+||+++ ++++|+++..|+++++..
T Consensus 155 lllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 155 LLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVW--LLKQGKLLASGRRDEVLT 222 (248)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEECCHHHHhC
Confidence 999999999995 3455556678999999999999999999999 999999999998887653
No 262
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.91 E-value=2.5e-24 Score=222.56 Aligned_cols=166 Identities=13% Similarity=0.151 Sum_probs=127.6
Q ss_pred eeeEEEEEC-CcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCcccCC--
Q 017797 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGD-- 166 (365)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------~~i~~i~~~~ei~~~-- 166 (365)
+++++++|+ ...+ ++++++.+++|++++|+|||||||||||++|+|++.|+.| ..+.++++...+...
T Consensus 7 ~~nls~~~~~~~~i--l~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~t 84 (552)
T TIGR03719 7 MNRVSKVVPPKKEI--LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKT 84 (552)
T ss_pred EeeEEEecCCCCee--ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCc
Confidence 779999997 5545 9999999999999999999999999999999999988743 246677665432111
Q ss_pred ------CCCc-------------------hhh--------------------------h-------h---hhhhccCCCc
Q 017797 167 ------GDIP-------------------HSA--------------------------I-------G---TARRMQVPEP 185 (365)
Q Consensus 167 ------~~~~-------------------~~~--------------------------~-------~---~~~~~~~~S~ 185 (365)
.... ... + + ....+..+|+
T Consensus 85 v~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSg 164 (552)
T TIGR03719 85 VRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSG 164 (552)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCH
Confidence 0000 000 0 0 0123456799
Q ss_pred chhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHH----HHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEE-EecC
Q 017797 186 SLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV-TLGD 260 (365)
Q Consensus 186 g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~----~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv-~~g~ 260 (365)
||+||++++++++.+|++||+||||+++|..... .+.+.+.+||++||+.+++..+||+++ ++++|+++ ..|+
T Consensus 165 Gqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~--~l~~g~i~~~~g~ 242 (552)
T TIGR03719 165 GERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWIL--ELDRGRGIPWEGN 242 (552)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEE--EEECCEEEEecCC
Confidence 9999999999999999999999999999964332 233446799999999999999999999 99999976 6688
Q ss_pred HHHHHH
Q 017797 261 EEARAR 266 (365)
Q Consensus 261 ~~~~~~ 266 (365)
.++...
T Consensus 243 ~~~~~~ 248 (552)
T TIGR03719 243 YSSWLE 248 (552)
T ss_pred HHHHHH
Confidence 876543
No 263
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=99.91 E-value=6.8e-23 Score=200.12 Aligned_cols=227 Identities=19% Similarity=0.217 Sum_probs=163.2
Q ss_pred CHHHHHHHhcccCCCCeEEEEEecCCceEEEEeCccCceecCCCCCCHHHHHHHHHHHh------c----cCCCeeeEec
Q 017797 12 PSDLRDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVG------E----FGGDNRAGIE 81 (365)
Q Consensus 12 p~~i~~~l~~~~~~~~~~ei~l~~g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~~------~----~~~~~~~~~~ 81 (365)
|..+.+.|..+.. .++||||+..|.|+.+|++|.+. .....++++++++.++..+. + ...++++.+.
T Consensus 3 ~~~~~~ll~~a~~-~~aSDIhi~~~~~i~~ri~G~l~--~~~~~~l~~~~~~~li~~l~~~~~~~~~~~~~di~~~~~~~ 79 (358)
T TIGR02524 3 PKFIDDLLEHAER-LGASDITIQTGEAIFAEVYGRLL--KITNRELSNAELGDLINAIYGPNATTQILRGEDIDTHYEFR 79 (358)
T ss_pred hHHHHHHHHHHHH-CCCcEEEEECCCceEEEECCEEE--EecCCCCCHHHHHHHHHHHhhHHHHHHHHhCCCcccccccc
Confidence 5667777776554 78999999999999999999875 55556789999888776551 1 2344444331
Q ss_pred ---C-c-eEEEEEEEe----cCCceeeEEEEECCcccCcchhhh------hcc-cCCcEEEEEcCCCCcHHHHHHHHHhc
Q 017797 82 ---G-T-LHRISAIRS----RKGAIVGLTCRVGRAVSGHIDMVY------DLL-HYGKSILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 82 ---g-~-~~rv~~~~~----~~~~i~~l~~r~~~~~~~~~~~l~------~~l-~~g~~v~iiGpnGsGKTTllr~l~gl 145 (365)
| . ++|+|.+.. .+|. .+++|.....+..++.+. ..+ .++++++|+|||||||||+|++|++.
T Consensus 80 ~~~~~~~~~Rv~~~~~~~~~~~g~--~~vlR~l~~~~~~l~~l~~~~~~~~~~~~~~glilI~GpTGSGKTTtL~aLl~~ 157 (358)
T TIGR02524 80 PNRGERFRYRINATACHVDGHDAI--QITIRAIPAEPPKLSKLDLPAAIIDAIAPQEGIVFITGATGSGKSTLLAAIIRE 157 (358)
T ss_pred cCCCCeEEEEEEeEecccCCCCce--EEEEEecCCCCCCHHHcCCCHHHHHHHhccCCEEEEECCCCCCHHHHHHHHHHH
Confidence 2 2 589998863 3466 899999765552233222 223 47899999999999999999999999
Q ss_pred cccC--CCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHH
Q 017797 146 LSDE--FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAE 223 (365)
Q Consensus 146 l~~~--~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~ 223 (365)
+++. .+++|++++++.|+.... +.. ......+..+......+..++..+|+++||+|+++|+++.+.+..+..+++
T Consensus 158 i~~~~~~~~~Ivt~EdpiE~~~~~-~~~-~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd~i~vGEiRd~et~~~al~aa~ 235 (358)
T TIGR02524 158 LAEAPDSHRKILTYEAPIEFVYDE-IET-ISASVCQSEIPRHLNNFAAGVRNALRRKPHAILVGEARDAETISAALEAAL 235 (358)
T ss_pred HhhcCCCCcEEEEeCCCceEeccc-ccc-ccceeeeeeccccccCHHHHHHHHhccCCCEEeeeeeCCHHHHHHHHHHHH
Confidence 9643 346899999998864321 100 000111222222334567788889999999999999999999988889999
Q ss_pred cCcEEEEEEcCcchhHHhhhHHH
Q 017797 224 RGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 224 ~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
+||.|+.|.|..+....+. +++
T Consensus 236 tGh~v~tTlHa~~~~~~i~-Rl~ 257 (358)
T TIGR02524 236 TGHPVYTTLHSSGVAETIR-RLV 257 (358)
T ss_pred cCCcEEEeeccCCHHHHHH-HHH
Confidence 9999999999999776544 444
No 264
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=99.91 E-value=6.7e-23 Score=199.88 Aligned_cols=211 Identities=19% Similarity=0.268 Sum_probs=155.8
Q ss_pred CCeEEEEEecCCceEEEEeCccCceecCCCCCCHHHHHHHHHHHhc------cC--C--CeeeEecCc-eEEEEEEEecC
Q 017797 26 GQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGE------FG--G--DNRAGIEGT-LHRISAIRSRK 94 (365)
Q Consensus 26 ~~~~ei~l~~g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~~~------~~--~--~~~~~~~g~-~~rv~~~~~~~ 94 (365)
.++||||+..+.++.+|++|.+. .....+++.+++..++..+.. +. + ++++.+++. ++|++.+...+
T Consensus 12 ~~aSDIhi~~~~~v~~R~~G~l~--~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~r~R~~~~~~~~ 89 (343)
T TIGR01420 12 NGASDIHLTAGSPPAMRIDGDLV--RIEFEPLTPEDTQKLLREILSEKQREEFEENGELDFSYSLPGVSRFRVNAFKQRG 89 (343)
T ss_pred CCCcEEEEECCCeEEEEECCEEE--EcCCCCCCHHHHHHHHHHHhHHHHHhhhcccCcEEEEEEcCCCcEEEEEEeecCC
Confidence 67999999999999999999864 555567899999887765521 11 2 233344443 79999999888
Q ss_pred CceeeEEEEECCccc------Ccchhhhhcc-cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCC
Q 017797 95 GAIVGLTCRVGRAVS------GHIDMVYDLL-HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG 167 (365)
Q Consensus 95 ~~i~~l~~r~~~~~~------~~~~~l~~~l-~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~ 167 (365)
|. .+++|...... +..+.+...+ .++++++|.||+||||||+|+++++.+++..+++|.+++++.|+....
T Consensus 90 g~--~~viR~~~~~~~~l~~lg~~~~l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~ 167 (343)
T TIGR01420 90 GV--ALVLRLIPSKIPTFEELGLPPVLRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRN 167 (343)
T ss_pred Ce--EEEEEcCCCCCCCHHHcCCCHHHHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccC
Confidence 88 89999866433 2222222233 467899999999999999999999988765568899999988874321
Q ss_pred CCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 168 DIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 168 ~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
.. ....+.++.........+++++|+++||+|++||+++.+.+..+..++.+|++|+.|.|..+.... .++++
T Consensus 168 ~~-----~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vgEird~~~~~~~l~aa~tGh~v~~T~Ha~~~~~~-~~Rl~ 240 (343)
T TIGR01420 168 KR-----SLINQREVGLDTLSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTLHTNSAAQT-IERII 240 (343)
T ss_pred cc-----ceEEccccCCCCcCHHHHHHHhhccCCCEEEEeCCCCHHHHHHHHHHHHcCCcEEEEEcCCCHHHH-HHHHH
Confidence 10 001112222233456678999999999999999999998888878888999999999999997754 56666
No 265
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.91 E-value=2.5e-24 Score=228.78 Aligned_cols=167 Identities=19% Similarity=0.178 Sum_probs=129.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+......++++++.+++|+.++|+||||||||||+++|+|++.|+.| +++.+++
T Consensus 480 ~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 559 (710)
T TIGR03796 480 LRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVD 559 (710)
T ss_pred EEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEe
Confidence 6799999986433359999999999999999999999999999999999998743 2455666
Q ss_pred CCCcccCC----------CCCchhhhhh----------------------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD----------GDIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------------------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+... .......+.. .+.-..+|+||+||+++|||+..+|++|++
T Consensus 560 Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliL 639 (710)
T TIGR03796 560 QDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILIL 639 (710)
T ss_pred cCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 55433210 0111111100 011234799999999999999999999999
Q ss_pred cCCCcHHHHH----HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEAH----ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~~----~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||||+++|.+ ....+.+.+.|+|+++|..+... .||+++ ++++|+++..|+.+++..
T Consensus 640 DEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~-~~D~Ii--vl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 640 DEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIR-DCDEII--VLERGKVVQRGTHEELWA 700 (710)
T ss_pred ECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEE--EEeCCEEEEecCHHHHHH
Confidence 9999999963 33444567899999999999775 599999 999999999999998875
No 266
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.91 E-value=1.4e-24 Score=198.93 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=114.3
Q ss_pred eeeEEEEECCcc--cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------------Ce
Q 017797 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------------KR 153 (365)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~---------------------~~ 153 (365)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+++|+.| ..
T Consensus 4 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (220)
T TIGR02982 4 IRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRN 83 (220)
T ss_pred EEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhh
Confidence 568999986521 1249999999999999999999999999999999999987633 12
Q ss_pred EEEEcCCCcccCCCC--------------Cchh----hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEE
Q 017797 154 VVIVDTSNEIGGDGD--------------IPHS----AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (365)
Q Consensus 154 i~~i~~~~ei~~~~~--------------~~~~----~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vl 204 (365)
+.++++...+..... .... .+.. ......+|+|++||++++++++.+|++|
T Consensus 84 i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~il 163 (220)
T TIGR02982 84 IGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLV 163 (220)
T ss_pred eEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 344443322211000 0000 0000 0223456999999999999999999999
Q ss_pred EEcCCCcHHHHH-------HHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEE
Q 017797 205 IVDEIGTEAEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 255 (365)
Q Consensus 205 ilDEp~~~~d~~-------~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~i 255 (365)
++|||++++|.+ .+..+.+ .|.|||+++|+++.. .+||+++ ++++|++
T Consensus 164 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~--~l~~g~~ 219 (220)
T TIGR02982 164 LADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIV--HMEDGKL 219 (220)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEE--EEECCEE
Confidence 999999999953 4555554 589999999999865 6899999 8888875
No 267
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=2.1e-24 Score=195.72 Aligned_cols=157 Identities=14% Similarity=0.225 Sum_probs=122.8
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC---ccc--CC---------------CCCc
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN---EIG--GD---------------GDIP 170 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~---ei~--~~---------------~~~~ 170 (365)
++++++|.+.+|+.++|+|+||||||||||.|+|.++|+.| +|.+-..-. +++ +. .++.
T Consensus 42 aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G-~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~ 120 (249)
T COG1134 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG-KVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLT 120 (249)
T ss_pred EecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc-eEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCcc
Confidence 48999999999999999999999999999999999999954 333221111 110 00 0111
Q ss_pred hhhh-------------hh--hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEE
Q 017797 171 HSAI-------------GT--ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVML 228 (365)
Q Consensus 171 ~~~~-------------~~--~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tV 228 (365)
...+ +. ...+..+|.||+.|++++.|...+||+||+||..+--|. +.+.++.+++.|+
T Consensus 121 ~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~ti 200 (249)
T COG1134 121 RKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTI 200 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEE
Confidence 1110 00 144566799999999999999999999999999886664 4566666888999
Q ss_pred EEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchH
Q 017797 229 IGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQK 270 (365)
Q Consensus 229 i~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~ 270 (365)
++++|+++.+..+||+++ ++++|++...|+++++......
T Consensus 201 v~VSHd~~~I~~~Cd~~i--~l~~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 201 VLVSHDLGAIKQYCDRAI--WLEHGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred EEEECCHHHHHHhcCeeE--EEeCCEEEEcCCHHHHHHHHHH
Confidence 999999999999999999 9999999999999999875433
No 268
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2e-24 Score=226.38 Aligned_cols=165 Identities=16% Similarity=0.251 Sum_probs=127.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------eEEEEcCCC-c-ccCCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSN-E-IGGDG 167 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------~i~~i~~~~-e-i~~~~ 167 (365)
+++++++|+...+ ++++++.+.+|++++|+|||||||||||++|+|+++|+.|. +++|+++.. . +....
T Consensus 315 ~~~l~~~y~~~~i--l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~ 392 (638)
T PRK10636 315 MEKVSAGYGDRII--LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADE 392 (638)
T ss_pred EEeeEEEeCCeee--eccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccc
Confidence 6789999987665 99999999999999999999999999999999999887432 456666642 1 11100
Q ss_pred C-------C-ch---hhh-------h-----hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHH----
Q 017797 168 D-------I-PH---SAI-------G-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS---- 220 (365)
Q Consensus 168 ~-------~-~~---~~~-------~-----~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~---- 220 (365)
. . +. ..+ + ..+.+..+|+|++||++||++++.+|++|||||||+++|+.....
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~ 472 (638)
T PRK10636 393 SPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEA 472 (638)
T ss_pred hHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 0 0 00 000 0 012456789999999999999999999999999999999643222
Q ss_pred HHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEE-EecCHHHHH
Q 017797 221 IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV-TLGDEEARA 265 (365)
Q Consensus 221 ~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv-~~g~~~~~~ 265 (365)
+.+-+.|||++||+.+++..+||+++ ++++|+++ +.|+.++..
T Consensus 473 L~~~~gtvi~vSHd~~~~~~~~d~i~--~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 473 LIDFEGALVVVSHDRHLLRSTTDDLY--LVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HHHcCCeEEEEeCCHHHHHHhCCEEE--EEECCEEEEcCCCHHHHH
Confidence 22334599999999999999999999 99999987 678888763
No 269
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.1e-24 Score=187.45 Aligned_cols=147 Identities=22% Similarity=0.332 Sum_probs=110.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCc-hhhhh
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIP-HSAIG 175 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~-~~~~~ 175 (365)
+++++++|....+ ++++++.+.+|++++|+||||||||||+++|+|++++. .+++. ++... +....... ...+.
T Consensus 2 ~~~~~~~~~~~~~--l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~-~G~i~-~~~~~-~~~~~~~~~~~~i~ 76 (157)
T cd00267 2 IENLSFRYGGRTA--LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEIL-IDGKD-IAKLPLEELRRRIG 76 (157)
T ss_pred eEEEEEEeCCeee--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEE-ECCEE-cccCCHHHHHhceE
Confidence 5688999976655 99999999999999999999999999999999999886 44553 33311 10000000 00011
Q ss_pred hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHH
Q 017797 176 TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSD 248 (365)
Q Consensus 176 ~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ 248 (365)
. ...+|+|+++|++++++++.+|+++++|||++++|. +.+..+.+.|.++++++|+.++...+||+++
T Consensus 77 ~---~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~-- 151 (157)
T cd00267 77 Y---VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVI-- 151 (157)
T ss_pred E---EeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--
Confidence 0 111899999999999999999999999999999995 3444445557899999999999988888887
Q ss_pred HHcCc
Q 017797 249 LIGGV 253 (365)
Q Consensus 249 ll~~g 253 (365)
.+.+|
T Consensus 152 ~l~~g 156 (157)
T cd00267 152 VLKDG 156 (157)
T ss_pred EEeCc
Confidence 65554
No 270
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=4.8e-24 Score=181.63 Aligned_cols=163 Identities=16% Similarity=0.218 Sum_probs=128.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccC-----------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG----------- 165 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~----------- 165 (365)
++++++-||.... +-++++..+.|+-+.++||+|+|||||+|.|.-+.-|.+| ...+-...-.+..
T Consensus 5 v~~in~~yg~~q~--lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg-~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 5 LNGINCFYGAHQA--LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSG-TLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred Ecccccccccchh--eeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCC-eEEecccccccccCccHHHHHHHH
Confidence 6689999999888 9999999999999999999999999999999988887743 2222221111100
Q ss_pred ---------CCCCchhhhh------------------------hhh----------hccCCCcchhHHHHHHHHHhhCCC
Q 017797 166 ---------DGDIPHSAIG------------------------TAR----------RMQVPEPSLQHKVMIEAVENHMPE 202 (365)
Q Consensus 166 ---------~~~~~~~~~~------------------------~~~----------~~~~~S~g~~~r~~la~al~~~P~ 202 (365)
...+|+..+. ..+ ..--+|||++||+++|+||.+.|+
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq 161 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence 0112221110 001 112359999999999999999999
Q ss_pred EEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 203 VIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 203 vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
||++||||..+|+ .+++++.++|+|-++++|..+.+...+.+++ .|++|++|..|+.+..
T Consensus 162 vllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vv--yme~g~ive~g~a~~f 228 (242)
T COG4161 162 VLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVV--YMENGHIVEQGDASCF 228 (242)
T ss_pred EEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheE--eeecCeeEeecchhhc
Confidence 9999999999996 4688899999999999999999999999999 8999999999988764
No 271
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.1e-24 Score=223.05 Aligned_cols=164 Identities=14% Similarity=0.084 Sum_probs=124.8
Q ss_pred eeeEEEEEC---CcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc-CCC-------------------Ce
Q 017797 97 IVGLTCRVG---RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-EFQ-------------------KR 153 (365)
Q Consensus 97 i~~l~~r~~---~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~-~~~-------------------~~ 153 (365)
+++++++|+ ...+ ++++++.+++|++++|+||||||||||+++|+|+++| +.| ..
T Consensus 262 ~~~l~~~~~~~~~~~v--l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 339 (506)
T PRK13549 262 VRNLTAWDPVNPHIKR--VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQG 339 (506)
T ss_pred EecCcccccccccccc--ccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCC
Confidence 668888884 2234 8999999999999999999999999999999999873 421 12
Q ss_pred EEEEcCCCc---ccCC---------C---CC------chh----hhh-------h-----hhhccCCCcchhHHHHHHHH
Q 017797 154 VVIVDTSNE---IGGD---------G---DI------PHS----AIG-------T-----ARRMQVPEPSLQHKVMIEAV 196 (365)
Q Consensus 154 i~~i~~~~e---i~~~---------~---~~------~~~----~~~-------~-----~~~~~~~S~g~~~r~~la~a 196 (365)
+.|+++... +... . .+ ... .+. . .+....+|+||+||+++|+|
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~a 419 (506)
T PRK13549 340 IAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKC 419 (506)
T ss_pred CEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHH
Confidence 455554321 1100 0 00 000 000 0 12245679999999999999
Q ss_pred HhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 197 ENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 197 l~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
++.+|++||+||||+++|+ +.+..++++|.|||++||+.+++..+||+++ ++++|+++..|+++++
T Consensus 420 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~--~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 420 LLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVL--VMHEGKLKGDLINHNL 492 (506)
T ss_pred HhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEeccccC
Confidence 9999999999999999995 3456666779999999999999999999999 9999999998887764
No 272
>PLN03211 ABC transporter G-25; Provisional
Probab=99.91 E-value=4e-24 Score=224.36 Aligned_cols=166 Identities=16% Similarity=0.193 Sum_probs=128.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC--CC--------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE--FQ--------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~--~~--------------~~i~~i~~~ 160 (365)
+++++++|+.+.+ ++++++.+++|++++|+|||||||||||++|+|.+.++ .| +++.++.+.
T Consensus 71 ~~~l~~~~~~~~i--L~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 71 ISDETRQIQERTI--LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred cccccccCCCCee--eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence 5578888987766 99999999999999999999999999999999998763 11 235566554
Q ss_pred CcccCC------------C----CCchhh----hhh------h----------hhccCCCcchhHHHHHHHHHhhCCCEE
Q 017797 161 NEIGGD------------G----DIPHSA----IGT------A----------RRMQVPEPSLQHKVMIEAVENHMPEVI 204 (365)
Q Consensus 161 ~ei~~~------------~----~~~~~~----~~~------~----------~~~~~~S~g~~~r~~la~al~~~P~vl 204 (365)
..+... . ...... +.. . .....+|+||+||+++|++|+.+|++|
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 332110 0 011100 000 0 012347999999999999999999999
Q ss_pred EEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcc-hhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 205 IVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEW-LENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 205 ilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~-~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++||||+++|. +.+++++++|.|||+|+|+.+ .+..++|+++ ++++|+++..|+++++..
T Consensus 229 lLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~ii--lL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 229 ILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVL--VLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEE--EecCCcEEEECCHHHHHH
Confidence 99999999995 456666678999999999998 4778899999 999999999999988754
No 273
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.91 E-value=9.6e-24 Score=214.66 Aligned_cols=163 Identities=18% Similarity=0.268 Sum_probs=129.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCcccCCCCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGDGDI 169 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------~~i~~i~~~~ei~~~~~~ 169 (365)
++++++.|+.... ++++++.+.+|+.++|+|+|||||||||++|+|.+.|+.| .++.++.+.........+
T Consensus 6 ~~~ls~~~g~~~l--~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv 83 (530)
T COG0488 6 LENLSLAYGDRPL--LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTV 83 (530)
T ss_pred EeeeEEeeCCcee--ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccH
Confidence 6799999988888 9999999999999999999999999999999999988743 267777765443321000
Q ss_pred ch-----------------------------------------------hhh-------h--h-hhhccCCCcchhHHHH
Q 017797 170 PH-----------------------------------------------SAI-------G--T-ARRMQVPEPSLQHKVM 192 (365)
Q Consensus 170 ~~-----------------------------------------------~~~-------~--~-~~~~~~~S~g~~~r~~ 192 (365)
.. ..+ + . .+.+..+|||++.|++
T Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~ 163 (530)
T COG0488 84 LDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVA 163 (530)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHH
Confidence 00 000 0 0 1345668999999999
Q ss_pred HHHHHhhCCCEEEEcCCCcHHHHHHHHHH----HH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEe-cCHHHH
Q 017797 193 IEAVENHMPEVIIVDEIGTEAEAHACRSI----AE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEAR 264 (365)
Q Consensus 193 la~al~~~P~vlilDEp~~~~d~~~i~~~----~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~-g~~~~~ 264 (365)
||++|..+||+|+|||||+.+|.+.+..+ .+ .| |||++|||..+.+.+|++++ -++.|++..+ |+-+..
T Consensus 164 LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~--~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 164 LARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHIL--ELDRGKLTPYKGNYSSY 238 (530)
T ss_pred HHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheE--EecCCceeEecCCHHHH
Confidence 99999999999999999999998877665 23 46 99999999999999999999 7888887655 555443
No 274
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.91 E-value=5.6e-24 Score=195.46 Aligned_cols=146 Identities=18% Similarity=0.249 Sum_probs=112.0
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------CeEEEEcCCCcccCC--CC--------------
Q 017797 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------KRVVIVDTSNEIGGD--GD-------------- 168 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------~~i~~i~~~~ei~~~--~~-------------- 168 (365)
.+++|++++|+||||||||||+++|+|+++|+.| .++.|+++...+... ..
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 81 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG 81 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccc
Confidence 4789999999999999999999999999987743 235666554332100 00
Q ss_pred -C--ch-h---hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHH
Q 017797 169 -I--PH-S---AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAE 223 (365)
Q Consensus 169 -~--~~-~---~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~ 223 (365)
. +. . .+.. ......+|+||+||++++++++.+|++||+|||++++|. +.+.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~ 161 (223)
T TIGR03771 82 WLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG 161 (223)
T ss_pred cccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 00 0 0000 023345799999999999999999999999999999995 34555566
Q ss_pred cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 224 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 224 ~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+|.|||++||+.+++..+||+++ ++ +|+++..|+++++..
T Consensus 162 ~~~tvii~sH~~~~~~~~~d~i~--~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 162 AGTAILMTTHDLAQAMATCDRVV--LL-NGRVIADGTPQQLQD 201 (223)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEE--EE-CCEEEeecCHHHhcC
Confidence 79999999999999989999999 77 699999999888754
No 275
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.91 E-value=4.3e-24 Score=226.14 Aligned_cols=167 Identities=16% Similarity=0.154 Sum_probs=128.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|.......++++++.+++|+.++|+||||||||||++.|+|++.|+.| .++.+++
T Consensus 454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 533 (686)
T TIGR03797 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVL 533 (686)
T ss_pred EEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEc
Confidence 6799999964333359999999999999999999999999999999999998743 2455565
Q ss_pred CCCcccCC---------CCCchhhhhhh----------------------hhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 159 TSNEIGGD---------GDIPHSAIGTA----------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~~~~----------------------~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
+...+... .......+... ..-..+|+||+||+++|||+..+|++|++|
T Consensus 534 Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLD 613 (686)
T TIGR03797 534 QNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD 613 (686)
T ss_pred cCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 55443210 00111111000 111346999999999999999999999999
Q ss_pred CCCcHHHHH----HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 208 EIGTEAEAH----ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 208 Ep~~~~d~~----~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|||+++|.+ ....+.+.+.|+|+++|..+... .+|+++ ++++|++++.|+.+++..
T Consensus 614 EpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~-~~D~Ii--vl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 614 EATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIR-NADRIY--VLDAGRVVQQGTYDELMA 673 (686)
T ss_pred CCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHH-cCCEEE--EEECCEEEEECCHHHHHh
Confidence 999999963 23334444789999999998775 599999 999999999999998765
No 276
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.90 E-value=1.2e-23 Score=199.73 Aligned_cols=163 Identities=11% Similarity=0.023 Sum_probs=122.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCCcccCC-----
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD----- 166 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----~~i~~i~~~~ei~~~----- 166 (365)
+++++++ ...+ ++++++.+.+|++++|+||||||||||+++|+|+++|..| +++.|+++...+...
T Consensus 42 i~nls~~--~~~v--L~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~en 117 (282)
T cd03291 42 FSNLCLV--GAPV--LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKEN 117 (282)
T ss_pred EEEEEEe--cccc--eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHH
Confidence 4567664 2334 8999999999999999999999999999999999988744 246667665433211
Q ss_pred ---C-CCchhh----h---hh---h------------hhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHH---
Q 017797 167 ---G-DIPHSA----I---GT---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 217 (365)
Q Consensus 167 ---~-~~~~~~----~---~~---~------------~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~--- 217 (365)
. ...... . +. . .....+|+|++||+++|++++.+|+++|+|||++++|+..
T Consensus 118 l~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~ 197 (282)
T cd03291 118 IIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKE 197 (282)
T ss_pred hhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 0 000000 0 00 0 0124689999999999999999999999999999999632
Q ss_pred HHH-H---HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 218 CRS-I---AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 218 i~~-~---~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+.. + ..+|.+||+++|+.+... .||+++ ++++|+++..|+++++..
T Consensus 198 l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 198 IFESCVCKLMANKTRILVTSKMEHLK-KADKIL--ILHEGSSYFYGTFSELQS 247 (282)
T ss_pred HHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEE--EEECCEEEEECCHHHHHh
Confidence 211 1 234789999999999875 799999 999999999999988764
No 277
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=9.5e-24 Score=190.65 Aligned_cols=144 Identities=16% Similarity=0.154 Sum_probs=106.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeE------------------EEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV------------------VIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i------------------~~i~ 158 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| .| .+++
T Consensus 4 ~~~l~~~~~~~~i--l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 4 VIELDFDYHDQPL--LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKG-EILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEeCCeeE--EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-eEEECCCccccCHHHHHhheEEec
Confidence 6789999987655 9999999999999999999999999999999999988743 33 2332
Q ss_pred CCCcccCCCCCchh------------hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH
Q 017797 159 TSNEIGGDGDIPHS------------AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (365)
Q Consensus 159 ~~~ei~~~~~~~~~------------~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~ 215 (365)
+...+.....+.++ .+. . .+....+|+|++||++++++++.+|++||+|||++++|.
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~ 160 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE 160 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 22111100000000 000 0 022345799999999999999999999999999999995
Q ss_pred -------HHHHHHHHcCcEEEEEEcCcchhHHhhhH
Q 017797 216 -------HACRSIAERGVMLIGTAHGEWLENIIKNP 244 (365)
Q Consensus 216 -------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~ 244 (365)
+.+.++.+.|.|+|+++|+.+..+. ||.
T Consensus 161 ~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~ 195 (200)
T PRK13540 161 LSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADY 195 (200)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cch
Confidence 3455555679999999999887754 554
No 278
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.90 E-value=2.3e-24 Score=198.13 Aligned_cols=154 Identities=19% Similarity=0.196 Sum_probs=112.8
Q ss_pred eeeEEEEECCcc-cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEE
Q 017797 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i 157 (365)
+++++++|+... ...++++++.+.+|++++|+||||||||||+++|+|+++|+.| .++.++
T Consensus 14 ~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 93 (226)
T cd03248 14 FQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLV 93 (226)
T ss_pred EEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEE
Confidence 679999997521 1249999999999999999999999999999999999987743 124444
Q ss_pred cCCCcccCC----------CCCchhh----------------h--hh----hhhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 158 DTSNEIGGD----------GDIPHSA----------------I--GT----ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 158 ~~~~ei~~~----------~~~~~~~----------------~--~~----~~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
++...+... ....... + +. ......+|+|++||++++++++.+|++||
T Consensus 94 ~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 173 (226)
T cd03248 94 GQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLI 173 (226)
T ss_pred ecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 443221100 0000000 0 00 12234579999999999999999999999
Q ss_pred EcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcE
Q 017797 206 VDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 254 (365)
Q Consensus 206 lDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~ 254 (365)
+|||++++|.. .+.++.+ +.|+|++||+.+++.. ||+++ ++++|+
T Consensus 174 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~--~l~~g~ 225 (226)
T cd03248 174 LDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVER-ADQIL--VLDGGR 225 (226)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHh-CCEEE--EecCCc
Confidence 99999999953 3444433 6899999999998864 99998 777765
No 279
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.90 E-value=9e-24 Score=190.44 Aligned_cols=138 Identities=18% Similarity=0.241 Sum_probs=102.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eEEEEcC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDT 159 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-----------------~i~~i~~ 159 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.++++
T Consensus 3 ~~~l~~~~~~~~~--l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 3 ARNLACSRGERML--FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred EEEEEEEECCEEE--EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 5689999987666 99999999999999999999999999999999999877431 2333433
Q ss_pred CCcccCCCCCc-------------hhhhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH
Q 017797 160 SNEIGGDGDIP-------------HSAIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (365)
Q Consensus 160 ~~ei~~~~~~~-------------~~~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~ 215 (365)
...+.....+. ...+.. ......+|+|++||+++++|++.+|++|++|||++++|.
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 160 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160 (198)
T ss_pred CcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 22211000000 000000 023345799999999999999999999999999999995
Q ss_pred -------HHHHHHHHcCcEEEEEEcCcc
Q 017797 216 -------HACRSIAERGVMLIGTAHGEW 236 (365)
Q Consensus 216 -------~~i~~~~~~G~tVi~t~H~~~ 236 (365)
+.+..+.++|.|+|+++|+..
T Consensus 161 ~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 161 AGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 345555667999999999875
No 280
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.90 E-value=3.1e-24 Score=213.98 Aligned_cols=160 Identities=19% Similarity=0.186 Sum_probs=127.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD------------------ 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~------------------ 158 (365)
+++++|+|+...+ ++++++.+.+|++++|+|.||||||||+++|+|.++|+.| .|.+-.
T Consensus 11 ~~~i~K~FggV~A--L~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G-~I~~~G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 11 LRGISKSFGGVKA--LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG-EILIDGKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred eecceEEcCCcee--eccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCc-eEEECCEEccCCCHHHHHhCCcEE
Confidence 6689999999887 9999999999999999999999999999999999999843 333322
Q ss_pred --CCCcccC---------CCCCchh--------hhh---------------hhhhccCCCcchhHHHHHHHHHhhCCCEE
Q 017797 159 --TSNEIGG---------DGDIPHS--------AIG---------------TARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (365)
Q Consensus 159 --~~~ei~~---------~~~~~~~--------~~~---------------~~~~~~~~S~g~~~r~~la~al~~~P~vl 204 (365)
|...+.. .+..|.. ... ....+..+|.+++|.+.||+|+..++++|
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arll 167 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVL 167 (500)
T ss_pred EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1111100 0111110 000 01234456999999999999999999999
Q ss_pred EEcCCCcHHH-------HHHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCH
Q 017797 205 IVDEIGTEAE-------AHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 261 (365)
Q Consensus 205 ilDEp~~~~d-------~~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~ 261 (365)
|+||||+.++ ++.++.++++|++||++||.++++..+||++. +|.+|+.|...+.
T Consensus 168 IlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Drit--VlRDG~~v~~~~~ 229 (500)
T COG1129 168 ILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRIT--VLRDGRVVGTRPT 229 (500)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEE--EEeCCEEeeeccc
Confidence 9999999766 35788889999999999999999999999999 9999999988763
No 281
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.90 E-value=1.8e-23 Score=200.33 Aligned_cols=160 Identities=17% Similarity=0.224 Sum_probs=126.1
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc-c--------------cC----CCCCch
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-I--------------GG----DGDIPH 171 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~e-i--------------~~----~~~~~~ 171 (365)
+++++++.+.+|+.++|+|.+|||||||-++|.+++++. +.|.|..++.. + .+ .+.-|.
T Consensus 302 AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~--G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR 379 (534)
T COG4172 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ--GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred EeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC--ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence 489999999999999999999999999999999999875 44544432211 0 00 000111
Q ss_pred hhhh------------------------------------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH
Q 017797 172 SAIG------------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (365)
Q Consensus 172 ~~~~------------------------------------~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~ 215 (365)
..++ ..+.....||||+||++||+|+..+|++|++||||+.+|.
T Consensus 380 mtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~ 459 (534)
T COG4172 380 MTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR 459 (534)
T ss_pred cCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence 1110 0133455699999999999999999999999999999994
Q ss_pred -------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchHHHHH
Q 017797 216 -------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILE 274 (365)
Q Consensus 216 -------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~~~~~ 274 (365)
++++.+.+ .|.+-++++||+..+.++|++++ +|.+|++|+.|+.++++.+|+.....
T Consensus 460 SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~vi--Vm~~GkiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 460 SVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVI--VMRDGKIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEE--EEeCCEEeeeCCHHHHhcCCCcHHHH
Confidence 56677754 48999999999999999999999 99999999999999999887655443
No 282
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.90 E-value=6.1e-24 Score=194.31 Aligned_cols=153 Identities=10% Similarity=0.086 Sum_probs=111.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------------CeE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------KRV 154 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------------~~i 154 (365)
+++++++|+... ..++++++.+.+|++++|+|||||||||||++|+|+++|+.| ..+
T Consensus 3 ~~~~~~~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 3 VTNGYFSWGSGL-ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeEEecCCCC-cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 678999997542 349999999999999999999999999999999999987632 123
Q ss_pred EEEcCCCcccCC---------CCCchhhhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCE
Q 017797 155 VIVDTSNEIGGD---------GDIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEV 203 (365)
Q Consensus 155 ~~i~~~~ei~~~---------~~~~~~~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~v 203 (365)
.++.+...+... .......... . .....+|+|++||+++|++++.+|++
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~i 161 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNI 161 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 344333221100 0000000000 0 12356899999999999999999999
Q ss_pred EEEcCCCcHHHHH---------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCc
Q 017797 204 IIVDEIGTEAEAH---------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 253 (365)
Q Consensus 204 lilDEp~~~~d~~---------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g 253 (365)
||+|||++++|.. .+..+.+.|.|+|+++|+.+.+. .||+++ ++++|
T Consensus 162 lllDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~--~l~~G 217 (218)
T cd03290 162 VFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWII--AMKDG 217 (218)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEE--EecCC
Confidence 9999999999963 22334456899999999999875 588887 66654
No 283
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7.6e-24 Score=222.08 Aligned_cols=165 Identities=16% Similarity=0.182 Sum_probs=124.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------eEEEEcCCC-cccCC--
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSN-EIGGD-- 166 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------~i~~i~~~~-ei~~~-- 166 (365)
+++++++|+...+ ++++++.+.+|+.++|+||||||||||||+|+|++.|+.|. .+.++++.. .....
T Consensus 4 i~nls~~~g~~~~--l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~ 81 (638)
T PRK10636 4 FSSLQIRRGVRVL--LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPAL 81 (638)
T ss_pred EEEEEEEeCCcee--ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHH
Confidence 6799999998776 99999999999999999999999999999999999887432 233444311 10000
Q ss_pred CCCch----------------------------------------hhh-------hh-----hhhccCCCcchhHHHHHH
Q 017797 167 GDIPH----------------------------------------SAI-------GT-----ARRMQVPEPSLQHKVMIE 194 (365)
Q Consensus 167 ~~~~~----------------------------------------~~~-------~~-----~~~~~~~S~g~~~r~~la 194 (365)
..+++ ..+ +. .+.+..+|+|++||++||
T Consensus 82 ~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA 161 (638)
T PRK10636 82 EYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLA 161 (638)
T ss_pred HHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHH
Confidence 00000 000 00 023445799999999999
Q ss_pred HHHhhCCCEEEEcCCCcHHHHHHHHHH----HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEE-ecCHHHHH
Q 017797 195 AVENHMPEVIIVDEIGTEAEAHACRSI----AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT-LGDEEARA 265 (365)
Q Consensus 195 ~al~~~P~vlilDEp~~~~d~~~i~~~----~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~-~g~~~~~~ 265 (365)
++|+.+|++|||||||+++|+.....+ .+.+.+||++||+.+++..+||+++ ++++|+++. .|+.+...
T Consensus 162 ~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~--~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 162 QALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKII--HIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred HHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEE--EEeCCEEEEecCCHHHHH
Confidence 999999999999999999997543332 3447899999999999999999999 999999874 46665543
No 284
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.90 E-value=1.2e-23 Score=191.97 Aligned_cols=152 Identities=13% Similarity=0.051 Sum_probs=112.7
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC-------CcccCC-------------CCCch
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-------NEIGGD-------------GDIPH 171 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~-------~ei~~~-------------~~~~~ 171 (365)
++++++.+++|++++|+||||||||||+++|+|+++|+.| .|..++.. ..+... .....
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG-~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEG-DFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCC-CEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 7889999999999999999999999999999999988854 44312211 001000 00100
Q ss_pred hhhh------------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHH---HHH-HH--HcCcEEEEEEc
Q 017797 172 SAIG------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CRS-IA--ERGVMLIGTAH 233 (365)
Q Consensus 172 ~~~~------------~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~---i~~-~~--~~G~tVi~t~H 233 (365)
.... .......+|+||+||+++++|++.+|+++++|||++++|... +.. +. .++.++|+++|
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH 161 (213)
T PRK15177 82 DEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTH 161 (213)
T ss_pred HHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEEC
Confidence 0000 012345679999999999999999999999999998878532 111 11 13568999999
Q ss_pred CcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 234 GEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 234 ~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+++.+..+||+++ ++++|+++..++.++..+
T Consensus 162 ~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 162 NPRLIKEHCHAFG--VLLHGKITMCEDLAQATA 192 (213)
T ss_pred CHHHHHHhcCeeE--EEECCeEEEeCCHHHHHH
Confidence 9999989999999 999999999999888754
No 285
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.3e-23 Score=184.03 Aligned_cols=163 Identities=14% Similarity=0.120 Sum_probs=120.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE--------------EEcCCCc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------IVDTSNE 162 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~--------------~i~~~~e 162 (365)
+++++..|......++++++..+.+|+.+.++||+||||||||+.++|+..|..+ .|. ++.++..
T Consensus 6 ~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G-~i~l~~r~i~gPgaergvVFQ~~~ 84 (259)
T COG4525 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRG-SIQLNGRRIEGPGAERGVVFQNEA 84 (259)
T ss_pred hhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccc-eEEECCEeccCCCccceeEeccCc
Confidence 5688999987764469999999999999999999999999999999999998732 222 1222211
Q ss_pred ccCC-------------CCCchhhhh-h--------------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHH
Q 017797 163 IGGD-------------GDIPHSAIG-T--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (365)
Q Consensus 163 i~~~-------------~~~~~~~~~-~--------------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d 214 (365)
+... .+++..... . .+.+-.+|+||+||+.+|+||..+|++|++|||++.+|
T Consensus 85 LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlD 164 (259)
T COG4525 85 LLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALD 164 (259)
T ss_pred cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHH
Confidence 1100 111111000 0 02234569999999999999999999999999999999
Q ss_pred H-------HHHH-HHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcC--cEEEEecCHH
Q 017797 215 A-------HACR-SIAERGVMLIGTAHGEWLENIIKNPILSDLIGG--VDTVTLGDEE 262 (365)
Q Consensus 215 ~-------~~i~-~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~--g~iv~~g~~~ 262 (365)
. +++. -+.++|+.++++||+.+++--++++++ ++.. |++|..-+++
T Consensus 165 a~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLv--vlsp~pgRvv~~~~~d 220 (259)
T COG4525 165 ALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLV--VLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeE--EecCCCceeeEecCCC
Confidence 4 2333 346789999999999999988999988 7764 6787664443
No 286
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=1.4e-23 Score=190.63 Aligned_cols=145 Identities=19% Similarity=0.205 Sum_probs=106.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE----------------EcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI----------------VDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~----------------i~~~ 160 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++.|+. +.|.+ +.+.
T Consensus 5 ~~~l~~~~~~~~~--l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 5 GEDLACVRGGRVL--FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA-GTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEeEEEEECCeEE--EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEeCcchhhHhhcEEecCC
Confidence 6799999987655 999999999999999999999999999999999998774 33332 2211
Q ss_pred CcccCCCCCchh-------------hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-
Q 017797 161 NEIGGDGDIPHS-------------AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA- 215 (365)
Q Consensus 161 ~ei~~~~~~~~~-------------~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~- 215 (365)
..+.....+.++ .+. . ......+|+||+||++++++++.+|++|++|||++++|.
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 161 (207)
T PRK13539 82 NAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161 (207)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 111000000000 000 0 022345799999999999999999999999999999995
Q ss_pred ------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 216 ------HACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 216 ------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
+.+.+++++|.|||+++|+.+++.. ++++
T Consensus 162 ~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~ 196 (207)
T PRK13539 162 AVALFAELIRAHLAQGGIVIAATHIPLGLPG--AREL 196 (207)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEE
Confidence 3455556679999999999987764 4444
No 287
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.6e-24 Score=218.63 Aligned_cols=159 Identities=17% Similarity=0.138 Sum_probs=120.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------CeEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------------~~i~~i 157 (365)
+++++++|. . .++++++.+++|++++|+||||||||||+++|+|+++|+.| .++.|+
T Consensus 268 ~~~l~~~~~--~--~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v 343 (510)
T PRK09700 268 VRNVTSRDR--K--KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYI 343 (510)
T ss_pred EeCccccCC--C--cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEc
Confidence 556666542 2 38999999999999999999999999999999999987632 124555
Q ss_pred cCCC---cccCC---------C-C-----------C-chh----hhh-------h-----hhhccCCCcchhHHHHHHHH
Q 017797 158 DTSN---EIGGD---------G-D-----------I-PHS----AIG-------T-----ARRMQVPEPSLQHKVMIEAV 196 (365)
Q Consensus 158 ~~~~---ei~~~---------~-~-----------~-~~~----~~~-------~-----~~~~~~~S~g~~~r~~la~a 196 (365)
++.. .+... . . . ... .+. . .+....+|+||+||+++|++
T Consensus 344 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAra 423 (510)
T PRK09700 344 TESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKW 423 (510)
T ss_pred cCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHH
Confidence 5531 11100 0 0 0 000 000 0 02234579999999999999
Q ss_pred HhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCH
Q 017797 197 ENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 261 (365)
Q Consensus 197 l~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~ 261 (365)
++.+|++||+||||+++|. +.+.++++.|.|||++||+.+++..+||+++ ++++|+++..++.
T Consensus 424 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~--~l~~G~i~~~~~~ 493 (510)
T PRK09700 424 LCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIA--VFCEGRLTQILTN 493 (510)
T ss_pred HhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEE--EEECCEEEEEecC
Confidence 9999999999999999995 4556666779999999999999999999999 9999999887755
No 288
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.90 E-value=3.7e-24 Score=218.80 Aligned_cols=162 Identities=19% Similarity=0.150 Sum_probs=121.5
Q ss_pred eeeEEEEEC---CcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc-CCC-------------------Ce
Q 017797 97 IVGLTCRVG---RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-EFQ-------------------KR 153 (365)
Q Consensus 97 i~~l~~r~~---~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~-~~~-------------------~~ 153 (365)
+++++++|+ ...+ ++++++.+.+|++++|+||||||||||+++|+|+++| +.| .+
T Consensus 260 ~~~l~~~~~~~~~~~~--l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (500)
T TIGR02633 260 ARNLTCWDVINPHRKR--VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337 (500)
T ss_pred EeCCcccccccccccc--cccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 567888773 2334 8999999999999999999999999999999999974 321 12
Q ss_pred EEEEcCCCc---ccC---------CC---------CCchh----hhh-------h-----hhhccCCCcchhHHHHHHHH
Q 017797 154 VVIVDTSNE---IGG---------DG---------DIPHS----AIG-------T-----ARRMQVPEPSLQHKVMIEAV 196 (365)
Q Consensus 154 i~~i~~~~e---i~~---------~~---------~~~~~----~~~-------~-----~~~~~~~S~g~~~r~~la~a 196 (365)
+.++++... +.. .. .+... .+. . .+....+|+||+||+++|++
T Consensus 338 i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~a 417 (500)
T TIGR02633 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKM 417 (500)
T ss_pred CEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHH
Confidence 444444321 100 00 00000 000 0 02234679999999999999
Q ss_pred HhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHH
Q 017797 197 ENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEE 262 (365)
Q Consensus 197 l~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~ 262 (365)
++.+|++||+||||+++|. +.+..++++|.|||++||+.+++..+||+++ ++++|+++...+.+
T Consensus 418 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~--~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 418 LLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVL--VIGEGKLKGDFVNH 488 (500)
T ss_pred HhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEEccc
Confidence 9999999999999999995 3456666779999999999999999999999 99999998876543
No 289
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.90 E-value=1.2e-23 Score=220.69 Aligned_cols=164 Identities=15% Similarity=0.158 Sum_probs=123.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE--------EEcCCCcccCCCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------IVDTSNEIGGDGD 168 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~--------~i~~~~ei~~~~~ 168 (365)
+++++++|+...+ ++++++.+.+|+.++|+|||||||||||++|+|++.|+. +.|. ++++.........
T Consensus 6 i~~ls~~~~~~~i--l~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~-G~I~~~~~~~~~~l~q~~~~~~~~~ 82 (635)
T PRK11147 6 IHGAWLSFSDAPL--LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDD-GRIIYEQDLIVARLQQDPPRNVEGT 82 (635)
T ss_pred EeeEEEEeCCcee--EeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC-eEEEeCCCCEEEEeccCCCCCCCCC
Confidence 6799999987666 999999999999999999999999999999999998874 3332 2222110000000
Q ss_pred Cch---------------------------------------------------hhhh---------hhhhccCCCcchh
Q 017797 169 IPH---------------------------------------------------SAIG---------TARRMQVPEPSLQ 188 (365)
Q Consensus 169 ~~~---------------------------------------------------~~~~---------~~~~~~~~S~g~~ 188 (365)
+.+ ..+. ..+.+..+|+|++
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGek 162 (635)
T PRK11147 83 VYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWL 162 (635)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHH
Confidence 000 0000 0123456799999
Q ss_pred HHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHH----HHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEE-ecCHHH
Q 017797 189 HKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT-LGDEEA 263 (365)
Q Consensus 189 ~r~~la~al~~~P~vlilDEp~~~~d~~~i~~----~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~-~g~~~~ 263 (365)
||++||++|+.+|++||+||||+++|+..... +.+-+.+||++||+..++..+||+++ .+++|+++. .|+.+.
T Consensus 163 qRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~--~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 163 RKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIV--DLDRGKLVSYPGNYDQ 240 (635)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEE--EEECCEEEEecCCHHH
Confidence 99999999999999999999999999754332 23445699999999999999999999 899999875 477665
Q ss_pred HH
Q 017797 264 RA 265 (365)
Q Consensus 264 ~~ 265 (365)
..
T Consensus 241 ~~ 242 (635)
T PRK11147 241 YL 242 (635)
T ss_pred HH
Confidence 43
No 290
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.90 E-value=1.8e-23 Score=215.90 Aligned_cols=166 Identities=14% Similarity=0.200 Sum_probs=125.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|.......++++++.+++|+.++|+||||||||||+++|+|+++|+.| ..+.+++
T Consensus 319 ~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 398 (544)
T TIGR01842 319 VENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLP 398 (544)
T ss_pred EEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEec
Confidence 6789999964322349999999999999999999999999999999999988743 1345555
Q ss_pred CCCcccCC----------CCCchhhhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD----------GDIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+... .......+.. . +....+|+||+||+++|||+..+|++||+
T Consensus 399 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ilil 478 (544)
T TIGR01842 399 QDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVL 478 (544)
T ss_pred CCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 54332110 0011111100 0 12235799999999999999999999999
Q ss_pred cCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHH
Q 017797 207 DEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (365)
Q Consensus 207 DEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~ 265 (365)
||||+++|.+ .+..+...|.|+|+++|..+..+ .||+++ .+++|+++..|+++++.
T Consensus 479 DEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 479 DEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKIL--VLQDGRIARFGERDEVL 541 (544)
T ss_pred eCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEE--EEECCEEEeeCCHHHHh
Confidence 9999999953 33344446899999999998664 699999 99999999999988764
No 291
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.90 E-value=1e-23 Score=219.20 Aligned_cols=168 Identities=15% Similarity=0.183 Sum_probs=126.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|.......++++++.+++|+.++|+||||||||||+++|+|++.|+.| ..+.+++
T Consensus 344 ~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 423 (582)
T PRK11176 344 FRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVS 423 (582)
T ss_pred EEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEc
Confidence 7799999965433359999999999999999999999999999999999998743 2345555
Q ss_pred CCCcccCC--------C---CCchhhhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 159 TSNEIGGD--------G---DIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 159 ~~~ei~~~--------~---~~~~~~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
+...+... + ......+.. . .+-..+|+||+||+++|||+..+|++|+
T Consensus 424 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ili 503 (582)
T PRK11176 424 QNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_pred cCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEE
Confidence 54332110 0 011111100 0 1113379999999999999999999999
Q ss_pred EcCCCcHHHHHH----HHHHH--HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 206 VDEIGTEAEAHA----CRSIA--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 206 lDEp~~~~d~~~----i~~~~--~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+||||+++|.+. ...+. .+++|+|++||..+... .||+++ ++++|++++.|+.+++...
