Query 017797
Match_columns 365
No_of_seqs 422 out of 4351
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 05:06:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rlf_A Maltose/maltodextrin im 100.0 8.2E-32 2.8E-36 263.4 12.0 171 97-271 6-228 (381)
2 3jvv_A Twitching mobility prot 100.0 2E-30 7E-35 252.4 21.0 224 16-252 4-245 (356)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 1E-31 3.6E-36 260.9 11.6 169 97-269 7-231 (359)
4 3tui_C Methionine import ATP-b 100.0 1.1E-31 3.7E-36 261.0 10.4 171 97-269 27-256 (366)
5 3gfo_A Cobalt import ATP-bindi 100.0 1.4E-31 4.9E-36 251.9 9.9 167 97-267 10-234 (275)
6 4g1u_C Hemin import ATP-bindin 100.0 3.9E-31 1.3E-35 247.9 10.7 166 97-266 14-237 (266)
7 2olj_A Amino acid ABC transpor 100.0 5.5E-31 1.9E-35 246.4 11.1 167 97-267 27-249 (263)
8 2yyz_A Sugar ABC transporter, 100.0 7.8E-31 2.7E-35 255.2 12.4 169 97-269 6-226 (359)
9 2it1_A 362AA long hypothetical 100.0 9.8E-31 3.3E-35 254.8 11.4 169 97-269 6-226 (362)
10 1vpl_A ABC transporter, ATP-bi 100.0 7.8E-31 2.7E-35 244.5 10.1 166 97-266 18-235 (256)
11 1z47_A CYSA, putative ABC-tran 100.0 7.6E-31 2.6E-35 254.8 10.3 169 97-269 17-238 (355)
12 1b0u_A Histidine permease; ABC 100.0 1.3E-30 4.5E-35 243.8 11.1 167 97-267 9-243 (262)
13 1v43_A Sugar-binding transport 100.0 1.5E-30 5E-35 254.4 11.3 169 97-269 14-234 (372)
14 1ji0_A ABC transporter; ATP bi 100.0 1.9E-30 6.5E-35 239.7 11.1 166 97-266 9-228 (240)
15 1g29_1 MALK, maltose transport 100.0 2.2E-30 7.5E-35 253.4 11.9 169 97-269 6-232 (372)
16 1oxx_K GLCV, glucose, ABC tran 100.0 1.5E-30 5.1E-35 253.0 10.3 169 97-269 6-233 (353)
17 2pcj_A ABC transporter, lipopr 100.0 1.4E-30 4.7E-35 238.2 7.6 159 97-260 7-222 (224)
18 1g6h_A High-affinity branched- 100.0 1.8E-30 6.1E-35 242.3 8.3 163 97-263 10-239 (257)
19 3d31_A Sulfate/molybdate ABC t 100.0 1.6E-30 5.4E-35 252.1 7.9 168 97-269 4-220 (348)
20 3tif_A Uncharacterized ABC tra 100.0 1.7E-30 5.7E-35 239.4 6.8 165 97-264 4-232 (235)
21 2nq2_C Hypothetical ABC transp 100.0 8.2E-30 2.8E-34 237.2 11.4 165 97-266 7-217 (253)
22 2onk_A Molybdate/tungstate ABC 100.0 7.6E-30 2.6E-34 235.6 8.8 163 97-267 4-217 (240)
23 2ff7_A Alpha-hemolysin translo 100.0 3.1E-29 1E-33 232.6 9.1 165 97-267 10-233 (247)
24 2ihy_A ABC transporter, ATP-bi 100.0 1.2E-29 4.1E-34 239.4 6.1 166 97-266 24-252 (279)
25 2yz2_A Putative ABC transporte 100.0 6.5E-29 2.2E-33 232.8 9.9 167 97-267 5-228 (266)
26 1mv5_A LMRA, multidrug resista 100.0 5.8E-29 2E-33 230.1 8.1 165 97-267 4-227 (243)
27 2ixe_A Antigen peptide transpo 100.0 5.6E-29 1.9E-33 233.9 7.7 166 97-267 19-246 (271)
28 2pze_A Cystic fibrosis transme 100.0 1.8E-28 6.3E-33 224.9 10.7 165 97-266 9-218 (229)
29 3nh6_A ATP-binding cassette SU 99.9 8.8E-29 3E-33 236.0 7.6 165 97-267 56-278 (306)
30 2cbz_A Multidrug resistance-as 99.9 3.7E-28 1.3E-32 224.0 11.3 165 97-266 6-217 (237)
31 2d2e_A SUFC protein; ABC-ATPas 99.9 6.8E-29 2.3E-33 230.6 6.4 162 97-263 6-230 (250)
32 2qi9_C Vitamin B12 import ATP- 99.9 2.3E-28 7.7E-33 227.0 8.5 161 97-266 7-222 (249)
33 2zu0_C Probable ATP-dependent 99.9 2.3E-28 7.8E-33 229.2 7.9 165 97-265 23-253 (267)
34 2ghi_A Transport protein; mult 99.9 4.6E-28 1.6E-32 226.3 8.0 165 97-266 20-242 (260)
35 3gd7_A Fusion complex of cysti 99.9 5.3E-28 1.8E-32 237.7 8.1 169 97-271 22-247 (390)
36 1sgw_A Putative ABC transporte 99.9 9.1E-28 3.1E-32 218.0 7.1 150 97-251 13-207 (214)
37 2pjz_A Hypothetical protein ST 99.9 5.2E-28 1.8E-32 226.2 5.5 163 97-266 4-215 (263)
38 2bbs_A Cystic fibrosis transme 99.9 2.3E-26 7.8E-31 218.0 11.3 163 97-266 43-247 (290)
39 3b5x_A Lipid A export ATP-bind 99.9 1.2E-25 4.2E-30 232.2 12.4 166 97-266 344-567 (582)
40 4a82_A Cystic fibrosis transme 99.9 3.6E-26 1.2E-30 236.0 7.9 166 97-267 342-565 (578)
41 3qf4_A ABC transporter, ATP-bi 99.9 4.4E-26 1.5E-30 235.7 7.4 167 97-267 344-567 (587)
42 2ewv_A Twitching motility prot 99.9 7E-25 2.4E-29 214.8 14.1 218 15-246 15-254 (372)
43 3b60_A Lipid A export ATP-bind 99.9 1.2E-25 4.3E-30 232.2 9.2 166 97-266 344-567 (582)
44 3qf4_B Uncharacterized ABC tra 99.9 9.9E-26 3.4E-30 233.6 7.9 166 97-267 357-579 (598)
45 1yqt_A RNAse L inhibitor; ATP- 99.9 3.2E-25 1.1E-29 226.9 8.9 165 97-266 290-493 (538)
46 2yl4_A ATP-binding cassette SU 99.9 2.8E-25 9.5E-30 230.1 8.1 166 97-266 344-570 (595)
47 3bk7_A ABC transporter ATP-bin 99.9 4.5E-25 1.5E-29 228.4 9.0 165 97-266 360-563 (607)
48 2pt7_A CAG-ALFA; ATPase, prote 99.9 2.8E-23 9.7E-28 200.2 19.7 219 17-253 34-290 (330)
49 3ozx_A RNAse L inhibitor; ATP 99.9 1.8E-24 6E-29 221.2 9.6 164 97-265 272-476 (538)
50 3j16_B RLI1P; ribosome recycli 99.9 1E-24 3.4E-29 225.6 7.5 154 112-267 363-560 (608)
51 1yqt_A RNAse L inhibitor; ATP- 99.9 3.9E-24 1.3E-28 218.8 9.1 151 99-253 26-234 (538)
52 3bk7_A ABC transporter ATP-bin 99.9 1.2E-23 4.1E-28 217.7 8.9 152 98-253 95-304 (607)
53 3ux8_A Excinuclease ABC, A sub 99.9 5.4E-23 1.8E-27 215.8 10.7 86 179-267 199-299 (670)
54 2iw3_A Elongation factor 3A; a 99.9 1E-22 3.5E-27 218.6 12.3 164 99-266 440-635 (986)
55 3g5u_A MCG1178, multidrug resi 99.9 3.5E-23 1.2E-27 230.5 7.7 167 97-267 1033-1259(1284)
56 4f4c_A Multidrug resistance pr 99.9 4.1E-23 1.4E-27 230.6 7.6 168 97-267 1079-1305(1321)
57 3g5u_A MCG1178, multidrug resi 99.9 4.9E-23 1.7E-27 229.4 7.1 166 97-267 390-614 (1284)
58 3j16_B RLI1P; ribosome recycli 99.9 1.3E-22 4.3E-27 209.9 7.0 151 99-254 82-298 (608)
59 4f4c_A Multidrug resistance pr 99.9 2.3E-22 7.9E-27 224.5 8.6 167 97-267 418-642 (1321)
60 2iw3_A Elongation factor 3A; a 99.9 4.7E-23 1.6E-27 221.3 1.9 79 180-260 899-981 (986)
61 3ozx_A RNAse L inhibitor; ATP 99.9 2.3E-22 8E-27 205.5 6.2 148 99-253 4-213 (538)
62 3ux8_A Excinuclease ABC, A sub 99.8 1.4E-21 4.6E-26 205.1 9.3 84 180-266 541-640 (670)
63 2eyu_A Twitching motility prot 99.8 1.7E-19 6E-24 168.2 13.5 130 112-251 17-146 (261)
64 4gp7_A Metallophosphoesterase; 99.8 1.5E-20 5.2E-25 164.1 4.6 120 114-241 1-165 (171)
65 3pih_A Uvrabc system protein A 99.8 1.3E-19 4.5E-24 194.1 11.7 85 180-267 803-903 (916)
66 2oap_1 GSPE-2, type II secreti 99.8 2E-18 6.8E-23 175.3 19.3 206 25-240 141-372 (511)
67 1p9r_A General secretion pathw 99.8 1.6E-18 5.3E-23 171.9 16.4 200 26-239 47-275 (418)
68 2npi_A Protein CLP1; CLP1-PCF1 99.8 2.8E-20 9.5E-25 186.7 2.0 151 113-266 129-338 (460)
69 2vf7_A UVRA2, excinuclease ABC 99.8 1.2E-19 4.2E-24 192.9 4.3 84 180-266 728-827 (842)
70 2ygr_A Uvrabc system protein A 99.7 1.2E-18 4.1E-23 186.7 9.1 85 180-267 861-961 (993)
71 2gza_A Type IV secretion syste 99.7 5.3E-17 1.8E-21 158.2 19.8 212 24-246 34-297 (361)
72 2r6f_A Excinuclease ABC subuni 99.7 1.1E-18 3.9E-23 186.2 7.6 85 180-267 843-943 (972)
73 4aby_A DNA repair protein RECN 99.7 1.5E-18 5E-23 171.4 5.7 72 183-258 296-380 (415)
74 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 2E-18 7E-23 168.5 5.5 74 181-257 278-364 (365)
75 3b85_A Phosphate starvation-in 99.7 3.7E-19 1.3E-23 160.5 -2.2 114 119-240 19-163 (208)
76 1ye8_A Protein THEP1, hypothet 99.7 1.8E-17 6E-22 145.9 6.7 128 124-258 2-160 (178)
77 3thx_A DNA mismatch repair pro 99.6 5.2E-16 1.8E-20 167.0 5.9 140 112-263 652-810 (934)
78 1tq4_A IIGP1, interferon-induc 99.6 1.5E-16 5.1E-21 157.2 1.6 141 112-253 39-254 (413)
79 2ehv_A Hypothetical protein PH 99.6 2.1E-15 7.1E-20 137.7 6.6 136 112-251 19-206 (251)
80 1tf7_A KAIC; homohexamer, hexa 99.6 1.1E-15 3.7E-20 155.9 4.8 135 116-254 275-444 (525)
81 2o8b_B DNA mismatch repair pro 99.6 5.1E-16 1.7E-20 168.8 2.0 153 100-262 761-938 (1022)
82 1cr0_A DNA primase/helicase; R 99.6 3.6E-15 1.2E-19 140.7 7.3 141 111-254 24-236 (296)
83 4a74_A DNA repair and recombin 99.5 8.9E-15 3.1E-19 131.8 6.9 130 117-246 20-195 (231)
84 2w0m_A SSO2452; RECA, SSPF, un 99.5 1.4E-14 5E-19 130.3 7.6 137 112-251 12-190 (235)
85 3b9q_A Chloroplast SRP recepto 99.5 2.4E-15 8.1E-20 143.0 2.2 117 113-234 91-256 (302)
86 1znw_A Guanylate kinase, GMP k 99.5 2.7E-16 9.3E-21 141.0 -4.9 54 196-251 137-202 (207)
87 3thx_B DNA mismatch repair pro 99.5 1.9E-14 6.5E-19 154.5 6.0 126 112-245 663-805 (918)
88 1e69_A Chromosome segregation 99.5 5.1E-14 1.8E-18 134.8 7.8 78 181-262 218-309 (322)
89 2og2_A Putative signal recogni 99.5 1.4E-14 4.7E-19 140.8 3.1 116 114-234 149-313 (359)
90 2v9p_A Replication protein E1; 99.4 1.1E-16 3.6E-21 152.3 -12.3 143 97-264 104-264 (305)
91 1ewq_A DNA mismatch repair pro 99.4 8.5E-14 2.9E-18 147.2 7.8 121 112-239 569-702 (765)
92 2obl_A ESCN; ATPase, hydrolase 99.4 1.1E-14 3.8E-19 141.0 0.5 150 97-264 48-253 (347)
93 3qkt_A DNA double-strand break 99.4 1.9E-13 6.4E-18 131.8 6.8 65 181-246 247-324 (339)
94 3aez_A Pantothenate kinase; tr 99.4 6.7E-15 2.3E-19 140.5 -4.7 126 119-246 87-240 (312)
95 1tf7_A KAIC; homohexamer, hexa 99.4 2.1E-13 7.1E-18 139.1 5.6 139 111-252 27-209 (525)
96 2dpy_A FLII, flagellum-specifi 99.4 2.9E-14 9.8E-19 142.2 -0.8 152 97-266 134-344 (438)
97 1wb9_A DNA mismatch repair pro 99.4 1.8E-13 6.3E-18 145.4 5.2 139 112-258 598-750 (800)
98 1pzn_A RAD51, DNA repair and r 99.4 1.1E-12 3.7E-17 127.1 9.8 128 112-239 120-290 (349)
99 1z6g_A Guanylate kinase; struc 99.4 2.8E-14 9.5E-19 129.2 -2.6 131 111-246 12-205 (218)
100 2cvh_A DNA repair and recombin 99.3 9.3E-13 3.2E-17 117.7 6.7 121 112-236 9-157 (220)
101 2jeo_A Uridine-cytidine kinase 99.3 8.7E-14 3E-18 127.9 -0.3 141 112-266 15-187 (245)
102 3sop_A Neuronal-specific septi 99.3 1.9E-13 6.4E-18 127.9 1.9 109 124-236 4-151 (270)
103 3ec2_A DNA replication protein 99.3 1.3E-12 4.5E-17 113.9 6.7 103 119-237 35-145 (180)
104 2i3b_A HCR-ntpase, human cance 99.3 1.3E-13 4.6E-18 122.2 -0.4 131 122-259 1-169 (189)
105 1nlf_A Regulatory protein REPA 99.3 8.7E-12 3E-16 116.6 10.7 119 118-239 26-185 (279)
106 2kjq_A DNAA-related protein; s 99.3 5E-12 1.7E-16 107.7 6.8 83 121-234 35-124 (149)
107 1n0w_A DNA repair protein RAD5 99.2 7.1E-12 2.4E-16 113.7 6.0 123 117-239 19-178 (243)
108 1rj9_A FTSY, signal recognitio 99.2 1.5E-11 5E-16 116.9 7.3 116 121-237 101-260 (304)
109 3pih_A Uvrabc system protein A 99.2 5E-12 1.7E-16 135.7 3.8 87 179-268 461-562 (916)
110 1f2t_B RAD50 ABC-ATPase; DNA d 99.1 1.7E-11 5.9E-16 104.4 3.6 69 179-250 54-135 (148)
111 1s96_A Guanylate kinase, GMP k 99.1 2.3E-10 7.8E-15 103.6 10.2 133 117-267 11-161 (219)
112 2ygr_A Uvrabc system protein A 99.1 3.2E-11 1.1E-15 129.5 3.4 85 179-266 518-617 (993)
113 2r6f_A Excinuclease ABC subuni 99.1 2.9E-11 9.9E-16 129.4 2.4 85 179-266 501-600 (972)
114 2qnr_A Septin-2, protein NEDD5 99.1 1.4E-11 4.9E-16 116.8 -0.5 126 99-236 3-168 (301)
115 3szr_A Interferon-induced GTP- 99.0 5.4E-12 1.9E-16 130.7 -5.3 165 97-262 13-225 (608)
116 1lw7_A Transcriptional regulat 99.0 1E-10 3.4E-15 113.7 3.3 133 112-246 158-339 (365)
117 2vf7_A UVRA2, excinuclease ABC 99.0 6.8E-11 2.3E-15 125.9 1.5 85 179-266 376-475 (842)
118 2qag_C Septin-7; cell cycle, c 99.0 6.8E-11 2.3E-15 117.0 -0.2 131 97-236 14-178 (418)
119 2bdt_A BH3686; alpha-beta prot 98.9 7.2E-12 2.5E-16 109.9 -6.9 45 216-264 137-182 (189)
120 1htw_A HI0065; nucleotide-bind 98.9 6.5E-11 2.2E-15 101.8 -0.9 49 99-150 12-60 (158)
121 1pui_A ENGB, probable GTP-bind 98.9 4.8E-10 1.6E-14 99.2 4.6 45 97-146 6-50 (210)
122 3asz_A Uridine kinase; cytidin 98.9 2.7E-12 9.2E-17 114.6 -10.4 39 119-161 3-41 (211)
123 3lda_A DNA repair protein RAD5 98.9 4.2E-09 1.4E-13 103.6 10.7 119 117-236 173-329 (400)
124 3e70_C DPA, signal recognition 98.9 4.6E-09 1.6E-13 100.7 9.6 116 120-236 127-280 (328)
125 1vma_A Cell division protein F 98.8 1.5E-09 5.2E-14 103.1 4.8 92 117-211 99-197 (306)
126 2px0_A Flagellar biosynthesis 98.8 5.5E-09 1.9E-13 98.7 8.0 131 120-258 103-247 (296)
127 2dr3_A UPF0273 protein PH0284; 98.8 1.2E-08 4.2E-13 92.2 9.2 47 112-159 12-59 (247)
128 4ad8_A DNA repair protein RECN 98.8 2.1E-09 7.3E-14 109.2 3.2 65 184-252 399-472 (517)
129 1sxj_E Activator 1 40 kDa subu 98.7 1.6E-08 5.5E-13 96.8 7.8 38 112-149 23-64 (354)
130 1ls1_A Signal recognition part 98.7 1E-08 3.5E-13 96.8 5.5 99 114-217 92-198 (295)
131 2zr9_A Protein RECA, recombina 98.7 4.8E-08 1.7E-12 94.4 10.2 113 118-236 57-199 (349)
132 2o5v_A DNA replication and rep 98.7 3.2E-09 1.1E-13 103.0 1.6 77 182-264 265-354 (359)
133 1udx_A The GTP-binding protein 98.6 8.9E-08 3E-12 94.6 9.7 136 111-247 146-321 (416)
134 2yhs_A FTSY, cell division pro 98.6 6.8E-08 2.3E-12 96.9 7.4 46 112-158 283-328 (503)
135 2ce7_A Cell division protein F 98.6 1.7E-07 5.9E-12 94.1 9.6 97 123-238 50-167 (476)
136 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 3.3E-09 1.1E-13 104.0 -3.6 60 200-262 139-209 (392)
137 2qm8_A GTPase/ATPase; G protei 98.5 9.4E-09 3.2E-13 98.9 -0.8 58 98-158 33-90 (337)
138 3hr8_A Protein RECA; alpha and 98.5 4.5E-07 1.5E-11 87.7 9.7 43 118-161 57-99 (356)
139 3tr0_A Guanylate kinase, GMP k 98.5 7.7E-08 2.6E-12 84.7 3.8 31 117-147 2-32 (205)
140 3k1j_A LON protease, ATP-depen 98.4 1.2E-07 4.1E-12 98.0 5.4 45 104-150 44-88 (604)
141 3lnc_A Guanylate kinase, GMP k 98.4 5.7E-08 2E-12 87.8 2.5 36 112-147 17-53 (231)
142 2b8t_A Thymidine kinase; deoxy 98.4 6.4E-07 2.2E-11 81.1 9.1 113 120-238 10-129 (223)
143 1nij_A Hypothetical protein YJ 98.4 3.9E-08 1.3E-12 93.7 0.9 53 183-240 142-194 (318)
144 3euj_A Chromosome partition pr 98.4 1.1E-07 3.6E-12 95.5 3.9 40 111-151 19-58 (483)
145 3b9p_A CG5977-PA, isoform A; A 98.4 2E-06 6.9E-11 80.2 12.2 72 121-211 53-124 (297)
146 2r6a_A DNAB helicase, replicat 98.4 5.8E-07 2E-11 89.7 8.7 47 112-158 193-239 (454)
147 3c8u_A Fructokinase; YP_612366 98.4 1.3E-07 4.6E-12 84.1 3.6 40 119-159 19-58 (208)
148 3kta_B Chromosome segregation 98.4 8.6E-08 2.9E-12 83.5 2.1 66 179-246 61-137 (173)
149 3uie_A Adenylyl-sulfate kinase 98.4 2.1E-07 7.2E-12 82.2 4.4 57 99-158 4-60 (200)
150 2x8a_A Nuclear valosin-contain 98.4 4.7E-07 1.6E-11 84.4 6.7 125 112-264 36-181 (274)
151 1fnn_A CDC6P, cell division co 98.4 1.5E-06 5.2E-11 83.6 10.4 118 124-247 46-181 (389)
152 1sq5_A Pantothenate kinase; P- 98.3 2.7E-07 9.2E-12 87.4 4.4 56 97-157 40-116 (308)
153 2qag_B Septin-6, protein NEDD5 98.3 1.6E-07 5.5E-12 92.8 2.5 43 101-146 22-66 (427)
154 3nwj_A ATSK2; P loop, shikimat 98.3 1.8E-07 6.1E-12 86.2 2.6 49 97-147 20-73 (250)
155 2xau_A PRE-mRNA-splicing facto 98.3 3.6E-07 1.2E-11 97.1 5.1 124 113-236 100-253 (773)
156 1zu4_A FTSY; GTPase, signal re 98.3 1.1E-06 3.6E-11 83.9 7.6 96 113-211 96-202 (320)
157 3a00_A Guanylate kinase, GMP k 98.3 3.3E-07 1.1E-11 80.0 3.4 28 122-149 1-28 (186)
158 2rcn_A Probable GTPase ENGC; Y 98.3 3.8E-07 1.3E-11 88.2 4.1 37 112-149 206-243 (358)
159 2z4s_A Chromosomal replication 98.3 1.1E-06 3.9E-11 87.2 7.5 125 123-263 131-265 (440)
160 1lvg_A Guanylate kinase, GMP k 98.2 3.5E-07 1.2E-11 80.9 2.8 28 120-147 2-29 (198)
161 1zp6_A Hypothetical protein AT 98.2 5E-07 1.7E-11 78.6 3.6 27 119-145 6-32 (191)
162 3kl4_A SRP54, signal recogniti 98.2 7E-07 2.4E-11 88.5 4.7 87 121-211 96-190 (433)
163 2qby_A CDC6 homolog 1, cell di 98.2 7.9E-07 2.7E-11 85.2 4.9 132 122-260 45-196 (386)
164 3h4m_A Proteasome-activating n 98.2 5.1E-06 1.8E-10 76.8 10.2 73 120-211 49-121 (285)
165 1v5w_A DMC1, meiotic recombina 98.2 1E-05 3.6E-10 77.6 12.4 44 118-161 118-166 (343)
166 2w58_A DNAI, primosome compone 98.2 3.9E-07 1.3E-11 80.2 2.2 35 123-158 55-89 (202)
167 3cf0_A Transitional endoplasmi 98.2 4.4E-06 1.5E-10 78.6 9.5 101 119-238 46-167 (301)
168 2r8r_A Sensor protein; KDPD, P 98.2 2.2E-06 7.6E-11 77.5 6.9 110 121-235 4-127 (228)
169 1w1w_A Structural maintenance 98.2 5E-07 1.7E-11 89.4 2.3 66 180-246 331-407 (430)
170 1lv7_A FTSH; alpha/beta domain 98.2 1.3E-05 4.5E-10 73.1 11.6 68 123-209 46-113 (257)
171 2z43_A DNA repair and recombin 98.2 1.1E-05 3.7E-10 76.8 11.3 121 117-237 102-260 (324)
172 2j41_A Guanylate kinase; GMP, 98.1 1.2E-06 4E-11 77.0 4.0 32 118-149 2-33 (207)
173 4a1f_A DNAB helicase, replicat 98.1 7E-06 2.4E-10 78.8 9.7 117 112-233 36-164 (338)
174 4fcw_A Chaperone protein CLPB; 98.1 2.3E-06 7.9E-11 80.1 6.0 35 123-158 48-82 (311)
175 3bos_A Putative DNA replicatio 98.1 4.7E-06 1.6E-10 74.3 7.8 89 121-235 51-148 (242)
176 1kgd_A CASK, peripheral plasma 98.1 1.3E-06 4.4E-11 75.9 3.8 28 121-148 4-31 (180)
177 1ixz_A ATP-dependent metallopr 98.1 1.3E-06 4.6E-11 79.7 4.0 34 112-147 41-74 (254)
178 3auy_A DNA double-strand break 98.1 7.8E-07 2.7E-11 86.4 2.5 68 181-251 279-359 (371)
179 3kta_A Chromosome segregation 98.1 2E-06 7E-11 74.2 4.7 36 113-149 18-53 (182)
180 1l8q_A Chromosomal replication 98.1 2.3E-06 8E-11 81.0 5.2 120 122-259 37-165 (324)
181 1u94_A RECA protein, recombina 98.1 5.9E-06 2E-10 79.9 8.0 114 118-237 59-202 (356)
182 2orw_A Thymidine kinase; TMTK, 98.1 8E-06 2.7E-10 71.5 8.0 108 121-236 2-114 (184)
183 1iy2_A ATP-dependent metallopr 98.1 2.2E-06 7.4E-11 79.6 4.6 34 112-147 65-98 (278)
184 2ius_A DNA translocase FTSK; n 98.0 4.3E-06 1.5E-10 84.4 6.4 31 114-144 159-189 (512)
185 3vaa_A Shikimate kinase, SK; s 98.0 2.2E-06 7.4E-11 75.5 3.4 37 111-147 14-50 (199)
186 2qz4_A Paraplegin; AAA+, SPG7, 98.0 2.1E-05 7.2E-10 71.5 10.2 72 121-211 38-109 (262)
187 4b4t_J 26S protease regulatory 98.0 1.7E-05 5.8E-10 77.7 9.8 119 120-264 180-322 (405)
188 4eun_A Thermoresistant glucoki 98.0 2.4E-06 8.1E-11 75.3 3.4 28 119-146 26-53 (200)
189 3tau_A Guanylate kinase, GMP k 98.0 2.9E-06 1E-10 75.4 4.1 29 120-148 6-34 (208)
190 4b4t_L 26S protease subunit RP 98.0 2.4E-05 8.1E-10 77.5 10.8 119 120-264 213-355 (437)
191 1ypw_A Transitional endoplasmi 98.0 9.6E-06 3.3E-10 86.5 8.5 100 119-237 235-352 (806)
192 1xwi_A SKD1 protein; VPS4B, AA 98.0 4.7E-05 1.6E-09 72.3 12.2 73 121-211 44-116 (322)
193 3io5_A Recombination and repai 98.0 3.5E-05 1.2E-09 73.1 10.9 113 119-236 26-173 (333)
194 1u0l_A Probable GTPase ENGC; p 98.0 2.9E-06 1E-10 80.0 3.3 32 119-150 166-197 (301)
195 4b4t_K 26S protease regulatory 98.0 1.9E-05 6.5E-10 78.1 9.0 99 121-238 205-324 (428)
196 3bh0_A DNAB-like replicative h 98.0 3.3E-05 1.1E-09 73.2 10.3 117 112-233 58-189 (315)
197 1in4_A RUVB, holliday junction 97.9 6.9E-07 2.4E-11 85.4 -1.6 47 99-147 23-76 (334)
198 1rz3_A Hypothetical protein rb 97.9 5.2E-06 1.8E-10 73.3 4.1 39 119-158 19-57 (201)
199 3m6a_A ATP-dependent protease 97.9 3E-06 1E-10 86.4 2.7 48 99-149 88-135 (543)
200 4b4t_I 26S protease regulatory 97.9 2.3E-05 7.9E-10 77.2 8.8 119 120-264 214-356 (437)
201 2bbw_A Adenylate kinase 4, AK4 97.9 4.8E-06 1.7E-10 75.7 3.6 29 121-149 26-57 (246)
202 1kag_A SKI, shikimate kinase I 97.9 5.2E-06 1.8E-10 70.9 3.4 28 121-148 3-30 (173)
203 4b4t_H 26S protease regulatory 97.9 3.6E-05 1.2E-09 76.5 9.6 120 119-264 240-383 (467)
204 1xx6_A Thymidine kinase; NESG, 97.9 4.8E-05 1.7E-09 67.0 9.3 112 120-238 6-121 (191)
205 3d8b_A Fidgetin-like protein 1 97.9 4E-05 1.4E-09 73.8 9.4 70 121-209 116-185 (357)
206 2vp4_A Deoxynucleoside kinase; 97.9 7.4E-06 2.5E-10 73.9 3.8 38 118-160 16-53 (230)
207 3cr8_A Sulfate adenylyltranfer 97.9 6.6E-06 2.3E-10 84.0 3.8 42 118-159 365-406 (552)
208 1njg_A DNA polymerase III subu 97.9 5.3E-05 1.8E-09 66.8 9.3 37 112-148 32-71 (250)
209 1w4r_A Thymidine kinase; type 97.9 7.5E-05 2.6E-09 65.9 10.0 108 121-238 19-130 (195)
210 1knq_A Gluconate kinase; ALFA/ 97.9 6.5E-06 2.2E-10 70.5 3.1 27 120-146 6-32 (175)
211 1qhl_A Protein (cell division 97.8 1.2E-06 4.2E-11 79.4 -1.5 29 123-151 28-56 (227)
212 3tqc_A Pantothenate kinase; bi 97.8 1E-05 3.5E-10 77.1 4.8 58 100-159 66-130 (321)
213 1xp8_A RECA protein, recombina 97.8 6.5E-05 2.2E-09 72.8 10.4 115 118-238 70-214 (366)
214 3t15_A Ribulose bisphosphate c 97.8 2.7E-05 9.2E-10 73.0 7.3 25 123-147 37-61 (293)
215 3syl_A Protein CBBX; photosynt 97.8 8.2E-05 2.8E-09 69.4 10.6 27 122-148 67-93 (309)
216 1t9h_A YLOQ, probable GTPase E 97.8 3.3E-06 1.1E-10 80.0 1.0 32 118-149 169-200 (307)
217 1svm_A Large T antigen; AAA+ f 97.8 8.1E-06 2.8E-10 79.5 3.6 36 111-146 158-193 (377)
218 4b4t_M 26S protease regulatory 97.8 2.6E-05 9E-10 77.2 7.3 119 120-264 213-355 (434)
219 4e22_A Cytidylate kinase; P-lo 97.8 8.7E-06 3E-10 74.6 3.6 33 117-149 22-57 (252)
220 2v1u_A Cell division control p 97.8 1.5E-05 5E-10 76.4 5.3 112 121-237 43-179 (387)
221 1d2n_A N-ethylmaleimide-sensit 97.8 3E-05 1E-09 71.4 6.8 99 122-238 64-180 (272)
222 1jbk_A CLPB protein; beta barr 97.8 7.5E-05 2.6E-09 63.5 8.8 27 122-148 43-69 (195)
223 2yv5_A YJEQ protein; hydrolase 97.8 1.3E-05 4.3E-10 75.7 4.2 30 120-150 163-192 (302)
224 2o5v_A DNA replication and rep 97.8 1.3E-05 4.4E-10 77.6 4.4 43 97-144 6-48 (359)
225 2qp9_X Vacuolar protein sortin 97.8 5.2E-05 1.8E-09 73.0 8.4 71 122-211 84-154 (355)
226 2f1r_A Molybdopterin-guanine d 97.8 8E-06 2.7E-10 70.7 2.3 27 123-149 3-29 (171)
227 2zan_A Vacuolar protein sortin 97.8 7.9E-05 2.7E-09 74.0 9.8 118 121-263 166-303 (444)
228 3vfd_A Spastin; ATPase, microt 97.7 0.00014 4.7E-09 70.7 11.0 71 121-210 147-217 (389)
229 1sxj_D Activator 1 41 kDa subu 97.7 8.5E-05 2.9E-09 70.4 9.1 36 112-147 46-83 (353)
230 2i1q_A DNA repair and recombin 97.7 0.00017 5.7E-09 68.3 11.1 44 118-161 94-152 (322)
231 3eie_A Vacuolar protein sortin 97.7 4.2E-05 1.5E-09 72.4 6.9 71 122-211 51-121 (322)
232 2p67_A LAO/AO transport system 97.7 1.8E-05 6.3E-10 75.8 4.3 55 101-158 37-91 (341)
233 2dhr_A FTSH; AAA+ protein, hex 97.7 1.2E-05 4E-10 81.2 3.0 32 114-147 58-89 (499)
234 3ney_A 55 kDa erythrocyte memb 97.7 1.7E-05 5.9E-10 70.3 3.7 28 120-147 17-44 (197)
235 3dm5_A SRP54, signal recogniti 97.7 0.0002 6.7E-09 71.0 11.7 86 122-211 100-193 (443)
236 2chg_A Replication factor C sm 97.7 0.00012 4.2E-09 63.7 8.8 36 112-147 26-63 (226)
237 3t34_A Dynamin-related protein 97.7 0.00015 5E-09 69.8 10.1 31 112-145 27-57 (360)
238 2qgz_A Helicase loader, putati 97.7 1.9E-05 6.3E-10 74.8 3.6 36 122-158 152-188 (308)
239 2pez_A Bifunctional 3'-phospho 97.7 2.5E-05 8.5E-10 67.2 4.1 38 120-158 3-40 (179)
240 2qt1_A Nicotinamide riboside k 97.7 2E-05 6.7E-10 69.5 3.4 34 114-147 13-46 (207)
241 2j9r_A Thymidine kinase; TK1, 97.7 9.7E-05 3.3E-09 66.1 7.9 113 120-239 26-142 (214)
242 2wji_A Ferrous iron transport 97.7 0.00024 8.2E-09 59.9 9.8 23 124-146 5-27 (165)
243 2zts_A Putative uncharacterize 97.6 0.00023 7.8E-09 63.8 9.7 39 118-158 26-66 (251)
244 2yvu_A Probable adenylyl-sulfa 97.6 3.8E-05 1.3E-09 66.5 4.1 39 119-158 10-48 (186)
245 2r62_A Cell division protease 97.6 1.8E-05 6.1E-10 72.5 2.0 25 123-147 45-69 (268)
246 1j8m_F SRP54, signal recogniti 97.6 9.1E-05 3.1E-09 69.7 6.9 44 115-160 92-135 (297)
247 2vhj_A Ntpase P4, P4; non- hyd 97.6 0.00013 4.3E-09 69.4 7.8 28 118-145 119-146 (331)
248 2www_A Methylmalonic aciduria 97.6 4.3E-05 1.5E-09 73.5 4.5 36 122-158 74-109 (349)
249 2dy1_A Elongation factor G; tr 97.6 0.00016 5.5E-09 75.5 9.2 124 118-246 5-146 (665)
250 1m7g_A Adenylylsulfate kinase; 97.6 3.2E-05 1.1E-09 68.5 3.2 42 117-158 20-61 (211)
251 2qby_B CDC6 homolog 3, cell di 97.6 0.00012 4.2E-09 70.1 7.5 121 122-242 45-181 (384)
252 1w1w_A Structural maintenance 97.5 3.8E-05 1.3E-09 75.8 3.8 31 119-149 23-53 (430)
253 2e87_A Hypothetical protein PH 97.5 0.00026 9E-09 68.0 9.6 25 122-146 167-191 (357)
254 4eaq_A DTMP kinase, thymidylat 97.5 6.7E-05 2.3E-09 67.8 5.1 37 120-158 24-60 (229)
255 1sxj_C Activator 1 40 kDa subu 97.5 2.6E-05 9E-10 74.3 2.3 44 104-149 28-73 (340)
256 3e2i_A Thymidine kinase; Zn-bi 97.5 0.00023 7.9E-09 63.7 8.2 112 120-239 26-142 (219)
257 3cf2_A TER ATPase, transitiona 97.5 0.00012 4.2E-09 77.6 7.4 98 122-238 238-353 (806)
258 3pvs_A Replication-associated 97.5 0.00021 7.3E-09 71.0 8.7 122 113-261 39-165 (447)
259 2p65_A Hypothetical protein PF 97.5 9.4E-05 3.2E-09 62.9 5.2 27 122-148 43-69 (187)
260 1cke_A CK, MSSA, protein (cyti 97.5 4.9E-05 1.7E-09 67.6 3.4 26 122-147 5-30 (227)
261 3n70_A Transport activator; si 97.5 0.00026 9E-09 58.9 7.6 30 119-148 21-50 (145)
262 3hu3_A Transitional endoplasmi 97.5 0.00047 1.6E-08 69.3 10.8 71 120-209 236-306 (489)
263 3cmu_A Protein RECA, recombina 97.5 0.00034 1.2E-08 80.4 10.7 113 119-236 1424-1565(2050)
264 3cmw_A Protein RECA, recombina 97.5 0.00033 1.1E-08 79.5 10.4 113 119-236 729-870 (1706)
265 2q6t_A DNAB replication FORK h 97.5 0.00047 1.6E-08 68.3 10.4 117 112-232 190-317 (444)
266 1jjv_A Dephospho-COA kinase; P 97.5 5.7E-05 1.9E-09 66.4 3.4 21 124-144 4-24 (206)
267 2qor_A Guanylate kinase; phosp 97.4 5.9E-05 2E-09 66.4 3.4 30 118-147 8-37 (204)
268 2bjv_A PSP operon transcriptio 97.4 0.00018 6.1E-09 65.8 6.6 41 117-158 24-64 (265)
269 1oix_A RAS-related protein RAB 97.4 8E-05 2.7E-09 64.7 3.7 25 124-148 31-55 (191)
270 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 8.6E-05 3E-09 62.5 3.4 25 122-146 23-47 (149)
271 2orv_A Thymidine kinase; TP4A 97.4 0.0011 3.8E-08 59.9 10.8 110 120-238 17-129 (234)
272 3cmw_A Protein RECA, recombina 97.4 0.0005 1.7E-08 78.1 10.3 112 119-236 380-521 (1706)
273 2if2_A Dephospho-COA kinase; a 97.4 9.3E-05 3.2E-09 64.8 3.4 21 124-144 3-23 (204)
274 1y63_A LMAJ004144AAA protein; 97.3 0.00011 3.8E-09 63.6 3.8 31 115-145 3-33 (184)
275 3uk6_A RUVB-like 2; hexameric 97.3 0.0012 3.9E-08 63.1 11.1 28 121-148 69-96 (368)
276 3llm_A ATP-dependent RNA helic 97.3 0.00033 1.1E-08 63.0 6.9 30 115-144 69-98 (235)
277 1jr3_A DNA polymerase III subu 97.3 0.00051 1.7E-08 65.5 8.4 37 112-148 25-64 (373)
278 2c9o_A RUVB-like 1; hexameric 97.3 0.00013 4.5E-09 72.6 4.4 73 121-211 62-137 (456)
279 2f9l_A RAB11B, member RAS onco 97.3 0.0001 3.6E-09 64.1 3.2 24 124-147 7-30 (199)
280 1np6_A Molybdopterin-guanine d 97.3 0.00015 5.2E-09 62.8 4.1 34 123-157 7-40 (174)
281 3co5_A Putative two-component 97.3 0.00031 1.1E-08 58.3 5.9 28 119-146 24-51 (143)
282 3u61_B DNA polymerase accessor 97.3 0.00073 2.5E-08 63.5 9.1 118 112-262 35-166 (324)
283 1odf_A YGR205W, hypothetical 3 97.3 9.8E-05 3.4E-09 69.2 2.9 29 121-149 30-58 (290)
284 1sxj_B Activator 1 37 kDa subu 97.3 0.00051 1.7E-08 63.9 7.7 36 112-147 30-67 (323)
285 3cm0_A Adenylate kinase; ATP-b 97.3 0.00011 3.7E-09 63.3 2.8 27 120-146 2-28 (186)
286 1ypw_A Transitional endoplasmi 97.3 9.1E-05 3.1E-09 79.0 2.7 73 119-210 508-580 (806)
287 3pxg_A Negative regulator of g 97.3 0.00031 1E-08 70.2 6.3 119 121-262 200-326 (468)
288 3lxx_A GTPase IMAP family memb 97.2 0.0019 6.6E-08 57.9 10.9 25 124-148 31-55 (239)
289 1qvr_A CLPB protein; coiled co 97.2 0.0007 2.4E-08 72.6 9.0 35 123-158 589-623 (854)
290 3kb2_A SPBC2 prophage-derived 97.2 0.00015 5E-09 61.3 3.0 24 124-147 3-26 (173)
291 1qhx_A CPT, protein (chloramph 97.2 0.00018 6.2E-09 61.3 3.6 26 122-147 3-28 (178)
292 2ga8_A Hypothetical 39.9 kDa p 97.2 0.00014 4.7E-09 70.0 3.0 37 112-148 12-50 (359)
293 3t61_A Gluconokinase; PSI-biol 97.2 0.00013 4.4E-09 63.9 2.6 25 122-146 18-42 (202)
294 1iqp_A RFCS; clamp loader, ext 97.2 0.00049 1.7E-08 64.2 6.8 36 112-147 34-71 (327)
295 3lxw_A GTPase IMAP family memb 97.2 0.00088 3E-08 60.9 8.2 23 124-146 23-45 (247)
296 3pfi_A Holliday junction ATP-d 97.2 0.0017 5.7E-08 61.3 10.4 25 123-147 56-80 (338)
297 2ffh_A Protein (FFH); SRP54, s 97.2 0.00019 6.5E-09 70.8 3.9 38 121-159 97-134 (425)