T Consensus 504 lDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii--~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 504 LDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEIL--VVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred EECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 999999999632 22222 24799999999998764 599999 9999999999999988753
No 292
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=5.9e-24 Score=195.20 Aligned_cols=152 Identities=14% Similarity=0.084 Sum_probs=119.4
Q ss_pred hhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC----------------------CCeEEEEcCCCcccCCCCCch
Q 017797 114 MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF----------------------QKRVVIVDTSNEIGGDGDIPH 171 (365)
Q Consensus 114 ~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~----------------------~~~i~~i~~~~ei~~~~~~~~ 171 (365)
++++.++..++++|.|++||||||++|+|+|++.|+. .++|+|+++...+.....+..
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 4556666658999999999999999999999999883 246677766554422111100
Q ss_pred h-----------hhh-----------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHH
Q 017797 172 S-----------AIG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIA 222 (365)
Q Consensus 172 ~-----------~~~-----------~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~ 222 (365)
+ .+. ..++...+|||+|||++|.+||+.+|++|++|||.+.+|. ..+..+.
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~ 175 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLR 175 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHH
Confidence 0 000 0155667899999999999999999999999999999983 2355555
Q ss_pred -HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 223 -ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 223 -~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+..+.|+++||.++++..++|+++ +|++|++.+.|..++++..
T Consensus 176 ~e~~IPIlYVSHS~~Ev~RLAd~vV--~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 176 DEINIPILYVSHSLDEVLRLADRVV--VLENGKVKASGPLEEVWGS 219 (352)
T ss_pred HhcCCCEEEEecCHHHHHhhhheEE--EecCCeEEecCcHHHHhcC
Confidence 448999999999999999999999 9999999999999999865
No 293
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=1.4e-23 Score=195.72 Aligned_cols=152 Identities=16% Similarity=0.190 Sum_probs=109.2
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------CeEEEEcCCCcccCCCCCch-------------h
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------KRVVIVDTSNEIGGDGDIPH-------------S 172 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------~~i~~i~~~~ei~~~~~~~~-------------~ 172 (365)
++.....+.+|++++|+||||||||||+++|+|+++|+.| .++.++++.........+.+ .
T Consensus 15 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 94 (246)
T cd03237 15 LEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPY 94 (246)
T ss_pred EEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHH
Confidence 3333455678999999999999999999999999988743 25666665433211100000 0
Q ss_pred hhh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEc
Q 017797 173 AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAH 233 (365)
Q Consensus 173 ~~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H 233 (365)
... . .+....+|+|++||+++|+||+.+|+++++|||++++|+ +.++++.+ .|.+||+++|
T Consensus 95 ~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 174 (246)
T cd03237 95 FKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174 (246)
T ss_pred HHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 000 0 133456799999999999999999999999999999995 34555544 4899999999
Q ss_pred CcchhHHhhhHHHHHHHcCcEEE--EecCHHHHH
Q 017797 234 GEWLENIIKNPILSDLIGGVDTV--TLGDEEARA 265 (365)
Q Consensus 234 ~~~~~~~~~d~i~~~ll~~g~iv--~~g~~~~~~ 265 (365)
+.+++..+||+++ +++++..+ ..+.|....
T Consensus 175 d~~~~~~~~d~i~--~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 175 DIIMIDYLADRLI--VFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred CHHHHHHhCCEEE--EEcCCCeeEEEeCCchHHH
Confidence 9999999999999 77654322 445555543
No 294
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=2.2e-24 Score=188.79 Aligned_cols=164 Identities=15% Similarity=0.177 Sum_probs=128.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccC--------C--
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-- 166 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~--------~-- 166 (365)
+.++++.|+...+ ++++++.+.+|+.-.|+|||||||||+|-.|+|..+|+. +++.+-++ .++.. .
T Consensus 8 ~~~vsVsF~GF~A--ln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~-G~v~f~g~-~dl~~~~e~~IAr~GI 83 (249)
T COG4674 8 LDGVSVSFGGFKA--LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE-GEVLFDGD-TDLTKLPEHRIARAGI 83 (249)
T ss_pred EeceEEEEcceee--eeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCc-ceEEEcCc-hhhccCCHHHHHHhcc
Confidence 6689999999988 999999999999999999999999999999999999873 45544331 11100 0
Q ss_pred ------------CCCchh-------------------------hhhh-----------hhhccCCCcchhHHHHHHHHHh
Q 017797 167 ------------GDIPHS-------------------------AIGT-----------ARRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 167 ------------~~~~~~-------------------------~~~~-----------~~~~~~~S~g~~~r~~la~al~ 198 (365)
-.+.++ .+.. ......+|.||||++.|...+.
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~ 163 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLA 163 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeec
Confidence 000000 0000 0223456999999999999999
Q ss_pred hCCCEEEEcCCCcHHH-------HHHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 199 HMPEVIIVDEIGTEAE-------AHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 199 ~~P~vlilDEp~~~~d-------~~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
++|++|++|||.++.+ .++++.++. .++|+.+.|||.++..+++++. +++.|.+.+.|+.+++..+
T Consensus 164 Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~Fvr~~A~~VT--Vlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 164 QDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGFVREIADKVT--VLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred cCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHHHHHhhheeE--EEeccceeecccHHHhhcC
Confidence 9999999999988643 345666554 5899999999999999999999 9999999999999998654
No 295
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.90 E-value=8.2e-24 Score=191.78 Aligned_cols=158 Identities=19% Similarity=0.176 Sum_probs=121.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC---Cc--------ccC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS---NE--------IGG 165 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~---~e--------i~~ 165 (365)
+++++++|..+.+ +++|+-.+++|+..+|+|||||||||||+.+++...|. ...+..+..+ .+ ++.
T Consensus 34 l~~v~v~r~gk~i--L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps-sg~~~~~G~~~G~~~~~~elrk~IG~ 110 (257)
T COG1119 34 LKNVSVRRNGKKI--LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS-SGDVTLLGRRFGKGETIFELRKRIGL 110 (257)
T ss_pred ecceEEEECCEee--ccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC-CCceeeeeeeccCCcchHHHHHHhCc
Confidence 6689999999998 99999999999999999999999999999999999987 3333333211 00 100
Q ss_pred -------------------------CCCCchhhh-----h---h-----------hhhccCCCcchhHHHHHHHHHhhCC
Q 017797 166 -------------------------DGDIPHSAI-----G---T-----------ARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 166 -------------------------~~~~~~~~~-----~---~-----------~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
..++.+..+ . . -+.+..+|-|+++++.+||||+.+|
T Consensus 111 vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P 190 (257)
T COG1119 111 VSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDP 190 (257)
T ss_pred cCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCC
Confidence 001111000 0 0 1445667999999999999999999
Q ss_pred CEEEEcCCCcHHHHH-------HHHHHHHc--CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEec
Q 017797 202 EVIIVDEIGTEAEAH-------ACRSIAER--GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (365)
Q Consensus 202 ~vlilDEp~~~~d~~-------~i~~~~~~--G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g 259 (365)
++||||||++++|.. .+.+++.. +.+++++||..+++-...++++ ++..|+++..|
T Consensus 191 ~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l--ll~~g~v~~~g 255 (257)
T COG1119 191 ELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL--LLKEGEVVAQG 255 (257)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE--EeeCCceeecc
Confidence 999999999999953 34444444 7899999999998888888888 89999998875
No 296
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.90 E-value=2.2e-23 Score=221.07 Aligned_cols=166 Identities=14% Similarity=0.153 Sum_probs=126.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|.......++++++.+++|+.++|+||||||||||++.|+|++.|+.| ..+.+++
T Consensus 466 ~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~ 545 (694)
T TIGR03375 466 FRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVP 545 (694)
T ss_pred EEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEEC
Confidence 6799999975332349999999999999999999999999999999999998743 2455555
Q ss_pred CCCcccCC----------CCCchhhhhh----------------------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD----------GDIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------------------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+... .......+.. .++-..+|+||+||+++|||+..+|+++|+
T Consensus 546 Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliL 625 (694)
T TIGR03375 546 QDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLL 625 (694)
T ss_pred CChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 54332110 0111111100 011234799999999999999999999999
Q ss_pred cCCCcHHHHHH-------HHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~~~-------i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||||+++|.+. +..+ .++.|+|+++|..+.. ..||+++ ++++|++++.|+.+++..
T Consensus 626 DE~Ts~LD~~te~~i~~~l~~~-~~~~T~iiItHrl~~~-~~~D~ii--vl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 626 DEPTSAMDNRSEERFKDRLKRW-LAGKTLVLVTHRTSLL-DLVDRII--VMDNGRIVADGPKDQVLE 688 (694)
T ss_pred eCCCCCCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHH-HhCCEEE--EEeCCEEEeeCCHHHHHH
Confidence 99999999632 2222 2479999999999977 4799999 999999999999998865
No 297
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.90 E-value=8e-24 Score=207.66 Aligned_cols=159 Identities=18% Similarity=0.161 Sum_probs=124.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcc-------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI------------- 163 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei------------- 163 (365)
+.+++|+|+...+ .+++++.+.+|++.+|+|.|||||||||++|.|++.|+.| .|.+-..+..+
T Consensus 7 ~~~itK~f~~~~A--nd~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~G-eI~v~G~~v~~~sP~dA~~~GIGM 83 (501)
T COG3845 7 MRGITKRFPGVVA--NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSG-EIRVDGKEVRIKSPRDAIRLGIGM 83 (501)
T ss_pred EeccEEEcCCEEe--cCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcc-eEEECCEEeccCCHHHHHHcCCcE
Confidence 5689999997766 9999999999999999999999999999999999999953 33332221111
Q ss_pred -------cCCCCCchhh--------------------h-----------hhhhhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 164 -------GGDGDIPHSA--------------------I-----------GTARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 164 -------~~~~~~~~~~--------------------~-----------~~~~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
.....+.++. + .....+..+|-|++||+.|..+|..+|++||
T Consensus 84 VhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLI 163 (501)
T COG3845 84 VHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLI 163 (501)
T ss_pred EeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEE
Confidence 0000000000 0 0013345579999999999999999999999
Q ss_pred EcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecC
Q 017797 206 VDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (365)
Q Consensus 206 lDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~ 260 (365)
+||||+-+.+ +.++.++++|+|||++||-.+++..+||++. ++.+|+.+..-+
T Consensus 164 LDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvT--VLR~Gkvvgt~~ 223 (501)
T COG3845 164 LDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVT--VLRRGKVVGTVD 223 (501)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeE--EEeCCeEEeeec
Confidence 9999996653 5677788999999999999999999999999 999999876654
No 298
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.4e-23 Score=180.87 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=130.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC---cccCC-------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN---EIGGD------- 166 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~---ei~~~------- 166 (365)
++++++-|+...- .++++|.+.+|++.+|+|.+||||||||++|++-+.|+ .+.|.|..... +++..
T Consensus 9 V~~lsk~Yg~~~g--c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~-~G~v~Y~~r~~~~~dl~~msEaeRR~ 85 (258)
T COG4107 9 VSGLSKLYGPGKG--CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD-AGTVTYRMRDGQPRDLYTMSEAERRR 85 (258)
T ss_pred ehhhhhhhCCCcC--ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC-CCeEEEEcCCCCchhHhhhchHHHHH
Confidence 5689999998776 78999999999999999999999999999999999998 45566653221 11100
Q ss_pred ------CCCchh---------------------------------hhhhh-----------hhccCCCcchhHHHHHHHH
Q 017797 167 ------GDIPHS---------------------------------AIGTA-----------RRMQVPEPSLQHKVMIEAV 196 (365)
Q Consensus 167 ------~~~~~~---------------------------------~~~~~-----------~~~~~~S~g~~~r~~la~a 196 (365)
+.+.++ ...+. ......|+||+||+.||+-
T Consensus 86 L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARn 165 (258)
T COG4107 86 LLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARN 165 (258)
T ss_pred HhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHH
Confidence 000000 00011 1123459999999999999
Q ss_pred HhhCCCEEEEcCCCcHHHH-------HHHHHHH-HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhc
Q 017797 197 ENHMPEVIIVDEIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (365)
Q Consensus 197 l~~~P~vlilDEp~~~~d~-------~~i~~~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~ 268 (365)
|...|.++++||||.++|. +.++.+. +-|..++++||+...+..++++.+ +|.+|+++..|=.+.++.++
T Consensus 166 LVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlm--vmk~g~vve~GLTDrvLDDP 243 (258)
T COG4107 166 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLM--VMKQGQVVESGLTDRVLDDP 243 (258)
T ss_pred hccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcce--eecCCCEeccccccccccCC
Confidence 9999999999999999995 3445554 558999999999999999999999 99999999999888877654
Q ss_pred h
Q 017797 269 Q 269 (365)
Q Consensus 269 ~ 269 (365)
.
T Consensus 244 ~ 244 (258)
T COG4107 244 H 244 (258)
T ss_pred C
Confidence 3
No 299
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.6e-23 Score=212.03 Aligned_cols=169 Identities=15% Similarity=0.182 Sum_probs=129.8
Q ss_pred eeeEEEEECCc-ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEE
Q 017797 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i 157 (365)
++++++.|... ....++++++.+++|+.++++||+|+||||+...|.+++.|+.| ++|+++
T Consensus 468 F~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V 547 (716)
T KOG0058|consen 468 FEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLV 547 (716)
T ss_pred EEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeee
Confidence 56899999765 33458999999999999999999999999999999999999853 345555
Q ss_pred cCCCcccCC----------CCCchhhhhhh----------------------hhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 158 DTSNEIGGD----------GDIPHSAIGTA----------------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 158 ~~~~ei~~~----------~~~~~~~~~~~----------------------~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
.|.+-+... ......++... ++--.+|||||||++|||||..+|.|||
T Consensus 548 ~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLI 627 (716)
T KOG0058|consen 548 GQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLI 627 (716)
T ss_pred eccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEE
Confidence 544332110 11111111100 1222469999999999999999999999
Q ss_pred EcCCCcHHHHH---HHHHHH---HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhc
Q 017797 206 VDEIGTEAEAH---ACRSIA---ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (365)
Q Consensus 206 lDEp~~~~d~~---~i~~~~---~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~ 268 (365)
|||.|+.+|.+ +++++. -+++|||.+.|.++.++ -+|.++ ++++|++++.|+.+++++.+
T Consensus 628 LDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~-~Ad~Iv--vi~~G~V~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 628 LDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVR-HADQIV--VIDKGRVVEMGTHDELLSKP 693 (716)
T ss_pred EechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhh-hccEEE--EEcCCeEEecccHHHHhhCc
Confidence 99999999963 344432 34699999999999885 599999 99999999999999988754
No 300
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.89 E-value=3.2e-23 Score=214.36 Aligned_cols=165 Identities=18% Similarity=0.254 Sum_probs=123.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------eEEEEcCCCc-ccCC--
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNE-IGGD-- 166 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------~i~~i~~~~e-i~~~-- 166 (365)
+++++++|++..+ ++++++.+.+|++++|+||||||||||+++|+|+++|+.|. +|.|+++... +...
T Consensus 325 ~~~l~~~~~~~~~--l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~t 402 (552)
T TIGR03719 325 AENLSKGFGDKLL--IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKT 402 (552)
T ss_pred EeeEEEEECCeee--eccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCc
Confidence 7799999987655 99999999999999999999999999999999999887431 3667766432 2110
Q ss_pred -------C----CCchhh---------hhh-----hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHH--
Q 017797 167 -------G----DIPHSA---------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-- 219 (365)
Q Consensus 167 -------~----~~~~~~---------~~~-----~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~-- 219 (365)
. ...... ++. .+....+|+||+||+++|++++.+|++||+||||+++|+....
T Consensus 403 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 482 (552)
T TIGR03719 403 VWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRAL 482 (552)
T ss_pred HHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Confidence 0 011000 000 1234567999999999999999999999999999999964322
Q ss_pred -H-HHHcCcEEEEEEcCcchhHHhhhHHHHHHHcC-cEEE-EecCHHHHH
Q 017797 220 -S-IAERGVMLIGTAHGEWLENIIKNPILSDLIGG-VDTV-TLGDEEARA 265 (365)
Q Consensus 220 -~-~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~-g~iv-~~g~~~~~~ 265 (365)
+ +.+.+.+||++||+.+++..+||+++ ++++ |+++ +.|+.++..
T Consensus 483 ~~~l~~~~~~viivsHd~~~~~~~~d~i~--~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 483 EEALLEFAGCAVVISHDRWFLDRIATHIL--AFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred HHHHHHCCCeEEEEeCCHHHHHHhCCEEE--EEECCCeEEEeCCCHHHHH
Confidence 2 23334489999999999999999999 8875 6776 447665543
No 301
>PRK13409 putative ATPase RIL; Provisional
Probab=99.89 E-value=1.6e-23 Score=217.32 Aligned_cols=158 Identities=22% Similarity=0.279 Sum_probs=120.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----eEEEEcCCCcccCCCC---
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDGD--- 168 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-----~i~~i~~~~ei~~~~~--- 168 (365)
+++++++|+.. . ++++++.+.+|++++|+||||||||||+++|+|++.|+.|. ++.|+++.........
T Consensus 343 ~~~ls~~~~~~-~--l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e 419 (590)
T PRK13409 343 YPDLTKKLGDF-S--LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVED 419 (590)
T ss_pred EcceEEEECCE-E--EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHH
Confidence 66888888753 3 78889999999999999999999999999999999887442 3455665433211100
Q ss_pred --------Cchh-hhh-----------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHH
Q 017797 169 --------IPHS-AIG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSI 221 (365)
Q Consensus 169 --------~~~~-~~~-----------~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~ 221 (365)
.... ... ..+.+..+|+||+||+++|++|+++|++||+||||+++|. ++++++
T Consensus 420 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l 499 (590)
T PRK13409 420 LLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRI 499 (590)
T ss_pred HHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 0000 000 0134566899999999999999999999999999999995 345555
Q ss_pred HH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecC
Q 017797 222 AE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (365)
Q Consensus 222 ~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~ 260 (365)
++ .|.|||+++|+.+++..+||+++ ++++ ++...|+
T Consensus 500 ~~~~g~tviivsHD~~~~~~~aDrvi--vl~~-~~~~~g~ 536 (590)
T PRK13409 500 AEEREATALVVDHDIYMIDYISDRLM--VFEG-EPGKHGH 536 (590)
T ss_pred HHhCCCEEEEEeCCHHHHHHhCCEEE--EEcC-cceeeee
Confidence 55 48999999999999999999999 7765 7766655
No 302
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=1.5e-23 Score=181.97 Aligned_cols=167 Identities=19% Similarity=0.248 Sum_probs=131.1
Q ss_pred ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCC----------------CCCch
Q 017797 108 VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----------------GDIPH 171 (365)
Q Consensus 108 ~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~----------------~~~~~ 171 (365)
...+++.++|.+++|+-++|+|.||||||||.++|+|.++|+. ++|.+-+.+-++... ..-|.
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTs-G~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPR 103 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS-GEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPR 103 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCC-ceEEECCccccccchHhhhhheeeeecCCccccChh
Confidence 3366899999999999999999999999999999999999994 455544433222110 00011
Q ss_pred hhhhh------------------------hh-----------hccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-
Q 017797 172 SAIGT------------------------AR-----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA- 215 (365)
Q Consensus 172 ~~~~~------------------------~~-----------~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~- 215 (365)
..++. .+ ....++.|+|||+++|+||..+|++||.||..+++|+
T Consensus 104 l~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~s 183 (267)
T COG4167 104 LRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMS 183 (267)
T ss_pred hhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHH
Confidence 11110 11 2234589999999999999999999999999999995
Q ss_pred ------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchHHHHHhhC
Q 017797 216 ------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERKA 277 (365)
Q Consensus 216 ------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~~~~~~~~ 277 (365)
++..++.+ .|++.|+++........++|.++ +|+.|++|+.|++.+++..|..++..+.-
T Consensus 184 mrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~vi--VM~EG~vvE~G~t~~v~a~P~~~~TkRli 250 (267)
T COG4167 184 MRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVL--VMHEGEVVERGSTADVLASPLHELTKRLI 250 (267)
T ss_pred HHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEE--EEecCceeecCChhhhhcCCccHHHHHHH
Confidence 34555554 49999999999999999999999 99999999999999999988888776653
No 303
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.89 E-value=3.6e-23 Score=198.20 Aligned_cols=174 Identities=16% Similarity=0.189 Sum_probs=134.2
Q ss_pred eeeEEEEEC--CcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC-------------------------
Q 017797 97 IVGLTCRVG--RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE------------------------- 149 (365)
Q Consensus 97 i~~l~~r~~--~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~------------------------- 149 (365)
+.+|++.|. .....+++++++.+.+|+.++|+|.+|||||-+.+.++++++..
T Consensus 9 v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr 88 (534)
T COG4172 9 IRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLR 88 (534)
T ss_pred eeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHh
Confidence 557777775 23335599999999999999999999999999999999999753
Q ss_pred --CCCeEEEEcCCCcccCC----------------C------------------CCchhhhhhhhhccCCCcchhHHHHH
Q 017797 150 --FQKRVVIVDTSNEIGGD----------------G------------------DIPHSAIGTARRMQVPEPSLQHKVMI 193 (365)
Q Consensus 150 --~~~~i~~i~~~~ei~~~----------------~------------------~~~~~~~~~~~~~~~~S~g~~~r~~l 193 (365)
.|.+|..+++.+-...+ . ++++...........+|||++||++|
T Consensus 89 ~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMI 168 (534)
T COG4172 89 GVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMI 168 (534)
T ss_pred hhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHH
Confidence 13355555554321110 0 11111111112344579999999999
Q ss_pred HHHHhhCCCEEEEcCCCcHHHH-------HHHHHHH-HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHH
Q 017797 194 EAVENHMPEVIIVDEIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (365)
Q Consensus 194 a~al~~~P~vlilDEp~~~~d~-------~~i~~~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~ 265 (365)
|.||+.+|++||.||||+.+|. ++++++. +.|..++++|||++.+..++|+++ +|.+|++|..|..+.+|
T Consensus 169 AMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~--VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 169 AMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVY--VMQHGEIVETGTTETLF 246 (534)
T ss_pred HHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEE--EEeccEEeecCcHHHHh
Confidence 9999999999999999999994 5566664 559999999999999999999999 99999999999999999
Q ss_pred HhchHHH
Q 017797 266 RRCQKSI 272 (365)
Q Consensus 266 ~~~~~~~ 272 (365)
..+....
T Consensus 247 ~~PqHpY 253 (534)
T COG4172 247 AAPQHPY 253 (534)
T ss_pred hCCCChH
Confidence 8765433
No 304
>PLN03073 ABC transporter F family; Provisional
Probab=99.89 E-value=3.3e-23 Score=218.80 Aligned_cols=164 Identities=14% Similarity=0.184 Sum_probs=124.1
Q ss_pred eeeEEEEECC-cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCccc--CC
Q 017797 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIG--GD 166 (365)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------~~i~~i~~~~ei~--~~ 166 (365)
+++++++|+. ..+ ++++++.+.+|++++|+|||||||||||++|+|+++|+.| .++.|+++..... ..
T Consensus 511 ~~~ls~~y~~~~~i--l~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~ 588 (718)
T PLN03073 511 FSDASFGYPGGPLL--FKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLS 588 (718)
T ss_pred EEeeEEEeCCCCee--EeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcc
Confidence 6799999964 334 8999999999999999999999999999999999988743 2455666542100 00
Q ss_pred -----------CCCchhhh-------h-----hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHH----H
Q 017797 167 -----------GDIPHSAI-------G-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC----R 219 (365)
Q Consensus 167 -----------~~~~~~~~-------~-----~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i----~ 219 (365)
.......+ + ..+....+|+||+||+++|++++.+|++||+||||+++|.... .
T Consensus 589 ~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~ 668 (718)
T PLN03073 589 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQ 668 (718)
T ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 00001110 0 0123566899999999999999999999999999999996432 2
Q ss_pred HHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEE-EecCHHHH
Q 017797 220 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV-TLGDEEAR 264 (365)
Q Consensus 220 ~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv-~~g~~~~~ 264 (365)
.+.+.+.|||++||+.+++..+||+++ ++++|+++ +.|++++.
T Consensus 669 ~L~~~~gtvIivSHd~~~i~~~~drv~--~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 669 GLVLFQGGVLMVSHDEHLISGSVDELW--VVSEGKVTPFHGTFHDY 712 (718)
T ss_pred HHHHcCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEeCCCHHHH
Confidence 233334499999999999999999999 99999988 56776653
No 305
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=1.7e-23 Score=179.83 Aligned_cols=157 Identities=20% Similarity=0.205 Sum_probs=114.6
Q ss_pred eeEEEEECCc--ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC----------------------CCe
Q 017797 98 VGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF----------------------QKR 153 (365)
Q Consensus 98 ~~l~~r~~~~--~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~----------------------~~~ 153 (365)
+++++..+.. ....++++++.+++|+.++|+||+||||||||-.++|+..|++ +++
T Consensus 10 ~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~ 89 (228)
T COG4181 10 HHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARH 89 (228)
T ss_pred hhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccc
Confidence 3555555433 2345889999999999999999999999999999999998873 345
Q ss_pred EEEEcCCCcccCC------CCCchh---------h---------hhh----hhhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 154 VVIVDTSNEIGGD------GDIPHS---------A---------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 154 i~~i~~~~ei~~~------~~~~~~---------~---------~~~----~~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
|++++++..+... -.+|-. . ++. ......+|+|+|||++||+|+..+|++|+
T Consensus 90 vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLf 169 (228)
T COG4181 90 VGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLF 169 (228)
T ss_pred eeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEe
Confidence 6666554332110 000000 0 000 02234579999999999999999999999
Q ss_pred EcCCCcHHHH-------HHHHHH-HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEE
Q 017797 206 VDEIGTEAEA-------HACRSI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 257 (365)
Q Consensus 206 lDEp~~~~d~-------~~i~~~-~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~ 257 (365)
.||||.++|. +++..+ ++.|.|++++|||...+ ..|++.+ -+..|+++.
T Consensus 170 ADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA-~Rc~R~~--r~~~G~l~~ 226 (228)
T COG4181 170 ADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLA-ARCDRQL--RLRSGRLVE 226 (228)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHH-Hhhhhee--eeecceecc
Confidence 9999999984 333333 57799999999999876 4699998 778888764
No 306
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=3.9e-23 Score=213.81 Aligned_cols=166 Identities=16% Similarity=0.199 Sum_probs=124.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------eEEEEcCCC-cccCC--
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSN-EIGGD-- 166 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------~i~~i~~~~-ei~~~-- 166 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++.|+.|. ++.|+++.. .+...
T Consensus 327 ~~~l~~~~~~~~~--l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~t 404 (556)
T PRK11819 327 AENLSKSFGDRLL--IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKT 404 (556)
T ss_pred EEeEEEEECCeee--ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCC
Confidence 7799999987655 99999999999999999999999999999999999887431 356666643 22110
Q ss_pred -----------CCCc--hhh-------hhh-----hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHH---H
Q 017797 167 -----------GDIP--HSA-------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---C 218 (365)
Q Consensus 167 -----------~~~~--~~~-------~~~-----~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~---i 218 (365)
.... ... ++. .+....+|+||+||++++++++.+|++||+||||+++|+.. +
T Consensus 405 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 484 (556)
T PRK11819 405 VWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRAL 484 (556)
T ss_pred HHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 0000 000 000 12345689999999999999999999999999999999643 2
Q ss_pred HHH-HHcCcEEEEEEcCcchhHHhhhHHHHHHHc-CcEEE-EecCHHHHHH
Q 017797 219 RSI-AERGVMLIGTAHGEWLENIIKNPILSDLIG-GVDTV-TLGDEEARAR 266 (365)
Q Consensus 219 ~~~-~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~-~g~iv-~~g~~~~~~~ 266 (365)
.++ .+.+.+||++||+.+++..+||+++ +++ +|+++ +.|+.++...
T Consensus 485 ~~~l~~~~~tvi~vtHd~~~~~~~~d~i~--~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 485 EEALLEFPGCAVVISHDRWFLDRIATHIL--AFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred HHHHHhCCCeEEEEECCHHHHHHhCCEEE--EEECCCeEEEecCCHHHHHH
Confidence 222 2323489999999999999999999 887 47766 4677776544
No 307
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.89 E-value=3.6e-23 Score=215.63 Aligned_cols=165 Identities=15% Similarity=0.139 Sum_probs=125.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|.... ..++++++.+++|+.++|+|+||||||||++.|+|++.|+.| .+|.+++
T Consensus 343 ~~~v~f~y~~~~-~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~ 421 (592)
T PRK10790 343 IDNVSFAYRDDN-LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQ 421 (592)
T ss_pred EEEEEEEeCCCC-ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEc
Confidence 668999997532 249999999999999999999999999999999999998743 2355555
Q ss_pred CCCcccCC---------CCCchhhhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 159 TSNEIGGD---------GDIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
+...+... .......+.. . ..-..+|+||+||+++|||+..+|++|++|
T Consensus 422 Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlD 501 (592)
T PRK10790 422 QDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILD 501 (592)
T ss_pred cCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 55433211 0111111100 0 112347999999999999999999999999
Q ss_pred CCCcHHHHHH-------HHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 208 EIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 208 Ep~~~~d~~~-------i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|||+++|.+. +..+ ..++|+|+++|..+... .||+++ ++++|++++.|+.+++..
T Consensus 502 Epts~LD~~t~~~i~~~l~~~-~~~~tvIivtHr~~~l~-~~D~ii--~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 502 EATANIDSGTEQAIQQALAAV-REHTTLVVIAHRLSTIV-EADTIL--VLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred CCcccCCHHHHHHHHHHHHHH-hCCCEEEEEecchHHHH-hCCEEE--EEECCEEEEEcCHHHHHh
Confidence 9999999632 2222 24699999999998765 599999 999999999999998864
No 308
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.89 E-value=2.2e-23 Score=217.02 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=123.3
Q ss_pred eeeEEEEEC-CcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEE
Q 017797 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i 157 (365)
++++++.|. ...+ ++++++.+++|+.++|+||+|||||||++.|+|++ |+.| ++|.++
T Consensus 352 ~~~vsf~~~~~~~v--L~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v 428 (588)
T PRK11174 352 AEDLEILSPDGKTL--AGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWV 428 (588)
T ss_pred EEeeEEeccCCCee--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEe
Confidence 557876553 3334 89999999999999999999999999999999999 7632 245666
Q ss_pred cCCCcccCC----------CCCchhhhhhh----------------------hhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 158 DTSNEIGGD----------GDIPHSAIGTA----------------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 158 ~~~~ei~~~----------~~~~~~~~~~~----------------------~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
+|.+.+... .......+... ++-..+||||+||+++|||+..+|++||
T Consensus 429 ~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~Ili 508 (588)
T PRK11174 429 GQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLL 508 (588)
T ss_pred cCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 665443211 01111111000 1123479999999999999999999999
Q ss_pred EcCCCcHHHHHH-------HHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 206 VDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 206 lDEp~~~~d~~~-------i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+||||+.+|.+. +.++ .++.|+|+++|..+... .+|+++ ++++|++++.|+.+++...
T Consensus 509 LDE~TSaLD~~te~~i~~~l~~~-~~~~TvIiItHrl~~i~-~aD~Ii--vl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 509 LDEPTASLDAHSEQLVMQALNAA-SRRQTTLMVTHQLEDLA-QWDQIW--VMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred EeCCccCCCHHHHHHHHHHHHHH-hCCCEEEEEecChHHHH-hCCEEE--EEeCCeEeecCCHHHHHhc
Confidence 999999999632 2222 35799999999998775 599999 9999999999999988753
No 309
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=8.5e-24 Score=187.18 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=96.4
Q ss_pred CcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeE--------------EEEcCCCcccCCCCCchhhhh
Q 017797 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV--------------VIVDTSNEIGGDGDIPHSAIG 175 (365)
Q Consensus 110 ~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i--------------~~i~~~~ei~~~~~~~~~~~~ 175 (365)
.+++++++.+++|++++|+|||||||||||+++.+ + .+.+ .++++. +.....++.. ..
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~-~G~v~~~~~~~~~~~~~~~~~~q~-~~l~~~~L~~--~~ 80 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A-SGKARLISFLPKFSRNKLIFIDQL-QFLIDVGLGY--LT 80 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c-CCcEEECCcccccccccEEEEhHH-HHHHHcCCCc--cc
Confidence 34889999999999999999999999999999863 1 1222 222210 0000000000 00
Q ss_pred hhhhccCCCcchhHHHHHHHHHhhC--CCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 176 TARRMQVPEPSLQHKVMIEAVENHM--PEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 176 ~~~~~~~~S~g~~~r~~la~al~~~--P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
...+...+|+|++||+++++++..+ |++|++|||++++|.+ .++++.+.|.+||+++|+.++. ..||+++
T Consensus 81 ~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~-~~~d~i~ 159 (176)
T cd03238 81 LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL-SSADWII 159 (176)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEE
Confidence 1134567899999999999999999 9999999999999953 3444555799999999999987 4799988
Q ss_pred HHHHcCc
Q 017797 247 SDLIGGV 253 (365)
Q Consensus 247 ~~ll~~g 253 (365)
++++|
T Consensus 160 --~l~~g 164 (176)
T cd03238 160 --DFGPG 164 (176)
T ss_pred --EECCC
Confidence 77553
No 310
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.89 E-value=2.5e-23 Score=220.92 Aligned_cols=168 Identities=17% Similarity=0.191 Sum_probs=127.3
Q ss_pred eeeEEEEECCc-ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEE
Q 017797 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i 157 (365)
+++++++|... ....++++++.+++|+.++|+|||||||||+++.|+|++.|+.| .++.++
T Consensus 481 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v 560 (711)
T TIGR00958 481 FQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALV 560 (711)
T ss_pred EEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEE
Confidence 67999999742 12349999999999999999999999999999999999998743 235555
Q ss_pred cCCCcccCC----------CCCchhhhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 158 DTSNEIGGD----------GDIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 158 ~~~~ei~~~----------~~~~~~~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
+|...+... ...+...+.. . ..-..+|+||+||+++|||+..+|+++|
T Consensus 561 ~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILI 640 (711)
T TIGR00958 561 GQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLI 640 (711)
T ss_pred ecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 554433210 0111111100 0 1123479999999999999999999999
Q ss_pred EcCCCcHHHHHH---HHHH-HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 206 VDEIGTEAEAHA---CRSI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 206 lDEp~~~~d~~~---i~~~-~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+||||+++|.+. +.+. ...++|+|+++|..+... .+|+++ ++++|++++.|+++++...
T Consensus 641 LDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-~aD~Ii--vL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 641 LDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-RADQIL--VLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred EEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-hCCEEE--EEECCEEEEeeCHHHHHhC
Confidence 999999999643 3322 235799999999998764 599999 9999999999999998753
No 311
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.3e-23 Score=208.57 Aligned_cols=164 Identities=15% Similarity=0.160 Sum_probs=126.6
Q ss_pred eeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEcC
Q 017797 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVDT 159 (365)
Q Consensus 98 ~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~~ 159 (365)
++++++|.... ..+.++++.+++|+.++|+|++|||||||++.|+|+.+|+.| +++.++++
T Consensus 324 ~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q 402 (559)
T COG4988 324 ENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402 (559)
T ss_pred cceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCC
Confidence 38999998764 349999999999999999999999999999999999997732 34555555
Q ss_pred CCcccCCCCCchhh-----------hhh---------------------hhhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 160 SNEIGGDGDIPHSA-----------IGT---------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 160 ~~ei~~~~~~~~~~-----------~~~---------------------~~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
++-+.. +.+.++. +.. .+.-..+|+||.||+++|||+.++++++++|
T Consensus 403 ~p~lf~-gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llD 481 (559)
T COG4988 403 NPYLFA-GTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLD 481 (559)
T ss_pred CCcccc-ccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 544321 1111110 000 0111236999999999999999999999999
Q ss_pred CCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 208 EIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 208 Ep~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|||+++|++ .+.+++ ++.|||++||.+..+ .-+|+++ ++++|++++.|+++++..+
T Consensus 482 EpTA~LD~etE~~i~~~l~~l~-~~ktvl~itHrl~~~-~~~D~I~--vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 482 EPTAHLDAETEQIILQALQELA-KQKTVLVITHRLEDA-ADADRIV--VLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred CCccCCCHhHHHHHHHHHHHHH-hCCeEEEEEcChHHH-hcCCEEE--EecCCceeccCCHHHHhhc
Confidence 999999963 334444 459999999999866 4699999 9999999999999998653
No 312
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=5.2e-23 Score=185.08 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=100.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE---------------EcCCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI---------------VDTSN 161 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~---------------i~~~~ 161 (365)
+++++++|+.... .+ +++.+++|++++|+||||||||||+++|+|+++|+.| .|.+ +.+..
T Consensus 4 ~~~l~~~~~~~~l--~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 4 LHQLQFNIEQKNL--FD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSG-NIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred EEEeeEEECCcEE--EE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCcccChhhhhhEEeccCCc
Confidence 5689999976443 55 9999999999999999999999999999999988743 3332 22111
Q ss_pred cccCCCCCchh------------hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH--
Q 017797 162 EIGGDGDIPHS------------AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-- 216 (365)
Q Consensus 162 ei~~~~~~~~~------------~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~-- 216 (365)
.+.....+..+ .+.. .+....+|+|++||+++++|++.+|+++++|||++++|..
T Consensus 80 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~ 159 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENR 159 (195)
T ss_pred CCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 11000000000 0000 0233457999999999999999999999999999999953
Q ss_pred -----HHHHHHHcCcEEEEEEcCcchhHH
Q 017797 217 -----ACRSIAERGVMLIGTAHGEWLENI 240 (365)
Q Consensus 217 -----~i~~~~~~G~tVi~t~H~~~~~~~ 240 (365)
.+....+.|.|+|+++|+.+.+..
T Consensus 160 ~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 160 DLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 333334578999999999986654
No 313
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.89 E-value=1.9e-23 Score=202.31 Aligned_cols=141 Identities=17% Similarity=0.250 Sum_probs=106.1
Q ss_pred EEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCCCcccCCC-------------CCchhh----
Q 017797 127 FVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTSNEIGGDG-------------DIPHSA---- 173 (365)
Q Consensus 127 iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~~ei~~~~-------------~~~~~~---- 173 (365)
|+||||||||||+++|+|+++|+.| +++.++.+...+.... ..+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999999988743 1244544433221100 000000
Q ss_pred hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH-------HHHHHHH-cCcEEEEEEcC
Q 017797 174 IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAE-RGVMLIGTAHG 234 (365)
Q Consensus 174 ~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~-------~i~~~~~-~G~tVi~t~H~ 234 (365)
+. . .+....+|+||+||+++|+|++.+|++|++|||++++|.. .+.++.+ .|.|+|++||+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 00 0 0223457999999999999999999999999999999953 3445544 48999999999
Q ss_pred cchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 235 EWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 235 ~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
.+++..+||+++ ++++|+++..|++++++..+.
T Consensus 161 ~~e~~~~~d~i~--vl~~G~i~~~g~~~~~~~~~~ 193 (325)
T TIGR01187 161 QEEAMTMSDRIA--IMRKGKIAQIGTPEEIYEEPA 193 (325)
T ss_pred HHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCCC
Confidence 999999999999 999999999999999887543
No 314
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.89 E-value=3e-23 Score=215.49 Aligned_cols=167 Identities=11% Similarity=0.118 Sum_probs=126.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|.......++++++.+++|+.++|+||||||||||++.|+|++.|+.| .++.+++
T Consensus 341 ~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 420 (574)
T PRK11160 341 LNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVS 420 (574)
T ss_pred EEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEc
Confidence 6799999965322349999999999999999999999999999999999998743 1345555
Q ss_pred CCCcccCC----------CCCchhhhhh----------h-----------hhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 159 TSNEIGGD----------GDIPHSAIGT----------A-----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------~-----------~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
+...+... .......+.. . ..-..+|+||+||+++|||+..+|++|++|
T Consensus 421 Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililD 500 (574)
T PRK11160 421 QRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLD 500 (574)
T ss_pred ccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 54432110 0011111100 0 122347999999999999999999999999
Q ss_pred CCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 208 EIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 208 Ep~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|||+++|.+ .+.++ .+|.|+|+++|..+... .||+++ ++++|+++..|+.+++...
T Consensus 501 E~ts~lD~~t~~~i~~~l~~~-~~~~tviiitHr~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 501 EPTEGLDAETERQILELLAEH-AQNKTVLMITHRLTGLE-QFDRIC--VMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred CCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecChhHHH-hCCEEE--EEeCCeEEEeCCHHHHHhc
Confidence 999999953 23322 35899999999999875 599999 9999999999999988753
No 315
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.89 E-value=1.8e-23 Score=205.21 Aligned_cols=167 Identities=16% Similarity=0.183 Sum_probs=133.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC------------------CCeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF------------------QKRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~------------------~~~i~~i~ 158 (365)
++++++--.......+++++|.+.+|+.++|+||+|||||||.|+|.|.++|.. +++|+|++
T Consensus 337 Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLP 416 (580)
T COG4618 337 VERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLP 416 (580)
T ss_pred EeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCc
Confidence 334554323333345899999999999999999999999999999999999873 57899999
Q ss_pred CCCcccCCCCCchhhhh-----------h-h---------------------hhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 159 TSNEIGGDGDIPHSAIG-----------T-A---------------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 159 ~~~ei~~~~~~~~~~~~-----------~-~---------------------~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
+..|+.. +.+.++... . . ..-..+|+||+||+++|||+-.+|.+++
T Consensus 417 QdVeLF~-GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvV 495 (580)
T COG4618 417 QDVELFD-GTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVV 495 (580)
T ss_pred ccceecC-CcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEE
Confidence 9888632 222222110 0 0 0112359999999999999999999999
Q ss_pred EcCCCcHHH-------HHHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 206 VDEIGTEAE-------AHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 206 lDEp~~~~d-------~~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
||||-+++| .+++..++.+|.++++++|..+.. ..+|+++ +|++|++-.+|..+++...
T Consensus 496 LDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L-~~~Dkil--vl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 496 LDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSAL-ASVDKIL--VLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred ecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHH-hhcceee--eecCChHHhcCCHHHHHHH
Confidence 999999888 367888899999999999999965 5799999 9999999999999998763
No 316
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.89 E-value=3.4e-23 Score=185.40 Aligned_cols=126 Identities=17% Similarity=0.255 Sum_probs=92.8
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC--------------------eEEEEcCCCc--ccCC---
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------RVVIVDTSNE--IGGD--- 166 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~--------------------~i~~i~~~~e--i~~~--- 166 (365)
++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.++++... +...
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 87 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVD 87 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHH
Confidence 89999999999999999999999999999999999886321 1334433321 1100
Q ss_pred ---------CCCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------
Q 017797 167 ---------GDIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA------- 215 (365)
Q Consensus 167 ---------~~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~------- 215 (365)
....... +. . .+....+|+|++||+++++|++.+|++||+|||++++|.
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~ 167 (190)
T TIGR01166 88 QDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML 167 (190)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 0000000 00 0 023345799999999999999999999999999999995
Q ss_pred HHHHHHHHcCcEEEEEEcCcch
Q 017797 216 HACRSIAERGVMLIGTAHGEWL 237 (365)
Q Consensus 216 ~~i~~~~~~G~tVi~t~H~~~~ 237 (365)
+.+.++.++|.|||++||+.++
T Consensus 168 ~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 168 AILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHcCCEEEEEeecccc
Confidence 3455566679999999999874
No 317
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.89 E-value=1.5e-23 Score=214.92 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=117.7
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------CeEEEEcCCCc---ccCC---
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIVDTSNE---IGGD--- 166 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------------~~i~~i~~~~e---i~~~--- 166 (365)
++++++.+++|++++|+||||||||||+++|+|+++|+.| .++.|+++... +...
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~ 358 (510)
T PRK15439 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPL 358 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcH
Confidence 8899999999999999999999999999999999987632 12455544310 1000
Q ss_pred ---------C--CC---chh---hh-------hh-----hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH--
Q 017797 167 ---------G--DI---PHS---AI-------GT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-- 215 (365)
Q Consensus 167 ---------~--~~---~~~---~~-------~~-----~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-- 215 (365)
. .. ... .+ +. .++...+|+||+||+++|+|++.+|++||+||||+++|+
T Consensus 359 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~ 438 (510)
T PRK15439 359 AWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSA 438 (510)
T ss_pred HHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhH
Confidence 0 00 000 00 00 123456799999999999999999999999999999995
Q ss_pred -----HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHH
Q 017797 216 -----HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (365)
Q Consensus 216 -----~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~ 265 (365)
+.+.++++.|.+||++||+.+++..+||+++ ++++|+++..|+++++.
T Consensus 439 ~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~--~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 439 RNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVL--VMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEEccccCC
Confidence 4555566679999999999999999999999 99999999999887654
No 318
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.89 E-value=2.8e-23 Score=220.71 Aligned_cols=166 Identities=12% Similarity=0.150 Sum_probs=126.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+... ..++++++.+++|+.++|+||||||||||++.|+|++.|+.| .++.+++
T Consensus 476 ~~~vsf~y~~~~-~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 554 (708)
T TIGR01193 476 INDVSYSYGYGS-NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLP 554 (708)
T ss_pred EEEEEEEcCCCC-cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEe
Confidence 679999996422 349999999999999999999999999999999999998743 2456666
Q ss_pred CCCcccCC-----------CCCchhhhhhh----------------------hhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 159 TSNEIGGD-----------GDIPHSAIGTA----------------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 159 ~~~ei~~~-----------~~~~~~~~~~~----------------------~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
+...+... .......+... ..-..+|+||+||+++|||+.++|++||
T Consensus 555 Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~ili 634 (708)
T TIGR01193 555 QEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLI 634 (708)
T ss_pred cCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Confidence 65443210 01111111000 1123469999999999999999999999
Q ss_pred EcCCCcHHHHHH----HHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 206 VDEIGTEAEAHA----CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 206 lDEp~~~~d~~~----i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+||||+++|.+. ...+.+ +|.|+|+++|..+.. ..+|+++ ++++|+++..|+.+++..
T Consensus 635 LDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~-~~~D~i~--~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 635 LDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVA-KQSDKII--VLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHH-HcCCEEE--EEECCEEEEECCHHHHHh
Confidence 999999998532 122222 479999999999977 4699999 999999999999998865
No 319
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.4e-23 Score=214.73 Aligned_cols=152 Identities=12% Similarity=0.070 Sum_probs=117.3
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeE--------------------EEEcCCCc---ccC-C
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV--------------------VIVDTSNE---IGG-D 166 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i--------------------~~i~~~~e---i~~-~ 166 (365)
.++++++.+.+|++++|+||||||||||+++|+|+++|+. +.| .++++... +.. .
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~-G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTA-GQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCC-ceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 4799999999999999999999999999999999998763 233 33333211 110 0
Q ss_pred --------CCC----------ch-h---hhh-------h-----hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 167 --------GDI----------PH-S---AIG-------T-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 167 --------~~~----------~~-~---~~~-------~-----~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
... .. . ... . .+....+|+||+||+++|++++.+|++||+||||++
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 000 00 0 000 0 022446799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHH
Q 017797 213 AEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (365)
Q Consensus 213 ~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~ 265 (365)
+|. +++.++++.|.|||++||+++++..+||+++ ++.+|++++.|++++..
T Consensus 427 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~--~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 427 IDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIV--VMREGRIAGELAREQAT 484 (501)
T ss_pred CCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEE--EEECCEEEEEEccccCC
Confidence 995 3456667789999999999999999999999 99999999999887643
No 320
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.89 E-value=3.9e-23 Score=214.43 Aligned_cols=166 Identities=17% Similarity=0.170 Sum_probs=124.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|.......++++++.+++|+.++|+||||||||||+++|+|+++|+.| .++.+++
T Consensus 316 ~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 395 (569)
T PRK10789 316 VNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVS 395 (569)
T ss_pred EEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEc
Confidence 6688999965332349999999999999999999999999999999999998743 1344454
Q ss_pred CCCcccCC----------CCCchhhhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD----------GDIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+... .......+.. . .....+|+||+||+++|||+..+|+++++
T Consensus 396 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illl 475 (569)
T PRK10789 396 QTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILIL 475 (569)
T ss_pred cCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44332110 0111111100 0 11234799999999999999999999999
Q ss_pred cCCCcHHHHHH-------HHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~~~-------i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||||+++|.+. +..+ ..|.|+|+++|..+... .+|+++ .+++|+++..|+.+++..
T Consensus 476 DEpts~LD~~~~~~i~~~l~~~-~~~~tii~itH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 476 DDALSAVDGRTEHQILHNLRQW-GEGRTVIISAHRLSALT-EASEIL--VMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred ECccccCCHHHHHHHHHHHHHH-hCCCEEEEEecchhHHH-cCCEEE--EEeCCEEEEecCHHHHHH
Confidence 99999999632 3332 36899999999998764 599999 999999999999988765
No 321
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.89 E-value=3.7e-23 Score=215.22 Aligned_cols=165 Identities=13% Similarity=0.132 Sum_probs=124.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+... ..++++++.+++|+.++|+||||||||||++.|+|+++|+.| ..+.+++
T Consensus 337 ~~~v~~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 415 (585)
T TIGR01192 337 FRHITFEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVF 415 (585)
T ss_pred EEEEEEECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEc
Confidence 679999997532 238999999999999999999999999999999999998743 1344454
Q ss_pred CCCcccCC----------CCCchhhhhh----------------------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD----------GDIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------------------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+... .......+.. ......+|+||+||+++|||+..+|++||+
T Consensus 416 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ilil 495 (585)
T TIGR01192 416 QDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVL 495 (585)
T ss_pred cCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44332110 0011111000 011234799999999999999999999999
Q ss_pred cCCCcHHHHHH-------HHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~~~-------i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||||+++|.+. +..+ ..|.|+|+++|+.+... .||+++ ++++|+++..|+.+++..
T Consensus 496 DEpts~LD~~~~~~i~~~l~~~-~~~~tvI~isH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 496 DEATSALDVETEARVKNAIDAL-RKNRTTFIIAHRLSTVR-NADLVL--FLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred ECCccCCCHHHHHHHHHHHHHH-hCCCEEEEEEcChHHHH-cCCEEE--EEECCEEEEECCHHHHHH
Confidence 99999999632 3322 35899999999999885 599999 999999999999988765
No 322
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.89 E-value=2.1e-23 Score=195.49 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=111.3
Q ss_pred eEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE----------EEcCCC-------
Q 017797 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV----------IVDTSN------- 161 (365)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~----------~i~~~~------- 161 (365)
+++++|+... ..+++++ .+.+|++++|+|||||||||||++|+|+++|+. +.|. .++...
T Consensus 5 ~~~~~y~~~~-~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~-G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 5 EPVHRYGPNS-FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNL-GKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred CcceeecCcc-hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCC-ceEeeccccchhhhhccCchhhhhhHH
Confidence 7889997653 2388998 589999999999999999999999999999884 4453 111110
Q ss_pred ------cccC----CCCCch------------hh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEE
Q 017797 162 ------EIGG----DGDIPH------------SA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (365)
Q Consensus 162 ------ei~~----~~~~~~------------~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vl 204 (365)
.+.+ ....+. .. .. . .+....+|+|++||++++++++.+|+++
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~il 161 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFY 161 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 0000 000110 00 00 0 0223457999999999999999999999
Q ss_pred EEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEE
Q 017797 205 IVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 257 (365)
Q Consensus 205 ilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~ 257 (365)
++|||++++|. +.++++.++|.+||+++|+.+.+..+||+++ +++ |++++
T Consensus 162 llDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~--~l~-~~~~~ 218 (255)
T cd03236 162 FFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIH--CLY-GEPGA 218 (255)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE--EEC-CCCCc
Confidence 99999999996 3455556678999999999999988999998 775 44443
No 323
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=2.7e-23 Score=222.61 Aligned_cols=167 Identities=17% Similarity=0.184 Sum_probs=127.3
Q ss_pred eeeEEEEECCcc-cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------eEEEE
Q 017797 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------~i~~i 157 (365)
++++.++|+... ...++++++.+++|+.++|+||+||||||+++.|.+++.|+.|. +|+.+
T Consensus 353 f~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV 432 (1228)
T KOG0055|consen 353 FRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLV 432 (1228)
T ss_pred EEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCee
Confidence 568999997654 34589999999999999999999999999999999999998432 22222
Q ss_pred cCCCcccCCCCCchh-----------hhhhh----------------------hhccCCCcchhHHHHHHHHHhhCCCEE
Q 017797 158 DTSNEIGGDGDIPHS-----------AIGTA----------------------RRMQVPEPSLQHKVMIEAVENHMPEVI 204 (365)
Q Consensus 158 ~~~~ei~~~~~~~~~-----------~~~~~----------------------~~~~~~S~g~~~r~~la~al~~~P~vl 204 (365)
.+.+-+ +...+.++ .+..+ .+--.+|||||||++|||||..+|+||
T Consensus 433 ~QePvl-F~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~IL 511 (1228)
T KOG0055|consen 433 SQEPVL-FATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKIL 511 (1228)
T ss_pred eechhh-hcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEE
Confidence 222211 11111111 10000 112237999999999999999999999
Q ss_pred EEcCCCcHHHHH---HHH---HHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 205 IVDEIGTEAEAH---ACR---SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 205 ilDEp~~~~d~~---~i~---~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|||||+++|.+ .++ ..+..|.|-|+++|.++.+.. +|.++ ++++|++|+.|+++++...
T Consensus 512 LLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~--v~~~G~IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 512 LLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIA--VMEEGKIVEQGTHDELIAL 577 (1228)
T ss_pred EecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEE--EEECCEEEEecCHHHHHhc
Confidence 999999999963 222 234568999999999998876 99999 9999999999999999875
No 324
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.89 E-value=2.7e-23 Score=211.96 Aligned_cols=158 Identities=15% Similarity=0.107 Sum_probs=117.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc-CCC-------------------CeEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-EFQ-------------------KRVVI 156 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~-~~~-------------------~~i~~ 156 (365)
+++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++++ +.| .++.+
T Consensus 263 ~~~l~~~~~~~~i--l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 340 (490)
T PRK10938 263 LNNGVVSYNDRPI--LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGY 340 (490)
T ss_pred EeceEEEECCeeE--EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceE
Confidence 6789999987655 9999999999999999999999999999999998764 211 12444
Q ss_pred EcCCCcccC-C----------C-----CC----ch---hhhh-------h-----hhhccCCCcchhHHHHHHHHHhhCC
Q 017797 157 VDTSNEIGG-D----------G-----DI----PH---SAIG-------T-----ARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 157 i~~~~ei~~-~----------~-----~~----~~---~~~~-------~-----~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
+.+...+.. . . .. .. ..+. . .+....+|+||+||+++|+|++.+|
T Consensus 341 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p 420 (490)
T PRK10938 341 VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHP 420 (490)
T ss_pred ECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 443211100 0 0 00 00 0000 0 0223567999999999999999999
Q ss_pred CEEEEcCCCcHHHH-------HHHHHHHHcC-cEEEEEEcCcchhHH-hhhHHHHHHHcCcEEEEe
Q 017797 202 EVIIVDEIGTEAEA-------HACRSIAERG-VMLIGTAHGEWLENI-IKNPILSDLIGGVDTVTL 258 (365)
Q Consensus 202 ~vlilDEp~~~~d~-------~~i~~~~~~G-~tVi~t~H~~~~~~~-~~d~i~~~ll~~g~iv~~ 258 (365)
++||+||||+++|+ +.+.+++++| .|||++||+.+++.. +||+++ ++++|+++..
T Consensus 421 ~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~--~l~~G~i~~~ 484 (490)
T PRK10938 421 TLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLE--FVPDGDIYRY 484 (490)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEE--EecCCceEEe
Confidence 99999999999995 3455555665 579999999998876 689999 9999998865
No 325
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.89 E-value=7.1e-23 Score=217.14 Aligned_cols=166 Identities=17% Similarity=0.183 Sum_probs=125.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|.......++++++.+++|+.++|+||||||||||+++|+|++.|+.| ..+.+++
T Consensus 458 ~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~ 537 (694)
T TIGR01846 458 FENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVL 537 (694)
T ss_pred EEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEc
Confidence 6799999965432349999999999999999999999999999999999998743 1234444
Q ss_pred CCCcccCC----------CCCchhhhhh----------------------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD----------GDIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------------------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+... .......+.. ...-..+|+||+||+++|||+..+|++||+
T Consensus 538 q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ilil 617 (694)
T TIGR01846 538 QENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIF 617 (694)
T ss_pred cCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 43322110 0111111100 011234799999999999999999999999
Q ss_pred cCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||||+++|.+ .+.++ ..|.|+|+++|..+... .||+++ ++++|++++.|+.+++..
T Consensus 618 DEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~-~~d~ii--~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 618 DEATSALDYESEALIMRNMREI-CRGRTVIIIAHRLSTVR-ACDRII--VLEKGQIAESGRHEELLA 680 (694)
T ss_pred ECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEEeCChHHHH-hCCEEE--EEeCCEEEEeCCHHHHHH
Confidence 9999999953 23333 35799999999999875 599999 999999999999998765
No 326
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.3e-23 Score=212.59 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=118.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeE--------------------EE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV--------------------VI 156 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i--------------------~~ 156 (365)
++++++++ .. .++++++.+.+|++++|+||||||||||+++|+|+++|+. +.| .+
T Consensus 253 ~~~l~~~~--~~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~i~~~~~~~~~~~~i~~ 327 (491)
T PRK10982 253 VRNLTSLR--QP--SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSA-GTITLHGKKINNHNANEAINHGFAL 327 (491)
T ss_pred EeCccccc--Cc--ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCc-cEEEECCEECCCCCHHHHHHCCCEE
Confidence 44566552 22 3899999999999999999999999999999999998763 333 23
Q ss_pred EcCCCc----ccCC---------------C--C-Cchhh-------------hh---hhhhccCCCcchhHHHHHHHHHh
Q 017797 157 VDTSNE----IGGD---------------G--D-IPHSA-------------IG---TARRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 157 i~~~~e----i~~~---------------~--~-~~~~~-------------~~---~~~~~~~~S~g~~~r~~la~al~ 198 (365)
+++... +... . . ..... +. ..+....+|+||+||+++|++++
T Consensus 328 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 407 (491)
T PRK10982 328 VTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLL 407 (491)
T ss_pred cCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHh
Confidence 322210 0000 0 0 00000 00 01234567999999999999999
Q ss_pred hCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHH
Q 017797 199 HMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEE 262 (365)
Q Consensus 199 ~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~ 262 (365)
.+|++||+||||+++|+ +.+..+.+.|.|||++||+.+++..+||+++ ++++|+++..++++
T Consensus 408 ~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~--~l~~g~i~~~~~~~ 476 (491)
T PRK10982 408 TQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRIL--VMSNGLVAGIVDTK 476 (491)
T ss_pred cCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEE--EEECCEEEEEEccc
Confidence 99999999999999995 3456667789999999999999999999999 99999999877664
No 327
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.89 E-value=9.1e-23 Score=212.49 Aligned_cols=166 Identities=15% Similarity=0.180 Sum_probs=126.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+... ..++++++.+++|+.++|+||||||||||++.|+|+++|..| .+|.|++
T Consensus 337 ~~~vsf~y~~~~-~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 415 (588)
T PRK13657 337 FDDVSFSYDNSR-QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVF 415 (588)
T ss_pred EEEEEEEeCCCC-ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEe
Confidence 678999996422 249999999999999999999999999999999999998743 3556666
Q ss_pred CCCcccCC----------CCCchhhhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD----------GDIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+... .......+.. . ..-..+|+||+||+++|||+.++|+++|+
T Consensus 416 Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliL 495 (588)
T PRK13657 416 QDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILIL 495 (588)
T ss_pred cCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 65443211 0111111100 0 11124799999999999999999999999
Q ss_pred cCCCcHHHHHH---H-HHHH--HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEAHA---C-RSIA--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~~~---i-~~~~--~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||||+++|.+. + ..+. ..++|+|++||+.+.. ..+|+++ .+++|+++..|+.+++..
T Consensus 496 DEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~-~~~D~ii--~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 496 DEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTV-RNADRIL--VFDNGRVVESGSFDELVA 558 (588)
T ss_pred eCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHH-HhCCEEE--EEECCEEEEeCCHHHHHH
Confidence 99999999632 2 2222 2479999999999876 4699999 999999999999988764
No 328
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.89 E-value=4.9e-23 Score=216.11 Aligned_cols=164 Identities=10% Similarity=0.167 Sum_probs=124.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------eEEEEcCCCc-ccCC--
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNE-IGGD-- 166 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------~i~~i~~~~e-i~~~-- 166 (365)
+++++++|+...+ ++++++.+.+|++++|+|||||||||||++|+|++.|+.|. +++|+++... +...
T Consensus 322 ~~~l~~~~~~~~i--l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~t 399 (635)
T PRK11147 322 MENVNYQIDGKQL--VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKT 399 (635)
T ss_pred EeeeEEEECCeEE--EcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCC
Confidence 6799999987655 99999999999999999999999999999999999887431 3566665321 1110
Q ss_pred ---------CCC--c--hhhh-------h-----hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHH---H
Q 017797 167 ---------GDI--P--HSAI-------G-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---C 218 (365)
Q Consensus 167 ---------~~~--~--~~~~-------~-----~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~---i 218 (365)
... . ...+ + ..+.+..+|+|++||+++|++++.+|++||+||||+++|+.. +
T Consensus 400 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l 479 (635)
T PRK11147 400 VMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELL 479 (635)
T ss_pred HHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 000 0 0000 0 013456789999999999999999999999999999999643 3
Q ss_pred HHHH-HcCcEEEEEEcCcchhHHhhhHHHHHHHc-CcEEEEe-cCHHHH
Q 017797 219 RSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIG-GVDTVTL-GDEEAR 264 (365)
Q Consensus 219 ~~~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~-~g~iv~~-g~~~~~ 264 (365)
..+. +-+.|||++||+.+++..+||+++ +++ +|+++.+ |+.++.
T Consensus 480 ~~~l~~~~~tvi~vSHd~~~~~~~~d~i~--~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 480 EELLDSYQGTVLLVSHDRQFVDNTVTECW--IFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHhCCCeEEEEECCHHHHHHhcCEEE--EEeCCCeEEEccCCHHHH
Confidence 3333 335699999999999999999999 886 7897765 665554
No 329
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=6.2e-23 Score=203.19 Aligned_cols=165 Identities=15% Similarity=0.177 Sum_probs=128.8
Q ss_pred eeeEEEEECCcc-cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC-----------------CCCeEEEEc
Q 017797 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-----------------FQKRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~-----------------~~~~i~~i~ 158 (365)
++++++.|+++. + ++++++.+++|+-++|+|+|||||||++|+|.++.... .++-|++++
T Consensus 354 F~dV~f~y~~k~~i--L~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VP 431 (591)
T KOG0057|consen 354 FDDVHFSYGPKRKV--LKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVP 431 (591)
T ss_pred EEeeEEEeCCCCce--ecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeC
Confidence 558999999877 5 99999999999999999999999999999999998733 123456666
Q ss_pred CCCcccCC----------CCCchhhh-hh---------------------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD----------GDIPHSAI-GT---------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~-~~---------------------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
|...+... .......+ .. -++-..+|||+|||++++||++.+|+++++
T Consensus 432 Qd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~ 511 (591)
T KOG0057|consen 432 QDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLL 511 (591)
T ss_pred CcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEe
Confidence 65443211 00000000 00 023345699999999999999999999999
Q ss_pred cCCCcHHHH----HHHHHHH--HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEA----HACRSIA--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~----~~i~~~~--~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||||+.+|. +++..+. ..|.|+|++.|+.+... -||+++ ++++|++...|+.++++.
T Consensus 512 DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~-~~DkI~--~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 512 DEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLK-DFDKII--VLDNGTVKEYGTHSELLA 574 (591)
T ss_pred cCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHh-cCCEEE--EEECCeeEEeccHHHHhh
Confidence 999999985 3344443 45899999999999775 599999 999999999999999876
No 330
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.88 E-value=2.6e-23 Score=212.63 Aligned_cols=151 Identities=17% Similarity=0.155 Sum_probs=117.5
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------CeEEEEcCCCc---ccCC---
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIVDTSNE---IGGD--- 166 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------------~~i~~i~~~~e---i~~~--- 166 (365)
++++++.+.+|++++|+||||||||||+++|+|+++|+.| .++.|+++... +...
T Consensus 268 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv 347 (501)
T PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSV 347 (501)
T ss_pred cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcH
Confidence 7899999999999999999999999999999999987632 12555555421 1000
Q ss_pred ------C---C-------Cch-h---hh-------hh-----hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHH
Q 017797 167 ------G---D-------IPH-S---AI-------GT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (365)
Q Consensus 167 ------~---~-------~~~-~---~~-------~~-----~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d 214 (365)
. . ... . .+ +. .+....+|+||+||+++|+|++.+|++||+||||+++|
T Consensus 348 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD 427 (501)
T PRK10762 348 KENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427 (501)
T ss_pred HHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCC
Confidence 0 0 000 0 00 00 12244679999999999999999999999999999999
Q ss_pred H-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 215 A-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 215 ~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
. +.++.+.++|.|||++||+.+++..+||+++ ++++|+++..++++++
T Consensus 428 ~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~--~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 428 VGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRIL--VMHEGRISGEFTREQA 482 (501)
T ss_pred HhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEE--EEECCEEEEEeccccC
Confidence 5 4566666779999999999999999999999 9999999988887765
No 331
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.88 E-value=7.2e-23 Score=212.37 Aligned_cols=164 Identities=16% Similarity=0.209 Sum_probs=125.2
Q ss_pred eeeEEEEECC-cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE-------------------E
Q 017797 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------I 156 (365)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~-------------------~ 156 (365)
+++++++|.+ +.+ ++++++.+++|+.++|+||+||||||+++.|.|++.|+. +.|. +
T Consensus 331 f~~vsf~y~~~~~v--l~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~-G~I~idg~dI~~i~~~~lr~~I~~ 407 (567)
T COG1132 331 FENVSFSYPGKKPV--LKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS-GEILIDGIDIRDISLDSLRKRIGI 407 (567)
T ss_pred EEEEEEEcCCCCcc--ccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC-CeEEECCEehhhcCHHHHHHhccE
Confidence 6689999984 555 999999999999999999999999999999999999863 3333 3
Q ss_pred EcCCCcccCC----------CCCchhhhhhh----------------------hhccCCCcchhHHHHHHHHHhhCCCEE
Q 017797 157 VDTSNEIGGD----------GDIPHSAIGTA----------------------RRMQVPEPSLQHKVMIEAVENHMPEVI 204 (365)
Q Consensus 157 i~~~~ei~~~----------~~~~~~~~~~~----------------------~~~~~~S~g~~~r~~la~al~~~P~vl 204 (365)
++|...+... .......+... .+-..+|+||+||+++|||+..+|+++
T Consensus 408 V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~IL 487 (567)
T COG1132 408 VSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPIL 487 (567)
T ss_pred EcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3332222110 00111111000 112246999999999999999999999
Q ss_pred EEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 205 IVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 205 ilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
++||||+.+|.+ ++..+. +|.|+|+++|..+.+.. ||+++ ++++|++++.|+++++...
T Consensus 488 ILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~-aD~Ii--Vl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 488 ILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKN-ADRII--VLDNGRIVERGTHEELLAK 553 (567)
T ss_pred EEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHh-CCEEE--EEECCEEEEecCHHHHHHc
Confidence 999999999953 233333 56799999999988866 99999 9999999999999998764
No 332
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7e-23 Score=202.59 Aligned_cols=165 Identities=11% Similarity=0.134 Sum_probs=126.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD------------------ 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~------------------ 158 (365)
++|++++|.......++++++.+.+||.++|+|++||||||++..|+|.+.|+. +.|..-.
T Consensus 339 ~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~-G~i~~~g~~~~~l~~~~~~e~i~vl 417 (573)
T COG4987 339 LRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ-GSITLNGVEIASLDEQALRETISVL 417 (573)
T ss_pred eccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCC-CeeeECCcChhhCChhhHHHHHhhh
Confidence 669999999888667999999999999999999999999999999999998884 3343322
Q ss_pred -CCCcccCCCCCchh-----------hh-hhh-----------------hh----ccCCCcchhHHHHHHHHHhhCCCEE
Q 017797 159 -TSNEIGGDGDIPHS-----------AI-GTA-----------------RR----MQVPEPSLQHKVMIEAVENHMPEVI 204 (365)
Q Consensus 159 -~~~ei~~~~~~~~~-----------~~-~~~-----------------~~----~~~~S~g~~~r~~la~al~~~P~vl 204 (365)
++..+.. +.+.++ .+ ... .+ -.-+|||++||+++||+++++.+++
T Consensus 418 ~Qr~hlF~-~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~ 496 (573)
T COG4987 418 TQRVHLFS-GTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLW 496 (573)
T ss_pred ccchHHHH-HHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeE
Confidence 1111100 000000 00 000 01 1235999999999999999999999
Q ss_pred EEcCCCcHHHHH----HHHHH--HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 205 IVDEIGTEAEAH----ACRSI--AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 205 ilDEp~~~~d~~----~i~~~--~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++||||.++|.. .+..+ .-+|+|+|++||.....+ .+|+++ ++++|+++..|+++++..
T Consensus 497 lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le-~~drIi--vl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 497 LLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE-RMDRII--VLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh-hcCEEE--EEECCeeeecCCHHhhhc
Confidence 999999999963 22222 335899999999998775 699999 999999999999999876
No 333
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.88 E-value=1.8e-22 Score=209.41 Aligned_cols=166 Identities=17% Similarity=0.217 Sum_probs=125.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|.......++++++.+++|+.++|+|+||||||||++.|+|++.|+.| .++.|++
T Consensus 333 ~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 412 (571)
T TIGR02203 333 FRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVS 412 (571)
T ss_pred EEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEc
Confidence 6789999965322348999999999999999999999999999999999998743 2355665
Q ss_pred CCCcccCC--------C---CCchhhhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 159 TSNEIGGD--------G---DIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 159 ~~~ei~~~--------~---~~~~~~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
+.+.+... . ......+.. . ..-..+|+||+||+++||++..+|++++
T Consensus 413 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~ill 492 (571)
T TIGR02203 413 QDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILI 492 (571)
T ss_pred cCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 55433211 0 111111100 0 1112479999999999999999999999
Q ss_pred EcCCCcHHHHHH-------HHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 206 VDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 206 lDEp~~~~d~~~-------i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+||||+.+|.+. +... ..++|+|++||+.+.. ..||+++ .+++|+++..|+.+++..
T Consensus 493 LDEpts~LD~~~~~~i~~~L~~~-~~~~tiIiitH~~~~~-~~~D~ii--~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 493 LDEATSALDNESERLVQAALERL-MQGRTTLVIAHRLSTI-EKADRIV--VMDDGRIVERGTHNELLA 556 (571)
T ss_pred EeCccccCCHHHHHHHHHHHHHH-hCCCEEEEEehhhHHH-HhCCEEE--EEeCCEEEeeCCHHHHHH
Confidence 999999999532 2222 3479999999999865 5699999 899999999999998764
No 334
>PLN03073 ABC transporter F family; Provisional
Probab=99.88 E-value=2.2e-22 Score=212.62 Aligned_cols=163 Identities=19% Similarity=0.225 Sum_probs=123.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcc---ccCCCCeEEEEcCCCcccC--------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL---SDEFQKRVVIVDTSNEIGG-------- 165 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll---~~~~~~~i~~i~~~~ei~~-------- 165 (365)
+++++++|+.... ++++++.+.+|+.++|+||||||||||||+|+|.. .|. +..|.++++......
T Consensus 180 i~nls~~y~~~~l--l~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~-~g~I~~~~Q~~~g~~~t~~~~v~ 256 (718)
T PLN03073 180 MENFSISVGGRDL--IVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPK-NCQILHVEQEVVGDDTTALQCVL 256 (718)
T ss_pred EceEEEEeCCCEE--EECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCC-CCEEEEEeccCCCCCCCHHHHHH
Confidence 6799999987665 99999999999999999999999999999999864 233 467777665310000
Q ss_pred ----------------C--------------------CCCchhhh------------------------------h----
Q 017797 166 ----------------D--------------------GDIPHSAI------------------------------G---- 175 (365)
Q Consensus 166 ----------------~--------------------~~~~~~~~------------------------------~---- 175 (365)
. ...+...+ +
T Consensus 257 ~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~ 336 (718)
T PLN03073 257 NTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPE 336 (718)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChH
Confidence 0 00011100 0
Q ss_pred -hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHH----HHHcCcEEEEEEcCcchhHHhhhHHHHHHH
Q 017797 176 -TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEWLENIIKNPILSDLI 250 (365)
Q Consensus 176 -~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~----~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll 250 (365)
..+....+|+|++||++||++|..+|++|||||||+++|+..... +.+.|.|||+++|+.+++..+||+++ .+
T Consensus 337 ~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~--~l 414 (718)
T PLN03073 337 MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDIL--HL 414 (718)
T ss_pred HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE--EE
Confidence 012345689999999999999999999999999999999754333 34458899999999999999999999 99
Q ss_pred cCcEEE-EecCHHHH
Q 017797 251 GGVDTV-TLGDEEAR 264 (365)
Q Consensus 251 ~~g~iv-~~g~~~~~ 264 (365)
++|+++ +.|+.+..
T Consensus 415 ~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 415 HGQKLVTYKGDYDTF 429 (718)
T ss_pred ECCEEEEeCCCHHHH
Confidence 999986 45665543
No 335
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.87 E-value=3e-22 Score=207.97 Aligned_cols=166 Identities=14% Similarity=0.178 Sum_probs=124.5
Q ss_pred eeeEEEEECCcc-cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEE
Q 017797 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i 157 (365)
+++++++|.... ...++++++.+++|+.++|+||||||||||++.|+|++.|..| .++.++
T Consensus 340 ~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~ 419 (576)
T TIGR02204 340 FEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALV 419 (576)
T ss_pred EEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEE
Confidence 678999996422 1248999999999999999999999999999999999998743 134555
Q ss_pred cCCCcccCC----------CCCchhhhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 158 DTSNEIGGD----------GDIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 158 ~~~~ei~~~----------~~~~~~~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
++.+.+... .......+.. . .....+|+||+||+++|||+..+|++|+
T Consensus 420 ~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ili 499 (576)
T TIGR02204 420 PQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILL 499 (576)
T ss_pred ccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEE
Confidence 554332110 0011111100 0 1123479999999999999999999999
Q ss_pred EcCCCcHHHHHH-------HHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 206 VDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 206 lDEp~~~~d~~~-------i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+||||+++|.+. ++.+ .+++|+|++||+.+.. ..+|+++ .+++|++++.|+++++..
T Consensus 500 lDEpts~lD~~~~~~i~~~l~~~-~~~~t~IiitH~~~~~-~~~d~vi--~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 500 LDEATSALDAESEQLVQQALETL-MKGRTTLIIAHRLATV-LKADRIV--VMDQGRIVAQGTHAELIA 563 (576)
T ss_pred EeCcccccCHHHHHHHHHHHHHH-hCCCEEEEEecchHHH-HhCCEEE--EEECCEEEeeecHHHHHH
Confidence 999999999532 3333 2589999999999876 4699999 999999999999888754
No 336
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.87 E-value=3.2e-22 Score=210.28 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=126.5
Q ss_pred eeeEEEEECCc--ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------------C
Q 017797 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------K 152 (365)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------------~ 152 (365)
+++++++|... ....++++++.+++|++++|+||||||||||+++|+|+++|+.| .
T Consensus 7 ~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 86 (648)
T PRK10535 7 LKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRRE 86 (648)
T ss_pred EeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhc
Confidence 67999999632 12349999999999999999999999999999999999987632 1
Q ss_pred eEEEEcCCCcccCCC-------------CCchhh----hh-h----------hhhccCCCcchhHHHHHHHHHhhCCCEE
Q 017797 153 RVVIVDTSNEIGGDG-------------DIPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (365)
Q Consensus 153 ~i~~i~~~~ei~~~~-------------~~~~~~----~~-~----------~~~~~~~S~g~~~r~~la~al~~~P~vl 204 (365)
.+.++.+...+.... ..+... .. . ......+|+||+||++++++++.+|++|
T Consensus 87 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lL 166 (648)
T PRK10535 87 HFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVI 166 (648)
T ss_pred cEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 244554433221100 000000 00 0 0233457999999999999999999999
Q ss_pred EEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHH
Q 017797 205 IVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (365)
Q Consensus 205 ilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~ 265 (365)
++|||++++|. +.+.++.++|.|+++++|+.+..+ .||+++ ++++|++++.|++++..
T Consensus 167 llDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 167 LADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVI--EIRDGEIVRNPPAQEKV 231 (648)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEE--EEECCEEEeecCccccc
Confidence 99999999995 345555667999999999999876 699999 99999999999998775
No 337
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.86 E-value=8.4e-22 Score=206.10 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=117.9
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC--CC----------------eEEEEcCCCcccCCC-----
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--QK----------------RVVIVDTSNEIGGDG----- 167 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~--~~----------------~i~~i~~~~ei~~~~----- 167 (365)
.++++++.+++|++++|+|||||||||||++|+|...+.. .+ .+.|+++...+....
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~ 119 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREH 119 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHH
Confidence 3999999999999999999999999999999999987631 12 234444433221100
Q ss_pred -------CCch----hh----hh-------h----hhhc------cCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH
Q 017797 168 -------DIPH----SA----IG-------T----ARRM------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (365)
Q Consensus 168 -------~~~~----~~----~~-------~----~~~~------~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~ 215 (365)
..+. .. +. . ...+ ..+|+|++||+.+|++|..+|+++++||||+++|.
T Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~ 199 (617)
T TIGR00955 120 LMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDS 199 (617)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhH
Confidence 0110 00 00 0 0112 24899999999999999999999999999999995
Q ss_pred -------HHHHHHHHcCcEEEEEEcCcc-hhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 216 -------HACRSIAERGVMLIGTAHGEW-LENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 216 -------~~i~~~~~~G~tVi~t~H~~~-~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+.++.++++|.|||+|+|+.+ .+..++|+++ ++++|+++..|+++++..
T Consensus 200 ~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~--ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 200 FMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKII--LMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEE--EeeCCeEEEECCHHHHHH
Confidence 456666777999999999986 6678999999 999999999999998754
No 338
>PRK13764 ATPase; Provisional
Probab=99.86 E-value=1.2e-20 Score=193.54 Aligned_cols=205 Identities=22% Similarity=0.252 Sum_probs=140.1
Q ss_pred CCeEEEEEecCCceEEEEe--CccCceecCCCCCCHHHHHHHHHHHhc---cC------CCeee--EecCceEEEEEEEe
Q 017797 26 GQLLEVILDLGRLPEARYL--GEFGGKYLRSTEVSVEELEYAQSAVGE---FG------GDNRA--GIEGTLHRISAIRS 92 (365)
Q Consensus 26 ~~~~ei~l~~g~p~~~r~~--g~~~~~~~~~~~~t~~~l~~~~~~~~~---~~------~~~~~--~~~g~~~rv~~~~~ 92 (365)
.++|||||+.|.||++|+. |.+....+...++|.++++.+++.+.. .. .+... .....++|+++++.
T Consensus 142 ~~asdvhL~~g~pp~~r~~~~G~~~l~~i~~~~lt~~~l~~la~~i~~~~~~~~~~~~e~~~p~~~~~~~~~~Rv~i~~~ 221 (602)
T PRK13764 142 EETMSVHLKEGVPPMAKKGKPGEWKLVKIRDEPLTEEELEEIAREILERAKRDPDGFIEIERRGATVVQLGNYRIVIARP 221 (602)
T ss_pred CCceeEEEcCCCCcEEEEecCCceEEEECCCCCCCHHHHHHHHHHHHHHhcccccccceeecCcccccCCCCEEEEEEcc
Confidence 5799999999999999997 433334566678999999999887721 11 11111 11112589999987
Q ss_pred cCCceeeEEEEECCcc-cCcchhh-------hhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccc
Q 017797 93 RKGAIVGLTCRVGRAV-SGHIDMV-------YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG 164 (365)
Q Consensus 93 ~~~~i~~l~~r~~~~~-~~~~~~l-------~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~ 164 (365)
.... +++++.-+.. ...++.+ ......++.++|+||+||||||++++|+..++.. ++.|.+++++.|+.
T Consensus 222 p~~~--~~~itirrp~~~~~Le~l~l~~~l~~~l~~~~~~ILIsG~TGSGKTTll~AL~~~i~~~-~riV~TiEDp~El~ 298 (602)
T PRK13764 222 PFSD--GIEITAVRPVVKLSLEDYNLSEKLKERLEERAEGILIAGAPGAGKSTFAQALAEFYADM-GKIVKTMESPRDLQ 298 (602)
T ss_pred Cccc--cEEEEEEccCCCCCHHHhCCCHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHhhC-CCEEEEECCCcccc
Confidence 6644 4544432211 1112222 2224557789999999999999999999999754 66777999999985
Q ss_pred CCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcCcchhHHhhh
Q 017797 165 GDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 243 (365)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~~~~~~~~~d 243 (365)
....+.+ .....+.+ ......+|+++||+|++||+++.++++++..++..|+.++.|.|+.+..+.+.+
T Consensus 299 ~~~~i~q--------~~~~~~~~--~~~~~~lLR~rPD~IivGEiRd~Et~~~~~~l~~ag~GvigTlHA~sa~~Ai~R 367 (602)
T PRK13764 299 VPPEITQ--------YSKLEGSM--EETADILLLVRPDYTIYDEMRKTEDFKIFADMRLAGVGMVGVVHATRPIDAIQR 367 (602)
T ss_pred CCCcceE--------EeeccccH--HHHHHHHHhhCCCEEEECCCCCHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHH
Confidence 4222221 11111111 223345589999999999999999999998888889999999997765554433
No 339
>PLN03232 ABC transporter C family member; Provisional
Probab=99.86 E-value=1e-21 Score=222.42 Aligned_cols=168 Identities=11% Similarity=0.113 Sum_probs=127.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|.......++++++.+++|+.++|+||+|||||||+++|.|++.|+.| +++.+++
T Consensus 1237 f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVp 1316 (1495)
T PLN03232 1237 FEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIP 1316 (1495)
T ss_pred EEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEEC
Confidence 6799999965433349999999999999999999999999999999999998743 2445555
Q ss_pred CCCcccCC---------CCCchhhhhh-h---------------------hhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 159 TSNEIGGD---------GDIPHSAIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~~~-~---------------------~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
|.+.+... .......+.. . ..-..+|+||+||+++|||++.+|++||+|
T Consensus 1317 Qdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILD 1396 (1495)
T PLN03232 1317 QSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLD 1396 (1495)
T ss_pred CCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 54433110 0111111100 0 111247999999999999999999999999
Q ss_pred CCCcHHHHH---HHHHH-H--HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 208 EIGTEAEAH---ACRSI-A--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 208 Ep~~~~d~~---~i~~~-~--~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|||+.+|.+ .+.+. . .+++|+|+++|..+.+.. ||+++ ++++|++++.|+++++...
T Consensus 1397 EATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIl--VL~~G~ivE~Gt~~eLl~~ 1459 (1495)
T PLN03232 1397 EATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKIL--VLSSGQVLEYDSPQELLSR 1459 (1495)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEE--EEECCEEEEECCHHHHHhC
Confidence 999998853 22222 2 247999999999998764 99999 9999999999999998753
No 340
>PLN03130 ABC transporter C family member; Provisional
Probab=99.86 E-value=8.9e-22 Score=223.47 Aligned_cols=168 Identities=11% Similarity=0.097 Sum_probs=128.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|.......++++++.+++|+.++|+|++|||||||+++|.|++.|+.| +++.+++
T Consensus 1240 f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVp 1319 (1622)
T PLN03130 1240 FEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIP 1319 (1622)
T ss_pred EEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEEC
Confidence 6799999965433359999999999999999999999999999999999988743 3455555
Q ss_pred CCCcccCC---------CCCchhhhhh-h---------------------hhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 159 TSNEIGGD---------GDIPHSAIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~~~-~---------------------~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
|.+.+... .......+.. . ..-..+|+||+||++||||++.+|++||+|
T Consensus 1320 Qdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILD 1399 (1622)
T PLN03130 1320 QAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLD 1399 (1622)
T ss_pred CCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 54433110 0111111100 0 111247999999999999999999999999
Q ss_pred CCCcHHHHH---HHHHH-H--HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 208 EIGTEAEAH---ACRSI-A--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 208 Ep~~~~d~~---~i~~~-~--~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|||+.+|.+ .+.+. . -+++|+|+++|..+.+. -||+++ +|++|++++.|+|+++...
T Consensus 1400 EATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~-~~DrIl--VLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1400 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII-DCDRIL--VLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHH-hCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 999998853 23222 2 24799999999999875 499999 9999999999999999864
No 341
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.86 E-value=1.3e-21 Score=211.55 Aligned_cols=167 Identities=14% Similarity=0.155 Sum_probs=132.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE-------------------EE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~-------------------~i 157 (365)
+.++++.|+.... +++.+++.+++|++++++|||||||||++++|.|..+|+.|...+ |.
T Consensus 567 ~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyC 645 (885)
T KOG0059|consen 567 LNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYC 645 (885)
T ss_pred Ecceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccC
Confidence 4589999988773 599999999999999999999999999999999999998543222 11
Q ss_pred cCCCccc-------------CCCCCchhhhhh---------------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCC
Q 017797 158 DTSNEIG-------------GDGDIPHSAIGT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (365)
Q Consensus 158 ~~~~ei~-------------~~~~~~~~~~~~---------------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp 209 (365)
+|...+. ...+++..++.. ..+...+|+|+|+|+.+|.|+..+|+++++|||
T Consensus 646 PQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEP 725 (885)
T KOG0059|consen 646 PQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEP 725 (885)
T ss_pred CchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCC
Confidence 1111000 001222211110 144567799999999999999999999999999
Q ss_pred CcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 210 GTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 210 ~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+++.|+ .++.++++.|..||.|||.+++++.+|+|+. +|..|++...|+++++.+
T Consensus 726 stGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~a--Imv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 726 STGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTA--IMVIGQLRCIGSPQELKS 787 (885)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhh--eeecCeeEEecChHHHHh
Confidence 999995 5677777877799999999999999999999 999999999999998764
No 342
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.85 E-value=1.6e-21 Score=201.79 Aligned_cols=157 Identities=11% Similarity=0.113 Sum_probs=114.6
Q ss_pred eeeEEEEECCc---ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE-----------------
Q 017797 97 IVGLTCRVGRA---VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI----------------- 156 (365)
Q Consensus 97 i~~l~~r~~~~---~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~----------------- 156 (365)
+++++++|+.. ....++++++.+++|+.++|+||||||||||++.|+|++.|+. +.|.+
T Consensus 340 ~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~-G~i~~~g~~i~~~~~~~~~~~i 418 (555)
T TIGR01194 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE-GEILLDGAAVSADSRDDYRDLF 418 (555)
T ss_pred EEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEECCEECCCCCHHHHHhhC
Confidence 66999999753 1124899999999999999999999999999999999999874 33332
Q ss_pred --EcCCCcccCCCCC-----c---hhhhhh-h----------------hhccCCCcchhHHHHHHHHHhhCCCEEEEcCC
Q 017797 157 --VDTSNEIGGDGDI-----P---HSAIGT-A----------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (365)
Q Consensus 157 --i~~~~ei~~~~~~-----~---~~~~~~-~----------------~~~~~~S~g~~~r~~la~al~~~P~vlilDEp 209 (365)
+.+...+. ...+ + ...+.. . .....+|+||+||+++|||+..+|+++|+|||
T Consensus 419 ~~v~q~~~lf-~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ 497 (555)
T TIGR01194 419 SAIFADFHLF-DDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEW 497 (555)
T ss_pred cEEccChhhh-hhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 22211110 0000 0 000000 0 01134799999999999999999999999999
Q ss_pred CcHHHHHH---H----H-HHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEe
Q 017797 210 GTEAEAHA---C----R-SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (365)
Q Consensus 210 ~~~~d~~~---i----~-~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~ 258 (365)
|+++|.+. + . .+...|.|+|+++|+.+.. ..||+++ ++++|+++..
T Consensus 498 ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~-~~~d~i~--~l~~G~i~~~ 551 (555)
T TIGR01194 498 AADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF-ELADQII--KLAAGCIVKD 551 (555)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH-HhCCEEE--EEECCEEEEe
Confidence 99998532 2 1 2334689999999999866 4799999 9999998754
No 343
>PRK13409 putative ATPase RIL; Provisional
Probab=99.85 E-value=7.4e-22 Score=204.85 Aligned_cols=147 Identities=18% Similarity=0.185 Sum_probs=110.4
Q ss_pred eEEEEECCc-ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE-----------EEcC-------
Q 017797 99 GLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-----------IVDT------- 159 (365)
Q Consensus 99 ~l~~r~~~~-~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~-----------~i~~------- 159 (365)
.++++|+.. .+ +++++ .+++|++++|+||||||||||+++|+|++.|+. +.|. +-..
T Consensus 78 ~~~~~yg~~~~~--L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~-G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 78 EPVHRYGVNGFK--LYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNL-GDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred CceEEecCCcee--EecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCC-ccccCCCcHHHHHHHhCChHHHHHHH
Confidence 499999864 35 88998 799999999999999999999999999999884 3442 1000
Q ss_pred -----CCcccCC----CCCchh----------------hhh-----------hhhhccCCCcchhHHHHHHHHHhhCCCE
Q 017797 160 -----SNEIGGD----GDIPHS----------------AIG-----------TARRMQVPEPSLQHKVMIEAVENHMPEV 203 (365)
Q Consensus 160 -----~~ei~~~----~~~~~~----------------~~~-----------~~~~~~~~S~g~~~r~~la~al~~~P~v 203 (365)
...+... ...|.. .+. ..+.+..+|+||+||+++|++++.+|++
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~l 233 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADF 233 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 0000000 000100 000 0133456799999999999999999999
Q ss_pred EEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcC
Q 017797 204 IIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 252 (365)
Q Consensus 204 lilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~ 252 (365)
|++||||+++|. +.++.+++ |.+||+++|+++++..++|+++ ++.+
T Consensus 234 llLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~--vl~~ 286 (590)
T PRK13409 234 YFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVH--IAYG 286 (590)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEE--EEeC
Confidence 999999999995 34555566 9999999999999999999998 7865
No 344
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.85 E-value=1.4e-21 Score=201.86 Aligned_cols=158 Identities=13% Similarity=0.153 Sum_probs=116.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|.... ..++++++.+++|+.++|+||||||||||++.|+|+++|+.| .++.+++
T Consensus 325 ~~~v~f~y~~~~-~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 403 (547)
T PRK10522 325 LRNVTFAYQDNG-FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVF 403 (547)
T ss_pred EEEEEEEeCCCC-eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEe
Confidence 679999996432 239999999999999999999999999999999999988732 2344444
Q ss_pred CCCcccCC----C--CCchhhhh-------hhhh---------ccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH
Q 017797 159 TSNEIGGD----G--DIPHSAIG-------TARR---------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 216 (365)
Q Consensus 159 ~~~ei~~~----~--~~~~~~~~-------~~~~---------~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~ 216 (365)
+...+... . ......+. .... -..+|+||+||+++|||+..+|++||+||||+++|.+
T Consensus 404 q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~ 483 (547)
T PRK10522 404 TDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPH 483 (547)
T ss_pred cChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHH
Confidence 43322110 0 00000100 0000 1358999999999999999999999999999999863
Q ss_pred H-------HHHH-HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEe
Q 017797 217 A-------CRSI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (365)
Q Consensus 217 ~-------i~~~-~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~ 258 (365)
. +... .+.|.|+|+++|..+.. ..||+++ .+++|+++..
T Consensus 484 ~~~~i~~~l~~~~~~~~~tvi~itH~~~~~-~~~d~i~--~l~~G~i~e~ 530 (547)
T PRK10522 484 FRREFYQVLLPLLQEMGKTIFAISHDDHYF-IHADRLL--EMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEechHHH-HhCCEEE--EEECCEEEEe
Confidence 2 2222 23589999999999765 5799999 9999999877
No 345
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.85 E-value=1.7e-21 Score=219.33 Aligned_cols=167 Identities=17% Similarity=0.138 Sum_probs=123.0
Q ss_pred eeeEEEEECCc-ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC--------------------------
Q 017797 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-------------------------- 149 (365)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~-------------------------- 149 (365)
+++++++|... ....++++++.+++|+.++|+||+||||||+++.|.|++.|+
T Consensus 1168 f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 (1466)
T PTZ00265 1168 IMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEE 1247 (1466)
T ss_pred EEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence 56999999632 223499999999999999999999999999999999999872
Q ss_pred ---------------------------CCC-------------------eEEEEcCCCcccCC----------CCCchhh
Q 017797 150 ---------------------------FQK-------------------RVVIVDTSNEIGGD----------GDIPHSA 173 (365)
Q Consensus 150 ---------------------------~~~-------------------~i~~i~~~~ei~~~----------~~~~~~~ 173 (365)
..+ +|.+++|.+.+... .......
T Consensus 1248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~ee 1327 (1466)
T PTZ00265 1248 QNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRED 1327 (1466)
T ss_pred cccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHH
Confidence 112 34444444332110 0111111
Q ss_pred hhhh----------------------hhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH-------HHHHHH-H
Q 017797 174 IGTA----------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIA-E 223 (365)
Q Consensus 174 ~~~~----------------------~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~-------~i~~~~-~ 223 (365)
+..+ .+-..+|+||+||++|||||+.+|++|||||||+.+|.+ ++..+. .
T Consensus 1328 I~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~ 1407 (1466)
T PTZ00265 1328 VKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDK 1407 (1466)
T ss_pred HHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhcc
Confidence 1000 112246999999999999999999999999999999952 333333 2
Q ss_pred cCcEEEEEEcCcchhHHhhhHHHHHHHcC----cEEE-EecCHHHHHH
Q 017797 224 RGVMLIGTAHGEWLENIIKNPILSDLIGG----VDTV-TLGDEEARAR 266 (365)
Q Consensus 224 ~G~tVi~t~H~~~~~~~~~d~i~~~ll~~----g~iv-~~g~~~~~~~ 266 (365)
.|.|+|+++|..+.+. .||+++ ++++ |+++ +.|+.++++.
T Consensus 1408 ~~~TvIiIaHRlsti~-~aD~Iv--vl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1408 ADKTIITIAHRIASIK-RSDKIV--VFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred CCCEEEEEechHHHHH-hCCEEE--EEeCCCCCCCEEEEecCHHHHHh
Confidence 5899999999998775 699999 8988 8855 7999999875
No 346
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.85 E-value=2.9e-21 Score=196.60 Aligned_cols=163 Identities=13% Similarity=0.238 Sum_probs=124.6
Q ss_pred eeeEEEEECCc-ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCc-ccCC-
Q 017797 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNE-IGGD- 166 (365)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------~~i~~i~~~~e-i~~~- 166 (365)
++++++.|... .+ +.++++.+.+|+.++|+||||+||||||+.|+|.+.|..| -+++|+++... +...
T Consensus 324 ~~~~~~~y~~~~~l--~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~ 401 (530)
T COG0488 324 FENVSKGYDGGRLL--LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDK 401 (530)
T ss_pred EeccccccCCCcee--ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccC
Confidence 66899999664 55 8999999999999999999999999999999998877633 35777776542 1110
Q ss_pred -------CCCc---hhhhh------------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHH---
Q 017797 167 -------GDIP---HSAIG------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI--- 221 (365)
Q Consensus 167 -------~~~~---~~~~~------------~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~--- 221 (365)
...+ ...+. ...++..+|||+|.|+++|..+...|.+|||||||+.+|++.+..+
T Consensus 402 t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~a 481 (530)
T COG0488 402 TVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEA 481 (530)
T ss_pred cHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 0111 11110 0245677899999999999999999999999999999997654443
Q ss_pred H-HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEe-cCHHHH
Q 017797 222 A-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEAR 264 (365)
Q Consensus 222 ~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~-g~~~~~ 264 (365)
. +-.-|||++|||..+++.+|++++ .+.+ ++..+ |+.++.
T Consensus 482 L~~f~Gtvl~VSHDr~Fl~~va~~i~--~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 482 LLDFEGTVLLVSHDRYFLDRVATRIW--LVED-KVEEFEGGYEDY 523 (530)
T ss_pred HHhCCCeEEEEeCCHHHHHhhcceEE--EEcC-ceeEcCCCHHHH
Confidence 3 345699999999999999999999 7776 55444 665554
No 347
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.85 E-value=4.8e-21 Score=217.24 Aligned_cols=168 Identities=11% Similarity=0.112 Sum_probs=127.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|.......++++++.+++|+.++|+|++|||||||+++|.|++.|+.| .++.+++
T Consensus 1287 f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVp 1366 (1522)
T TIGR00957 1287 FRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIP 1366 (1522)
T ss_pred EEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEEC
Confidence 6689999976433359999999999999999999999999999999999988743 2455555
Q ss_pred CCCcccCC---------CCCchhhhhh-h---------------------hhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 159 TSNEIGGD---------GDIPHSAIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~~~-~---------------------~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
|.+.+... +......+.. . ..-..+|+||+|++++|||++.+|++||+|
T Consensus 1367 Qdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLD 1446 (1522)
T TIGR00957 1367 QDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLD 1446 (1522)
T ss_pred CCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 54433210 0111111100 0 111246999999999999999999999999
Q ss_pred CCCcHHHHH---HHHHH-H--HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 208 EIGTEAEAH---ACRSI-A--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 208 Ep~~~~d~~---~i~~~-~--~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|||+.+|.+ .+.+. . -+++|||+++|..+.+. -+|+++ +|++|++++.|+++++...
T Consensus 1447 EaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~-~~DrIl--Vld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1447 EATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIM-DYTRVI--VLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEE--EEECCEEEEECCHHHHHhC
Confidence 999998853 23322 2 24799999999998775 589999 9999999999999998753
No 348
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.85 E-value=3.2e-21 Score=177.61 Aligned_cols=77 Identities=12% Similarity=0.129 Sum_probs=66.8
Q ss_pred ccCCCcchhHHHHHHHHHhhCC--CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHH
Q 017797 180 MQVPEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI 250 (365)
Q Consensus 180 ~~~~S~g~~~r~~la~al~~~P--~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll 250 (365)
...+|+||+||+++++++..+| ++||+|||++++|. +.+..+++.|.|+|++||+.+++. +||+++ ++
T Consensus 135 ~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~--~l 211 (226)
T cd03270 135 APTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVI--DI 211 (226)
T ss_pred cCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEE--Ee
Confidence 4457999999999999999998 59999999999985 345555667999999999999874 899999 99
Q ss_pred ------cCcEEEEec
Q 017797 251 ------GGVDTVTLG 259 (365)
Q Consensus 251 ------~~g~iv~~g 259 (365)
++|++|++|
T Consensus 212 ~~~~~~~~G~iv~~g 226 (226)
T cd03270 212 GPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCccccCCEEEecC
Confidence 889999875
No 349
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.85 E-value=2.9e-21 Score=217.50 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=112.3
Q ss_pred eeeEEEEECCcc-cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE-------------------
Q 017797 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI------------------- 156 (365)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~------------------- 156 (365)
+++++++|+... ...++++++.+++|+.++|+||||||||||+++|+|++.|+. +.|.+
T Consensus 385 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~-G~I~i~~g~~i~~~~~~~lr~~Ig 463 (1466)
T PTZ00265 385 FKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTE-GDIIINDSHNLKDINLKWWRSKIG 463 (1466)
T ss_pred EEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCC-CeEEEeCCcchhhCCHHHHHHhcc
Confidence 679999997532 234999999999999999999999999999999999999874 34433
Q ss_pred -EcCCCcccCC-------CCCc----------------------------------------------------------
Q 017797 157 -VDTSNEIGGD-------GDIP---------------------------------------------------------- 170 (365)
Q Consensus 157 -i~~~~ei~~~-------~~~~---------------------------------------------------------- 170 (365)
+.+...+... .+.+
T Consensus 464 ~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 543 (1466)
T PTZ00265 464 VVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQT 543 (1466)
T ss_pred EecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccccccc
Confidence 2221111000 0000
Q ss_pred --hhhhhh----------------------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHH
Q 017797 171 --HSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACR 219 (365)
Q Consensus 171 --~~~~~~----------------------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~ 219 (365)
...+.. ..+...+|+||+||++||||++.+|++||+||||+++|. +++.
T Consensus 544 ~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~ 623 (1466)
T PTZ00265 544 IKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTIN 623 (1466)
T ss_pred CCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 000000 012235799999999999999999999999999999995 3455
Q ss_pred HHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCc
Q 017797 220 SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGV 253 (365)
Q Consensus 220 ~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g 253 (365)
.+.+ .|.|+|+++|+.+.+ ..||+++ ++++|
T Consensus 624 ~~~~~~g~TvIiIsHrls~i-~~aD~Ii--vl~~g 655 (1466)
T PTZ00265 624 NLKGNENRITIIIAHRLSTI-RYANTIF--VLSNR 655 (1466)
T ss_pred HHhhcCCCEEEEEeCCHHHH-HhCCEEE--EEeCC
Confidence 5544 589999999999987 5799999 88765
No 350
>PTZ00243 ABC transporter; Provisional
Probab=99.84 E-value=6.2e-21 Score=216.22 Aligned_cols=166 Identities=12% Similarity=0.114 Sum_probs=126.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|.......++++++.+++|+.++|+|++|||||||+++|.|++.|+.| ++|.+++
T Consensus 1311 f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVp 1390 (1560)
T PTZ00243 1311 FEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIP 1390 (1560)
T ss_pred EEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEEC
Confidence 6799999976443359999999999999999999999999999999999988732 3455555
Q ss_pred CCCcccCCCCC----------chhhhhh-h---------------------hhccCCCcchhHHHHHHHHHhhC-CCEEE
Q 017797 159 TSNEIGGDGDI----------PHSAIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHM-PEVII 205 (365)
Q Consensus 159 ~~~ei~~~~~~----------~~~~~~~-~---------------------~~~~~~S~g~~~r~~la~al~~~-P~vli 205 (365)
|.+.+.. +.+ ....+.. . ..-..+|+||+|+++||||++++ |++||
T Consensus 1391 Qdp~LF~-gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILl 1469 (1560)
T PTZ00243 1391 QDPVLFD-GTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFIL 1469 (1560)
T ss_pred CCCcccc-ccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 5443321 111 1111100 0 11124799999999999999996 89999
Q ss_pred EcCCCcHHHHH---HHHHH-H--HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 206 VDEIGTEAEAH---ACRSI-A--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 206 lDEp~~~~d~~---~i~~~-~--~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|||||+.+|.+ .+.+. . -.++|||+++|..+.+. .||+++ +|++|++++.|+++++..