298 3bgw_A DNAB-like replicative h 97.2 0.0019 6.6E-08 64.0 11.1 116 112-232 187-317 (444)
299 3ice_A Transcription terminati 97.2 0.00015 5.3E-09 70.4 3.0 51 97-148 136-200 (422)
300 1hqc_A RUVB; extended AAA-ATPa 97.2 0.0016 5.6E-08 60.8 10.0 26 122-147 38-63 (324)
301 3pxi_A Negative regulator of g 97.2 0.0012 4.1E-08 69.8 10.0 91 124-234 523-629 (758)
302 3cmu_A Protein RECA, recombina 97.1 0.0011 3.7E-08 76.3 10.0 113 119-237 380-522 (2050)
303 3e1s_A Exodeoxyribonuclease V, 97.1 0.00078 2.7E-08 69.0 8.0 36 121-157 203-238 (574)
304 1um8_A ATP-dependent CLP prote 97.1 0.0017 5.7E-08 62.5 9.9 26 121-146 71-96 (376)
305 1ojl_A Transcriptional regulat 97.1 0.0008 2.7E-08 63.2 7.5 31 118-148 21-51 (304)
306 1xjc_A MOBB protein homolog; s 97.1 0.00029 1E-08 60.7 4.0 35 123-158 5-39 (169)
307 4ag6_A VIRB4 ATPase, type IV s 97.1 0.00031 1.1E-08 68.2 4.7 42 121-163 34-75 (392)
308 2rhm_A Putative kinase; P-loop 97.1 0.00023 7.8E-09 61.4 3.3 27 120-146 3-29 (193)
309 2v3c_C SRP54, signal recogniti 97.1 0.00042 1.4E-08 68.6 5.5 37 123-160 100-136 (432)
310 1kht_A Adenylate kinase; phosp 97.1 0.00025 8.4E-09 61.0 3.2 26 122-147 3-28 (192)
311 2plr_A DTMP kinase, probable t 97.1 0.00042 1.4E-08 60.5 4.7 36 121-158 3-38 (213)
312 3lw7_A Adenylate kinase relate 97.1 0.00028 9.5E-09 59.3 3.2 19 124-142 3-21 (179)
313 1q57_A DNA primase/helicase; d 97.0 0.0021 7.1E-08 64.6 10.1 47 112-158 232-278 (503)
314 1sxj_A Activator 1 95 kDa subu 97.0 0.0013 4.6E-08 66.3 8.6 34 122-159 77-110 (516)
315 2gj8_A MNME, tRNA modification 97.0 0.00031 1.1E-08 59.8 3.4 26 121-146 3-28 (172)
316 3qks_A DNA double-strand break 97.0 0.0003 1E-08 62.2 3.2 25 123-147 24-48 (203)
317 2v54_A DTMP kinase, thymidylat 97.0 0.0004 1.4E-08 60.5 4.0 26 121-146 3-28 (204)
318 1r6b_X CLPA protein; AAA+, N-t 97.0 0.0014 4.7E-08 69.1 8.7 31 124-158 490-520 (758)
319 1nks_A Adenylate kinase; therm 97.0 0.00047 1.6E-08 59.2 4.2 34 124-158 3-36 (194)
320 4dcu_A GTP-binding protein ENG 97.0 0.0012 4.2E-08 65.5 7.7 112 124-237 25-143 (456)
321 1ly1_A Polynucleotide kinase; 97.0 0.00036 1.2E-08 59.3 3.4 22 123-144 3-24 (181)
322 1qvr_A CLPB protein; coiled co 97.0 0.0016 5.6E-08 69.7 9.2 100 122-234 191-308 (854)
323 3te6_A Regulatory protein SIR3 97.0 0.00075 2.6E-08 64.1 5.7 28 121-148 44-71 (318)
324 1via_A Shikimate kinase; struc 97.0 0.0003 1E-08 60.1 2.7 24 124-147 6-29 (175)
325 3iij_A Coilin-interacting nucl 97.0 0.00035 1.2E-08 59.9 3.1 27 120-146 9-35 (180)
326 2jaq_A Deoxyguanosine kinase; 97.0 0.00036 1.2E-08 60.6 3.1 24 124-147 2-25 (205)
327 2c95_A Adenylate kinase 1; tra 97.0 0.00039 1.3E-08 60.1 3.3 28 119-146 6-33 (196)
328 1q3t_A Cytidylate kinase; nucl 97.0 0.0004 1.4E-08 62.5 3.5 28 119-146 13-40 (236)
329 2ze6_A Isopentenyl transferase 97.0 0.00036 1.2E-08 63.9 3.2 24 124-147 3-26 (253)
330 3trf_A Shikimate kinase, SK; a 97.0 0.00041 1.4E-08 59.6 3.4 26 122-147 5-30 (185)
331 2p5t_B PEZT; postsegregational 97.0 0.00025 8.7E-09 64.7 2.1 28 120-147 30-57 (253)
332 1gtv_A TMK, thymidylate kinase 96.9 0.00018 6.2E-09 63.2 1.0 34 124-158 2-35 (214)
333 2z0h_A DTMP kinase, thymidylat 96.9 0.00065 2.2E-08 58.7 4.3 35 124-159 2-36 (197)
334 2bwj_A Adenylate kinase 5; pho 96.9 0.00036 1.2E-08 60.4 2.7 29 119-147 9-37 (199)
335 1nn5_A Similar to deoxythymidy 96.9 0.0007 2.4E-08 59.3 4.5 29 120-148 7-35 (215)
336 2wwf_A Thymidilate kinase, put 96.9 0.00047 1.6E-08 60.4 3.3 29 120-148 8-36 (212)
337 1tev_A UMP-CMP kinase; ploop, 96.9 0.00048 1.7E-08 59.2 3.2 25 122-146 3-27 (196)
338 1a5t_A Delta prime, HOLB; zinc 96.9 0.0062 2.1E-07 57.7 11.1 36 113-148 12-50 (334)
339 1w5s_A Origin recognition comp 96.8 0.002 6.9E-08 62.1 7.6 28 121-148 49-78 (412)
340 1vht_A Dephospho-COA kinase; s 96.8 0.00062 2.1E-08 60.2 3.6 23 122-144 4-26 (218)
341 1ega_A Protein (GTP-binding pr 96.8 0.00046 1.6E-08 64.8 2.8 25 122-146 8-32 (301)
342 2vli_A Antibiotic resistance p 96.8 0.00047 1.6E-08 58.9 2.6 27 121-147 4-30 (183)
343 2pbr_A DTMP kinase, thymidylat 96.8 0.00089 3.1E-08 57.5 4.3 34 124-158 2-35 (195)
344 2wjg_A FEOB, ferrous iron tran 96.8 0.00062 2.1E-08 58.1 3.1 22 124-145 9-30 (188)
345 1aky_A Adenylate kinase; ATP:A 96.8 0.0007 2.4E-08 60.0 3.5 27 121-147 3-29 (220)
346 3cf2_A TER ATPase, transitiona 96.8 0.0012 4E-08 70.1 5.5 116 122-263 511-650 (806)
347 3r20_A Cytidylate kinase; stru 96.8 0.00066 2.3E-08 61.5 3.1 26 122-147 9-34 (233)
348 1zuh_A Shikimate kinase; alpha 96.7 0.00074 2.5E-08 57.1 3.2 25 123-147 8-32 (168)
349 4ad8_A DNA repair protein RECN 96.7 0.00031 1.1E-08 71.0 1.0 34 112-146 51-84 (517)
350 1gvn_B Zeta; postsegregational 96.7 0.00063 2.2E-08 63.5 3.0 26 121-146 32-57 (287)
351 2cdn_A Adenylate kinase; phosp 96.7 0.00083 2.8E-08 58.6 3.6 26 122-147 20-45 (201)
352 2gno_A DNA polymerase III, gam 96.7 0.0093 3.2E-07 56.0 11.1 34 112-145 6-41 (305)
353 2zej_A Dardarin, leucine-rich 96.7 0.00064 2.2E-08 58.3 2.8 23 124-146 4-26 (184)
354 1zd8_A GTP:AMP phosphotransfer 96.7 0.00087 3E-08 59.8 3.6 26 121-146 6-31 (227)
355 1uf9_A TT1252 protein; P-loop, 96.7 0.00094 3.2E-08 57.9 3.6 24 122-145 8-31 (203)
356 3umf_A Adenylate kinase; rossm 96.7 0.00089 3.1E-08 60.0 3.4 31 117-147 24-54 (217)
357 3pxi_A Negative regulator of g 96.7 0.0019 6.4E-08 68.2 6.3 118 121-262 200-326 (758)
358 2iyv_A Shikimate kinase, SK; t 96.6 0.0008 2.7E-08 57.7 2.8 25 123-147 3-27 (184)
359 3ake_A Cytidylate kinase; CMP 96.6 0.0009 3.1E-08 58.3 3.1 24 124-147 4-27 (208)
360 1qf9_A UMP/CMP kinase, protein 96.6 0.00095 3.2E-08 57.2 3.1 24 123-146 7-30 (194)
361 1e6c_A Shikimate kinase; phosp 96.6 0.00085 2.9E-08 56.7 2.7 25 123-147 3-27 (173)
362 3fb4_A Adenylate kinase; psych 96.6 0.001 3.5E-08 58.6 3.3 23 124-146 2-24 (216)
363 3dl0_A Adenylate kinase; phosp 96.6 0.001 3.5E-08 58.7 3.3 23 124-146 2-24 (216)
364 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0032 1.1E-07 66.3 7.6 28 121-148 206-233 (758)
365 1zak_A Adenylate kinase; ATP:A 96.6 0.00097 3.3E-08 59.2 3.0 26 122-147 5-30 (222)
366 4edh_A DTMP kinase, thymidylat 96.6 0.0017 5.9E-08 57.9 4.5 38 121-159 5-42 (213)
367 2iut_A DNA translocase FTSK; n 96.6 0.0033 1.1E-07 64.1 7.0 41 119-160 211-255 (574)
368 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0012 4.1E-08 60.4 3.5 37 121-158 3-39 (260)
369 1ex7_A Guanylate kinase; subst 96.6 0.0011 3.9E-08 57.9 3.1 24 124-147 3-26 (186)
370 2pt5_A Shikimate kinase, SK; a 96.6 0.0012 4E-08 55.6 3.1 24 124-147 2-25 (168)
371 1ukz_A Uridylate kinase; trans 96.5 0.0013 4.4E-08 57.3 3.5 25 122-146 15-39 (203)
372 3be4_A Adenylate kinase; malar 96.5 0.0014 4.8E-08 58.1 3.5 25 122-146 5-29 (217)
373 3k53_A Ferrous iron transport 96.5 0.0014 4.7E-08 60.3 3.3 24 124-147 5-28 (271)
374 1f6b_A SAR1; gtpases, N-termin 96.4 0.00097 3.3E-08 58.0 1.9 32 112-144 16-47 (198)
375 1m2o_B GTP-binding protein SAR 96.4 0.0018 6.2E-08 55.8 3.5 33 112-145 14-46 (190)
376 1z2a_A RAS-related protein RAB 96.4 0.0017 5.8E-08 53.9 3.1 23 124-146 7-29 (168)
377 3eph_A TRNA isopentenyltransfe 96.4 0.009 3.1E-07 58.3 8.6 25 123-147 3-27 (409)
378 2ged_A SR-beta, signal recogni 96.4 0.0017 5.9E-08 55.6 3.2 23 124-146 50-72 (193)
379 3sr0_A Adenylate kinase; phosp 96.4 0.0018 6.2E-08 57.4 3.3 24 124-147 2-25 (206)
380 3tlx_A Adenylate kinase 2; str 96.4 0.0019 6.6E-08 58.5 3.5 27 120-146 27-53 (243)
381 3auy_A DNA double-strand break 96.4 0.0017 5.9E-08 62.6 3.4 22 123-144 26-47 (371)
382 2ce2_X GTPase HRAS; signaling 96.4 0.0018 6.2E-08 53.3 3.1 23 124-146 5-27 (166)
383 1kao_A RAP2A; GTP-binding prot 96.4 0.0019 6.3E-08 53.4 3.2 23 124-146 5-27 (167)
384 2xb4_A Adenylate kinase; ATP-b 96.4 0.0018 6.3E-08 57.7 3.4 23 124-146 2-24 (223)
385 2r44_A Uncharacterized protein 96.4 0.00086 2.9E-08 63.3 1.2 37 112-148 36-72 (331)
386 3p32_A Probable GTPase RV1496/ 96.3 0.0029 1E-07 60.6 4.9 37 122-159 79-115 (355)
387 2dyk_A GTP-binding protein; GT 96.3 0.0019 6.6E-08 53.2 3.2 23 124-146 3-25 (161)
388 2erx_A GTP-binding protein DI- 96.3 0.002 6.7E-08 53.6 3.2 22 124-145 5-26 (172)
389 1ak2_A Adenylate kinase isoenz 96.3 0.0021 7.3E-08 57.5 3.6 27 121-147 15-41 (233)
390 1uj2_A Uridine-cytidine kinase 96.3 0.0019 6.6E-08 58.6 3.3 25 123-147 23-47 (252)
391 1z0j_A RAB-22, RAS-related pro 96.3 0.002 6.9E-08 53.5 3.2 23 124-146 8-30 (170)
392 1u8z_A RAS-related protein RAL 96.3 0.002 6.9E-08 53.2 3.1 23 124-146 6-28 (168)
393 1e4v_A Adenylate kinase; trans 96.3 0.002 7E-08 56.8 3.3 23 124-146 2-24 (214)
394 2nzj_A GTP-binding protein REM 96.3 0.002 6.8E-08 53.9 3.1 23 124-146 6-28 (175)
395 1g16_A RAS-related protein SEC 96.3 0.0021 7.1E-08 53.4 3.1 23 124-146 5-27 (170)
396 1tue_A Replication protein E1; 96.3 0.0018 6E-08 57.6 2.6 28 119-146 55-82 (212)
397 3q72_A GTP-binding protein RAD 96.3 0.0017 6E-08 53.8 2.5 23 124-146 4-26 (166)
398 3lv8_A DTMP kinase, thymidylat 96.2 0.0033 1.1E-07 57.0 4.4 37 121-158 26-63 (236)
399 1ek0_A Protein (GTP-binding pr 96.2 0.0022 7.7E-08 53.1 3.1 23 124-146 5-27 (170)
400 1z08_A RAS-related protein RAB 96.2 0.0023 7.9E-08 53.2 3.2 23 124-146 8-30 (170)
401 2grj_A Dephospho-COA kinase; T 96.2 0.0023 8E-08 56.0 3.3 24 123-146 13-36 (192)
402 1wms_A RAB-9, RAB9, RAS-relate 96.2 0.0023 7.8E-08 53.7 3.2 23 124-146 9-31 (177)
403 1z6t_A APAF-1, apoptotic prote 96.2 0.011 3.6E-07 60.2 8.6 119 112-236 133-268 (591)
404 1ky3_A GTP-binding protein YPT 96.2 0.0024 8.1E-08 53.7 3.2 23 124-146 10-32 (182)
405 1c1y_A RAS-related protein RAP 96.2 0.0024 8.1E-08 52.9 3.1 23 124-146 5-27 (167)
406 4tmk_A Protein (thymidylate ki 96.2 0.0036 1.2E-07 55.8 4.5 38 121-159 2-40 (213)
407 3q85_A GTP-binding protein REM 96.2 0.0023 7.9E-08 53.2 3.0 23 124-146 4-26 (169)
408 2qtf_A Protein HFLX, GTP-bindi 96.2 0.0021 7.1E-08 62.1 3.1 24 124-147 181-204 (364)
409 2ohf_A Protein OLA1, GTP-bindi 96.2 0.0022 7.6E-08 62.6 3.1 29 117-145 17-45 (396)
410 1svi_A GTP-binding protein YSX 96.2 0.0023 7.7E-08 54.8 2.9 23 123-145 24-46 (195)
411 1mky_A Probable GTP-binding pr 96.2 0.0023 7.7E-08 63.2 3.2 23 124-146 182-204 (439)
412 2fn4_A P23, RAS-related protei 96.2 0.0026 8.9E-08 53.4 3.1 22 124-145 11-32 (181)
413 2qen_A Walker-type ATPase; unk 96.2 0.0021 7.1E-08 60.3 2.7 35 112-146 21-55 (350)
414 1r2q_A RAS-related protein RAB 96.2 0.0027 9.1E-08 52.6 3.1 22 124-145 8-29 (170)
415 3tw8_B RAS-related protein RAB 96.2 0.0022 7.5E-08 53.9 2.6 23 124-146 11-33 (181)
416 3pqc_A Probable GTP-binding pr 96.1 0.0025 8.6E-08 54.3 2.9 23 124-146 25-47 (195)
417 3clv_A RAB5 protein, putative; 96.1 0.0028 9.4E-08 54.1 3.2 23 124-146 9-31 (208)
418 3a8t_A Adenylate isopentenyltr 96.1 0.0031 1.1E-07 60.2 3.7 27 121-147 39-65 (339)
419 4dsu_A GTPase KRAS, isoform 2B 96.1 0.0029 9.8E-08 53.6 3.2 23 124-146 6-28 (189)
420 1ofh_A ATP-dependent HSL prote 96.1 0.0026 8.8E-08 58.8 3.1 26 122-147 50-75 (310)
421 2lkc_A Translation initiation 96.1 0.0037 1.3E-07 52.4 3.8 26 121-146 7-32 (178)
422 2qmh_A HPR kinase/phosphorylas 96.1 0.0028 9.5E-08 56.1 3.0 27 120-146 32-58 (205)
423 2wsm_A Hydrogenase expression/ 96.1 0.0042 1.4E-07 54.5 4.3 34 123-158 31-64 (221)
424 1ltq_A Polynucleotide kinase; 96.1 0.003 1E-07 58.5 3.4 23 123-145 3-25 (301)
425 2cxx_A Probable GTP-binding pr 96.1 0.0027 9.3E-08 53.9 2.8 23 124-146 3-25 (190)
426 3bc1_A RAS-related protein RAB 96.1 0.003 1E-07 53.5 3.1 23 124-146 13-35 (195)
427 3nbx_X ATPase RAVA; AAA+ ATPas 96.1 0.002 6.9E-08 64.9 2.2 36 112-147 31-66 (500)
428 2f6r_A COA synthase, bifunctio 96.1 0.0031 1.1E-07 58.5 3.3 22 123-144 76-97 (281)
429 1fzq_A ADP-ribosylation factor 96.1 0.0025 8.5E-08 54.4 2.5 23 123-145 17-39 (181)
430 2hxs_A RAB-26, RAS-related pro 96.1 0.0033 1.1E-07 52.7 3.3 23 124-146 8-30 (178)
431 1upt_A ARL1, ADP-ribosylation 96.1 0.0032 1.1E-07 52.4 3.1 23 123-145 8-30 (171)
432 2oil_A CATX-8, RAS-related pro 96.1 0.0031 1.1E-07 54.0 3.1 23 124-146 27-49 (193)
433 2xxa_A Signal recognition part 96.0 0.0087 3E-07 59.1 6.7 39 122-160 100-138 (433)
434 2y8e_A RAB-protein 6, GH09086P 96.0 0.0032 1.1E-07 52.7 3.1 23 124-146 16-38 (179)
435 3b1v_A Ferrous iron uptake tra 96.0 0.003 1E-07 58.4 3.1 23 124-146 5-27 (272)
436 1z0f_A RAB14, member RAS oncog 96.0 0.0034 1.2E-07 52.6 3.1 23 124-146 17-39 (179)
437 2a9k_A RAS-related protein RAL 96.0 0.0034 1.2E-07 53.0 3.1 23 124-146 20-42 (187)
438 1nrj_B SR-beta, signal recogni 96.0 0.0033 1.1E-07 55.0 3.1 23 124-146 14-36 (218)
439 3t1o_A Gliding protein MGLA; G 96.0 0.0037 1.3E-07 53.2 3.3 26 124-149 16-41 (198)
440 3d3q_A TRNA delta(2)-isopenten 96.0 0.0034 1.2E-07 60.0 3.3 25 123-147 8-32 (340)
441 2efe_B Small GTP-binding prote 96.0 0.0036 1.2E-07 52.6 3.2 23 124-146 14-36 (181)
442 1r8s_A ADP-ribosylation factor 96.0 0.0037 1.3E-07 51.7 3.1 22 125-146 3-24 (164)
443 3hws_A ATP-dependent CLP prote 96.0 0.0033 1.1E-07 60.2 3.2 26 121-146 50-75 (363)
444 2bme_A RAB4A, RAS-related prot 96.0 0.0036 1.2E-07 53.0 3.1 23 124-146 12-34 (186)
445 3crm_A TRNA delta(2)-isopenten 95.9 0.0037 1.3E-07 59.3 3.3 25 123-147 6-30 (323)
446 2g6b_A RAS-related protein RAB 95.9 0.0038 1.3E-07 52.5 3.1 23 124-146 12-34 (180)
447 1moz_A ARL1, ADP-ribosylation 95.9 0.0021 7.3E-08 54.3 1.5 23 122-144 18-40 (183)
448 3con_A GTPase NRAS; structural 95.9 0.0038 1.3E-07 53.2 3.1 23 124-146 23-45 (190)
449 3iev_A GTP-binding protein ERA 95.9 0.0038 1.3E-07 58.6 3.2 24 123-146 11-34 (308)
450 1vg8_A RAS-related protein RAB 95.9 0.004 1.4E-07 53.7 3.2 23 124-146 10-32 (207)
451 2bov_A RAla, RAS-related prote 95.9 0.004 1.4E-07 53.6 3.1 23 124-146 16-38 (206)
452 1m7b_A RND3/RHOE small GTP-bin 95.9 0.0041 1.4E-07 52.9 3.1 23 124-146 9-31 (184)
453 1yrb_A ATP(GTP)binding protein 95.9 0.0072 2.5E-07 54.6 4.8 37 122-160 14-50 (262)
454 2gf0_A GTP-binding protein DI- 95.9 0.0043 1.5E-07 53.2 3.1 22 124-145 10-31 (199)
455 2fg5_A RAB-22B, RAS-related pr 95.9 0.0043 1.5E-07 53.3 3.1 23 124-146 25-47 (192)
456 3iby_A Ferrous iron transport 95.9 0.004 1.4E-07 56.9 3.1 23 124-146 3-25 (256)
457 3tkl_A RAS-related protein RAB 95.9 0.0043 1.5E-07 53.0 3.1 23 124-146 18-40 (196)
458 2gf9_A RAS-related protein RAB 95.9 0.0043 1.5E-07 53.0 3.1 23 124-146 24-46 (189)
459 1g5t_A COB(I)alamin adenosyltr 95.9 0.033 1.1E-06 48.9 8.8 35 122-157 28-62 (196)
460 3kkq_A RAS-related protein M-R 95.9 0.0044 1.5E-07 52.4 3.1 23 124-146 20-42 (183)
461 4hlc_A DTMP kinase, thymidylat 95.8 0.0071 2.4E-07 53.5 4.5 37 122-160 2-38 (205)
462 3zvl_A Bifunctional polynucleo 95.8 0.0048 1.6E-07 60.5 3.8 26 121-146 257-282 (416)
463 2xtp_A GTPase IMAP family memb 95.8 0.0046 1.6E-07 56.1 3.4 24 123-146 23-46 (260)
464 3v9p_A DTMP kinase, thymidylat 95.8 0.0032 1.1E-07 56.8 2.2 30 119-148 22-51 (227)
465 2h92_A Cytidylate kinase; ross 95.8 0.0044 1.5E-07 54.5 3.2 26 122-147 3-28 (219)
466 1mh1_A RAC1; GTP-binding, GTPa 95.8 0.0046 1.6E-07 52.1 3.1 22 124-145 7-28 (186)
467 1g41_A Heat shock protein HSLU 95.8 0.0046 1.6E-07 61.2 3.5 26 123-148 51-76 (444)
468 3exa_A TRNA delta(2)-isopenten 95.8 0.0053 1.8E-07 58.1 3.7 26 122-147 3-28 (322)
469 1a7j_A Phosphoribulokinase; tr 95.8 0.0022 7.6E-08 59.9 1.1 36 122-158 5-40 (290)
470 1ksh_A ARF-like protein 2; sma 95.8 0.0042 1.4E-07 52.7 2.8 24 123-146 19-42 (186)
471 3t5g_A GTP-binding protein RHE 95.8 0.0048 1.6E-07 52.0 3.1 22 124-145 8-29 (181)
472 1wf3_A GTP-binding protein; GT 95.8 0.0046 1.6E-07 58.0 3.2 24 123-146 8-31 (301)
473 2ocp_A DGK, deoxyguanosine kin 95.8 0.0053 1.8E-07 55.2 3.5 26 122-147 2-27 (241)
474 3ihw_A Centg3; RAS, centaurin, 95.8 0.005 1.7E-07 52.7 3.2 22 124-145 22-43 (184)
475 3oes_A GTPase rhebl1; small GT 95.8 0.0048 1.7E-07 53.4 3.1 23 124-146 26-48 (201)
476 1zbd_A Rabphilin-3A; G protein 95.8 0.005 1.7E-07 53.2 3.1 23 124-146 10-32 (203)
477 1z06_A RAS-related protein RAB 95.7 0.0052 1.8E-07 52.4 3.2 23 124-146 22-44 (189)
478 2a5y_B CED-4; apoptosis; HET: 95.7 0.035 1.2E-06 56.2 9.8 129 104-238 131-278 (549)
479 3dz8_A RAS-related protein RAB 95.7 0.0051 1.8E-07 52.7 3.1 23 124-146 25-47 (191)
480 3tmk_A Thymidylate kinase; pho 95.7 0.0058 2E-07 54.6 3.5 29 120-148 3-31 (216)
481 1x3s_A RAS-related protein RAB 95.7 0.0052 1.8E-07 52.3 3.1 23 124-146 17-39 (195)
482 2bcg_Y Protein YP2, GTP-bindin 95.7 0.0051 1.8E-07 53.3 3.1 23 124-146 10-32 (206)
483 3bwd_D RAC-like GTP-binding pr 95.7 0.0054 1.9E-07 51.6 3.1 23 124-146 10-32 (182)
484 2a5j_A RAS-related protein RAB 95.7 0.0054 1.8E-07 52.5 3.1 23 124-146 23-45 (191)
485 3tqf_A HPR(Ser) kinase; transf 95.7 0.006 2E-07 52.7 3.3 25 120-144 14-38 (181)
486 3a1s_A Iron(II) transport prot 95.7 0.0054 1.8E-07 56.1 3.2 23 124-146 7-29 (258)
487 2hjg_A GTP-binding protein ENG 95.7 0.032 1.1E-06 54.9 8.9 23 124-146 177-199 (436)
488 1zd9_A ADP-ribosylation factor 95.7 0.0057 1.9E-07 52.3 3.1 23 124-146 24-46 (188)
489 2atv_A RERG, RAS-like estrogen 95.7 0.0058 2E-07 52.6 3.2 23 124-146 30-52 (196)
490 1zj6_A ADP-ribosylation factor 95.7 0.0057 2E-07 52.1 3.1 23 122-144 16-38 (187)
491 2p5s_A RAS and EF-hand domain 95.7 0.0057 1.9E-07 52.8 3.1 23 124-146 30-52 (199)
492 3cph_A RAS-related protein SEC 95.7 0.0057 2E-07 53.0 3.1 23 124-146 22-44 (213)
493 1jwy_B Dynamin A GTPase domain 95.6 0.0054 1.8E-07 57.2 3.1 23 124-146 26-48 (315)
494 2o52_A RAS-related protein RAB 95.6 0.0056 1.9E-07 53.0 3.0 23 124-146 27-49 (200)
495 2qag_A Septin-2, protein NEDD5 95.6 0.004 1.4E-07 59.9 2.3 22 125-146 40-61 (361)
496 2dby_A GTP-binding protein; GD 95.6 0.0056 1.9E-07 59.2 3.1 22 125-146 4-25 (368)
497 3reg_A RHO-like small GTPase; 95.6 0.0062 2.1E-07 52.2 3.1 23 124-146 25-47 (194)
498 3cbq_A GTP-binding protein REM 95.6 0.0042 1.4E-07 53.8 2.0 23 124-146 25-47 (195)
499 3i8s_A Ferrous iron transport 95.6 0.0064 2.2E-07 56.0 3.4 23 124-146 5-27 (274)
500 2h17_A ADP-ribosylation factor 95.6 0.0053 1.8E-07 52.1 2.6 22 124-145 23-44 (181)
No 1
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.97 E-value=8.2e-32 Score=263.36 Aligned_cols=171 Identities=19% Similarity=0.195 Sum_probs=137.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||||+|+|++.|+.| +.|.++.+.
T Consensus 6 ~~~l~~~yg~~~~--L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~ 83 (381)
T 3rlf_A 6 LQNVTKAWGEVVV--SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS 83 (381)
T ss_dssp EEEEEEEETTEEE--EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTT
T ss_pred EEeEEEEECCEEE--EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecC
Confidence 6799999998776 9999999999999999999999999999999999998732 345666665
Q ss_pred CcccCCCC-------------Cchhhh----h-----------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 161 NEIGGDGD-------------IPHSAI----G-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 161 ~ei~~~~~-------------~~~~~~----~-----------~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
..+..... .+.... . ..++...+|+||+||++||+||+.+|++||+|||+++
T Consensus 84 ~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~ 163 (381)
T 3rlf_A 84 YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (381)
T ss_dssp CCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcC
Confidence 43321101 111000 0 0134556899999999999999999999999999999
Q ss_pred HHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchHH
Q 017797 213 AEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKS 271 (365)
Q Consensus 213 ~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~~ 271 (365)
+|. +.++.+.+ .|.|+|++||+++++..+||+++ +|++|++++.|++++++..+...
T Consensus 164 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~--vl~~G~i~~~g~~~~l~~~p~~~ 228 (381)
T 3rlf_A 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIV--VLDAGRVAQVGKPLELYHYPADR 228 (381)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHCCSBH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEEeCHHHHHhCCccH
Confidence 995 34555544 49999999999999999999999 99999999999999998765433
No 2
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.97 E-value=2e-30 Score=252.41 Aligned_cols=224 Identities=16% Similarity=0.170 Sum_probs=173.2
Q ss_pred HHHHhcccCCCCeEEEEEecCCceEEEEeCccCceecCCCCCCHHHHHHHHHHHh----------ccCCCeeeEecCc-e
Q 017797 16 RDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVG----------EFGGDNRAGIEGT-L 84 (365)
Q Consensus 16 ~~~l~~~~~~~~~~ei~l~~g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~~----------~~~~~~~~~~~g~-~ 84 (365)
.+.|..+.. .++||||+.+|.||.+|++|.+. .....+++.+++..++..+. .-..|+++.+++. +
T Consensus 4 ~~ll~~a~~-~~aSDIhi~~~~~~~~ri~G~l~--~~~~~~~~~~~l~~~i~~i~~~~~~~~~~~~~~~d~~~~~~~~~r 80 (356)
T 3jvv_A 4 TELLAFSAK-QGASDLHLSAGLPPMIRVDGDVR--RINLPPLEHKQVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVAR 80 (356)
T ss_dssp HHHHHHHHH-TTCSEEEEETTBCCEEEETTEEE--ECSSCCBCHHHHHHHHHHHCCHHHHHHHHHHSCEEEEEEETTTEE
T ss_pred HHHHHHHHH-CCCceEEEECCCCEEEEECCEEE--EecCCCCCHHHHHHHHHHHhcHhhhhhhhhcCCeeEEEEcCCCcE
Confidence 344444333 68999999999999999999875 55566789999998876541 1257788888765 8
Q ss_pred EEEEEEEecCCceeeEEEEECCcccCcchhhhh-------cccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEE
Q 017797 85 HRISAIRSRKGAIVGLTCRVGRAVSGHIDMVYD-------LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (365)
Q Consensus 85 ~rv~~~~~~~~~i~~l~~r~~~~~~~~~~~l~~-------~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i 157 (365)
+|+|.+...+|. ++++|+.......++.+.+ ...+|++++|+|||||||||||++|+|+++++.++++.++
T Consensus 81 ~Rv~~~~~~~g~--~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 81 FRVNAFNQNRGA--GAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI 158 (356)
T ss_dssp EEEEEEEETTEE--EEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred EEEEEEeeCCCc--EEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc
Confidence 999999999988 9999997665434455443 4567889999999999999999999999998767899999
Q ss_pred cCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcCcch
Q 017797 158 DTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWL 237 (365)
Q Consensus 158 ~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~~~~ 237 (365)
+++.++...... ....+..+.........+++++|+++||+|++|||++.+.++.+.+++++|++|++|+|+.+.
T Consensus 159 ed~~e~~~~~~~-----~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 159 EDPIEFVHESKK-----CLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSA 233 (356)
T ss_dssp ESSCCSCCCCSS-----SEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSSH
T ss_pred cCcHHhhhhccc-----cceeeeeeccccCCHHHHHHHHhhhCcCEEecCCCCCHHHHHHHHHHHhcCCEEEEEEccChH
Confidence 988876432110 001112222233445569999999999999999999988888888889999999999999998
Q ss_pred hHHhhhHHHHHHHcC
Q 017797 238 ENIIKNPILSDLIGG 252 (365)
Q Consensus 238 ~~~~~d~i~~~ll~~ 252 (365)
+ ..+++++ .+..
T Consensus 234 ~-~~~dRli--~l~~ 245 (356)
T 3jvv_A 234 A-KTIDRVV--DVFP 245 (356)
T ss_dssp H-HHHHHHH--HTSC
T ss_pred H-HHHHHHh--hhcC
Confidence 7 6789998 5543
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.97 E-value=1e-31 Score=260.86 Aligned_cols=169 Identities=15% Similarity=0.114 Sum_probs=133.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------------CeEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--------------------KRVVI 156 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~--------------------~~i~~ 156 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||||+|+|++.|+.| ++|.+
T Consensus 7 i~~ls~~y~~~~~--L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~ 84 (359)
T 3fvq_A 7 IGHLSKSFQNTPV--LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGY 84 (359)
T ss_dssp EEEEEEEETTEEE--EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEE
T ss_pred EEeEEEEECCEEE--EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEE
Confidence 7799999998776 9999999999999999999999999999999999988732 22444
Q ss_pred EcCCCcccCCC-------------CCchhh----hh-----------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcC
Q 017797 157 VDTSNEIGGDG-------------DIPHSA----IG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (365)
Q Consensus 157 i~~~~ei~~~~-------------~~~~~~----~~-----------~~~~~~~~S~g~~~r~~la~al~~~P~vlilDE 208 (365)
+++...+.... ..+... +. ..++...+|+||+||++||+||+.+|++||+||
T Consensus 85 vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDE 164 (359)
T 3fvq_A 85 LVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDE 164 (359)
T ss_dssp ECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 44433221100 001000 00 013455689999999999999999999999999
Q ss_pred CCcHHHHH-------HHHHH-HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 209 IGTEAEAH-------ACRSI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 209 p~~~~d~~-------~i~~~-~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
|++++|.. .+..+ .+.|.|+|++||+++++..+||+++ +|++|++++.|++++++..+.
T Consensus 165 Pts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~--vl~~G~i~~~g~~~el~~~p~ 231 (359)
T 3fvq_A 165 PFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIA--VMKQGRILQTASPHELYRQPA 231 (359)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHSCS
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEE--EEECCEEEEEeCHHHHHhCcc
Confidence 99999952 23333 4569999999999999999999999 999999999999999987643
No 4
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.97 E-value=1.1e-31 Score=261.03 Aligned_cols=171 Identities=12% Similarity=0.149 Sum_probs=135.3
Q ss_pred eeeEEEEECCc--ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------------Ce
Q 017797 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------------KR 153 (365)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~---------------------~~ 153 (365)
+++++++|+.. ...+++++++.+++|++++|+||||||||||+|+|+|++.|+.| ++
T Consensus 27 v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~ 106 (366)
T 3tui_C 27 LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQ 106 (366)
T ss_dssp EEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTT
T ss_pred EEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCc
Confidence 77999999642 12349999999999999999999999999999999999998732 24
Q ss_pred EEEEcCCCcccCCCC-------------Cchhh----h-------h----hhhhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 154 VVIVDTSNEIGGDGD-------------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 154 i~~i~~~~ei~~~~~-------------~~~~~----~-------~----~~~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
|+++++...+..... .+... + + ..++...+|+||+||++||+||+++|++||
T Consensus 107 Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLL 186 (366)
T 3tui_C 107 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL 186 (366)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEE
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 666666543322111 11100 0 0 013355689999999999999999999999
Q ss_pred EcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 206 VDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 206 lDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
+||||+++|+ +.++++.+ .|.|||++||+++++..+||+++ +|++|++++.|++++++..+.