T Consensus 1470 LDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~-~~DrIl--VLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1470 MDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA-QYDKII--VMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH-hCCEEE--EEECCEEEEECCHHHHHh
Confidence 99999998853 22222 2 24799999999998774 599999 999999999999999875
No 351
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6.5e-21 Score=171.19 Aligned_cols=164 Identities=20% Similarity=0.189 Sum_probs=121.4
Q ss_pred eeeEEEEECCc-ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC-CCCeEEEEcC---------------
Q 017797 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVDT--------------- 159 (365)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~-~~~~i~~i~~--------------- 159 (365)
|++|+.....+ .+ ++++++.+++|++.+|+||||||||||..+|+|.-... ..+.|.+-.+
T Consensus 6 I~dLhv~v~~~keI--LkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~Gi 83 (251)
T COG0396 6 IKDLHVEVEGKKEI--LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGI 83 (251)
T ss_pred EeeeEEEecCchhh--hcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCC
Confidence 77899999875 77 99999999999999999999999999999999976432 1234433221
Q ss_pred ------CCcccCC----------------CC-Cchh--hhhh------------hhhcc-CCCcchhHHHHHHHHHhhCC
Q 017797 160 ------SNEIGGD----------------GD-IPHS--AIGT------------ARRMQ-VPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 160 ------~~ei~~~----------------~~-~~~~--~~~~------------~~~~~-~~S~g~~~r~~la~al~~~P 201 (365)
|.++.+. .. .+.. .+.. .+.+. -+|||+++|..+.++++++|
T Consensus 84 fLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~leP 163 (251)
T COG0396 84 FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEP 163 (251)
T ss_pred EEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCC
Confidence 1122110 00 0000 0000 01111 24999999999999999999
Q ss_pred CEEEEcCCCcHHHHHH-------HHHHHHcCcEEEEEEcCcchhHHhh-hHHHHHHHcCcEEEEecCHHHHH
Q 017797 202 EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIK-NPILSDLIGGVDTVTLGDEEARA 265 (365)
Q Consensus 202 ~vlilDEp~~~~d~~~-------i~~~~~~G~tVi~t~H~~~~~~~~~-d~i~~~ll~~g~iv~~g~~~~~~ 265 (365)
++.|||||.|++|+++ +..+++.|.+++++||.....+.+. |.+. ++-+|++|..|++ ++.
T Consensus 164 kl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh--vl~~GrIv~sG~~-el~ 232 (251)
T COG0396 164 KLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH--VLYDGRIVKSGDP-ELA 232 (251)
T ss_pred CEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE--EEECCEEEecCCH-HHH
Confidence 9999999999999754 4556788999999999999887664 6666 9999999999999 544
No 352
>PRK10436 hypothetical protein; Provisional
Probab=99.84 E-value=1.9e-19 Score=180.93 Aligned_cols=200 Identities=21% Similarity=0.259 Sum_probs=147.2
Q ss_pred CCeEEEEEec---CCceEEEEeCccCceecCCCCCCHHHHHHHHHHH---h-------cc--CCCeeeEecCc--eEEEE
Q 017797 26 GQLLEVILDL---GRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAV---G-------EF--GGDNRAGIEGT--LHRIS 88 (365)
Q Consensus 26 ~~~~ei~l~~---g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~---~-------~~--~~~~~~~~~g~--~~rv~ 88 (365)
.++||||+.. +.++.+|++|.+. .+.. +..+....++..+ + +. .+.+++.+.|. .+||+
T Consensus 98 ~~ASDIHi~p~~~~~~vr~RidG~l~--~~~~--~~~~~~~~l~~~ik~~a~ld~~e~r~pQdG~~~~~~~~~~~~~Rvs 173 (462)
T PRK10436 98 KRASDIHFEPAQNHYRIRLRIDGVLH--PLPD--PSPELGAALTARLKVLGNLDIAERRLPQDGQFTVELAGNAYSFRIA 173 (462)
T ss_pred cCCceEEEEEcCCceEEEEEECCEEE--EeCC--CChhHHHHHHHHHHHhCCChHHHHhccccccEEEEECCEEEEEEEE
Confidence 6899999974 5689999999874 3322 3444444444333 1 11 34455556665 48999
Q ss_pred EEEecCCceeeEEEEECCccc--Ccchh----------hhhcc-cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE
Q 017797 89 AIRSRKGAIVGLTCRVGRAVS--GHIDM----------VYDLL-HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV 155 (365)
Q Consensus 89 ~~~~~~~~i~~l~~r~~~~~~--~~~~~----------l~~~l-~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~ 155 (365)
.+...+|. .+++|...... ..++. +...+ .++++++|.||+||||||+|.++...++.. ..+|+
T Consensus 174 ~~p~~~Ge--~vvlRll~~~~~~~~L~~LG~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~~~-~~~i~ 250 (462)
T PRK10436 174 TLPCRGGE--KVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLNTA-QINIC 250 (462)
T ss_pred EeecCCCc--eEEEEEeccccCCCCHHHcCcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhCCC-CCEEE
Confidence 99998998 99999865442 11222 22223 467899999999999999999988888655 68999
Q ss_pred EEcCCCcccCCCCCchhhhhhhhhccCC-CcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcC
Q 017797 156 IVDTSNEIGGDGDIPHSAIGTARRMQVP-EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHG 234 (365)
Q Consensus 156 ~i~~~~ei~~~~~~~~~~~~~~~~~~~~-S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~ 234 (365)
+++++.|+... ++.+ .++. ..|..+..++..+|+++||+|+++|+++.+.+.++.+++.+||.|+.|.|.
T Consensus 251 TiEDPvE~~l~-gi~Q--------~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD~eta~~al~AA~TGHlVlsTlHa 321 (462)
T PRK10436 251 SVEDPVEIPLA-GINQ--------TQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHT 321 (462)
T ss_pred EecCCccccCC-Ccce--------EeeCCccCcCHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHHHHcCCcEEEeecc
Confidence 99999997432 1222 2222 235678889999999999999999999999999988999999999999999
Q ss_pred cchhHHh
Q 017797 235 EWLENII 241 (365)
Q Consensus 235 ~~~~~~~ 241 (365)
.+....+
T Consensus 322 ~~a~~ai 328 (462)
T PRK10436 322 NSTSETL 328 (462)
T ss_pred CChHHHH
Confidence 9977643
No 353
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.84 E-value=4.9e-21 Score=197.10 Aligned_cols=148 Identities=14% Similarity=0.158 Sum_probs=107.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|.......++++++.+++|+.++|+||||||||||++.|+|+++|+.| +++.+++
T Consensus 323 ~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~ 402 (529)
T TIGR02857 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVP 402 (529)
T ss_pred EEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEc
Confidence 6789999976432249999999999999999999999999999999999998743 1345555
Q ss_pred CCCcccCC----------CCCchhhhhh-h---------------------hhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD----------GDIPHSAIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~-~---------------------~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+... ....+..+.. . +.-..+|+||+||+++|||+..+|+++++
T Consensus 403 Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ilil 482 (529)
T TIGR02857 403 QHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLL 482 (529)
T ss_pred CCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44332110 0111111100 0 12234799999999999999999999999
Q ss_pred cCCCcHHHHHH-------HHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 207 DEp~~~~d~~~-------i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
||||+++|.+. +..+ ..|.|+|+++|+.+... .||+++
T Consensus 483 DE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~-~~d~i~ 527 (529)
T TIGR02857 483 DEPTAHLDAETEALVTEALRAL-AQGRTVLLVTHRLALAE-RADRIV 527 (529)
T ss_pred eCcccccCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHH-hCCEEE
Confidence 99999999632 2222 25899999999998764 577754
No 354
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.84 E-value=6.7e-21 Score=216.07 Aligned_cols=167 Identities=13% Similarity=0.153 Sum_probs=128.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCCcccCC-----
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD----- 166 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----~~i~~i~~~~ei~~~----- 166 (365)
+++++++|+......++++++.+++|+.++|+||||||||||+++|+|+++|..| +++.|+++...+...
T Consensus 639 ~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eN 718 (1522)
T TIGR00957 639 VHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLREN 718 (1522)
T ss_pred EEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHH
Confidence 6789999975322349999999999999999999999999999999999988743 357788776544210
Q ss_pred ----CCCchhhhh-------------h---------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHH---
Q 017797 167 ----GDIPHSAIG-------------T---------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 217 (365)
Q Consensus 167 ----~~~~~~~~~-------------~---------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~--- 217 (365)
..+...... . .++...+|+||+||+++|||+..+|+++++|||++++|...
T Consensus 719 I~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~ 798 (1522)
T TIGR00957 719 ILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 798 (1522)
T ss_pred hhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHH
Confidence 001110000 0 01223579999999999999999999999999999999632
Q ss_pred -HHHH-----HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 218 -CRSI-----AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 218 -i~~~-----~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+..+ ..+|.|+|++||+.+.... ||+++ ++++|+++..|+++++..
T Consensus 799 i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii--~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 799 IFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVII--VMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred HHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEE--EecCCeEEeeCCHHHHHh
Confidence 2222 1357899999999998865 99999 999999999999998875
No 355
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.84 E-value=5.9e-21 Score=214.58 Aligned_cols=165 Identities=18% Similarity=0.170 Sum_probs=120.6
Q ss_pred eeeEEEEECC--cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc---cCCC--------------CeEEEE
Q 017797 97 IVGLTCRVGR--AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS---DEFQ--------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~--~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~---~~~~--------------~~i~~i 157 (365)
++++++.|.. .....++++++.+++|++++|+|||||||||||++|+|+.+ ++.| +.+.++
T Consensus 762 ~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv 841 (1394)
T TIGR00956 762 WRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYV 841 (1394)
T ss_pred EEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeee
Confidence 5688888852 11234999999999999999999999999999999999986 3311 234555
Q ss_pred cCCCcccCCC----------------CCchhh----hhh-h----------hhcc----CCCcchhHHHHHHHHHhhCCC
Q 017797 158 DTSNEIGGDG----------------DIPHSA----IGT-A----------RRMQ----VPEPSLQHKVMIEAVENHMPE 202 (365)
Q Consensus 158 ~~~~ei~~~~----------------~~~~~~----~~~-~----------~~~~----~~S~g~~~r~~la~al~~~P~ 202 (365)
.+...+.... .++... +.. . ..++ .+|+||+||+.|+++|+.+|+
T Consensus 842 ~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~ 921 (1394)
T TIGR00956 842 QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPK 921 (1394)
T ss_pred cccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCC
Confidence 5432211100 011100 000 0 1122 489999999999999999997
Q ss_pred -EEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchh-HHhhhHHHHHHHcCc-EEEEecCHHH
Q 017797 203 -VIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLE-NIIKNPILSDLIGGV-DTVTLGDEEA 263 (365)
Q Consensus 203 -vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~-~~~~d~i~~~ll~~g-~iv~~g~~~~ 263 (365)
+|++||||+++|. +.+++++++|.|||+|+|+.+.. ...+|+++ ++++| ++++.|++.+
T Consensus 922 ~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl--~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 922 LLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLL--LLQKGGQTVYFGDLGE 990 (1394)
T ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEE--EEcCCCEEEEECCccc
Confidence 9999999999994 45666777899999999999853 45799999 88876 9999998753
No 356
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.84 E-value=4.9e-21 Score=201.58 Aligned_cols=150 Identities=17% Similarity=0.223 Sum_probs=112.4
Q ss_pred eeeEEEEECC-cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCcccCC--
Q 017797 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGD-- 166 (365)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------~~i~~i~~~~ei~~~-- 166 (365)
+++++++|.. ..+ ++++++.+++|+.++|+||||||||||+++|+|+++++.| .++.++++...+...
T Consensus 454 ~~nv~~~~~~~~~i--l~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv 531 (659)
T TIGR00954 454 FENIPLVTPNGDVL--IESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTL 531 (659)
T ss_pred EEeeEEECCCCCee--eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCH
Confidence 6789998853 334 9999999999999999999999999999999999987643 246777766433210
Q ss_pred ------C---------CCchhhhhh----------hhh----------ccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc
Q 017797 167 ------G---------DIPHSAIGT----------ARR----------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 167 ------~---------~~~~~~~~~----------~~~----------~~~~S~g~~~r~~la~al~~~P~vlilDEp~~ 211 (365)
. ......+.. ..+ ...+|+||+||+++|+|+.++|+++|+||||+
T Consensus 532 ~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts 611 (659)
T TIGR00954 532 RDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTS 611 (659)
T ss_pred HHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 0 011111100 011 14689999999999999999999999999999
Q ss_pred HHHHHH---H-HHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHc
Q 017797 212 EAEAHA---C-RSIAERGVMLIGTAHGEWLENIIKNPILSDLIG 251 (365)
Q Consensus 212 ~~d~~~---i-~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~ 251 (365)
++|.+. + ..+.+.|.|+|+++|+.+.. ..||+++ +++
T Consensus 612 ~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~-~~~d~il--~l~ 652 (659)
T TIGR00954 612 AVSVDVEGYMYRLCREFGITLFSVSHRKSLW-KYHEYLL--YMD 652 (659)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeCchHHH-HhCCEEE--EEe
Confidence 999643 2 23345689999999999976 5688887 554
No 357
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.84 E-value=8e-21 Score=195.51 Aligned_cols=138 Identities=13% Similarity=0.134 Sum_probs=101.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eEEEEcC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDT 159 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-----------------~i~~i~~ 159 (365)
+++++++|.... ..++++++.+++|+.++|+||+|||||||++.|+|++.|+.|. ++.++++
T Consensus 337 ~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q 415 (529)
T TIGR02868 337 LRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQ 415 (529)
T ss_pred EEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEcc
Confidence 679999997533 2499999999999999999999999999999999999988432 4566666
Q ss_pred CCcccCC----------CCCchhhhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 160 SNEIGGD----------GDIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 160 ~~ei~~~----------~~~~~~~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
.+.+... .......+.. . ++-..+|+||+||+++|||+..+|+++|+|
T Consensus 416 ~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLD 495 (529)
T TIGR02868 416 DAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLD 495 (529)
T ss_pred CcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5543211 0111111100 0 112347999999999999999999999999
Q ss_pred CCCcHHHHHH---H-HHHH--HcCcEEEEEEcCc
Q 017797 208 EIGTEAEAHA---C-RSIA--ERGVMLIGTAHGE 235 (365)
Q Consensus 208 Ep~~~~d~~~---i-~~~~--~~G~tVi~t~H~~ 235 (365)
|||+.+|.+. + +.+. ..++|+|+++|..
T Consensus 496 E~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 496 EPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999632 2 2222 3479999999973
No 358
>PLN03232 ABC transporter C family member; Provisional
Probab=99.84 E-value=8.7e-21 Score=214.87 Aligned_cols=167 Identities=15% Similarity=0.091 Sum_probs=128.7
Q ss_pred eeeEEEEECCc-ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------CeEEEEcCCCcccCC---
Q 017797 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------KRVVIVDTSNEIGGD--- 166 (365)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------~~i~~i~~~~ei~~~--- 166 (365)
+++++++|... ....++++++.+++|+.++|+||+|||||||+++|+|+++|..| +.|.|++|.+.+...
T Consensus 617 ~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIr 696 (1495)
T PLN03232 617 IKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVR 696 (1495)
T ss_pred EEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHH
Confidence 66899999742 12349999999999999999999999999999999999998754 467888877654221
Q ss_pred ------CCCchhhhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHH-
Q 017797 167 ------GDIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 217 (365)
Q Consensus 167 ------~~~~~~~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~- 217 (365)
..+....... . .+-..+|||||||+++|||+..+|+++++|||++++|.+.
T Consensus 697 eNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~ 776 (1495)
T PLN03232 697 ENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVA 776 (1495)
T ss_pred HHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 0111111000 0 1112479999999999999999999999999999999632
Q ss_pred ---HHHH---HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 218 ---CRSI---AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 218 ---i~~~---~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+..+ ...|.|+|++||..+.. ..+|+++ ++++|+++..|+.+++..
T Consensus 777 ~~I~~~~l~~~l~~kT~IlvTH~~~~l-~~aD~Ii--~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 777 HQVFDSCMKDELKGKTRVLVTNQLHFL-PLMDRII--LVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHHHHHHhhhhhcCCEEEEEECChhhH-HhCCEEE--EEeCCEEEEecCHHHHHh
Confidence 2332 22579999999999876 4699999 999999999999998865
No 359
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=99.83 E-value=3.1e-19 Score=180.99 Aligned_cols=204 Identities=19% Similarity=0.249 Sum_probs=145.4
Q ss_pred CCeEEEEEec---CCceEEEEeCccCceecCCCCCCHHHHHHHHHHH---h-------ccCCCeee--EecCc--eEEEE
Q 017797 26 GQLLEVILDL---GRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAV---G-------EFGGDNRA--GIEGT--LHRIS 88 (365)
Q Consensus 26 ~~~~ei~l~~---g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~---~-------~~~~~~~~--~~~g~--~~rv~ 88 (365)
.++||||+.. +.++.+|++|.+. .... ++.+.-..++..+ . +...|+++ .+.|. .+|++
T Consensus 122 ~~ASDIHi~~~~~~~~vr~RidG~l~--~~~~--~~~~~~~~l~~~ik~~~~~d~~e~r~pQdg~~~~~~~~~~~~~Rvs 197 (486)
T TIGR02533 122 ERASDIHIEPFEKALVVRFRVDGVLR--DVLS--PPKKLHAALVSRVKIMAKLNIAEKRLPQDGRISLRVGGRDIDIRVS 197 (486)
T ss_pred cCCCEEEEEECCCceEEEEEECCEEE--EcCC--CcHHHHHHHHHHHHHhcCChHHHHhhcCCcEEEEeeCCeeEEEEEE
Confidence 6899999997 4589999999864 3322 3333323333322 1 22334444 44565 58999
Q ss_pred EEEecCCceeeEEEEECCccc--Ccchhh----------hhccc-CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE
Q 017797 89 AIRSRKGAIVGLTCRVGRAVS--GHIDMV----------YDLLH-YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV 155 (365)
Q Consensus 89 ~~~~~~~~i~~l~~r~~~~~~--~~~~~l----------~~~l~-~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~ 155 (365)
.+...+|. ++++|...... ..++.+ ...+. +.++++|+||+||||||+|+++...+++. +.+++
T Consensus 198 ~~p~~~G~--~~vlRll~~~~~~~~l~~Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~~~-~~~ii 274 (486)
T TIGR02533 198 TVPTSHGE--RVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLNTP-ERNIL 274 (486)
T ss_pred EEecCCCc--eEEEEeccCccCCCCHHHcCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccCCC-CCcEE
Confidence 99998998 99999876421 112222 22233 45799999999999999999888887654 57899
Q ss_pred EEcCCCcccCCCCCchhhhhhhhhccC-CCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcC
Q 017797 156 IVDTSNEIGGDGDIPHSAIGTARRMQV-PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHG 234 (365)
Q Consensus 156 ~i~~~~ei~~~~~~~~~~~~~~~~~~~-~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~ 234 (365)
+++++.|+... ++.+ .++ ...|..+..++..+|+++||+|+++|+++.+.+.++.+++.+||.|+.|.|.
T Consensus 275 TiEDpvE~~~~-~~~q--------~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~aa~tGHlvlsTlHa 345 (486)
T TIGR02533 275 TVEDPVEYQIE-GIGQ--------IQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQASLTGHLVLSTLHT 345 (486)
T ss_pred EEcCCeeeecC-CCce--------EEEccccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHHHHhCCcEEEEECC
Confidence 99999887532 1111 111 1235677789999999999999999999999999999999999999999999
Q ss_pred cchhHHhhhHHH
Q 017797 235 EWLENIIKNPIL 246 (365)
Q Consensus 235 ~~~~~~~~d~i~ 246 (365)
.+....+ +++.
T Consensus 346 ~sa~~ai-~RL~ 356 (486)
T TIGR02533 346 NDAAGAV-TRLI 356 (486)
T ss_pred CCHHHHH-HHHH
Confidence 9977643 3444
No 360
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.83 E-value=1.5e-19 Score=179.20 Aligned_cols=201 Identities=20% Similarity=0.216 Sum_probs=147.6
Q ss_pred CCeEEEEEecCC---ceEEEEeCccCceecCCCCCCHHHHHHHHHHHh----------ccCCCeeeE--ecCc--eEEEE
Q 017797 26 GQLLEVILDLGR---LPEARYLGEFGGKYLRSTEVSVEELEYAQSAVG----------EFGGDNRAG--IEGT--LHRIS 88 (365)
Q Consensus 26 ~~~~ei~l~~g~---p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~~----------~~~~~~~~~--~~g~--~~rv~ 88 (365)
.++||||+..-. .+.+|++|.+. ... .+..+-...++.++. +-.-|+|+. +.|. -||+|
T Consensus 138 ~~ASDIHiep~~~~~~IrfRidGvL~--~~~--~~~~~~~~~lvsriK~ma~LDIaErR~PQdGr~~~~~~~~~vd~RvS 213 (500)
T COG2804 138 EGASDIHIEPRENRYRIRFRIDGVLR--EVL--EPPKELAAALVSRLKVMAGLDIAERRLPQDGRIRLKLNGRKVDFRVS 213 (500)
T ss_pred cCCCceEEEeccCeEEEEEEECCEee--ehh--ccCHHHHHHHHHHHHHHhcCchhhccCCCCceEEEEeCCeeEEEEEe
Confidence 679999998433 45667788764 222 223455555665552 224444544 5565 48999
Q ss_pred EEEecCCceeeEEEEECCcccCc--chhh----------hhcc-cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE
Q 017797 89 AIRSRKGAIVGLTCRVGRAVSGH--IDMV----------YDLL-HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV 155 (365)
Q Consensus 89 ~~~~~~~~i~~l~~r~~~~~~~~--~~~l----------~~~l-~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~ 155 (365)
.+-...|. .+.+|.-.+.... ++.+ ...+ .+.++++++||+||||||+|-++...++.. ..+|.
T Consensus 214 tlP~~~GE--kvVlRil~~~~~~l~l~~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~-~~nI~ 290 (500)
T COG2804 214 TLPTFYGE--KVVLRILDKDQVILDLEKLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTP-ERNII 290 (500)
T ss_pred cCCCCCCc--EEEEEEeccccccCCHHHhCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCC-CceEE
Confidence 99999999 9999986554311 1112 2223 356799999999999999999999999865 56799
Q ss_pred EEcCCCcccCCCCCchhhhhhhhhccCC-CcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcC
Q 017797 156 IVDTSNEIGGDGDIPHSAIGTARRMQVP-EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHG 234 (365)
Q Consensus 156 ~i~~~~ei~~~~~~~~~~~~~~~~~~~~-S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~ 234 (365)
++++|.|+... ++.| +++- .-|+.+..++.+.|+++||||+++|+++.++++++.+++.+||.|+.|.|.
T Consensus 291 TiEDPVE~~~~-gI~Q--------~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD~ETAeiavqAalTGHLVlSTlHt 361 (500)
T COG2804 291 TIEDPVEYQLP-GINQ--------VQVNPKIGLTFARALRAILRQDPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHT 361 (500)
T ss_pred EeeCCeeeecC-Ccce--------eecccccCCCHHHHHHHHhccCCCeEEEeccCCHHHHHHHHHHHhcCCeEeeeccc
Confidence 99999998432 2222 2221 347778889999999999999999999999999999999999999999999
Q ss_pred cchhHHhh
Q 017797 235 EWLENIIK 242 (365)
Q Consensus 235 ~~~~~~~~ 242 (365)
.+....+.
T Consensus 362 nda~~ai~ 369 (500)
T COG2804 362 NDAPGAIT 369 (500)
T ss_pred CchHHHHH
Confidence 99776544
No 361
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.83 E-value=6.9e-19 Score=169.30 Aligned_cols=227 Identities=17% Similarity=0.208 Sum_probs=153.0
Q ss_pred CCCeEEEEEecCCceEEEEeCccCceecCCCCCCHHHHHHHHHHHhccC-----CC---eeeEecCceEEEEEEEec---
Q 017797 25 RGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG-----GD---NRAGIEGTLHRISAIRSR--- 93 (365)
Q Consensus 25 ~~~~~ei~l~~g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~~-----~~---~~~~~~g~~~rv~~~~~~--- 93 (365)
.+.++||.+..+.++.++..|... ......+|++++..+++.+..+. .+ ..+.+++ ..|+++....
T Consensus 4 d~~v~eI~in~~~~v~v~~~g~~~--~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~p~~~~~l~~-g~Rv~~~~~p~~~ 80 (308)
T TIGR02788 4 DEDVTEICINRPGEVWVEGPGGWQ--RFDVPDLTFSHLMRLARAIASFSKQSISEENPILSATLPG-GERVQIVIPPACE 80 (308)
T ss_pred CCCcEEEEEcCCCEEEEEECCcEE--EecCccCCHHHHHHHHHHHHHHhCCcccCCCceEEEECCC-CeEEEEECCCccc
Confidence 367999999999999998877643 33334689999999988775331 11 1122222 1577776632
Q ss_pred -CCceeeEEEEECCcccCcch------------------------------------hhhhcccCCcEEEEEcCCCCcHH
Q 017797 94 -KGAIVGLTCRVGRAVSGHID------------------------------------MVYDLLHYGKSILFVGRPGVGKT 136 (365)
Q Consensus 94 -~~~i~~l~~r~~~~~~~~~~------------------------------------~l~~~l~~g~~v~iiGpnGsGKT 136 (365)
++. .+++|......-.++ -+++.+..|+.++|+||||||||
T Consensus 81 ~~~~--~i~IRk~~~~~~sl~~l~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~v~~~~~ili~G~tGsGKT 158 (308)
T TIGR02788 81 NDTV--SITIRKPSLVDFSLDDYEEKGFFDTVRAQSGTLSDNDEQLLELLDAGDIKEFLRLAIASRKNIIISGGTGSGKT 158 (308)
T ss_pred CCCc--eEEEECCCCCCCCHHHHHHcCCcccccccccccchhhHHHHHhhhhHHHHHHHHHHhhCCCEEEEECCCCCCHH
Confidence 223 688887653321111 13345678999999999999999
Q ss_pred HHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhh-hhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH
Q 017797 137 TVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTA-RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (365)
Q Consensus 137 Tllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~-~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~ 215 (365)
||+++|++++++. .+++++++..|+.... + +..... .............-.++.+|+++||+|++|||++.+..
T Consensus 159 Tll~al~~~~~~~--~~iv~ied~~El~~~~--~-~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii~gE~r~~e~~ 233 (308)
T TIGR02788 159 TFLKSLVDEIPKD--ERIITIEDTREIFLPH--P-NYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRIILGELRGDEAF 233 (308)
T ss_pred HHHHHHHccCCcc--ccEEEEcCccccCCCC--C-CEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEEEeccCCHHHH
Confidence 9999999999875 5678888877764321 1 111110 11111122344566788999999999999999997665
Q ss_pred HHHHHHHHcCcE-EEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHH
Q 017797 216 HACRSIAERGVM-LIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (365)
Q Consensus 216 ~~i~~~~~~G~t-Vi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~ 265 (365)
.++.. ..+|+. ++.|+|+.+..+ ..+++. .+..|++...|.+.+.+
T Consensus 234 ~~l~a-~~~g~~~~i~T~Ha~~~~~-~~~Rl~--~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 234 DFIRA-VNTGHPGSITTLHAGSPEE-AFEQLA--LMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHH-HhcCCCeEEEEEeCCCHHH-HHHHHH--HHhhccccccCCCHHHH
Confidence 55444 458875 699999999554 588888 66667777777777665
No 362
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.83 E-value=1.7e-20 Score=212.29 Aligned_cols=166 Identities=16% Similarity=0.142 Sum_probs=124.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|.......++++++.+++|+.++|+|++|||||||+++|.|++. ..| .++.+++
T Consensus 1220 f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~Ip 1298 (1490)
T TIGR01271 1220 VQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIP 1298 (1490)
T ss_pred EEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEe
Confidence 669999997644345999999999999999999999999999999999986 321 2445555
Q ss_pred CCCcccCC---------CCCchhhhhh-h---------h------------hccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 159 TSNEIGGD---------GDIPHSAIGT-A---------R------------RMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~~~-~---------~------------~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
|.+-+... ..+....+.. . . .-..+|+||+|++++|||++.+|+|||||
T Consensus 1299 Qdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLD 1378 (1490)
T TIGR01271 1299 QKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLD 1378 (1490)
T ss_pred CCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 54433210 0011111100 0 0 01246999999999999999999999999
Q ss_pred CCCcHHHHHH---H-HHHH--HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 208 EIGTEAEAHA---C-RSIA--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 208 Ep~~~~d~~~---i-~~~~--~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|||+.+|.+. + ..+. ..++|||+++|..+.+. .+|+++ +|++|+++..|+|+++..
T Consensus 1379 EaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~-~~DrIl--vL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1379 EPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALL-ECQQFL--VIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEE--EEECCEEEEeCCHHHHHc
Confidence 9999988532 2 2222 24799999999998775 499999 999999999999999874
No 363
>PLN03130 ABC transporter C family member; Provisional
Probab=99.83 E-value=2e-20 Score=212.49 Aligned_cols=167 Identities=15% Similarity=0.077 Sum_probs=128.6
Q ss_pred eeeEEEEECCc-ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC-C-----CeEEEEcCCCcccCC---
Q 017797 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-Q-----KRVVIVDTSNEIGGD--- 166 (365)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~-~-----~~i~~i~~~~ei~~~--- 166 (365)
+++++++|... ....++++++.+++|+.++|+||+|||||||+++|+|.+.+.. | ++|.|++|.+.+...
T Consensus 617 ~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIr 696 (1622)
T PLN03130 617 IKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVR 696 (1622)
T ss_pred EEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHH
Confidence 66899999642 1224899999999999999999999999999999999999876 2 467888877654321
Q ss_pred ------CCCchhhhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHH-
Q 017797 167 ------GDIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 217 (365)
Q Consensus 167 ------~~~~~~~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~- 217 (365)
..+....+.. . .+-..+|||||||++||||+..+|+++++|||++++|.+.
T Consensus 697 eNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~ 776 (1622)
T PLN03130 697 DNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVG 776 (1622)
T ss_pred HHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHH
Confidence 0111111000 0 1222479999999999999999999999999999999642
Q ss_pred ---HHHH---HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 218 ---CRSI---AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 218 ---i~~~---~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+..+ ...|+|+|++||..+... .+|+++ ++++|+++..|+.+++..
T Consensus 777 ~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii--~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 777 RQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRII--LVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEE--EEeCCEEEEeCCHHHHHh
Confidence 2222 125899999999998664 699999 999999999999998864
No 364
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=5.1e-21 Score=164.12 Aligned_cols=135 Identities=16% Similarity=0.250 Sum_probs=100.1
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-------------------cccCC-----
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-------------------EIGGD----- 166 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~-------------------ei~~~----- 166 (365)
.++++++.+.+|+.++|+||+|||||||+++++.+++|+. +.+.+-.++. .+.+.
T Consensus 18 il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~-G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDN 96 (223)
T COG4619 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS-GTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDN 96 (223)
T ss_pred eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCC-ceEEEcCccccccChHHHHHHHHHHHcCccccccchhhc
Confidence 3899999999999999999999999999999999999984 3444332211 11000
Q ss_pred CCCchh--------hh--hh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHH
Q 017797 167 GDIPHS--------AI--GT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HAC 218 (365)
Q Consensus 167 ~~~~~~--------~~--~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i 218 (365)
..+|.. .. .. .++...+|||++|+.++++-|..-|++|+|||||+.+|. +++
T Consensus 97 lifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi 176 (223)
T COG4619 97 LIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176 (223)
T ss_pred cccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHH
Confidence 001110 00 00 133455799999999999999999999999999999994 223
Q ss_pred H-HHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 219 R-SIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 219 ~-~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
. ..+++.+.++.+||+.+.+-..+++++
T Consensus 177 ~~~v~~q~vAv~WiTHd~dqa~rha~k~i 205 (223)
T COG4619 177 HRYVREQNVAVLWITHDKDQAIRHADKVI 205 (223)
T ss_pred HHHhhhhceEEEEEecChHHHhhhhheEE
Confidence 3 335889999999999998767777766
No 365
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=2.1e-20 Score=200.50 Aligned_cols=167 Identities=16% Similarity=0.187 Sum_probs=126.9
Q ss_pred eeeEEEEECCcc-cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEE
Q 017797 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i 157 (365)
+++++++|+... ...++++++.+++|+.++|+||+||||||.+.+|-+++.|+.| +++..+
T Consensus 990 ~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lV 1069 (1228)
T KOG0055|consen 990 FRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLV 1069 (1228)
T ss_pred EeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhccee
Confidence 558999997543 2458999999999999999999999999999999999998843 122333
Q ss_pred cCCCcccC----------CCCCchhhhhhh----------------------hhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 158 DTSNEIGG----------DGDIPHSAIGTA----------------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 158 ~~~~ei~~----------~~~~~~~~~~~~----------------------~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
.|.+-+.. ...+++.++..+ ++-..+|||||||++||||++.+|+||+
T Consensus 1070 sQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILL 1149 (1228)
T KOG0055|consen 1070 SQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILL 1149 (1228)
T ss_pred ccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeee
Confidence 33322211 011222222110 2233569999999999999999999999
Q ss_pred EcCCCcHHHHH---HHHHH---HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 206 VDEIGTEAEAH---ACRSI---AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 206 lDEp~~~~d~~---~i~~~---~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|||-|+.+|.+ .++++ +..|.|.|.+.|.++.+ +-||.+. ++++|++++.|+.+++..
T Consensus 1150 LDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTI-qnaD~I~--Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1150 LDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTI-QNADVIA--VLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred eeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhh-hcCCEEE--EEECCEEEecccHHHHHh
Confidence 99999999952 33333 34589999999999977 4699999 999999999999999876
No 366
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=99.83 E-value=3.2e-19 Score=184.38 Aligned_cols=202 Identities=16% Similarity=0.225 Sum_probs=145.5
Q ss_pred CCeEEEEEec---CCceEEEEeCccCceecCCCCCCH-HHHHHHHHHHh-------ccCCCeeeE--ec-Cc--eEEEEE
Q 017797 26 GQLLEVILDL---GRLPEARYLGEFGGKYLRSTEVSV-EELEYAQSAVG-------EFGGDNRAG--IE-GT--LHRISA 89 (365)
Q Consensus 26 ~~~~ei~l~~---g~p~~~r~~g~~~~~~~~~~~~t~-~~l~~~~~~~~-------~~~~~~~~~--~~-g~--~~rv~~ 89 (365)
.++||||+.. +.++.+|++|.+. .....+.+. ..+...+..++ +...++++. +. +. .+|+|.
T Consensus 195 ~~ASDIhi~~~~~~~~v~~RidG~l~--~~~~~~~~~~~~~~~~~k~~~~~~~~~~r~pQ~g~~~~~~~~~~~~~~Rvs~ 272 (564)
T TIGR02538 195 KGASDIHFEPYEKSYRVRFRIDGILH--EVAQPPLALANRIAARIKVMSRLDIAEKRIPQDGRIKLKLSKSKAIDFRVST 272 (564)
T ss_pred cCCceEEEEecCCeEEEEEEECCEEE--EccCCCHHHHHHHHHHHHHHcCCChhccccCccceEEEEecCCceEEEEEEe
Confidence 6899999998 7899999999874 443333331 11222222221 123344444 42 33 589999
Q ss_pred EEecCCceeeEEEEECCccc--------Ccch----hhhhcc-cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE
Q 017797 90 IRSRKGAIVGLTCRVGRAVS--------GHID----MVYDLL-HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 156 (365)
Q Consensus 90 ~~~~~~~i~~l~~r~~~~~~--------~~~~----~l~~~l-~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~ 156 (365)
+...+|. ++++|...... +..+ .+...+ .+.++++|+||+||||||+|.++...+++. .++|++
T Consensus 273 ~p~~~G~--~~vlRll~~~~~~~~l~~lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~~~~-~~~i~t 349 (564)
T TIGR02538 273 LPTLFGE--KVVLRILDSSAAQLDIDKLGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTE-EVNIST 349 (564)
T ss_pred ccCCCCc--eeEEEeecCccccCCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhhCCC-CceEEE
Confidence 9998898 99999865432 1111 222323 356799999999999999999999988755 578999
Q ss_pred EcCCCcccCCCCCchhhhhhhhhccCC-CcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcCc
Q 017797 157 VDTSNEIGGDGDIPHSAIGTARRMQVP-EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGE 235 (365)
Q Consensus 157 i~~~~ei~~~~~~~~~~~~~~~~~~~~-S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~~ 235 (365)
++++.|+... ++.+ .++. ..|..+..++..+|+++||+|+++|+++.+.+.++.+++.+||.|+.|.|..
T Consensus 350 iEdpvE~~~~-~~~q--------~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd~eta~~a~~aa~tGHlv~tTlHa~ 420 (564)
T TIGR02538 350 AEDPVEINLP-GINQ--------VNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTN 420 (564)
T ss_pred ecCCceecCC-CceE--------EEeccccCCCHHHHHHHHhccCCCEEEeCCCCCHHHHHHHHHHHHcCCcEEEEeccC
Confidence 9999998532 1111 2221 3356788899999999999999999999999999999999999999999999
Q ss_pred chhHHh
Q 017797 236 WLENII 241 (365)
Q Consensus 236 ~~~~~~ 241 (365)
+....+
T Consensus 421 ~a~~~i 426 (564)
T TIGR02538 421 DAPETL 426 (564)
T ss_pred CHHHHH
Confidence 976544
No 367
>PLN03140 ABC transporter G family member; Provisional
Probab=99.82 E-value=2.5e-20 Score=209.41 Aligned_cols=150 Identities=15% Similarity=0.140 Sum_probs=113.0
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc--CCC---------------CeEEEEcCCCcccCC-------
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD--EFQ---------------KRVVIVDTSNEIGGD------- 166 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~--~~~---------------~~i~~i~~~~ei~~~------- 166 (365)
.++++++.+++|++++|+|||||||||||++|+|...+ ..| +.+.|+++...+...
T Consensus 895 iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L 974 (1470)
T PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESL 974 (1470)
T ss_pred EeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHH
Confidence 48999999999999999999999999999999998753 111 224555544222110
Q ss_pred ------C---CCchhh----h-------hh--h--hhc-----cCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH--
Q 017797 167 ------G---DIPHSA----I-------GT--A--RRM-----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-- 215 (365)
Q Consensus 167 ------~---~~~~~~----~-------~~--~--~~~-----~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-- 215 (365)
. ..+... + +. . ..+ ..+|+||+||+.|+++|+.+|++|++||||+++|.
T Consensus 975 ~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~ 1054 (1470)
T PLN03140 975 IYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1054 (1470)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 0 011100 0 00 0 111 35899999999999999999999999999999994
Q ss_pred -----HHHHHHHHcCcEEEEEEcCcc-hhHHhhhHHHHHHHcC-cEEEEecCHH
Q 017797 216 -----HACRSIAERGVMLIGTAHGEW-LENIIKNPILSDLIGG-VDTVTLGDEE 262 (365)
Q Consensus 216 -----~~i~~~~~~G~tVi~t~H~~~-~~~~~~d~i~~~ll~~-g~iv~~g~~~ 262 (365)
+.+++++++|.|||+|+|+.+ .+...+|+++ ++++ |+++..|++.
T Consensus 1055 a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vl--lL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1055 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL--LMKRGGQVIYSGPLG 1106 (1470)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEE--EEcCCCEEEEECCcc
Confidence 456677788999999999998 4567899999 8875 8999999874
No 368
>PTZ00243 ABC transporter; Provisional
Probab=99.81 E-value=4.7e-20 Score=209.07 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=120.3
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCCcccCC---------CCCchhhh--
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD---------GDIPHSAI-- 174 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----~~i~~i~~~~ei~~~---------~~~~~~~~-- 174 (365)
.++++++.+++|++++|+|||||||||||++|+|++.|+.| ++|.|+++...+... ........
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~ 754 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLAD 754 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHH
Confidence 38999999999999999999999999999999999988744 457888876554211 00000000
Q ss_pred --h--------------h----hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHH----HHHH---HHcCcE
Q 017797 175 --G--------------T----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----CRSI---AERGVM 227 (365)
Q Consensus 175 --~--------------~----~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~----i~~~---~~~G~t 227 (365)
. . .++...+|+||+||+++|+|+..+|+++++|||++++|... +..+ ...|.|
T Consensus 755 ~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~T 834 (1560)
T PTZ00243 755 AVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKT 834 (1560)
T ss_pred HHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCE
Confidence 0 0 12334579999999999999999999999999999999632 2211 235899
Q ss_pred EEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 228 LIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 228 Vi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+|++||+.+... .||+++ ++++|+++..|+.+++...
T Consensus 835 vIlvTH~~~~~~-~ad~ii--~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 835 RVLATHQVHVVP-RADYVV--ALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred EEEEeCCHHHHH-hCCEEE--EEECCEEEEecCHHHHHhC
Confidence 999999999885 699999 9999999999999988653
No 369
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.81 E-value=5.3e-20 Score=208.33 Aligned_cols=152 Identities=12% Similarity=0.020 Sum_probs=118.7
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCCcccCC---------CCCchh---h
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD---------GDIPHS---A 173 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----~~i~~i~~~~ei~~~---------~~~~~~---~ 173 (365)
.++++++.+++|++++|+|||||||||||++|+|+++|..| +++.|+.+...+... ..+... .
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~ 520 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTS 520 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHH
Confidence 38999999999999999999999999999999999998754 356777776544211 001000 0
Q ss_pred -hh---h---h------------hhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHH--------HHHHHHcCc
Q 017797 174 -IG---T---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--------CRSIAERGV 226 (365)
Q Consensus 174 -~~---~---~------------~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~--------i~~~~~~G~ 226 (365)
+. . . .+...+|+|||||+++|||+..+|+++++|||++++|... +..+ .+|.
T Consensus 521 ~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~-~~~~ 599 (1490)
T TIGR01271 521 VIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKL-MSNK 599 (1490)
T ss_pred HHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hcCC
Confidence 00 0 0 1224579999999999999999999999999999999632 1222 2589
Q ss_pred EEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 227 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 227 tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|+|++||+.+... .||+++ ++++|+++..|+++++..
T Consensus 600 tvilvtH~~~~~~-~ad~ii--~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 600 TRILVTSKLEHLK-KADKIL--LLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred eEEEEeCChHHHH-hCCEEE--EEECCEEEEEcCHHHHHh
Confidence 9999999999876 499999 999999999999998865
No 370
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=2.7e-19 Score=186.33 Aligned_cols=154 Identities=17% Similarity=0.179 Sum_probs=116.7
Q ss_pred CcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC--CCC----------------eEEEEcCCCcccCC-----
Q 017797 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE--FQK----------------RVVIVDTSNEIGGD----- 166 (365)
Q Consensus 110 ~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~--~~~----------------~i~~i~~~~ei~~~----- 166 (365)
..+++++..+++|++++|+||+||||||||++|+|..+.. ..+ ...|+.|..-+...
T Consensus 44 ~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~E 123 (613)
T KOG0061|consen 44 TILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRE 123 (613)
T ss_pred eeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHH
Confidence 3499999999999999999999999999999999998753 122 23344333222110
Q ss_pred -------CCCch----hh----hh---------hh--hhc-----cCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHH-
Q 017797 167 -------GDIPH----SA----IG---------TA--RRM-----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE- 214 (365)
Q Consensus 167 -------~~~~~----~~----~~---------~~--~~~-----~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d- 214 (365)
-..|. .. +. .. ..+ .-.|+|+++|+++|.=+.++|.+|++||||+++|
T Consensus 124 tL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS 203 (613)
T KOG0061|consen 124 TLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDS 203 (613)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcch
Confidence 00111 00 00 00 112 2369999999999999999999999999999999
Q ss_pred ------HHHHHHHHHcCcEEEEEEcCcc-hhHHhhhHHHHHHHcCcEEEEecCHHHHH
Q 017797 215 ------AHACRSIAERGVMLIGTAHGEW-LENIIKNPILSDLIGGVDTVTLGDEEARA 265 (365)
Q Consensus 215 ------~~~i~~~~~~G~tVi~t~H~~~-~~~~~~d~i~~~ll~~g~iv~~g~~~~~~ 265 (365)
+++++.++++|+|||.|.|..+ .+-.+-|+++ ++..|+.++.|.+++..
T Consensus 204 ~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~--lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 204 FSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLL--LLSEGEVVYSGSPRELL 259 (613)
T ss_pred hhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhh--hhcCCcEEEecCHHHHH
Confidence 3678888888999999999976 4456789999 99999999999998764
No 371
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=8.3e-20 Score=162.46 Aligned_cols=163 Identities=15% Similarity=0.180 Sum_probs=120.3
Q ss_pred eeeEEEEECCccc---CcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC-------------
Q 017797 97 IVGLTCRVGRAVS---GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS------------- 160 (365)
Q Consensus 97 i~~l~~r~~~~~~---~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~------------- 160 (365)
++++.+.|.+..+ .+++.++..+.+|+++-|+|.||||||||+++|+|.+.++. ++|.+....
T Consensus 4 ~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~-G~I~Idg~dVtk~~~~~RA~~l 82 (263)
T COG1101 4 LSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS-GQILIDGVDVTKKSVAKRANLL 82 (263)
T ss_pred cccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCC-ceEEECceecccCCHHHHhhHH
Confidence 4466666655443 45888999999999999999999999999999999999984 444432211
Q ss_pred ------CcccCC------------------CCCch--h---------hh-----h----hhhhccCCCcchhHHHHHHHH
Q 017797 161 ------NEIGGD------------------GDIPH--S---------AI-----G----TARRMQVPEPSLQHKVMIEAV 196 (365)
Q Consensus 161 ------~ei~~~------------------~~~~~--~---------~~-----~----~~~~~~~~S~g~~~r~~la~a 196 (365)
+.-+-+ .++.. + .+ + ...+++.+||||+|.+.+..|
T Consensus 83 arVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MA 162 (263)
T COG1101 83 ARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMA 162 (263)
T ss_pred HHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHH
Confidence 100000 00000 0 00 0 014567789999999999999
Q ss_pred HhhCCCEEEEcCCCcHHHHHH---HHH----H-HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHH
Q 017797 197 ENHMPEVIIVDEIGTEAEAHA---CRS----I-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEE 262 (365)
Q Consensus 197 l~~~P~vlilDEp~~~~d~~~---i~~----~-~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~ 262 (365)
-.+.|++|++||-|+.+|+.. +.+ + .+...|.+++||.+..+-.+.+|.+ ++++|+||.+-..+
T Consensus 163 tl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlI--mLh~G~IvlDv~g~ 234 (263)
T COG1101 163 TLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLI--MLHSGKIVLDVTGE 234 (263)
T ss_pred hcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEE--EEeCCeEEEEcccc
Confidence 999999999999999999643 222 2 3557899999999999999999999 99999999874333
No 372
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.80 E-value=1.2e-19 Score=204.19 Aligned_cols=152 Identities=12% Similarity=0.095 Sum_probs=114.9
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc----cCC-----------------CCeEEEEcCCCcccCC----
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS----DEF-----------------QKRVVIVDTSNEIGGD---- 166 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~----~~~-----------------~~~i~~i~~~~ei~~~---- 166 (365)
++++++.+++|++++|+|||||||||||++|+|... +.. .+.+.++.+...+...
T Consensus 77 L~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~ 156 (1394)
T TIGR00956 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVG 156 (1394)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHH
Confidence 899999999999999999999999999999999863 221 1225555543221100
Q ss_pred ---------C-------CCchhh-----hhh-h----------h-----hccCCCcchhHHHHHHHHHhhCCCEEEEcCC
Q 017797 167 ---------G-------DIPHSA-----IGT-A----------R-----RMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (365)
Q Consensus 167 ---------~-------~~~~~~-----~~~-~----------~-----~~~~~S~g~~~r~~la~al~~~P~vlilDEp 209 (365)
. ...... ... . . ....+|+|||||+.+|++++.+|+++++|||
T Consensus 157 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEP 236 (1394)
T TIGR00956 157 ETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNA 236 (1394)
T ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCC
Confidence 0 011100 000 0 0 1234799999999999999999999999999
Q ss_pred CcHHHH-------HHHHHHHH-cCcEEEEEEcCc-chhHHhhhHHHHHHHcCcEEEEecCHHHHH
Q 017797 210 GTEAEA-------HACRSIAE-RGVMLIGTAHGE-WLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (365)
Q Consensus 210 ~~~~d~-------~~i~~~~~-~G~tVi~t~H~~-~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~ 265 (365)
|+++|. +.++++++ .|.|||+++|+. +.+..++|+++ ++++|+++..|+++++.
T Consensus 237 TsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~--~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 237 TRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVI--VLYEGYQIYFGPADKAK 299 (1394)
T ss_pred CCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEE--EEeCCeEEEECCHHHHH
Confidence 999994 45666665 499999999996 57778999999 99999999999998764
No 373
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=2.3e-19 Score=151.42 Aligned_cols=141 Identities=14% Similarity=0.194 Sum_probs=105.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC-------------------CCeEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-------------------QKRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~-------------------~~~i~~i 157 (365)
+++++++.+.... +.++++.+.+|+++-|+||+|||||||+.-++|.+.+.. .++++++
T Consensus 5 l~nvsl~l~g~cL--La~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiL 82 (213)
T COG4136 5 LKNVSLRLPGSCL--LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGIL 82 (213)
T ss_pred eeeeeecCCCceE--EEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeee
Confidence 5688888877665 888999999999999999999999999999999997652 2445555
Q ss_pred cCCCcccCCC--------CCchhhhhh-------------------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCC
Q 017797 158 DTSNEIGGDG--------DIPHSAIGT-------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (365)
Q Consensus 158 ~~~~ei~~~~--------~~~~~~~~~-------------------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~ 210 (365)
.+...+...- .+|...-+. .+....+|+||+.|+++.++|...|+.+++|||+
T Consensus 83 FQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPF 162 (213)
T COG4136 83 FQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPF 162 (213)
T ss_pred ecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCch
Confidence 4443321100 001000000 1334567999999999999999999999999999
Q ss_pred cHHHHH--------HHHHHHHcCcEEEEEEcCcchhH
Q 017797 211 TEAEAH--------ACRSIAERGVMLIGTAHGEWLEN 239 (365)
Q Consensus 211 ~~~d~~--------~i~~~~~~G~tVi~t~H~~~~~~ 239 (365)
+.+|.. .+.++.+.|...+.+||+...+.
T Consensus 163 S~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 163 SRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 999952 34556778999999999987554
No 374
>PLN03140 ABC transporter G family member; Provisional
Probab=99.80 E-value=1e-19 Score=204.51 Aligned_cols=154 Identities=14% Similarity=0.176 Sum_probs=117.3
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC---C---------------CCeEEEEcCCCcccC-------
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE---F---------------QKRVVIVDTSNEIGG------- 165 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~---~---------------~~~i~~i~~~~ei~~------- 165 (365)
.++++++.+++|++++|+|||||||||||++|+|.+.++ . .+.+.|+.+...+..
T Consensus 180 IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~Et 259 (1470)
T PLN03140 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKET 259 (1470)
T ss_pred eccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHH
Confidence 499999999999999999999999999999999999765 1 123555554422110
Q ss_pred ------CCCC----------ch----------hh-------------------------hhhh---------hhccCCCc
Q 017797 166 ------DGDI----------PH----------SA-------------------------IGTA---------RRMQVPEP 185 (365)
Q Consensus 166 ------~~~~----------~~----------~~-------------------------~~~~---------~~~~~~S~ 185 (365)
.... .. .. ++.. .....+|+
T Consensus 260 L~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSG 339 (1470)
T PLN03140 260 LDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISG 339 (1470)
T ss_pred HHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCc
Confidence 0000 00 00 0000 11235799
Q ss_pred chhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCc-chhHHhhhHHHHHHHcCcEEE
Q 017797 186 SLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGE-WLENIIKNPILSDLIGGVDTV 256 (365)
Q Consensus 186 g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~-~~~~~~~d~i~~~ll~~g~iv 256 (365)
|||||+.++++++.+|+++++||||+++|. +.++++++ .|.|+|+++|+. +++..++|+++ ++.+|+++
T Consensus 340 GerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vi--lL~~G~iv 417 (1470)
T PLN03140 340 GQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDII--LLSEGQIV 417 (1470)
T ss_pred ccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEE--EeeCceEE
Confidence 999999999999999999999999999994 45666655 589999999986 47778999999 99999999
Q ss_pred EecCHHHHHH
Q 017797 257 TLGDEEARAR 266 (365)
Q Consensus 257 ~~g~~~~~~~ 266 (365)
..|+++++..
T Consensus 418 y~G~~~~~~~ 427 (1470)
T PLN03140 418 YQGPRDHILE 427 (1470)
T ss_pred EeCCHHHHHH
Confidence 9999988753
No 375
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=3.5e-19 Score=175.31 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=115.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcc---ccCCCCeEEEEcCC-------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL---SDEFQKRVVIVDTS------------- 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll---~~~~~~~i~~i~~~------------- 160 (365)
+.++++.|+.+.. +..-+..+..|.-++++|+||+|||||||+|+.-- -+. ...+...+..
T Consensus 83 ~~~fdLa~G~k~L--L~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~v-eqE~~g~~t~~~~~~l~~D~~~~ 159 (582)
T KOG0062|consen 83 IDNFDLAYGGKIL--LNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHV-EQEVRGDDTEALQSVLESDTERL 159 (582)
T ss_pred eeeeeeeecchhh--hcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCc-hhheeccchHHHhhhhhccHHHH
Confidence 4578899998877 88888899999999999999999999999999811 111 0111111100
Q ss_pred ------CcccCCCCCchh-----hh---h-----hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHH
Q 017797 161 ------NEIGGDGDIPHS-----AI---G-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI 221 (365)
Q Consensus 161 ------~ei~~~~~~~~~-----~~---~-----~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~ 221 (365)
.++. ...... .+ + ....+..+|||.+.|+++|||+..+||+|+|||||+.+|+.++..+
T Consensus 160 dfl~~e~~l~--~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WL 237 (582)
T KOG0062|consen 160 DFLAEEKELL--AGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWL 237 (582)
T ss_pred HHHHhhhhhh--ccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHH
Confidence 0000 000000 00 0 0134566899999999999999999999999999999998766554
Q ss_pred ----HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEE-EEecCHHHHHH
Q 017797 222 ----AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT-VTLGDEEARAR 266 (365)
Q Consensus 222 ----~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~i-v~~g~~~~~~~ 266 (365)
...+.|+|+++||.++.+.+|..|+ =.++-++ .+.|+-++...
T Consensus 238 e~yL~t~~~T~liVSHDr~FLn~V~tdII--H~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 238 ENYLQTWKITSLIVSHDRNFLNTVCTDII--HLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred HHHHhhCCceEEEEeccHHHHHHHHHHHH--HHhhhhhhhhcCcHHHHHH
Confidence 3457899999999999999999988 3444453 34477766554
No 376
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=99.79 E-value=1.5e-18 Score=163.73 Aligned_cols=214 Identities=18% Similarity=0.206 Sum_probs=141.0
Q ss_pred HhcccCCCCeEEEEEecCCceEEEEeCccCceecCCCCCCHHHHHHHHHHHhcc--------CCCeeeEec--CceEEEE
Q 017797 19 LQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEF--------GGDNRAGIE--GTLHRIS 88 (365)
Q Consensus 19 l~~~~~~~~~~ei~l~~g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~--------~~~~~~~~~--g~~~rv~ 88 (365)
|+++.+..+++||++..+.++.+...|.. .......++.+++..+++.+... ..-.+..+. +.|+|+.
T Consensus 4 l~~~l~d~~~sdI~i~~~~~v~v~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~~~~~~~~R~~i~ 81 (270)
T PF00437_consen 4 LEPLLDDPEVSDIHINGPDEVWVKRIGGW--VRSPVRFLSEEELERLIRRLASAAGREINERNPIQDGELPGDGIRVRIT 81 (270)
T ss_dssp HHHHHHHTTECEEEEESTTEEEEEETTEE--EEEESTTCGHHHHHHHHHHHHHHTTHHHHCCSSEEEEEECTTSEEEEEE
T ss_pred hhHhhCCCCCEEEEEECCCeEEEEEcCcE--EEEeCCCCCHHHHHHHHHHHHHHhhhhHHhhCcceeeEEeeCCeEEEEE
Confidence 34443347899999999998777555542 24445678999999888877322 122445555 3345554
Q ss_pred EEEecCCceeeEEEEECCcccCcc--------------hhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeE
Q 017797 89 AIRSRKGAIVGLTCRVGRAVSGHI--------------DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV 154 (365)
Q Consensus 89 ~~~~~~~~i~~l~~r~~~~~~~~~--------------~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i 154 (365)
..-...++ .+++|......-.+ +-+...++.++.++|.||+||||||++++++..+++. ..++
T Consensus 82 ~~p~~~~~--~~~iR~~~~~~~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~-~~~i 158 (270)
T PF00437_consen 82 TPPVSGGP--TIVIRKFSSKPFSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE-DERI 158 (270)
T ss_dssp ETTTSTSE--EEEEEEETSS--CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT-TSEE
T ss_pred EcCCcCCc--ccceeccccccccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc-ccce
Confidence 44343445 89999544333111 1222334558899999999999999999999999886 5899
Q ss_pred EEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEE-EEEEc
Q 017797 155 VIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVML-IGTAH 233 (365)
Q Consensus 155 ~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tV-i~t~H 233 (365)
++++++.|+... +..... .....+...+.-++..+|+++||+|+++|+++.+...+ ..++++|+.+ +.|.|
T Consensus 159 v~iEd~~E~~l~----~~~~~~---~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~-~~a~~tGh~~~~tT~H 230 (270)
T PF00437_consen 159 VTIEDPPELRLP----GPNQIQ---IQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEA-IQAANTGHLGSLTTLH 230 (270)
T ss_dssp EEEESSS-S--S----CSSEEE---EEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHH-HHHHHTT-EEEEEEEE
T ss_pred EEeccccceeec----ccceEE---EEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHH-HHhhccCCceeeeeee
Confidence 999999988542 111100 00003455667789999999999999999999988888 7888999999 99999
Q ss_pred CcchhHHhhhHHH
Q 017797 234 GEWLENIIKNPIL 246 (365)
Q Consensus 234 ~~~~~~~~~d~i~ 246 (365)
..+..+.+ +++.
T Consensus 231 a~s~~~~i-~Rl~ 242 (270)
T PF00437_consen 231 ANSAEDAI-ERLA 242 (270)
T ss_dssp -SSHHHHH-HHHH
T ss_pred cCCHHHHH-HHHH
Confidence 99966654 3554
No 377
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.79 E-value=6.5e-19 Score=174.32 Aligned_cols=163 Identities=17% Similarity=0.174 Sum_probs=122.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCC----------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------- 166 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~---------- 166 (365)
+.++++.|.+... +.+..+.+.+|+.++|+|||||||||+|++|.+-..|. ..++.+.....++...
T Consensus 78 ~~sls~s~~g~~l--~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~-p~~~d~y~ls~e~~ps~~~av~~v~~ 154 (614)
T KOG0927|consen 78 IESLSLSFHGVEL--IKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI-PEHIDFYLLSREIEPSEKQAVQAVVM 154 (614)
T ss_pred eeeeeeccCCcee--eeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC-CcccchhhhcccCCCchHHHHHHHhh
Confidence 7799999988877 99999999999999999999999999999999998875 3333333222222100
Q ss_pred -----------------CCCch---hhh-------------------------------hhhhhccCCCcchhHHHHHHH
Q 017797 167 -----------------GDIPH---SAI-------------------------------GTARRMQVPEPSLQHKVMIEA 195 (365)
Q Consensus 167 -----------------~~~~~---~~~-------------------------------~~~~~~~~~S~g~~~r~~la~ 195 (365)
....+ ... ...+++.-+|+|++.|+++|+
T Consensus 155 ~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr 234 (614)
T KOG0927|consen 155 ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALAR 234 (614)
T ss_pred hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHH
Confidence 00000 000 001344556999999999999
Q ss_pred HHhhCCCEEEEcCCCcHHHHHHHHHH----HHcCc-EEEEEEcCcchhHHhhhHHHHHHHcCcEEEEe-cCHHHH
Q 017797 196 VENHMPEVIIVDEIGTEAEAHACRSI----AERGV-MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEAR 264 (365)
Q Consensus 196 al~~~P~vlilDEp~~~~d~~~i~~~----~~~G~-tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~-g~~~~~ 264 (365)
+|..+|++|+|||||+++|.+++..+ ++... ++++++|+.++...+|..++ =+..++.+.+ |+.+..
T Consensus 235 ~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii--~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 235 ALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNII--HLDNKKLIYYEGNYDQY 307 (614)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhh--eecccceeeecCCHHHH
Confidence 99999999999999999998876554 34444 89999999999999999999 6777785555 555543
No 378
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.5e-19 Score=154.84 Aligned_cols=136 Identities=21% Similarity=0.230 Sum_probs=99.4
Q ss_pred eeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc-----c-------cC
Q 017797 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-----I-------GG 165 (365)
Q Consensus 98 ~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~e-----i-------~~ 165 (365)
++|+..-+.... +.+++|.+.+|+.+-|.||||||||||||+|+|++.|+ .++|.+-+.+.. + ++
T Consensus 6 ~~L~~~R~e~~l--f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~-~G~v~~~~~~i~~~~~~~~~~l~yLGH 82 (209)
T COG4133 6 ENLSCERGERTL--FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD-AGEVYWQGEPIQNVRESYHQALLYLGH 82 (209)
T ss_pred hhhhhccCccee--ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC-CCeEEecCCCCccchhhHHHHHHHhhc
Confidence 366666666666 89999999999999999999999999999999999998 456665533221 1 11
Q ss_pred CCCCch--------------------hhhhh-h----------hhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHH
Q 017797 166 DGDIPH--------------------SAIGT-A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (365)
Q Consensus 166 ~~~~~~--------------------~~~~~-~----------~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d 214 (365)
..++.. ..+.. . ..+..+|.|||+|+++|+..+..+++.|+|||++.+|
T Consensus 83 ~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLD 162 (209)
T COG4133 83 QPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162 (209)
T ss_pred cccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccC
Confidence 011100 00000 0 2234569999999999999999999999999999999
Q ss_pred HH-------HHHHHHHcCcEEEEEEcCcc
Q 017797 215 AH-------ACRSIAERGVMLIGTAHGEW 236 (365)
Q Consensus 215 ~~-------~i~~~~~~G~tVi~t~H~~~ 236 (365)
.+ .+..-+.+|-.||.|||..-
T Consensus 163 k~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 163 KEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 53 23334577889999999864
No 379
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.8e-19 Score=174.79 Aligned_cols=166 Identities=20% Similarity=0.211 Sum_probs=120.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
++|+++.|....+ .+.+++|.+.+|+.++++||+|+||||+||.|.++..-+.| .+|++++
T Consensus 540 fsnvtF~Y~p~k~-vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVP 618 (790)
T KOG0056|consen 540 FSNVTFAYDPGKP-VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVP 618 (790)
T ss_pred EEEeEEecCCCCc-eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCccc
Confidence 5689999977653 58999999999999999999999999999999999865532 2233333
Q ss_pred CCCcccCC----------CCCc-------------hhhhhh---------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD----------GDIP-------------HSAIGT---------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~----------~~~~-------------~~~~~~---------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+..-+..+ ..-. |..+.. .+|---+|||+|||+++||+++.+|.+|++
T Consensus 619 QDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlL 698 (790)
T KOG0056|consen 619 QDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILL 698 (790)
T ss_pred CcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEE
Confidence 32111000 0000 000000 012223699999999999999999999999
Q ss_pred cCCCcHHHH---HHHHHH---HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEA---HACRSI---AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~---~~i~~~---~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||.|+.+|. .+++.+ .-.+.|-|++.|.++.+ .-+|.++ ++++|+|++.|..+++..
T Consensus 699 DEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTi-vnAD~IL--vi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 699 DEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTI-VNADLIL--VISNGRIVERGRHEELLK 761 (790)
T ss_pred cchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehhe-ecccEEE--EEeCCeEeecCcHHHHHh
Confidence 999999993 233322 23478888999999866 3588899 999999999999998875
No 380
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.78 E-value=7.1e-19 Score=164.86 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=67.9
Q ss_pred ccCCCcchhHHHHHHHHHhhC---CCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHH
Q 017797 180 MQVPEPSLQHKVMIEAVENHM---PEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (365)
Q Consensus 180 ~~~~S~g~~~r~~la~al~~~---P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~l 249 (365)
...+|+|++||+.+++++..+ |+++++|||++++|. +.+..+.+.|.|||+++|+.+++. .||+++ .
T Consensus 167 ~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~ii--~ 243 (261)
T cd03271 167 ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWII--D 243 (261)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEE--E
Confidence 345699999999999999996 799999999999985 345556677999999999999885 699999 8
Q ss_pred H------cCcEEEEecCH
Q 017797 250 I------GGVDTVTLGDE 261 (365)
Q Consensus 250 l------~~g~iv~~g~~ 261 (365)
+ ++|++++.|++
T Consensus 244 Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 244 LGPEGGDGGGQVVASGTP 261 (261)
T ss_pred ecCCcCCCCCEEEEeCCC
Confidence 8 78999998864
No 381
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=8.1e-19 Score=150.90 Aligned_cols=136 Identities=17% Similarity=0.215 Sum_probs=104.5
Q ss_pred CcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccc------------------CC-----
Q 017797 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG------------------GD----- 166 (365)
Q Consensus 110 ~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~------------------~~----- 166 (365)
..++++++.+..|+++.+-||+||||||+||+|-+.+.|+. ++|.+-.+...+. +.
T Consensus 25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~-G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE-GQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCC-ceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence 34789999999999999999999999999999999999984 4454432211110 00
Q ss_pred -----------------CCCchhhhh-----hhhh-----------ccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHH
Q 017797 167 -----------------GDIPHSAIG-----TARR-----------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (365)
Q Consensus 167 -----------------~~~~~~~~~-----~~~~-----------~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~ 213 (365)
.+++..... .+.+ ....|||+|||+-|++.+..+-.+|++||||+.+
T Consensus 104 viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasL 183 (235)
T COG4778 104 VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183 (235)
T ss_pred hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccc
Confidence 011110000 0011 2345999999999999999999999999999999
Q ss_pred H-------HHHHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 214 E-------AHACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 214 d-------~~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
| ++++.+.+.+|..++.+-||.+.-+.+||+++
T Consensus 184 Da~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~ 223 (235)
T COG4778 184 DATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLL 223 (235)
T ss_pred cccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhhee
Confidence 8 47888889999999999999998899999988
No 382
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=99.77 E-value=6.6e-17 Score=156.68 Aligned_cols=218 Identities=18% Similarity=0.136 Sum_probs=146.2
Q ss_pred HHhcccCCCCeEEEEEecCCceEEEEeCccCceecCCCCCCHHHHHHHHHHHhcc--------CCCeeeEecCceEEEEE
Q 017797 18 RLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEF--------GGDNRAGIEGTLHRISA 89 (365)
Q Consensus 18 ~l~~~~~~~~~~ei~l~~g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~--------~~~~~~~~~g~~~rv~~ 89 (365)
.|+.+.....++||++....++.++..|.+. ......++.++++.+++.+..+ .-...+.+++ ..|+++
T Consensus 14 ~l~~ll~d~~vtEI~iN~~~~v~v~~~G~~~--~~~~~~~~~~~~~~l~~~ia~~~~~~i~~~~P~l~~~Lp~-G~Rv~~ 90 (332)
T PRK13900 14 PLKNIFAEDGVNEISINKPGEVWVEKKGDIR--CEQIPELDLSHLKALGRLVAQATEQKISEEKPLLSATLPN-GYRIQI 90 (332)
T ss_pred hHHHHhcCCCCEEEEECCCCEEEEEECCcEE--EecCCCCCHHHHHHHHHHHHHHcCCcccCCCceEEEEcCC-CeEEEE
Confidence 3444444578999999999999999888653 3334568999999988877433 1122333332 157777
Q ss_pred EEe----cCCceeeEEEEECCcccCcchh-----------------------------------hhhcccCCcEEEEEcC
Q 017797 90 IRS----RKGAIVGLTCRVGRAVSGHIDM-----------------------------------VYDLLHYGKSILFVGR 130 (365)
Q Consensus 90 ~~~----~~~~i~~l~~r~~~~~~~~~~~-----------------------------------l~~~l~~g~~v~iiGp 130 (365)
... .++. .+++|......-.+++ +...+..+..++|+|+
T Consensus 91 ~~~p~~~~~~~--~~~IRk~~~~~~sl~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~~v~~~~nili~G~ 168 (332)
T PRK13900 91 VFPPACEIGQI--VYSIRKPSGMQLTLDDYEKMGAFDETATESLVDEDDVILNELLAEKKIKEFLEHAVISKKNIIISGG 168 (332)
T ss_pred EcCCcccCCCc--eEEEECCCCCCCCHHHHHhcCCCCcccccccccchhhhhhhhhhhHHHHHHHHHHHHcCCcEEEECC
Confidence 652 2234 6788876543311111 2222456789999999
Q ss_pred CCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhh-hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCC
Q 017797 131 PGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (365)
Q Consensus 131 nGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~-~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp 209 (365)
+||||||||++|+..+++ ..+|+++++..|+.... .+. .... ..+....+......-.+..+|+++||+|+++|.
T Consensus 169 tgSGKTTll~aL~~~ip~--~~ri~tiEd~~El~l~~-~~n-~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~IivGEi 244 (332)
T PRK13900 169 TSTGKTTFTNAALREIPA--IERLITVEDAREIVLSN-HPN-RVHLLASKGGQGRAKVTTQDLIEACLRLRPDRIIVGEL 244 (332)
T ss_pred CCCCHHHHHHHHHhhCCC--CCeEEEecCCCcccccc-CCC-EEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEEEEec
Confidence 999999999999999977 47899999999985311 111 1110 011112223345566889999999999999999
Q ss_pred CcHHHHHHHHHHHHcCcE-EEEEEcCcchhHHhhhHHH
Q 017797 210 GTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 210 ~~~~d~~~i~~~~~~G~t-Vi~t~H~~~~~~~~~d~i~ 246 (365)
++.+... +.++.++||. ++.|.|..+..+.+ +++.
T Consensus 245 R~~ea~~-~l~a~~tGh~G~~tTiHa~s~~~ai-~Rl~ 280 (332)
T PRK13900 245 RGAEAFS-FLRAINTGHPGSISTLHADSPAMAI-EQLK 280 (332)
T ss_pred CCHHHHH-HHHHHHcCCCcEEEEEecCCHHHHH-HHHH
Confidence 9986554 5667889996 89999999976654 4443
No 383
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.76 E-value=6.8e-19 Score=152.02 Aligned_cols=151 Identities=15% Similarity=0.170 Sum_probs=114.2
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc------cc-------------CC------
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE------IG-------------GD------ 166 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~e------i~-------------~~------ 166 (365)
+-.++..+..|+++-++|||||||||||..|+|+++.. +.|.+-..+-+ ++ +.
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~s--Gsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS--GSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCCCC--ceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 55677788999999999999999999999999999753 44554333221 10 00
Q ss_pred --CCCchhhhh---------------hhhhccCCCcchhHHHHHHHHHhh-----C--CCEEEEcCCCcHHHH-------
Q 017797 167 --GDIPHSAIG---------------TARRMQVPEPSLQHKVMIEAVENH-----M--PEVIIVDEIGTEAEA------- 215 (365)
Q Consensus 167 --~~~~~~~~~---------------~~~~~~~~S~g~~~r~~la~al~~-----~--P~vlilDEp~~~~d~------- 215 (365)
-..|..... ..+.+..+|+|+.||+-+|+..++ + .+++++|||.+.+|+
T Consensus 93 L~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLd 172 (248)
T COG4138 93 LTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD 172 (248)
T ss_pred hhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHH
Confidence 000111000 013455679999999999887654 3 368999999999995
Q ss_pred HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 216 HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 216 ~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
..+..++.+|.+||+++||.+-.-.-+|+++ ++.+|+++..|..+++++
T Consensus 173 rll~~~c~~G~~vims~HDLNhTLrhA~~~w--LL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 173 RLLSALCQQGLAIVMSSHDLNHTLRHAHRAW--LLKRGKLLASGRREEVLT 221 (248)
T ss_pred HHHHHHHhCCcEEEEeccchhhHHHHHHHHH--HHhcCeEEeecchhhhcC
Confidence 3566678899999999999998888899999 999999999999999876
No 384
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.75 E-value=2e-18 Score=155.76 Aligned_cols=130 Identities=13% Similarity=0.163 Sum_probs=90.0
Q ss_pred hhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC------------------------CCeEEEEcCCCcccCCCC
Q 017797 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF------------------------QKRVVIVDTSNEIGGDGD 168 (365)
Q Consensus 113 ~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~------------------------~~~i~~i~~~~ei~~~~~ 168 (365)
+.+++.+.+| +++|+||||||||||+++|++++.+.. ..+|.++.+.....+. .
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~-~ 91 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYS-I 91 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCcee-E
Confidence 4456667888 999999999999999999999875431 1234444443322110 0
Q ss_pred Cchhhhh--------hhhhccCCCcchhHHHHHHHHHh----hCCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEE
Q 017797 169 IPHSAIG--------TARRMQVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLI 229 (365)
Q Consensus 169 ~~~~~~~--------~~~~~~~~S~g~~~r~~la~al~----~~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi 229 (365)
.+...+. ..+....+|+|++|+++++++++ ..|+++++|||++++|.. .+.++.+ +.+||
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiI 170 (197)
T cd03278 92 ISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQFI 170 (197)
T ss_pred EehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEE
Confidence 0000000 11335567999999999999987 466999999999999963 3333333 78999
Q ss_pred EEEcCcchhHHhhhHHH
Q 017797 230 GTAHGEWLENIIKNPIL 246 (365)
Q Consensus 230 ~t~H~~~~~~~~~d~i~ 246 (365)
++||+.++++ .||+++
T Consensus 171 iitH~~~~~~-~~d~v~ 186 (197)
T cd03278 171 VITHRKGTME-AADRLY 186 (197)
T ss_pred EEECCHHHHh-hcceEE
Confidence 9999998764 688877
No 385
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=99.75 E-value=1.2e-16 Score=153.04 Aligned_cols=209 Identities=17% Similarity=0.203 Sum_probs=140.4
Q ss_pred CCCCeEEEEEecCCceEEEEeCccCceecCCCCCCHHHHHHHHHHHhccCC----Cee----eEecCceEEEEEEEe--c
Q 017797 24 KRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFGG----DNR----AGIEGTLHRISAIRS--R 93 (365)
Q Consensus 24 ~~~~~~ei~l~~g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~~~----~~~----~~~~g~~~rv~~~~~--~ 93 (365)
..+.++||.+.....+.++..|... ... ..+|.+++..+++.+..+.+ ..+ ..++-...|+++... .
T Consensus 15 ~d~~v~eI~in~~~~v~v~~~g~~~--~~~-~~~s~~~~~~l~~~la~~~g~~~~~~~P~~~~~lp~~g~R~~~~~~p~~ 91 (299)
T TIGR02782 15 DDPGVVEIMLNPDGRLWVERLGSGM--SPL-GEMSPADAQRIIGLVADYLGTEVDRDKPIVEGELPLDGSRFEGLIPPVV 91 (299)
T ss_pred cCCCceEEEEcCCCeEEEEECCceE--Eec-CCCCHHHHHHHHHHHHHHhCCeecCCCCEEEEEECCCCEEEEEEecCcc
Confidence 3478999999998888888766421 222 33899999999887743311 112 223201257765443 2
Q ss_pred CCceeeEEEEECCcccCcchh--------------hhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC-CCCeEEEEc
Q 017797 94 KGAIVGLTCRVGRAVSGHIDM--------------VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVD 158 (365)
Q Consensus 94 ~~~i~~l~~r~~~~~~~~~~~--------------l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~-~~~~i~~i~ 158 (365)
.|+ .+++|........++. +...+..+..++|+||+||||||++++|++.+++. ...++++++
T Consensus 92 ~g~--~i~IRk~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiE 169 (299)
T TIGR02782 92 AAP--SFAIRKKAVAVFTLDDYVEAGIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIE 169 (299)
T ss_pred CCc--EEEEECcCCCCCCHHHHHhcCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEEC
Confidence 356 8999986544322222 33345667899999999999999999999998642 257899999
Q ss_pred CCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcE-EEEEEcCcch
Q 017797 159 TSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWL 237 (365)
Q Consensus 159 ~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~t-Vi~t~H~~~~ 237 (365)
++.|+.... .+.+. +....+.....-++..+|+++||+|+++|.++.+... +.+++++||. ++.|.|..+.
T Consensus 170 d~~El~~~~---~~~v~----~~~~~~~~~~~~~l~~aLR~~pD~iivGEiR~~ea~~-~l~a~~tGh~G~~tTiHa~~~ 241 (299)
T TIGR02782 170 DTRELQCAA---PNVVQ----LRTSDDAISMTRLLKATLRLRPDRIIVGEVRGGEALD-LLKAWNTGHPGGIATIHANNA 241 (299)
T ss_pred CchhhcCCC---CCEEE----EEecCCCCCHHHHHHHHhcCCCCEEEEeccCCHHHHH-HHHHHHcCCCCeEEeeccCCH
Confidence 998875310 11111 1111111145568999999999999999999986544 5677789996 8999999997
Q ss_pred hHHhhhHHH
Q 017797 238 ENIIKNPIL 246 (365)
Q Consensus 238 ~~~~~d~i~ 246 (365)
.+.+. ++.
T Consensus 242 ~~ai~-Rl~ 249 (299)
T TIGR02782 242 KAALD-RLE 249 (299)
T ss_pred HHHHH-HHH
Confidence 76553 443
No 386
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=99.75 E-value=1.3e-16 Score=154.98 Aligned_cols=211 Identities=18% Similarity=0.182 Sum_probs=143.4
Q ss_pred HhcccCCCCeEEEEEecCCceEEEEeCccCceecCCCCCCHHHHHHHHHHHhcc--------CCCeeeEecCceEEEEEE
Q 017797 19 LQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEF--------GGDNRAGIEGTLHRISAI 90 (365)
Q Consensus 19 l~~~~~~~~~~ei~l~~g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~--------~~~~~~~~~g~~~rv~~~ 90 (365)
|+++...++++||.+.....+.++..|.+. ... .+++.++++.++..+..+ .-..++.+++. .|+++.
T Consensus 14 l~~~l~Dp~V~EI~iN~~~~V~v~~~g~~~--~~~-~~l~~~~~~~l~~~~a~~~~~~~~~~~Pil~a~LpdG-~Rv~~v 89 (344)
T PRK13851 14 VLEWLDDPRTEEVAINRPGEAFVRQAGVFT--KFP-LPLSYDDLEDIAILAGALRKQDVGPRNPLCATELPGG-ERLQIC 89 (344)
T ss_pred HHHHhcCCCCEEEEECCCCeEEEEECCEEE--EcC-CCCCHHHHHHHHHHHHHhcCCccccCCcEEEEECCCC-eEEEEE
Confidence 333334578999999988888888777653 333 369999999877666433 22334445431 455555
Q ss_pred E----ecCCceeeEEEEECCcccCcchh---------------------------------------hhhcccCCcEEEE
Q 017797 91 R----SRKGAIVGLTCRVGRAVSGHIDM---------------------------------------VYDLLHYGKSILF 127 (365)
Q Consensus 91 ~----~~~~~i~~l~~r~~~~~~~~~~~---------------------------------------l~~~l~~g~~v~i 127 (365)
. ..+.. ++++|........++. +...+..+..++|
T Consensus 90 ~pP~~~~g~~--sitIRk~~~~~~tl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~nilI 167 (344)
T PRK13851 90 LPPTVPSGTV--SLTIRRPSSRVSELKEVSSRYDASRWNQWQERRKRRDQLDEAILRHYDNGDLEAFLHACVVGRLTMLL 167 (344)
T ss_pred ecccccCCce--EEEEEccCCCCCCHHHHHhhhcccccccccccccccchhhhhhhhccccHHHHHHHHHHHHcCCeEEE
Confidence 4 33445 7888886554311211 2233567889999
Q ss_pred EcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhh-hhh-hhhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 128 VGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSA-IGT-ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 128 iGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~-~~~-~~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
.||+|||||||+++|++.++++ .+++++++..|+.. ++.. ... ..+-+...++....-.+..+|+++||.|+
T Consensus 168 ~G~tGSGKTTll~aLl~~i~~~--~rivtiEd~~El~l----~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Ii 241 (344)
T PRK13851 168 CGPTGSGKTTMSKTLISAIPPQ--ERLITIEDTLELVI----PHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRIL 241 (344)
T ss_pred ECCCCccHHHHHHHHHcccCCC--CCEEEECCCccccC----CCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEE
Confidence 9999999999999999999874 67899999988753 2111 100 01111223345666789999999999999
Q ss_pred EcCCCcHHHHHHHHHHHHcCcE-EEEEEcCcchhHHhh
Q 017797 206 VDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIK 242 (365)
Q Consensus 206 lDEp~~~~d~~~i~~~~~~G~t-Vi~t~H~~~~~~~~~ 242 (365)
++|.++.+.+. +..++.+|+. ++.|.|..+..+.+.
T Consensus 242 vGEiR~~ea~~-~l~a~~tGh~G~ltTiHa~s~~~a~~ 278 (344)
T PRK13851 242 LGEMRDDAAWA-YLSEVVSGHPGSISTIHGANPVQGFK 278 (344)
T ss_pred EEeeCcHHHHH-HHHHHHhCCCcEEECCCCCCHHHHHH
Confidence 99999987555 4556678886 999999999776544
No 387
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.74 E-value=1e-17 Score=183.63 Aligned_cols=167 Identities=13% Similarity=0.162 Sum_probs=127.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++.||....+..+++|++.+++|+-+||+|.+|||||||+.+|-++..|..| .++.+++
T Consensus 1141 f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIP 1220 (1381)
T KOG0054|consen 1141 FEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIP 1220 (1381)
T ss_pred EEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeC
Confidence 5699999998877779999999999999999999999999999999999987632 2333444
Q ss_pred CCCcccCCCCC----------chhhhhh-h---------------------hhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGDGDI----------PHSAIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~~~~----------~~~~~~~-~---------------------~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
|.+-+. .+.+ ....+-. . +.-..+|-||+|-+.+||||+.+.+||++
T Consensus 1221 QdPvLF-sGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvL 1299 (1381)
T KOG0054|consen 1221 QDPVLF-SGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVL 1299 (1381)
T ss_pred CCCcee-cCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEE
Confidence 433221 1111 1111100 0 11123488999999999999999999999
Q ss_pred cCCCcHHHHH---HHHHH-HH--cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 207 DEIGTEAEAH---ACRSI-AE--RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 207 DEp~~~~d~~---~i~~~-~~--~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
||.|+..|.+ .+++. ++ .++|||.+.|..+.+. =||+++ +|++|+++++|+|+.++++
T Consensus 1300 DEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVm-d~DrVl--Vld~G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1300 DEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVM-DSDRVL--VLDAGRVVEFDSPAELLSD 1363 (1381)
T ss_pred ecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhh-hcCeEE--EeeCCeEeecCChHHHHhC
Confidence 9999988852 33332 22 3799999999999774 499999 9999999999999999864
No 388
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.74 E-value=4.1e-18 Score=155.44 Aligned_cols=132 Identities=17% Similarity=0.101 Sum_probs=88.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCCCC-----------------eEEEEcCCCcccC----CCCCchhhh---
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVL-SDEFQK-----------------RVVIVDTSNEIGG----DGDIPHSAI--- 174 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll-~~~~~~-----------------~i~~i~~~~ei~~----~~~~~~~~~--- 174 (365)
.+|++++|+|||||||||++++|++.+ .+..+. .|.+..+.....+ ..++....+
T Consensus 26 ~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~ 105 (213)
T cd03279 26 DNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRI 105 (213)
T ss_pred CccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHh
Confidence 358899999999999999999999644 222111 1111111110000 001111000
Q ss_pred --------hh--hhhccCCCcchhHHHHHHHHHhh----------CCCEEEEcCCCcHHHH-------HHHHHHHHcCcE
Q 017797 175 --------GT--ARRMQVPEPSLQHKVMIEAVENH----------MPEVIIVDEIGTEAEA-------HACRSIAERGVM 227 (365)
Q Consensus 175 --------~~--~~~~~~~S~g~~~r~~la~al~~----------~P~vlilDEp~~~~d~-------~~i~~~~~~G~t 227 (365)
.. ......+|+|++|+++++++++. +|+++++|||++++|. +.+..+.++|.|
T Consensus 106 ~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~t 185 (213)
T cd03279 106 VLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRM 185 (213)
T ss_pred hhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 00 12345579999999999999975 6799999999999985 345555566999
Q ss_pred EEEEEcCcchhHHhhhHHHHHHHcCc
Q 017797 228 LIGTAHGEWLENIIKNPILSDLIGGV 253 (365)
Q Consensus 228 Vi~t~H~~~~~~~~~d~i~~~ll~~g 253 (365)
||++||+.+.+..+|++++ ++++|
T Consensus 186 ii~itH~~~~~~~~~~~i~--~~~~~ 209 (213)
T cd03279 186 VGVISHVEELKERIPQRLE--VIKTP 209 (213)
T ss_pred EEEEECchHHHHhhCcEEE--EEecC
Confidence 9999999999988898888 76654
No 389
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.73 E-value=2e-18 Score=145.94 Aligned_cols=99 Identities=18% Similarity=0.312 Sum_probs=70.0
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE-------------------EcCCCcccCCCCCchh
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGDGDIPHS 172 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~-------------------i~~~~ei~~~~~~~~~ 172 (365)
++++++.+.+|++++|+||||||||||+++|+|+..+.. +.|.+ +++...+.....+..+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~-G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDS-GSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESE-EEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence 357888999999999999999999999999999998862 33322 2221111000001100
Q ss_pred ----hh-------h----hhhhc----cCCCcchhHHHHHHHHHhhCCCEEEEcCCCc
Q 017797 173 ----AI-------G----TARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 173 ----~~-------~----~~~~~----~~~S~g~~~r~~la~al~~~P~vlilDEp~~ 211 (365)
.+ . ....+ ..+|+|++||+++++|+..+|++||+||||+
T Consensus 80 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 00 0 01222 6789999999999999999999999999986
No 390
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=1.7e-17 Score=181.90 Aligned_cols=165 Identities=14% Similarity=0.131 Sum_probs=126.0
Q ss_pred eeEEEEECCcc-cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCCcccCCCCCch
Q 017797 98 VGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGDGDIPH 171 (365)
Q Consensus 98 ~~l~~r~~~~~-~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----~~i~~i~~~~ei~~~~~~~~ 171 (365)
++.++...... ...+++|++.+++|+.++|+||.|||||+||.+|.|.++...| +.+.|++|.+.+.. +.+.+
T Consensus 522 ~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~n-gTvre 600 (1381)
T KOG0054|consen 522 KNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQN-GTVRE 600 (1381)
T ss_pred eeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhC-CcHHH
Confidence 35555554422 2368999999999999999999999999999999999987643 56788887665421 11111
Q ss_pred hhhhh--------------------------------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHH--
Q 017797 172 SAIGT--------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-- 217 (365)
Q Consensus 172 ~~~~~--------------------------------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~-- 217 (365)
+.+.. -++--.+|||||||+++|||.-++.|+.++|.|.+..|...
T Consensus 601 NILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~ 680 (1381)
T KOG0054|consen 601 NILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGK 680 (1381)
T ss_pred hhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhH
Confidence 11100 02222469999999999999999999999999999999633
Q ss_pred --HH---HHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 218 --CR---SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 218 --i~---~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+. .-.-+++|+|.+||...... -+|.++ +|++|+++..|+.+++..
T Consensus 681 ~if~~ci~~~L~~KT~ILVTHql~~L~-~ad~Ii--vl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 681 HIFEECIRGLLRGKTVILVTHQLQFLP-HADQII--VLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HHHHHHHHhhhcCCEEEEEeCchhhhh-hCCEEE--EecCCeEecccCHHHHHh
Confidence 22 22345799999999887664 599999 999999999999999885
No 391
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=8.7e-18 Score=162.23 Aligned_cols=166 Identities=19% Similarity=0.243 Sum_probs=122.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcc-------cCCCCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI-------GGDGDI 169 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei-------~~~~~~ 169 (365)
..++++.|....+ .+.++++.++.|+.++++||+|+||||++|.|-+++.+++| .|...++...- ...+.+
T Consensus 265 F~~V~F~y~~~r~-iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG-~I~id~qdir~vtq~slR~aIg~V 342 (497)
T COG5265 265 FINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG-SITIDGQDIRDVTQQSLRRAIGIV 342 (497)
T ss_pred EEEEEeeccccch-hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc-eEEEcchhHHHhHHHHHHHHhCcC
Confidence 4478888865443 48999999999999999999999999999999999988743 33332221100 000112
Q ss_pred chhhh----------------------hh----------------------hhhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 170 PHSAI----------------------GT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 170 ~~~~~----------------------~~----------------------~~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
|+... .. .++--.+|+|+|||+++||+++.+|.+++
T Consensus 343 PQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~ 422 (497)
T COG5265 343 PQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILI 422 (497)
T ss_pred cccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEE
Confidence 22110 00 01222359999999999999999999999
Q ss_pred EcCCCcHHHHH---HHHH---HHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 206 VDEIGTEAEAH---ACRS---IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 206 lDEp~~~~d~~---~i~~---~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+||.|+.+|.. +++. ....|+|-+.+.|.++.+ .-+|.++ ++++|+|++.|+.++++..
T Consensus 423 ~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti-~~adeii--vl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 423 LDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTI-IDADEII--VLDNGRIVERGTHEELLAA 487 (497)
T ss_pred EehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhc-cCCceEE--EeeCCEEEecCcHHHHHHc
Confidence 99999999942 2222 235799999999999866 3489999 9999999999999998764
No 392
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=99.72 E-value=4.6e-16 Score=151.27 Aligned_cols=208 Identities=16% Similarity=0.196 Sum_probs=143.2
Q ss_pred CCCeEEEEEecCCceEEEEeCccCceecCCCCCCHHHHHHHHHHHhccC----CCeeeEecCc---eEEEEEEEe---cC
Q 017797 25 RGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG----GDNRAGIEGT---LHRISAIRS---RK 94 (365)
Q Consensus 25 ~~~~~ei~l~~g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~~----~~~~~~~~g~---~~rv~~~~~---~~ 94 (365)
.+.++||.+.....+++...+.+ ........+++++..+++++..+. ....+.+++. .+|++++.. ..
T Consensus 61 d~~VtdI~vng~~~v~v~~~~~~--~~~~~~f~~~~~~~~l~~~la~~~g~~l~~~~P~~d~~l~~g~Rv~~~~~pvs~~ 138 (340)
T TIGR03819 61 DPGVTDVLVNGPDEVWVDRGEGL--ERTDVRFPDEAAVRRLAQRLAAAAGRRLDDAQPWVDGRLPDGTRLHAVLPPVATD 138 (340)
T ss_pred CCCCEEEEEcCCCEEEEEECCeE--EEcCCCcCCHHHHHHHHHHHHHHcCCcccCCCCeeEeECCCCEEEEEEecCccCC
Confidence 46899999999888888764432 233334568999999988774331 1112333333 279998864 35
Q ss_pred CceeeEEEEECCcccCcchh--------------hhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC
Q 017797 95 GAIVGLTCRVGRAVSGHIDM--------------VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160 (365)
Q Consensus 95 ~~i~~l~~r~~~~~~~~~~~--------------l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~ 160 (365)
|+ .+++|........++. +...+..+..++|+|++||||||+++++++++++. .+++++++.
T Consensus 139 g~--~i~IR~~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~~~--~riv~iEd~ 214 (340)
T TIGR03819 139 GT--CLSLRVPRPRTFTLDELVASGTFPPGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVAPD--ERIVLVEDA 214 (340)
T ss_pred Cc--EEEEEeeCCccCCHHHHHHcCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCCCC--CcEEEECCc
Confidence 66 7999987644322222 23335667899999999999999999999999875 578889999
Q ss_pred CcccCCCCCchhhhhhhhhcc--CCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcE-EEEEEcCcch
Q 017797 161 NEIGGDGDIPHSAIGTARRMQ--VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWL 237 (365)
Q Consensus 161 ~ei~~~~~~~~~~~~~~~~~~--~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~t-Vi~t~H~~~~ 237 (365)
.|+.... + +......+.. ...++....-.+..+|+++||.|+++|.++.+..++ .++.++||. ++.|.|..+.
T Consensus 215 ~El~~~~--~-~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~IivGEiRg~Ea~~~-l~a~~tGh~G~~tTiHA~s~ 290 (340)
T TIGR03819 215 AELRPDH--P-HVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRIVVGEVRGAEVVDL-LAALNTGHDGGAGTLHANSP 290 (340)
T ss_pred ceecCCC--C-CeeeEEeccccccCcCccCHHHHHHHHhccCCCeEEEeCcCcHHHHHH-HHHHHcCCCceEEeeCCCCH
Confidence 8885321 1 1111111111 112345566789999999999999999999865544 667789997 7999999997
Q ss_pred hHHhh
Q 017797 238 ENIIK 242 (365)
Q Consensus 238 ~~~~~ 242 (365)
.+.+.
T Consensus 291 ~~~~~ 295 (340)
T TIGR03819 291 ADVPA 295 (340)
T ss_pred HHHHH
Confidence 66543
No 393
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=99.72 E-value=5e-16 Score=149.42 Aligned_cols=214 Identities=19% Similarity=0.212 Sum_probs=143.7
Q ss_pred HHHhcccCCCCeEEEEEecCCceEEEEeCccCceecCCCCCCHHHHHHHHHHHhccC----CCeeeEecCc----eEEEE
Q 017797 17 DRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG----GDNRAGIEGT----LHRIS 88 (365)
Q Consensus 17 ~~l~~~~~~~~~~ei~l~~g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~~----~~~~~~~~g~----~~rv~ 88 (365)
..|+++.+.+.++||.+.....+.+...|... .. ...++.++++.+++.+..+. ...++.+.++ ..|++
T Consensus 20 ~~l~~~l~D~~V~eI~iN~~~~v~v~~~g~~~--~~-~~~l~~~~~~~~i~~lA~~~~~~~~~~~P~l~~~Lp~~g~Ri~ 96 (323)
T PRK13833 20 DQLCVALDDATVVEIMLNPDGKLFIERLGHGV--AP-AGEMSAAAAEVVIGSVAHALQSEADDERPIISGELPIGGHRFE 96 (323)
T ss_pred HHHHHHhcCCCcEEEEECCCCEEEEEECCceE--Ee-cCcCCHHHHHHHHHHHHHHhCCccCCCCceEEEEeCCCCEEEE
Confidence 33444444578999999988888887766432 22 24689999998887774321 1222223222 26888
Q ss_pred EEEec--CCceeeEEEEECCccc---------Ccc-----hhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc--cCC
Q 017797 89 AIRSR--KGAIVGLTCRVGRAVS---------GHI-----DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--DEF 150 (365)
Q Consensus 89 ~~~~~--~~~i~~l~~r~~~~~~---------~~~-----~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~--~~~ 150 (365)
+.... .|+ .+++|...... +.+ +-+...+..+..++|.|++|||||||+++|++.+. +.
T Consensus 97 ~~~pp~~~~~--~~~IRk~~~~~~tl~~lv~~g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~- 173 (323)
T PRK13833 97 GLLPPVVSGP--AFTIRRRASRLIPLDDYVTSKIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAP- 173 (323)
T ss_pred EEcCCCCCCc--eEEEECcCCCCCCHHHHHHcCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCC-
Confidence 76532 355 89999765333 111 22333456677899999999999999999999884 22
Q ss_pred CCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcE-EE
Q 017797 151 QKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LI 229 (365)
Q Consensus 151 ~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~t-Vi 229 (365)
..++++++++.|+.. ++..... +. .+++....-.+..+|+++||.|+++|.++.+-. .+.++..+||. ++
T Consensus 174 ~~rivtiEd~~El~~----~~~n~v~---l~-~~~~~~~~~lv~~aLR~~PD~IivGEiRg~ea~-~~l~a~~tGh~G~i 244 (323)
T PRK13833 174 EDRLVILEDTAEIQC----AAENAVA---LH-TSDTVDMARLLKSTMRLRPDRIIVGEVRDGAAL-TLLKAWNTGHPGGV 244 (323)
T ss_pred CceEEEecCCccccc----CCCCEEE---ec-cCCCcCHHHHHHHHhCCCCCEEEEeecCCHHHH-HHHHHHcCCCCceE
Confidence 468999999998753 1111100 11 123445667889999999999999999998644 45667789996 89
Q ss_pred EEEcCcchhHHhhhHHH
Q 017797 230 GTAHGEWLENIIKNPIL 246 (365)
Q Consensus 230 ~t~H~~~~~~~~~d~i~ 246 (365)
.|.|+.+..+.+ +++.
T Consensus 245 tTiHA~s~~~a~-~Rl~ 260 (323)
T PRK13833 245 TTIHSNTAMSAL-RRLE 260 (323)
T ss_pred EEECCCCHHHHH-HHHH
Confidence 999999977654 4444
No 394
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=99.71 E-value=3e-16 Score=147.71 Aligned_cols=159 Identities=22% Similarity=0.280 Sum_probs=119.0
Q ss_pred CCCeeeEecCc--eEEEEEEEecCCceeeEEEEECCccc--Ccchh----------hhhcc-cCCcEEEEEcCCCCcHHH
Q 017797 73 GGDNRAGIEGT--LHRISAIRSRKGAIVGLTCRVGRAVS--GHIDM----------VYDLL-HYGKSILFVGRPGVGKTT 137 (365)
Q Consensus 73 ~~~~~~~~~g~--~~rv~~~~~~~~~i~~l~~r~~~~~~--~~~~~----------l~~~l-~~g~~v~iiGpnGsGKTT 137 (365)
++.+++.+.+. ++|++.+...+|. .+++|..+... ..++. +...+ .++++++|.||+||||||
T Consensus 18 ~g~~~~~~~~~~~~~Rv~~~p~~~G~--~~~iR~~~~~~~~~~l~~lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT 95 (264)
T cd01129 18 DGRIRLKLKGREIDLRVSTLPTIYGE--SVVLRILDKKNQILDLEKLGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTT 95 (264)
T ss_pred CceEEEEECCcEEEEEEEEeecCCCC--EEEEEEeCCccCCCCHHHcCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHH
Confidence 34455666665 5899999998888 99999976442 11222 22223 356799999999999999
Q ss_pred HHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHH
Q 017797 138 VMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 217 (365)
Q Consensus 138 llr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~ 217 (365)
++++++..+++. ..++++++++.|+... .+.+..+. ...+..+..++..+|+++||+|+++|+++.+.+.+
T Consensus 96 ~l~all~~i~~~-~~~iitiEdp~E~~~~-~~~q~~v~-------~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~ 166 (264)
T cd01129 96 TLYSALSELNTP-EKNIITVEDPVEYQIP-GINQVQVN-------EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEI 166 (264)
T ss_pred HHHHHHhhhCCC-CCeEEEECCCceecCC-CceEEEeC-------CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHH
Confidence 999998887653 5789999999987532 11111111 12345677789999999999999999999999888
Q ss_pred HHHHHHcCcEEEEEEcCcchhHHhh
Q 017797 218 CRSIAERGVMLIGTAHGEWLENIIK 242 (365)
Q Consensus 218 i~~~~~~G~tVi~t~H~~~~~~~~~ 242 (365)
+.+++.+|+.|+.|.|..+..+.+.
T Consensus 167 ~~~aa~tGh~v~tTlHa~~~~~ai~ 191 (264)
T cd01129 167 AVQAALTGHLVLSTLHTNDAPGAIT 191 (264)
T ss_pred HHHHHHcCCcEEEEeccCCHHHHHH
Confidence 8899999999999999999776543
No 395
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.71 E-value=3.5e-17 Score=162.09 Aligned_cols=166 Identities=14% Similarity=0.167 Sum_probs=117.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------eEEEEcCCC--cccCC-
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSN--EIGGD- 166 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-------~i~~i~~~~--ei~~~- 166 (365)
+.+++++|.... .....++|-+..+.-++++|||||||||||+.+.|.+.|..|. ++....+.. ++...
T Consensus 392 ~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~ 470 (614)
T KOG0927|consen 392 VQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDK 470 (614)
T ss_pred EeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcch
Confidence 446777776553 3478889999999999999999999999999999999998542 111111110 00000
Q ss_pred -------CCCch-h---h----hhh--------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHH--
Q 017797 167 -------GDIPH-S---A----IGT--------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI-- 221 (365)
Q Consensus 167 -------~~~~~-~---~----~~~--------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~-- 221 (365)
..++. . . ++. ...+..+|+|++.|+.+++.+...|.+|+|||||+++|++.+..+
T Consensus 471 s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~lae 550 (614)
T KOG0927|consen 471 SSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAE 550 (614)
T ss_pred hHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHH
Confidence 01111 0 0 110 133556799999999999999999999999999999997544443
Q ss_pred -HHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcE-EEEecCHHHHH
Q 017797 222 -AER-GVMLIGTAHGEWLENIIKNPILSDLIGGVD-TVTLGDEEARA 265 (365)
Q Consensus 222 -~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~-iv~~g~~~~~~ 265 (365)
.+. --+|++++|+..++.+++++++ ...++. ....|+...-.
T Consensus 551 aiNe~~Ggvv~vSHDfrlI~qVaeEi~--~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 551 AINEFPGGVVLVSHDFRLISQVAEEIW--VCENGTVTKWDGDIEIYK 595 (614)
T ss_pred HHhccCCceeeeechhhHHHHHHHHhH--hhccCceeecCccHHHHH
Confidence 333 4689999999999999999999 555555 45557665543
No 396
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=99.71 E-value=1.3e-15 Score=146.70 Aligned_cols=211 Identities=16% Similarity=0.173 Sum_probs=141.7
Q ss_pred HhcccCCCCeEEEEEecCCceEEEEeCccCceecCCCCCCHHHHHHHHHHHhccC----CCeeeEecCc----eEEEEEE
Q 017797 19 LQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG----GDNRAGIEGT----LHRISAI 90 (365)
Q Consensus 19 l~~~~~~~~~~ei~l~~g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~~----~~~~~~~~g~----~~rv~~~ 90 (365)
|+++...+.++||.+.....+.+...|... . ....++.++++.+++.+..+. ....+.+.++ ..|+++.
T Consensus 26 l~~~l~Dp~v~EI~iN~~~~V~v~~~g~~~--~-~~~~~~~~~~~~~~~~lA~~~g~~~~~~~P~l~~~lp~~G~Rv~~~ 102 (319)
T PRK13894 26 LLAALNDPKTVEIMLNADGKLWQERLGEPM--R-CIGTLRVAQAQAIIETIAGYHGKEVTRSKPILEGELPLDGSRFAGQ 102 (319)
T ss_pred HHHHhcCCCceEEEEcCCCEEEEEECCcEE--e-cCCCCCHHHHHHHHHHHHHHcCCcccCCCceEEEEcCCCCEEEEEE
Confidence 344344578999999988788887766532 2 223588999999888775331 1122222221 2577775
Q ss_pred Ee--cCCceeeEEEEECCcccCcch--------------hhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcc---ccCCC
Q 017797 91 RS--RKGAIVGLTCRVGRAVSGHID--------------MVYDLLHYGKSILFVGRPGVGKTTVMREIARVL---SDEFQ 151 (365)
Q Consensus 91 ~~--~~~~i~~l~~r~~~~~~~~~~--------------~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll---~~~~~ 151 (365)
.. ..|+ .+++|..+.....++ -+...+..+..++|+|++|||||||+++|++.+ ++ .