T Consensus 187 lDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~--vl~~G~iv~~g~~~ev~~~p~ 256 (366)
T 3tui_C 187 CDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVA--VISNGELIEQDTVSEVFSHPK 256 (366)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEE--EEETTEEEECCBHHHHHSSCC
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCCC
Confidence 9999999995 45566654 49999999999999999999999 999999999999999987643
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.97 E-value=1.4e-31 Score=251.87 Aligned_cols=167 Identities=15% Similarity=0.225 Sum_probs=132.4
Q ss_pred eeeEEEEECCcc-cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------------CeEE
Q 017797 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--------------------KRVV 155 (365)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~--------------------~~i~ 155 (365)
+++++++|+... + ++++++.+++|++++|+||||||||||+++|+|+++|+.| ++|.
T Consensus 10 i~~ls~~y~~~~~~--L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig 87 (275)
T 3gfo_A 10 VEELNYNYSDGTHA--LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIG 87 (275)
T ss_dssp EEEEEEECTTSCEE--EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEE
T ss_pred EEEEEEEECCCCeE--EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEE
Confidence 779999997543 5 9999999999999999999999999999999999988732 1355
Q ss_pred EEcCCCc--ccCC------------CCCchhh----hh-----------hhhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 156 IVDTSNE--IGGD------------GDIPHSA----IG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 156 ~i~~~~e--i~~~------------~~~~~~~----~~-----------~~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
++++... +... ...+... +. ..+....+|+||+||+++|+||+++|++||+
T Consensus 88 ~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlL 167 (275)
T 3gfo_A 88 IVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLIL 167 (275)
T ss_dssp EECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 6655432 1100 0111110 00 0133456799999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHH-HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 207 DEIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
||||+++|+ +.++++. +.|.|||++||+++++..+||+++ ++++|++++.|++++++..
T Consensus 168 DEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~--~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 168 DEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVF--VMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEE--EEETTEEEEEECHHHHTHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEECCHHHHhcC
Confidence 999999995 4456665 569999999999999999999999 9999999999999998764
No 6
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.97 E-value=3.9e-31 Score=247.88 Aligned_cols=166 Identities=19% Similarity=0.241 Sum_probs=131.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------eEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------~i~~i~ 158 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.|. .+.++.
T Consensus 14 ~~~l~~~~~~~~v--L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~ 91 (266)
T 4g1u_C 14 ASHLHYHVQQQAL--INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMR 91 (266)
T ss_dssp EEEEEEEETTEEE--EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred EEeEEEEeCCeeE--EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEe
Confidence 6799999998777 99999999999999999999999999999999999987421 234444
Q ss_pred CCCcccCCCCC-----------chh----hhh-----------hhhhccCCCcchhHHHHHHHHHhh------CCCEEEE
Q 017797 159 TSNEIGGDGDI-----------PHS----AIG-----------TARRMQVPEPSLQHKVMIEAVENH------MPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~~~~-----------~~~----~~~-----------~~~~~~~~S~g~~~r~~la~al~~------~P~vlil 206 (365)
+...+.+...+ ... .+. ..+....+|+||+||+++|+||++ +|++||+
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLll 171 (266)
T 4g1u_C 92 QYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFL 171 (266)
T ss_dssp SCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEE
T ss_pred cCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEE
Confidence 43332211000 000 000 013345689999999999999999 9999999
Q ss_pred cCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 207 DEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||||+++|+ +.++++.++ |+|||++||+++++..+||+++ ++++|++++.|++++++.
T Consensus 172 DEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~--vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 172 DEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIM--LLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEE--EEETTEEEEEECHHHHCC
T ss_pred eCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEE--EEECCEEEEEcCHHHHhC
Confidence 999999995 445566555 5799999999999999999999 999999999999998864
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.97 E-value=5.5e-31 Score=246.41 Aligned_cols=167 Identities=15% Similarity=0.194 Sum_probs=132.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------------CeEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--------------------KRVVI 156 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~--------------------~~i~~ 156 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| +++.+
T Consensus 27 i~~l~~~y~~~~v--L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~ 104 (263)
T 2olj_A 27 VHQLKKSFGSLEV--LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGM 104 (263)
T ss_dssp EEEEEEEETTEEE--EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEE
T ss_pred EEeEEEEECCEEE--EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEE
Confidence 7899999987666 9999999999999999999999999999999999988721 12455
Q ss_pred EcCCCcccCCC--------------CCchh----hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 157 VDTSNEIGGDG--------------DIPHS----AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 157 i~~~~ei~~~~--------------~~~~~----~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
+++...+.... ..+.. .+.. .+....+|+||+||+++|+||+.+|++||+|
T Consensus 105 v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLD 184 (263)
T 2olj_A 105 VFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFD 184 (263)
T ss_dssp ECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 55543221110 01100 0000 0234467999999999999999999999999
Q ss_pred CCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 208 EIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 208 Ep~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|||+++|+ +.++++.++|.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 185 EPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 185 EPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVL--FMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHS
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhC
Confidence 99999995 4566666679999999999999999999999 9999999999999988754
No 8
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.97 E-value=7.8e-31 Score=255.19 Aligned_cols=169 Identities=17% Similarity=0.210 Sum_probs=135.0
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||||+|+|++.|+.| +++.++++.
T Consensus 6 ~~~l~~~y~~~~v--l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (359)
T 2yyz_A 6 VVNLKKYFGKVKA--VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQN 83 (359)
T ss_dssp EEEEEEEETTEEE--EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSS
T ss_pred EEEEEEEECCEEE--EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecC
Confidence 6799999987666 9999999999999999999999999999999999988732 246666654
Q ss_pred CcccCC-------------CCCchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 161 NEIGGD-------------GDIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 161 ~ei~~~-------------~~~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
..+... ...+... +.. .++...+|+||+||+++|+||+.+|++|++|||+++
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (359)
T 2yyz_A 84 YALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSN 163 (359)
T ss_dssp CCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 433211 0111110 000 133456899999999999999999999999999999
Q ss_pred HHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 213 AEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 213 ~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
+|. +.++++.+ .|.|+|++||+.+++..+||+++ +|++|+++..|++++++..+.
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~--vl~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 164 LDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIA--VFNQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHSCS
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhCcc
Confidence 995 34555544 49999999999999999999999 999999999999999987654
No 9
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=9.8e-31 Score=254.75 Aligned_cols=169 Identities=16% Similarity=0.215 Sum_probs=134.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||||+|+|++.|+.| +++.++++.
T Consensus 6 ~~~l~~~y~~~~v--l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (362)
T 2it1_A 6 LENIVKKFGNFTA--LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQN 83 (362)
T ss_dssp EEEEEEESSSSEE--EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTT
T ss_pred EEeEEEEECCEEE--EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecC
Confidence 6799999987666 9999999999999999999999999999999999988732 235566554
Q ss_pred CcccCCC-------------CCchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 161 NEIGGDG-------------DIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 161 ~ei~~~~-------------~~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
..+.... ..+... +.. .++...+|+||+||+++|+||+.+|++|++|||+++
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (362)
T 2it1_A 84 WALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSN 163 (362)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGG
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 4332110 011100 000 133456799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 213 AEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 213 ~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
+|. +.++++.+ .|.|+|++||+.+++..+||+++ +|++|+++..|++++++..+.
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~--vl~~G~i~~~g~~~~~~~~p~ 226 (362)
T 2it1_A 164 LDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIA--VIREGEILQVGTPDEVYYKPK 226 (362)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHSCS
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCcc
Confidence 995 34555544 49999999999999999999999 999999999999999987653
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=7.8e-31 Score=244.49 Aligned_cols=166 Identities=17% Similarity=0.226 Sum_probs=132.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------CeEEEEcC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----------------KRVVIVDT 159 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----------------~~i~~i~~ 159 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| +++.++++
T Consensus 18 i~~l~~~y~~~~v--l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q 95 (256)
T 1vpl_A 18 VKDLRKRIGKKEI--LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPE 95 (256)
T ss_dssp EEEEEEEETTEEE--EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECT
T ss_pred EEEEEEEECCEEE--EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcC
Confidence 7799999987666 9999999999999999999999999999999999988732 23566665
Q ss_pred CCcccCCC-------------CCchh----hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc
Q 017797 160 SNEIGGDG-------------DIPHS----AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 160 ~~ei~~~~-------------~~~~~----~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~ 211 (365)
...+.... ..+.. .+.. .++...+|+||+||+++|+||+.+|++||+||||+
T Consensus 96 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts 175 (256)
T 1vpl_A 96 EAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTS 175 (256)
T ss_dssp TCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 44332110 01100 0000 13345689999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 212 EAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 212 ~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
++|+ +.+.++.+.|.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 176 ~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 176 GLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIA--LIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEE--EEETTEEEEEEEHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEE--EEECCEEEEecCHHHHHH
Confidence 9995 4556666679999999999999988999999 999999999999988754
No 11
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.97 E-value=7.6e-31 Score=254.77 Aligned_cols=169 Identities=20% Similarity=0.215 Sum_probs=133.5
Q ss_pred eeeEEEEE-CCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcC
Q 017797 97 IVGLTCRV-GRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDT 159 (365)
Q Consensus 97 i~~l~~r~-~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~ 159 (365)
+++++++| +...+ ++++++.+++|++++|+||||||||||||+|+|+++|+.| +++.++++
T Consensus 17 ~~~l~~~y~g~~~v--l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 94 (355)
T 1z47_A 17 FVGVEKIYPGGARS--VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQ 94 (355)
T ss_dssp EEEEEECCTTSTTC--EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECG
T ss_pred EEEEEEEEcCCCEE--EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEec
Confidence 77999999 76655 9999999999999999999999999999999999988732 23555554
Q ss_pred CCcccCCC-------------CCchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc
Q 017797 160 SNEIGGDG-------------DIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 160 ~~ei~~~~-------------~~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~ 211 (365)
...+.... .++... +.. .++...+|+||+||++||+||+.+|++|++|||++
T Consensus 95 ~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 174 (355)
T 1z47_A 95 NYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFA 174 (355)
T ss_dssp GGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTC
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 33221110 111100 000 13345689999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 212 EAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 212 ~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
++|. +.++++.+ .|.|+|++||+.+++..+||+++ +|++|+++..|++++++..+.
T Consensus 175 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~--vl~~G~i~~~g~~~~l~~~p~ 238 (355)
T 1z47_A 175 AIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVL--VLHEGNVEQFGTPEEVYEKPG 238 (355)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHSCS
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCcc
Confidence 9995 34555544 49999999999999999999999 999999999999999987643
No 12
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=1.3e-30 Score=243.78 Aligned_cols=167 Identities=18% Similarity=0.210 Sum_probs=132.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------------ 152 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------------ 152 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.|.
T Consensus 9 i~~l~~~y~~~~v--l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 86 (262)
T 1b0u_A 9 VIDLHKRYGGHEV--LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKN 86 (262)
T ss_dssp EEEEEEEETTEEE--EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHH
T ss_pred EeeEEEEECCEEE--EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChh
Confidence 7799999987666 99999999999999999999999999999999999887321
Q ss_pred -------eEEEEcCCCcccCC--------------CCCchh----hh-------h-----hhhhccCCCcchhHHHHHHH
Q 017797 153 -------RVVIVDTSNEIGGD--------------GDIPHS----AI-------G-----TARRMQVPEPSLQHKVMIEA 195 (365)
Q Consensus 153 -------~i~~i~~~~ei~~~--------------~~~~~~----~~-------~-----~~~~~~~~S~g~~~r~~la~ 195 (365)
++.++++...+... ...+.. .+ + ..+....+|+||+||+++|+
T Consensus 87 ~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAr 166 (262)
T 1b0u_A 87 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIAR 166 (262)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHH
T ss_pred hHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHH
Confidence 24555543322110 001100 00 0 01234468999999999999
Q ss_pred HHhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 196 VENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 196 al~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
||+++|++||+||||+++|+ +.+.++.++|.|||++||+++++..+||+++ ++++|+++..|++++++..
T Consensus 167 aL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~~ 243 (262)
T 1b0u_A 167 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI--FLHQGKIEEEGDPEQVFGN 243 (262)
T ss_dssp HHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHS
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 99999999999999999995 4556666679999999999999999999999 9999999999999988753
No 13
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.96 E-value=1.5e-30 Score=254.38 Aligned_cols=169 Identities=18% Similarity=0.225 Sum_probs=132.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||||+|+|++.|+.| +++.++++.
T Consensus 14 ~~~l~~~y~~~~v--l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 91 (372)
T 1v43_A 14 LENLTKRFGNFTA--VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQS 91 (372)
T ss_dssp EEEEEEEETTEEE--EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred EEEEEEEECCEEE--EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecC
Confidence 6799999987666 9999999999999999999999999999999999988732 235566554
Q ss_pred CcccCC-------------CCCchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 161 NEIGGD-------------GDIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 161 ~ei~~~-------------~~~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
..+... ...+... +.. .++...+|+||+||++||+||+.+|++|++|||+++
T Consensus 92 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 171 (372)
T 1v43_A 92 YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 171 (372)
T ss_dssp -----CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 332110 0111110 000 134556899999999999999999999999999999
Q ss_pred HHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 213 AEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 213 ~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
+|. +.++++.+ .|.|+|++||+.+++..+||+++ +|++|+++..|++++++..+.
T Consensus 172 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~--vl~~G~i~~~g~~~~l~~~p~ 234 (372)
T 1v43_A 172 LDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIA--VMNRGQLLQIGSPTEVYLRPN 234 (372)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHCCS
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhCcc
Confidence 995 34555544 49999999999999999999999 999999999999999987653
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=1.9e-30 Score=239.70 Aligned_cols=166 Identities=14% Similarity=0.152 Sum_probs=132.4
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------CeEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------------~~i~~i 157 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| .++.++
T Consensus 9 ~~~l~~~y~~~~v--l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 86 (240)
T 1ji0_A 9 VQSLHVYYGAIHA--IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV 86 (240)
T ss_dssp EEEEEEEETTEEE--EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEE
T ss_pred EEeEEEEECCeeE--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEE
Confidence 7799999987656 9999999999999999999999999999999999987721 126677
Q ss_pred cCCCcccCC---------C---CCchhh----h--------hh----hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCC
Q 017797 158 DTSNEIGGD---------G---DIPHSA----I--------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (365)
Q Consensus 158 ~~~~ei~~~---------~---~~~~~~----~--------~~----~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp 209 (365)
++...+... . ...... + +. .++...+|+||+||+++|+||+++|++||+|||
T Consensus 87 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP 166 (240)
T 1ji0_A 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP 166 (240)
T ss_dssp CSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred ecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 664432111 0 000000 0 01 123456899999999999999999999999999
Q ss_pred CcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 210 GTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 210 ~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|+++|+ +.++++.+.|.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 167 ts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 167 SLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGY--VLETGQIVLEGKASELLD 228 (240)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEE--EEETTEEEEEEEHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEEcCHHHHhc
Confidence 999995 3455566679999999999998989999999 999999999999988764
No 15
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.96 E-value=2.2e-30 Score=253.36 Aligned_cols=169 Identities=17% Similarity=0.217 Sum_probs=133.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------------CeE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------KRV 154 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------------~~i 154 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||||+|+|++.|+.| +++
T Consensus 6 ~~~l~~~y~~~~v--l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~i 83 (372)
T 1g29_1 6 LVDVWKVFGEVTA--VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI 83 (372)
T ss_dssp EEEEEEEETTEEE--EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSE
T ss_pred EEeEEEEECCEEE--EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCE
Confidence 7799999987666 9999999999999999999999999999999999988732 124
Q ss_pred EEEcCCCcccCCC-------------CCchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 155 VIVDTSNEIGGDG-------------DIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 155 ~~i~~~~ei~~~~-------------~~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
.++++...+.... ..+... +.. .++...+|+||+||+++|+||+.+|++|++
T Consensus 84 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 163 (372)
T 1g29_1 84 AMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLM 163 (372)
T ss_dssp EEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4444433221100 011100 000 133456899999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 207 DEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
|||++++|. +.++++.+ .|.|+|++||+.+++..+||+++ +|++|+++..|++++++..+.
T Consensus 164 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~--vl~~G~i~~~g~~~~l~~~p~ 232 (372)
T 1g29_1 164 DEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIA--VMNRGVLQQVGSPDEVYDKPA 232 (372)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHSCS
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEE--EEeCCEEEEeCCHHHHHhCcc
Confidence 999999995 34555544 49999999999999999999999 999999999999999987654
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.96 E-value=1.5e-30 Score=253.00 Aligned_cols=169 Identities=17% Similarity=0.163 Sum_probs=133.2
Q ss_pred eeeEEEEECCcc--cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------------Ce
Q 017797 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------------KR 153 (365)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~---------------------~~ 153 (365)
+++++++|+... + ++++++.+++|++++|+||||||||||||+|+|++.|+.| ++
T Consensus 6 i~~l~~~y~~~~~~v--l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ 83 (353)
T 1oxx_K 6 VKNVSKVFKKGKVVA--LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRK 83 (353)
T ss_dssp EEEEEEEEGGGTEEE--EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSC
T ss_pred EEeEEEEECCEeeee--EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCC
Confidence 679999998765 5 9999999999999999999999999999999999988732 12
Q ss_pred EEEEcCCCcccCC-------------CCCchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 154 VVIVDTSNEIGGD-------------GDIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 154 i~~i~~~~ei~~~-------------~~~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
+.++++...+... ...+... +.. .++...+|+||+||+++|+||+.+|++|+
T Consensus 84 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLL 163 (353)
T 1oxx_K 84 IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLL 163 (353)
T ss_dssp EEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 4445443322110 0111100 000 13345689999999999999999999999
Q ss_pred EcCCCcHHHH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 206 VDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 206 lDEp~~~~d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
+|||++++|. +.++++.+ .|.|+|++||+.+++..+||+++ +|++|+++..|++++++..+.
T Consensus 164 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~--vl~~G~i~~~g~~~~l~~~p~ 233 (353)
T 1oxx_K 164 LDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVG--VLVKGKLVQVGKPEDLYDNPV 233 (353)
T ss_dssp EESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHSCS
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCcc
Confidence 9999999994 45555544 49999999999999999999999 999999999999999987643
No 17
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.96 E-value=1.4e-30 Score=238.23 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=124.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------------CeE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------KRV 154 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------------~~i 154 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| .++
T Consensus 7 ~~~l~~~y~~~~~--l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 84 (224)
T 2pcj_A 7 AENIKKVIRGYEI--LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKL 84 (224)
T ss_dssp EEEEEEEETTEEE--EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHE
T ss_pred EEeEEEEECCEee--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcE
Confidence 7799999987656 9999999999999999999999999999999999988721 125
Q ss_pred EEEcCCCcccCCC-------------CCchhh----hhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 155 VIVDTSNEIGGDG-------------DIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 155 ~~i~~~~ei~~~~-------------~~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
.++++...+.... ..+... +.. .+....+|+||+||+++|+|++++|++|++
T Consensus 85 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 164 (224)
T 2pcj_A 85 GFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFA 164 (224)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 5555543322110 011000 000 023446799999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecC
Q 017797 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~ 260 (365)
||||+++|. +.+.++.++|.|||++||+.+++ .+||+++ ++++|+++..|+
T Consensus 165 DEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~--~l~~G~i~~~g~ 222 (224)
T 2pcj_A 165 DEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTL--EMKDGKVVGEIT 222 (224)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEE--EEETTEEEEEEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEE--EEECCEEEEEee
Confidence 999999995 45566666699999999999887 7899999 999999998764
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.96 E-value=1.8e-30 Score=242.26 Aligned_cols=163 Identities=15% Similarity=0.115 Sum_probs=129.7
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------CeEEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------------~~i~~i 157 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| ..+.++
T Consensus 10 i~~l~~~y~~~~v--l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (257)
T 1g6h_A 10 TENIVKYFGEFKA--LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRT 87 (257)
T ss_dssp EEEEEEEETTEEE--EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEEC
T ss_pred EeeeEEEECCEee--EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 7799999987666 9999999999999999999999999999999999988732 125555
Q ss_pred cCCCcccCC------------C---C-----------Cchhh----hhh-----------hhhccCCCcchhHHHHHHHH
Q 017797 158 DTSNEIGGD------------G---D-----------IPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAV 196 (365)
Q Consensus 158 ~~~~ei~~~------------~---~-----------~~~~~----~~~-----------~~~~~~~S~g~~~r~~la~a 196 (365)
++...+... . . ..... +.. .+....+|+||+||+++|+|
T Consensus 88 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAra 167 (257)
T 1g6h_A 88 FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRA 167 (257)
T ss_dssp CCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred ccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHH
Confidence 554322110 0 0 00000 000 12344679999999999999
Q ss_pred HhhCCCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHH
Q 017797 197 ENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 263 (365)
Q Consensus 197 l~~~P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~ 263 (365)
++++|++||+||||+++|+ +.+++++++|.|||++||+.+++..+||+++ ++++|+++..|++++
T Consensus 168 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 168 LMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLY--VMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEE--EEETTEEEEEEESHH
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEEeCHHH
Confidence 9999999999999999995 4556666679999999999999988999999 999999999999888
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.96 E-value=1.6e-30 Score=252.14 Aligned_cols=168 Identities=14% Similarity=0.173 Sum_probs=132.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------~~i~~i~~~ 160 (365)
+++++++|+.. + ++++++.+++|++++|+||||||||||||+|+|++.|+.| +++.++++.
T Consensus 4 ~~~l~~~y~~~-~--l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 80 (348)
T 3d31_A 4 IESLSRKWKNF-S--LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQN 80 (348)
T ss_dssp EEEEEEECSSC-E--EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred EEEEEEEECCE-E--EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecC
Confidence 67999999876 5 9999999999999999999999999999999999998732 124455544
Q ss_pred CcccCCCCC-------------ch-hhhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH
Q 017797 161 NEIGGDGDI-------------PH-SAIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (365)
Q Consensus 161 ~ei~~~~~~-------------~~-~~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~ 215 (365)
..+.....+ +. ..+.. .++...+|+||+||+++|+||+.+|++|++|||++++|.
T Consensus 81 ~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~ 160 (348)
T 3d31_A 81 YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160 (348)
T ss_dssp CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH
T ss_pred cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 322111000 00 00000 133456799999999999999999999999999999995
Q ss_pred -------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhch
Q 017797 216 -------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (365)
Q Consensus 216 -------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~ 269 (365)
+.++++.+ .|.|+|++||+.+++..+||+++ +|++|+++..|++++++..+.
T Consensus 161 ~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~--vl~~G~i~~~g~~~~~~~~p~ 220 (348)
T 3d31_A 161 RTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIA--VVMDGKLIQVGKPEEIFEKPV 220 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEE--EESSSCEEEEECHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhCcc
Confidence 34555544 49999999999999999999999 999999999999999987543
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.96 E-value=1.7e-30 Score=239.37 Aligned_cols=165 Identities=12% Similarity=0.082 Sum_probs=126.4
Q ss_pred eeeEEEEECCcc--cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------------C
Q 017797 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------K 152 (365)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~----------------------~ 152 (365)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+++|+.| .
T Consensus 4 ~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 83 (235)
T 3tif_A 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRD 83 (235)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred EEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhc
Confidence 679999997432 1249999999999999999999999999999999999988732 1
Q ss_pred eEEEEcCCCcccCCC----------------CCchhh----h-------hh-----hhhccCCCcchhHHHHHHHHHhhC
Q 017797 153 RVVIVDTSNEIGGDG----------------DIPHSA----I-------GT-----ARRMQVPEPSLQHKVMIEAVENHM 200 (365)
Q Consensus 153 ~i~~i~~~~ei~~~~----------------~~~~~~----~-------~~-----~~~~~~~S~g~~~r~~la~al~~~ 200 (365)
++.++++...+.... ..+... + +. .+....+|+||+||+++|+||+++
T Consensus 84 ~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~ 163 (235)
T 3tif_A 84 KIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANN 163 (235)
T ss_dssp HEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 367776654432110 111100 0 00 123456899999999999999999
Q ss_pred CCEEEEcCCCcHHHH-------HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 201 PEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 201 P~vlilDEp~~~~d~-------~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
|++||+||||+++|+ +.+.++.++ |.|||++||+++.+ .+||+++ ++++|+++..++++++
T Consensus 164 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~--~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 164 PPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERII--YLKDGEVEREEKLRGF 232 (235)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEE--EEETTEEEEEEECC--
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEE--EEECCEEEEEcChhhh
Confidence 999999999999995 345566554 99999999999865 6899999 9999999998877654
No 21
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.96 E-value=8.2e-30 Score=237.23 Aligned_cols=165 Identities=14% Similarity=0.126 Sum_probs=132.7
Q ss_pred eeeEEEEEC-CcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCCcccCC----
Q 017797 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD---- 166 (365)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----~~i~~i~~~~ei~~~---- 166 (365)
+++++++|+ ...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| +++.++++...+...
T Consensus 7 i~~l~~~y~~~~~v--l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 7 VENLGFYYQAENFL--FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp EEEEEEEETTTTEE--EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHH
T ss_pred EeeEEEEeCCCCeE--EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHH
Confidence 779999998 6555 9999999999999999999999999999999999998743 357888876543211
Q ss_pred -----CCC---------chh---hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH---
Q 017797 167 -----GDI---------PHS---AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA--- 215 (365)
Q Consensus 167 -----~~~---------~~~---~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~--- 215 (365)
... ... .+.. .+....+|+||+||+++|+||+++|++||+||||+++|+
T Consensus 85 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~ 164 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164 (253)
T ss_dssp HHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHH
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 000 000 0000 123456899999999999999999999999999999995
Q ss_pred ----HHHHHHHHc-CcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 216 ----HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 216 ----~~i~~~~~~-G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+.+..+.++ |.|||++||+.+++..+||+++ ++++|+ +..|+++++..
T Consensus 165 ~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~--~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 165 DIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTL--LLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEE--EEETTE-EEEEEHHHHCC
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEeCCe-EecCCHHHHhC
Confidence 345555555 9999999999999989999999 999999 99999888753
No 22
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.96 E-value=7.6e-30 Score=235.65 Aligned_cols=163 Identities=14% Similarity=0.130 Sum_probs=125.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE-----------------EEcC
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-----------------IVDT 159 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~-----------------~i~~ 159 (365)
+++++++|+. . ++++++.+++ ++++|+||||||||||+++|+|+++|+. +.|. ++++
T Consensus 4 ~~~l~~~y~~--~--l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 4 KVRAEKRLGN--F--RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDR-GEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp EEEEEEEETT--E--EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSE-EEEEETTEECTTSCTTTSCCBCCCS
T ss_pred EEEEEEEeCC--E--EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCEECCcCchhhCcEEEEcC
Confidence 6799999975 3 8999999999 9999999999999999999999998873 3333 2322
Q ss_pred CCcccCC---------C-CC---ch--hhhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHH
Q 017797 160 SNEIGGD---------G-DI---PH--SAIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (365)
Q Consensus 160 ~~ei~~~---------~-~~---~~--~~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~ 213 (365)
...+... . .. +. ..+.. .+....+|+||+||+++|+|++++|++|++||||+++
T Consensus 78 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~L 157 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAV 157 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSC
T ss_pred CCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 2211100 0 00 00 00000 0234457999999999999999999999999999999
Q ss_pred HH-------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 214 EA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 214 d~-------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|+ +.+.++.+ .|.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 158 D~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 158 DLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVA--VMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhC
Confidence 95 34555544 49999999999999999999999 9999999999999988653
No 23
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.95 E-value=3.1e-29 Score=232.58 Aligned_cols=165 Identities=19% Similarity=0.235 Sum_probs=127.9
Q ss_pred eeeEEEEE--CCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEE
Q 017797 97 IVGLTCRV--GRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVI 156 (365)
Q Consensus 97 i~~l~~r~--~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~ 156 (365)
+++++++| +...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| ..+.+
T Consensus 10 ~~~l~~~y~~~~~~v--l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~ 87 (247)
T 2ff7_A 10 FRNIRFRYKPDSPVI--LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 87 (247)
T ss_dssp EEEEEEESSTTSCEE--EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred EEEEEEEeCCCCcce--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEE
Confidence 67999999 34445 9999999999999999999999999999999999988732 13566
Q ss_pred EcCCCcccCC--------C--CCchhhh-------hh---hh------------hccCCCcchhHHHHHHHHHhhCCCEE
Q 017797 157 VDTSNEIGGD--------G--DIPHSAI-------GT---AR------------RMQVPEPSLQHKVMIEAVENHMPEVI 204 (365)
Q Consensus 157 i~~~~ei~~~--------~--~~~~~~~-------~~---~~------------~~~~~S~g~~~r~~la~al~~~P~vl 204 (365)
+++...+... . ......+ +. .. +...+|+||+||+++|+||+++|++|
T Consensus 88 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ll 167 (247)
T 2ff7_A 88 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 167 (247)
T ss_dssp ECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred EeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 6654433210 0 0111100 00 01 12578999999999999999999999
Q ss_pred EEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 205 IVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 205 ilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|+||||+++|. +.+.++ .+|.|||++||+++.+. .||+++ ++++|+++..|++++++..
T Consensus 168 lLDEPts~LD~~~~~~i~~~l~~~-~~g~tviivtH~~~~~~-~~d~v~--~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 168 IFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHRLSTVK-NADRII--VMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp EECCCCSCCCHHHHHHHHHHHHHH-HTTSEEEEECSSGGGGT-TSSEEE--EEETTEEEEEECHHHHHTS
T ss_pred EEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEeCCHHHHH-hCCEEE--EEECCEEEEECCHHHHHhC
Confidence 99999999995 345555 35999999999999886 499999 9999999999999887653
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.95 E-value=1.2e-29 Score=239.35 Aligned_cols=166 Identities=16% Similarity=0.109 Sum_probs=129.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------------CeEEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--------------------KRVVI 156 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~--------------------~~i~~ 156 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+|+|+|+++|+.| +++.+
T Consensus 24 ~~~l~~~y~~~~v--L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~ 101 (279)
T 2ihy_A 24 LDQIGRMKQGKTI--LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGF 101 (279)
T ss_dssp EEEEEEEETTEEE--EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEE
T ss_pred EEeEEEEECCEEE--EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEE
Confidence 7799999987666 9999999999999999999999999999999999988731 12444
Q ss_pred EcCCCcccCC-----------CCC---------chh---hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCC
Q 017797 157 VDTSNEIGGD-----------GDI---------PHS---AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPE 202 (365)
Q Consensus 157 i~~~~ei~~~-----------~~~---------~~~---~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~ 202 (365)
+++...+.+. ... ... .+.. .++...+|+||+||+++|+||+.+|+
T Consensus 102 v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 181 (279)
T 2ihy_A 102 VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQ 181 (279)
T ss_dssp ECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred EEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 4432111000 000 000 0000 12345679999999999999999999
Q ss_pred EEEEcCCCcHHHH-------HHHHHHHHcCcEE--EEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 203 VIIVDEIGTEAEA-------HACRSIAERGVML--IGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 203 vlilDEp~~~~d~-------~~i~~~~~~G~tV--i~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+||+||||+++|. +.++++.++|.|| |++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 182 lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 182 VLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKIL--LLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEE--EEETTEEEEEEEHHHHCS
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEE--EEECCEEEEECCHHHHhc
Confidence 9999999999995 4455565569999 999999999888999999 999999999999988754
No 25
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.95 E-value=6.5e-29 Score=232.79 Aligned_cols=167 Identities=16% Similarity=0.198 Sum_probs=131.5
Q ss_pred eeeEEEEEC--C---cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------CeEEE
Q 017797 97 IVGLTCRVG--R---AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------KRVVI 156 (365)
Q Consensus 97 i~~l~~r~~--~---~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~---------------~~i~~ 156 (365)
+++++++|+ . ..+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| +++.+
T Consensus 5 ~~~l~~~y~~~~~~~~~v--l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~ 82 (266)
T 2yz2_A 5 VVNVSHIFHRGTPLEKKA--LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 82 (266)
T ss_dssp EEEEEEEESTTSTTCEEE--EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEE
T ss_pred EEEEEEEecCCCccccce--eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEE
Confidence 679999997 3 234 9999999999999999999999999999999999988732 23667
Q ss_pred EcCCC--cccCC----------CC-Cchh----hh-------hh------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 157 VDTSN--EIGGD----------GD-IPHS----AI-------GT------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 157 i~~~~--ei~~~----------~~-~~~~----~~-------~~------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+++.. .+... .. .+.. .+ +. .+....+|+||+||+++|+||+++|++||+
T Consensus 83 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL 162 (266)
T 2yz2_A 83 AFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILIL 162 (266)
T ss_dssp ECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 76653 11110 00 1110 00 00 122346899999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
||||+++|. +.+.++.++|.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 163 DEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 163 DEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVV--VLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEE--EEETTEEEEEEEHHHHHHH
T ss_pred cCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhcC
Confidence 999999995 4455665669999999999999988999999 9999999999999988754
No 26
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.95 E-value=5.8e-29 Score=230.10 Aligned_cols=165 Identities=15% Similarity=0.149 Sum_probs=126.8
Q ss_pred eeeEEEEE-CCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------eEEEE
Q 017797 97 IVGLTCRV-GRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIV 157 (365)
Q Consensus 97 i~~l~~r~-~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------~i~~i 157 (365)
+++++++| +...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.++
T Consensus 4 ~~~l~~~y~~~~~v--l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 4 ARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEECSSSSSCS--EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEeCCCCce--EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 67899999 44445 99999999999999999999999999999999999887321 23344
Q ss_pred cCCCcccCC--------C---CCchhhhh-------h---h------------hhccCCCcchhHHHHHHHHHhhCCCEE
Q 017797 158 DTSNEIGGD--------G---DIPHSAIG-------T---A------------RRMQVPEPSLQHKVMIEAVENHMPEVI 204 (365)
Q Consensus 158 ~~~~ei~~~--------~---~~~~~~~~-------~---~------------~~~~~~S~g~~~r~~la~al~~~P~vl 204 (365)
++...+... . ......+. . . ++...+|+||+||+++|+|++++|++|
T Consensus 82 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ll 161 (243)
T 1mv5_A 82 SQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL 161 (243)
T ss_dssp CCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred cCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 433222100 0 00111010 0 0 122468999999999999999999999
Q ss_pred EEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 205 IVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 205 ilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
++||||+++|. +.+..+. .|.|||++||+.+.+. .||+++ ++++|+++..|+++++...
T Consensus 162 lLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~--~l~~G~i~~~g~~~~~~~~ 227 (243)
T 1mv5_A 162 MLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKIY--FIEKGQITGSGKHNELVAT 227 (243)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEE--EEETTEECCCSCHHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHH-hCCEEE--EEECCEEEEeCCHHHHHhc
Confidence 99999999993 5566665 6999999999999875 599999 9999999999999988653
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.95 E-value=5.6e-29 Score=233.86 Aligned_cols=166 Identities=16% Similarity=0.140 Sum_probs=128.4
Q ss_pred eeeEEEEECC---cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEE
Q 017797 97 IVGLTCRVGR---AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVV 155 (365)
Q Consensus 97 i~~l~~r~~~---~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~ 155 (365)
+++++++|+. ..+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| .+|.
T Consensus 19 ~~~l~~~y~~~~~~~v--l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 96 (271)
T 2ixe_A 19 FQDVSFAYPNHPNVQV--LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVA 96 (271)
T ss_dssp EEEEEECCTTCTTSCC--EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEE
T ss_pred EEEEEEEeCCCCCcee--eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEE
Confidence 6789999975 344 9999999999999999999999999999999999988732 1366
Q ss_pred EEcCCCcccCC----------CCCch-hhh------------------hh----hhhccCCCcchhHHHHHHHHHhhCCC
Q 017797 156 IVDTSNEIGGD----------GDIPH-SAI------------------GT----ARRMQVPEPSLQHKVMIEAVENHMPE 202 (365)
Q Consensus 156 ~i~~~~ei~~~----------~~~~~-~~~------------------~~----~~~~~~~S~g~~~r~~la~al~~~P~ 202 (365)
|+++...+... ..... ... +. .++...+|+||+||+++|+||+.+|+
T Consensus 97 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ 176 (271)
T 2ixe_A 97 AVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPR 176 (271)
T ss_dssp EECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCS
T ss_pred EEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence 66665433210 00110 000 00 02345689999999999999999999
Q ss_pred EEEEcCCCcHHHHH-------HHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 203 VIIVDEIGTEAEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 203 vlilDEp~~~~d~~-------~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+||+||||+++|.. .+..+.+ .|.|||++||+.+++. .||+++ ++++|+++..|+++++...
T Consensus 177 lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~d~v~--~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 177 LLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-RAHHIL--FLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-TCSEEE--EEETTEEEEEECHHHHHHH
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hCCEEE--EEECCEEEEECCHHHHHhC
Confidence 99999999999953 3334333 4899999999999876 499999 9999999999999988653
No 28
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.95 E-value=1.8e-28 Score=224.85 Aligned_cols=165 Identities=10% Similarity=0.012 Sum_probs=127.8
Q ss_pred eeeEEEEECC--cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCCcccCC---
Q 017797 97 IVGLTCRVGR--AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD--- 166 (365)
Q Consensus 97 i~~l~~r~~~--~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----~~i~~i~~~~ei~~~--- 166 (365)
+++++++|+. ..+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| +++.|+++...+...
T Consensus 9 ~~~l~~~y~~~~~~i--l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~ 86 (229)
T 2pze_A 9 MENVTAFWEEGGTPV--LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIK 86 (229)
T ss_dssp EEEEEECSSTTSCCS--EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHH
T ss_pred EEEEEEEeCCCCcee--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHH
Confidence 6789999953 344 9999999999999999999999999999999999998743 356777776543211
Q ss_pred -----C-CCchhhh-------hh---h------------hhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHH-
Q 017797 167 -----G-DIPHSAI-------GT---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 217 (365)
Q Consensus 167 -----~-~~~~~~~-------~~---~------------~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~- 217 (365)
. ....... .. . ++...+|+||+||+++|+|++++|++|++||||+++|...
T Consensus 87 enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~ 166 (229)
T 2pze_A 87 ENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166 (229)
T ss_dssp HHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHH
T ss_pred HHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHH
Confidence 0 0000000 00 0 0125789999999999999999999999999999999643
Q ss_pred --HHHH-H---HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 218 --CRSI-A---ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 218 --i~~~-~---~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+.+. . ..|.|||++||+.+++. .||+++ ++++|+++..|+++++..