T Consensus 103 ~~p~~~g~--~~~IRk~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~--~ 178 (319)
T PRK13894 103 LPPVVPAP--TFAIRKKAVAIFTLDQYVERGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDP--T 178 (319)
T ss_pred cCCcCCCc--EEEEECCCCCCCCHHHHHhcCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCC--C
Confidence 42 2456 799998654442222 233345678899999999999999999999875 33 4
Q ss_pred CeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcE-EEE
Q 017797 152 KRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LIG 230 (365)
Q Consensus 152 ~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~t-Vi~ 230 (365)
.+++++++..|+... +..... .. .+......-++..+|+++||.|+++|.++.+... +.++.++||. ++.
T Consensus 179 ~rivtIEd~~El~~~----~~~~v~---~~-~~~~~~~~~ll~~aLR~~PD~IivGEiR~~Ea~~-~l~A~~tGh~G~~t 249 (319)
T PRK13894 179 ERVFIIEDTGEIQCA----AENYVQ---YH-TSIDVNMTALLKTTLRMRPDRILVGEVRGPEALD-LLMAWNTGHEGGAA 249 (319)
T ss_pred ceEEEEcCCCccccC----CCCEEE---Ee-cCCCCCHHHHHHHHhcCCCCEEEEeccCCHHHHH-HHHHHHcCCCceEE
Confidence 689999999988531 111100 00 1123345568899999999999999999986544 5677889995 899
Q ss_pred EEcCcchhHHhhhHHH
Q 017797 231 TAHGEWLENIIKNPIL 246 (365)
Q Consensus 231 t~H~~~~~~~~~d~i~ 246 (365)
|.|..+..+.+. ++.
T Consensus 250 TiHa~s~~~ai~-Rl~ 264 (319)
T PRK13894 250 TLHANNAKAGLD-RLK 264 (319)
T ss_pred EECCCCHHHHHH-HHH
Confidence 999999776654 444
No 397
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.70 E-value=7e-17 Score=164.48 Aligned_cols=148 Identities=16% Similarity=0.218 Sum_probs=109.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC-------CCeEEEEcCCCcccCC---
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-------QKRVVIVDTSNEIGGD--- 166 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~-------~~~i~~i~~~~ei~~~--- 166 (365)
++|+++.-+... ..++++++.+++|+.++|.||||||||||+|+|+|+.+-.. +..+.|+++.+-+...
T Consensus 395 ~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLr 473 (604)
T COG4178 395 LENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLR 473 (604)
T ss_pred EeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHH
Confidence 668888876644 35899999999999999999999999999999999997542 2345666665543211
Q ss_pred ---------CCCchhhhhh-----------------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH----
Q 017797 167 ---------GDIPHSAIGT-----------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH---- 216 (365)
Q Consensus 167 ---------~~~~~~~~~~-----------------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~---- 216 (365)
..++...+.. .+.-.++|+|+|||+++||++.++|+++++||-|+.+|.+
T Consensus 474 e~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~ 553 (604)
T COG4178 474 EALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDR 553 (604)
T ss_pred HHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHH
Confidence 0122211110 1334578999999999999999999999999999999863
Q ss_pred HHHHHHH--cCcEEEEEEcCcchhHHhhhHHH
Q 017797 217 ACRSIAE--RGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 217 ~i~~~~~--~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
+...+.+ .++|||.+.|..... .+.++.+
T Consensus 554 l~q~l~~~lp~~tvISV~Hr~tl~-~~h~~~l 584 (604)
T COG4178 554 LYQLLKEELPDATVISVGHRPTLW-NFHSRQL 584 (604)
T ss_pred HHHHHHhhCCCCEEEEeccchhhH-HHHhhhe
Confidence 2333445 589999999998744 4565655
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.69 E-value=2.1e-17 Score=149.41 Aligned_cols=137 Identities=12% Similarity=0.097 Sum_probs=94.6
Q ss_pred chhhhhcccCCc-EEEEEcCCCCcHHHHHHHHH--------hccccCCC-CeEEEEcCCCcccCCCCCchhhhhhhhhcc
Q 017797 112 IDMVYDLLHYGK-SILFVGRPGVGKTTVMREIA--------RVLSDEFQ-KRVVIVDTSNEIGGDGDIPHSAIGTARRMQ 181 (365)
Q Consensus 112 ~~~l~~~l~~g~-~v~iiGpnGsGKTTllr~l~--------gll~~~~~-~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~ 181 (365)
+-.+++.+.+|+ +++|+||||||||||||.|+ |...|... ..+.++++..... ... .. ......
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~l---g~~-~~--l~~~~s 90 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADI---GDE-QS--IEQSLS 90 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEec---Cch-hh--hhcCcc
Confidence 446778888884 79999999999999999998 54444311 1122222211000 000 00 112345
Q ss_pred CCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH--------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCc
Q 017797 182 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH--------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 253 (365)
Q Consensus 182 ~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~--------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g 253 (365)
.+|.||+++..++++ +.+|+++++|||++++|.. .+..+.+.|.++|++||+.+ ...++++++ .+.+|
T Consensus 91 ~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~-l~~~~d~~~--~l~~g 166 (200)
T cd03280 91 TFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGE-LKAYAYKRE--GVENA 166 (200)
T ss_pred hHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHH-HHHHHhcCC--CeEEE
Confidence 568899999888776 4899999999999988853 24445566899999999854 557899988 88889
Q ss_pred EEEEe
Q 017797 254 DTVTL 258 (365)
Q Consensus 254 ~iv~~ 258 (365)
++++.
T Consensus 167 ~l~~~ 171 (200)
T cd03280 167 SMEFD 171 (200)
T ss_pred EEEEe
Confidence 98766
No 399
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.68 E-value=3.8e-17 Score=151.69 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=52.2
Q ss_pred hccCCCcchhHHHHHHHHHhh----CCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 179 RMQVPEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 179 ~~~~~S~g~~~r~~la~al~~----~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
....+|+||+||++++++++. +|+++++|||++++|+. .+.++.+ +.++|+++|..+ ...+||+++
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~-~~~~~d~i~ 231 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPE-LLEVADKFY 231 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHhhCCEEE
Confidence 345579999999999999963 58999999999999963 3444433 788998899865 557888877
No 400
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.68 E-value=4.1e-16 Score=140.81 Aligned_cols=118 Identities=18% Similarity=0.280 Sum_probs=91.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCC
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 202 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~ 202 (365)
++++|+||+||||||++++|++.+++..++++.+++++.|+..... .....+.++........-+++.+++++|+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~-----~~~i~q~~vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESK-----RSLINQREVGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCc-----cceeeecccCCCccCHHHHHHHHhcCCcC
Confidence 5799999999999999999999998665678999998877642111 00111222223334456689999999999
Q ss_pred EEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 203 VIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 203 vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
+|++|||++.+.+..+.+++.+|+.+++|+|+.+..+ ..++++
T Consensus 77 ~ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~~~~-~~~Rl~ 119 (198)
T cd01131 77 VILVGEMRDLETIRLALTAAETGHLVMSTLHTNSAAK-TIDRII 119 (198)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCEEEEEecCCcHHH-HHhHHH
Confidence 9999999999888888888899999999999999765 467776
No 401
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.68 E-value=1.1e-16 Score=155.89 Aligned_cols=130 Identities=18% Similarity=0.233 Sum_probs=98.5
Q ss_pred hcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----CeEEEEcCCCcccCCCCCc----------------hhhhh-
Q 017797 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----KRVVIVDTSNEIGGDGDIP----------------HSAIG- 175 (365)
Q Consensus 117 ~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----~~i~~i~~~~ei~~~~~~~----------------~~~~~- 175 (365)
..+..|++++++||||-||||+.++|+|.+.|+.+ -+|.|-+|...-.+.+.+. +..+.
T Consensus 362 G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~ 441 (591)
T COG1245 362 GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVK 441 (591)
T ss_pred CeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcC
Confidence 34566789999999999999999999999999865 3555555432211111110 00100
Q ss_pred -------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHH
Q 017797 176 -------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENI 240 (365)
Q Consensus 176 -------~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~ 240 (365)
.-+++..+|||+.||+++|++|..+.|+.++|||.+.+|. .+++...+ ++.|.+++-|+.-..+.
T Consensus 442 pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dy 521 (591)
T COG1245 442 PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDY 521 (591)
T ss_pred ccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhh
Confidence 1156778899999999999999999999999999999995 45666654 57999999999998888
Q ss_pred hhhHHH
Q 017797 241 IKNPIL 246 (365)
Q Consensus 241 ~~d~i~ 246 (365)
++|+++
T Consensus 522 vsDr~i 527 (591)
T COG1245 522 VSDRLI 527 (591)
T ss_pred hhceEE
Confidence 887776
No 402
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=5.3e-16 Score=166.96 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=70.5
Q ss_pred cCCCcchhHHHHHHHHHhh---CCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHH
Q 017797 181 QVPEPSLQHKVMIEAVENH---MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI 250 (365)
Q Consensus 181 ~~~S~g~~~r~~la~al~~---~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll 250 (365)
..+|+||+||+.++++|.. +|+++|+|||++++|+ +.+..+.+.|.|||+++|+.+++. .||+++ .+
T Consensus 827 ~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~ii--~L 903 (924)
T TIGR00630 827 TTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADYII--DL 903 (924)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEE--Ee
Confidence 4469999999999999997 5999999999999985 456666778999999999999885 699999 88
Q ss_pred ------cCcEEEEecCHHHH
Q 017797 251 ------GGVDTVTLGDEEAR 264 (365)
Q Consensus 251 ------~~g~iv~~g~~~~~ 264 (365)
++|++++.|+++++
T Consensus 904 gp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 904 GPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred cCCccCCCCEEEEeCCHHHh
Confidence 68999999998764
No 403
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.64 E-value=3.6e-16 Score=141.81 Aligned_cols=126 Identities=15% Similarity=0.098 Sum_probs=82.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHH----hccccCCCC---------------eEEEEcCCC---cccCC------C---
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIA----RVLSDEFQK---------------RVVIVDTSN---EIGGD------G--- 167 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~----gll~~~~~~---------------~i~~i~~~~---ei~~~------~--- 167 (365)
+.+| +++|+||||||||||+++|. |...++.+. .|.+..+.. .+... .
T Consensus 20 ~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~ 98 (204)
T cd03240 20 FFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVI 98 (204)
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhcee
Confidence 4455 99999999999999999995 777654321 222222211 00000 0
Q ss_pred CCchhhhhh--hhhccCCCcchhHH------HHHHHHHhhCCCEEEEcCCCcHHHHHHHH--------HHHHc-CcEEEE
Q 017797 168 DIPHSAIGT--ARRMQVPEPSLQHK------VMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAER-GVMLIG 230 (365)
Q Consensus 168 ~~~~~~~~~--~~~~~~~S~g~~~r------~~la~al~~~P~vlilDEp~~~~d~~~i~--------~~~~~-G~tVi~ 230 (365)
..++..... .+....+|+|++++ +++++++..+|+++++|||++++|..... ++.+. |.+||+
T Consensus 99 ~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iii 178 (204)
T cd03240 99 FCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIV 178 (204)
T ss_pred eechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEE
Confidence 001111100 12456789999996 67889999999999999999999863322 23344 789999
Q ss_pred EEcCcchhHHhhhHHH
Q 017797 231 TAHGEWLENIIKNPIL 246 (365)
Q Consensus 231 t~H~~~~~~~~~d~i~ 246 (365)
++|+.+... .||+++
T Consensus 179 itH~~~~~~-~~d~i~ 193 (204)
T cd03240 179 ITHDEELVD-AADHIY 193 (204)
T ss_pred EEecHHHHh-hCCEEE
Confidence 999988664 577776
No 404
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.64 E-value=2.8e-16 Score=143.39 Aligned_cols=65 Identities=8% Similarity=0.022 Sum_probs=51.0
Q ss_pred ccCCCcchhHHHHHHHHHhh----CCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 180 MQVPEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 180 ~~~~S~g~~~r~~la~al~~----~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
...+|+|++|+++++++++. .|+++++|||++++|+. .+.++. ++.++|+++|+.+ ...+||+++
T Consensus 125 ~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~~-~~~~~d~v~ 200 (212)
T cd03274 125 ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRNN-MFELADRLV 200 (212)
T ss_pred hhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcHH-HHHhCCEEE
Confidence 45679999999999999964 47999999999999953 344443 4678888889864 556888877
No 405
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.64 E-value=1.1e-15 Score=164.95 Aligned_cols=85 Identities=16% Similarity=0.178 Sum_probs=74.2
Q ss_pred ccCCCcchhHHHHHHHHHhhCC---CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHH
Q 017797 180 MQVPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (365)
Q Consensus 180 ~~~~S~g~~~r~~la~al~~~P---~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~l 249 (365)
...+|+|++||+.++++|..+| +++|+|||++++|. +.+..+.+.|.|||+++|+.+.+. .||+++ .
T Consensus 828 ~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ii--~ 904 (943)
T PRK00349 828 ATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWII--D 904 (943)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEE--E
Confidence 3456999999999999999999 99999999999885 345666678999999999999885 699999 8
Q ss_pred H------cCcEEEEecCHHHHHHh
Q 017797 250 I------GGVDTVTLGDEEARARR 267 (365)
Q Consensus 250 l------~~g~iv~~g~~~~~~~~ 267 (365)
+ ++|++++.|+++++...
T Consensus 905 Lgp~~G~~~G~Iv~~Gt~~el~~~ 928 (943)
T PRK00349 905 LGPEGGDGGGEIVATGTPEEVAKV 928 (943)
T ss_pred ecCCcCCCCCEEEEeCCHHHHHhC
Confidence 8 58999999999998764
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.63 E-value=1.2e-15 Score=171.35 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=73.1
Q ss_pred cCCCcchhHHHHHHHHHh---hCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHH
Q 017797 181 QVPEPSLQHKVMIEAVEN---HMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI 250 (365)
Q Consensus 181 ~~~S~g~~~r~~la~al~---~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll 250 (365)
..+|+||+||+.+|++|. ++|+++|+||||+++|. +.+..+.+.|.|||+++|+++++ ..+|+++ .|
T Consensus 808 ~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi--~L 884 (1809)
T PRK00635 808 SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVL--EL 884 (1809)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEE--EE
Confidence 446999999999999997 69999999999999985 45566677899999999999988 7899999 88
Q ss_pred c------CcEEEEecCHHHHHH
Q 017797 251 G------GVDTVTLGDEEARAR 266 (365)
Q Consensus 251 ~------~g~iv~~g~~~~~~~ 266 (365)
+ +|++++.|+++++..
T Consensus 885 ~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 885 GPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred ccCCCCCCCEEEEeCCHHHHHh
Confidence 5 789999999999875
No 407
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.63 E-value=1.6e-15 Score=145.48 Aligned_cols=155 Identities=12% Similarity=0.177 Sum_probs=111.2
Q ss_pred eEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC------ccc--------
Q 017797 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN------EIG-------- 164 (365)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~------ei~-------- 164 (365)
++.+.|.... -.+..++..+++|+++-|+|.|||||||++..+.|+..|+.| .|..-+.+. ++.
T Consensus 327 nvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG-~I~ldg~pV~~e~ledYR~LfSavFs 404 (546)
T COG4615 327 NVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSG-EILLDGKPVSAEQLEDYRKLFSAVFS 404 (546)
T ss_pred eeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCC-ceeECCccCCCCCHHHHHHHHHHHhh
Confidence 4444444332 236778899999999999999999999999999999999854 444332221 110
Q ss_pred ----C------CC-CCchhhhhhhhh---------------ccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH---
Q 017797 165 ----G------DG-DIPHSAIGTARR---------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA--- 215 (365)
Q Consensus 165 ----~------~~-~~~~~~~~~~~~---------------~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~--- 215 (365)
+ .+ .-|+..-.+..+ .--+|.|||+|+++-.|++.+-|++++||-....|+
T Consensus 405 DyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFR 484 (546)
T COG4615 405 DYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFR 484 (546)
T ss_pred hHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHH
Confidence 0 00 111111111111 112599999999999999999999999999887775
Q ss_pred -----HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEe
Q 017797 216 -----HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (365)
Q Consensus 216 -----~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~ 258 (365)
..+-.++++|+|||.+|||..-. ..+|+.+ .+..|+++..
T Consensus 485 R~FY~~lLp~LK~qGKTI~aIsHDd~YF-~~ADrll--~~~~G~~~e~ 529 (546)
T COG4615 485 REFYQVLLPLLKEQGKTIFAISHDDHYF-IHADRLL--EMRNGQLSEL 529 (546)
T ss_pred HHHHHHHhHHHHHhCCeEEEEecCchhh-hhHHHHH--HHhcCceeec
Confidence 23445678999999999998744 4799999 8999999866
No 408
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.62 E-value=1.8e-15 Score=151.13 Aligned_cols=149 Identities=19% Similarity=0.247 Sum_probs=107.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC--------C--CeEEEEcCCCcccCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--------Q--KRVVIVDTSNEIGGD 166 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~--------~--~~i~~i~~~~ei~~~ 166 (365)
++++++.-+....-.++++++.++.|+.++|+||||||||.|+|.|+|+++... + +.+.|+++++-+...
T Consensus 436 ~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~G 515 (659)
T KOG0060|consen 436 FEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLG 515 (659)
T ss_pred eeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCcccc
Confidence 445555544422234788999999999999999999999999999999998442 2 347778776543210
Q ss_pred -----CCCc------------hhhh----------------h------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 167 -----GDIP------------HSAI----------------G------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 167 -----~~~~------------~~~~----------------~------~~~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
-.+| ...+ + .....+++|+|++||+++||.+.++|++-|||
T Consensus 516 TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLD 595 (659)
T KOG0060|consen 516 TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILD 595 (659)
T ss_pred chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEee
Confidence 0011 0000 0 01456788999999999999999999999999
Q ss_pred CCCcHHHH--H--HHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 208 EIGTEAEA--H--ACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 208 Ep~~~~d~--~--~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
|-|+..+. + .-+..++.|+|.|.++|..+.. ..-|-++
T Consensus 596 E~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~-kfHd~~L 637 (659)
T KOG0060|consen 596 ECTSAVTEDVEGALYRKCREMGITFISVGHRKSLW-KFHDYVL 637 (659)
T ss_pred chhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHH-hhhhEEE
Confidence 99997653 3 3455678899999999999855 4555555
No 409
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.60 E-value=1.1e-15 Score=164.86 Aligned_cols=152 Identities=17% Similarity=0.225 Sum_probs=109.6
Q ss_pred CcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC-----------------CCCeEEEEcCCCcccCC------
Q 017797 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-----------------FQKRVVIVDTSNEIGGD------ 166 (365)
Q Consensus 110 ~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~-----------------~~~~i~~i~~~~ei~~~------ 166 (365)
..+++++..+.||.+++|+|++||||||||+.|+|-..-. ..+.++|+.+..--...
T Consensus 805 qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrES 884 (1391)
T KOG0065|consen 805 QLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRES 884 (1391)
T ss_pred EhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHH
Confidence 3499999999999999999999999999999999975321 12445555543211000
Q ss_pred ----------CCCchhhh----h----h--h-----hhccC----CCcchhHHHHHHHHHhhCC-CEEEEcCCCcHHHH-
Q 017797 167 ----------GDIPHSAI----G----T--A-----RRMQV----PEPSLQHKVMIEAVENHMP-EVIIVDEIGTEAEA- 215 (365)
Q Consensus 167 ----------~~~~~~~~----~----~--~-----~~~~~----~S~g~~~r~~la~al~~~P-~vlilDEp~~~~d~- 215 (365)
..++...- . . . .-++. +|..|++|+.|+-=|+.+| -+|+|||||+|+|.
T Consensus 885 L~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsq 964 (1391)
T KOG0065|consen 885 LRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQ 964 (1391)
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHH
Confidence 00110000 0 0 0 11222 6889999999999999999 89999999999994
Q ss_pred ------HHHHHHHHcCcEEEEEEcCcch-hHHhhhHHHHHHH-cCcEEEEecCHHH
Q 017797 216 ------HACRSIAERGVMLIGTAHGEWL-ENIIKNPILSDLI-GGVDTVTLGDEEA 263 (365)
Q Consensus 216 ------~~i~~~~~~G~tVi~t~H~~~~-~~~~~d~i~~~ll-~~g~iv~~g~~~~ 263 (365)
+.++.++++|.||+.|.|..+. .-..-|+++ || .+|+.|..|+..+
T Consensus 965 aA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LL--LLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 965 AAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELL--LLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHH--HHhcCCeEEEecCccc
Confidence 5678889999999999999872 223467777 55 5789999998875
No 410
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.60 E-value=2.1e-15 Score=136.12 Aligned_cols=122 Identities=9% Similarity=0.067 Sum_probs=78.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCC-----C-------------CeEEEEcCCCcccCC--CCCchhhhh--------
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSDEF-----Q-------------KRVVIVDTSNEIGGD--GDIPHSAIG-------- 175 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~~~-----~-------------~~i~~i~~~~ei~~~--~~~~~~~~~-------- 175 (365)
+.+|+|||||||||++.+|.-.+.... + ..|....+...+... ....+..+.
T Consensus 23 l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (198)
T cd03276 23 VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFLTSNKA 102 (198)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHhccccc
Confidence 779999999999999999985443220 0 111111111111000 001111110
Q ss_pred hhhhccCCCcchhHHHHHHHHH----hhCCCEEEEcCCCcHHHH-------HHHHHHHHc---CcEEEEEEcCcchhHHh
Q 017797 176 TARRMQVPEPSLQHKVMIEAVE----NHMPEVIIVDEIGTEAEA-------HACRSIAER---GVMLIGTAHGEWLENII 241 (365)
Q Consensus 176 ~~~~~~~~S~g~~~r~~la~al----~~~P~vlilDEp~~~~d~-------~~i~~~~~~---G~tVi~t~H~~~~~~~~ 241 (365)
..+....+|+|+++++++++++ +++|+++++|||++++|. +.+.++... +.+|++++|+++.+..+
T Consensus 103 ~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~ 182 (198)
T cd03276 103 AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS 182 (198)
T ss_pred cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc
Confidence 1134566899999999999999 589999999999999995 334444332 36899999999988654
Q ss_pred hhHHH
Q 017797 242 KNPIL 246 (365)
Q Consensus 242 ~d~i~ 246 (365)
|++.
T Consensus 183 -d~v~ 186 (198)
T cd03276 183 -DDVK 186 (198)
T ss_pred -ccee
Confidence 6555
No 411
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.59 E-value=1e-14 Score=130.34 Aligned_cols=127 Identities=18% Similarity=0.277 Sum_probs=93.4
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhh-hhhhhhc--cCCCcchh
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSA-IGTARRM--QVPEPSLQ 188 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~-~~~~~~~--~~~S~g~~ 188 (365)
.+-+.+.++.|++++|+||||||||||+++|+++++++ .++++++++.|+.. ++.. +....+. ...+....
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~--~~~i~ied~~E~~~----~~~~~~~~~~~~~~~~~~~~~~ 88 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD--ERIITIEDTAELQL----PHPNWVRLVTRPGNVEGSGEVT 88 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEECCccccCC----CCCCEEEEEEecCCCCCCCccC
Confidence 56677888999999999999999999999999999875 46777787777643 1111 1100011 11233445
Q ss_pred HHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcE-EEEEEcCcchhHHhhhHHH
Q 017797 189 HKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 189 ~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~t-Vi~t~H~~~~~~~~~d~i~ 246 (365)
..-.+..+++++||+++++|.++.+... +.+++.+|+. ++.|.|..+..+.+ +++.
T Consensus 89 ~~~~l~~~lR~~pd~i~igEir~~ea~~-~~~a~~tGh~g~~~T~Ha~s~~~~~-~Rl~ 145 (186)
T cd01130 89 MADLLRSALRMRPDRIIVGEVRGGEALD-LLQAMNTGHPGGMTTIHANSAEEAL-TRLE 145 (186)
T ss_pred HHHHHHHHhccCCCEEEEEccCcHHHHH-HHHHHhcCCCCceeeecCCCHHHHH-HHHH
Confidence 6667888999999999999999987555 4456789998 99999999977654 4444
No 412
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.59 E-value=4.3e-15 Score=148.78 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=112.7
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------CeEEEEcCCCcccC---CCC-
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIVDTSNEIGG---DGD- 168 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------------~~i~~i~~~~ei~~---~~~- 168 (365)
+.+++|.+.+||+++|.|--|||+|-++++|.|..++..+ ..+.|+++...-.+ ...
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI 354 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSI 354 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcH
Confidence 7789999999999999999999999999999997765421 12444433221100 000
Q ss_pred -----------------Cchhhhh----------------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH
Q 017797 169 -----------------IPHSAIG----------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (365)
Q Consensus 169 -----------------~~~~~~~----------------~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~ 215 (365)
+....-. ....+..+|||.||++.+++.|..+|++||+||||.+.|+
T Consensus 355 ~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDV 434 (500)
T COG1129 355 AENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDV 434 (500)
T ss_pred HHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCccc
Confidence 0000000 0033456799999999999999999999999999999884
Q ss_pred -------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEe
Q 017797 216 -------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (365)
Q Consensus 216 -------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~ 258 (365)
.++++++++|++||++|-++.++-.+|||++ +|++|+++..
T Consensus 435 GAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIl--Vm~~Gri~~e 482 (500)
T COG1129 435 GAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRIL--VMREGRIVGE 482 (500)
T ss_pred chHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEE--EEECCEEEEE
Confidence 6788899999999999999999999999999 9999999875
No 413
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=4.3e-15 Score=144.06 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=101.2
Q ss_pred eeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCc--ccC---
Q 017797 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNE--IGG--- 165 (365)
Q Consensus 98 ~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------~~i~~i~~~~e--i~~--- 165 (365)
.++++.|....+ .+..++|-+.-...++|+||||.||||||+.|.|-+.|+.+ -+|+++++... +..
T Consensus 590 H~VtFgy~gqkp-LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eet 668 (807)
T KOG0066|consen 590 HDVTFGYPGQKP-LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEET 668 (807)
T ss_pred ccccccCCCCCc-hhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccC
Confidence 367777754443 36777787777788999999999999999999999988743 35676665321 000
Q ss_pred -------CCCCchhhhhh------------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHH----
Q 017797 166 -------DGDIPHSAIGT------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA---- 222 (365)
Q Consensus 166 -------~~~~~~~~~~~------------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~---- 222 (365)
...+|+..... .-++.-+|+|++.|++++-.-+..||||||||||+.+|++.|..++
T Consensus 669 p~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIn 748 (807)
T KOG0066|consen 669 PVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAIN 748 (807)
T ss_pred HHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHH
Confidence 01233322110 0234457999999999999999999999999999999987655543
Q ss_pred HcCcEEEEEEcCcchhH
Q 017797 223 ERGVMLIGTAHGEWLEN 239 (365)
Q Consensus 223 ~~G~tVi~t~H~~~~~~ 239 (365)
+-.-.||+++|+..++-
T Consensus 749 ey~GgVi~VsHDeRLi~ 765 (807)
T KOG0066|consen 749 EYNGGVIMVSHDERLIV 765 (807)
T ss_pred hccCcEEEEecccceee
Confidence 34568999999987553
No 414
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.58 E-value=4.8e-15 Score=146.52 Aligned_cols=141 Identities=13% Similarity=0.213 Sum_probs=105.5
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC-------CCCeEEEEcCCCcccCC-----------------
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-------FQKRVVIVDTSNEIGGD----------------- 166 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~-------~~~~i~~i~~~~ei~~~----------------- 166 (365)
.+..+++.+++|-.++|+||||||||+|.|+|.|+++-. ...++.|+++++-....
T Consensus 497 vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~ 576 (728)
T KOG0064|consen 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKR 576 (728)
T ss_pred eecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHh
Confidence 367888999999999999999999999999999999732 13467788876643310
Q ss_pred CCCchhhhhh--------------------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHH--HH--HHHHHHH
Q 017797 167 GDIPHSAIGT--------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA--EA--HACRSIA 222 (365)
Q Consensus 167 ~~~~~~~~~~--------------------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~--d~--~~i~~~~ 222 (365)
.+++.+++.. ....+++|+|+|||+++||.+-|+|++-++||-|+.. |+ ..+..+.
T Consensus 577 kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak 656 (728)
T KOG0064|consen 577 KGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK 656 (728)
T ss_pred cCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHH
Confidence 1222221110 1345678999999999999999999999999999964 33 3566667
Q ss_pred HcCcEEEEEEcCcchhHHhhhHHHHHHHcCc
Q 017797 223 ERGVMLIGTAHGEWLENIIKNPILSDLIGGV 253 (365)
Q Consensus 223 ~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g 253 (365)
+.|.+.+.++|..+.. .+....+. +.+.|
T Consensus 657 ~~gi~llsithrpslw-k~h~~ll~-~dg~g 685 (728)
T KOG0064|consen 657 DAGISLLSITHRPSLW-KYHTHLLE-FDGEG 685 (728)
T ss_pred hcCceEEEeecCccHH-HHHHHHHh-ccCCC
Confidence 7899999999999865 46666664 55444
No 415
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.57 E-value=1.5e-13 Score=132.24 Aligned_cols=216 Identities=17% Similarity=0.203 Sum_probs=146.8
Q ss_pred hcccCCCCeEEEEEecCCceEEEEeCccCceecCCCCCCHHHHHHHHHHHhcc----CCCeeeEecCc---eEEEEEEEe
Q 017797 20 QNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEF----GGDNRAGIEGT---LHRISAIRS 92 (365)
Q Consensus 20 ~~~~~~~~~~ei~l~~g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~----~~~~~~~~~g~---~~rv~~~~~ 92 (365)
.++.....++||.+..-.|+.+...+.. ........++.+++..++.++..+ -....+-+..+ .+|++....
T Consensus 19 ~p~l~D~~iedI~~n~~~~v~v~~~~~~-~~~~~~~~~~~~~l~~~~~~~a~~~gk~is~~~Pi~~~~lp~g~Ri~i~~~ 97 (312)
T COG0630 19 EPLLRDPRIEDIVVNGPGPVYVEHKGGG-SYVTNIPFLTEEELDSLAIRLAQRSGKPISEANPILDATLPDGSRIQIVLG 97 (312)
T ss_pred chhhcCCCceEEEecCCceEEEEEcCCc-ceeccCccCCHHHHHHHHHHHHHHcCCCCCCCCCceEeEcCCCcEEEEEeC
Confidence 3444457799999996667766554422 112234567889998887766433 22222222222 478888773
Q ss_pred ----cCCceeeEEEEECCccc--------------CcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeE
Q 017797 93 ----RKGAIVGLTCRVGRAVS--------------GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV 154 (365)
Q Consensus 93 ----~~~~i~~l~~r~~~~~~--------------~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i 154 (365)
.+|. ++++|.....+ .....++..++.++.+.|+|++||||||+|++++.++++. .++
T Consensus 98 ~~v~~~~~--s~~IRk~~~~~~t~~~l~~~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~--~ri 173 (312)
T COG0630 98 PEVSPNGS--SFTIRKFSDEPITPEDLIEYGTISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPE--ERI 173 (312)
T ss_pred CCcCCCCC--cEEEEcCCCCCCCHHHHhhcCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCch--hcE
Confidence 3344 68888766544 1234456778899999999999999999999999999985 689
Q ss_pred EEEcCCCcccCCCCCchhh-hhhh-hhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEE
Q 017797 155 VIVDTSNEIGGDGDIPHSA-IGTA-RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTA 232 (365)
Q Consensus 155 ~~i~~~~ei~~~~~~~~~~-~~~~-~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~ 232 (365)
+++++..|+.. ++.. .... +.....+........+.+||+++||+||++|.++.+ ...+.++..+||..+.|.
T Consensus 174 vtIEdt~E~~~----~~~n~~~l~~r~~~~~~~~v~~~dll~aalR~rPd~IivgEvrg~e-~~~~~~a~~tGh~~isT~ 248 (312)
T COG0630 174 VTIEDTPELKL----PHENWVQLVTREGESGSSEVSLEDLLRAALRQRPDYIIVGELRGRE-AFVLFQAMQTGHGTISTI 248 (312)
T ss_pred EEEeccccccC----CCCCEEEEEecCCCCCccccCHHHHHHHHHhcCCCeEEEeeeecHH-HHHHHHHHhcCCCceeEE
Confidence 99999888743 3222 1111 111111344567788999999999999999999985 455666678899999999
Q ss_pred cCcchhHHhhhHHH
Q 017797 233 HGEWLENIIKNPIL 246 (365)
Q Consensus 233 H~~~~~~~~~d~i~ 246 (365)
|..+... .-+++.
T Consensus 249 ha~s~~~-~~~rl~ 261 (312)
T COG0630 249 HADSPEL-VLDRLT 261 (312)
T ss_pred ecCCHHH-HHHHHh
Confidence 9998543 344444
No 416
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.57 E-value=5.8e-15 Score=138.01 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=51.5
Q ss_pred ccCCCcchhHHHHHHHHHh----hCCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 180 MQVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 180 ~~~~S~g~~~r~~la~al~----~~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
...+|+|++|+++++++++ .+|+++++|||++++|.. .+..+ ..|.++|++||..+.. ..||+++
T Consensus 164 ~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~-~~g~~ii~iSH~~~~~-~~~d~v~ 239 (251)
T cd03273 164 LTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTH-FKGSQFIVVSLKEGMF-NNANVLF 239 (251)
T ss_pred ccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-cCCCEEEEEECCHHHH-HhCCEEE
Confidence 4457999999999999997 478999999999999853 23333 2589999999996544 4688876
No 417
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=9.5e-15 Score=144.27 Aligned_cols=161 Identities=12% Similarity=0.072 Sum_probs=114.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCC----------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------- 166 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~---------- 166 (365)
+..+++.|....+.....++...+.-.-+.++|+||+||||+++++.+.+.|.. .+..+..+..+.+.
T Consensus 365 i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~r--gi~~~~~r~ri~~f~Qhhvd~l~~ 442 (582)
T KOG0062|consen 365 ISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTR--GIVGRHPRLRIKYFAQHHVDFLDK 442 (582)
T ss_pred EEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccc--ceeeecccceecchhHhhhhHHHH
Confidence 345566665554222555666666667899999999999999999999888752 23333322222210
Q ss_pred ------------CCCchhhhhh------------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHH-
Q 017797 167 ------------GDIPHSAIGT------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI- 221 (365)
Q Consensus 167 ------------~~~~~~~~~~------------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~- 221 (365)
.+.++..+.. ...+..+|||||-|+++|++...+|.+|+|||||+.+|.+.+-.+
T Consensus 443 ~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~ 522 (582)
T KOG0062|consen 443 NVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALA 522 (582)
T ss_pred HhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHH
Confidence 1112211110 123566899999999999999999999999999999997655444
Q ss_pred ---HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEe-cCH
Q 017797 222 ---AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDE 261 (365)
Q Consensus 222 ---~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~-g~~ 261 (365)
.+-+-.||++||+.++++.+|+.++ +.++|++..+ |..
T Consensus 523 ~Al~~F~GGVv~VSHd~~fi~~~c~E~W--vve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 523 KALKNFNGGVVLVSHDEEFISSLCKELW--VVEDGKVTPIEGGI 564 (582)
T ss_pred HHHHhcCCcEEEEECcHHHHhhcCceeE--EEcCCcEEeeeccH
Confidence 3336689999999999999999999 9999998754 444
No 418
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.56 E-value=2.4e-15 Score=140.34 Aligned_cols=65 Identities=9% Similarity=0.037 Sum_probs=54.4
Q ss_pred cCCCcchhHHHHHHHHHhhC----CCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 181 QVPEPSLQHKVMIEAVENHM----PEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 181 ~~~S~g~~~r~~la~al~~~----P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
..+|+|++++++++++++.+ |+++++|||++++|. +.+.++++.|.+||++||+.+.. ..||+++
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i~ 229 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADALV 229 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeEE
Confidence 55799999999999999875 899999999999985 34555555689999999997765 5688877
No 419
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.56 E-value=4.9e-15 Score=134.06 Aligned_cols=139 Identities=15% Similarity=0.112 Sum_probs=82.9
Q ss_pred hhcccCCcEEEEEcCCCCcHHHHHHHHHhccc-cCCCCeEEEEc-CCCcccCCC-CCchhhh--hhhhhccCCCcchhHH
Q 017797 116 YDLLHYGKSILFVGRPGVGKTTVMREIARVLS-DEFQKRVVIVD-TSNEIGGDG-DIPHSAI--GTARRMQVPEPSLQHK 190 (365)
Q Consensus 116 ~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~-~~~~~~i~~i~-~~~ei~~~~-~~~~~~~--~~~~~~~~~S~g~~~r 190 (365)
+..+..|+.++|+|||||||||+|++|++..- ...+. +++ ....+.... .+.+... .........+.+++ +
T Consensus 23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~---~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~-~ 98 (202)
T cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGC---FVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELL-E 98 (202)
T ss_pred eEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCC---CccccccccCCcCEEEEEecCcccccCCceeHHHHHH-H
Confidence 34466789999999999999999999994331 11111 111 111111100 0000000 00011122234444 4
Q ss_pred HHHHHHHhhCCCEEEEcCCCcHHHHH--------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCH
Q 017797 191 VMIEAVENHMPEVIIVDEIGTEAEAH--------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 261 (365)
Q Consensus 191 ~~la~al~~~P~vlilDEp~~~~d~~--------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~ 261 (365)
+..+.++..+|+++++|||++++|+. .+..+.+.|.++|++||+.+... .++++. .+..+++...++.
T Consensus 99 l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~-~~~~~~--~l~~~~~~~~~~~ 174 (202)
T cd03243 99 LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELAD-LPEQVP--GVKNLHMEELITT 174 (202)
T ss_pred HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHH-HhhcCC--CeEEEEEEEEecC
Confidence 56667777899999999999987742 23344566899999999987665 555555 6666777766544
No 420
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.55 E-value=1e-14 Score=127.40 Aligned_cols=121 Identities=15% Similarity=0.141 Sum_probs=79.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhh-
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH- 199 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~- 199 (365)
++.++.|+|||||||||+++++.-..-...+ ++.. ......+ ..++............+|+|++++..+++++..
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~-~~~~-~~~~~~g--~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~ 95 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQS-ATRR-RSGVKAG--CIVAAVSAELIFTRLQLSGGEKELSALALILALA 95 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcch-hhhc-cCcccCC--CcceeeEEEEehheeeccccHHHHHHHHHHHHhc
Confidence 4469999999999999999998776654321 1111 0000000 001111100001122379999999999999987
Q ss_pred ---CCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 200 ---MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 200 ---~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
+|+++++|||++++|. +++.++..+|.++|++||+.+... .+|+++
T Consensus 96 ~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~ 151 (162)
T cd03227 96 SLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE-LADKLI 151 (162)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hhhhEE
Confidence 7899999999998885 234444444889999999998765 466655
No 421
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.54 E-value=2e-14 Score=140.29 Aligned_cols=141 Identities=20% Similarity=0.245 Sum_probs=100.6
Q ss_pred eEEEEECCcccCcchhhhh-cccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcc-------cC-----
Q 017797 99 GLTCRVGRAVSGHIDMVYD-LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI-------GG----- 165 (365)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~-~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei-------~~----- 165 (365)
..+.||+.... .-... ...+|++++|+||||-||||.+++|+|.+.|+.+.. +.++.. .+
T Consensus 79 e~vHRYg~NgF---kL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~----~~pp~wdeVi~~FrGtELq~ 151 (591)
T COG1245 79 EVVHRYGVNGF---KLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY----EDPPSWDEVIKRFRGTELQN 151 (591)
T ss_pred cceeeccCCce---EEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC----CCCCCHHHHHHHhhhhHHHH
Confidence 45667765332 11112 245799999999999999999999999999985431 111100 00
Q ss_pred ------C------------CCCchhh---h----------h--------------hhhhccCCCcchhHHHHHHHHHhhC
Q 017797 166 ------D------------GDIPHSA---I----------G--------------TARRMQVPEPSLQHKVMIEAVENHM 200 (365)
Q Consensus 166 ------~------------~~~~~~~---~----------~--------------~~~~~~~~S~g~~~r~~la~al~~~ 200 (365)
. ..+|... + + .-+.+..+|||+-||+++|+++..+
T Consensus 152 YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rd 231 (591)
T COG1245 152 YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRD 231 (591)
T ss_pred HHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhcc
Confidence 0 0000000 0 0 0144566899999999999999999
Q ss_pred CCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 201 PEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 201 P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
.|+.++|||++-+|+ .+++++++.+.+||.+.|++...+.++|-+.
T Consensus 232 ADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vh 284 (591)
T COG1245 232 ADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVH 284 (591)
T ss_pred CCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeE
Confidence 999999999999995 5688888889999999999998888777665
No 422
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.54 E-value=3.9e-14 Score=130.11 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=93.8
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc-CCCCeEEEEcCCC-cccCCCC-CchhhhhhhhhccCCCcchh
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-EFQKRVVIVDTSN-EIGGDGD-IPHSAIGTARRMQVPEPSLQ 188 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~-~~~~~i~~i~~~~-ei~~~~~-~~~~~~~~~~~~~~~S~g~~ 188 (365)
++++++...++++++|+||||+||||+++.++-..-- ..+ .+++... .+..... +...... -.....+|.+++
T Consensus 20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g---~~vpa~~~~~~~~~~il~~~~l~-d~~~~~lS~~~~ 95 (222)
T cd03285 20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIG---CFVPCDSADIPIVDCILARVGAS-DSQLKGVSTFMA 95 (222)
T ss_pred EeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhC---CCcCcccEEEeccceeEeeeccc-cchhcCcChHHH
Confidence 6777787878999999999999999999997633110 001 0111110 0100000 0000000 011345688999
Q ss_pred HHHHHHHHH--hhCCCEEEEcCC---CcHHHHHH-----HHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEE
Q 017797 189 HKVMIEAVE--NHMPEVIIVDEI---GTEAEAHA-----CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 257 (365)
Q Consensus 189 ~r~~la~al--~~~P~vlilDEp---~~~~d~~~-----i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~ 257 (365)
++..+++++ +.+|+++++||| |+.+|... +..+.+ .|.++|++||. .++..+|+++. .+..|++..
T Consensus 96 e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~-~el~~~~~~~~--~i~~g~~~~ 172 (222)
T cd03285 96 EMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHF-HELTALADEVP--NVKNLHVTA 172 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEech-HHHHHHhhcCC--CeEEEEEEE
Confidence 999999999 789999999999 88888532 244444 48999999996 55667899888 788888876
Q ss_pred ec
Q 017797 258 LG 259 (365)
Q Consensus 258 ~g 259 (365)
.+
T Consensus 173 ~~ 174 (222)
T cd03285 173 LT 174 (222)
T ss_pred EE
Confidence 64
No 423
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.53 E-value=2.8e-14 Score=126.69 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=79.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCC---------cccCC---CCCchhhhhhhhhccCCCc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSN---------EIGGD---GDIPHSAIGTARRMQVPEP 185 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~~~~~-----~~i~~i~~~~---------ei~~~---~~~~~~~~~~~~~~~~~S~ 185 (365)
.+..|+||||||||++|.+|.-.+.-... .......+.. ++.+. ..+|+. +..+++|+
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~-----~~~~~LS~ 97 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQG-----KVEQILSG 97 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCC-----cCcccCCH
Confidence 38899999999999999998765532210 0000000000 00000 012222 23455899
Q ss_pred chhHHHHHHHHHh----hCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 186 SLQHKVMIEAVEN----HMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 186 g~~~r~~la~al~----~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
|++++++++++++ .+|+++++|||++++|. +.+..+.+.|.++|+++|+.+... .+|+++
T Consensus 98 Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi 168 (178)
T cd03239 98 GEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLI 168 (178)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEE
Confidence 9999999999986 68999999999999885 345555566899999999987664 677766
No 424
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.50 E-value=1.1e-14 Score=129.55 Aligned_cols=169 Identities=21% Similarity=0.209 Sum_probs=118.0
Q ss_pred eeeEEEEECCc--ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC------------------------
Q 017797 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF------------------------ 150 (365)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~------------------------ 150 (365)
|.++++.+... .+.+++.++..+..|++-+++|.+|||||-..++|+|....+.
T Consensus 6 IrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk 85 (330)
T COG4170 6 IRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRK 85 (330)
T ss_pred ccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhh
Confidence 45677666332 2245889999999999999999999999999999999887541
Q ss_pred --CCeEEEEcCCCc--------ccC--CCCCchhh--------hhh---------------------hhhccCCCcchhH
Q 017797 151 --QKRVVIVDTSNE--------IGG--DGDIPHSA--------IGT---------------------ARRMQVPEPSLQH 189 (365)
Q Consensus 151 --~~~i~~i~~~~e--------i~~--~~~~~~~~--------~~~---------------------~~~~~~~S~g~~~ 189 (365)
+..|..+.+.+. ++. ...+|.-. +++ ......+..|+-|
T Consensus 86 ~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~Q 165 (330)
T COG4170 86 LVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQ 165 (330)
T ss_pred hhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcce
Confidence 112222222111 000 00000000 000 0122345778999
Q ss_pred HHHHHHHHhhCCCEEEEcCCCcHHHH----HHHHH---HH-HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCH
Q 017797 190 KVMIEAVENHMPEVIIVDEIGTEAEA----HACRS---IA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 261 (365)
Q Consensus 190 r~~la~al~~~P~vlilDEp~~~~d~----~~i~~---~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~ 261 (365)
++++|.|++..|.+||.||||+..+. +.++- +. .+|.+++.++|+.......||++- ++.-|+-+..+..
T Consensus 166 KVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~--VlYCGQ~~ESa~~ 243 (330)
T COG4170 166 KVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKIN--VLYCGQTVESAPS 243 (330)
T ss_pred eeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheE--EEEecccccccch
Confidence 99999999999999999999997663 33333 32 458999999999999999999999 8888999988888
Q ss_pred HHHHHh
Q 017797 262 EARARR 267 (365)
Q Consensus 262 ~~~~~~ 267 (365)
+++...
T Consensus 244 e~l~~~ 249 (330)
T COG4170 244 EELVTM 249 (330)
T ss_pred hHHhcC
Confidence 887764
No 425
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.48 E-value=1.2e-13 Score=122.61 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=109.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcc-----------cC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI-----------GG 165 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei-----------~~ 165 (365)
++++.+.|....+ .+-+++..++.|.-.+++|.|||||||||++|+|---.. +..|.+.. ...+ .+
T Consensus 16 vsgl~f~y~~~dP-~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~-~~~v~Vlg-rsaFhDt~l~~Sgdl~Y 92 (291)
T KOG2355|consen 16 VSGLQFKYKVSDP-IFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG-GGVVQVLG-RSAFHDTSLESSGDLSY 92 (291)
T ss_pred EeccEEecccCCc-eEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc-CCeEEEcC-cCccccccccccCceeE
Confidence 5677777765442 467788889999999999999999999999999964322 22222221 1100 00
Q ss_pred -----------CCCCchh-hh-------h--h--h---------------hhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 166 -----------DGDIPHS-AI-------G--T--A---------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 166 -----------~~~~~~~-~~-------~--~--~---------------~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
.+.+|-+ .+ + . . =++.-.|.||++|+.|+.-|++--+||++|
T Consensus 93 LGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLD 172 (291)
T KOG2355|consen 93 LGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLD 172 (291)
T ss_pred ecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEee
Confidence 0111110 00 0 0 0 112234999999999999999999999999
Q ss_pred CCCcHHHH----HHHHHH---H-HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEe
Q 017797 208 EIGTEAEA----HACRSI---A-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (365)
Q Consensus 208 Ep~~~~d~----~~i~~~---~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~ 258 (365)
|.|-.+|. +++.-+ . ++|.||++.||-.+-.+....+++ -+..|+++..
T Consensus 173 EVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~--yi~~Gkl~~~ 229 (291)
T KOG2355|consen 173 EVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLV--YIKSGKLVDN 229 (291)
T ss_pred eeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEE--EecCCeeeec
Confidence 99998884 223222 2 459999999999988888888888 7888998864
No 426
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.45 E-value=1.4e-13 Score=124.75 Aligned_cols=127 Identities=11% Similarity=0.098 Sum_probs=80.2
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC-CCCeEEEEcC-CCcccCCCC-Cchhhhh--hhhhccCCCcc
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVDT-SNEIGGDGD-IPHSAIG--TARRMQVPEPS 186 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~-~~~~i~~i~~-~~ei~~~~~-~~~~~~~--~~~~~~~~S~g 186 (365)
++++++....|++++|+||||+||||++++++++.--. .+. +++. ..++..... +...... ..+....+|.+
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~---~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e 95 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGC---FVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASE 95 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCC---CcchhhcCccChhheeEecCCccccchhhhHHHHH
Confidence 77888888899999999999999999999998664211 111 1110 011100000 0000000 01123344667
Q ss_pred hhHHHHHHHHHhhCCCEEEEcCCCcHHHH--------HHHHHHHHcCcEEEEEEcCcchhHHhh
Q 017797 187 LQHKVMIEAVENHMPEVIIVDEIGTEAEA--------HACRSIAERGVMLIGTAHGEWLENIIK 242 (365)
Q Consensus 187 ~~~r~~la~al~~~P~vlilDEp~~~~d~--------~~i~~~~~~G~tVi~t~H~~~~~~~~~ 242 (365)
+++. ..+..++.+|+++++|||+.+.|. ..+..+.+.|.++|++||+.+.++.++
T Consensus 96 ~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 96 MSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 7754 455667789999999999765442 345666778999999999999876544
No 427
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=99.45 E-value=1.9e-12 Score=123.37 Aligned_cols=214 Identities=14% Similarity=0.160 Sum_probs=141.2
Q ss_pred cccCCCCeEEEEEecCCceEEEEeCccCceecCC-CCCCHHHHHHHHHHHhcc----CCCeeeEecCce---EEEEEEE-
Q 017797 21 NDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRS-TEVSVEELEYAQSAVGEF----GGDNRAGIEGTL---HRISAIR- 91 (365)
Q Consensus 21 ~~~~~~~~~ei~l~~g~p~~~r~~g~~~~~~~~~-~~~t~~~l~~~~~~~~~~----~~~~~~~~~g~~---~rv~~~~- 91 (365)
.+...+.++||.+....++++-..|.+ ..++ ..+++.++..+++++... -.+..+-+++.+ .|+|+..