T Consensus 167 ~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~--~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 167 KEIFESCVCKLMANKTRILVTSKMEHLK-KADKIL--ILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp HHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEE--EEETTEEEEEECHHHHHT
T ss_pred HHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEE--EEECCEEEEECCHHHHHh
Confidence 3332 1 24889999999998876 599999 999999999999988764
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.95 E-value=8.8e-29 Score=236.00 Aligned_cols=165 Identities=19% Similarity=0.193 Sum_probs=128.0
Q ss_pred eeeEEEEECC-cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEE
Q 017797 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i 157 (365)
+++++++|.. ..+ ++++++.+++|++++|+||||||||||+++|+|++.|+.| .+|.++
T Consensus 56 ~~~vs~~y~~~~~v--L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v 133 (306)
T 3nh6_A 56 FENVHFSYADGRET--LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVV 133 (306)
T ss_dssp EEEEEEESSTTCEE--EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEE
T ss_pred EEEEEEEcCCCCce--eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEE
Confidence 6689999964 344 9999999999999999999999999999999999988732 236666
Q ss_pred cCCCcccCC--------C--CCchhhhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 158 DTSNEIGGD--------G--DIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 158 ~~~~ei~~~--------~--~~~~~~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
++...+... + ......+.. . ++...+|+||+||++||+||+.+|++||
T Consensus 134 ~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLl 213 (306)
T 3nh6_A 134 PQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIIL 213 (306)
T ss_dssp CSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred ecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 665443210 0 000000000 0 1124689999999999999999999999
Q ss_pred EcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 206 VDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 206 lDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+||||+++|.. .+..+ ..+.|+|+++|+++.+.. ||+++ +|++|+++..|++++++..
T Consensus 214 LDEPts~LD~~~~~~i~~~l~~l-~~~~Tvi~itH~l~~~~~-aD~i~--vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 214 LDEATSALDTSNERAIQASLAKV-CANRTTIVVAHRLSTVVN-ADQIL--VIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHH-HTTSEEEEECCSHHHHHT-CSEEE--EEETTEEEEEECHHHHHHH
T ss_pred EECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEEcChHHHHc-CCEEE--EEECCEEEEECCHHHHHhc
Confidence 99999999952 33333 347899999999998865 99999 9999999999999998763
No 30
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.95 E-value=3.7e-28 Score=223.96 Aligned_cols=165 Identities=13% Similarity=0.132 Sum_probs=128.5
Q ss_pred eeeEEEEECC--cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCCcccCC---
Q 017797 97 IVGLTCRVGR--AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD--- 166 (365)
Q Consensus 97 i~~l~~r~~~--~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----~~i~~i~~~~ei~~~--- 166 (365)
+++++++|+. ..+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| +++.++++...+...
T Consensus 6 ~~~l~~~y~~~~~~v--l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~ 83 (237)
T 2cbz_A 6 VRNATFTWARSDPPT--LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLR 83 (237)
T ss_dssp EEEEEEESCTTSCCS--EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHH
T ss_pred EEEEEEEeCCCCCce--eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHH
Confidence 6799999973 344 9999999999999999999999999999999999988743 246777775433210
Q ss_pred ------CCCchhh---h----hh---------------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHH-
Q 017797 167 ------GDIPHSA---I----GT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 217 (365)
Q Consensus 167 ------~~~~~~~---~----~~---------------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~- 217 (365)
....... . .. .++...+|+||+||+++|+|++.+|++||+||||+++|...
T Consensus 84 enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~ 163 (237)
T 2cbz_A 84 ENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 163 (237)
T ss_dssp HHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHH
T ss_pred HHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 0001100 0 00 12345689999999999999999999999999999999642
Q ss_pred --HHHHH------HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 218 --CRSIA------ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 218 --i~~~~------~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+.... .+|.|||++||+.+.+. .||+++ ++++|+++..|+++++..
T Consensus 164 ~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~--~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 164 KHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVII--VMSGGKISEMGSYQELLA 217 (237)
T ss_dssp HHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEE--EEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEE--EEeCCEEEEeCCHHHHhh
Confidence 22222 24899999999999875 699999 999999999999998765
No 31
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.95 E-value=6.8e-29 Score=230.64 Aligned_cols=162 Identities=14% Similarity=0.108 Sum_probs=119.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhc--cccCCCCeEE-------------------
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV--LSDEFQKRVV------------------- 155 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gl--l~~~~~~~i~------------------- 155 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+ +.|+. +.|.
T Consensus 6 ~~~l~~~y~~~~v--l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~-G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 6 IRDLWASIDGETI--LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVER-GEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEETTEEE--EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEE-EEEEETTEECTTSCHHHHHHTTB
T ss_pred EEeEEEEECCEEE--EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc-eEEEECCEECCCCCHHHHHhCcE
Confidence 6799999987666 9999999999999999999999999999999998 66652 3332
Q ss_pred -EEcCCCcccCCC--------------C--Cc-h---hhh-------hh-----hhhccC-CCcchhHHHHHHHHHhhCC
Q 017797 156 -IVDTSNEIGGDG--------------D--IP-H---SAI-------GT-----ARRMQV-PEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 156 -~i~~~~ei~~~~--------------~--~~-~---~~~-------~~-----~~~~~~-~S~g~~~r~~la~al~~~P 201 (365)
++++...+.... . .. . ..+ +. .+.... +|+||+||+++|+||+++|
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p 162 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP 162 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCC
T ss_pred EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC
Confidence 222222111000 0 00 0 000 00 022345 8999999999999999999
Q ss_pred CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHh-hhHHHHHHHcCcEEEEecCHHH
Q 017797 202 EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEEA 263 (365)
Q Consensus 202 ~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~-~d~i~~~ll~~g~iv~~g~~~~ 263 (365)
++||+||||+++|. +.+..+.+.|.|||++||+.+++..+ ||+++ ++++|+++..|+++.
T Consensus 163 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~--~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 163 TYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVH--VMMDGRVVATGGPEL 230 (250)
T ss_dssp SEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEE--EEETTEEEEEESHHH
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEE--EEECCEEEEEeCHHH
Confidence 99999999999995 34455545689999999999988877 59999 999999999998873
No 32
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.95 E-value=2.3e-28 Score=226.95 Aligned_cols=161 Identities=13% Similarity=0.171 Sum_probs=126.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------eEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~------------------~i~~i~ 158 (365)
+++++++ .+ ++++++.+++|++++|+||||||||||+++|+|+++|+ |. ++.|++
T Consensus 7 ~~~l~~~----~v--l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~ 79 (249)
T 2qi9_C 7 LQDVAES----TR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLS 79 (249)
T ss_dssp EEEEEET----TT--EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EEceEEE----EE--EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEEC
Confidence 5677765 34 89999999999999999999999999999999999886 31 255555
Q ss_pred CCCcccCC---------CCCc---hhhhhh-----------hhhccCCCcchhHHHHHHHHHhhCCC-------EEEEcC
Q 017797 159 TSNEIGGD---------GDIP---HSAIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPE-------VIIVDE 208 (365)
Q Consensus 159 ~~~ei~~~---------~~~~---~~~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~-------vlilDE 208 (365)
+...+... ...+ ...+.. .+....+|+||+||+++|+|++++|+ +|++||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDE 159 (249)
T 2qi9_C 80 QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 159 (249)
T ss_dssp SCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS
T ss_pred CCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEEC
Confidence 54332211 0000 111100 13345689999999999999999999 999999
Q ss_pred CCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 209 IGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 209 p~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
||+++|. +.++++.++|.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 160 Pts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 160 PMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAW--LLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEE--EEETTEEEEEEEHHHHSC
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhc
Confidence 9999995 3455565669999999999999989999999 999999999999988754
No 33
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.95 E-value=2.3e-28 Score=229.24 Aligned_cols=165 Identities=15% Similarity=0.074 Sum_probs=125.6
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcc--ccCCC-------------------CeEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQ-------------------KRVV 155 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll--~~~~~-------------------~~i~ 155 (365)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|++ .|+.| ..+.
T Consensus 23 ~~~l~~~y~~~~v--l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 100 (267)
T 2zu0_C 23 IKDLHVSVEDKAI--LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIF 100 (267)
T ss_dssp EEEEEEEETTEEE--EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEE
T ss_pred EEeEEEEECCEEE--EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEE
Confidence 7799999987666 99999999999999999999999999999999994 44421 1255
Q ss_pred EEcCCCcccCCC-----------------C---Cchh----hh-------hh----h-hhcc-CCCcchhHHHHHHHHHh
Q 017797 156 IVDTSNEIGGDG-----------------D---IPHS----AI-------GT----A-RRMQ-VPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 156 ~i~~~~ei~~~~-----------------~---~~~~----~~-------~~----~-~~~~-~~S~g~~~r~~la~al~ 198 (365)
++++...+.... . .... .+ +. . +... .+|+||+||+++|+||+
T Consensus 101 ~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~ 180 (267)
T 2zu0_C 101 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV 180 (267)
T ss_dssp EECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHH
T ss_pred EEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence 665543321100 0 0000 00 00 0 1223 49999999999999999
Q ss_pred hCCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHh-hhHHHHHHHcCcEEEEecCHHHHH
Q 017797 199 HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEEARA 265 (365)
Q Consensus 199 ~~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~-~d~i~~~ll~~g~iv~~g~~~~~~ 265 (365)
.+|++||+||||+++|.. .+.++.++|.|||++||+.+++..+ ||+++ ++++|+++..|+++++.
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVH--VLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEE--EEETTEEEEEECTTHHH
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEE--EEECCEEEEEcCHHHHh
Confidence 999999999999999963 3333345589999999999988776 89999 99999999999988764
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.94 E-value=4.6e-28 Score=226.30 Aligned_cols=165 Identities=16% Similarity=0.225 Sum_probs=125.8
Q ss_pred eeeEEEEECCcc-cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEE
Q 017797 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i 157 (365)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|++++. | .++.++
T Consensus 20 i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-G~I~i~g~~i~~~~~~~~~~~i~~v 98 (260)
T 2ghi_A 20 FSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIV 98 (260)
T ss_dssp EEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGBCHHHHHTTEEEE
T ss_pred EEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC-eEEEECCEEhhhcCHHHHhccEEEE
Confidence 678999997531 12499999999999999999999999999999999998753 1 235566
Q ss_pred cCCCcccCC--------C--CCchhhh-------hhh---------------hhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 158 DTSNEIGGD--------G--DIPHSAI-------GTA---------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 158 ~~~~ei~~~--------~--~~~~~~~-------~~~---------------~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
++...+... . ......+ +.. ++...+|+||+||+++|+|++++|++||
T Consensus 99 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll 178 (260)
T 2ghi_A 99 PQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVI 178 (260)
T ss_dssp CSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 554332110 0 0011100 000 1234689999999999999999999999
Q ss_pred EcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 206 VDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 206 lDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+||||+++|. +.+.++. .|.|||++||+.+.+. .||+++ ++++|+++..|++++++.
T Consensus 179 LDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 179 FDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLSTIS-SAESII--LLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGST-TCSEEE--EEETTEEEEEECHHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHH-hCCEEE--EEECCEEEEECCHHHHHh
Confidence 9999999995 3344443 4899999999999886 599999 999999999999998865
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.94 E-value=5.3e-28 Score=237.68 Aligned_cols=169 Identities=12% Similarity=0.078 Sum_probs=127.0
Q ss_pred eeeEEEEE--CCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEE
Q 017797 97 IVGLTCRV--GRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVI 156 (365)
Q Consensus 97 i~~l~~r~--~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~ 156 (365)
+++++++| +...+ ++++++.+++|++++|+||||||||||||+|+|+++ +.| +.+.+
T Consensus 22 ~~~l~~~y~~~~~~~--L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~ 98 (390)
T 3gd7_A 22 VKDLTAKYTEGGNAI--LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGV 98 (390)
T ss_dssp EEEEEEESSSSSCCS--EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEE
T ss_pred EEEEEEEecCCCeEE--eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEE
Confidence 67999999 44445 999999999999999999999999999999999987 421 23555
Q ss_pred EcCCCcccCC---------CCCchhhhhh-----------hhhccC-----------CCcchhHHHHHHHHHhhCCCEEE
Q 017797 157 VDTSNEIGGD---------GDIPHSAIGT-----------ARRMQV-----------PEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 157 i~~~~ei~~~---------~~~~~~~~~~-----------~~~~~~-----------~S~g~~~r~~la~al~~~P~vli 205 (365)
+++...+... .......+.. .+.... +|+||+||++||+||+.+|++||
T Consensus 99 v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLL 178 (390)
T 3gd7_A 99 IPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL 178 (390)
T ss_dssp ESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5554433210 0001111000 011222 89999999999999999999999
Q ss_pred EcCCCcHHHHHHHH----HHH--HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHhchHH
Q 017797 206 VDEIGTEAEAHACR----SIA--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKS 271 (365)
Q Consensus 206 lDEp~~~~d~~~i~----~~~--~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~~~~~ 271 (365)
+|||++++|...-. .+. ..|.|+|+++|+.+... .||+++ +|++|++++.|++++++..+...
T Consensus 179 LDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~--vl~~G~i~~~g~~~el~~~p~~~ 247 (390)
T 3gd7_A 179 LDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFL--VIEENKVRQYDSILELYHYPADR 247 (390)
T ss_dssp EESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEE--EEETTEEEEESSHHHHHHCCSBH
T ss_pred EeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEE--EEECCEEEEECCHHHHHhCCCch
Confidence 99999999963222 122 34899999999987664 699999 99999999999999999875433
No 36
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.94 E-value=9.1e-28 Score=218.01 Aligned_cols=150 Identities=13% Similarity=0.164 Sum_probs=116.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------CeEEEEcCCCcc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------KRVVIVDTSNEI 163 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-------------~~i~~i~~~~ei 163 (365)
+++++++|+. .+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| ..+.|+++...+
T Consensus 13 ~~~ls~~y~~-~i--l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~ 89 (214)
T 1sgw_A 13 IRDLSVGYDK-PV--LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIV 89 (214)
T ss_dssp EEEEEEESSS-EE--EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCC
T ss_pred EEEEEEEeCC-eE--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcC
Confidence 6799999987 65 9999999999999999999999999999999999988732 135666665433
Q ss_pred cCCCCC-------------c--hhhhh-h---------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH---
Q 017797 164 GGDGDI-------------P--HSAIG-T---------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA--- 215 (365)
Q Consensus 164 ~~~~~~-------------~--~~~~~-~---------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~--- 215 (365)
.....+ . ...+. . .++...+|+||+||+++|+|++.+|++||+||||+++|+
T Consensus 90 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~ 169 (214)
T 1sgw_A 90 PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 169 (214)
T ss_dssp CTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTH
T ss_pred CCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHH
Confidence 211000 0 00000 0 122345799999999999999999999999999999994
Q ss_pred ----HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHc
Q 017797 216 ----HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIG 251 (365)
Q Consensus 216 ----~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~ 251 (365)
+.+.++.++|.|||++||+.+++..+||+++ +++
T Consensus 170 ~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~--~~~ 207 (214)
T 1sgw_A 170 HKVLKSILEILKEKGIVIISSREELSYCDVNENLH--KYS 207 (214)
T ss_dssp HHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG--GGB
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EeC
Confidence 4566666668999999999999999999988 655
No 37
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=5.2e-28 Score=226.20 Aligned_cols=163 Identities=18% Similarity=0.166 Sum_probs=123.1
Q ss_pred eeeEEEEECC----cccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------CeEE-E
Q 017797 97 IVGLTCRVGR----AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------KRVV-I 156 (365)
Q Consensus 97 i~~l~~r~~~----~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~---------------~~i~-~ 156 (365)
+++++++|+. ..+ ++++++.++ |++++|+||||||||||+++|+|++ |+.| +++. +
T Consensus 4 ~~~l~~~y~~~~~~~~i--l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 4 LKNVGITLSGKGYERFS--LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEETTEEEE--EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEeCCCCcccee--EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEE
Confidence 6789999976 445 999999999 9999999999999999999999999 8732 1244 4
Q ss_pred EcCCCcccCCC------------CCchhhh-------h-----hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 157 VDTSNEIGGDG------------DIPHSAI-------G-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 157 i~~~~ei~~~~------------~~~~~~~-------~-----~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
+++...+ ... ......+ + ..++...+|+||+||+++|+||+++|++|++||||++
T Consensus 80 v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~ 158 (263)
T 2pjz_A 80 LPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN 158 (263)
T ss_dssp CGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT
T ss_pred eCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 4443322 100 0000000 0 0123456899999999999999999999999999999
Q ss_pred HHHHHHH----HHHHcCcEEEEEEcCcchhHHhhh-HHHHHHHcCcEEEEecCHHHHHH
Q 017797 213 AEAHACR----SIAERGVMLIGTAHGEWLENIIKN-PILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 213 ~d~~~i~----~~~~~G~tVi~t~H~~~~~~~~~d-~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+|..... .+.+-..|||++||+.+++..+|| +++ ++++|+++..|++++++.
T Consensus 159 LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~--~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 159 VDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAY--FLVGNRLQGPISVSELLE 215 (263)
T ss_dssp CCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEE--EEETTEEEEEEEHHHHHT
T ss_pred cCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEE--EEECCEEEEecCHHHHHh
Confidence 9964322 222221299999999999888999 999 999999999999988764
No 38
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.93 E-value=2.3e-26 Score=217.95 Aligned_cols=163 Identities=9% Similarity=-0.010 Sum_probs=120.1
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCCcccCC-----
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD----- 166 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----~~i~~i~~~~ei~~~----- 166 (365)
++++++.+ ..+ ++++++.+++|++++|+||||||||||+++|+|+++|+.| +++.|+++...+...
T Consensus 43 ~~~l~~~~--~~v--l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~en 118 (290)
T 2bbs_A 43 FSNFSLLG--TPV--LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKEN 118 (290)
T ss_dssp -------C--CCS--EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHH
T ss_pred EEEEEEcC--ceE--EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHH
Confidence 55677652 334 9999999999999999999999999999999999988732 357788776544211
Q ss_pred -CC--Cchhhh-------hh---hh------------hccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHH---H
Q 017797 167 -GD--IPHSAI-------GT---AR------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---C 218 (365)
Q Consensus 167 -~~--~~~~~~-------~~---~~------------~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~---i 218 (365)
.. ...... +. .. ....+|+||+||+++|+|++++|++||+||||+++|... +
T Consensus 119 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 198 (290)
T 2bbs_A 119 IIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198 (290)
T ss_dssp HHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH
T ss_pred hhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHH
Confidence 00 000000 00 00 124789999999999999999999999999999999743 3
Q ss_pred HHH-H---HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 219 RSI-A---ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 219 ~~~-~---~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
.++ . ..|.|||++||+.+.+. .||+++ ++++|+++..|+++++..
T Consensus 199 ~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 199 FESCVCKLMANKTRILVTSKMEHLK-KADKIL--ILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHCCCCCTTTSEEEEECCCHHHHH-HSSEEE--EEETTEEEEEECHHHHHH
T ss_pred HHHHHHHhhCCCEEEEEecCHHHHH-cCCEEE--EEECCeEEEeCCHHHHhh
Confidence 232 1 24899999999998875 599999 999999999999998864
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.92 E-value=1.2e-25 Score=232.23 Aligned_cols=166 Identities=16% Similarity=0.198 Sum_probs=127.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+......++++++.+++|+.++|+||||||||||+++|+|+++|+.| +++.+++
T Consensus 344 ~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 423 (582)
T 3b5x_A 344 VKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVS 423 (582)
T ss_pred EEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEc
Confidence 6799999975211249999999999999999999999999999999999998743 2355665
Q ss_pred CCCcccCC--------C---CCchhhhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 159 TSNEIGGD--------G---DIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 159 ~~~ei~~~--------~---~~~~~~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
+...+... + ......+.. . ++...+|+||+||+++|+|+.++|++|+
T Consensus 424 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~ill 503 (582)
T 3b5x_A 424 QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLI 503 (582)
T ss_pred CCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 54433210 0 111111100 0 1124689999999999999999999999
Q ss_pred EcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 206 VDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 206 lDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+||||+++|.+ .+.++. +|+|+|+++|+.+.+. .||+++ ++++|+++..|+++++..
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 504 LDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLSTIE-QADEIL--VVDEGEIIERGRHADLLA 567 (582)
T ss_pred EECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hCCEEE--EEECCEEEEECCHHHHHh
Confidence 99999999963 344443 4899999999999876 699999 999999999999998865
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.92 E-value=3.6e-26 Score=236.04 Aligned_cols=166 Identities=16% Similarity=0.198 Sum_probs=129.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+......++++++.+++|+.++|+||||||||||+++|+|+++|+.| +++.+++
T Consensus 342 ~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 421 (578)
T 4a82_A 342 IDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQ 421 (578)
T ss_dssp EEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEEC
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEe
Confidence 6689999976433359999999999999999999999999999999999998732 1467776
Q ss_pred CCCcccCCCCCchh-----------hhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 159 TSNEIGGDGDIPHS-----------AIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 159 ~~~ei~~~~~~~~~-----------~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
+...+... .+.++ .+.. . ++...+|+||+||+++|||+.++|++|+
T Consensus 422 Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ill 500 (578)
T 4a82_A 422 QDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILI 500 (578)
T ss_dssp SSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred CCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 65543211 11110 0000 0 1123589999999999999999999999
Q ss_pred EcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 206 VDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 206 lDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
+||||+++|.+ .+..+ .+|.|+|+++|+.+.+. .||+++ ++++|++++.|+++++...
T Consensus 501 lDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~-~~d~i~--~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 501 LDEATSALDLESESIIQEALDVL-SKDRTTLIVAHRLSTIT-HADKIV--VIENGHIVETGTHRELIAK 565 (578)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHH-TTTSEEEEECSSGGGTT-TCSEEE--EEETTEEEEEECHHHHHHT
T ss_pred EECccccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHH-cCCEEE--EEECCEEEEECCHHHHHhC
Confidence 99999999963 23333 35799999999999886 599999 9999999999999998764
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=4.4e-26 Score=235.72 Aligned_cols=167 Identities=15% Similarity=0.168 Sum_probs=129.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|.......++++++.+++|+.++|+||||||||||+++|+|+++|+.| +++.+++
T Consensus 344 ~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 423 (587)
T 3qf4_A 344 FENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVP 423 (587)
T ss_dssp EEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEEC
T ss_pred EEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEEC
Confidence 6689999965333359999999999999999999999999999999999998732 2466666
Q ss_pred CCCcccCC----------CCCchhhhhh----------------------hhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD----------GDIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------------------~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+... .......+.. .++...+|+||+||+++|||+.++|++|++
T Consensus 424 Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illl 503 (587)
T 3qf4_A 424 QETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLIL 503 (587)
T ss_dssp SSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred CCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 65443210 0011110000 012245799999999999999999999999
Q ss_pred cCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 207 DEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 207 DEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
||||+++|.+ .++++ .+|+|+|+++|+.+.+. .||+++ ++++|++++.|+++++...
T Consensus 504 DEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~-~~d~i~--vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 504 DDCTSSVDPITEKRILDGLKRY-TKGCTTFIITQKIPTAL-LADKIL--VLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp ESCCTTSCHHHHHHHHHHHHHH-STTCEEEEEESCHHHHT-TSSEEE--EEETTEEEEEECHHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecChHHHH-hCCEEE--EEECCEEEEECCHHHHHhC
Confidence 9999999963 23333 35899999999999875 799999 9999999999999998764
No 42
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.92 E-value=7e-25 Score=214.80 Aligned_cols=218 Identities=18% Similarity=0.202 Sum_probs=157.3
Q ss_pred HHHHHhcccCCCCeEEEEEecCCceEEEEeCccCceec-CCCCCCHHHHHHHHHHHhc------c----CCCeeeEecCc
Q 017797 15 LRDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYL-RSTEVSVEELEYAQSAVGE------F----GGDNRAGIEGT 83 (365)
Q Consensus 15 i~~~l~~~~~~~~~~ei~l~~g~p~~~r~~g~~~~~~~-~~~~~t~~~l~~~~~~~~~------~----~~~~~~~~~g~ 83 (365)
+.+.|..+.. .++||||+..|.|+.+|++|.+. .. ...+++++++..++..+.. + ..|+++.+++.
T Consensus 15 ~~~ll~~a~~-~~asDIhi~~~~~v~~r~~G~l~--~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~d~~~~~~~~ 91 (372)
T 2ewv_A 15 ILEIIKEAIE-LGASDIHLTAGAPPAVRIDGYIK--FLKDFPRLTPEDTQKLAYSVMSEKHRQKLEENGQVDFSFGVRGV 91 (372)
T ss_dssp HHHHHHHHHH-HTCSEEEECSSSSCEEEETTEEE--ECTTSCCSCCSTTHHHHHTTCCSTTTTHHHHSSEEEEEEECSSS
T ss_pred HHHHHHHHHH-CCCeEEEEEcCCeEEEEECCEEE--EeccCCCCCHHHHHHHHHHHhChhhhhhhhhccceEEEEEcCCC
Confidence 4455554432 57999999999999999999764 44 4467888888888876521 1 22444555653
Q ss_pred -eEEEEEEEecCCceeeEEEEECCcccCcchh------hhh-cccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE
Q 017797 84 -LHRISAIRSRKGAIVGLTCRVGRAVSGHIDM------VYD-LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV 155 (365)
Q Consensus 84 -~~rv~~~~~~~~~i~~l~~r~~~~~~~~~~~------l~~-~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~ 155 (365)
++|++.+...+|. .+++|........++. +.. .+.+|++++|+||||||||||+++|+|+++++..++|.
T Consensus 92 ~r~Rv~~~~~~~g~--~~viR~l~~~~~~l~~lg~~~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~ 169 (372)
T 2ewv_A 92 GRFRANVFYQRGSV--AAALRSLPAEIPEFKKLGLPDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII 169 (372)
T ss_dssp CEEEEEEECCSSSC--BEEECCBCSSCCCHHHHCCCSSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEE
T ss_pred cEEEEEEEecCCCc--EEEEEeCCcccCCHhHcCCCHHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEE
Confidence 8999999988888 8999876544322221 222 26789999999999999999999999999886457888
Q ss_pred EEcCCCcccCC---CCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEE
Q 017797 156 IVDTSNEIGGD---GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTA 232 (365)
Q Consensus 156 ~i~~~~ei~~~---~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~ 232 (365)
+++++.++... ..+++..++ ......+.+++.+++++|++|++|||++...+..+..++++|++|++|+
T Consensus 170 ~~e~~~e~~~~~~~~~v~Q~~~g--------~~~~~~~~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~ 241 (372)
T 2ewv_A 170 TIEDPIEYVFKHKKSIVNQREVG--------EDTKSFADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTL 241 (372)
T ss_dssp EEESSCCSCCCCSSSEEEEEEBT--------TTBSCSHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECC
T ss_pred EecccHhhhhccCceEEEeeecC--------CCHHHHHHHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 88876664211 112221111 1112346799999999999999999998777665555667899999999
Q ss_pred cCcchhHHhhhHHH
Q 017797 233 HGEWLENIIKNPIL 246 (365)
Q Consensus 233 H~~~~~~~~~d~i~ 246 (365)
|+.+ +...+++++
T Consensus 242 H~~~-~~~~~~rl~ 254 (372)
T 2ewv_A 242 HTNT-AIDTIHRIV 254 (372)
T ss_dssp CCCS-HHHHHHHHH
T ss_pred Ccch-HHHHHHHHH
Confidence 9987 566788887
No 43
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.92 E-value=1.2e-25 Score=232.19 Aligned_cols=166 Identities=16% Similarity=0.169 Sum_probs=128.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+......++++++.+++|+.++|+||||||||||+++|+|+++|+.| +++.+++
T Consensus 344 ~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 423 (582)
T 3b60_A 344 FRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVS 423 (582)
T ss_dssp EEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEEC
T ss_pred EEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEc
Confidence 6789999974211239999999999999999999999999999999999988732 1366666
Q ss_pred CCCcccCC--------C---CCchhhhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 159 TSNEIGGD--------G---DIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 159 ~~~ei~~~--------~---~~~~~~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
+...+... + ......+.. . ++...+|+||+||+++|+|+.++|++|+
T Consensus 424 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~ill 503 (582)
T 3b60_A 424 QNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_dssp SSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 65433211 0 111111100 0 1224689999999999999999999999
Q ss_pred EcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 206 VDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 206 lDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+||||+++|. +.+.++. +|.|+|+++|+.+.+. .||+++ ++++|+++..|+++++..
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 504 LDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIE-QADEIV--VVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGGGTT-TCSEEE--EEETTEEEEEECHHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHH-hCCEEE--EEECCEEEEecCHHHHHH
Confidence 9999999995 3344444 4899999999999876 699999 999999999999998865
No 44
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=9.9e-26 Score=233.60 Aligned_cols=166 Identities=15% Similarity=0.161 Sum_probs=128.8
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i~ 158 (365)
+++++++|+... ..++++++.+++|+.++|+||||||||||+++|+|++.|+.| +++.+++
T Consensus 357 ~~~v~~~y~~~~-~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~ 435 (598)
T 3qf4_B 357 FKNVWFSYDKKK-PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVL 435 (598)
T ss_dssp EEEEECCSSSSS-CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EEEEEEECCCCC-ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEe
Confidence 668999996532 248999999999999999999999999999999999998732 2466776
Q ss_pred CCCcccCC----------CCCchhhhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 159 TSNEIGGD----------GDIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+...+... .......+.. . ++...+|+||+||+++|||+.++|++|++
T Consensus 436 Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illl 515 (598)
T 3qf4_B 436 QDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILIL 515 (598)
T ss_dssp TTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred CCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 65543211 0011111100 0 11245799999999999999999999999
Q ss_pred cCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 207 DEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 207 DEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
||||+++|.+ .+.++ .+|+|+|+++|+.+.+.. ||+++ ++++|+++..|+++++...
T Consensus 516 DEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~-~d~i~--~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 516 DEATSNVDTKTEKSIQAAMWKL-MEGKTSIIIAHRLNTIKN-ADLII--VLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHH-HTTSEEEEESCCTTHHHH-CSEEE--EECSSSEEECSCHHHHHHT
T ss_pred ECCccCCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHc-CCEEE--EEECCEEEEECCHHHHHhC
Confidence 9999999952 34444 358999999999998865 99999 9999999999999998753
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.91 E-value=3.2e-25 Score=226.90 Aligned_cols=165 Identities=15% Similarity=0.125 Sum_probs=128.2
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCCcccCCCCCch
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGDGDIPH 171 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----~~i~~i~~~~ei~~~~~~~~ 171 (365)
+++++++|+.. . ++.+++.+.+|++++|+||||||||||+++|+|+++|+.| .++.++++.........+..
T Consensus 290 ~~~l~~~~~~~-~--l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~ 366 (538)
T 1yqt_A 290 YPRLVKDYGSF-R--LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYE 366 (538)
T ss_dssp ECCEEEEETTE-E--EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHH
T ss_pred EeeEEEEECCE-E--EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHH
Confidence 55788888652 3 6777888999999999999999999999999999988743 35788887654321111100
Q ss_pred -------------hhhh-----------hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHH
Q 017797 172 -------------SAIG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRS 220 (365)
Q Consensus 172 -------------~~~~-----------~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~ 220 (365)
..+. ..+....+|+|++||+++|++|+++|++||+||||+++|+ +++++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~ 446 (538)
T 1yqt_A 367 LLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 446 (538)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 0000 0133456899999999999999999999999999999995 34555
Q ss_pred HH-HcCcEEEEEEcCcchhHHhhhHHHHHHHcC--cEEEEecCHHHHHH
Q 017797 221 IA-ERGVMLIGTAHGEWLENIIKNPILSDLIGG--VDTVTLGDEEARAR 266 (365)
Q Consensus 221 ~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~--g~iv~~g~~~~~~~ 266 (365)
++ +.|.|||++||+.+++..+||+++ ++++ |+++..|+|++++.
T Consensus 447 l~~~~g~tvi~vsHd~~~~~~~~drv~--vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 447 LMEKNEKTALVVEHDVLMIDYVSDRLM--VFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHTCEEEEECSCHHHHHHHCSEEE--EEEEETTTEEEECCCEEHHH
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEE--EEeCCcceEeecCCHHHHHh
Confidence 54 459999999999999999999999 8875 67888899988765
No 46
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.91 E-value=2.8e-25 Score=230.15 Aligned_cols=166 Identities=15% Similarity=0.159 Sum_probs=125.6
Q ss_pred eeeEEEEECCcc-cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEE
Q 017797 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i 157 (365)
+++++++|+... ...++++++.+++|+.++|+||||||||||+++|+|++.|+.| +++.++
T Consensus 344 ~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v 423 (595)
T 2yl4_A 344 FKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTV 423 (595)
T ss_dssp EEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEE
T ss_pred EEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEE
Confidence 679999997531 1248999999999999999999999999999999999988732 246677
Q ss_pred cCCCcccCC----------CC---Cchhhhhh-h---------------------hhccCCCcchhHHHHHHHHHhhCCC
Q 017797 158 DTSNEIGGD----------GD---IPHSAIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHMPE 202 (365)
Q Consensus 158 ~~~~ei~~~----------~~---~~~~~~~~-~---------------------~~~~~~S~g~~~r~~la~al~~~P~ 202 (365)
++...+... .. .....+.. . ++...+|+||+||+++|+|+.++|+
T Consensus 424 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~ 503 (595)
T 2yl4_A 424 SQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPK 503 (595)
T ss_dssp CSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCS
T ss_pred ccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 665443211 00 11111100 0 0114689999999999999999999
Q ss_pred EEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 203 VIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 203 vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
+|++||||+++|.+ .+.++.+ |.|+|+++|+.+.+. .||+++ ++++|++++.|+++++..
T Consensus 504 illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 504 ILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIK-NANMVA--VLDQGKITEYGKHEELLS 570 (595)
T ss_dssp EEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHH-HSSEEE--EEETTEEEEEECSCC---
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHH-cCCEEE--EEECCEEEEECCHHHHHh
Confidence 99999999999953 3444433 899999999999876 599999 999999999999988764
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.91 E-value=4.5e-25 Score=228.39 Aligned_cols=165 Identities=15% Similarity=0.130 Sum_probs=128.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCCcccCCCCCch
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGDGDIPH 171 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-----~~i~~i~~~~ei~~~~~~~~ 171 (365)
+++++++|+.. . ++.+++.+.+|++++|+||||||||||+++|+|++.|+.| .++.|+++.........+..
T Consensus 360 ~~~l~~~~~~~-~--l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e 436 (607)
T 3bk7_A 360 YPRLVKDYGSF-K--LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYE 436 (607)
T ss_dssp ECCEEEECSSC-E--EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHH
T ss_pred EeceEEEecce-E--EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHH
Confidence 55788888653 3 6777888999999999999999999999999999988743 35788887654322111100
Q ss_pred h-------------hhhh-----------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHH
Q 017797 172 S-------------AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRS 220 (365)
Q Consensus 172 ~-------------~~~~-----------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~ 220 (365)
. .+.. .+....+|+||+||++||+||+++|++||+||||+++|+ ++++.
T Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 516 (607)
T 3bk7_A 437 LLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 516 (607)
T ss_dssp HHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 0 0000 133456899999999999999999999999999999995 34555
Q ss_pred HH-HcCcEEEEEEcCcchhHHhhhHHHHHHHcC--cEEEEecCHHHHHH
Q 017797 221 IA-ERGVMLIGTAHGEWLENIIKNPILSDLIGG--VDTVTLGDEEARAR 266 (365)
Q Consensus 221 ~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~--g~iv~~g~~~~~~~ 266 (365)
+. +.|.|||+++|+.+++..+||+++ ++++ |+++..|+|++++.
T Consensus 517 l~~~~g~tvi~vsHd~~~~~~~adrv~--vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 517 LMEKNEKTALVVEHDVLMIDYVSDRLI--VFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHTTCEEEEECSCHHHHHHHCSEEE--EEEEETTTEEEECCCEEHHH
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEE--EEcCCcceEEecCCHHHHHh
Confidence 54 469999999999999999999999 8875 77888899988765
No 48
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.91 E-value=2.8e-23 Score=200.24 Aligned_cols=219 Identities=14% Similarity=0.148 Sum_probs=151.3
Q ss_pred HHHhcccCCCCeEEEEEecCCceEEEEeCc-cCceecCCC---CCCHHHHHHHHHHHhcc-----CC----CeeeEecCc
Q 017797 17 DRLQNDSKRGQLLEVILDLGRLPEARYLGE-FGGKYLRST---EVSVEELEYAQSAVGEF-----GG----DNRAGIEGT 83 (365)
Q Consensus 17 ~~l~~~~~~~~~~ei~l~~g~p~~~r~~g~-~~~~~~~~~---~~t~~~l~~~~~~~~~~-----~~----~~~~~~~g~ 83 (365)
..|.++.....++||++..+.++.+++.|. +. ..... .+|..++..++..+..+ .. .....+.+
T Consensus 34 ~~l~~~l~d~~v~dI~in~~~~v~v~~~g~~~~--~~~~~~~~~lt~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~- 110 (330)
T 2pt7_A 34 ELFGDFLKMENITEICYNGNKVVWVLKNNGEWQ--PFDVRDRKAFSLSRLMHFARCCASFKKKTIDNYENPILSSNLAN- 110 (330)
T ss_dssp HHHHHHHTSSSEEEEEECSSSEEEEEETTSCEE--EEECTTCGGGSHHHHHHHHHHHHHHTTCCCCSSSCCEEEEECTT-
T ss_pred cchHHHhcCCCCeEEEEcCCCEEEEEECCceEE--EecCCcccCCCHHHHHHHHHHHHHHhCCCCCCCCCeeEEEEcCC-
Confidence 344554445789999999999999998886 43 33333 68999999887766422 11 11122222
Q ss_pred eEEEEEEEe-----cCCceeeEEEEECCc-ccC------------------cchhhhhcccCCcEEEEEcCCCCcHHHHH
Q 017797 84 LHRISAIRS-----RKGAIVGLTCRVGRA-VSG------------------HIDMVYDLLHYGKSILFVGRPGVGKTTVM 139 (365)
Q Consensus 84 ~~rv~~~~~-----~~~~i~~l~~r~~~~-~~~------------------~~~~l~~~l~~g~~v~iiGpnGsGKTTll 139 (365)
..|++.+.+ .+.. .+++|.... .+. .++.+++.+++|++++|+||||||||||+
T Consensus 111 ~~Ri~~~l~~p~~~~~~~--~~~ir~~~~~~i~l~~l~~~g~~~~v~fy~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 111 GERVQIVLSPVTVNDETI--SISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp SCEEEEECTTTSSSTTCC--EEEEECCCCCCCCHHHHHHTTTTTTSTTHHHHHHHHHHHHHHTCCEEEEESTTSCHHHHH
T ss_pred CcEEEEEEcCCccCCCCc--eEEEeCCCCCCCCHHHHHhCCCcCchhhHHHHHhhhhhhccCCCEEEEECCCCCCHHHHH
Confidence 258888872 2223 566664321 122 36778888999999999999999999999
Q ss_pred HHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHH
Q 017797 140 REIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR 219 (365)
Q Consensus 140 r~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~ 219 (365)
++|+|+++|+ ...+++++..++... ..+ +.+... ..+|++|+.++++||+++|++|++|||++.+..+++.
T Consensus 189 ~~l~g~~~~~--~g~i~i~~~~e~~~~-~~~-~~i~~~-----~ggg~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~ 259 (330)
T 2pt7_A 189 KSIMEFIPKE--ERIISIEDTEEIVFK-HHK-NYTQLF-----FGGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYN 259 (330)
T ss_dssp HHGGGGSCTT--SCEEEEESSCCCCCS-SCS-SEEEEE-----CBTTBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHH
T ss_pred HHHhCCCcCC--CcEEEECCeeccccc-cch-hEEEEE-----eCCChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHH
Confidence 9999999886 344556665554211 011 111100 0178999999999999999999999999976566666
Q ss_pred HHHHcCc-EEEEEEcCcchhHHhhhHHHHHHHcCc
Q 017797 220 SIAERGV-MLIGTAHGEWLENIIKNPILSDLIGGV 253 (365)
Q Consensus 220 ~~~~~G~-tVi~t~H~~~~~~~~~d~i~~~ll~~g 253 (365)
.+ .+|+ ++++|+|+.+ +...+|+++ .+..|
T Consensus 260 ~~-~~g~~tvi~t~H~~~-~~~~~dri~--~l~~g 290 (330)
T 2pt7_A 260 VL-CSGHKGTLTTLHAGS-SEEAFIRLA--NMSSS 290 (330)
T ss_dssp HH-HTTCCCEEEEEECSS-HHHHHHHHH--HHHHT
T ss_pred HH-hcCCCEEEEEEcccH-HHHHhhhhe--ehhcC
Confidence 55 4565 7999999999 667899998 66544
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.90 E-value=1.8e-24 Score=221.17 Aligned_cols=164 Identities=15% Similarity=0.153 Sum_probs=121.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------CeEEEEcCCCcccCCC---
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------KRVVIVDTSNEIGGDG--- 167 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------~~i~~i~~~~ei~~~~--- 167 (365)
+++++++|+.. . +...++.+.+|++++|+||||||||||+++|+|+++|+.| ..+.++++........
T Consensus 272 ~~~l~~~~~~~-~--l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~ 348 (538)
T 3ozx_A 272 WTKIIKKLGDF-Q--LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQ 348 (538)
T ss_dssp ECCEEEEETTE-E--EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHH
T ss_pred EcceEEEECCE-E--EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHH
Confidence 45788888763 2 5556778999999999999999999999999999998743 3455665532211100
Q ss_pred --------CC--chhh--------hh----hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHH
Q 017797 168 --------DI--PHSA--------IG----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HAC 218 (365)
Q Consensus 168 --------~~--~~~~--------~~----~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i 218 (365)
.. .... ++ ..+....+|+||+||++||+||+++|++||+||||+++|+ +++
T Consensus 349 ~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l 428 (538)
T 3ozx_A 349 QYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAI 428 (538)
T ss_dssp HHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred HHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 00 0000 00 0134567899999999999999999999999999999995 345
Q ss_pred HHHH-HcCcEEEEEEcCcchhHHhhhHHHHHHHcC--cEEEEecCHHHHH
Q 017797 219 RSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGG--VDTVTLGDEEARA 265 (365)
Q Consensus 219 ~~~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~--g~iv~~g~~~~~~ 265 (365)
++++ +.|.|||++||+++++..+||+++ +|++ |.....+++..+.
T Consensus 429 ~~l~~~~g~tvi~vsHdl~~~~~~aDri~--vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 429 KRVTRERKAVTFIIDHDLSIHDYIADRII--VFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHHHTTCEEEEECSCHHHHHHHCSEEE--EEEEETTTEEEECCCEEHH
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEeCCcceeccCCChHHHH
Confidence 5555 459999999999999999999999 8875 4566667666544
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1e-24 Score=225.61 Aligned_cols=154 Identities=13% Similarity=0.141 Sum_probs=120.3
Q ss_pred chhhhhcccCC-----cEEEEEcCCCCcHHHHHHHHHhccccCCCC-----eEEEEcCCCcccCCCCCch----------
Q 017797 112 IDMVYDLLHYG-----KSILFVGRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDGDIPH---------- 171 (365)
Q Consensus 112 ~~~l~~~l~~g-----~~v~iiGpnGsGKTTllr~l~gll~~~~~~-----~i~~i~~~~ei~~~~~~~~---------- 171 (365)
++++++.+.+| ++++|+||||||||||+++|+|++.|+.|. .+.++++.....+...+.+
T Consensus 363 l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~ 442 (608)
T 3j16_B 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQF 442 (608)
T ss_dssp CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTT
T ss_pred cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhccc
Confidence 56677777766 789999999999999999999999988553 4677766432211100000
Q ss_pred --h-hh-------h----hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH-------HHHHHHH-HcCcEEE
Q 017797 172 --S-AI-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIA-ERGVMLI 229 (365)
Q Consensus 172 --~-~~-------~----~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~-------~~i~~~~-~~G~tVi 229 (365)
. .. + ..+....+|+||+||++||+||+++|++||+||||+++|+ ++++++. +.|.|||
T Consensus 443 ~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tvi 522 (608)
T 3j16_B 443 LNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522 (608)
T ss_dssp TSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred ccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 0 00 0 0134567899999999999999999999999999999995 3455554 5699999
Q ss_pred EEEcCcchhHHhhhHHHHHHHcC--cEEEEecCHHHHHHh
Q 017797 230 GTAHGEWLENIIKNPILSDLIGG--VDTVTLGDEEARARR 267 (365)
Q Consensus 230 ~t~H~~~~~~~~~d~i~~~ll~~--g~iv~~g~~~~~~~~ 267 (365)
++||+++++..+||+++ ++++ |++++.|+|+++++.
T Consensus 523 ivtHdl~~~~~~aDrvi--vl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 523 IVEHDFIMATYLADKVI--VFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp EECSCHHHHHHHCSEEE--ECEEETTTEEECCCCEEHHHH
T ss_pred EEeCCHHHHHHhCCEEE--EEeCCCCeEEecCChHHHhhh
Confidence 99999999999999999 8876 889999999999875
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.90 E-value=3.9e-24 Score=218.80 Aligned_cols=151 Identities=18% Similarity=0.185 Sum_probs=111.9
Q ss_pred eEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCe-------------------------
Q 017797 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR------------------------- 153 (365)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~------------------------- 153 (365)
+++++|+... ..+.+++ .+.+|++++|+||||||||||+|+|+|++.|+.|..
T Consensus 26 ~ls~~yg~~~-~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~ 103 (538)
T 1yqt_A 26 DCVHRYGVNA-FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103 (538)
T ss_dssp CEEEECSTTC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHT
T ss_pred CcEEEECCcc-ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHH
Confidence 8999998653 1388899 899999999999999999999999999998875541
Q ss_pred ----EEEEcCCCcccCC---CCCch--------hhh-------h----hhhhccCCCcchhHHHHHHHHHhhCCCEEEEc
Q 017797 154 ----VVIVDTSNEIGGD---GDIPH--------SAI-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (365)
Q Consensus 154 ----i~~i~~~~ei~~~---~~~~~--------~~~-------~----~~~~~~~~S~g~~~r~~la~al~~~P~vlilD 207 (365)
+.++.+....... ..+.. ..+ + ..+....+|+||+||++||+||+++|++||+|
T Consensus 104 ~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLD 183 (538)
T 1yqt_A 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFD 183 (538)
T ss_dssp TSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred HhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1111110000000 00000 000 0 01334567999999999999999999999999
Q ss_pred CCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCc
Q 017797 208 EIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 253 (365)
Q Consensus 208 Ep~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g 253 (365)
|||+++|+. .++.+.+.|.|||+++|+++++..+||+++ +++++
T Consensus 184 EPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~--vl~~~ 234 (538)
T 1yqt_A 184 EPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIH--VVYGE 234 (538)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEE--EEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEcCc
Confidence 999999963 556666679999999999999999999999 77643
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.89 E-value=1.2e-23 Score=217.74 Aligned_cols=152 Identities=17% Similarity=0.185 Sum_probs=112.6
Q ss_pred eeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCe------------------------
Q 017797 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR------------------------ 153 (365)
Q Consensus 98 ~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~------------------------ 153 (365)
++++++|+... ..+.+++ .+++|++++|+|||||||||||++|+|++.|+.|..
T Consensus 95 ~~ls~~yg~~~-~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRYGVNA-FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEECSTTC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCCC-eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhh
Confidence 48999998753 1388898 899999999999999999999999999998876541
Q ss_pred -----EEEEcCCCcccC---CCCCch--------hhh-------h----hhhhccCCCcchhHHHHHHHHHhhCCCEEEE
Q 017797 154 -----VVIVDTSNEIGG---DGDIPH--------SAI-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (365)
Q Consensus 154 -----i~~i~~~~ei~~---~~~~~~--------~~~-------~----~~~~~~~~S~g~~~r~~la~al~~~P~vlil 206 (365)
+.++.+...... ...+.. ..+ + ..+....+|+||+||++||+||+++|++||+
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlL 252 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFF 252 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 011111000000 000000 000 0 0133456899999999999999999999999
Q ss_pred cCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCc
Q 017797 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 253 (365)
Q Consensus 207 DEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g 253 (365)
||||+++|. +.++.+.+.|.|||+++|+++++..+||+++ ++.++
T Consensus 253 DEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~--vl~~~ 304 (607)
T 3bk7_A 253 DEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIH--VVYGE 304 (607)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEE--EEESC
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEE--EECCC
Confidence 999999995 3566666679999999999999999999998 77653
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.88 E-value=5.4e-23 Score=215.76 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=76.0
Q ss_pred hccCCCcchhHHHHHHHHHhhCCC--EEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHH
Q 017797 179 RMQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (365)
Q Consensus 179 ~~~~~S~g~~~r~~la~al~~~P~--vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~l 249 (365)
....+|+||+||++||+||+++|+ +||+||||+++|+ +.++.+++.|.|||+++|+++++. .||+++ +
T Consensus 199 ~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii--~ 275 (670)
T 3ux8_A 199 SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLI--D 275 (670)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEE--E
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEE--E
Confidence 355689999999999999999998 9999999999984 456677778999999999999775 599999 7
Q ss_pred H------cCcEEEEecCHHHHHHh
Q 017797 250 I------GGVDTVTLGDEEARARR 267 (365)
Q Consensus 250 l------~~g~iv~~g~~~~~~~~ 267 (365)
+ ++|++++.|+++++...
T Consensus 276 l~~g~~~~~G~i~~~g~~~~~~~~ 299 (670)
T 3ux8_A 276 IGPGAGIHGGEVVAAGTPEEVMND 299 (670)
T ss_dssp ECSSSGGGCCSEEEEECHHHHHTC
T ss_pred ecccccccCCEEEEecCHHHHhcC
Confidence 7 89999999999998764
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.88 E-value=1e-22 Score=218.63 Aligned_cols=164 Identities=17% Similarity=0.199 Sum_probs=123.9
Q ss_pred eEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHh-ccc---cCCCCeEEEEcCCC-cccCCC------
Q 017797 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIAR-VLS---DEFQKRVVIVDTSN-EIGGDG------ 167 (365)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~g-ll~---~~~~~~i~~i~~~~-ei~~~~------ 167 (365)
+++++|+...+ ++++++.+.+|++++|+||||||||||||+|+| .+. .....+++++++.. .+....
T Consensus 440 ~ls~~yg~~~i--L~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l 517 (986)
T 2iw3_A 440 EFSLAYGAKIL--LNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFV 517 (986)
T ss_dssp EEEEEETTEEE--EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHH
T ss_pred eEEEEECCEEe--EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHH
Confidence 78999987766 999999999999999999999999999999994 321 11123466666432 111000
Q ss_pred --CCc--hhhh-------hh-----hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHH----HHHHHHcCcE
Q 017797 168 --DIP--HSAI-------GT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----CRSIAERGVM 227 (365)
Q Consensus 168 --~~~--~~~~-------~~-----~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~----i~~~~~~G~t 227 (365)
... ...+ +. .+....+|+||+||++||+||+.+|++||+||||+++|... ...+.+.|.|
T Consensus 518 ~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~t 597 (986)
T 2iw3_A 518 FESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGIT 597 (986)
T ss_dssp HTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSE
T ss_pred HHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCE
Confidence 000 1111 00 13356789999999999999999999999999999999643 2223347999
Q ss_pred EEEEEcCcchhHHhhhHHHHHHHcCcEEE-EecCHHHHHH
Q 017797 228 LIGTAHGEWLENIIKNPILSDLIGGVDTV-TLGDEEARAR 266 (365)
Q Consensus 228 Vi~t~H~~~~~~~~~d~i~~~ll~~g~iv-~~g~~~~~~~ 266 (365)
||++||+.+++..+||+++ ++++|+++ ..|+++++..
T Consensus 598 vIivSHdl~~l~~~adrii--~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 598 SITISHDSVFLDNVCEYII--NYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EEEECSCHHHHHHHCSEEE--EEETTEEEEEESCHHHHHH
T ss_pred EEEEECCHHHHHHhCCEEE--EEECCeeecCCCCHHHHHh
Confidence 9999999999999999999 99999987 5799988764
No 55
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.87 E-value=3.5e-23 Score=230.54 Aligned_cols=167 Identities=16% Similarity=0.172 Sum_probs=128.3
Q ss_pred eeeEEEEECCcc-cCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC------------------CCeEEEE
Q 017797 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF------------------QKRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~------------------~~~i~~i 157 (365)
+++++++|+... ...++++++.+++|+.++|+||||||||||+++|+|++.|+. ..++.++
T Consensus 1033 ~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 1112 (1284)
T 3g5u_A 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIV 1112 (1284)
T ss_dssp EEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEE
T ss_pred EEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEE
Confidence 568999997532 235999999999999999999999999999999999998872 2356777
Q ss_pred cCCCcccCC--------C----CCchhhhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCE
Q 017797 158 DTSNEIGGD--------G----DIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEV 203 (365)
Q Consensus 158 ~~~~ei~~~--------~----~~~~~~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~v 203 (365)
++.+.+... + ......+.. . .+...+|+||+||+++|||+..+|++
T Consensus 1113 ~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~i 1192 (1284)
T 3g5u_A 1113 SQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHI 1192 (1284)
T ss_dssp ESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSS
T ss_pred CCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCE
Confidence 765533210 0 011111000 0 11235799999999999999999999
Q ss_pred EEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 204 IIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 204 lilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
||+||||+++|.+ ++.. ...|+|||+++|+++.+. .||+++ +|++|+++..|+++++...
T Consensus 1193 LiLDEpTs~lD~~~~~~i~~~l~~-~~~~~tvi~isH~l~~i~-~~dri~--vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1193 LLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHRLSTIQ-NADLIV--VIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp EEEESCSSSCCHHHHHHHHHHHHH-HSSSSCEEEECSCTTGGG-SCSEEE--EEETBEEEEEECHHHHHHS
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH-hCCCCEEEEEecCHHHHH-cCCEEE--EEECCEEEEECCHHHHHhC
Confidence 9999999999963 2322 245899999999999885 499999 9999999999999998763
No 56
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.87 E-value=4.1e-23 Score=230.57 Aligned_cols=168 Identities=14% Similarity=0.149 Sum_probs=129.1
Q ss_pred eeeEEEEECCc-ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEE
Q 017797 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i 157 (365)
+++++++|... ....++++++.+++|+.++|+||+||||||++++|.|++.|+.| .++.++
T Consensus 1079 f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V 1158 (1321)
T 4f4c_A 1079 FKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIV 1158 (1321)
T ss_dssp EEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEE
T ss_pred EEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 56899999643 22358999999999999999999999999999999999998743 356677
Q ss_pred cCCCcccCC------------CCCchhhhhh-h---------------------hhccCCCcchhHHHHHHHHHhhCCCE
Q 017797 158 DTSNEIGGD------------GDIPHSAIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHMPEV 203 (365)
Q Consensus 158 ~~~~ei~~~------------~~~~~~~~~~-~---------------------~~~~~~S~g~~~r~~la~al~~~P~v 203 (365)
+|.+.+... .......+.. . .+-..+|+||+||++||||+..+|++
T Consensus 1159 ~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~I 1238 (1321)
T 4f4c_A 1159 SQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKI 1238 (1321)
T ss_dssp CSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSE
T ss_pred CCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCE
Confidence 765543210 0111111100 0 11124699999999999999999999
Q ss_pred EEEcCCCcHHHHH---HHHHHH---HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 204 IIVDEIGTEAEAH---ACRSIA---ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 204 lilDEp~~~~d~~---~i~~~~---~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|||||||+.+|.+ .+.+.. ..|+|+|+++|.++.+. -||+++ +|++|++++.|++++++..
T Consensus 1239 LiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~-~aD~I~--Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1239 LLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVM-NADCIA--VVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp EEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTT-TCSEEE--EESSSSEEEEECHHHHHHC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHH-hCCEEE--EEECCEEEEECCHHHHHhC
Confidence 9999999999853 333332 24899999999999774 699999 9999999999999999863
No 57
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.87 E-value=4.9e-23 Score=229.40 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=129.1
Q ss_pred eeeEEEEECCc-ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEE
Q 017797 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i 157 (365)
+++++++|+.. ....++++++.+++|+.++|+||||||||||+++|+|++.|+.| .++.++
T Consensus 390 ~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v 469 (1284)
T 3g5u_A 390 FKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVV 469 (1284)
T ss_dssp EEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEE
Confidence 66899999753 22359999999999999999999999999999999999998732 136777
Q ss_pred cCCCcccCCCCCchh-----------hhhh----------h------------hhccCCCcchhHHHHHHHHHhhCCCEE
Q 017797 158 DTSNEIGGDGDIPHS-----------AIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVI 204 (365)
Q Consensus 158 ~~~~ei~~~~~~~~~-----------~~~~----------~------------~~~~~~S~g~~~r~~la~al~~~P~vl 204 (365)
+|...+... .+.++ .+.. . ++...+|+||+||++||||+..+|++|
T Consensus 470 ~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~il 548 (1284)
T 3g5u_A 470 SQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKIL 548 (1284)
T ss_dssp CSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEE
T ss_pred cCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEE
Confidence 776544211 11111 0000 0 112357999999999999999999999
Q ss_pred EEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 205 IVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 205 ilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|+||||+.+|.+ .+.. ..+|+|+|+++|+.+.+.. ||+++ ++++|+++..|+++++...
T Consensus 549 iLDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~itH~l~~i~~-~d~i~--vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 549 LLDEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLSTVRN-ADVIA--GFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp EEESTTCSSCHHHHHHHHHHHHH-HHTTSEEEEECSCHHHHTT-CSEEE--ECSSSCCCCEECHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHHHHHH-HcCCCEEEEEecCHHHHHc-CCEEE--EEECCEEEEECCHHHHHhC
Confidence 999999999963 2222 3469999999999998865 99999 9999999999999998764
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.3e-22 Score=209.91 Aligned_cols=151 Identities=17% Similarity=0.198 Sum_probs=109.6
Q ss_pred eEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE----------EEcCCC-------
Q 017797 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV----------IVDTSN------- 161 (365)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~----------~i~~~~------- 161 (365)
+++++|+.... .++.+. .+.+|++++|+|||||||||||++|+|++.|+.|. +. ++....
T Consensus 82 ~~~~~Y~~~~~-~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~-i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSANSF-KLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR-FDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTTSC-EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT-TCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCCce-eecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCce-EecccchhhhhheecChhhhhhhhH
Confidence 79999986542 244444 57899999999999999999999999999998553 21 000000
Q ss_pred ----ccc------CCCCCc---------------------hhhhh-----------hhhhccCCCcchhHHHHHHHHHhh
Q 017797 162 ----EIG------GDGDIP---------------------HSAIG-----------TARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 162 ----ei~------~~~~~~---------------------~~~~~-----------~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
.+. ....++ ...+. ..+.+..+|+||+||++||+||++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~ 238 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ 238 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh
Confidence 000 000000 00000 013456789999999999999999
Q ss_pred CCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcE
Q 017797 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 254 (365)
Q Consensus 200 ~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~ 254 (365)
+|++||+||||+++|+. .++.+.+.|.|||+++|+++++..+||+++ ++.++.
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~--vl~~~~ 298 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVC--IIYGVP 298 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEE--EEESCT
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEeCCc
Confidence 99999999999999963 455556679999999999999999999999 887643
No 59
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.86 E-value=2.3e-22 Score=224.51 Aligned_cols=167 Identities=17% Similarity=0.181 Sum_probs=129.9
Q ss_pred eeeEEEEECCc-ccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEE
Q 017797 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (365)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~------------------~~i~~i 157 (365)
+++++++|... ....++++++.+++|+.++|+||+||||||+++.|.|++.|..| .+|.++
T Consensus 418 ~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v 497 (1321)
T 4f4c_A 418 VENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVV 497 (1321)
T ss_dssp EEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhccccc
Confidence 56899999643 23459999999999999999999999999999999999998743 247777
Q ss_pred cCCCcccCC----------CCCchhhhhhh----------------------hhccCCCcchhHHHHHHHHHhhCCCEEE
Q 017797 158 DTSNEIGGD----------GDIPHSAIGTA----------------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (365)
Q Consensus 158 ~~~~ei~~~----------~~~~~~~~~~~----------------------~~~~~~S~g~~~r~~la~al~~~P~vli 205 (365)
+|.+.+... .......+... .+-..+|||||||++||||+..+|+++|
T Consensus 498 ~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~Ili 577 (1321)
T 4f4c_A 498 SQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILL 577 (1321)
T ss_dssp CSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEE
Confidence 776654221 11111111000 1123469999999999999999999999
Q ss_pred EcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHHh
Q 017797 206 VDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (365)
Q Consensus 206 lDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~~ 267 (365)
|||||+.+|. +.+..+ .+|+|+|+++|..+.+. .||+++ ++++|++++.|+.+++...
T Consensus 578 LDE~tSaLD~~te~~i~~~l~~~-~~~~T~iiiaHrls~i~-~aD~Ii--vl~~G~ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 578 LDEATSALDAESEGIVQQALDKA-AKGRTTIIIAHRLSTIR-NADLII--SCKNGQVVEVGDHRALMAQ 642 (1321)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHH-HTTSEEEEECSCTTTTT-TCSEEE--EEETTEEEEEECHHHHHTT
T ss_pred EecccccCCHHHHHHHHHHHHHH-hCCCEEEEEcccHHHHH-hCCEEE--EeeCCeeeccCCHHHHHHh
Confidence 9999999994 233333 35899999999999774 699999 9999999999999998753
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.86 E-value=4.7e-23 Score=221.26 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=66.7
Q ss_pred ccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHH----HHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEE
Q 017797 180 MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 255 (365)
Q Consensus 180 ~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~----~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~i 255 (365)
...+|+||+||++||++|.++|++||+||||+++|...... +.+.|.+||++||+.+++..+||+++ ++++|++
T Consensus 899 ~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVi--vL~~G~I 976 (986)
T 2iw3_A 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVW--AVKDGRM 976 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEE--CCBTTBC
T ss_pred ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEE--EEECCEE
Confidence 45689999999999999999999999999999999754333 34447899999999999989999999 9999998
Q ss_pred EEecC
Q 017797 256 VTLGD 260 (365)
Q Consensus 256 v~~g~ 260 (365)
+..|+
T Consensus 977 v~~G~ 981 (986)
T 2iw3_A 977 TPSGH 981 (986)
T ss_dssp CC---
T ss_pred EEeCC
Confidence 86653
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.85 E-value=2.3e-22 Score=205.46 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=104.0
Q ss_pred eEEEEECCcccCcchhhhh-cccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE----------EEcCCC------
Q 017797 99 GLTCRVGRAVSGHIDMVYD-LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV----------IVDTSN------ 161 (365)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~-~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~----------~i~~~~------ 161 (365)
..+.||+.... .-..+ ..++|++++|+|||||||||||++|+|++.|+.|. +. .+....
T Consensus 4 ~~~~~~~~~~f---~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~-i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVNGF---KLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD-PNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTTSC---EEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTC-TTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCCce---eecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCc-cccccchhhHHhhcCCeeHHHHHH
Confidence 46778876542 22223 24689999999999999999999999999887542 20 000000
Q ss_pred -------c----ccCCCCCc--------h--------hhh-------h----hhhhccCCCcchhHHHHHHHHHhhCCCE
Q 017797 162 -------E----IGGDGDIP--------H--------SAI-------G----TARRMQVPEPSLQHKVMIEAVENHMPEV 203 (365)
Q Consensus 162 -------e----i~~~~~~~--------~--------~~~-------~----~~~~~~~~S~g~~~r~~la~al~~~P~v 203 (365)
. +......+ . ... + ..+.+..+|+||+||++||+||+++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~i 159 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADV 159 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSE
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 0 00000000 0 000 0 0134556899999999999999999999
Q ss_pred EEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCc
Q 017797 204 IIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 253 (365)
Q Consensus 204 lilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g 253 (365)
||+||||+++|+. .++.+.+ |.|||+++|+++++..+||+++ ++.+|
T Consensus 160 lllDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~--vl~~~ 213 (538)
T 3ozx_A 160 YIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIH--IIYGE 213 (538)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEEE--EEEEE
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEEE--EecCC
Confidence 9999999999963 4455544 9999999999999999999998 87754
No 62
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.84 E-value=1.4e-21 Score=205.12 Aligned_cols=84 Identities=17% Similarity=0.170 Sum_probs=74.0
Q ss_pred ccCCCcchhHHHHHHHHHhhCC---CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHH
Q 017797 180 MQVPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (365)
Q Consensus 180 ~~~~S~g~~~r~~la~al~~~P---~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~l 249 (365)
...+|+||+||++||+||+++| ++||+||||+++|+ +.++++.+.|.|||+++|+++++. .||+++ +
T Consensus 541 ~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~--~ 617 (670)
T 3ux8_A 541 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYII--D 617 (670)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEE--E
T ss_pred chhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEE--E
Confidence 4568999999999999999987 59999999999984 456667777999999999999774 699999 8
Q ss_pred H------cCcEEEEecCHHHHHH
Q 017797 250 I------GGVDTVTLGDEEARAR 266 (365)
Q Consensus 250 l------~~g~iv~~g~~~~~~~ 266 (365)
| ++|++++.|+++++..
T Consensus 618 l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 618 LGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp EESSSGGGCCEEEEEECHHHHHT
T ss_pred ecCCcCCCCCEEEEecCHHHHHh
Confidence 8 8999999999999864
No 63
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.81 E-value=1.7e-19 Score=168.21 Aligned_cols=130 Identities=18% Similarity=0.174 Sum_probs=95.9
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHH
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKV 191 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~ 191 (365)
+++++ +++|++++|+||||||||||+++|+|+++|+..++|.+.+++.++.... ......+..+.-.....+.
T Consensus 17 l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~-----~~~~v~q~~~gl~~~~l~~ 89 (261)
T 2eyu_A 17 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKH-----KKSIVNQREVGEDTKSFAD 89 (261)
T ss_dssp HHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCC-----SSSEEEEEEBTTTBSCHHH
T ss_pred HHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCC-----cceeeeHHHhCCCHHHHHH
Confidence 67777 8899999999999999999999999999886457888887765543211 0000001011111235689
Q ss_pred HHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHc
Q 017797 192 MIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIG 251 (365)
Q Consensus 192 ~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~ 251 (365)
+++++|+++|++|++|||++......+...+++|++|++|+|+.+ +...+++++ .+.
T Consensus 90 ~la~aL~~~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~-~~~~~dri~--~l~ 146 (261)
T 2eyu_A 90 ALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNT-AIDTIHRIV--DIF 146 (261)
T ss_dssp HHHHHHHHCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSS-HHHHHHHHH--HTS
T ss_pred HHHHHHhhCCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcch-HHHHHHHHh--hhc
Confidence 999999999999999999966555444445678999999999998 456789988 554
No 64
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.80 E-value=1.5e-20 Score=164.10 Aligned_cols=120 Identities=11% Similarity=0.166 Sum_probs=83.8
Q ss_pred hhhhcccCCcEEEEEcCCCCcHHHHHH------------HHHhccccCCCCeEEEEcCCCcccCC--CCC---chh--hh
Q 017797 114 MVYDLLHYGKSILFVGRPGVGKTTVMR------------EIARVLSDEFQKRVVIVDTSNEIGGD--GDI---PHS--AI 174 (365)
Q Consensus 114 ~l~~~l~~g~~v~iiGpnGsGKTTllr------------~l~gll~~~~~~~i~~i~~~~ei~~~--~~~---~~~--~~ 174 (365)
++++.+++|++++|+||||||||||++ .+.|++.++.+. ..+... ... ... ..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 72 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDEND--------QTVTGAAFDVLHYIVSKRLQL 72 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTC--------GGGHHHHHHHHHHHHHHHHHT
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccc--------hhhHHHHHHHHHHHHHHHHhC
Confidence 367889999999999999999999999 666666554211 000000 000 000 00
Q ss_pred h---hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH-----------------------HHHHHHHcCcEE
Q 017797 175 G---TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-----------------------ACRSIAERGVML 228 (365)
Q Consensus 175 ~---~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~-----------------------~i~~~~~~G~tV 228 (365)
+ ........|+|++|++++|+++..+|++|++|||++++|.. .+..+.++|.|+
T Consensus 73 g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tv 152 (171)
T 4gp7_A 73 GKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRY 152 (171)
T ss_dssp TCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSE
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcE
Confidence 0 01223345889999999999999999999999999999965 222345569999
Q ss_pred EEEEcCcchhHHh
Q 017797 229 IGTAHGEWLENII 241 (365)
Q Consensus 229 i~t~H~~~~~~~~ 241 (365)
|+++|++++++.+
T Consensus 153 i~vtH~~~~~~~~ 165 (171)
T 4gp7_A 153 VYILNSPEEVEEV 165 (171)
T ss_dssp EEEECSHHHHHHE
T ss_pred EEEeCCHHHhhhh
Confidence 9999999987653
No 65
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=1.3e-19 Score=194.14 Aligned_cols=85 Identities=15% Similarity=0.141 Sum_probs=74.5
Q ss_pred ccCCCcchhHHHHHHHHHhhCC---CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHH
Q 017797 180 MQVPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (365)
Q Consensus 180 ~~~~S~g~~~r~~la~al~~~P---~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~l 249 (365)
...+|+||+||++||++|.++| ++|||||||+++|+ +++..+.+.|.|||+++|+++++. .||+++ +
T Consensus 803 ~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~-~ADrIi--v 879 (916)
T 3pih_A 803 ATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIK-NADHII--D 879 (916)
T ss_dssp STTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEE--E
T ss_pred ccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEE--E
Confidence 4568999999999999999875 79999999999985 456666778999999999999875 499999 8
Q ss_pred H------cCcEEEEecCHHHHHHh
Q 017797 250 I------GGVDTVTLGDEEARARR 267 (365)
Q Consensus 250 l------~~g~iv~~g~~~~~~~~ 267 (365)
| ++|++++.|+|++++..
T Consensus 880 Lgp~gg~~~G~Iv~~Gtpeel~~~ 903 (916)
T 3pih_A 880 LGPEGGKEGGYIVATGTPEEIAKN 903 (916)
T ss_dssp EESSSGGGCCEEEEEESHHHHHSC
T ss_pred ecCCCCCCCCEEEEEcCHHHHHhC
Confidence 8 89999999999998764
No 66
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.79 E-value=2e-18 Score=175.30 Aligned_cols=206 Identities=18% Similarity=0.183 Sum_probs=140.2
Q ss_pred CCCeEEEEEecCC-ceEEEEeCccCceecCCCCCCHHHHHHHHHHHhccCC----CeeeEecCc---eEEEEEEE----e
Q 017797 25 RGQLLEVILDLGR-LPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFGG----DNRAGIEGT---LHRISAIR----S 92 (365)
Q Consensus 25 ~~~~~ei~l~~g~-p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~~~----~~~~~~~g~---~~rv~~~~----~ 92 (365)
..+++|||+.... |+.++..+ .+ .......++++++..+++.+....+ ..++.++.+ -+|+++.. .
T Consensus 141 d~~v~dI~in~~~~~v~v~~~~-~g-~~~~~~~~~~~~l~~li~~i~~~~g~~i~~~~P~~~~~lp~g~Rv~~~~~~~~~ 218 (511)
T 2oap_1 141 DTNVEDISCDGYNIPIFIYHQK-YG-NVETNIVLDQEKLDRMVLRLTQRSGKHISIANPIVDATLPDGSRLQATFGTEVT 218 (511)
T ss_dssp CTTEEEEEECSTTCCCEEEETT-TE-EEEESCCCCHHHHHHHHHHHHHHTTCCCBTTBCEEEEEETTTEEEEEECSSSSC
T ss_pred CCCceEEEEECCCCEEEEEEcc-Cc-EEecCccCCHHHHHHHHHHHHHHcCCCccccCcceeeecCCCeEEEEEECCCcc
Confidence 4689999999866 87776533 22 2223456799999999888743311 112222221 26787775 2
Q ss_pred cCCceeeEEEEECCccc---------C-----cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 93 RKGAIVGLTCRVGRAVS---------G-----HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 93 ~~~~i~~l~~r~~~~~~---------~-----~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
..|. .+++|..+... | .++.+++.+++|++++|+|||||||||||++|+|+++|+ .++++++
T Consensus 219 ~~G~--~i~IR~~~~~~~~~~~l~~~G~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~--~giitie 294 (511)
T 2oap_1 219 PRGS--SFTIRKFTIEPLTPIDLIEKGTVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD--AKVVSIE 294 (511)
T ss_dssp TTCS--EEEEEECCCCCCCHHHHHHTTSSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEE
T ss_pred CCCC--EEEEEecCCCCCChhhHHhcCCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEc
Confidence 4567 89999865432 1 245677778999999999999999999999999999875 5677888
Q ss_pred CCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcCcchh
Q 017797 159 TSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLE 238 (365)
Q Consensus 159 ~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~~~~~ 238 (365)
++.++.... + +.+....+..+..++....-.+..+|+++||+++++|.+..+ ...+.++..+|+.++.|.|..+..
T Consensus 295 d~~E~~~~~--~-~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivgEir~~E-~~~~l~a~~tGh~~~sT~Ha~~~~ 370 (511)
T 2oap_1 295 DTREIKLYH--E-NWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVGEVRGRE-AQTLFQAMSTGHASYSTLHAGDIN 370 (511)
T ss_dssp SSCCCCCCC--S-SEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEESCCCSTH-HHHHHHHHHTTCEEEEEEECSSHH
T ss_pred CcccccCCC--C-CeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeCCcCHHH-HHHHHHhhcCCCCcccccccCCHH
Confidence 877764211 0 111111111223334455667888999999999999999986 444555678899999999998755
Q ss_pred HH
Q 017797 239 NI 240 (365)
Q Consensus 239 ~~ 240 (365)
+.
T Consensus 371 ~~ 372 (511)
T 2oap_1 371 QM 372 (511)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 67
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.79 E-value=1.6e-18 Score=171.91 Aligned_cols=200 Identities=18% Similarity=0.196 Sum_probs=135.9
Q ss_pred CCeEEEEEec---CCceEEEEeCccCceecCCCC--CCHHHHHHHHHHHh-------ccCCCeeeE--ecCc--eEEEEE
Q 017797 26 GQLLEVILDL---GRLPEARYLGEFGGKYLRSTE--VSVEELEYAQSAVG-------EFGGDNRAG--IEGT--LHRISA 89 (365)
Q Consensus 26 ~~~~ei~l~~---g~p~~~r~~g~~~~~~~~~~~--~t~~~l~~~~~~~~-------~~~~~~~~~--~~g~--~~rv~~ 89 (365)
.++||||+.. +.++.+|++|.+. .....+ +.. .+...+..+. +...|.++. +.|. ++|||.
T Consensus 47 ~~aSDIhi~~~~~~~~v~~RidG~l~--~~~~~~~~~~~-~l~~~ik~~a~~~~~e~~~~q~g~~~~~~~~~~~~~Rvs~ 123 (418)
T 1p9r_A 47 EGASDIHIETFEKTLSIRFRVDGVLR--EVLAPSRKLSS-LLVSRVKVMAKLDIAEKRVPQDGRISLRIGGRAVDVRVST 123 (418)
T ss_dssp HTCSEEEEEEETTEEEEEEEETTEEE--EEECCCGGGHH-HHHHHHHHHTTCCTTCCSSCEEEEEEC-----CEEEEEEE
T ss_pred CCCeeEEEEecCCceeEEEEECCEEE--ECCcCchhhhH-HHHHHHHHHcCCChHHhcCCCCceEEEEECCceEEEEEEE
Confidence 5799999998 7799999999874 332222 222 2332233332 123344444 3453 699999
Q ss_pred EEecCCceeeEEEEECCcc--cCcchh----------hhhc-ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE
Q 017797 90 IRSRKGAIVGLTCRVGRAV--SGHIDM----------VYDL-LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 156 (365)
Q Consensus 90 ~~~~~~~i~~l~~r~~~~~--~~~~~~----------l~~~-l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~ 156 (365)
+...+|. .+++|..... .-.+++ +... ..+|++++|+|||||||||||++|+|++++. .++|.+
T Consensus 124 ~~~~~g~--~~viR~~~~~~~~~~l~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~ 200 (418)
T 1p9r_A 124 MPSSHGE--RVVMRLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILT 200 (418)
T ss_dssp ECCTTSC--EEEECCEETTTTCCCGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEE
T ss_pred eecCCCc--EEEEEecccccCCCCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEE
Confidence 9999998 8998875432 111111 2221 3578999999999999999999999999887 678999
Q ss_pred EcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcCcc
Q 017797 157 VDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEW 236 (365)
Q Consensus 157 i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~~~ 236 (365)
++++.++... .+.+..+. . ..|..+..++..+|.++|++++++|+++.+.+.....+..+|+.++.|.|..+
T Consensus 201 ~ed~ie~~~~-~~~q~~v~--~-----~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~ 272 (418)
T 1p9r_A 201 VEDPIEFDID-GIGQTQVN--P-----RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNT 272 (418)
T ss_dssp EESSCCSCCS-SSEEEECB--G-----GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred ecccchhccC-CcceEEEc--c-----ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhh
Confidence 9887765321 11111111 0 11344566788999999999999999998888777777789999998999877
Q ss_pred hhH
Q 017797 237 LEN 239 (365)
Q Consensus 237 ~~~ 239 (365)
..+
T Consensus 273 ~~~ 275 (418)
T 1p9r_A 273 AVG 275 (418)
T ss_dssp SHH
T ss_pred HHH
Confidence 544
No 68
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.8e-20 Score=186.65 Aligned_cols=151 Identities=15% Similarity=0.063 Sum_probs=109.2
Q ss_pred hhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCe-EEEEcCC-CcccCC-C-----------CCch-------
Q 017797 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-VVIVDTS-NEIGGD-G-----------DIPH------- 171 (365)
Q Consensus 113 ~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~-i~~i~~~-~ei~~~-~-----------~~~~------- 171 (365)
.++++.+++|++++|+||||||||||+|+|+|++.++.+.. |.+-.+. ..+... . .+..
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~ 208 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSL 208 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhccccc
Confidence 35778899999999999999999999999999998874404 4332111 111000 0 0000
Q ss_pred -------hhh-------h--hhhhccCCCcchhHHHHHHHH--HhhCCCE----EEEcC-CCcHHHH--HHHHHHH-HcC
Q 017797 172 -------SAI-------G--TARRMQVPEPSLQHKVMIEAV--ENHMPEV----IIVDE-IGTEAEA--HACRSIA-ERG 225 (365)
Q Consensus 172 -------~~~-------~--~~~~~~~~S~g~~~r~~la~a--l~~~P~v----lilDE-p~~~~d~--~~i~~~~-~~G 225 (365)
... + .......+|+||+||+++|++ |..+|++ ||+|| |++++|. +.+..+. +.|
T Consensus 209 ~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~ 288 (460)
T 2npi_A 209 TSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLN 288 (460)
T ss_dssp BSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTT
T ss_pred ccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhC
Confidence 000 0 001123468999999999999 9999999 99999 9999885 4444443 448
Q ss_pred cEEEEEEcCcc------hhHHhhhH-----HHHHHHc-CcEEEEecCHHHHHH
Q 017797 226 VMLIGTAHGEW------LENIIKNP-----ILSDLIG-GVDTVTLGDEEARAR 266 (365)
Q Consensus 226 ~tVi~t~H~~~------~~~~~~d~-----i~~~ll~-~g~iv~~g~~~~~~~ 266 (365)
.++++++|+.+ ++..+||+ ++ +++ +|+++ .|+++++..