T Consensus 52 ~ll~dd~i~dImVn~~~~v~v~~~~~~---~~t~irf~d~~~l~~ii~ria~~vgrriD~~~P~~darLpdGsRvna~~p 128 (355)
T COG4962 52 PLLADDDIEDIMVNGPGRVFVERKGGL---EPTDIRFLDEAALLRIIQRIAAAVGRRIDESQPIVDARLPDGSRLNANSP 128 (355)
T ss_pred hhhcCCCceeEEecCCCcEEEEecCcc---ccCCcccCCHHHHHHHHHHHHHHhCCccccCCceeeeeCCCCceEEeecC
Confidence 333457899999998777877553332 3333 366888999998877321 122222233321 6888876
Q ss_pred --ecCCceeeEEEEECCcccCc--------------chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE
Q 017797 92 --SRKGAIVGLTCRVGRAVSGH--------------IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV 155 (365)
Q Consensus 92 --~~~~~i~~l~~r~~~~~~~~--------------~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~ 155 (365)
...|+ .+++|..++..-. .+-|+..+...-.++|.|-+||||||||++|+++++++ .+++
T Consensus 129 Pva~dGp--~lsIRKf~k~~ltl~dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~--eRvI 204 (355)
T COG4962 129 PVAIDGP--TLSIRKFPKIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSD--ERVI 204 (355)
T ss_pred ccccCCC--cccccccccccccHHHHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCc--ccEE
Confidence 33467 7888876665511 22222234445689999999999999999999999986 4899
Q ss_pred EEcCCCcccCCCCCchhhhhh-h-hhccC-CCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEE-EEE
Q 017797 156 IVDTSNEIGGDGDIPHSAIGT-A-RRMQV-PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVML-IGT 231 (365)
Q Consensus 156 ~i~~~~ei~~~~~~~~~~~~~-~-~~~~~-~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tV-i~t 231 (365)
++++..|+.. ++..... . +...+ ..+--..+-.+.-+|+++||-|+++|.+..+-.+ +.++.++||-= +.|
T Consensus 205 tiEDtaELql----~~ph~vrL~TR~~n~Eg~gevtm~dLvkn~LRmRPDRIiVGEVRG~Ea~d-LL~AmnTGHdG~~~T 279 (355)
T COG4962 205 TIEDTAELQL----AHPHVVRLETRPPNVEGTGEVTMRDLVKNALRMRPDRIIVGEVRGVEALD-LLQAMNTGHDGGMGT 279 (355)
T ss_pred EEeehhhhcc----CCCceEEEeecCCCCCCcceEEHHHHHHHHhhcCccceEEEEecCccHHH-HHHHhccCCCCccee
Confidence 9999888742 2221111 1 11111 1223355667889999999999999999985544 44556888854 899
Q ss_pred EcCcchhHHhhhHHH
Q 017797 232 AHGEWLENIIKNPIL 246 (365)
Q Consensus 232 ~H~~~~~~~~~d~i~ 246 (365)
.|+.+..+.+.+-.-
T Consensus 280 lHans~~ea~~rle~ 294 (355)
T COG4962 280 LHANSPREALTRLEQ 294 (355)
T ss_pred eccCCHHHHHHHHHH
Confidence 999997776654433
No 428
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.45 E-value=2.3e-13 Score=123.00 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=65.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-CCCCeEE---EEcCCCcccCCCCCchhhhhhhhhccCCCc--chhHHHH
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSD-EFQKRVV---IVDTSNEIGGDGDIPHSAIGTARRMQVPEP--SLQHKVM 192 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~-~~~~~i~---~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~--g~~~r~~ 192 (365)
+..|++++|+||||||||||+|+|++..-- ..+..+- +..+...+.......++.. . ..|. ....++.
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~-----~-~~s~~~~e~~~~~ 95 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLR-----D-GISYFYAELRRLK 95 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccc-----c-ccChHHHHHHHHH
Confidence 445799999999999999999999986621 1122221 0001111100000000000 0 0111 1112222
Q ss_pred HHHHHhh--CCCEEEEcCCCcHHHHH--------HHHHHHHcCcEEEEEEcCcchhHHh
Q 017797 193 IEAVENH--MPEVIIVDEIGTEAEAH--------ACRSIAERGVMLIGTAHGEWLENII 241 (365)
Q Consensus 193 la~al~~--~P~vlilDEp~~~~d~~--------~i~~~~~~G~tVi~t~H~~~~~~~~ 241 (365)
-...... +|+++++|||++++|.. .+..+.+.|.++|++||+.+.+..+
T Consensus 96 ~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 96 EIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 2222223 89999999999877731 2444566789999999999876543
No 429
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.3e-13 Score=133.92 Aligned_cols=156 Identities=15% Similarity=0.182 Sum_probs=107.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcc---ccCCCCeEEEEcCCCcccCC-------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL---SDEFQKRVVIVDTSNEIGGD------- 166 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll---~~~~~~~i~~i~~~~ei~~~------- 166 (365)
|.++++.-..... +.+-++.+-.|..++++||||-||||||+-|+.-- +|+ -.+.+.++.......
T Consensus 267 iEnF~ISA~Gk~L--FvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn--IDvLlCEQEvvad~t~Ai~tvl 342 (807)
T KOG0066|consen 267 IENFDISAQGKLL--FVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN--IDVLLCEQEVVADSTSAIDTVL 342 (807)
T ss_pred eeeeeeeccccee--eeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC--CceEeeeeeeeecCcHHHHHHH
Confidence 4566665444433 66777888899999999999999999999987532 333 334444432110000
Q ss_pred ----------------------CCC----------------------ch--hhhh--------hhhhccCCCcchhHHHH
Q 017797 167 ----------------------GDI----------------------PH--SAIG--------TARRMQVPEPSLQHKVM 192 (365)
Q Consensus 167 ----------------------~~~----------------------~~--~~~~--------~~~~~~~~S~g~~~r~~ 192 (365)
+.. +. ..+. ..+...-.|+|.+.|+.
T Consensus 343 ~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvS 422 (807)
T KOG0066|consen 343 KADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVS 422 (807)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehh
Confidence 000 00 0000 00223445999999999
Q ss_pred HHHHHhhCCCEEEEcCCCcHHHHHHHHHHH--Hc--CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEe
Q 017797 193 IEAVENHMPEVIIVDEIGTEAEAHACRSIA--ER--GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (365)
Q Consensus 193 la~al~~~P~vlilDEp~~~~d~~~i~~~~--~~--G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~ 258 (365)
+|+||.+.|-+|+|||||+.+|..++..+- -+ -.|+++++|+..+.+.+|..++ -++..++-.+
T Consensus 423 LARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdII--HLD~qkLhyY 490 (807)
T KOG0066|consen 423 LARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDII--HLDNQKLHYY 490 (807)
T ss_pred HHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHh--hhhhhhhhhh
Confidence 999999999999999999999987665542 12 3799999999999999999999 5566666544
No 430
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.44 E-value=1.7e-13 Score=125.09 Aligned_cols=75 Identities=8% Similarity=-0.122 Sum_probs=52.8
Q ss_pred ccCCCcchhHHHHHHHHH----hhCCCEEEEcCCCcHHHH-------HHHHHHHHc-C-cEEEEEEcCcchhHHhhhHHH
Q 017797 180 MQVPEPSLQHKVMIEAVE----NHMPEVIIVDEIGTEAEA-------HACRSIAER-G-VMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 180 ~~~~S~g~~~r~~la~al----~~~P~vlilDEp~~~~d~-------~~i~~~~~~-G-~tVi~t~H~~~~~~~~~d~i~ 246 (365)
...+|+||+|+..+++++ +.+|+++++|||++++|. +.+..+.+. | .++|++||++......++++.
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~ 203 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMT 203 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceE
Confidence 346799999987776554 479999999999999995 345555555 5 579999998866666665432
Q ss_pred HHHHcCcE
Q 017797 247 SDLIGGVD 254 (365)
Q Consensus 247 ~~ll~~g~ 254 (365)
..++.+|+
T Consensus 204 v~~l~~g~ 211 (213)
T cd03277 204 VLCVYNGP 211 (213)
T ss_pred EEEEecCc
Confidence 11444443
No 431
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=99.44 E-value=3.7e-13 Score=131.12 Aligned_cols=205 Identities=21% Similarity=0.266 Sum_probs=139.4
Q ss_pred CCeEEEEEecCCceEEEE--eCccCceecCCCCCCHHHHHHHHHHHh-c--cCCCeeeEecCc--------eEEEEEEEe
Q 017797 26 GQLLEVILDLGRLPEARY--LGEFGGKYLRSTEVSVEELEYAQSAVG-E--FGGDNRAGIEGT--------LHRISAIRS 92 (365)
Q Consensus 26 ~~~~ei~l~~g~p~~~r~--~g~~~~~~~~~~~~t~~~l~~~~~~~~-~--~~~~~~~~~~g~--------~~rv~~~~~ 92 (365)
+....+||+.|.||+++. .|+|....+.+.|+|++|++.+.+.+- + -..+..+.+... ..|+.+.+.
T Consensus 148 ~~TMSvHLKeg~~P~aK~GkpG~~k~v~l~d~pl~~~ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlrn~RIvIarP 227 (604)
T COG1855 148 EETMSVHLKEGVPPMAKKGKPGEWKLVRLSDKPLTREELEEIAREIIERAKRDPDSFIEIDRPGATVVQLRNYRIVIARP 227 (604)
T ss_pred CcceEEeeccCCCcccccCCCCcEEEEEcCCccCCHHHHHHHHHHHHHHHhhCcCceEEEccCCceEEEeccEEEEEecC
Confidence 579999999999999975 455544567889999999999887662 1 112344444321 157766664
Q ss_pred cCCceeeEEEEECCccc-------Ccchhhhhcc-cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccc
Q 017797 93 RKGAIVGLTCRVGRAVS-------GHIDMVYDLL-HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG 164 (365)
Q Consensus 93 ~~~~i~~l~~r~~~~~~-------~~~~~l~~~l-~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~ 164 (365)
.-.. .+.+.--+..+ +..+.+..-+ +..+.++|.||||+||||+..+++.++... ++-|-+++.+..+.
T Consensus 228 PfSd--~~EITavRPvvk~~ledY~L~dkl~eRL~eraeGILIAG~PGaGKsTFaqAlAefy~~~-GkiVKTmEsPRDl~ 304 (604)
T COG1855 228 PFSD--RWEITAVRPVVKLSLEDYGLSDKLKERLEERAEGILIAGAPGAGKSTFAQALAEFYASQ-GKIVKTMESPRDLQ 304 (604)
T ss_pred CCCC--ceEEEEEeeeEEechhhcCCCHHHHHHHHhhhcceEEecCCCCChhHHHHHHHHHHHhc-CcEEeeccCccccc
Confidence 4322 34333333222 2334444434 457889999999999999999999999876 67778888777663
Q ss_pred CCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcCcchhHHhhh
Q 017797 165 GDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 243 (365)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~~~~~~~~~d 243 (365)
....+. +..-+.+.|.. .--..|+.+||+-|.||.+...|++.+..++-.|+..+.+.|+...++++.+
T Consensus 305 v~~eIT--------QYs~l~g~me~--t~DiLLLvRPDYTIyDEmR~t~DF~vyaDmRLAGVGMVGVVHATrpIDAiQR 373 (604)
T COG1855 305 VSPEIT--------QYSPLEGDMEK--TADILLLVRPDYTIYDEMRKTEDFQVYADLRLAGVGMVGVVHATRPIDAIQR 373 (604)
T ss_pred CChhhh--------hcccccCchhh--hccEEEEecCCceehhhhhcccceEEeeeeecccCceEeEEecCChhHHHHH
Confidence 221111 11122222221 1122456799999999999999999999988899999999999988877653
No 432
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.42 E-value=4.3e-13 Score=122.72 Aligned_cols=135 Identities=14% Similarity=0.112 Sum_probs=83.2
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC--------CCCeEEEEcCCCcccCCCCCchhhhhhhhhccCC
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE--------FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP 183 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~--------~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~ 183 (365)
++++++...+ ++++|+|||||||||+||.+++..-.. ...++.++++ + +++. ...+.+
T Consensus 21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~---i-----~~~~-----~~~~~l 86 (216)
T cd03284 21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDR---I-----FTRI-----GASDDL 86 (216)
T ss_pred eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceee---E-----eccC-----Cchhhh
Confidence 5556655554 899999999999999999997643211 1122222211 1 1111 012223
Q ss_pred CcchhHH----HHHHHHHh--hCCCEEEEcCC---CcHHHHH-----HHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHH
Q 017797 184 EPSLQHK----VMIEAVEN--HMPEVIIVDEI---GTEAEAH-----ACRSIAER-GVMLIGTAHGEWLENIIKNPILSD 248 (365)
Q Consensus 184 S~g~~~r----~~la~al~--~~P~vlilDEp---~~~~d~~-----~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ 248 (365)
+.|++.. ..++.++. .+|+++++||| |+.+|.. .+..+.+. +.++|++||+.++ ..+++++.
T Consensus 87 s~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l-~~l~~~~~-- 163 (216)
T cd03284 87 AGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHEL-TELEGKLP-- 163 (216)
T ss_pred ccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHH-HHHhhcCC--
Confidence 4444332 34555554 69999999999 8888843 34445666 8999999999754 45677655
Q ss_pred HHcCcEEEEecCHHH
Q 017797 249 LIGGVDTVTLGDEEA 263 (365)
Q Consensus 249 ll~~g~iv~~g~~~~ 263 (365)
-+..+++...++.++
T Consensus 164 ~v~~~~~~~~~~~~~ 178 (216)
T cd03284 164 RVKNFHVAVKEKGGG 178 (216)
T ss_pred CeEEEEEEEEeeCCe
Confidence 456677766555443
No 433
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.36 E-value=3.6e-12 Score=143.84 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=71.4
Q ss_pred ccCCCcchhHHHHHHHHHhhC---CCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHH
Q 017797 180 MQVPEPSLQHKVMIEAVENHM---PEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (365)
Q Consensus 180 ~~~~S~g~~~r~~la~al~~~---P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~l 249 (365)
...+|+|+.||+-||.-|..+ +.++||||||.++++ ..+..+.+.|.|||++.|+.+.+.. ||.++ =
T Consensus 1697 ~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~-aD~ii--d 1773 (1809)
T PRK00635 1697 LSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQ-ADYLI--E 1773 (1809)
T ss_pred CCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh-CCEEE--E
Confidence 345699999999999999865 799999999998774 4566678999999999999998865 99888 3
Q ss_pred H------cCcEEEEecCHHHHHHh
Q 017797 250 I------GGVDTVTLGDEEARARR 267 (365)
Q Consensus 250 l------~~g~iv~~g~~~~~~~~ 267 (365)
+ .+|++|+.|+|+++...
T Consensus 1774 lgp~gG~~GG~iva~Gtp~~i~~~ 1797 (1809)
T PRK00635 1774 MGPGSGKTGGKILFSGPPKDISAS 1797 (1809)
T ss_pred cCCCcccCCCEEEEEeCHHHHhhC
Confidence 4 34799999999999764
No 434
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.36 E-value=5.3e-12 Score=130.74 Aligned_cols=83 Identities=20% Similarity=0.218 Sum_probs=69.3
Q ss_pred CCCcchhHHHHHHHHHhhCC---CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHH--
Q 017797 182 VPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL-- 249 (365)
Q Consensus 182 ~~S~g~~~r~~la~al~~~P---~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~l-- 249 (365)
.+|||+-||+-||.-|..+. -+.||||||.++.+ +.+..+.+.|.|||++.|+++.+. .||.++ +|
T Consensus 822 TLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk-~AD~II-DLGP 899 (935)
T COG0178 822 TLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK-TADWII-DLGP 899 (935)
T ss_pred cccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe-ecCEEE-EcCC
Confidence 45999999999999998776 99999999998653 456667899999999999999774 688877 22
Q ss_pred ---HcCcEEEEecCHHHHHH
Q 017797 250 ---IGGVDTVTLGDEEARAR 266 (365)
Q Consensus 250 ---l~~g~iv~~g~~~~~~~ 266 (365)
.++|++|+.|+|+++..
T Consensus 900 eGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 900 EGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCceEEEecCHHHHHh
Confidence 24589999999999976
No 435
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.34 E-value=5.3e-12 Score=115.30 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=69.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHh--cccc------CCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCc--chhHHHH
Q 017797 123 KSILFVGRPGVGKTTVMREIAR--VLSD------EFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP--SLQHKVM 192 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~g--ll~~------~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~--g~~~r~~ 192 (365)
..++|+||||+||||+||.++. ++.. ....++.+.++-..-.. ....+ .+..|. ...+++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~----~~~si-----~~~~S~f~~el~~l~ 100 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMS----SRESV-----SSGQSAFMIDLYQVS 100 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeC----CccCh-----hhccchHHHHHHHHH
Confidence 7899999999999999999983 3322 11222333322110000 00000 011121 2357788
Q ss_pred HHHHHhhCCCEEEEcCCCcHHHH--------HHHHHHHHc---CcEEEEEEcCcchhHHh
Q 017797 193 IEAVENHMPEVIIVDEIGTEAEA--------HACRSIAER---GVMLIGTAHGEWLENII 241 (365)
Q Consensus 193 la~al~~~P~vlilDEp~~~~d~--------~~i~~~~~~---G~tVi~t~H~~~~~~~~ 241 (365)
++++++.+|.++++|||+++.|. ..++.+.+. +.++|++||+.+.+...
T Consensus 101 ~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 101 KALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 88888899999999999998763 234555554 25899999999877654
No 436
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.34 E-value=2.7e-12 Score=114.64 Aligned_cols=111 Identities=14% Similarity=0.226 Sum_probs=64.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh-ccccCCC-------CeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHH
Q 017797 124 SILFVGRPGVGKTTVMREIAR-VLSDEFQ-------KRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEA 195 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~g-ll~~~~~-------~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~ 195 (365)
+++|+||||+||||+||.++- .+-...| ..+.+++.-.... ...+ .. ......+|.+++ .+++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~---~~~d-~~--~~~~s~fs~~~~---~l~~ 71 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRI---GASD-SL--AQGLSTFMVEMK---ETAN 71 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEe---CCCC-ch--hccccHHHHHHH---HHHH
Confidence 368999999999999999982 2222211 1222211100000 0000 00 011223344444 3566
Q ss_pred HHhh--CCCEEEEcCCCcHHHHH--------HHHHHHHc-CcEEEEEEcCcchhHHhhhH
Q 017797 196 VENH--MPEVIIVDEIGTEAEAH--------ACRSIAER-GVMLIGTAHGEWLENIIKNP 244 (365)
Q Consensus 196 al~~--~P~vlilDEp~~~~d~~--------~i~~~~~~-G~tVi~t~H~~~~~~~~~d~ 244 (365)
++.. +|+++++|||+++.|+. .++.+.++ |.++|++||..+. ..+++.
T Consensus 72 ~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l-~~~~~~ 130 (185)
T smart00534 72 ILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHEL-TKLADE 130 (185)
T ss_pred HHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHH-HHHhhc
Confidence 6666 99999999999987742 23444554 8999999999964 445543
No 437
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.33 E-value=5.5e-12 Score=124.70 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=121.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC----cc-----cCCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----EI-----GGDG 167 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~----ei-----~~~~ 167 (365)
+++|+..-.+. ...+.++++.+..|++++|.|-.|-|-+.|+.+|+|+..+.. ++|.+-..+. .. .+..
T Consensus 260 V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~-G~I~l~G~~v~~~~~~~~~r~~G~~ 337 (501)
T COG3845 260 VEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS-GRILLNGKDVLGRLSPRERRRLGLA 337 (501)
T ss_pred EeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCC-ceEEECCEeccccCCHHHHHhcCCc
Confidence 44555543332 234889999999999999999999999999999999997664 4444332221 00 0001
Q ss_pred CCchhh-----------------------------------hhh----------------hhhccCCCcchhHHHHHHHH
Q 017797 168 DIPHSA-----------------------------------IGT----------------ARRMQVPEPSLQHKVMIEAV 196 (365)
Q Consensus 168 ~~~~~~-----------------------------------~~~----------------~~~~~~~S~g~~~r~~la~a 196 (365)
.+|.+. +.. ..+...+|||++|++.++|=
T Consensus 338 ~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaRE 417 (501)
T COG3845 338 YVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARE 417 (501)
T ss_pred cCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhh
Confidence 111110 000 02234569999999999999
Q ss_pred HhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHH
Q 017797 197 ENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 263 (365)
Q Consensus 197 l~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~ 263 (365)
+..+|++||+.+||.++|. +.+.++++.|..|+.++-+++++-.+||++. +|.+|+++...++++
T Consensus 418 l~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIa--Vi~~Gri~~~~~~~~ 489 (501)
T COG3845 418 LARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIA--VIYEGRIVGIVPPEE 489 (501)
T ss_pred hccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheee--eeeCCceeccccccc
Confidence 9999999999999999996 3456667889999999999999999999999 999999998776665
No 438
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.31 E-value=1.8e-12 Score=125.44 Aligned_cols=135 Identities=19% Similarity=0.296 Sum_probs=94.6
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc--------cCCCCeEEEE--------cCC--CcccCC------
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--------DEFQKRVVIV--------DTS--NEIGGD------ 166 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~--------~~~~~~i~~i--------~~~--~ei~~~------ 166 (365)
.++++++.+++|++++|+|++||||||++|+|+|... |++ +.|-+. +.. .++...
T Consensus 398 vlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~s-g~v~vp~nt~~a~iPge~Ep~f~~~tilehl 476 (593)
T COG2401 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDS-GKVEVPKNTVSALIPGEYEPEFGEVTILEHL 476 (593)
T ss_pred eeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCC-CceeccccchhhccCcccccccCchhHHHHH
Confidence 4888999999999999999999999999999999864 222 222111 111 111100
Q ss_pred CCCchh---hhh------------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH-------HHHHH-HH
Q 017797 167 GDIPHS---AIG------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSI-AE 223 (365)
Q Consensus 167 ~~~~~~---~~~------------~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~-------~i~~~-~~ 223 (365)
...+.+ ... ..+....+|.||+.|.-||.++...|.++++||-.+.+|.. -+.++ ++
T Consensus 477 ~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe 556 (593)
T COG2401 477 RSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE 556 (593)
T ss_pred hhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 000000 000 01445678999999999999999999999999999998842 23333 35
Q ss_pred cCcEEEEEEcCcchhHHh-hhHHH
Q 017797 224 RGVMLIGTAHGEWLENII-KNPIL 246 (365)
Q Consensus 224 ~G~tVi~t~H~~~~~~~~-~d~i~ 246 (365)
.|.|++++||..+..+++ -|.++
T Consensus 557 ~giTlivvThrpEv~~AL~PD~li 580 (593)
T COG2401 557 AGITLIVVTHRPEVGNALRPDTLI 580 (593)
T ss_pred hCCeEEEEecCHHHHhccCCceeE
Confidence 699999999999988887 44444
No 439
>PRK13695 putative NTPase; Provisional
Probab=99.23 E-value=8.6e-11 Score=103.67 Aligned_cols=129 Identities=24% Similarity=0.244 Sum_probs=84.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeE-EEEcCCC-----cccCC--------------CCC-chhhhhhhhhccC
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRV-VIVDTSN-----EIGGD--------------GDI-PHSAIGTARRMQV 182 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~~~~~~i-~~i~~~~-----ei~~~--------------~~~-~~~~~~~~~~~~~ 182 (365)
.++|+|+|||||||+++.+++.+.+. +..+ .++.+.. ...+. ... ..... ......
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~ 78 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRV--GKYVVN 78 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCce--eeEEEe
Confidence 47899999999999999998877542 3332 2332110 00000 000 00000 011233
Q ss_pred CCcchhHHHHHHHHHhhCCCEEEEcCCCc--HHH---HHHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEE
Q 017797 183 PEPSLQHKVMIEAVENHMPEVIIVDEIGT--EAE---AHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 257 (365)
Q Consensus 183 ~S~g~~~r~~la~al~~~P~vlilDEp~~--~~d---~~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~ 257 (365)
+|++++....+......+|++|++|||+. ..+ .+++..+.+.|.++|+++|... ...+++++. .+.+|+++.
T Consensus 79 lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~-~~~~~~~i~--~~~~~~i~~ 155 (174)
T PRK13695 79 LEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRS-VHPFVQEIK--SRPGGRVYE 155 (174)
T ss_pred hHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchh-hHHHHHHHh--ccCCcEEEE
Confidence 56677777766666677999999999654 333 4677777788999999999854 557899998 888898876
Q ss_pred e
Q 017797 258 L 258 (365)
Q Consensus 258 ~ 258 (365)
.
T Consensus 156 ~ 156 (174)
T PRK13695 156 L 156 (174)
T ss_pred E
Confidence 5
No 440
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=2.5e-11 Score=115.12 Aligned_cols=66 Identities=14% Similarity=0.178 Sum_probs=52.3
Q ss_pred CCcchhHHHHHHHHHhh----CCCEEEEcCCCcHHHHHH-------HHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHc
Q 017797 183 PEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIG 251 (365)
Q Consensus 183 ~S~g~~~r~~la~al~~----~P~vlilDEp~~~~d~~~-------i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~ 251 (365)
+|+|++|+++++++++. +|+++++|||++++|... +..+. .+.++|+++|+.... .+||+++ ++.
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~-~~~tii~isH~~~~~-~~~d~~~--~l~ 246 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS-RSHQVLCITHLPQVA-AMADNHF--LVE 246 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEechHHHH-HhcCcEE--EEE
Confidence 69999999999986654 999999999999998643 33332 478999999999855 5788877 554
Q ss_pred C
Q 017797 252 G 252 (365)
Q Consensus 252 ~ 252 (365)
.
T Consensus 247 ~ 247 (276)
T cd03241 247 K 247 (276)
T ss_pred E
Confidence 4
No 441
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.21 E-value=7.1e-11 Score=108.43 Aligned_cols=126 Identities=13% Similarity=0.132 Sum_probs=73.3
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHh-ccccCCCCeEEEEcCCCcccCCCCCchhhhhhh-hhccCCCcchhH
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIAR-VLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTA-RRMQVPEPSLQH 189 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~g-ll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~-~~~~~~S~g~~~ 189 (365)
+.++++.+.+|+.++|+||||+||||+++.+++ .+.+..|. ...- ....+.....+.. .++.. ....-.|.-+..
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~-~v~a-~~~~~~~~~~i~~-~~~~~d~~~~~~StF~~e 97 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGS-FVPA-SSATLSIFDSVLT-RMGASDSIQHGMSTFMVE 97 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCC-EEEc-CceEEeccceEEE-EecCccccccccchHHHH
Confidence 677888888999999999999999999999999 44444332 1111 1111211100000 00000 001112222222
Q ss_pred HHHHHHHH--hhCCCEEEEcCCCcH---HHH-----HHHHHHHHc-CcEEEEEEcCcchhHH
Q 017797 190 KVMIEAVE--NHMPEVIIVDEIGTE---AEA-----HACRSIAER-GVMLIGTAHGEWLENI 240 (365)
Q Consensus 190 r~~la~al--~~~P~vlilDEp~~~---~d~-----~~i~~~~~~-G~tVi~t~H~~~~~~~ 240 (365)
-..++.++ +.+|.++|+|||+++ .|. ..+..+.+. +.++|++||+.+..+.
T Consensus 98 ~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 98 LSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 22233333 357999999999543 342 345566666 8999999999987653
No 442
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.15 E-value=3.3e-11 Score=128.63 Aligned_cols=118 Identities=15% Similarity=0.187 Sum_probs=76.2
Q ss_pred hhhcccCC-cEEEEEcCCCCcHHHHHHHHHhc-cccCCCCeEEEEcCC--CcccCCC----CCc-hhhhhhhhhccCCCc
Q 017797 115 VYDLLHYG-KSILFVGRPGVGKTTVMREIARV-LSDEFQKRVVIVDTS--NEIGGDG----DIP-HSAIGTARRMQVPEP 185 (365)
Q Consensus 115 l~~~l~~g-~~v~iiGpnGsGKTTllr~l~gl-l~~~~~~~i~~i~~~--~ei~~~~----~~~-~~~~~~~~~~~~~S~ 185 (365)
++..+..+ +.++|+||||+||||+|+.|++. +.+..|. +++.. ..+.... .+. ...+ ......+|.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~---~Vpa~~~~~~~~~d~i~~~i~~~~si--~~~LStfS~ 388 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI---PIPANEHSEIPYFEEIFADIGDEQSI--EQNLSTFSG 388 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---CccCCccccccchhheeeecChHhHH--hhhhhHHHH
Confidence 45556655 79999999999999999999998 3333221 11111 1111100 000 0111 123455688
Q ss_pred chhHHHHHHHHHhhCCCEEEEcCCCcHHHH--------HHHHHHHHcCcEEEEEEcCcchh
Q 017797 186 SLQHKVMIEAVENHMPEVIIVDEIGTEAEA--------HACRSIAERGVMLIGTAHGEWLE 238 (365)
Q Consensus 186 g~~~r~~la~al~~~P~vlilDEp~~~~d~--------~~i~~~~~~G~tVi~t~H~~~~~ 238 (365)
++++...+...+ ..|.++|+|||+++.|+ ..+..+.+.|.++|+|||+.++.
T Consensus 389 ~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 389 HMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred HHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 888776665544 58999999999998774 23445567799999999998754
No 443
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.11 E-value=5.7e-11 Score=128.87 Aligned_cols=155 Identities=16% Similarity=0.227 Sum_probs=109.7
Q ss_pred CcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC------------------CCeEEEEcCCC-ccc------
Q 017797 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF------------------QKRVVIVDTSN-EIG------ 164 (365)
Q Consensus 110 ~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~------------------~~~i~~i~~~~-ei~------ 164 (365)
..+++++..+++|++++++|||||||||||++++|-+.... .+.+.|+.+.. .++
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre 208 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE 208 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence 45899999999999999999999999999999999886331 12233332211 000
Q ss_pred -----CC-C-------CCchhh-h-----------hh---------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCC
Q 017797 165 -----GD-G-------DIPHSA-I-----------GT---------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (365)
Q Consensus 165 -----~~-~-------~~~~~~-~-----------~~---------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~ 210 (365)
.. . .+.+.. . +. ..-....|||+|+|+.++-+++..|.++..||++
T Consensus 209 TldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 209 TLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred hhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence 00 0 011100 0 00 0112234999999999999999999999999999
Q ss_pred cHHHH-------HHHHHHHH-cCcEEEEEEcCc-chhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 211 TEAEA-------HACRSIAE-RGVMLIGTAHGE-WLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 211 ~~~d~-------~~i~~~~~-~G~tVi~t~H~~-~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
.++|. +.+++++. .+.|++++.|.. ...-.+-|.++ +|..|++|..|..++...
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~--lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVI--LLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhhee--eeeccceEEeccHHHHHH
Confidence 99993 44555543 478888888765 34556788999 999999999999988764
No 444
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.05 E-value=3.9e-10 Score=103.26 Aligned_cols=126 Identities=13% Similarity=0.127 Sum_probs=72.8
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC-CCCeEEEEcCC-CcccCCCC-Cchhhhhhhhh-ccCCCcch
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVDTS-NEIGGDGD-IPHSAIGTARR-MQVPEPSL 187 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~-~~~~i~~i~~~-~ei~~~~~-~~~~~~~~~~~-~~~~S~g~ 187 (365)
++++++...+|++++|+||||+||||+++.++...--. .|. +++.. ..+..... +.. ++.... ..-.|.-+
T Consensus 20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~---~vpa~~~~i~~~~~i~~~--~~~~d~~~~~~StF~ 94 (218)
T cd03286 20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM---DVPAKSMRLSLVDRIFTR--IGARDDIMKGESTFM 94 (218)
T ss_pred EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC---ccCccccEeccccEEEEe--cCcccccccCcchHH
Confidence 77888888889999999999999999999998864211 011 11110 11110000 000 000000 01122222
Q ss_pred hHHHHHHHHH--hhCCCEEEEcCCCcHHHH-------H-HHHHHHHc-CcEEEEEEcCcchhHHhh
Q 017797 188 QHKVMIEAVE--NHMPEVIIVDEIGTEAEA-------H-ACRSIAER-GVMLIGTAHGEWLENIIK 242 (365)
Q Consensus 188 ~~r~~la~al--~~~P~vlilDEp~~~~d~-------~-~i~~~~~~-G~tVi~t~H~~~~~~~~~ 242 (365)
..-..++.++ ..+|.++++|||+.+.+. . .+..+.+. |.++|++||+.+....++
T Consensus 95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 2222333333 368999999999765431 2 25566665 899999999998776543
No 445
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.05 E-value=8.4e-10 Score=94.57 Aligned_cols=115 Identities=23% Similarity=0.186 Sum_probs=70.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCC---------CCCchhhhhhhhhccCCCcchhHHHHHH
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~---------~~~~~~~~~~~~~~~~~S~g~~~r~~la 194 (365)
+++|.||||+||||+++.+++...+. +..+.+++........ .................+.....+...+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 47899999999999999999998764 6788887654332100 0000000000001111223334455677
Q ss_pred HHHhhCCCEEEEcCCCcHHHH-------------HH---HH-HHHHcCcEEEEEEcCcchhH
Q 017797 195 AVENHMPEVIIVDEIGTEAEA-------------HA---CR-SIAERGVMLIGTAHGEWLEN 239 (365)
Q Consensus 195 ~al~~~P~vlilDEp~~~~d~-------------~~---i~-~~~~~G~tVi~t~H~~~~~~ 239 (365)
.+...+|+++|+||++.-.+. +. +. .+.+.|+++++++|..+...
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~ 141 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDK 141 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccc
Confidence 888899999999999953211 22 22 23346899999999886443
No 446
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=1.5e-10 Score=125.26 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=75.0
Q ss_pred hccCCCcchhHHHHHHHHHhhCC--CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHH
Q 017797 179 RMQVPEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (365)
Q Consensus 179 ~~~~~S~g~~~r~~la~al~~~P--~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~l 249 (365)
....+|+|++||+.||++|.++| +++|+|||++++|+ +.+.++.+.|.|||+++|+.+++. .||+++ .
T Consensus 484 ~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~vi--~ 560 (924)
T TIGR00630 484 AAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADYVI--D 560 (924)
T ss_pred CcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCEEE--E
Confidence 35567999999999999999986 89999999999985 456677788999999999999886 899999 8
Q ss_pred H------cCcEEEEecCHHHHHH
Q 017797 250 I------GGVDTVTLGDEEARAR 266 (365)
Q Consensus 250 l------~~g~iv~~g~~~~~~~ 266 (365)
| ++|++++.|+++++..
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred ecccccCCCCEEeeccCHHHHhc
Confidence 8 7899999999998753
No 447
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=6.5e-10 Score=105.10 Aligned_cols=60 Identities=12% Similarity=-0.013 Sum_probs=44.0
Q ss_pred CCCcchhHHHHHHHHHh---------hCCCEEEEcCCCcHHHHHH---HHH-HHHcCcEEEEEEcCcchhHHhh
Q 017797 182 VPEPSLQHKVMIEAVEN---------HMPEVIIVDEIGTEAEAHA---CRS-IAERGVMLIGTAHGEWLENIIK 242 (365)
Q Consensus 182 ~~S~g~~~r~~la~al~---------~~P~vlilDEp~~~~d~~~---i~~-~~~~G~tVi~t~H~~~~~~~~~ 242 (365)
.+|.|+++++.++++++ .+|+++++|||++++|... +.. +.+.+ .+++++|+......+|
T Consensus 183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTTDLADFDALW 255 (270)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeCCchhccchh
Confidence 35999999999999875 6999999999999999643 222 23344 5666666655555555
No 448
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.04 E-value=1.7e-10 Score=125.06 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=74.9
Q ss_pred hccCCCcchhHHHHHHHHHhhCC--CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHH
Q 017797 179 RMQVPEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (365)
Q Consensus 179 ~~~~~S~g~~~r~~la~al~~~P--~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~l 249 (365)
....+|+|++||+.||++|..+| +++||||||+++|+ ++++.+++.|.|||+++|+.+++. .||+++ +
T Consensus 486 ~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD~vi--~ 562 (943)
T PRK00349 486 SAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AADYIV--D 562 (943)
T ss_pred chhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEE--E
Confidence 45567999999999999999997 99999999999985 456667778999999999999876 699999 8
Q ss_pred H------cCcEEEEecCHHHHHH
Q 017797 250 I------GGVDTVTLGDEEARAR 266 (365)
Q Consensus 250 l------~~g~iv~~g~~~~~~~ 266 (365)
| ++|++++.|+++++..
T Consensus 563 LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 563 IGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred eccccCCCCCEEeeccCHHHHhc
Confidence 8 8899999999998754
No 449
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.04 E-value=4.2e-10 Score=99.73 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=69.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC--CCc-ccC---CCCCchhhh---hh----hhhccCCCcchhH-
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--SNE-IGG---DGDIPHSAI---GT----ARRMQVPEPSLQH- 189 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~--~~e-i~~---~~~~~~~~~---~~----~~~~~~~S~g~~~- 189 (365)
+++|.||||+||||+...++-..... +.++.|+.- +.+ +.. ..+++-..+ +. .......|+++++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 37899999999999887665443222 566767642 211 100 001111110 00 0112234667666
Q ss_pred -----HHHHHHHHhhCCCEEEEcCCCcHHH----------HHHHHHHHHcCcEEEEEEcCcch
Q 017797 190 -----KVMIEAVENHMPEVIIVDEIGTEAE----------AHACRSIAERGVMLIGTAHGEWL 237 (365)
Q Consensus 190 -----r~~la~al~~~P~vlilDEp~~~~d----------~~~i~~~~~~G~tVi~t~H~~~~ 237 (365)
......+...+|+++++|||+...| .+.+..+++.|+|+|+++|....
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 4555566678999999999998776 23555667789999999998764
No 450
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.00 E-value=3.2e-10 Score=121.36 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=75.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc-ccCCCCeEEEEcCC--CcccCCCCCchhhhh----hhhhccCCCcchhHHHHHH
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVL-SDEFQKRVVIVDTS--NEIGGDGDIPHSAIG----TARRMQVPEPSLQHKVMIE 194 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll-~~~~~~~i~~i~~~--~ei~~~~~~~~~~~~----~~~~~~~~S~g~~~r~~la 194 (365)
+.+++|+|||++||||+|+.++... -...|. +++.. ..+.....+.. .++ .......+|.++++...+.
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~---~vpa~~~~~i~~~~~i~~-~ig~~~si~~~lStfS~~m~~~~~Il 402 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGL---PIPANEPSEIPVFKEIFA-DIGDEQSIEQSLSTFSGHMTNIVRIL 402 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCC---CcccCCCccccccceEEE-ecCCccchhhchhHHHHHHHHHHHHH
Confidence 4689999999999999999996542 111111 11111 11211000000 000 0122445678898888877
Q ss_pred HHHhhCCCEEEEcCCCcHHHHH--------HHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 195 AVENHMPEVIIVDEIGTEAEAH--------ACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 195 ~al~~~P~vlilDEp~~~~d~~--------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
+++ .+|.++++|||+++.|+. .+..+.+.|.++|+|||+.+.....++...
T Consensus 403 ~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~ 461 (782)
T PRK00409 403 EKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREG 461 (782)
T ss_pred HhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCC
Confidence 766 799999999999987742 234456779999999999887766555433
No 451
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.98 E-value=7.4e-09 Score=95.70 Aligned_cols=115 Identities=18% Similarity=0.165 Sum_probs=65.5
Q ss_pred cccCCcEEEEEcCCCCcHHHH-HHHHHhccccCCCCeEEEEcCCCc---ccC---CCCCchhhh---hh---hhhccCCC
Q 017797 118 LLHYGKSILFVGRPGVGKTTV-MREIARVLSDEFQKRVVIVDTSNE---IGG---DGDIPHSAI---GT---ARRMQVPE 184 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTl-lr~l~gll~~~~~~~i~~i~~~~e---i~~---~~~~~~~~~---~~---~~~~~~~S 184 (365)
-+++|++++|+|||||||||+ ++.+.+.+.+ +.++.|+..... +.. .-++.-... +. .......+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~ 97 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLS 97 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEeccccc
Confidence 378899999999999999999 6888887765 456666643211 100 000000000 00 00001123
Q ss_pred cchhHHHHHHHHHh----hCCCEEEEcCCCcHH----HH-------HHHHHHHHcCcEEEEEEcC
Q 017797 185 PSLQHKVMIEAVEN----HMPEVIIVDEIGTEA----EA-------HACRSIAERGVMLIGTAHG 234 (365)
Q Consensus 185 ~g~~~r~~la~al~----~~P~vlilDEp~~~~----d~-------~~i~~~~~~G~tVi~t~H~ 234 (365)
+...++..+...+. .+|+++++|||++.. |. +.++.+++.|.++++|+|.
T Consensus 98 ~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~ 162 (230)
T PRK08533 98 GNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANP 162 (230)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 33333333333333 479999999999976 42 2334455678887776553
No 452
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.94 E-value=6.5e-09 Score=85.72 Aligned_cols=109 Identities=27% Similarity=0.358 Sum_probs=68.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchh--hhhhhhhccCCCcchhHHHHHHHHHhh
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHS--AIGTARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~--~~~~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
+..++|+||||+||||+++.|+..+.... ..+.++......... ... .................+..+..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEV---LDQLLLIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccC---HHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999997652 345665543221100 000 000001122334556677778888888
Q ss_pred CCCEEEEcCCCcHHHHHH-------------HHHHHHcCcEEEEEEcC
Q 017797 200 MPEVIIVDEIGTEAEAHA-------------CRSIAERGVMLIGTAHG 234 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~~~-------------i~~~~~~G~tVi~t~H~ 234 (365)
.|++|++||+....+... .......+..+|+++|.
T Consensus 78 ~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 78 KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 899999999988443211 12223456788888885
No 453
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.93 E-value=1.1e-09 Score=106.62 Aligned_cols=124 Identities=17% Similarity=0.228 Sum_probs=85.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCe-----EEEEcCCCcccCCCCC--------------chh--------hhh
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKR-----VVIVDTSNEIGGDGDI--------------PHS--------AIG 175 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~~~~~~~-----i~~i~~~~ei~~~~~~--------------~~~--------~~~ 175 (365)
+++..+|.||.||||++++++|.+.|+.+.. |.+.++...--..+.+ |+. .+.
T Consensus 368 eiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie 447 (592)
T KOG0063|consen 368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIE 447 (592)
T ss_pred eeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHH
Confidence 4789999999999999999999998885543 3333332110000000 000 000
Q ss_pred --hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH-------HHHH-HHHcCcEEEEEEcCcchhHHhhhHH
Q 017797 176 --TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRS-IAERGVMLIGTAHGEWLENIIKNPI 245 (365)
Q Consensus 176 --~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~-------~i~~-~~~~G~tVi~t~H~~~~~~~~~d~i 245 (365)
.-+.++.+|+|+.||++++.+|-...++.++|||..-+|-+ .++. +.....|-+.+.|+.-.+..++|++
T Consensus 448 ~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrv 527 (592)
T KOG0063|consen 448 NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRV 527 (592)
T ss_pred HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhccee
Confidence 01456778999999999999999999999999999988742 2222 3456788899999876666666665
Q ss_pred H
Q 017797 246 L 246 (365)
Q Consensus 246 ~ 246 (365)
+
T Consensus 528 i 528 (592)
T KOG0063|consen 528 I 528 (592)
T ss_pred E
Confidence 5
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.90 E-value=2.6e-08 Score=92.01 Aligned_cols=134 Identities=19% Similarity=0.210 Sum_probs=79.6
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHh-ccccCCCCeEEEEcCCCcccC------CCCCchhhh---hh-------hhhc
Q 017797 118 LLHYGKSILFVGRPGVGKTTVMREIAR-VLSDEFQKRVVIVDTSNEIGG------DGDIPHSAI---GT-------ARRM 180 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTllr~l~g-ll~~~~~~~i~~i~~~~ei~~------~~~~~~~~~---~~-------~~~~ 180 (365)
=+++|.+++|.|+|||||||+...++- .+. . +.++.|+........ ..++.-... +. ....
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~-g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-Q-GKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-C-CCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccc
Confidence 467889999999999999999999853 333 2 678888754322100 000000000 00 0111
Q ss_pred cCCCcchhHHHHHHHHHhh--CCCEEEEcCCCcHHH---H----H---HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHH
Q 017797 181 QVPEPSLQHKVMIEAVENH--MPEVIIVDEIGTEAE---A----H---ACRSIAERGVMLIGTAHGEWLENIIKNPILSD 248 (365)
Q Consensus 181 ~~~S~g~~~r~~la~al~~--~P~vlilDEp~~~~d---~----~---~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ 248 (365)
...+.++.+.+........ +|+++++|||+...+ . + .+..+++.|.|+++++|........++++.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~-- 176 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIR-- 176 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHH--
Confidence 1224455555555554544 999999999996433 1 2 234446779999999998776555555554
Q ss_pred HHcCcEE
Q 017797 249 LIGGVDT 255 (365)
Q Consensus 249 ll~~g~i 255 (365)
.+.+|.+
T Consensus 177 ~l~DgvI 183 (234)
T PRK06067 177 SICDVYL 183 (234)
T ss_pred hheEEEE
Confidence 4444554
No 455
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.65 E-value=6e-08 Score=94.76 Aligned_cols=128 Identities=18% Similarity=0.228 Sum_probs=92.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE--------EEcCCCcccC------------------CCCCchh
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------IVDTSNEIGG------------------DGDIPHS 172 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~--------~i~~~~ei~~------------------~~~~~~~ 172 (365)
..+|++.+++|.||-||||-++.++|-++|+.++-.. ......|+.. ...+|..
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 3579999999999999999999999999988553110 0000001000 0000100
Q ss_pred h---hh------------------------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHH
Q 017797 173 A---IG------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HAC 218 (365)
Q Consensus 173 ~---~~------------------------~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i 218 (365)
. ++ ..+.++.+|+|+-||.++|.+-.+..|+.++|||.+.+|. ..+
T Consensus 177 ~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~I 256 (592)
T KOG0063|consen 177 VKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITI 256 (592)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHH
Confidence 0 00 0144567899999999999999999999999999999995 356
Q ss_pred HHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 219 RSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 219 ~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
+.+.+...=||++.|+.+..+.+.|-+.
T Consensus 257 Rsl~~p~~YiIVVEHDLsVLDylSDFiC 284 (592)
T KOG0063|consen 257 RSLINPDRYIIVVEHDLSVLDYLSDFIC 284 (592)
T ss_pred HHhhCCCCeEEEEEeechHHHhhhccee
Confidence 6777778889999999998888877766
No 456
>PRK09183 transposase/IS protein; Provisional
Probab=98.64 E-value=1e-07 Score=89.67 Aligned_cols=135 Identities=21% Similarity=0.304 Sum_probs=76.5
Q ss_pred hhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHH
Q 017797 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVM 192 (365)
Q Consensus 113 ~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~ 192 (365)
..+++ ++.|+.++|+||||+|||||+.+|+...... +..+.++... ++. . .+..... .++. ...
T Consensus 94 ~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~-G~~v~~~~~~-~l~-----~--~l~~a~~----~~~~--~~~ 157 (259)
T PRK09183 94 RSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRA-GIKVRFTTAA-DLL-----L--QLSTAQR----QGRY--KTT 157 (259)
T ss_pred hcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEeHH-HHH-----H--HHHHHHH----CCcH--HHH
Confidence 33444 7889999999999999999999997765443 5677666432 110 0 0000000 0110 111
Q ss_pred HHHHHhhCCCEEEEcCCCcH----HHH----HHHHHHHHcCcEEEEEEcCcc-hhHH------hhhHHHHHHHcCcEEEE
Q 017797 193 IEAVENHMPEVIIVDEIGTE----AEA----HACRSIAERGVMLIGTAHGEW-LENI------IKNPILSDLIGGVDTVT 257 (365)
Q Consensus 193 la~al~~~P~vlilDEp~~~----~d~----~~i~~~~~~G~tVi~t~H~~~-~~~~------~~d~i~~~ll~~g~iv~ 257 (365)
+.. ....|+++++||.... .+. +.+....+++.+||.|....+ +.+. ++++++..++++..++.
T Consensus 158 ~~~-~~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~~~~~~i~ 236 (259)
T PRK09183 158 LQR-GVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQ 236 (259)
T ss_pred HHH-HhcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCCHHHHHHHhcCchhHHHHHHHHHhcceEEEe
Confidence 112 2468999999999651 222 333333456655444444433 2222 34567767888888877
Q ss_pred ecCHHHH
Q 017797 258 LGDEEAR 264 (365)
Q Consensus 258 ~g~~~~~ 264 (365)
....+.+
T Consensus 237 ~~g~s~R 243 (259)
T PRK09183 237 IKGESYR 243 (259)
T ss_pred ecCCCCc
Confidence 7554443
No 457
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.60 E-value=2.8e-07 Score=79.25 Aligned_cols=127 Identities=27% Similarity=0.383 Sum_probs=73.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeE-------------------EEEcCCCc--ccCCCCCchhhhhhhhhccC
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRV-------------------VIVDTSNE--IGGDGDIPHSAIGTARRMQV 182 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~~~~~~i-------------------~~i~~~~e--i~~~~~~~~~~~~~~~~~~~ 182 (365)
-++|+|+||+||||++.-|+..+... +.++ +.++...+ ++.. +.....++ +..+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~-~~~~~rvG---kY~V 81 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARV-GFSRPRVG---KYGV 81 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEc-CCCCcccc---eEEe
Confidence 58999999999999999999887654 2221 11111111 1100 00111111 1111
Q ss_pred CCcchh--HHHHHHHHHhhCCCEEEEcCCCcHHH-----HHHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEE
Q 017797 183 PEPSLQ--HKVMIEAVENHMPEVIIVDEIGTEAE-----AHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 255 (365)
Q Consensus 183 ~S~g~~--~r~~la~al~~~P~vlilDEp~~~~d-----~~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~i 255 (365)
.-.+.. .--++.+|+. ..|+||+||++-.+- .+++.+...++..+|+|.|..+ .++.+..+-..|.+
T Consensus 82 ~v~~le~i~~~al~rA~~-~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrs-----r~P~v~~ik~~~~v 155 (179)
T COG1618 82 NVEGLEEIAIPALRRALE-EADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRS-----RHPLVQRIKKLGGV 155 (179)
T ss_pred eHHHHHHHhHHHHHHHhh-cCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEeccc-----CChHHHHhhhcCCE
Confidence 111111 1124444544 489999999988654 3677788888999999999876 26666556666665
Q ss_pred EEecCH
Q 017797 256 VTLGDE 261 (365)
Q Consensus 256 v~~g~~ 261 (365)
+.+=++
T Consensus 156 ~v~lt~ 161 (179)
T COG1618 156 YVFLTP 161 (179)
T ss_pred EEEEcc
Confidence 553333
No 458
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.60 E-value=1.5e-07 Score=94.44 Aligned_cols=147 Identities=16% Similarity=0.132 Sum_probs=88.6
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-cccCC--CCCchh----hhhhhhhccCC
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIGGD--GDIPHS----AIGTARRMQVP 183 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~-ei~~~--~~~~~~----~~~~~~~~~~~ 183 (365)
.++.+ +.+.+|+.++|+|+||+|||||+++|+++..++. ..+..+.++. ++... ..+... .+.... ...-
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~-gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~-~~~~ 224 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADL-NVIALIGERGREVREFIERDLGPEGLKRSIVVVA-TSDQ 224 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCe-EEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE-CCCC
Confidence 36667 7789999999999999999999999999998763 3444443332 22100 000000 000000 0112
Q ss_pred CcchhHHHHHHH-----HH-hhCCCE-EEEcCCCc-------------------HHHH-------HHHHHHH--HcCc--
Q 017797 184 EPSLQHKVMIEA-----VE-NHMPEV-IIVDEIGT-------------------EAEA-------HACRSIA--ERGV-- 226 (365)
Q Consensus 184 S~g~~~r~~la~-----al-~~~P~v-lilDEp~~-------------------~~d~-------~~i~~~~--~~G~-- 226 (365)
+..++.+...++ -+ -+.-+| |++|-.|. +.|+ +.+..+. +.|.
T Consensus 225 ~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT 304 (438)
T PRK07721 225 PALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSIT 304 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCee
Confidence 334444433221 11 123344 56674433 4443 3344444 2575
Q ss_pred ---EEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 227 ---MLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 227 ---tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
||++.+|++++ .+||++. .+.+|+++..++..+.