T Consensus 289 ~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi--~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 289 VNIMLVLCSETDPLWEKVKKTFGPELGNNNIF--FIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CCEEEEECCSSCTHHHHHHHHHHHHHCGGGEE--EECCCTTCC-CCCHHHHHH
T ss_pred CCEEEEEccCchhhhHHHHHHhcccccCCEEE--EEeCCCcEE-ECCHHHHhh
Confidence 99999999988 77789999 88 888 89999 999987743
No 69
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.76 E-value=1.2e-19 Score=192.88 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=74.1
Q ss_pred ccCCCcchhHHHHHHHHHhhC---CCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHH
Q 017797 180 MQVPEPSLQHKVMIEAVENHM---PEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (365)
Q Consensus 180 ~~~~S~g~~~r~~la~al~~~---P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~l 249 (365)
...+|+|++||+.||++|.++ |++|||||||+++|+ +++..+++.|.|||+++|+++++ ..||+++ +
T Consensus 728 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii--~ 804 (842)
T 2vf7_A 728 ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVL--D 804 (842)
T ss_dssp GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEE--E
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEE--E
Confidence 456799999999999999996 799999999999985 34566677899999999999988 6799999 8
Q ss_pred H------cCcEEEEecCHHHHHH
Q 017797 250 I------GGVDTVTLGDEEARAR 266 (365)
Q Consensus 250 l------~~g~iv~~g~~~~~~~ 266 (365)
| ++|++++.|++++++.
T Consensus 805 L~p~~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 805 IGPGAGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp ECSSSGGGCCSEEEEECHHHHTT
T ss_pred ECCCCCCCCCEEEEEcCHHHHHh
Confidence 8 6899999999998865
No 70
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.75 E-value=1.2e-18 Score=186.68 Aligned_cols=85 Identities=19% Similarity=0.165 Sum_probs=73.8
Q ss_pred ccCCCcchhHHHHHHHHHhhCC---CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHH
Q 017797 180 MQVPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (365)
Q Consensus 180 ~~~~S~g~~~r~~la~al~~~P---~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~l 249 (365)
...+|+|++||++||++|..+| ++|||||||+++|+ +.+..+++.|.|||+++|+++++ ..||+++ +
T Consensus 861 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIi--v 937 (993)
T 2ygr_A 861 APTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWII--D 937 (993)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEE--E
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEE--E
Confidence 4467999999999999999875 99999999999985 34556667899999999999987 4799999 8
Q ss_pred H------cCcEEEEecCHHHHHHh
Q 017797 250 I------GGVDTVTLGDEEARARR 267 (365)
Q Consensus 250 l------~~g~iv~~g~~~~~~~~ 267 (365)
| ++|++++.|+++++...
T Consensus 938 L~p~gg~~~G~Iv~~G~~~el~~~ 961 (993)
T 2ygr_A 938 LGPEGGAGGGTVVAQGTPEDVAAV 961 (993)
T ss_dssp EESSSTTSCSEEEEEECHHHHHHC
T ss_pred ECCCcCCCCCEEEEecCHHHHHhC
Confidence 8 68999999999998753
No 71
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.75 E-value=5.3e-17 Score=158.18 Aligned_cols=212 Identities=15% Similarity=0.160 Sum_probs=139.7
Q ss_pred CCCCeEEEEEecCCceEEEEeCccCceecCCCCCCHHHHHHHHHHHhccC--------CCeeeEecCceEEEEEEE----
Q 017797 24 KRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG--------GDNRAGIEGTLHRISAIR---- 91 (365)
Q Consensus 24 ~~~~~~ei~l~~g~p~~~r~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~~--------~~~~~~~~g~~~rv~~~~---- 91 (365)
...+++||++..+.++.+.+.|.+. ......+|.+++..++..+..+. ......+++ ..|++.+.
T Consensus 34 ~d~~v~dI~in~~~~v~v~~~G~~~--~~~~~~lt~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~Ri~~vl~p~~ 110 (361)
T 2gza_A 34 DDPQITEVCVNRPGEVFCERASAWE--YYAVPNLDYEHLISLGTATARFVDQDISDSRPVLSAILPM-GERIQIVRPPAC 110 (361)
T ss_dssp SCTTEEEEEESSTTEEEEEETTEEE--EEECTTCCHHHHHHHHHHHHHHTTCCCSSSSCEEEEECTT-SCEEEEECTTTB
T ss_pred cCCCCEEEEEcCCCEEEEEECCeEE--EeCCCCCCHHHHHHHHHHHHHHcCCccCCCCCeEEEEcCC-CcEEEEEecCcc
Confidence 3578999999998889888887642 33335689999998877664321 112222222 25888887
Q ss_pred ecCCceeeEEEEECCcc-c--------------------------C---------cchhhhhcccCCcEEEEEcCCCCcH
Q 017797 92 SRKGAIVGLTCRVGRAV-S--------------------------G---------HIDMVYDLLHYGKSILFVGRPGVGK 135 (365)
Q Consensus 92 ~~~~~i~~l~~r~~~~~-~--------------------------~---------~~~~l~~~l~~g~~v~iiGpnGsGK 135 (365)
..++. .+++|..... + . .++.+++.+++|++++|+|||||||
T Consensus 111 ~~~~~--~~~ir~~~~~~itl~~l~~~g~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGK 188 (361)
T 2gza_A 111 EHGTI--SVTIRKPSFTRRTLEDYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGK 188 (361)
T ss_dssp CTTCC--EEEEECCCCCCCCHHHHHHTTTTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCH
T ss_pred CCCCe--EEEEEecCCCCCCHHHHHhcCCcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCH
Confidence 22223 4666643111 1 0 1277888899999999999999999
Q ss_pred HHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhh-hccCC--CcchhHHHHHHHHHhhCCCEEEEcCCCcH
Q 017797 136 TTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTAR-RMQVP--EPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (365)
Q Consensus 136 TTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~-~~~~~--S~g~~~r~~la~al~~~P~vlilDEp~~~ 212 (365)
|||+++|+|+++++ ...+++++..++... ... +.+.... +.... +.+..++..++.++.++|+.+++||++..
T Consensus 189 STll~~l~~~~~~~--~g~I~ie~~~e~~~~-~~~-~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~ 264 (361)
T 2gza_A 189 TTLMKALMQEIPFD--QRLITIEDVPELFLP-DHP-NHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGG 264 (361)
T ss_dssp HHHHHHHHTTSCTT--SCEEEEESSSCCCCT-TCS-SEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCST
T ss_pred HHHHHHHHhcCCCC--ceEEEECCccccCcc-ccC-CEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHH
Confidence 99999999999886 345566655554211 011 1111110 11111 24567788999999999999999999986
Q ss_pred HHHHHHHHHHHcCc-EEEEEEcCcchhHHhhhHHH
Q 017797 213 AEAHACRSIAERGV-MLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 213 ~d~~~i~~~~~~G~-tVi~t~H~~~~~~~~~d~i~ 246 (365)
.-.+.+..+ .+|+ +++.++|+.+ +...++++.
T Consensus 265 ~~~~~l~~l-~~g~~~~l~t~H~~~-~~~~~~Rl~ 297 (361)
T 2gza_A 265 EAYDFINVA-ASGHGGSITSCHAGS-CELTFERLA 297 (361)
T ss_dssp HHHHHHHHH-HTTCCSCEEEEECSS-HHHHHHHHH
T ss_pred HHHHHHHHH-hcCCCeEEEEECCCC-HHHHHHHHH
Confidence 555555554 5665 6899999987 667788988
No 72
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.74 E-value=1.1e-18 Score=186.24 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=73.8
Q ss_pred ccCCCcchhHHHHHHHHHhhCC---CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHH
Q 017797 180 MQVPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (365)
Q Consensus 180 ~~~~S~g~~~r~~la~al~~~P---~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~l 249 (365)
...+|+|++||++||++|.++| ++|||||||+++|+ +.+..+.+.|.|||+++|+++++. .||+++ +
T Consensus 843 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIi--v 919 (972)
T 2r6f_A 843 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYII--D 919 (972)
T ss_dssp GGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEE--E
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEE--E
Confidence 4457999999999999999875 99999999999985 445566778999999999999874 799999 8
Q ss_pred H------cCcEEEEecCHHHHHHh
Q 017797 250 I------GGVDTVTLGDEEARARR 267 (365)
Q Consensus 250 l------~~g~iv~~g~~~~~~~~ 267 (365)
| ++|++++.|+++++...
T Consensus 920 L~p~gG~~~G~Iv~~g~~~el~~~ 943 (972)
T 2r6f_A 920 LGPEGGDRGGQIVAVGTPEEVAEV 943 (972)
T ss_dssp ECSSSTTSCCSEEEEESHHHHHTC
T ss_pred EcCCCCCCCCEEEEecCHHHHHhC
Confidence 8 68999999999998753
No 73
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.73 E-value=1.5e-18 Score=171.41 Aligned_cols=72 Identities=11% Similarity=0.061 Sum_probs=61.9
Q ss_pred CCcchhHHHHHHHHHhhCC--CEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHH---
Q 017797 183 PEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI--- 250 (365)
Q Consensus 183 ~S~g~~~r~~la~al~~~P--~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll--- 250 (365)
+|+|++||++||++++.+| ++||+|||++++|.. .++.+. +|.+||++||+.+++ ..||+++ ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~-~~~d~i~--~l~k~ 371 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIA-ARAHHHY--KVEKQ 371 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHH-TTCSEEE--EEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH-hhcCeEE--EEEEe
Confidence 6999999999999999999 999999999999953 344444 589999999999876 4799999 88
Q ss_pred -cCcEEEEe
Q 017797 251 -GGVDTVTL 258 (365)
Q Consensus 251 -~~g~iv~~ 258 (365)
++|+++..
T Consensus 372 ~~~G~~~~~ 380 (415)
T 4aby_A 372 VEDGRTVSH 380 (415)
T ss_dssp EETTEEEEE
T ss_pred ccCCceEEE
Confidence 88887754
No 74
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.72 E-value=2e-18 Score=168.45 Aligned_cols=74 Identities=11% Similarity=0.046 Sum_probs=63.0
Q ss_pred cCCCcchhHHHHHHHHHh------hCCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHHH
Q 017797 181 QVPEPSLQHKVMIEAVEN------HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (365)
Q Consensus 181 ~~~S~g~~~r~~la~al~------~~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~ 247 (365)
..+|+|++||+++|+|++ ++|++||+||||+++|+. .+..+.+.|.|||+++|+++. ...||+++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~~~- 355 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDRKL- 355 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSCEE-
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCEEE-
Confidence 358999999999999999 699999999999999953 344455679999999999987 46799999
Q ss_pred HHHcCcEEEE
Q 017797 248 DLIGGVDTVT 257 (365)
Q Consensus 248 ~ll~~g~iv~ 257 (365)
++.+|+++.
T Consensus 356 -~l~~G~i~~ 364 (365)
T 3qf7_A 356 -RITGGVVVN 364 (365)
T ss_dssp -EEETTEEC-
T ss_pred -EEECCEEEe
Confidence 999999864
No 75
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.70 E-value=3.7e-19 Score=160.54 Aligned_cols=114 Identities=13% Similarity=0.117 Sum_probs=72.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE--Ec-C----CCcccCCCCCchhh---h--h------hh---
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--VD-T----SNEIGGDGDIPHSA---I--G------TA--- 177 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~--i~-~----~~ei~~~~~~~~~~---~--~------~~--- 177 (365)
+++|++++|+||||||||||+++|+|+ .|+.| .|.. +. . ...+++ +++.. + . ..
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G-~I~~~~~~~~~~~~~~~ig~---v~q~~~enl~~~~~~~~~~~~~~ 93 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK-QVSRIILTRPAVEAGEKLGF---LPGTLNEKIDPYLRPLHDALRDM 93 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTT-SCSEEEEEECSCCTTCCCCS---SCC------CTTTHHHHHHHTTT
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCC-eeeeEEecCCchhhhcceEE---ecCCHHHHHHHHHHHHHHHHHHh
Confidence 488999999999999999999999999 88743 2211 11 1 011111 11110 0 0 00
Q ss_pred -------hhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHH---HcCcEEEEEEcCcchhHH
Q 017797 178 -------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA---ERGVMLIGTAHGEWLENI 240 (365)
Q Consensus 178 -------~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~---~~G~tVi~t~H~~~~~~~ 240 (365)
...+. ..||+||+++|+||+++|++||+||||++ ....+..+. +.|.||| +||+.++++.
T Consensus 94 ~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 94 VEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp SCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred ccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 00111 34999999999999999999999999998 443333322 4589999 9999986653
No 76
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.69 E-value=1.8e-17 Score=145.93 Aligned_cols=128 Identities=23% Similarity=0.184 Sum_probs=80.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCC-------------CeEEEEcCCCc----ccCCCCCchhhhhhhhhccCCCcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSDEFQ-------------KRVVIVDTSNE----IGGDGDIPHSAIGTARRMQVPEPS 186 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~~~~-------------~~i~~i~~~~e----i~~~~~~~~~~~~~~~~~~~~S~g 186 (365)
.++|+||||||||||+++|+|++..... .+++++.+... +.......... ...+....+|+|
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lSgG 80 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKK-LVGSYGVNVQYF 80 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSS-EETTEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccc-cccccccCcCHH
Confidence 5899999999999999999999852211 11111111000 00000000000 011234457999
Q ss_pred hhHHHHHHHH-----HhhCCCEEEEcC--CCcHHHHH---HHHHHH-HcCcEEEEEEc---CcchhHHhhhHHHHHHHcC
Q 017797 187 LQHKVMIEAV-----ENHMPEVIIVDE--IGTEAEAH---ACRSIA-ERGVMLIGTAH---GEWLENIIKNPILSDLIGG 252 (365)
Q Consensus 187 ~~~r~~la~a-----l~~~P~vlilDE--p~~~~d~~---~i~~~~-~~G~tVi~t~H---~~~~~~~~~d~i~~~ll~~ 252 (365)
|+|+++++++ +..+|++|++|| |++++|.. .+..+. +.+.++|+++| +.++++.+|++ .+
T Consensus 81 ~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r------~~ 154 (178)
T 1ye8_A 81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL------PG 154 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC------TT
T ss_pred HHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc------CC
Confidence 9999999996 999999999999 99999864 344433 34677888886 66666665543 34
Q ss_pred cEEEEe
Q 017797 253 VDTVTL 258 (365)
Q Consensus 253 g~iv~~ 258 (365)
|+++..
T Consensus 155 ~~i~~~ 160 (178)
T 1ye8_A 155 AVLIEL 160 (178)
T ss_dssp CEEEEC
T ss_pred cEEEEe
Confidence 777654
No 77
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.59 E-value=5.2e-16 Score=166.95 Aligned_cols=140 Identities=19% Similarity=0.166 Sum_probs=97.1
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHH--------HhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCC
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREI--------ARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP 183 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l--------~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~ 183 (365)
++++++.+.+|++++|+|||||||||+||++ +|..-|.....+..++ .+...-+..+ .....+
T Consensus 652 ~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d---~i~~~ig~~d------~l~~~l 722 (934)
T 3thx_A 652 PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVD---CILARVGAGD------SQLKGV 722 (934)
T ss_dssp CEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCS---EEEEECC---------------
T ss_pred cccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHH---HHHHhcCchh------hHHHhH
Confidence 7788888999999999999999999999999 5554443211111111 1100000111 112345
Q ss_pred CcchhHHHHHHHHH--hhCCCEEEEcCCCcHHHH--------HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcC
Q 017797 184 EPSLQHKVMIEAVE--NHMPEVIIVDEIGTEAEA--------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGG 252 (365)
Q Consensus 184 S~g~~~r~~la~al--~~~P~vlilDEp~~~~d~--------~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~ 252 (365)
|.++.++..+++++ +.+|+++|+|||++++|. ..+..+.+ .|.++|++||+.+.. .+++++. .+.+
T Consensus 723 Stf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~--~v~n 799 (934)
T 3thx_A 723 STFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIP--TVNN 799 (934)
T ss_dssp CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCT--TEEE
T ss_pred hhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccc--eeEe
Confidence 77788888888888 899999999999998874 22344555 499999999998766 5899988 8889
Q ss_pred cEEEEecCHHH
Q 017797 253 VDTVTLGDEEA 263 (365)
Q Consensus 253 g~iv~~g~~~~ 263 (365)
|++...+++++
T Consensus 800 g~v~~~~~~~~ 810 (934)
T 3thx_A 800 LHVTALTTEET 810 (934)
T ss_dssp EEEEEEEETTE
T ss_pred eEEEEEecCCc
Confidence 99988776654
No 78
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.59 E-value=1.5e-16 Score=157.21 Aligned_cols=141 Identities=12% Similarity=0.123 Sum_probs=96.8
Q ss_pred chhhhhcccCCc--------------------EEEEEcCCCCcHHHHHHHHHhccccCCCC------eE---EEEcCCCc
Q 017797 112 IDMVYDLLHYGK--------------------SILFVGRPGVGKTTVMREIARVLSDEFQK------RV---VIVDTSNE 162 (365)
Q Consensus 112 ~~~l~~~l~~g~--------------------~v~iiGpnGsGKTTllr~l~gll~~~~~~------~i---~~i~~~~e 162 (365)
++++++.+++|+ +++|+||||||||||+|+|+|++.|+.+. .+ .++.+...
T Consensus 39 l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~ 118 (413)
T 1tq4_A 39 LNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN 118 (413)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS
T ss_pred hhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccc
Confidence 888999999999 99999999999999999999999877431 00 12222111
Q ss_pred ccC-----CCCCc--hhhhh---------hhhhccCCCcc--hhHHHHHHHHHhh----------CCCEEEEcCCCcHHH
Q 017797 163 IGG-----DGDIP--HSAIG---------TARRMQVPEPS--LQHKVMIEAVENH----------MPEVIIVDEIGTEAE 214 (365)
Q Consensus 163 i~~-----~~~~~--~~~~~---------~~~~~~~~S~g--~~~r~~la~al~~----------~P~vlilDEp~~~~d 214 (365)
+.. ..++. ...+. .....-.+|+| ++|++.+++++.+ +||++++||||+++|
T Consensus 119 ~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD 198 (413)
T 1tq4_A 119 IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQ 198 (413)
T ss_dssp CTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCT
T ss_pred cCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCC
Confidence 100 00110 00000 00111126888 9999999999999 999999999999888
Q ss_pred H-------HHHHHHH-----HcC----cEEEEEEcCcch--hHHhhhHHHHHHHcCc
Q 017797 215 A-------HACRSIA-----ERG----VMLIGTAHGEWL--ENIIKNPILSDLIGGV 253 (365)
Q Consensus 215 ~-------~~i~~~~-----~~G----~tVi~t~H~~~~--~~~~~d~i~~~ll~~g 253 (365)
. +.++.+. +.| .+|++++|..+. ++.+||.+.. .+..|
T Consensus 199 ~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~-~Lpeg 254 (413)
T 1tq4_A 199 TFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLIS-DLPIY 254 (413)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHH-HSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHH-hCccc
Confidence 3 3444442 333 578889999887 8899999985 45444
No 79
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.57 E-value=2.1e-15 Score=137.73 Aligned_cols=136 Identities=15% Similarity=0.082 Sum_probs=78.9
Q ss_pred chhh-hhcccCCcEEEEEcCCCCcHHHHHHHHH--hccccCCCCeEEEEcCCCccc-------CCCCCchhhhh--hh--
Q 017797 112 IDMV-YDLLHYGKSILFVGRPGVGKTTVMREIA--RVLSDEFQKRVVIVDTSNEIG-------GDGDIPHSAIG--TA-- 177 (365)
Q Consensus 112 ~~~l-~~~l~~g~~v~iiGpnGsGKTTllr~l~--gll~~~~~~~i~~i~~~~ei~-------~~~~~~~~~~~--~~-- 177 (365)
++.+ ..-+++|++++|+||||||||||+++|+ +++.+. ..+.++....... ..+..++.... ..
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAI 96 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEE
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEE
Confidence 4443 2368899999999999999999999999 664443 3344443221100 00111111000 00
Q ss_pred -h---------------hccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHH-----H-------HHHHHHHHcCcEEE
Q 017797 178 -R---------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE-----A-------HACRSIAERGVMLI 229 (365)
Q Consensus 178 -~---------------~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d-----~-------~~i~~~~~~G~tVi 229 (365)
. .....+............-..+|+++++|||++.+| . +.+..+++.|+|||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii 176 (251)
T 2ehv_A 97 VDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTI 176 (251)
T ss_dssp EC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEE
T ss_pred EEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 0 000011122223333444468999999999999886 1 34555677899999
Q ss_pred EEEcCcchh---------HHhh-hHHHHHHHc
Q 017797 230 GTAHGEWLE---------NIIK-NPILSDLIG 251 (365)
Q Consensus 230 ~t~H~~~~~---------~~~~-d~i~~~ll~ 251 (365)
+++|+.+.+ +.+| |+++ +++
T Consensus 177 ~vtH~~~~~~~~~~~~~i~~~~aD~vi--~l~ 206 (251)
T 2ehv_A 177 LTTEAPDPQHGKLSRYGIEEFIARGVI--VLD 206 (251)
T ss_dssp EEECCC----CCSSSSSCGGGGCSEEE--EEE
T ss_pred EEECCCCCCcccccccChhhEeeeEEE--EEe
Confidence 999999877 4666 8777 553
No 80
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.56 E-value=1.1e-15 Score=155.92 Aligned_cols=135 Identities=12% Similarity=0.126 Sum_probs=98.5
Q ss_pred hhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEE-cCCCc--ccC---CCCCchhhh---hh----hhhccC
Q 017797 116 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-DTSNE--IGG---DGDIPHSAI---GT----ARRMQV 182 (365)
Q Consensus 116 ~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i-~~~~e--i~~---~~~~~~~~~---~~----~~~~~~ 182 (365)
...+.+|++++|+||||||||||++.+++...+. +.++.++ .+... +.. ..++....+ +. ......
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~ 353 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPES 353 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGG
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEecccc
Confidence 4467899999999999999999999999999875 5555444 33221 100 001110000 00 012234
Q ss_pred CCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH------------HHHHHHHcCcEEEEEEcCc----------chhHH
Q 017797 183 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH------------ACRSIAERGVMLIGTAHGE----------WLENI 240 (365)
Q Consensus 183 ~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~------------~i~~~~~~G~tVi~t~H~~----------~~~~~ 240 (365)
+|+|++|++++++++..+|++||+| |++++|.. ++..+++.|+|||+++|+. ..+..
T Consensus 354 LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~ 432 (525)
T 1tf7_A 354 AGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHIST 432 (525)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTT
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccce
Confidence 7999999999999999999999999 99988843 3455667899999999998 66777
Q ss_pred hhhHHHHHHHcCcE
Q 017797 241 IKNPILSDLIGGVD 254 (365)
Q Consensus 241 ~~d~i~~~ll~~g~ 254 (365)
+||+++ +++.|+
T Consensus 433 ~~D~vi--~L~~ge 444 (525)
T 1tf7_A 433 ITDTII--LLQYVE 444 (525)
T ss_dssp TCSEEE--EEEEEE
T ss_pred eeeEEE--EEEEEE
Confidence 899988 777665
No 81
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.56 E-value=5.1e-16 Score=168.83 Aligned_cols=153 Identities=14% Similarity=0.099 Sum_probs=95.0
Q ss_pred EEEEE-CCcccCcchhhhhcccC-------CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE-EEcCCC-cccCCCCC
Q 017797 100 LTCRV-GRAVSGHIDMVYDLLHY-------GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-IVDTSN-EIGGDGDI 169 (365)
Q Consensus 100 l~~r~-~~~~~~~~~~l~~~l~~-------g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~-~i~~~~-ei~~~~~~ 169 (365)
++++| +...+ ++++++.+.+ |++++|+|||||||||+||.+ |++.+- .+++ ++++.. .+.....+
T Consensus 761 l~~~~~~~~~v--~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--aqiG~~Vpq~~~~l~v~d~I 835 (1022)
T 2o8b_B 761 ITKTFFGDDFI--PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--AQMGCYVPAEVCRLTPIDRV 835 (1022)
T ss_dssp ------CCCCC--CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--HTTTCCEESSEEEECCCSBE
T ss_pred EEEEecCCceE--eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--hheeEEeccCcCCCCHHHHH
Confidence 77777 44445 8899998876 899999999999999999999 987642 1222 344321 11000000
Q ss_pred chhhhhhh----hhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHH--------HHHHHHHHc-CcEEEEEEcCcc
Q 017797 170 PHSAIGTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA--------HACRSIAER-GVMLIGTAHGEW 236 (365)
Q Consensus 170 ~~~~~~~~----~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~--------~~i~~~~~~-G~tVi~t~H~~~ 236 (365)
.. .++.. .....++.+++ +++++++++.+|+++|+|||++++|. ..+..+.+. |.++|++||+.+
T Consensus 836 ~~-rig~~d~~~~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e 913 (1022)
T 2o8b_B 836 FT-RLGASDRIMSGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS 913 (1022)
T ss_dssp EE-ECC---------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH
T ss_pred HH-HcCCHHHHhhchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 00 00000 01112234454 48889999999999999999887552 345556666 999999999999
Q ss_pred hhHHhhhHHHHHHHcCcEEE--EecCHH
Q 017797 237 LENIIKNPILSDLIGGVDTV--TLGDEE 262 (365)
Q Consensus 237 ~~~~~~d~i~~~ll~~g~iv--~~g~~~ 262 (365)
++..+++++. ++ .|++. ..|.++
T Consensus 914 l~~~~~d~~~--v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 914 LVEDYSQNVA--VR-LGHMACMVENECE 938 (1022)
T ss_dssp HHHHTSSCSS--EE-EEEEEEC------
T ss_pred HHHHhCCcce--ee-cCeEEEEEecCcc
Confidence 9998899887 65 47776 345443
No 82
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.55 E-value=3.6e-15 Score=140.68 Aligned_cols=141 Identities=18% Similarity=0.185 Sum_probs=90.4
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc---cc----C-CCCCchhh---------
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE---IG----G-DGDIPHSA--------- 173 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~e---i~----~-~~~~~~~~--------- 173 (365)
.++++++.+++|++++|+||||||||||++.|++.+.+..+..+.++..... +. . ....+...
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~ 103 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREII 103 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCC
Confidence 4889998899999999999999999999999999998875557777643211 10 0 00111000
Q ss_pred ----h----hh-hh--hc------cCCCcch-hHHHHHHHHHhhCCCEEEEcCCCc---H---HHH--------HHHHHH
Q 017797 174 ----I----GT-AR--RM------QVPEPSL-QHKVMIEAVENHMPEVIIVDEIGT---E---AEA--------HACRSI 221 (365)
Q Consensus 174 ----~----~~-~~--~~------~~~S~g~-~~r~~la~al~~~P~vlilDEp~~---~---~d~--------~~i~~~ 221 (365)
. .. .. .+ ...+.++ ++++. ++++.++|++||+|||+. + +|. +.++.+
T Consensus 104 ~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~l 182 (296)
T 1cr0_A 104 ENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGF 182 (296)
T ss_dssp HHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 0 00 00 00 1134444 44444 788999999999999999 4 232 234445
Q ss_pred H-HcCcEEEEEEcCc--c--------------------hhHHhhhHHHHHHHcCcE
Q 017797 222 A-ERGVMLIGTAHGE--W--------------------LENIIKNPILSDLIGGVD 254 (365)
Q Consensus 222 ~-~~G~tVi~t~H~~--~--------------------~~~~~~d~i~~~ll~~g~ 254 (365)
+ +.|++||+++|.. + .++.+||.++ ++++|+
T Consensus 183 a~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi--~L~~~~ 236 (296)
T 1cr0_A 183 AKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTII--ALERNQ 236 (296)
T ss_dssp HHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEE--EEEEC-
T ss_pred HHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEE--EEecCc
Confidence 4 4599999999995 3 5566777777 666654
No 83
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.52 E-value=8.9e-15 Score=131.81 Aligned_cols=130 Identities=15% Similarity=0.107 Sum_probs=73.1
Q ss_pred hcccCCcEEEEEcCCCCcHHHHHHHHHhccccC-----CCCeEEEEcCCCccc-----C----CCCCchhhhhhhhhccC
Q 017797 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-----FQKRVVIVDTSNEIG-----G----DGDIPHSAIGTARRMQV 182 (365)
Q Consensus 117 ~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~-----~~~~i~~i~~~~ei~-----~----~~~~~~~~~~~~~~~~~ 182 (365)
.-+++|++++|+||||||||||+++|+|.+.+. ....+++++....+. . ....++...........
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 99 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 99 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEec
Confidence 457899999999999999999999999966542 234566665533211 0 00111100000000111
Q ss_pred CCcchhHH-HHHHHHH-------hhCCCEEEEcCCCcHHHH----------------H---HHHHHH-HcCcEEEEEEcC
Q 017797 183 PEPSLQHK-VMIEAVE-------NHMPEVIIVDEIGTEAEA----------------H---ACRSIA-ERGVMLIGTAHG 234 (365)
Q Consensus 183 ~S~g~~~r-~~la~al-------~~~P~vlilDEp~~~~d~----------------~---~i~~~~-~~G~tVi~t~H~ 234 (365)
.+...+.. ...+..+ ..+|++|++|||++.+|. + .+..++ +.|+|||+++|.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 22222221 2223333 349999999999997664 2 233333 459999999996
Q ss_pred cch----hHHhhhHHH
Q 017797 235 EWL----ENIIKNPIL 246 (365)
Q Consensus 235 ~~~----~~~~~d~i~ 246 (365)
.+. +...+|.++
T Consensus 180 ~~~~g~~~~~~~d~~l 195 (231)
T 4a74_A 180 QANGGHILAHSATLRV 195 (231)
T ss_dssp C---------CCSEEE
T ss_pred ccCcchhhHhhceEEE
Confidence 654 444555544
No 84
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.52 E-value=1.4e-14 Score=130.30 Aligned_cols=137 Identities=13% Similarity=0.084 Sum_probs=86.9
Q ss_pred chhhhh-cccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccc-------CCCCCchh----hhhhhh-
Q 017797 112 IDMVYD-LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-------GDGDIPHS----AIGTAR- 178 (365)
Q Consensus 112 ~~~l~~-~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~-------~~~~~~~~----~~~~~~- 178 (365)
++.+.. -+++|++++|+||||||||||++.|++...+. ++.+.++....... ..+..++. .+....
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDA 90 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEEC
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEec
Confidence 666665 68899999999999999999999999888765 45677765322100 00000000 000000
Q ss_pred ---------hccCCCcchhHHHHHHHHHhhCCC--EEEEcCCCcHH--HH-------HHHHHHH-HcCcEEEEEEcCc--
Q 017797 179 ---------RMQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEA--EA-------HACRSIA-ERGVMLIGTAHGE-- 235 (365)
Q Consensus 179 ---------~~~~~S~g~~~r~~la~al~~~P~--vlilDEp~~~~--d~-------~~i~~~~-~~G~tVi~t~H~~-- 235 (365)
.....+.++.++...+.+..++|+ +|++|||++.. |. ..+..++ +.|++||+++|..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~ 170 (235)
T 2w0m_A 91 LMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAIT 170 (235)
T ss_dssp CC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC----
T ss_pred cccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 001225566666667777778999 99999999654 42 3455554 5699999999998
Q ss_pred ------chhHHhhhHHHHHHHc
Q 017797 236 ------WLENIIKNPILSDLIG 251 (365)
Q Consensus 236 ------~~~~~~~d~i~~~ll~ 251 (365)
..++.+||.++ +++
T Consensus 171 ~~~~~~~~~~~~~d~vi--~l~ 190 (235)
T 2w0m_A 171 TSQAFGFGVEHVADGII--RFR 190 (235)
T ss_dssp -------CHHHHCSEEE--EEE
T ss_pred cccccccchheeeeEEE--EEE
Confidence 34566677666 554
No 85
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.51 E-value=2.4e-15 Score=143.05 Aligned_cols=117 Identities=17% Similarity=0.170 Sum_probs=80.9
Q ss_pred hhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-c---------------ccCC----C-CCch
Q 017797 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-E---------------IGGD----G-DIPH 171 (365)
Q Consensus 113 ~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~-e---------------i~~~----~-~~~~ 171 (365)
+.+++.+.+|++++|+||||||||||++.|+|++.++ +++|.+..... . +... . ..+.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 3566778899999999999999999999999999887 56676654321 0 1100 0 1111
Q ss_pred hhh----h--hh--------h----------hccCCCcchhHHHHHHHHHhhCCC--EEEEcCCCcHHHH-HHHHHHHH-
Q 017797 172 SAI----G--TA--------R----------RMQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEA-HACRSIAE- 223 (365)
Q Consensus 172 ~~~----~--~~--------~----------~~~~~S~g~~~r~~la~al~~~P~--vlilDEp~~~~d~-~~i~~~~~- 223 (365)
..+ . .. . .+..+| +|++++++++..+|+ +|++| ||+++|. ..+..+.+
T Consensus 170 ~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~ 245 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEV 245 (302)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHh
Confidence 000 0 00 0 011123 789999999999999 99999 9999985 34555554
Q ss_pred cCcEEEEEEcC
Q 017797 224 RGVMLIGTAHG 234 (365)
Q Consensus 224 ~G~tVi~t~H~ 234 (365)
.|.++|++||.
T Consensus 246 ~g~t~iiiThl 256 (302)
T 3b9q_A 246 VGITGLILTKL 256 (302)
T ss_dssp TCCCEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 59999999994
No 86
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.50 E-value=2.7e-16 Score=140.97 Aligned_cols=54 Identities=9% Similarity=-0.189 Sum_probs=41.0
Q ss_pred HHhhCCCEEEEcCCCcHH----HH-------HHHHHHH-HcCcEEEEEEcCcchhHHhhhHHHHHHHc
Q 017797 196 VENHMPEVIIVDEIGTEA----EA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIG 251 (365)
Q Consensus 196 al~~~P~vlilDEp~~~~----d~-------~~i~~~~-~~G~tVi~t~H~~~~~~~~~d~i~~~ll~ 251 (365)
+++++|+++++|||++++ |. +++.++. +.|.++++++|+++++..+||+++ ++.
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~--~l~ 202 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLL--VGT 202 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHH--C--
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHH--Hhc
Confidence 456688899999998765 32 3345554 458999999999999999999999 653
No 87
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.48 E-value=1.9e-14 Score=154.49 Aligned_cols=126 Identities=13% Similarity=0.088 Sum_probs=82.1
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc--------cCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCC
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--------DEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP 183 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~--------~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~ 183 (365)
++++++.+++|++++|+|||||||||+||+++++.- |.....+..++ .+...-+..+.. ......+
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d---~i~~~ig~~d~l---~~~~stf 736 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVD---GIFTRMGAADNI---YKGRSTF 736 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCS---EEEEEC-------------CCH
T ss_pred cccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHH---HHHHhCChHHHH---HHhHHHh
Confidence 788889999999999999999999999999986532 11111111111 110000011100 1123345
Q ss_pred CcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH--------HHHHHHH-cCcEEEEEEcCcchhHHhhhHH
Q 017797 184 EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH--------ACRSIAE-RGVMLIGTAHGEWLENIIKNPI 245 (365)
Q Consensus 184 S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~--------~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i 245 (365)
|.+|+++..++++ +.+|++||+|||++++|+. .+..+.+ .|.++|++||+.+.++ ++++.
T Consensus 737 s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~-l~~~~ 805 (918)
T 3thx_B 737 MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE-LEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHT
T ss_pred hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH-HHhhc
Confidence 6788888777777 8899999999999988852 2344444 5999999999998664 55543
No 88
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.47 E-value=5.1e-14 Score=134.79 Aligned_cols=78 Identities=8% Similarity=0.040 Sum_probs=57.0
Q ss_pred cCCCcchhHHHHHHHHHh----hCCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHH--HH
Q 017797 181 QVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPI--LS 247 (365)
Q Consensus 181 ~~~S~g~~~r~~la~al~----~~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i--~~ 247 (365)
..+|+|++|++++|++++ .+|++||+|||++++|.. .+..+ ..|.+||+++|+.+. ..+||++ +
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~vi~~tH~~~~-~~~~d~~~~v- 294 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-SKHTQFIVITHNKIV-MEAADLLHGV- 294 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-TTTSEEEEECCCTTG-GGGCSEEEEE-
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHH-HhhCceEEEE-
Confidence 457999999999999997 578999999999999853 33333 348899999999764 4578875 4
Q ss_pred HHHcCcE-EEEecCHH
Q 017797 248 DLIGGVD-TVTLGDEE 262 (365)
Q Consensus 248 ~ll~~g~-iv~~g~~~ 262 (365)
++.+|. .+...+.+
T Consensus 295 -~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 295 -TMVNGVSAIVPVEVE 309 (322)
T ss_dssp -EESSSCEEEEECCC-
T ss_pred -EEeCCEEEEEEEEcc
Confidence 444444 44444443
No 89
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.46 E-value=1.4e-14 Score=140.76 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=80.5
Q ss_pred hhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-c---------------ccCC----C-CCchh
Q 017797 114 MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-E---------------IGGD----G-DIPHS 172 (365)
Q Consensus 114 ~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~-e---------------i~~~----~-~~~~~ 172 (365)
.+++.+.+|++++|+||||||||||++.|+|++.++ +++|.+..... . +... . ..|..
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 466778899999999999999999999999999887 56676654321 0 1000 0 11110
Q ss_pred h----hhh----------h----------hhccCCCcchhHHHHHHHHHhhCCC--EEEEcCCCcHHHH-HHHHHHHH-c
Q 017797 173 A----IGT----------A----------RRMQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEA-HACRSIAE-R 224 (365)
Q Consensus 173 ~----~~~----------~----------~~~~~~S~g~~~r~~la~al~~~P~--vlilDEp~~~~d~-~~i~~~~~-~ 224 (365)
. +.. . ..+..+| +|++++++++..+|+ +|++| ||+++|. ..+..+.+ .
T Consensus 228 tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~ 303 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVV 303 (359)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHT
T ss_pred hHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhc
Confidence 0 000 0 0011123 789999999999999 99999 9999985 34455554 5
Q ss_pred CcEEEEEEcC
Q 017797 225 GVMLIGTAHG 234 (365)
Q Consensus 225 G~tVi~t~H~ 234 (365)
|.|+|++||.
T Consensus 304 g~t~iiiThl 313 (359)
T 2og2_A 304 GITGLILTKL 313 (359)
T ss_dssp CCCEEEEESC
T ss_pred CCeEEEEecC
Confidence 9999999994
No 90
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.45 E-value=1.1e-16 Score=152.28 Aligned_cols=143 Identities=10% Similarity=0.042 Sum_probs=97.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCch-----
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPH----- 171 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~----- 171 (365)
+++++++|+ ..+ ++++++.+++|++++|+||||||||||+++|+|++ .|.-+.++++...+... .+..
T Consensus 104 ~~~vs~~y~-~~v--L~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~lf~~-ti~~~ni~~ 176 (305)
T 2v9p_A 104 YQNIELITF-INA--LKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSHFWLA-SLADTRAAL 176 (305)
T ss_dssp HTTCCHHHH-HHH--HHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSGGGGG-GGTTCSCEE
T ss_pred EEEEEEEcC-hhh--hccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCccccccc-cHHHHhhcc
Confidence 447788876 334 89999999999999999999999999999999998 23333334443322110 0000
Q ss_pred ---------hhhhh-h---hhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcCcchh
Q 017797 172 ---------SAIGT-A---RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLE 238 (365)
Q Consensus 172 ---------~~~~~-~---~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~~~~~ 238 (365)
..+.. . .....+|+||+|| |+|++.+|++|| |+++|...-..+.. .+|..+..
T Consensus 177 ~~~~~~~~~~~i~~~L~~gldg~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-------ltH~~~~~ 242 (305)
T 2v9p_A 177 VDDATHACWRYFDTYLRNALDGYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-------LHSRVQTF 242 (305)
T ss_dssp EEEECHHHHHHHHHTTTGGGGTCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-------GTTTEEEE
T ss_pred CccccHHHHHHHHHHhHccCCccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-------HhCCHHHH
Confidence 00000 0 0124579999999 999999999999 99888643222221 17888765
Q ss_pred HHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 239 NIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 239 ~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
..||++ ++++|+++..|+++++
T Consensus 243 -~~aD~i---vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 243 -RFEQPC---TDESGEQPFNITDADW 264 (305)
T ss_dssp -ECCCCC---CCC---CCCCCCHHHH
T ss_pred -HhCCEE---EEeCCEEEEeCCHHHH
Confidence 468888 5788999999999887
No 91
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.44 E-value=8.5e-14 Score=147.23 Aligned_cols=121 Identities=14% Similarity=0.116 Sum_probs=80.3
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc-cCCCCeEEEEcCC-CcccCCCCCchhhhhhhhh-ccCCCcchh
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-DEFQKRVVIVDTS-NEIGGDGDIPHSAIGTARR-MQVPEPSLQ 188 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~-~~~~~~i~~i~~~-~ei~~~~~~~~~~~~~~~~-~~~~S~g~~ 188 (365)
++++++. |++++|+|||||||||+||+|+|+.. +..|.- ++.. ..++....+.. .++.... ....|.++.
T Consensus 569 l~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~---vpa~~~~i~~v~~i~~-~~~~~d~l~~g~S~~~~ 641 (765)
T 1ewq_A 569 PNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSF---VPAEEAHLPLFDGIYT-RIGASDDLAGGKSTFMV 641 (765)
T ss_dssp CEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC---BSSSEEEECCCSEEEE-ECCC------CCSHHHH
T ss_pred eeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCce---eehhccceeeHHHhhc-cCCHHHHHHhcccHHHH
Confidence 6666666 99999999999999999999999874 443321 1111 11111000000 0000001 123477889
Q ss_pred HHHHHHHHH--hhCCCEEEEcCC---CcHHHHH-----HHHHHHHcCcEEEEEEcCcchhH
Q 017797 189 HKVMIEAVE--NHMPEVIIVDEI---GTEAEAH-----ACRSIAERGVMLIGTAHGEWLEN 239 (365)
Q Consensus 189 ~r~~la~al--~~~P~vlilDEp---~~~~d~~-----~i~~~~~~G~tVi~t~H~~~~~~ 239 (365)
+++.++.++ +.+|+++|+||| |+++|.. .+..+.+.|.++|++||+.++..
T Consensus 642 e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 642 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 999999999 889999999999 8888853 23344567999999999987653
No 92
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.44 E-value=1.1e-14 Score=140.96 Aligned_cols=150 Identities=15% Similarity=0.111 Sum_probs=102.1
Q ss_pred eeeEEEEEC-CcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-ccc----C-----
Q 017797 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIG----G----- 165 (365)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~-ei~----~----- 165 (365)
++++++.|. ...+ ++++ +.+.+|+.++|+||||||||||+++|+|+..++. +.+..+.++. ++. .
T Consensus 48 ~~~l~~~~~tg~~a--ld~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~-g~i~~~G~~~~ev~~~i~~~~~~~ 123 (347)
T 2obl_A 48 RQVIDQPFILGVRA--IDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADI-IVLALIGERGREVNEFLALLPQST 123 (347)
T ss_dssp CCCCCSEECCSCHH--HHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSE-EEEEEESCCHHHHHHHHTTSCHHH
T ss_pred ecccceecCCCCEE--EEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCE-EEEEEecccHHHHHHHHHhhhhhh
Confidence 457888887 3344 8999 9999999999999999999999999999998873 3444444331 110 0
Q ss_pred ---------CCCCch-hhh-------hhh--------------hhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHH
Q 017797 166 ---------DGDIPH-SAI-------GTA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (365)
Q Consensus 166 ---------~~~~~~-~~~-------~~~--------------~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d 214 (365)
....+. ..+ ... ....-+|.|+ ++++++ +.+|++ +.++|
T Consensus 124 ~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gld 193 (347)
T 2obl_A 124 LSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFP 193 (347)
T ss_dssp HTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBC
T ss_pred hhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCC
Confidence 000000 000 000 1112236788 777777 577776 77888
Q ss_pred HHHHH-------HHH--HcCc-----EEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 215 AHACR-------SIA--ERGV-----MLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 215 ~~~i~-------~~~--~~G~-----tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
+.... .+. +.|. ||++++|+++ +.+||++. .+.+|+++..++++++
T Consensus 194 p~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~--~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 194 PSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVR--SILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHH--HHCSEEEEBCHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheE--EeeCcEEEEeCCHHHc
Confidence 64332 233 2477 8999999998 57899999 9999999999877664
No 93
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.40 E-value=1.9e-13 Score=131.83 Aligned_cols=65 Identities=11% Similarity=0.058 Sum_probs=52.0
Q ss_pred cCCCcchhH------HHHHHHHHhhCCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 181 QVPEPSLQH------KVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 181 ~~~S~g~~~------r~~la~al~~~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
..+|+|++| ++++++++..+|++|++|||++++|+. .+..+...|.+||++||+.+. ...||+++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~~d~~~ 324 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDAADHVI 324 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGGCSEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHhCCEEE
Confidence 457999999 567777888899999999999999963 344445678899999999764 45788877
No 94
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.39 E-value=6.7e-15 Score=140.55 Aligned_cols=126 Identities=16% Similarity=0.072 Sum_probs=82.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-CeEEEEcCCCcccC---------C--CCCchh----hh----hhh-
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-KRVVIVDTSNEIGG---------D--GDIPHS----AI----GTA- 177 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~-~~i~~i~~~~ei~~---------~--~~~~~~----~~----~~~- 177 (365)
+.+|++++|+||||||||||+++|+|++.+..+ .++.++.+...+.. . .+.+.. .+ ...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~ 166 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK 166 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC
Confidence 678999999999999999999999999988644 46888765433211 0 112211 00 000
Q ss_pred -----hhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHH-cCcEEEEEEcCcch-hHHhhhHHH
Q 017797 178 -----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAE-RGVMLIGTAHGEWL-ENIIKNPIL 246 (365)
Q Consensus 178 -----~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~-~G~tVi~t~H~~~~-~~~~~d~i~ 246 (365)
.....+|+|++||+++++++..+|+|||+|||+..+|... ..+.+ -+.+ |++.|+.+. ...+.++.+
T Consensus 167 ~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~l~~~~D~~-I~V~a~~~~~~~R~i~R~~ 240 (312)
T 3aez_A 167 SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LMVSDLFDFS-LYVDARIEDIEQWYVSRFL 240 (312)
T ss_dssp TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CCGGGGCSEE-EEEEECHHHHHHHHHHHHH
T ss_pred CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-HHHHHhcCcE-EEEECCHHHHHHHHHHHHH
Confidence 2234579999999999999999999999999999864210 11222 2344 555555543 233444544
No 95
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.38 E-value=2.1e-13 Score=139.05 Aligned_cols=139 Identities=14% Similarity=0.103 Sum_probs=89.2
Q ss_pred cchhhhh-cccCCcEEEEEcCCCCcHHHHHHH--HHhccccCCCCeEEEEcCCCcc-----c-CCCCCchhhhh-----h
Q 017797 111 HIDMVYD-LLHYGKSILFVGRPGVGKTTVMRE--IARVLSDEFQKRVVIVDTSNEI-----G-GDGDIPHSAIG-----T 176 (365)
Q Consensus 111 ~~~~l~~-~l~~g~~v~iiGpnGsGKTTllr~--l~gll~~~~~~~i~~i~~~~ei-----~-~~~~~~~~~~~-----~ 176 (365)
.++++++ .+++|++++|+||||||||||+++ ++|+++|+. +.+.+-...... . ..+.+++.... .
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~-g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~ 105 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE-PGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFI 105 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCC-CEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEE
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC-CEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEE
Confidence 4999999 999999999999999999999999 789998763 344433322110 0 01112221110 0
Q ss_pred hh------hccCCCc-ch-hHHHHHHHHH-hhCCCEEEEcCCCcH-----HHH-------HHHHHHHHcCcEEEEEEcCc
Q 017797 177 AR------RMQVPEP-SL-QHKVMIEAVE-NHMPEVIIVDEIGTE-----AEA-------HACRSIAERGVMLIGTAHGE 235 (365)
Q Consensus 177 ~~------~~~~~S~-g~-~~r~~la~al-~~~P~vlilDEp~~~-----~d~-------~~i~~~~~~G~tVi~t~H~~ 235 (365)
.. ....+.. +. .+...+...+ ..+|+++++|||++. +|. +++..+++.|+|||+++|+.
T Consensus 106 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~ 185 (525)
T 1tf7_A 106 LDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERI 185 (525)
T ss_dssp EECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred EecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 00 0011111 11 1223344455 379999999999873 242 45666677899999999999
Q ss_pred chh---------HHhhhHHHHHHHcC
Q 017797 236 WLE---------NIIKNPILSDLIGG 252 (365)
Q Consensus 236 ~~~---------~~~~d~i~~~ll~~ 252 (365)
+++ +.+||+++ ++++
T Consensus 186 ~~~~~~~~~~i~~~laD~vi--~L~~ 209 (525)
T 1tf7_A 186 EEYGPIARYGVEEFVSDNVV--ILRN 209 (525)
T ss_dssp SSSSCSSTTSCHHHHCSEEE--EEEE
T ss_pred CCccccccccceeeeeeEEE--EEEE
Confidence 874 56799999 8866
No 96
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.38 E-value=2.9e-14 Score=142.16 Aligned_cols=152 Identities=11% Similarity=0.061 Sum_probs=102.4
Q ss_pred eeeEEEEEC-CcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-ccc----------
Q 017797 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIG---------- 164 (365)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~-ei~---------- 164 (365)
++++++.|. ...+ ++++ +.+.+|+.++|+||||||||||+++|+|+..++. +.+....++. ++.
T Consensus 134 ~~~v~~~~~tg~~v--ld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~-G~i~~~G~r~~ev~~~~~~~~~~~ 209 (438)
T 2dpy_A 134 RTPIEHVLDTGVRA--INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADV-IVVGLIGERGREVKDFIENILGPD 209 (438)
T ss_dssp SCCCCSBCCCSCHH--HHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSE-EEEEEESCCHHHHHHHHHTTTHHH
T ss_pred EeccceecCCCceE--Eeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCe-EEEEEeceecHHHHHHHHhhcccc
Confidence 457788886 3334 8999 9999999999999999999999999999998873 3444443310 110
Q ss_pred ---C-CCCCch--------hhhh-----hh--------------hhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHH
Q 017797 165 ---G-DGDIPH--------SAIG-----TA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (365)
Q Consensus 165 ---~-~~~~~~--------~~~~-----~~--------------~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~ 213 (365)
. ...+++ ..+. .. ....-+|+|+ |+++++ +.+|++ ++++
T Consensus 210 ~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~~------t~gl 279 (438)
T 2dpy_A 210 GRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPPA------TKGY 279 (438)
T ss_dssp HHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCCC------SSSC
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCcc------cccC
Confidence 0 000111 0000 00 0111237787 888887 788877 7877
Q ss_pred HHH-------HHHHHHH---c-Cc-----EEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 214 EAH-------ACRSIAE---R-GV-----MLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 214 d~~-------~i~~~~~---~-G~-----tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
|.. ++..+.+ . |. ||++++|+++ ..+||+++ .+.+|+++..+++.++..
T Consensus 280 D~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~--~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 280 PPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSAR--AILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp CTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHH--HHSSEEEEECHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEE--EEeCcEEEEeCCHHHccC
Confidence 742 2333333 2 64 8999999999 57899999 999999999988877643
No 97
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.38 E-value=1.8e-13 Score=145.40 Aligned_cols=139 Identities=15% Similarity=0.110 Sum_probs=83.4
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC-CCCeEEEEcCC-CcccCCCC-Cchhhhhh--hhhccCCCcc
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVDTS-NEIGGDGD-IPHSAIGT--ARRMQVPEPS 186 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~-~~~~i~~i~~~-~ei~~~~~-~~~~~~~~--~~~~~~~S~g 186 (365)
++++++. ++|++++|+|||||||||+||+|+|+.... .+. +++.. ..+..... ++...... .......+.+
T Consensus 598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~---~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e 673 (800)
T 1wb9_A 598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS---YVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVE 673 (800)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC---CBSSSEEEECCCCEEEEEEC-----------CHHH
T ss_pred eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc---ccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHH
Confidence 7778887 889999999999999999999999985321 111 11111 01111000 00000000 0011122334
Q ss_pred hhHHHHHHHHHhhCCCEEEEcCCCcHHH---H-----HHHHHHHH-cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEE
Q 017797 187 LQHKVMIEAVENHMPEVIIVDEIGTEAE---A-----HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 257 (365)
Q Consensus 187 ~~~r~~la~al~~~P~vlilDEp~~~~d---~-----~~i~~~~~-~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~ 257 (365)
++ +...+...+.+|+++|+|||+++.| . ..+..+.+ .|.++|++||+.+... +|++.. .+..+++.+
T Consensus 674 ~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~--~v~n~~~~~ 749 (800)
T 1wb9_A 674 MT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ-LPEKME--GVANVHLDA 749 (800)
T ss_dssp HH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHST--TEEEEEEEE
T ss_pred HH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-Hhhhhh--ceEEEEEEE
Confidence 43 3344444578999999999955433 2 34555666 4999999999998764 788776 666677654
Q ss_pred e
Q 017797 258 L 258 (365)
Q Consensus 258 ~ 258 (365)
.
T Consensus 750 ~ 750 (800)
T 1wb9_A 750 L 750 (800)
T ss_dssp E
T ss_pred E
Confidence 4
No 98
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.37 E-value=1.1e-12 Score=127.08 Aligned_cols=128 Identities=14% Similarity=0.113 Sum_probs=81.0
Q ss_pred chhh-hhcccCCcEEEEEcCCCCcHHHHHHHHHhcc--ccCC---CCeEEEEcCCCccc-----C---CCCCchhhhh-h
Q 017797 112 IDMV-YDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEF---QKRVVIVDTSNEIG-----G---DGDIPHSAIG-T 176 (365)
Q Consensus 112 ~~~l-~~~l~~g~~v~iiGpnGsGKTTllr~l~gll--~~~~---~~~i~~i~~~~ei~-----~---~~~~~~~~~~-~ 176 (365)
++.+ ..-+++|++++|+||||||||||++.+++.. +|+. +++++|++....+. . ...+....+. .
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~n 199 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKH 199 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGG
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhC
Confidence 4444 5678999999999999999999999999998 5554 36777776543210 0 0011110110 0
Q ss_pred hhhcc-CCCcchhHHHHHHHHHh-------hCCCEEEEcCCCcHHHHH-------------------HHHHHH-HcCcEE
Q 017797 177 ARRMQ-VPEPSLQHKVMIEAVEN-------HMPEVIIVDEIGTEAEAH-------------------ACRSIA-ERGVML 228 (365)
Q Consensus 177 ~~~~~-~~S~g~~~r~~la~al~-------~~P~vlilDEp~~~~d~~-------------------~i~~~~-~~G~tV 228 (365)
..... ..+.++.+.+..+.++. .+|++||+|||++.+|.+ .+..++ +.|++|
T Consensus 200 i~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tv 279 (349)
T 1pzn_A 200 IYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAV 279 (349)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred EEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEE
Confidence 00001 12345667777777777 689999999999987652 122233 359999
Q ss_pred EEEEcCcchhH
Q 017797 229 IGTAHGEWLEN 239 (365)
Q Consensus 229 i~t~H~~~~~~ 239 (365)
|+|+|.....+
T Consensus 280 ii~~h~~~~~~ 290 (349)
T 1pzn_A 280 FVTNQVQARPD 290 (349)
T ss_dssp EEEEECC----
T ss_pred EEEcccccccc
Confidence 99999876443
No 99
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.35 E-value=2.8e-14 Score=129.18 Aligned_cols=131 Identities=11% Similarity=-0.028 Sum_probs=78.1
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC-----------CcccCC-------------
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-----------NEIGGD------------- 166 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~-----------~ei~~~------------- 166 (365)
.++++++.+++|++++|+||||||||||+++|+|++ | | .+.+ ..+ ..+.+.
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G-~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--N-YFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--T-TEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--C-cEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 388999999999999999999999999999999998 4 2 2322 110 000000
Q ss_pred ----------C---CCchhhhhh-hhhc------cCCCcchhHHHHH-----HHHHhhCCCEEEEcCCCcHHHH------
Q 017797 167 ----------G---DIPHSAIGT-ARRM------QVPEPSLQHKVMI-----EAVENHMPEVIIVDEIGTEAEA------ 215 (365)
Q Consensus 167 ----------~---~~~~~~~~~-~~~~------~~~S~g~~~r~~l-----a~al~~~P~vlilDEp~~~~d~------ 215 (365)
. +.+...+.. .... ..+|+|++||.++ +++++..|+++++|||++.+|.
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i 166 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQI 166 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHH
Confidence 0 000000000 0000 1238999999999 7788889999999999987662
Q ss_pred -HHHHHHHH-------cCcEEEEEEcCcchhHHhhhHHH
Q 017797 216 -HACRSIAE-------RGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 216 -~~i~~~~~-------~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
+.+..+.. .+...|+++|+.+++....++++
T Consensus 167 ~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 167 QKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 22222211 45778889999887877777777
No 100
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.34 E-value=9.3e-13 Score=117.75 Aligned_cols=121 Identities=17% Similarity=0.111 Sum_probs=76.0
Q ss_pred chhhhh-cccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccC--------CCCCchhhhhhhhhccC
Q 017797 112 IDMVYD-LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------DGDIPHSAIGTARRMQV 182 (365)
Q Consensus 112 ~~~l~~-~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~--------~~~~~~~~~~~~~~~~~ 182 (365)
++.+.. -+++|++++|+||||||||||++.+++ .+ +..+.+++....+.. ..++....+...-....
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~--~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS--GKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFT 84 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH--CSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEEC
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc--CCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEe
Confidence 555543 578999999999999999999999999 33 567888865432110 00000000000001122
Q ss_pred CCcch--hHHHHHHHHHhhC-CCEEEEcCCCcHHHH---------------HHHHHHH-HcCcEEEEEEcCcc
Q 017797 183 PEPSL--QHKVMIEAVENHM-PEVIIVDEIGTEAEA---------------HACRSIA-ERGVMLIGTAHGEW 236 (365)
Q Consensus 183 ~S~g~--~~r~~la~al~~~-P~vlilDEp~~~~d~---------------~~i~~~~-~~G~tVi~t~H~~~ 236 (365)
.+.++ ++.+..++++..+ |++||+|||++.+|. ..+..++ +.|++||+++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 34443 3455566677765 999999999986542 1244444 45999999999875
No 101
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.34 E-value=8.7e-14 Score=127.86 Aligned_cols=141 Identities=16% Similarity=0.161 Sum_probs=81.1
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC----CCCeEEEEcCCCcccCC-----------C--CC--chh
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVIVDTSNEIGGD-----------G--DI--PHS 172 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~----~~~~i~~i~~~~ei~~~-----------~--~~--~~~ 172 (365)
++++++.+++|.+++|+|||||||||++++|++++... ....+.++++.. +... . .+ +..
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~~~~ 93 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDHPDA 93 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTSGGG
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc-CccccCHhHhhhhhccCCCCCCccc
Confidence 89999999999999999999999999999999986421 124566776543 2110 0 00 100
Q ss_pred --------hhhh-----hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcCcchhH
Q 017797 173 --------AIGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLEN 239 (365)
Q Consensus 173 --------~~~~-----~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~~~~~~ 239 (365)
.+.. ......+|+|+++++.+ +++..+|+++|+|||....+... ..+ .+.+|++++|...
T Consensus 94 ~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l-~~~--~~~~i~v~th~~~--- 166 (245)
T 2jeo_A 94 FDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEI-RDM--FHLRLFVDTDSDV--- 166 (245)
T ss_dssp BCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHH-HTT--CSEEEEEECCHHH---
T ss_pred ccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHH-HHh--cCeEEEEECCHHH---
Confidence 0000 01233468888888766 46778899999999987544332 222 4789999999743
Q ss_pred HhhhHHHHHHHcCcEEEEecCHHHHHH
Q 017797 240 IIKNPILSDLIGGVDTVTLGDEEARAR 266 (365)
Q Consensus 240 ~~~d~i~~~ll~~g~iv~~g~~~~~~~ 266 (365)
.+++++..++ ++|+ +++++..
T Consensus 167 ~~~r~~~r~~-~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 167 RLSRRVLRDV-RRGR-----DLEQILT 187 (245)
T ss_dssp HHHHHHHHHT-C--------CHHHHHH
T ss_pred HHHHHHHHHH-HcCC-----CHHHHHH
Confidence 2344444323 4453 4555543
No 102
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.34 E-value=1.9e-13 Score=127.94 Aligned_cols=109 Identities=14% Similarity=0.159 Sum_probs=71.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCC---------------CeEEEEcCCCcccC----------CCCCchh----hh
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSDEFQ---------------KRVVIVDTSNEIGG----------DGDIPHS----AI 174 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~~~~---------------~~i~~i~~~~ei~~----------~~~~~~~----~~ 174 (365)
.++|+||||||||||+++|+|+..|+.+ ..+.++.+...+.. ....... .+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 4899999999999999999999987632 23444443322110 0000000 00
Q ss_pred hh-------hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc---HHHHHHHHHHHHcCcEEEEEEcCcc
Q 017797 175 GT-------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT---EAEAHACRSIAERGVMLIGTAHGEW 236 (365)
Q Consensus 175 ~~-------~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~---~~d~~~i~~~~~~G~tVi~t~H~~~ 236 (365)
.. ......+|+|++||+++|+|++. ++++|||+. .+|.+.++.+.+. ++||.+.|..+
T Consensus 84 ~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 84 EKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGG
T ss_pred HHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccc
Confidence 00 12245679999999999998775 999999866 4567788888777 88888888765
No 103
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.33 E-value=1.3e-12 Score=113.92 Aligned_cols=103 Identities=19% Similarity=0.156 Sum_probs=64.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHh
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~ 198 (365)
+.+|+.++|+||||||||||+++|++.+.+..+..+.++.....+ ........ .+... -.....
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~------~~~~~---~~~~~~ 98 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI-------FRLKHLMD------EGKDT---KFLKTV 98 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH-------HHHHHHHH------HTCCS---HHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH-------HHHHHHhc------CchHH---HHHHHh
Confidence 467899999999999999999999999975545444443321100 00000000 00000 112234
Q ss_pred hCCCEEEEcCCCc-HHHH-------HHHHHHHHcCcEEEEEEcCcch
Q 017797 199 HMPEVIIVDEIGT-EAEA-------HACRSIAERGVMLIGTAHGEWL 237 (365)
Q Consensus 199 ~~P~vlilDEp~~-~~d~-------~~i~~~~~~G~tVi~t~H~~~~ 237 (365)
.+|++|++|||+. ++|. +.+....+.|.++|+|||....
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 5999999999984 3332 3344455679999999987643
No 104
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.32 E-value=1.3e-13 Score=122.21 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=74.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------CeEEEEcCCCc-----ccCCCCCch-----hhhhh
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------KRVVIVDTSNE-----IGGDGDIPH-----SAIGT 176 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~---------------~~i~~i~~~~e-----i~~~~~~~~-----~~~~~ 176 (365)
|+.++|+||||||||||++.|+|++. +.+ .++.++.+... +......+. ..++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~~~~v~- 78 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVG- 78 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESS-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCCEEEcCEecchhHhhhceEEEEEEecccceehhhcccccCCccccccccc-
Confidence 67899999999999999999999986 433 11122111100 000000000 0000
Q ss_pred hhhccCCCcchhHHH-HHHH---HHhhCCCEEEEcC--CCcHHH---HHHHHHHHHcCcEEEE----EEcCcchhHHhhh
Q 017797 177 ARRMQVPEPSLQHKV-MIEA---VENHMPEVIIVDE--IGTEAE---AHACRSIAERGVMLIG----TAHGEWLENIIKN 243 (365)
Q Consensus 177 ~~~~~~~S~g~~~r~-~la~---al~~~P~vlilDE--p~~~~d---~~~i~~~~~~G~tVi~----t~H~~~~~~~~~d 243 (365)
.....+|+++++++ ++++ |+..+|++||+|| |+...| .+.+.++.+...++|+ ++|+.+ ..+.+
T Consensus 79 -~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~--~~~vd 155 (189)
T 2i3b_A 79 -QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP--LALVE 155 (189)
T ss_dssp -SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC--CTTHH
T ss_pred -eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCc--hHHHH
Confidence 00112345555444 2233 4688999999999 554343 4667777666655553 238874 23566
Q ss_pred HHHHHHHcCcEEEEec
Q 017797 244 PILSDLIGGVDTVTLG 259 (365)
Q Consensus 244 ~i~~~ll~~g~iv~~g 259 (365)
++. .+.+|+++...
T Consensus 156 ~i~--~~~~~~i~~~~ 169 (189)
T 2i3b_A 156 EIR--NRKDVKVFNVT 169 (189)
T ss_dssp HHH--TTCCSEEEECC
T ss_pred HHe--ecCCcEEEEeC
Confidence 766 77889988753
No 105
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.29 E-value=8.7e-12 Score=116.56 Aligned_cols=119 Identities=12% Similarity=0.110 Sum_probs=73.6
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhccccC---------CCCeEEEEcCCCcccC-------C-CCCchh-------h
Q 017797 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDE---------FQKRVVIVDTSNEIGG-------D-GDIPHS-------A 173 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~---------~~~~i~~i~~~~ei~~-------~-~~~~~~-------~ 173 (365)
-+++|++++|+||||||||||++.+++.+... .+..+.|+........ . ..+... .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~ 105 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADG 105 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCc
Confidence 47899999999999999999999999977542 1345666643221100 0 001100 0
Q ss_pred hhh----hhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc--HHH----------HHHHHHHH-HcCcEEEEEEcCcc
Q 017797 174 IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT--EAE----------AHACRSIA-ERGVMLIGTAHGEW 236 (365)
Q Consensus 174 ~~~----~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~--~~d----------~~~i~~~~-~~G~tVi~t~H~~~ 236 (365)
+.. ......+|+|+.++ +++++.+|++||+|||++ ++| ...+..++ +.|+|||+++|...
T Consensus 106 l~l~~~~~~~~~~ls~g~~~~---i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 106 LLIQPLIGSLPNIMAPEWFDG---LKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp EEECCCTTSCCCTTSHHHHHH---HHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred eEEeecCCCCcccCCHHHHHH---HHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 000 01244567777554 357778999999999998 433 13445554 56999999999987
Q ss_pred hhH
Q 017797 237 LEN 239 (365)
Q Consensus 237 ~~~ 239 (365)
...
T Consensus 183 ~~~ 185 (279)
T 1nlf_A 183 GAA 185 (279)
T ss_dssp ---
T ss_pred ccc
Confidence 553
No 106
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.27 E-value=5e-12 Score=107.70 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=61.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhC
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~ 200 (365)
+|+.++|+||||||||||++++++.+.+. +.++.+++...-.. . ++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~~~~~~~~~~~~------~------------------------~~~~~ 83 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKNAAYIDAASMPL------T------------------------DAAFE 83 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCCEEEEETTTSCC------C------------------------GGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCcEEEEcHHHhhH------H------------------------HHHhC
Confidence 79999999999999999999999999764 55566665432110 0 23568
Q ss_pred CCEEEEcCCCcHHH------HHHHHHHHHcCcE-EEEEEcC
Q 017797 201 PEVIIVDEIGTEAE------AHACRSIAERGVM-LIGTAHG 234 (365)
Q Consensus 201 P~vlilDEp~~~~d------~~~i~~~~~~G~t-Vi~t~H~ 234 (365)
|++|++|||+...+ .+.+..+.++|.+ +|+|+|.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 99999999987322 2445556777887 8888885
No 107
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.23 E-value=7.1e-12 Score=113.69 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=64.5
Q ss_pred hcccCCcEEEEEcCCCCcHHHHHHHHHh--ccccC---CCCeEEEEcCCCcccC---------CCCCchhhhhhhhhccC
Q 017797 117 DLLHYGKSILFVGRPGVGKTTVMREIAR--VLSDE---FQKRVVIVDTSNEIGG---------DGDIPHSAIGTARRMQV 182 (365)
Q Consensus 117 ~~l~~g~~v~iiGpnGsGKTTllr~l~g--ll~~~---~~~~i~~i~~~~ei~~---------~~~~~~~~~~~~~~~~~ 182 (365)
.-+++|++++|+||||||||||++.|++ ++++. .+..+++++....+.. .+..++...........
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 98 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 98 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence 3478899999999999999999999999 45441 1356777765432100 00011100000000111
Q ss_pred CCcchhHHH---HHHHHHhhCCCEEEEcCCCcHHHHH-------------------HHHHH-HHcCcEEEEEEcCcchhH
Q 017797 183 PEPSLQHKV---MIEAVENHMPEVIIVDEIGTEAEAH-------------------ACRSI-AERGVMLIGTAHGEWLEN 239 (365)
Q Consensus 183 ~S~g~~~r~---~la~al~~~P~vlilDEp~~~~d~~-------------------~i~~~-~~~G~tVi~t~H~~~~~~ 239 (365)
.+..+.... ....+...+|++|++|||++..+.. .+..+ .+.|++||+++|.....+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence 222222111 1122223689999999999754321 12222 345999999999876543
No 108
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.21 E-value=1.5e-11 Score=116.94 Aligned_cols=116 Identities=21% Similarity=0.237 Sum_probs=77.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc----------------ccCC----CCCchhhh----h-
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE----------------IGGD----GDIPHSAI----G- 175 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~e----------------i~~~----~~~~~~~~----~- 175 (365)
+|++++|+||||||||||++.|+|++.|+ +++|.+...... +... ...|...+ .
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 58899999999999999999999999987 567776653210 0000 00111000 0
Q ss_pred -hhhh--------ccC-------CCcchhHHHHHHHHHhhCCC--EEEEcCCCcHHHHHHHHHHHHc-CcEEEEEEcCcc
Q 017797 176 -TARR--------MQV-------PEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEAHACRSIAER-GVMLIGTAHGEW 236 (365)
Q Consensus 176 -~~~~--------~~~-------~S~g~~~r~~la~al~~~P~--vlilDEp~~~~d~~~i~~~~~~-G~tVi~t~H~~~ 236 (365)
.... .+. .+...+|+.++++++..+|+ ++++|..+.....+.+..+.+. |.++|++||...
T Consensus 180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 180 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 0000 000 12334788999999999999 7889965555556677777654 999999999865
Q ss_pred h
Q 017797 237 L 237 (365)
Q Consensus 237 ~ 237 (365)
.
T Consensus 260 ~ 260 (304)
T 1rj9_A 260 T 260 (304)
T ss_dssp S
T ss_pred c
Confidence 3
No 109
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.20 E-value=5e-12 Score=135.68 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=75.7
Q ss_pred hccCCCcchhHHHHHHHHHhhCCC--EEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHH
Q 017797 179 RMQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (365)
Q Consensus 179 ~~~~~S~g~~~r~~la~al~~~P~--vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~l 249 (365)
....+|+|++||+.||++|.++|+ +||+||||+++|+ +.++.+.+.|.|||+++|+++++. .||+++ .
T Consensus 461 ~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~-~aD~ii--~ 537 (916)
T 3pih_A 461 SATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIR-NADHII--D 537 (916)
T ss_dssp BGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHH-TCSEEE--E
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEE--E
Confidence 345689999999999999999887 9999999999984 456666677999999999999875 499999 8
Q ss_pred H------cCcEEEEecCHHHHHHhc
Q 017797 250 I------GGVDTVTLGDEEARARRC 268 (365)
Q Consensus 250 l------~~g~iv~~g~~~~~~~~~ 268 (365)
| ++|++++.|++++++..+
T Consensus 538 lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 538 IGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp EESSSGGGCSEEEEEECHHHHHHSC
T ss_pred EcCCcccCCCEEEEeechhhhhcCc
Confidence 8 899999999999987643
No 110
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.14 E-value=1.7e-11 Score=104.36 Aligned_cols=69 Identities=10% Similarity=0.012 Sum_probs=56.6
Q ss_pred hccCCCcchhHHHHHH------HHHhhCCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHH
Q 017797 179 RMQVPEPSLQHKVMIE------AVENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPI 245 (365)
Q Consensus 179 ~~~~~S~g~~~r~~la------~al~~~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i 245 (365)
....+|+||+|++++| +++..+|+++++||||+++|.. .+..+.+.|.+||++||+.+ ...+||++
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d~i 132 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADHV 132 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSEE
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCCEE
Confidence 4567899999999876 7899999999999999999963 34444456899999999995 45688888
Q ss_pred HHHHH
Q 017797 246 LSDLI 250 (365)
Q Consensus 246 ~~~ll 250 (365)
+ ++
T Consensus 133 i--~l 135 (148)
T 1f2t_B 133 I--RI 135 (148)
T ss_dssp E--EE
T ss_pred E--EE
Confidence 8 66
No 111
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.11 E-value=2.3e-10 Score=103.61 Aligned_cols=133 Identities=13% Similarity=0.062 Sum_probs=73.3
Q ss_pred hcccCCcEEEEEcCCCCcHHHHHHHHHhccccC-CCCeEEEEcCCC---cccCCCCCchhh--hhh-------hhhccCC
Q 017797 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSN---EIGGDGDIPHSA--IGT-------ARRMQVP 183 (365)
Q Consensus 117 ~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~-~~~~i~~i~~~~---ei~~~~~~~~~~--~~~-------~~~~~~~ 183 (365)
..+++|++++|+||||||||||+++|+|+++|+ ....+.+...+. +......+++.. +.. .......
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 347889999999999999999999999998752 122222222111 111111122211 000 0011111
Q ss_pred --CcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHH---HHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEe
Q 017797 184 --EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH---ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (365)
Q Consensus 184 --S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~---~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~ 258 (365)
..|.... . ....+..++++|+| +|+. .+......|.+||+++|+.+++.. + ++.+| .
T Consensus 91 ~~~yg~~~~-~-v~~~l~~G~illLD-----LD~~~~~~i~~~l~~~~tI~i~th~~~~l~~---R----l~~rG----~ 152 (219)
T 1s96_A 91 GNYYGTSRE-A-IEQVLATGVDVFLD-----IDWQGAQQIRQKMPHARSIFILPPSKIELDR---R----LRGRG----Q 152 (219)
T ss_dssp TEEEEEEHH-H-HHHHHTTTCEEEEE-----CCHHHHHHHHHHCTTCEEEEEECSSHHHHHH---H----HHTTS----C
T ss_pred hccCCCCHH-H-HHHHHhcCCeEEEE-----ECHHHHHHHHHHccCCEEEEEECCCHHHHHH---H----HHHcC----C
Confidence 1122211 2 33345568999999 5544 344433468999999999886644 2 56677 6
Q ss_pred cCHHHHHHh
Q 017797 259 GDEEARARR 267 (365)
Q Consensus 259 g~~~~~~~~ 267 (365)
++++++...
T Consensus 153 ~~~e~i~~r 161 (219)
T 1s96_A 153 DSEEVIAKR 161 (219)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 777777643
No 112
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.08 E-value=3.2e-11 Score=129.48 Aligned_cols=85 Identities=15% Similarity=0.084 Sum_probs=74.8
Q ss_pred hccCCCcchhHHHHHHHHHhhC--CCEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHH
Q 017797 179 RMQVPEPSLQHKVMIEAVENHM--PEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (365)
Q Consensus 179 ~~~~~S~g~~~r~~la~al~~~--P~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~l 249 (365)
....+|+|++||+.||++|.++ |+++||||||+++|+ +.++.+++.|.|||+++|+.++.. .||+++ .
T Consensus 518 ~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi--~ 594 (993)
T 2ygr_A 518 AAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADWIV--D 594 (993)
T ss_dssp BGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSEEE--E
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCEEE--E
Confidence 3456799999999999999998 599999999999884 456667788999999999999875 799999 8
Q ss_pred H------cCcEEEEecCHHHHHH
Q 017797 250 I------GGVDTVTLGDEEARAR 266 (365)
Q Consensus 250 l------~~g~iv~~g~~~~~~~ 266 (365)
| ++|++++.|+++++..
T Consensus 595 Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 595 IGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp ECSSSGGGCCSCCEEECHHHHHH
T ss_pred ecCccccCCCEEEEeeCHHHhhh
Confidence 8 6899999999999876
No 113
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.06 E-value=2.9e-11 Score=129.43 Aligned_cols=85 Identities=15% Similarity=0.123 Sum_probs=74.3
Q ss_pred hccCCCcchhHHHHHHHHHhhCC--CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHH
Q 017797 179 RMQVPEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (365)
Q Consensus 179 ~~~~~S~g~~~r~~la~al~~~P--~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~l 249 (365)
....+|+|++||+.||++|.++| +++||||||+++|+ +.++.+++.|.|||+++|+++++. .||+++ .
T Consensus 501 ~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi--~ 577 (972)
T 2r6f_A 501 SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLI--D 577 (972)
T ss_dssp BGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEE--E
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEE--E
Confidence 34567999999999999999985 99999999999883 556777788999999999999875 699999 8
Q ss_pred H------cCcEEEEecCHHHHHH
Q 017797 250 I------GGVDTVTLGDEEARAR 266 (365)
Q Consensus 250 l------~~g~iv~~g~~~~~~~ 266 (365)
| ++|++++.|+++++..
T Consensus 578 LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 578 IGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp ECSSSGGGCCSEEEEECTTTTTT
T ss_pred eCCCccCCCCEEEEecCHHHHHh
Confidence 8 6899999999998764
No 114
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.05 E-value=1.4e-11 Score=116.82 Aligned_cols=126 Identities=13% Similarity=0.086 Sum_probs=60.5
Q ss_pred eEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhc-cccCCC--------------CeEEEEcCCCcc
Q 017797 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV-LSDEFQ--------------KRVVIVDTSNEI 163 (365)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gl-l~~~~~--------------~~i~~i~~~~ei 163 (365)
+|+++|++..+ ++++++.+ +|+||||||||||++.|.|. +.++.+ ..+.++.+....
T Consensus 3 ~l~~~~~~~~~--l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 3 NLPNQVHRKSV--KKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC------------------------CEEEEC---C
T ss_pred CCcceECCEEE--EcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCc
Confidence 78999988766 88888765 99999999999999999997 554422 011111111100
Q ss_pred cC------CCCCc---h--hhhhh-h--------hhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCcH-HHH---HHHH
Q 017797 164 GG------DGDIP---H--SAIGT-A--------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE-AEA---HACR 219 (365)
Q Consensus 164 ~~------~~~~~---~--~~~~~-~--------~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~~-~d~---~~i~ 219 (365)
.. ..+.. . ..... . .....+|+|++|++.+++++. ++++|||++. +|. +.++
T Consensus 75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~ 150 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMK 150 (301)
T ss_dssp CEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHH
T ss_pred ccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHH
Confidence 00 00000 0 00000 0 223445778887765555543 9999999763 553 5555
Q ss_pred HHHHc-CcEEEEEEcCcc
Q 017797 220 SIAER-GVMLIGTAHGEW 236 (365)
Q Consensus 220 ~~~~~-G~tVi~t~H~~~ 236 (365)
.+.+. +++++++.|++.