T Consensus 305 ~~~TVlv~~hdm~e--~i~d~v~--~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 305 AFYTVLVDGDDMNE--PIADTVR--GILDGHFVLDRQLANK 341 (438)
T ss_pred eEEEEEEECCCCCc--hhhhhEE--EecCEEEEEeccHHHC
Confidence 99999999983 7899999 8999999999887664
No 459
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.59 E-value=1.7e-07 Score=101.74 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=72.8
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcc--------ccCCCCeEEEEcCCCcccCCCCCchhhhhhh-hhccC
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--------SDEFQKRVVIVDTSNEIGGDGDIPHSAIGTA-RRMQV 182 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll--------~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~-~~~~~ 182 (365)
+.++.+. ..+.+++|+|||.+||||+||.++-.. -|.....+.+++. +. . .++.. .-..-
T Consensus 598 pnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~---I~-----t--riga~d~i~~g 666 (854)
T PRK05399 598 PNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDR---IF-----T--RIGASDDLASG 666 (854)
T ss_pred ecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCe---ee-----e--ccCcccccccC
Confidence 4444444 456799999999999999999986442 1221122222111 10 0 01100 00122
Q ss_pred CCcchhHHHHHHHHHhh--CCCEEEEcCC---CcHHHH-----HHHHHHHHc-CcEEEEEEcCcchhHHhhh
Q 017797 183 PEPSLQHKVMIEAVENH--MPEVIIVDEI---GTEAEA-----HACRSIAER-GVMLIGTAHGEWLENIIKN 243 (365)
Q Consensus 183 ~S~g~~~r~~la~al~~--~P~vlilDEp---~~~~d~-----~~i~~~~~~-G~tVi~t~H~~~~~~~~~d 243 (365)
.|.-+.....++.++.. ++.++|+||| |+..|- ..+..+.+. |.+++++||..+.. .+++
T Consensus 667 ~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~-~l~~ 737 (854)
T PRK05399 667 RSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELT-ELEE 737 (854)
T ss_pred cccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHH-HHhh
Confidence 35556666677777766 8999999999 666662 345556666 58999999996644 3443
No 460
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.58 E-value=1.9e-07 Score=85.22 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=37.8
Q ss_pred cCCCcchhHHHHHHHHHh----hCCCEEEEcCCCcHHHHHHH----HHHHH--cCcEEEEEEcCcchhH
Q 017797 181 QVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHAC----RSIAE--RGVMLIGTAHGEWLEN 239 (365)
Q Consensus 181 ~~~S~g~~~r~~la~al~----~~P~vlilDEp~~~~d~~~i----~~~~~--~G~tVi~t~H~~~~~~ 239 (365)
..+|+|++..++++..++ ...+++++|||.+.+|.... ..+.+ ....+|+|||......
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~ 203 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFE 203 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 367999999988876553 35689999999999995322 22222 2489999999987554
No 461
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.55 E-value=3.7e-07 Score=75.97 Aligned_cols=112 Identities=24% Similarity=0.397 Sum_probs=66.0
Q ss_pred chhhhhcccC--CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhH
Q 017797 112 IDMVYDLLHY--GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQH 189 (365)
Q Consensus 112 ~~~l~~~l~~--g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~ 189 (365)
+..+...+.. +..+.|+||+|+||||+++.++..+... +..+.+++....... .......... .+
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~~~------~~~~~~~~~~------~~ 73 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLLEG------LVVAELFGHF------LV 73 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhhhh------hHHHHHhhhh------hH
Confidence 3344444443 7789999999999999999999988643 455665543221110 0000000000 23
Q ss_pred HHHHHHHHhhCCCEEEEcCCCcH--HHH----HHHHHHHH-----cCcEEEEEEcCcc
Q 017797 190 KVMIEAVENHMPEVIIVDEIGTE--AEA----HACRSIAE-----RGVMLIGTAHGEW 236 (365)
Q Consensus 190 r~~la~al~~~P~vlilDEp~~~--~d~----~~i~~~~~-----~G~tVi~t~H~~~ 236 (365)
..........+|.+|++||.-.. ... ..+..... .+..+|++++...
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 33445566678999999999753 122 22333322 4678888887665
No 462
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.52 E-value=2e-07 Score=93.18 Aligned_cols=137 Identities=15% Similarity=0.142 Sum_probs=87.3
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC-CcccC-------CCCCchhhhhhhhhccCC
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-NEIGG-------DGDIPHSAIGTARRMQVP 183 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~-~ei~~-------~~~~~~~~~~~~~~~~~~ 183 (365)
++.+ +.+.+|+.++|+|++|+|||||+++|++...++. ..+..++++ .+... ..++.+..+ .......
T Consensus 147 ID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~-gvI~~iGerg~ev~e~~~~~l~~~gl~~tvv--v~~tsd~ 222 (432)
T PRK06793 147 IDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADI-NVISLVGERGREVKDFIRKELGEEGMRKSVV--VVATSDE 222 (432)
T ss_pred Eecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCe-EEEEeCCCCcccHHHHHHHHhhhcccceeEE--EEECCCC
Confidence 4553 6788999999999999999999999999998763 345555544 22210 001111000 1112334
Q ss_pred CcchhHHHHHHHHHh-------hCCCEEEEcCCCcHHHHHH-HHHH----HHcCcEEEEEEcCcchhHHhhhHHHHHHHc
Q 017797 184 EPSLQHKVMIEAVEN-------HMPEVIIVDEIGTEAEAHA-CRSI----AERGVMLIGTAHGEWLENIIKNPILSDLIG 251 (365)
Q Consensus 184 S~g~~~r~~la~al~-------~~P~vlilDEp~~~~d~~~-i~~~----~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~ 251 (365)
|.+++++...+++.. .+|-+|++|+||...++.. +..+ -..|-+..+.+|- ..++.+.. ..+
T Consensus 223 s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~~~~s~l----~~L~ERag--~~~ 296 (432)
T PRK06793 223 SHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYM----KKLLERSG--KTQ 296 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeeeeeeccc----hhHHHHhc--cCC
Confidence 778999988888776 6899999999999888632 2111 1246677666663 34455555 346
Q ss_pred CcEEEEe
Q 017797 252 GVDTVTL 258 (365)
Q Consensus 252 ~g~iv~~ 258 (365)
+|.+.+.
T Consensus 297 ~GSiT~~ 303 (432)
T PRK06793 297 KGSITGI 303 (432)
T ss_pred CcceEEE
Confidence 7766544
No 463
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.51 E-value=8.4e-08 Score=87.07 Aligned_cols=55 Identities=11% Similarity=0.210 Sum_probs=40.2
Q ss_pred CcchhHHHHHHHHHhhCC---CEEEEcCCCcHHHHHHHHHH-------HHcCcEEEEEEcCcchh
Q 017797 184 EPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHACRSI-------AERGVMLIGTAHGEWLE 238 (365)
Q Consensus 184 S~g~~~r~~la~al~~~P---~vlilDEp~~~~d~~~i~~~-------~~~G~tVi~t~H~~~~~ 238 (365)
|.|+++.+.+...+...+ .++++|||-..+.+.+.+.+ ...+..||+|||.....
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 889999877777777665 89999999998886443332 23478999999997653
No 464
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.50 E-value=9.4e-07 Score=77.98 Aligned_cols=124 Identities=16% Similarity=0.188 Sum_probs=71.1
Q ss_pred chhhhhccc-CCcEEEEEcCCCCcHHHHHHHHHhccccC--CCCe-EE-EEcCC-CcccC------CCCCchh-------
Q 017797 112 IDMVYDLLH-YGKSILFVGRPGVGKTTVMREIARVLSDE--FQKR-VV-IVDTS-NEIGG------DGDIPHS------- 172 (365)
Q Consensus 112 ~~~l~~~l~-~g~~v~iiGpnGsGKTTllr~l~gll~~~--~~~~-i~-~i~~~-~ei~~------~~~~~~~------- 172 (365)
...+.+.++ +..++.|+|.||+||||||-+|+-...-+ .+.+ .. .++.. ..+.. ....+..
T Consensus 26 ~r~l~~~LeF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs 105 (233)
T COG3910 26 FRHLEERLEFRAPITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAES 105 (233)
T ss_pred HHhhhhhccccCceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhH
Confidence 455554444 34699999999999999999998665322 1221 10 01100 00000 0000000
Q ss_pred ---------hhhh-----hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEE
Q 017797 173 ---------AIGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGT 231 (365)
Q Consensus 173 ---------~~~~-----~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t 231 (365)
.... .+.+.-.|.|+..-..+.. ...+--+.+||||-+++.+ ..+..+++.|..+|+.
T Consensus 106 ~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~-rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiA 184 (233)
T COG3910 106 FYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHN-RFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIA 184 (233)
T ss_pred HHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHH-HhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 0000 0112234778876543333 4456779999999887653 3466778899999999
Q ss_pred EcCcc
Q 017797 232 AHGEW 236 (365)
Q Consensus 232 ~H~~~ 236 (365)
||..-
T Consensus 185 THSPi 189 (233)
T COG3910 185 THSPI 189 (233)
T ss_pred ecChh
Confidence 99864
No 465
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.49 E-value=2.2e-07 Score=91.69 Aligned_cols=190 Identities=23% Similarity=0.332 Sum_probs=98.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCch--hhhhh-hhhccCCCcchhHHHHHHH
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPH--SAIGT-ARRMQVPEPSLQHKVMIEA 195 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~--~~~~~-~~~~~~~S~g~~~r~~la~ 195 (365)
+.+|.+++|.|+||+|||||+..++..+... +.++.|+........ +.. ..++. .....+.+.. .....+..
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EEs~~q---i~~Ra~rlg~~~~~l~l~~e~-~le~I~~~ 153 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEESPEQ---IKLRADRLGISTENLYLLAET-NLEDILAS 153 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCcCHHH---HHHHHHHcCCCcccEEEEccC-cHHHHHHH
Confidence 6678999999999999999999999887654 567888754221100 000 00000 0011111111 11223344
Q ss_pred HHhhCCCEEEEcCCCcHH------------HH----HHHHH-HHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEe
Q 017797 196 VENHMPEVIIVDEIGTEA------------EA----HACRS-IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (365)
Q Consensus 196 al~~~P~vlilDEp~~~~------------d~----~~i~~-~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~ 258 (365)
+...+|+++++|++..-. .. ..+.. +.+.|+++|++.|-.........+.+.++.+ +-+...
T Consensus 154 i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD-~Vi~le 232 (372)
T cd01121 154 IEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVD-TVLYFE 232 (372)
T ss_pred HHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhce-EEEEEE
Confidence 455799999999984321 11 12333 4567999999999654322111223333322 233333
Q ss_pred cCHHHHHHhchHHHHHhhCCCchhhhHHhhhCCeee---------ec----CchhHHHHHHcCCCce-EEE
Q 017797 259 GDEEARARRCQKSILERKAPPTFYFLIEMRERHYWV---------TH----KTEKSVDMLLRGKTPL-VEV 315 (365)
Q Consensus 259 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~----~~~~~~~~~~~g~~~~-~~~ 315 (365)
++.....+ ..+.++.|+++......+++...|... .. ..+.++.+.++|.++. +++
T Consensus 233 ~~~~~~~R-~Lri~KnR~g~~~ei~~F~i~~~Gl~~v~~ps~~fl~~~~~~~~g~~~~~~~eg~r~~~~e~ 302 (372)
T cd01121 233 GDRHSEYR-ILRSVKNRFGSTNELGVFEMRENGLREVSNPSELFLSEREEDVPGSAVTVVMEGSRPLLVEV 302 (372)
T ss_pred cCCCCcEE-EEEEEeCCCCCCCCEEEEEECCCCeEEccChhhheecCCCCCCCccEEEeeccCCcceeeEe
Confidence 43322111 223445566654433445556665332 11 1233445566777775 455
No 466
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.8e-07 Score=87.79 Aligned_cols=185 Identities=23% Similarity=0.328 Sum_probs=119.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccC-------CCcchhHHH
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-------PEPSLQHKV 191 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~-------~S~g~~~r~ 191 (365)
+-+|..++|-|.||.||||||--++-.+... +++.|+...... ++....+.|++. +.. ..-..
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~--~~vLYVsGEES~-------~QiklRA~RL~~~~~~l~l~aE-t~~e~ 159 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKR--GKVLYVSGEESL-------QQIKLRADRLGLPTNNLYLLAE-TNLED 159 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhc--CcEEEEeCCcCH-------HHHHHHHHHhCCCccceEEehh-cCHHH
Confidence 4578899999999999999988877777654 388888543321 111112222222 111 12233
Q ss_pred HHHHHHhhCCCEEEEcCCCcH----HH-------------HHHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcE
Q 017797 192 MIEAVENHMPEVIIVDEIGTE----AE-------------AHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 254 (365)
Q Consensus 192 ~la~al~~~P~vlilDEp~~~----~d-------------~~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~ 254 (365)
.++.+-..+|+++|+|-+-.- ++ .++++.++.+|++++++.|-..+-..-.-+++.|+.+ .-
T Consensus 160 I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG~IAGPrvLEHmVD-tV 238 (456)
T COG1066 160 IIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEGAIAGPRVLEHMVD-TV 238 (456)
T ss_pred HHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEcccccccCchheeeeee-EE
Confidence 455566689999999998541 11 2445555677999999999888776556667776655 23
Q ss_pred EEEecCHHHHHHhchHHHHHhhCCCchhhhHHhhhCCeeeecC-------------chhHHHHHHcCCCce-EEE
Q 017797 255 TVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTHK-------------TEKSVDMLLRGKTPL-VEV 315 (365)
Q Consensus 255 iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~g~~~~-~~~ 315 (365)
+.+.|+...-++ ..+.+++|+++......+++...|.....+ .+.++.+.++|.++. +++
T Consensus 239 lyFEGd~~~~~R-iLR~vKNRFG~t~EiGvFeM~~~GL~eV~npS~lFL~er~~~~~GS~v~~~~EGtRpllvEv 312 (456)
T COG1066 239 LYFEGDRHSRYR-ILRSVKNRFGATNELGVFEMTENGLREVSNPSALFLSERGEQTPGSAVVVVMEGTRPLLVEI 312 (456)
T ss_pred EEEeccCCCcee-eeehhcccCCcccceeEEEEecCCeeEecCcHHhHhhcCCCCCCCcEEEEEEecccceEEEe
Confidence 456677665554 567888999988877778888877432222 133445566777775 355
No 467
>PRK08181 transposase; Validated
Probab=98.46 E-value=4e-07 Score=85.94 Aligned_cols=131 Identities=21% Similarity=0.281 Sum_probs=75.7
Q ss_pred hcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHH
Q 017797 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 196 (365)
Q Consensus 117 ~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~a 196 (365)
..++.++.+.|+||+|+|||.|+.+|+...... +..+.|+....-+ .. +... . ...... + . .-
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-g~~v~f~~~~~L~------~~--l~~a-~---~~~~~~-~-~--l~ 163 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN-GWRVLFTRTTDLV------QK--LQVA-R---RELQLE-S-A--IA 163 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc-CCceeeeeHHHHH------HH--HHHH-H---hCCcHH-H-H--HH
Confidence 346788899999999999999999999876543 5667666532111 00 0000 0 001111 1 1 12
Q ss_pred HhhCCCEEEEcCCCcH----HH----HHHHHHHHHcCcEEEEEE-cCcc-hhHH-----hhhHHHHHHHcCcEEEEecCH
Q 017797 197 ENHMPEVIIVDEIGTE----AE----AHACRSIAERGVMLIGTA-HGEW-LENI-----IKNPILSDLIGGVDTVTLGDE 261 (365)
Q Consensus 197 l~~~P~vlilDEp~~~----~d----~~~i~~~~~~G~tVi~t~-H~~~-~~~~-----~~d~i~~~ll~~g~iv~~g~~ 261 (365)
...++++||+||+... .. .+++....+++ .+|+|| ...+ +... +++.++..|++++.++.....
T Consensus 164 ~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~ 242 (269)
T PRK08181 164 KLDKFDLLILDDLAYVTKDQAETSVLFELISARYERR-SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVE 242 (269)
T ss_pred HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCC-CEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCc
Confidence 3468999999999642 22 23344334554 455555 4433 2222 345566668888888876555
Q ss_pred HHHH
Q 017797 262 EARA 265 (365)
Q Consensus 262 ~~~~ 265 (365)
+.+.
T Consensus 243 s~R~ 246 (269)
T PRK08181 243 SYRR 246 (269)
T ss_pred cchh
Confidence 5444
No 468
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.44 E-value=3.2e-07 Score=85.70 Aligned_cols=132 Identities=16% Similarity=0.182 Sum_probs=80.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-e-EEE-EcCC-Ccc------------cCCCCCc-hhhhhh-----
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-R-VVI-VDTS-NEI------------GGDGDIP-HSAIGT----- 176 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-~-i~~-i~~~-~ei------------~~~~~~~-~~~~~~----- 176 (365)
+.+|+.++|+||+|+||||+++.|++.+...... . +++ +.++ .+. ....+.+ ......
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999999988764111 2 223 2332 111 0000001 000000
Q ss_pred --h-----------------------------hhccCCCcch--------hHHHHHHHHHhhCCCEEEEcCCCcHHHH--
Q 017797 177 --A-----------------------------RRMQVPEPSL--------QHKVMIEAVENHMPEVIIVDEIGTEAEA-- 215 (365)
Q Consensus 177 --~-----------------------------~~~~~~S~g~--------~~r~~la~al~~~P~vlilDEp~~~~d~-- 215 (365)
. ..-..+|+|+ +|++.+|+++..++.+.++ +|...|.
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~ 170 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGS 170 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCC
Confidence 0 0011237787 8888888887778888888 7776551
Q ss_pred --H-H-HHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEE
Q 017797 216 --H-A-CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 255 (365)
Q Consensus 216 --~-~-i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~i 255 (365)
+ . +..+...+.+.|+.+|...... ..+.+. +++.|.+
T Consensus 171 ~~~~~i~~~~~~~~~~~ivls~~la~~~-~~paI~--vl~s~sr 211 (249)
T cd01128 171 RMDDVIFEEFKGTGNMELVLDRRLAERR-IFPAID--ILKSGTR 211 (249)
T ss_pred cccchHHHHHhcCCCcEEEEchHHhhCC-CCCeEE--EcCCCCc
Confidence 1 2 3344445678888888876443 456666 7777765
No 469
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.41 E-value=1.3e-06 Score=88.56 Aligned_cols=45 Identities=29% Similarity=0.389 Sum_probs=35.6
Q ss_pred hhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-CeEEEEcCC
Q 017797 116 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-KRVVIVDTS 160 (365)
Q Consensus 116 ~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-~~i~~i~~~ 160 (365)
+..+..|++++|+||||+||||++..|++.+....+ .+|.++...
T Consensus 250 ~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~D 295 (484)
T PRK06995 250 DALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTD 295 (484)
T ss_pred cccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 344567899999999999999999999998865434 467777643
No 470
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.38 E-value=7.2e-07 Score=81.12 Aligned_cols=31 Identities=6% Similarity=0.104 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHhhCCCEEEEcCCC-----cHHHHHH
Q 017797 187 LQHKVMIEAVENHMPEVIIVDEIG-----TEAEAHA 217 (365)
Q Consensus 187 ~~~r~~la~al~~~P~vlilDEp~-----~~~d~~~ 217 (365)
++++..+++++.++|+++++|||+ +++|+..
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~ 192 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPEL 192 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHH
Confidence 677789999999999999999999 9999643
No 471
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.37 E-value=5.6e-07 Score=91.12 Aligned_cols=114 Identities=22% Similarity=0.325 Sum_probs=67.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCch--hhhhh-hhhccCCCcchhHHHHHHH
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPH--SAIGT-ARRMQVPEPSLQHKVMIEA 195 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~--~~~~~-~~~~~~~S~g~~~r~~la~ 195 (365)
+.+|++++|.|+||+|||||+..++...... +.++.|+........ +.. ..++. .....+..... ....+..
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EEs~~q---i~~ra~rlg~~~~~l~~~~e~~-~~~I~~~ 165 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEESLQQ---IKMRAIRLGLPEPNLYVLSETN-WEQICAN 165 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcCCHHH---HHHHHHHcCCChHHeEEcCCCC-HHHHHHH
Confidence 6789999999999999999999998877654 567878754221100 000 00000 01111111111 1222333
Q ss_pred HHhhCCCEEEEcCCCcHH------------HH----HHHHH-HHHcCcEEEEEEcCcch
Q 017797 196 VENHMPEVIIVDEIGTEA------------EA----HACRS-IAERGVMLIGTAHGEWL 237 (365)
Q Consensus 196 al~~~P~vlilDEp~~~~------------d~----~~i~~-~~~~G~tVi~t~H~~~~ 237 (365)
+-..+|+++++|.+..-. +. ..+.. +.+.|+|+++|+|....
T Consensus 166 i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtke 224 (454)
T TIGR00416 166 IEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKE 224 (454)
T ss_pred HHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccC
Confidence 445689999999885421 11 12333 45679999999997653
No 472
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.37 E-value=2.4e-07 Score=102.94 Aligned_cols=72 Identities=14% Similarity=0.031 Sum_probs=61.8
Q ss_pred hhccCCCcchhHHHHHHHHHhh----------CCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHH
Q 017797 178 RRMQVPEPSLQHKVMIEAVENH----------MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENI 240 (365)
Q Consensus 178 ~~~~~~S~g~~~r~~la~al~~----------~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~ 240 (365)
+.+..+|+|+++++.++++|.. +|++||+|||++++|. +++..+...|.+|+++||..++...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~ 1025 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRER 1025 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHh
Confidence 3467899999999999999986 7999999999999985 4556666779999999999999999
Q ss_pred hhhHHHHHHHc
Q 017797 241 IKNPILSDLIG 251 (365)
Q Consensus 241 ~~d~i~~~ll~ 251 (365)
+++++. ++.
T Consensus 1026 ~~~~i~--v~~ 1034 (1042)
T TIGR00618 1026 IPHRIL--VKK 1034 (1042)
T ss_pred hCCEEE--EEE
Confidence 998887 653
No 473
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.36 E-value=3e-06 Score=78.61 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=57.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc--------cCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHH
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLS--------DEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~--------~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la 194 (365)
.+++|+|||.+||||+||.++-..- |.....+...+ .+...-...+ . ...-.|.-+..-..++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d---~I~t~~~~~d-~-----~~~~~S~F~~E~~~~~ 114 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFD---RIFTRIGDDD-S-----IESGLSTFMAEMKRLS 114 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--S---EEEEEES----S-----STTSSSHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeeccccccccc---EEEeeccccc-c-----cccccccHHHhHHHHH
Confidence 5899999999999999999875441 22111111111 1100000000 0 0111233233333344
Q ss_pred HHH--hhCCCEEEEcCCCcH---HH-----HHHHHHHHH-cCcEEEEEEcCcchhHH
Q 017797 195 AVE--NHMPEVIIVDEIGTE---AE-----AHACRSIAE-RGVMLIGTAHGEWLENI 240 (365)
Q Consensus 195 ~al--~~~P~vlilDEp~~~---~d-----~~~i~~~~~-~G~tVi~t~H~~~~~~~ 240 (365)
.++ ..+..++++||++.+ .| ...+..+.+ .+..+|++||..+..+.
T Consensus 115 ~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~ 171 (235)
T PF00488_consen 115 SILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAEL 171 (235)
T ss_dssp HHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGH
T ss_pred hhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHH
Confidence 444 346779999999763 33 345666777 58999999999986543
No 474
>PRK04296 thymidine kinase; Provisional
Probab=98.36 E-value=3e-06 Score=75.96 Aligned_cols=113 Identities=14% Similarity=0.226 Sum_probs=61.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC--CCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhh
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--SNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~--~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
|.+++++||+|+||||++..++...... +.++.++.. ...........+..+. .......+...-.+ .+.. ...
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~-g~~v~i~k~~~d~~~~~~~i~~~lg~~-~~~~~~~~~~~~~~-~~~~-~~~ 77 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER-GMKVLVFKPAIDDRYGEGKVVSRIGLS-REAIPVSSDTDIFE-LIEE-EGE 77 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc-CCeEEEEeccccccccCCcEecCCCCc-ccceEeCChHHHHH-HHHh-hCC
Confidence 6789999999999999988777665433 667776622 1111100000000000 00000111111000 0111 234
Q ss_pred CCCEEEEcCCCc--HHHH-HHHHHHHHcCcEEEEEEcCcchh
Q 017797 200 MPEVIIVDEIGT--EAEA-HACRSIAERGVMLIGTAHGEWLE 238 (365)
Q Consensus 200 ~P~vlilDEp~~--~~d~-~~i~~~~~~G~tVi~t~H~~~~~ 238 (365)
++++|++||..- ..++ ++++.+++.|++|+++.++.++.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~ 119 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDFR 119 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcccc
Confidence 789999999954 2223 45666688999999999986643
No 475
>PRK06526 transposase; Provisional
Probab=98.35 E-value=8e-07 Score=83.34 Aligned_cols=128 Identities=19% Similarity=0.297 Sum_probs=70.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHh
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~ 198 (365)
++.++.++|+||+|+|||+|+.+|+...... +.++.+.... ++ +. .+.. . .+.+.-.+ .+. -.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~-g~~v~f~t~~-~l-----~~--~l~~---~--~~~~~~~~-~l~--~l 157 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQA-GHRVLFATAA-QW-----VA--RLAA---A--HHAGRLQA-ELV--KL 157 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHC-CCchhhhhHH-HH-----HH--HHHH---H--HhcCcHHH-HHH--Hh
Confidence 5678899999999999999999998766433 4455443211 11 00 0000 0 01111111 111 23
Q ss_pred hCCCEEEEcCCCcH----HHHH----HHHHHHHcCcEEEEEEcCc-c-hhHH-----hhhHHHHHHHcCcEEEEecCHHH
Q 017797 199 HMPEVIIVDEIGTE----AEAH----ACRSIAERGVMLIGTAHGE-W-LENI-----IKNPILSDLIGGVDTVTLGDEEA 263 (365)
Q Consensus 199 ~~P~vlilDEp~~~----~d~~----~i~~~~~~G~tVi~t~H~~-~-~~~~-----~~d~i~~~ll~~g~iv~~g~~~~ 263 (365)
.++++||+||+... ...+ .+....+.+ .+|+|++.. + +.+. +++.++..|++++.++.....+.
T Consensus 158 ~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~ 236 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSY 236 (254)
T ss_pred ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCc
Confidence 57999999999742 2222 333333444 466666542 2 3333 34455666888888887655544
Q ss_pred H
Q 017797 264 R 264 (365)
Q Consensus 264 ~ 264 (365)
+
T Consensus 237 R 237 (254)
T PRK06526 237 R 237 (254)
T ss_pred c
Confidence 3
No 476
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.34 E-value=1.7e-06 Score=76.19 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=29.0
Q ss_pred HHHHHhhCCCEEEEcCCCcHHH-----HHHHHHHHHcCcEEEEEEcCcc
Q 017797 193 IEAVENHMPEVIIVDEIGTEAE-----AHACRSIAERGVMLIGTAHGEW 236 (365)
Q Consensus 193 la~al~~~P~vlilDEp~~~~d-----~~~i~~~~~~G~tVi~t~H~~~ 236 (365)
+..++ .+++++++||++-.+- .+++..+.+.+..+|+|.|...
T Consensus 89 L~~~~-~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~ 136 (168)
T PF03266_consen 89 LRNAL-SSSDLIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKRS 136 (168)
T ss_dssp CHHHH-HCCHEEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS-
T ss_pred HHhhc-CCCCEEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 34444 7999999999988544 4678888888899999999873
No 477
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.32 E-value=3.1e-07 Score=74.42 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=30.2
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHH
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIA 143 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~ 143 (365)
++++++.+.+|+.++|+||+|||||||++++.
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 77888999999999999999999999999986
No 478
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.27 E-value=1.2e-06 Score=86.14 Aligned_cols=48 Identities=29% Similarity=0.431 Sum_probs=36.7
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-CeEEEEcC
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-KRVVIVDT 159 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-~~i~~i~~ 159 (365)
++..+..+..|++++|+||||+|||||+..|+.......+ .+|.++..
T Consensus 127 ~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~ 175 (374)
T PRK14722 127 LDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT 175 (374)
T ss_pred hcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 4445566888999999999999999999999987643323 46766653
No 479
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.25 E-value=7.4e-07 Score=89.37 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=37.8
Q ss_pred CcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE
Q 017797 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 156 (365)
Q Consensus 110 ~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~ 156 (365)
.+++++++.+++|++++|+||+||||||||| +++..|+.++.|.+
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~l 64 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFL 64 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEE
Confidence 3478889999999999999999999999999 67777775554544
No 480
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.23 E-value=5.9e-06 Score=83.64 Aligned_cols=113 Identities=20% Similarity=0.380 Sum_probs=66.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCch--hhhhh-hhhccCCCcchhHHHHHHH
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPH--SAIGT-ARRMQVPEPSLQHKVMIEA 195 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~--~~~~~-~~~~~~~S~g~~~r~~la~ 195 (365)
+.+|.+++|.|+||+|||||+..++...... +.++.|+........ +.. ..++. ...+.+.+.. .....+..
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~q---i~~ra~rlg~~~~~l~~~~e~-~l~~i~~~ 151 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESASQ---IKLRAERLGLPSDNLYLLAET-NLEAILAT 151 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHHH---HHHHHHHcCCChhcEEEeCCC-CHHHHHHH
Confidence 6678999999999999999999999877533 577888764322100 000 00000 0011111111 11223333
Q ss_pred HHhhCCCEEEEcCCCcHH------------HH----HHHHH-HHHcCcEEEEEEcCcc
Q 017797 196 VENHMPEVIIVDEIGTEA------------EA----HACRS-IAERGVMLIGTAHGEW 236 (365)
Q Consensus 196 al~~~P~vlilDEp~~~~------------d~----~~i~~-~~~~G~tVi~t~H~~~ 236 (365)
+...+|+++|+|++..-. .. ..+.. +.+.|++++++.|-..
T Consensus 152 i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk 209 (446)
T PRK11823 152 IEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTK 209 (446)
T ss_pred HHhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccC
Confidence 445689999999986421 11 12333 4567999999999654
No 481
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.20 E-value=1.6e-06 Score=80.47 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc-----------ccCCCCeEEEEc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVL-----------SDEFQKRVVIVD 158 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll-----------~~~~~~~i~~i~ 158 (365)
|.+.+|+||+|+|||||+-.++--+ .+..+.+|.|+.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 5678999999999999999887432 223356788875
No 482
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.20 E-value=5.6e-06 Score=89.76 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=34.3
Q ss_pred hhCCCEEEEcCCCcHH-HH-------HHHHHHHHcCcEEEEEEcCcchhH
Q 017797 198 NHMPEVIIVDEIGTEA-EA-------HACRSIAERGVMLIGTAHGEWLEN 239 (365)
Q Consensus 198 ~~~P~vlilDEp~~~~-d~-------~~i~~~~~~G~tVi~t~H~~~~~~ 239 (365)
..+|.++++|||...+ |. +.++.+++.|.+++++||+.+.+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~ 699 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAE 699 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh
Confidence 5799999999999988 43 455666778999999999988664
No 483
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.19 E-value=7.7e-07 Score=92.69 Aligned_cols=69 Identities=10% Similarity=0.087 Sum_probs=56.6
Q ss_pred cCCCcchhHHHHHHHHHhhC----CCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHH
Q 017797 181 QVPEPSLQHKVMIEAVENHM----PEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (365)
Q Consensus 181 ~~~S~g~~~r~~la~al~~~----P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~l 249 (365)
..+|+|+++|++++++++.. |++||+|||++++|. +.+..+. .|++||++||....+. .||+++ +
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~~~~vi~iTH~~~~~~-~ad~~~--~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-ERHQVLCVTHLPQVAA-HADAHF--K 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEEChHHHHH-hcCeEE--E
Confidence 46799999999999999885 699999999999885 3344444 4899999999998774 799988 6
Q ss_pred HcCc
Q 017797 250 IGGV 253 (365)
Q Consensus 250 l~~g 253 (365)
+.++
T Consensus 515 l~k~ 518 (563)
T TIGR00634 515 VEKE 518 (563)
T ss_pred EEEc
Confidence 6653
No 484
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.19 E-value=3.5e-06 Score=85.17 Aligned_cols=124 Identities=14% Similarity=0.231 Sum_probs=75.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccC-CCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCC
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 202 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~~-~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~ 202 (365)
.+.|.||+|+|||+|+++++..+... .+.++.|+.... + ....... .. .+.. ..+......+|+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~-f------~~~~~~~---~~--~~~~---~~f~~~~~~~~d 196 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK-F------LNDLVDS---MK--EGKL---NEFREKYRKKVD 196 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH-H------HHHHHHH---Hh--cccH---HHHHHHHHhcCC
Confidence 58999999999999999999876432 245677765321 1 0000000 00 0000 012222335799
Q ss_pred EEEEcCCCcHHH--------HHHHHHHHHcCcEEEEEE-cCcchhHHhhhHHHHHHHcCcEEEEecCHHH
Q 017797 203 VIIVDEIGTEAE--------AHACRSIAERGVMLIGTA-HGEWLENIIKNPILSDLIGGVDTVTLGDEEA 263 (365)
Q Consensus 203 vlilDEp~~~~d--------~~~i~~~~~~G~tVi~t~-H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~ 263 (365)
+|++|||....+ ...+..+.+.|..+|+++ |.......+.+++...+ ..|-++....|+.
T Consensus 197 vLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~-~~gl~v~i~~pd~ 265 (440)
T PRK14088 197 VLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRF-QMGLVAKLEPPDE 265 (440)
T ss_pred EEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHH-hcCceEeeCCCCH
Confidence 999999975321 244556677787777766 77777767777777644 5566766666654
No 485
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.18 E-value=2.5e-06 Score=75.70 Aligned_cols=100 Identities=18% Similarity=0.304 Sum_probs=54.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHh
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~ 198 (365)
++.++.+.|.||+|+|||.|..+|+..+.. .+..+.|+..+.-+. .+ +... +.+...+ .+ -..
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~~~~L~~--------~l---~~~~--~~~~~~~-~~--~~l 106 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFITASDLLD--------EL---KQSR--SDGSYEE-LL--KRL 106 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEHHHHHH--------HH---HCCH--CCTTHCH-HH--HHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEeecCceec--------cc---cccc--cccchhh-hc--Ccc
Confidence 567889999999999999999999976654 367777775432110 00 0000 1111111 12 224
Q ss_pred hCCCEEEEcCCCcHHH--------HHHHHHHHHcCcEEEEEEcCc
Q 017797 199 HMPEVIIVDEIGTEAE--------AHACRSIAERGVMLIGTAHGE 235 (365)
Q Consensus 199 ~~P~vlilDEp~~~~d--------~~~i~~~~~~G~tVi~t~H~~ 235 (365)
.++|+||+||.+.... .+++..-.+...|||.|....
T Consensus 107 ~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~~ 151 (178)
T PF01695_consen 107 KRVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLSP 151 (178)
T ss_dssp HTSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-H
T ss_pred ccccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCch
Confidence 6899999999977321 234444445554555544544
No 486
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.17 E-value=6.4e-06 Score=82.93 Aligned_cols=146 Identities=17% Similarity=0.157 Sum_probs=83.5
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC-CcccCC-------CCCchhhhhhhhhccC
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-NEIGGD-------GDIPHSAIGTARRMQV 182 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~-~ei~~~-------~~~~~~~~~~~~~~~~ 182 (365)
.++.+ +.+.+|+.++|+|+||+|||||+++|+++..++. ..+..+..+ .++... ..+....+ .-....
T Consensus 153 ~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~-~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvv--v~~~~d 228 (440)
T TIGR01026 153 SIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADV-NVIALIGERGREVREFIEHDLGEEGLKRSVV--VVATSD 228 (440)
T ss_pred eeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCE-EEEEEEeecchHHHHHHHHHhcccccceEEE--EEECCC
Confidence 35666 7788999999999999999999999999987753 233333332 222110 00000000 000111
Q ss_pred CCcchhHHHHHHH-----HH-hhCCC-EEEEcCCCcHHH-------------------H-------HHHHHHHHcCc---
Q 017797 183 PEPSLQHKVMIEA-----VE-NHMPE-VIIVDEIGTEAE-------------------A-------HACRSIAERGV--- 226 (365)
Q Consensus 183 ~S~g~~~r~~la~-----al-~~~P~-vlilDEp~~~~d-------------------~-------~~i~~~~~~G~--- 226 (365)
.+..++.+....+ -+ -+.-+ +|++|-.|.-.+ + +++..+...|.
T Consensus 229 ~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSI 308 (440)
T TIGR01026 229 QSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSI 308 (440)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhccCCCCee
Confidence 2344454432221 11 12334 466777765222 1 23333444455
Q ss_pred ----EEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 227 ----MLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 227 ----tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
||++.+|+++ +-+++.+. .+.+|+++...+..+.
T Consensus 309 T~i~tVl~~~~d~~--dpi~d~~~--~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 309 TAFYTVLVEGDDMN--EPIADSVR--GILDGHIVLSRALAQR 346 (440)
T ss_pred eEEEEEEccCcCCC--cchhhhhc--cccceEEEEecchhhC
Confidence 7777778874 56888888 7788999998776654
No 487
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.16 E-value=2.5e-05 Score=75.96 Aligned_cols=125 Identities=21% Similarity=0.200 Sum_probs=75.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhC
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~ 200 (365)
.+..++|.||+|+|||+|+.+|+..+... +..|.|+....-+. . +.. .+. ......... .....+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~-g~~V~y~t~~~l~~------~--l~~-~~~---~~~~~~~~~--~~~l~~ 246 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR-GKSVIYRTADELIE------I--LRE-IRF---NNDKELEEV--YDLLIN 246 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEEHHHHHH------H--HHH-HHh---ccchhHHHH--HHHhcc
Confidence 45789999999999999999999987543 66777775422110 0 000 000 000011111 344568
Q ss_pred CCEEEEcCCCcH----HH----HHHHHHHHHcCcEEEEEE-cCcch-hHHhhhHHHHHHHcCcEEEEecC
Q 017797 201 PEVIIVDEIGTE----AE----AHACRSIAERGVMLIGTA-HGEWL-ENIIKNPILSDLIGGVDTVTLGD 260 (365)
Q Consensus 201 P~vlilDEp~~~----~d----~~~i~~~~~~G~tVi~t~-H~~~~-~~~~~d~i~~~ll~~g~iv~~g~ 260 (365)
+|+||+|+.+.. .. .+++....+.+..+|+|| ..... ...+.++++..|.++..++....
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G 316 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYG 316 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecC
Confidence 999999999653 11 234444455565555555 44443 34467888888888887776643
No 488
>PRK12377 putative replication protein; Provisional
Probab=98.13 E-value=9e-06 Score=75.92 Aligned_cols=122 Identities=14% Similarity=0.235 Sum_probs=70.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCC
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
...+.|.||+|+|||+|+.+|+..+... +..+.++..+.-+ .. +... . ..+....-. .-...++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~-g~~v~~i~~~~l~------~~--l~~~--~---~~~~~~~~~--l~~l~~~ 164 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK-GRSVIVVTVPDVM------SR--LHES--Y---DNGQSGEKF--LQELCKV 164 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEHHHHH------HH--HHHH--H---hccchHHHH--HHHhcCC
Confidence 4679999999999999999999988644 5566665432111 00 0000 0 011111111 1224799
Q ss_pred CEEEEcCCCcH----HHHHH----HHHHHHcCcEEEEEE-cCcc-hhHHhhhHHHHHHHcC-cEEEEec
Q 017797 202 EVIIVDEIGTE----AEAHA----CRSIAERGVMLIGTA-HGEW-LENIIKNPILSDLIGG-VDTVTLG 259 (365)
Q Consensus 202 ~vlilDEp~~~----~d~~~----i~~~~~~G~tVi~t~-H~~~-~~~~~~d~i~~~ll~~-g~iv~~g 259 (365)
|+|++||.... -..+. +..-.+....+|+|| ...+ +.+.+.++++..|.++ +..|...
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~~ri~dRl~~~~~~~v~~~ 233 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFN 233 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhhHHHHHHHhhCCCeEEEeC
Confidence 99999999653 12223 333334455555555 4433 4556788888778764 5655553
No 489
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.12 E-value=8.2e-06 Score=81.34 Aligned_cols=118 Identities=17% Similarity=0.265 Sum_probs=67.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhh
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
.++..++|.||||+||||+++++++..... ...+.. .++ .... ...+...-+-.+..|...
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~----fi~i~~-s~l------~~k~--------~ge~~~~lr~lf~~A~~~ 237 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTAT----FIRVVG-SEF------VQKY--------LGEGPRMVRDVFRLAREN 237 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCC----EEEEeh-HHH------HHHh--------cchhHHHHHHHHHHHHhc
Confidence 456789999999999999999999976532 222211 111 0000 111112234456677788
Q ss_pred CCCEEEEcCCCc----------HHHH-------HHHHHHH----HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcE---E
Q 017797 200 MPEVIIVDEIGT----------EAEA-------HACRSIA----ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD---T 255 (365)
Q Consensus 200 ~P~vlilDEp~~----------~~d~-------~~i~~~~----~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~---i 255 (365)
.|.+|++||+.. +.|. +.+..+. ..++.||++||..+..+ +. ++..|+ .
T Consensus 238 ~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LD----pA---llR~GRfd~~ 310 (398)
T PTZ00454 238 APSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD----PA---LLRPGRLDRK 310 (398)
T ss_pred CCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCC----HH---HcCCCcccEE
Confidence 999999999643 1121 1222221 23678999999876332 32 333343 4
Q ss_pred EEecCHHH
Q 017797 256 VTLGDEEA 263 (365)
Q Consensus 256 v~~g~~~~ 263 (365)
+...-|+.
T Consensus 311 I~~~~P~~ 318 (398)
T PTZ00454 311 IEFPLPDR 318 (398)
T ss_pred EEeCCcCH
Confidence 66666654
No 490
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.12 E-value=5.1e-06 Score=80.37 Aligned_cols=88 Identities=26% Similarity=0.341 Sum_probs=54.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhcc--C------CCcchhHHH
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQ--V------PEPSLQHKV 191 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~--~------~S~g~~~r~ 191 (365)
.+|++++|+|||||||||+++.|++.+.+. +++|..++....-.. .+.+... +..+.+ + ........-
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~Li~~D~~r~~--a~eql~~-~a~~~~i~~~~~~~~~dpa~~v~~ 187 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLLAAGDTFRAA--AIEQLQV-WGERVGVPVIAQKEGADPASVAFD 187 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEEEecCccchh--hHHHHHH-HHHHcCceEEEeCCCCCHHHHHHH
Confidence 357899999999999999999999999865 678887764321100 0001000 000111 0 011112223
Q ss_pred HHHHHHhhCCCEEEEcCCCc
Q 017797 192 MIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 192 ~la~al~~~P~vlilDEp~~ 211 (365)
.+..++..+-|++|+|=|..
T Consensus 188 ~l~~~~~~~~D~ViIDTaGr 207 (318)
T PRK10416 188 AIQAAKARGIDVLIIDTAGR 207 (318)
T ss_pred HHHHHHhCCCCEEEEeCCCC
Confidence 45566778899999999976
No 491
>PRK06893 DNA replication initiation factor; Validated
Probab=98.10 E-value=2.2e-05 Score=72.44 Aligned_cols=114 Identities=14% Similarity=0.134 Sum_probs=63.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCC
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 202 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~ 202 (365)
..+.|.||+|+|||+|+++++...... +..+.|++-...- . . ... .+ ....+++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~~~----------~--------~--~~~---~~--~~~~~~d 93 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSKSQ----------Y--------F--SPA---VL--ENLEQQD 93 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHHhh----------h--------h--hHH---HH--hhcccCC
Confidence 467899999999999999999876543 3455555431100 0 0 000 01 1134789
Q ss_pred EEEEcCCCcHH---H-----HHHHHHHHHcCcEEEEEEcCcchh--HHhhhHHHHHHHcCcEEEEecCHHH
Q 017797 203 VIIVDEIGTEA---E-----AHACRSIAERGVMLIGTAHGEWLE--NIIKNPILSDLIGGVDTVTLGDEEA 263 (365)
Q Consensus 203 vlilDEp~~~~---d-----~~~i~~~~~~G~tVi~t~H~~~~~--~~~~d~i~~~ll~~g~iv~~g~~~~ 263 (365)
+|++||+.... + ...+....+.|.++++++++.... ...-.++.. -+..|.++....++.
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~ 163 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTD 163 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCH
Confidence 99999997621 1 234555667777776655544211 111122332 334466666655554
No 492
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.08 E-value=1.4e-05 Score=74.47 Aligned_cols=122 Identities=17% Similarity=0.274 Sum_probs=69.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCC
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 202 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~ 202 (365)
..+.|.|++|+|||+|+.+|+..+... +..+.++.-..-+ . .+.. ... .......-.+ .. ..++|
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~-g~~v~~it~~~l~-------~-~l~~--~~~--~~~~~~~~~l-~~-l~~~d 164 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR-GKSVLIITVADIM-------S-AMKD--TFS--NSETSEEQLL-ND-LSNVD 164 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEHHHHH-------H-HHHH--HHh--hccccHHHHH-HH-hccCC
Confidence 478999999999999999999988654 5677766431111 0 0000 000 0011111112 22 34899
Q ss_pred EEEEcCCCcHHH--H--HHHHHH----HHcCcEEEEEE-cCcc-hhHHhhhHHHHHHH-cCcEEEEec
Q 017797 203 VIIVDEIGTEAE--A--HACRSI----AERGVMLIGTA-HGEW-LENIIKNPILSDLI-GGVDTVTLG 259 (365)
Q Consensus 203 vlilDEp~~~~d--~--~~i~~~----~~~G~tVi~t~-H~~~-~~~~~~d~i~~~ll-~~g~iv~~g 259 (365)
+|++||+..... + +.+..+ .+....+|+|| .... +...+.++++..|. +++..+.+.
T Consensus 165 lLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~ 232 (244)
T PRK07952 165 LLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFN 232 (244)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEEee
Confidence 999999976321 1 222222 23344455544 4433 45567888887774 777776654
No 493
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=98.08 E-value=1.4e-05 Score=86.72 Aligned_cols=109 Identities=16% Similarity=0.104 Sum_probs=63.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc--------ccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHH
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVL--------SDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMI 193 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll--------~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~l 193 (365)
..+++|+|||.+||||+||.++=.. -|....++.++|. +...-+-.+. -..-.|.-+.....+
T Consensus 592 ~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA~~a~i~~~D~---Iftrig~~d~------i~~g~STF~~Em~e~ 662 (840)
T TIGR01070 592 RRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAESAELPLFDR---IFTRIGASDD------LASGRSTFMVEMTEA 662 (840)
T ss_pred ccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccchheEeccccE---EEEecCcccc------hhcCcchHHHHHHHH
Confidence 4689999999999999999875332 1221122222211 0000000000 011234444445555
Q ss_pred HHHHh--hCCCEEEEcCCCc---HHHH-----HHHHHHHH-cCcEEEEEEcCcchhH
Q 017797 194 EAVEN--HMPEVIIVDEIGT---EAEA-----HACRSIAE-RGVMLIGTAHGEWLEN 239 (365)
Q Consensus 194 a~al~--~~P~vlilDEp~~---~~d~-----~~i~~~~~-~G~tVi~t~H~~~~~~ 239 (365)
+.+|. ..+.++++||++. ..|- ..+..+.+ .|..++++||..+...
T Consensus 663 a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~ 719 (840)
T TIGR01070 663 ANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTA 719 (840)
T ss_pred HHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHH
Confidence 66554 4789999999954 4442 23455566 6889999999987554
No 494
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.08 E-value=6.4e-06 Score=73.96 Aligned_cols=23 Identities=48% Similarity=0.553 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
+++|+||+|||||||+++|++++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999998
No 495
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.07 E-value=3.7e-06 Score=61.25 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=26.6
Q ss_pred cccC-CcEEEEEcCCCCcHHHHHHHHHhccccC
Q 017797 118 LLHY-GKSILFVGRPGVGKTTVMREIARVLSDE 149 (365)
Q Consensus 118 ~l~~-g~~v~iiGpnGsGKTTllr~l~gll~~~ 149 (365)
.+.+ |.+++|+|||||||||++.+|.-++-+.
T Consensus 18 ~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 18 DFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred eecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3443 5699999999999999999998887654
No 496
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.05 E-value=3.5e-05 Score=78.79 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=46.2
Q ss_pred eeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC
Q 017797 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK 152 (365)
Q Consensus 98 ~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~ 152 (365)
.+++..++...+ .+.++..+..|++++|+|||||||||+++.|.|+++|..+.
T Consensus 188 ~d~~~v~Gq~~~--~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~ 240 (506)
T PRK09862 188 HDLSDVIGQEQG--KRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE 240 (506)
T ss_pred cCeEEEECcHHH--HhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCc
Confidence 478888887766 88888889999999999999999999999999999887443
No 497
>PRK08116 hypothetical protein; Validated
Probab=98.05 E-value=5.2e-05 Score=71.68 Aligned_cols=128 Identities=20% Similarity=0.200 Sum_probs=72.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCC
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
+..+.|.|++|+|||.|+.+|+..+... +..+.++....-+ . .+.. .... +.... ...+.. ...++
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~~~~ll------~--~i~~--~~~~-~~~~~-~~~~~~-~l~~~ 179 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVNFPQLL------N--RIKS--TYKS-SGKED-ENEIIR-SLVNA 179 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHHHH------H--HHHH--HHhc-ccccc-HHHHHH-HhcCC
Confidence 3469999999999999999999988654 5667666532111 0 0000 0000 01111 111222 24578
Q ss_pred CEEEEcCCCcH--HH------HHHHHHHHHcCcEEEEEEc-Ccch-hHHhhhHHHHHHHcCcEEEEecCHHH
Q 017797 202 EVIIVDEIGTE--AE------AHACRSIAERGVMLIGTAH-GEWL-ENIIKNPILSDLIGGVDTVTLGDEEA 263 (365)
Q Consensus 202 ~vlilDEp~~~--~d------~~~i~~~~~~G~tVi~t~H-~~~~-~~~~~d~i~~~ll~~g~iv~~g~~~~ 263 (365)
++|++||.+.. -+ ..++....+.|..+|+||. .... ...+..+++..|++.+..|....++.
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 99999999542 11 1344444556766666664 4333 23356677777777777666544443
No 498
>PRK10869 recombination and repair protein; Provisional
Probab=98.05 E-value=2.5e-06 Score=88.56 Aligned_cols=68 Identities=9% Similarity=0.106 Sum_probs=54.8
Q ss_pred cCCCcchhHHHHHHHHHhh----CCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHH
Q 017797 181 QVPEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (365)
Q Consensus 181 ~~~S~g~~~r~~la~al~~----~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~l 249 (365)
..+|+|+++|+++|++++. +|+++|+|||++++|.. .+..+. .+++||++||....+ .+||+.+ .
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~-~~~qvi~iTH~~~~~-~~ad~~~--~ 504 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG-ESTQVMCVTHLPQVA-GCGHQHF--F 504 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEE--E
Confidence 3679999999999999997 58999999999998853 344443 468999999999866 6888877 5
Q ss_pred HcC
Q 017797 250 IGG 252 (365)
Q Consensus 250 l~~ 252 (365)
+.+
T Consensus 505 v~k 507 (553)
T PRK10869 505 VSK 507 (553)
T ss_pred Eec
Confidence 543
No 499
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.05 E-value=1e-05 Score=72.96 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=26.6
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.++|++++|+||+|||||||++.|++.++
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35799999999999999999999999875
No 500
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.05 E-value=4.2e-06 Score=93.05 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=52.5
Q ss_pred hhccCCCcchhHHHHHHHHHhh--------CCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHH
Q 017797 178 RRMQVPEPSLQHKVMIEAVENH--------MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENI 240 (365)
Q Consensus 178 ~~~~~~S~g~~~r~~la~al~~--------~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~ 240 (365)
+.+..+|+|++++++|+++|.. +|++||+|||++++|. +++..+...|.+|+++||...+.+.
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHh
Confidence 4467799999999999999996 8999999999999995 4566667789999999995554333
Done!