T Consensus 151 ~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 151 AIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHTTTSCEEEEECCGGGS
T ss_pred HHHhcCCEEEEEEeCCCC
Confidence 55543 789999999975
No 115
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.02 E-value=5.4e-12 Score=130.74 Aligned_cols=165 Identities=13% Similarity=0.115 Sum_probs=74.2
Q ss_pred eeeEEEEECCcccCcchhhhhc--------ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE-------EEcCC-
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDL--------LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------IVDTS- 160 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~--------l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~-------~i~~~- 160 (365)
+++++..|......+++.++.. +.- ..++|+|||||||||||++|+|+..|...+.|. .....
T Consensus 13 ~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~l-p~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~ 91 (608)
T 3szr_A 13 ENNLCSQYEEKVRPCIDLIDSLRALGVEQDLAL-PAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVN 91 (608)
T ss_dssp -------CHHHHHHHHHHHHHHHHHSCCSSCCC-CCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSS
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccC-CeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCc
Confidence 4578877765432224444321 111 139999999999999999999998772122221 11111
Q ss_pred -CcccC-CCCCchh-------hhhh----h-hhccC-CCcchhHHHHHHHHHhhCCCEEEEcCC------CcHHHH----
Q 017797 161 -NEIGG-DGDIPHS-------AIGT----A-RRMQV-PEPSLQHKVMIEAVENHMPEVIIVDEI------GTEAEA---- 215 (365)
Q Consensus 161 -~ei~~-~~~~~~~-------~~~~----~-~~~~~-~S~g~~~r~~la~al~~~P~vlilDEp------~~~~d~---- 215 (365)
.++.. .+.+++. .+.. . ..... ..+.....+.++.+....|+++++||| ++++|.
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 92 EDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp SSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred cccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 11100 0111111 0000 0 00000 000000001111112346999999999 776662
Q ss_pred ---HHHHHHHH--cCcEEEEEEcCcchhHHhhhHHHHHHHcCc--EEEEecCHH
Q 017797 216 ---HACRSIAE--RGVMLIGTAHGEWLENIIKNPILSDLIGGV--DTVTLGDEE 262 (365)
Q Consensus 216 ---~~i~~~~~--~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g--~iv~~g~~~ 262 (365)
+++..+.. .+.++++++|+.+.+...+.+++..+...| .++....++
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred HHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 34555432 368889999999877666666665444333 244444443
No 116
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.01 E-value=1e-10 Score=113.71 Aligned_cols=133 Identities=11% Similarity=0.072 Sum_probs=75.1
Q ss_pred chhhhhcccC--CcEEEEEcCCCCcHHHHHHHHHhccccCCC---CeEEEEcC---CCcccCC-CCC------chhhh-h
Q 017797 112 IDMVYDLLHY--GKSILFVGRPGVGKTTVMREIARVLSDEFQ---KRVVIVDT---SNEIGGD-GDI------PHSAI-G 175 (365)
Q Consensus 112 ~~~l~~~l~~--g~~v~iiGpnGsGKTTllr~l~gll~~~~~---~~i~~i~~---~~ei~~~-~~~------~~~~~-~ 175 (365)
.+.+++.+.+ |+.++|+||||||||||+++|+|+++++.+ +++. +++ ..++... ..+ .+... .
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~-i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREF-VFEKLGGDEQAMQYSDYPQMALGHQRYIDY 236 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHH-HHHSSSSCTTSSCTTTHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHH-HHhhcCCCcccCChhHHHHHHHHHHHHHHH
Confidence 3456677888 999999999999999999999999988641 2222 110 0011000 000 00000 0
Q ss_pred hh---hhc------------cCCCcchhHHHHHHHHH-hhCCCEEEEcC---CCc------HHH-------HHHHHHHH-
Q 017797 176 TA---RRM------------QVPEPSLQHKVMIEAVE-NHMPEVIIVDE---IGT------EAE-------AHACRSIA- 222 (365)
Q Consensus 176 ~~---~~~------------~~~S~g~~~r~~la~al-~~~P~vlilDE---p~~------~~d-------~~~i~~~~- 222 (365)
.. ..+ ...+.+.+++..++++. ..+|+++++|| |+. ++| .+++.++.
T Consensus 237 ~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~ 316 (365)
T 1lw7_A 237 AVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLD 316 (365)
T ss_dssp HHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHH
T ss_pred HHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHH
Confidence 00 000 01122334455555555 46999999999 653 344 23344433
Q ss_pred HcCcEEEEEEcCcchhHHhhhHHH
Q 017797 223 ERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 223 ~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
+.|.+|++.+|.. ..+.+++.+.
T Consensus 317 ~~~~~ililde~~-~~~r~~~~i~ 339 (365)
T 1lw7_A 317 KYKVPYIEIESPS-YLDRYNQVKA 339 (365)
T ss_dssp GGGCCCEEEECSS-HHHHHHHHHH
T ss_pred HcCCCEEEeCCCC-HHHHHHHHHH
Confidence 3488999998874 5667787766
No 117
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.99 E-value=6.8e-11 Score=125.93 Aligned_cols=85 Identities=13% Similarity=0.082 Sum_probs=74.0
Q ss_pred hccCCCcchhHHHHHHHHHhhCCC--EEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHH
Q 017797 179 RMQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (365)
Q Consensus 179 ~~~~~S~g~~~r~~la~al~~~P~--vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~l 249 (365)
....+|+|++||+.||++|.++|+ ++||||||+++|+ ++++.+++.|.|||+++|++++.. .||+++ .
T Consensus 376 ~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~-~aD~ii--~ 452 (842)
T 2vf7_A 376 STPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR-RADWLV--D 452 (842)
T ss_dssp BGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT-TCSEEE--E
T ss_pred CcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH-hCCEEE--E
Confidence 355679999999999999999995 9999999999873 456677788999999999998765 699999 8
Q ss_pred H------cCcEEEEecCHHHHHH
Q 017797 250 I------GGVDTVTLGDEEARAR 266 (365)
Q Consensus 250 l------~~g~iv~~g~~~~~~~ 266 (365)
| ++|++++.|+++++..
T Consensus 453 lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 453 VGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp ECSSSGGGCCSEEEEECGGGGGG
T ss_pred eCCCcccCCCEEEEecCHHHHHh
Confidence 8 6899999999998765
No 118
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.95 E-value=6.8e-11 Score=117.02 Aligned_cols=131 Identities=11% Similarity=0.012 Sum_probs=70.9
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC--------------eEEEEcCCCc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------RVVIVDTSNE 162 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~--------------~i~~i~~~~e 162 (365)
+.+++++|++..+ ++++++.+ +|+||||||||||+++|+|...+..+. .+.++.+...
T Consensus 14 ~~~l~~~y~~~~v--l~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~ 85 (418)
T 2qag_C 14 FANLPNQVYRKSV--KRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGG 85 (418)
T ss_dssp -CCCCCCTTTTTC--C-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-----
T ss_pred EEecceeECCEEE--ecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCC
Confidence 5578888877655 77777765 999999999999999999987632110 0111111110
Q ss_pred ccC------CCCCchhh-----hhhh-hh-ccCCCcchhHHHHHHHHHhhCCC---EEEEcCCC-cH---HHHHHHHHHH
Q 017797 163 IGG------DGDIPHSA-----IGTA-RR-MQVPEPSLQHKVMIEAVENHMPE---VIIVDEIG-TE---AEAHACRSIA 222 (365)
Q Consensus 163 i~~------~~~~~~~~-----~~~~-~~-~~~~S~g~~~r~~la~al~~~P~---vlilDEp~-~~---~d~~~i~~~~ 222 (365)
+.. ..++.... .... .. -..++.++++++.+++++..+|+ +|++|||| .+ .|...+..+.
T Consensus 86 ~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~ 165 (418)
T 2qag_C 86 VQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH 165 (418)
T ss_dssp -CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT
T ss_pred cccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh
Confidence 000 00000000 0000 00 00012234445567888889999 99999998 34 4455666665
Q ss_pred HcCcEEEEEEcCcc
Q 017797 223 ERGVMLIGTAHGEW 236 (365)
Q Consensus 223 ~~G~tVi~t~H~~~ 236 (365)
. ++.+|.+.|-.+
T Consensus 166 ~-~v~iIlVinK~D 178 (418)
T 2qag_C 166 E-KVNIIPLIAKAD 178 (418)
T ss_dssp T-TSEEEEEEESTT
T ss_pred c-cCcEEEEEEccc
Confidence 4 777777776554
No 119
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.94 E-value=7.2e-12 Score=109.92 Aligned_cols=45 Identities=11% Similarity=-0.107 Sum_probs=30.7
Q ss_pred HHHHHHHHcCcEEEEEEcC-cchhHHhhhHHHHHHHcCcEEEEecCHHHH
Q 017797 216 HACRSIAERGVMLIGTAHG-EWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (365)
Q Consensus 216 ~~i~~~~~~G~tVi~t~H~-~~~~~~~~d~i~~~ll~~g~iv~~g~~~~~ 264 (365)
+.+..+.+.+.++|.|+|. ++.++.+|++++ ++|++++.|+++-+
T Consensus 137 ~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~----~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 137 EEFESKGIDERYFYNTSHLQPTNLNDIVKNLK----TNPRFIFCMAGDPL 182 (189)
T ss_dssp HHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH----HCGGGSCC------
T ss_pred HHHhhcCCCccEEEeCCCCChhhHHHHHHHHh----hCCcEEEeecCCch
Confidence 3444444557899999999 888999999887 67898888877643
No 120
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.94 E-value=6.5e-11 Score=101.84 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=42.8
Q ss_pred eEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC
Q 017797 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF 150 (365)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~ 150 (365)
+++++|+...+ ++++++.+++|++++|+||||||||||+|+|+|++ |..
T Consensus 12 ~~~~~~g~~~~--l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~ 60 (158)
T 1htw_A 12 FSMLRFGKKFA--EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQ 60 (158)
T ss_dssp HHHHHHHHHHH--HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCC
T ss_pred HHHHHHHHHHH--HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCC
Confidence 56667765555 88999999999999999999999999999999999 763
No 121
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.93 E-value=4.8e-10 Score=99.21 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=33.3
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
+++++++|+. .. +++ +.+.+|..++|+|+||||||||++.|+|..
T Consensus 6 ~~~~~~~~~~-~~--l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 6 YQQTHFVMSA-PD--IRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp -----CEEEE-SS--GGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred hhhhhheeec-CC--HhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5688999963 22 555 667889999999999999999999999987
No 122
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.93 E-value=2.7e-12 Score=114.56 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=31.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN 161 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ 161 (365)
.++|++++|+|||||||||++++|+|++.+ .+.++++..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----~i~~v~~d~ 41 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----RVALLPMDH 41 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----GEEEEEGGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----CeEEEecCc
Confidence 357889999999999999999999999875 466666543
No 123
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.91 E-value=4.2e-09 Score=103.62 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=67.1
Q ss_pred hcccCCcEEEEEcCCCCcHHHHHHHH--HhccccCC---CCeEEEEcCCCcccC--------CCCC-chhhhhhhhhccC
Q 017797 117 DLLHYGKSILFVGRPGVGKTTVMREI--ARVLSDEF---QKRVVIVDTSNEIGG--------DGDI-PHSAIGTARRMQV 182 (365)
Q Consensus 117 ~~l~~g~~v~iiGpnGsGKTTllr~l--~gll~~~~---~~~i~~i~~~~ei~~--------~~~~-~~~~~~~~~~~~~ 182 (365)
.-+++|++++|+||||||||||++.+ .++.+++. +..++|++....+.. ..++ ++..........
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~- 251 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYAR- 251 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE-
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEec-
Confidence 34788999999999999999999954 56665532 356888865432210 0011 110000000001
Q ss_pred CCcchhHHHHHH----HHHhhCCCEEEEcCCCcHHH-------------------HHHHHHHH-HcCcEEEEEEcCcc
Q 017797 183 PEPSLQHKVMIE----AVENHMPEVIIVDEIGTEAE-------------------AHACRSIA-ERGVMLIGTAHGEW 236 (365)
Q Consensus 183 ~S~g~~~r~~la----~al~~~P~vlilDEp~~~~d-------------------~~~i~~~~-~~G~tVi~t~H~~~ 236 (365)
......+...+. .+...+|++|++|||++..+ ...++.++ +.|++||+++|...
T Consensus 252 ~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~ 329 (400)
T 3lda_A 252 AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVA 329 (400)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecc
Confidence 112222222222 22336899999999987432 12344454 45999999999854
No 124
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.88 E-value=4.6e-09 Score=100.71 Aligned_cols=116 Identities=23% Similarity=0.193 Sum_probs=73.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc--------------cc--CC----CCCchhhhh----
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE--------------IG--GD----GDIPHSAIG---- 175 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~e--------------i~--~~----~~~~~~~~~---- 175 (365)
++|++++|+||||||||||++.|+|++.++ +++|.+...... +. .. ...|...+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 578999999999999999999999999887 566766643211 00 00 011111100
Q ss_pred h--hhh--------ccC---CCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHH-cCcEEEEEEcCcc
Q 017797 176 T--ARR--------MQV---PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAE-RGVMLIGTAHGEW 236 (365)
Q Consensus 176 ~--~~~--------~~~---~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~-~G~tVi~t~H~~~ 236 (365)
. ... .+. ...-+.+-..+++++..++.++++|.++...-.+.++.+.+ .|.++++.||...
T Consensus 206 ~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 206 HAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp HHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred HHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 0 000 001 11223344457788888888999998877644566666653 5899999999543
No 125
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.84 E-value=1.5e-09 Score=103.07 Aligned_cols=92 Identities=25% Similarity=0.272 Sum_probs=62.8
Q ss_pred hcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchh-hhh---hhhhccCCCcchhHHH-
Q 017797 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHS-AIG---TARRMQVPEPSLQHKV- 191 (365)
Q Consensus 117 ~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~-~~~---~~~~~~~~S~g~~~r~- 191 (365)
+...++++++|+|||||||||+++.|++++.+. +++|.+++....-.. ...+. ... ........++++.+++
T Consensus 99 ~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D~~r~~--a~eqL~~~~~~~gl~~~~~~s~~~~~~v~ 175 (306)
T 1vma_A 99 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAADTFRAA--AIEQLKIWGERVGATVISHSEGADPAAVA 175 (306)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECTTCHH--HHHHHHHHHHHHTCEEECCSTTCCHHHHH
T ss_pred ccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEccccccHH--HHHHHHHHHHHcCCcEEecCCccCHHHHH
Confidence 335678899999999999999999999999876 677777653221000 00000 000 0011223466777777
Q ss_pred --HHHHHHhhCCCEEEEcCCCc
Q 017797 192 --MIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 192 --~la~al~~~P~vlilDEp~~ 211 (365)
++++++..+||++|+|||+.
T Consensus 176 ~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 176 FDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHHhcCCCEEEEECCCc
Confidence 78888999999999999976
No 126
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.83 E-value=5.5e-09 Score=98.75 Aligned_cols=131 Identities=16% Similarity=0.086 Sum_probs=77.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhh-hhhcc--C--CCcchhHHHHHH
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQ--V--PEPSLQHKVMIE 194 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~-~~~~~--~--~S~g~~~r~~la 194 (365)
.+|++++|+|||||||||+++.|++.+.+..|.+|.+++....-. . ....+.. ....+ . .......+.+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~---~-a~eqL~~~~~~~gl~~~~~~~~~~l~~al~ 178 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI---A-AVEQLKTYAELLQAPLEVCYTKEEFQQAKE 178 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST---T-HHHHHHHHHTTTTCCCCBCSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc---h-HHHHHHHHHHhcCCCeEecCCHHHHHHHHH
Confidence 468899999999999999999999999875577888887543110 0 0000000 01111 1 111222333444
Q ss_pred HHHhhCCCEEEEcCCCc-HHHHHH---HHHHH----HcCcEEEE-EEcCcchhHHhhhHHHHHHHcCcEEEEe
Q 017797 195 AVENHMPEVIIVDEIGT-EAEAHA---CRSIA----ERGVMLIG-TAHGEWLENIIKNPILSDLIGGVDTVTL 258 (365)
Q Consensus 195 ~al~~~P~vlilDEp~~-~~d~~~---i~~~~----~~G~tVi~-t~H~~~~~~~~~d~i~~~ll~~g~iv~~ 258 (365)
...+||++|+|.|.. ..+... +..+. ..++.+++ ++|..+.+..+++.+. .++.+.+|..
T Consensus 179 --~~~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~--~l~~~giVlt 247 (296)
T 2px0_A 179 --LFSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS--SVPVNQYIFT 247 (296)
T ss_dssp --HGGGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS--SSCCCEEEEE
T ss_pred --HhcCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh--cCCCCEEEEe
Confidence 458999999996633 112222 22332 22334444 5788777777777766 5566666654
No 127
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.80 E-value=1.2e-08 Score=92.20 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=34.7
Q ss_pred chhh-hhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 017797 112 IDMV-YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (365)
Q Consensus 112 ~~~l-~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~ 159 (365)
++.+ ..-+++|++++|+||||||||||+..++....+. +.++.|+..
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~ 59 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVAL 59 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEES
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEc
Confidence 5554 5568899999999999999999976665544333 567777754
No 128
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.77 E-value=2.1e-09 Score=109.15 Aligned_cols=65 Identities=9% Similarity=0.074 Sum_probs=56.7
Q ss_pred CcchhHHHHHHHHHhhCC--CEEEEcCCCcHHHH-------HHHHHHHHcCcEEEEEEcCcchhHHhhhHHHHHHHcC
Q 017797 184 EPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 252 (365)
Q Consensus 184 S~g~~~r~~la~al~~~P--~vlilDEp~~~~d~-------~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~ 252 (365)
|+|++||+++|+++.++| ++||+|||++++|. +.+..+++ |++||++||+.+.+. .||+++ ++.+
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~~--~~~~ 472 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHHY--KVEK 472 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEEE--EEEC
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEE--EEec
Confidence 999999999999999999 99999999999984 44555665 899999999998775 699998 7744
No 129
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=1.6e-08 Score=96.81 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=29.0
Q ss_pred chhhhhcc-cCC--cEEEEEcCCCCcHHHHHHHHHh-ccccC
Q 017797 112 IDMVYDLL-HYG--KSILFVGRPGVGKTTVMREIAR-VLSDE 149 (365)
Q Consensus 112 ~~~l~~~l-~~g--~~v~iiGpnGsGKTTllr~l~g-ll~~~ 149 (365)
...+...+ ..| ..++|.||||+||||+++++++ +..++
T Consensus 23 ~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~ 64 (354)
T 1sxj_E 23 TNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 64 (354)
T ss_dssp HHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTT
T ss_pred HHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 44555555 444 3499999999999999999999 56655
No 130
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.70 E-value=1e-08 Score=96.82 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=63.3
Q ss_pred hhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchh-hhhhhhhccCC------Ccc
Q 017797 114 MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHS-AIGTARRMQVP------EPS 186 (365)
Q Consensus 114 ~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~-~~~~~~~~~~~------S~g 186 (365)
++++. +|++++|+|+||+||||+++.|++++.+. +++|.+++....-.. ...+. .......+.+. ++.
T Consensus 92 ~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~~~~--~~~ql~~~~~~~~l~~~~~~~~~~p~ 166 (295)
T 1ls1_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPA--AREQLRLLGEKVGVPVLEVMDGESPE 166 (295)
T ss_dssp CCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSSCHH--HHHHHHHHHHHHTCCEEECCTTCCHH
T ss_pred eeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcccHh--HHHHHHHhcccCCeEEEEcCCCCCHH
Confidence 44454 78999999999999999999999999876 678887765432100 00000 00000001111 222
Q ss_pred hhHHHHHHHHHhhCCCEEEEcCC-CcHHHHHH
Q 017797 187 LQHKVMIEAVENHMPEVIIVDEI-GTEAEAHA 217 (365)
Q Consensus 187 ~~~r~~la~al~~~P~vlilDEp-~~~~d~~~ 217 (365)
.-++.+++.++..++|++|+||| +.+.|...
T Consensus 167 ~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~ 198 (295)
T 1ls1_A 167 SIRRRVEEKARLEARDLILVDTAGRLQIDEPL 198 (295)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCSSCCHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCccccHHH
Confidence 33466788887899999999999 76666433
No 131
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.70 E-value=4.8e-08 Score=94.36 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=68.6
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCC----CCCchhhhhhhhhccCCCcchhHHHHH
Q 017797 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----GDIPHSAIGTARRMQVPEPSLQHKVMI 193 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~----~~~~~~~~~~~~~~~~~S~g~~~r~~l 193 (365)
-+++|++++|.||||||||||+..++...... +..+.|++........ .++....+. -.. .. ...+...+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~E~~~~~~~a~~lG~~~~~l~---i~~-~~-~~e~~l~~ 130 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDAEHALDPEYAKKLGVDTDSLL---VSQ-PD-TGEQALEI 130 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHHHHHTTCCGGGCE---EEC-CS-SHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCcCHHHHHHcCCCHHHeE---Eec-CC-CHHHHHHH
Confidence 46789999999999999999998888766544 5678888754322100 001000000 001 11 12233445
Q ss_pred HHHHh--hCCCEEEEcCCCcHH----------H----------HHHHHHH----HHcCcEEEEEEcCcc
Q 017797 194 EAVEN--HMPEVIIVDEIGTEA----------E----------AHACRSI----AERGVMLIGTAHGEW 236 (365)
Q Consensus 194 a~al~--~~P~vlilDEp~~~~----------d----------~~~i~~~----~~~G~tVi~t~H~~~ 236 (365)
+.++. .+|++||+||++... | .+.++.+ .+.|++||+++|...
T Consensus 131 ~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 131 ADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp HHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred HHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 55554 459999999997632 2 1223333 467999999999765
No 132
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.69 E-value=3.2e-09 Score=103.01 Aligned_cols=77 Identities=13% Similarity=0.051 Sum_probs=62.9
Q ss_pred CCCcchhHHHHHHHHHh---------hCCCEEEEcCCCcHHHHHH----HHHHHHcCcEEEEEEcCcchhHHhhhHHHHH
Q 017797 182 VPEPSLQHKVMIEAVEN---------HMPEVIIVDEIGTEAEAHA----CRSIAERGVMLIGTAHGEWLENIIKNPILSD 248 (365)
Q Consensus 182 ~~S~g~~~r~~la~al~---------~~P~vlilDEp~~~~d~~~----i~~~~~~G~tVi~t~H~~~~~~~~~d~i~~~ 248 (365)
.+|+||+|++++|++|+ .+|++|++|||++++|... +..+.+.+.++|+++|. +. .|++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~~~i~-- 338 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GAALTL-- 338 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TCSEEE--
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cCCEEE--
Confidence 35999999999999999 7999999999999999632 22333435788999994 43 889999
Q ss_pred HHcCcEEEEecCHHHH
Q 017797 249 LIGGVDTVTLGDEEAR 264 (365)
Q Consensus 249 ll~~g~iv~~g~~~~~ 264 (365)
.+++|+++..|+++++
T Consensus 339 ~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 339 RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEETTEEEECCCTTTS
T ss_pred EEECCEEEecCCHHHH
Confidence 8999999999888764
No 133
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.62 E-value=8.9e-08 Score=94.57 Aligned_cols=136 Identities=13% Similarity=0.154 Sum_probs=83.0
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc-------CCCCeEEEEcC-----------CCcccC---CCCC
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-------EFQKRVVIVDT-----------SNEIGG---DGDI 169 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~-------~~~~~i~~i~~-----------~~ei~~---~~~~ 169 (365)
....+++.++.+..++|+|+|||||||||++|++..+. +....+.++.. +..+.. ...+
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L 225 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGL 225 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCS
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhh
Confidence 45678888999999999999999999999999998421 11122333322 111100 0001
Q ss_pred chhhhhh--------------hhhccCCCcchhHHHHHHHHHhhCCCEEEE---cCCCcHHHHHHHHHH-HHcCcEEEEE
Q 017797 170 PHSAIGT--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV---DEIGTEAEAHACRSI-AERGVMLIGT 231 (365)
Q Consensus 170 ~~~~~~~--------------~~~~~~~S~g~~~r~~la~al~~~P~vlil---DEp~~~~d~~~i~~~-~~~G~tVi~t 231 (365)
....... ......+|.+++++..+++++...|.+|++ |-+.. ...+.+... .+.|.+++.+
T Consensus 226 ~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~vi~i 304 (416)
T 1udx_A 226 GLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALADALAREGLAVLPV 304 (416)
T ss_dssp CHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHHHHHHTTTSCEEEC
T ss_pred hHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHHHHHHHhcCCeEEEE
Confidence 1110000 011223477899999999999999999998 33332 223334333 3457776655
Q ss_pred E-cCcchhHHhhhHHHH
Q 017797 232 A-HGEWLENIIKNPILS 247 (365)
Q Consensus 232 ~-H~~~~~~~~~d~i~~ 247 (365)
| |...-++.+.+.+..
T Consensus 305 SA~~g~gi~eL~~~i~~ 321 (416)
T 1udx_A 305 SALTGAGLPALKEALHA 321 (416)
T ss_dssp CTTTCTTHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHH
Confidence 5 666667778888775
No 134
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.58 E-value=6.8e-08 Score=96.94 Aligned_cols=46 Identities=30% Similarity=0.337 Sum_probs=39.2
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
.+++++.+.+|++++|+||||||||||++.|+|++.+. +++|.+..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~g 328 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAA 328 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEec
Confidence 34566778899999999999999999999999999876 56777654
No 135
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.55 E-value=1.7e-07 Score=94.06 Aligned_cols=97 Identities=21% Similarity=0.366 Sum_probs=62.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCC
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 202 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~ 202 (365)
..++|+||||+||||+++++++.... .+..+... ++ .. .-...++.+.+..+..|....|.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~----~f~~is~~-~~------~~--------~~~g~~~~~~r~lf~~A~~~~p~ 110 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANV----PFFHISGS-DF------VE--------LFVGVGAARVRDLFAQAKAHAPC 110 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTC----CEEEEEGG-GT------TT--------CCTTHHHHHHHHHHHHHHHTCSE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC----CeeeCCHH-HH------HH--------HHhcccHHHHHHHHHHHHhcCCC
Confidence 34899999999999999999997632 33333221 11 00 01122456677889999999999
Q ss_pred EEEEcCCCc----------HHH------H-HHHHHH----HHcCcEEEEEEcCcchh
Q 017797 203 VIIVDEIGT----------EAE------A-HACRSI----AERGVMLIGTAHGEWLE 238 (365)
Q Consensus 203 vlilDEp~~----------~~d------~-~~i~~~----~~~G~tVi~t~H~~~~~ 238 (365)
+|++||+.. +.+ . .++..+ ...++.||+++|..+..
T Consensus 111 ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 111 IVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp EEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred EEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 999999943 111 1 222222 13578999999987643
No 136
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.52 E-value=3.3e-09 Score=103.96 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=45.2
Q ss_pred CC--CEEEEcCCCcHHHHHHHHH-------H-HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCc-EEEEecCHH
Q 017797 200 MP--EVIIVDEIGTEAEAHACRS-------I-AERGVMLIGTAHGEWLENIIKNPILSDLIGGV-DTVTLGDEE 262 (365)
Q Consensus 200 ~P--~vlilDEp~~~~d~~~i~~-------~-~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g-~iv~~g~~~ 262 (365)
+| |+.++|||+...|++.+.. . ...|.|++ +|....+..+|+++.. ++..| +.+..|+..
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~-~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQ-YLTETKQPIRKGDWS 209 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHH-HHHTTCSCGGGSCCC
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHH-HhccCCceeecCCCC
Confidence 78 9999999999988755432 2 33466764 9999999999999985 77888 777655543
No 137
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.51 E-value=9.4e-09 Score=98.89 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=48.3
Q ss_pred eeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 98 ~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
++++++|+...+ ++++++.+.+|++++|+||||||||||+++|+|++.++ +++|.++.
T Consensus 33 ~~~~~~~~~~~~--l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~-~g~v~i~~ 90 (337)
T 2qm8_A 33 RRADHRAAVRDL--IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA-GHKVAVLA 90 (337)
T ss_dssp SSHHHHHHHHHH--HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCcccccChHHH--HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC-CCEEEEEE
Confidence 356666655445 89999999999999999999999999999999999887 56666654
No 138
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.46 E-value=4.5e-07 Score=87.71 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=36.6
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC
Q 017797 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN 161 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ 161 (365)
-+++|+++.|.||||||||||+..++....+. ++.+.|++...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEeccc
Confidence 46789999999999999999999999988765 56788887543
No 139
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.46 E-value=7.7e-08 Score=84.69 Aligned_cols=31 Identities=19% Similarity=0.488 Sum_probs=26.4
Q ss_pred hcccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 117 ~~l~~g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
+.+.+|++++|+|||||||||++++|+|+++
T Consensus 2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 2 NAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4467899999999999999999999999964
No 140
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.45 E-value=1.2e-07 Score=98.04 Aligned_cols=45 Identities=22% Similarity=0.549 Sum_probs=39.2
Q ss_pred ECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC
Q 017797 104 VGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF 150 (365)
Q Consensus 104 ~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~ 150 (365)
|+...+ ++.+++.+..|+.++|+||||+||||++++|++++++..
T Consensus 44 ~G~~~~--l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 44 IGQEHA--VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp CSCHHH--HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred ECchhh--HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 444444 788999999999999999999999999999999998764
No 141
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.44 E-value=5.7e-08 Score=87.77 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=22.7
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHH-hccc
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIA-RVLS 147 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~-gll~ 147 (365)
..++++.+++|++++|+|||||||||++++|+ ++++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 67889999999999999999999999999999 9874
No 142
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.43 E-value=6.4e-07 Score=81.10 Aligned_cols=113 Identities=13% Similarity=0.129 Sum_probs=64.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-cccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHh
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~-ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~ 198 (365)
.+|.++++.||+|+||||++..++.-+... +.++.++.... .-.......+..+. .....+.+. ...+..+..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~-g~kVli~~~~~d~r~~~~i~srlG~~-~~~~~~~~~----~~i~~~i~~ 83 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA-DVKYLVFKPKIDTRSIRNIQSRTGTS-LPSVEVESA----PEILNYIMS 83 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCCGGGCSSCCCCCCCS-SCCEEESST----HHHHHHHHS
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEEeccCchHHHHHHHhcCCC-ccccccCCH----HHHHHHHHH
Confidence 468899999999999999877766655443 56676662111 00110001110000 001111111 112222222
Q ss_pred ----hCCCEEEEcCCCc--HHHHHHHHHHHHcCcEEEEEEcCcchh
Q 017797 199 ----HMPEVIIVDEIGT--EAEAHACRSIAERGVMLIGTAHGEWLE 238 (365)
Q Consensus 199 ----~~P~vlilDEp~~--~~d~~~i~~~~~~G~tVi~t~H~~~~~ 238 (365)
.+|++|++||... ..-.+.+..+++.|+.||++.|+.++.
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~ 129 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFK 129 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccccc
Confidence 3599999999964 233567777778899999999987744
No 143
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.42 E-value=3.9e-08 Score=93.71 Aligned_cols=53 Identities=11% Similarity=0.021 Sum_probs=36.1
Q ss_pred CCcchhHHHHHHHHHhhCCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcCcchhHH
Q 017797 183 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENI 240 (365)
Q Consensus 183 ~S~g~~~r~~la~al~~~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~~~~~~~ 240 (365)
+|+|++|+...+++++.+||++ ||| ..-.+.++.+ +.+.+|+.++|+...++.
T Consensus 142 ls~g~~Q~~~ad~ill~k~dl~--de~--~~l~~~l~~l-~~~~~ii~~sh~~~~~~~ 194 (318)
T 1nij_A 142 FTIAQSQVGYADRILLTKTDVA--GEA--EKLHERLARI-NARAPVYTVTHGDIDLGL 194 (318)
T ss_dssp CHHHHHHHHTCSEEEEECTTTC--SCT--HHHHHHHHHH-CSSSCEEECCSSCCCGGG
T ss_pred chHHHHHHHhCCEEEEECcccC--CHH--HHHHHHHHHh-CCCCeEEEecccCCCHHH
Confidence 4788888876666677777776 888 2223445554 368999999998654443
No 144
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.41 E-value=1.1e-07 Score=95.55 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=36.8
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ 151 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~ 151 (365)
.++++++.+++ ++++|+|||||||||||++|+|++.|+.|
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 38899999999 99999999999999999999999998743
No 145
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.40 E-value=2e-06 Score=80.18 Aligned_cols=72 Identities=22% Similarity=0.384 Sum_probs=50.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhC
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~ 200 (365)
++..++|.||||+||||+++++++... ..+..+....... ....+.+...+..+..+...+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~----~~~~~i~~~~l~~---------------~~~~~~~~~~~~~~~~~~~~~ 113 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS----ATFLNISAASLTS---------------KYVGDGEKLVRALFAVARHMQ 113 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT----CEEEEEESTTTSS---------------SSCSCHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC----CCeEEeeHHHHhh---------------cccchHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999763 3344443221110 011233455666778888889
Q ss_pred CCEEEEcCCCc
Q 017797 201 PEVIIVDEIGT 211 (365)
Q Consensus 201 P~vlilDEp~~ 211 (365)
|.+|++||+..
T Consensus 114 ~~vl~iDEid~ 124 (297)
T 3b9p_A 114 PSIIFIDEVDS 124 (297)
T ss_dssp SEEEEEETGGG
T ss_pred CcEEEeccHHH
Confidence 99999999955
No 146
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.39 E-value=5.8e-07 Score=89.69 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=39.1
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
++.+..-+++|++++|.|+||+|||||+..++....+..+..|.++.
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 66666668899999999999999999999999988764355777765
No 147
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.39 E-value=1.3e-07 Score=84.05 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=33.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~ 159 (365)
.++|++++|+||||||||||+++|+|++.+. +..+.++..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~~~g~v~~ 58 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GLPAEVVPM 58 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TCCEEEEES
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCceEEEec
Confidence 4578999999999999999999999999875 445555543
No 148
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.38 E-value=8.6e-08 Score=83.47 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=51.4
Q ss_pred hccCCCcchhHHHHHHHHHhhC----CCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 179 RMQVPEPSLQHKVMIEAVENHM----PEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 179 ~~~~~S~g~~~r~~la~al~~~----P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
+...+|+|++|++++|++++.. |+++++|||++++|.. .+..+. .+.++|+++|..... ..||+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~-~~~~~ivith~~~~~-~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS-KESQFIVITLRDVMM-ANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHH-TTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc-cCCEEEEEEecHHHH-HhCCEEE
Confidence 4567899999999999999754 6999999999999953 333333 356889999987644 5788876
No 149
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.37 E-value=2.1e-07 Score=82.20 Aligned_cols=57 Identities=23% Similarity=0.235 Sum_probs=40.0
Q ss_pred eEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
+++++++.... .+......++|++++|+|||||||||+++.|++.+. ..+....+++
T Consensus 4 ~~~~~~~~~~~--~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d 60 (200)
T 3uie_A 4 NIKWHECSVEK--VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILD 60 (200)
T ss_dssp ------CCCCH--HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CCcccccccCH--HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEec
Confidence 56666665554 677777788999999999999999999999999987 3244333444
No 150
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.36 E-value=4.7e-07 Score=84.37 Aligned_cols=125 Identities=18% Similarity=0.287 Sum_probs=70.6
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHH
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKV 191 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~ 191 (365)
++.+++.+++| ++|+||||||||||+++|++.+.+ ..+.+.... +. ....+.. ...-+.
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~-l~------~~~~~~~--------~~~i~~ 94 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPE-LL------NMYVGES--------ERAVRQ 94 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTT-TC------SSTTHHH--------HHHHHH
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHH-HH------hhhhhHH--------HHHHHH
Confidence 55566666666 999999999999999999998765 234443321 10 0000000 011122
Q ss_pred HHHHHHhhCCCEEEEcCCCcHH------H--------HHHHHHHH----HcCcEEEEEEcCcchhHHhhhHHHHHHHcC-
Q 017797 192 MIEAVENHMPEVIIVDEIGTEA------E--------AHACRSIA----ERGVMLIGTAHGEWLENIIKNPILSDLIGG- 252 (365)
Q Consensus 192 ~la~al~~~P~vlilDEp~~~~------d--------~~~i~~~~----~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~- 252 (365)
.+..+....|.++++||..... + -..+..+. +....++++++..+.. |+.+ +..
T Consensus 95 vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L----D~al---~r~g 167 (274)
T 2x8a_A 95 VFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII----DPAI---LRPG 167 (274)
T ss_dssp HHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS----CHHH---HSTT
T ss_pred HHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC----CHhh---cCcc
Confidence 3344456789999999995410 0 01222221 2245677788777644 4444 222
Q ss_pred --cEEEEecCHHHH
Q 017797 253 --VDTVTLGDEEAR 264 (365)
Q Consensus 253 --g~iv~~g~~~~~ 264 (365)
.+.+..+-|..-
T Consensus 168 Rfd~~i~~~~P~~~ 181 (274)
T 2x8a_A 168 RLDKTLFVGLPPPA 181 (274)
T ss_dssp SSCEEEECCSCCHH
T ss_pred cCCeEEEeCCcCHH
Confidence 246677766653
No 151
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.35 E-value=1.5e-06 Score=83.60 Aligned_cols=118 Identities=17% Similarity=0.227 Sum_probs=66.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhh-hhhcc--CC----CcchhHHHHHHHH
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQ--VP----EPSLQHKVMIEAV 196 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~-~~~~~--~~----S~g~~~r~~la~a 196 (365)
.++|.||+|+||||+++.+++.+.+..+..+++++...... +...+.. ....+ .. +...... .+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~l~~~ 119 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN-----FTAIIGEIARSLNIPFPRRGLSRDEFLA-LLVEH 119 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS-----HHHHHHHHHHHTTCCCCSSCCCHHHHHH-HHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC-----HHHHHHHHHHHhCccCCCCCCCHHHHHH-HHHHH
Confidence 89999999999999999999988664234566665322110 0000000 00011 00 1111111 12222
Q ss_pred H--hhCCCEEEEcCCCcH--HHHHHHHHHH----H---cCcEEEEEEcCcchhHHhhhHHHH
Q 017797 197 E--NHMPEVIIVDEIGTE--AEAHACRSIA----E---RGVMLIGTAHGEWLENIIKNPILS 247 (365)
Q Consensus 197 l--~~~P~vlilDEp~~~--~d~~~i~~~~----~---~G~tVi~t~H~~~~~~~~~d~i~~ 247 (365)
+ ...|.+|++||+... .....+..+. . .+..+|+++|..+....+..++..
T Consensus 120 l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~ 181 (389)
T 1fnn_A 120 LRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG 181 (389)
T ss_dssp HHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH
T ss_pred HhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh
Confidence 2 245889999999764 2233333332 2 478999999998766656655553
No 152
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.33 E-value=2.7e-07 Score=87.43 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=42.8
Q ss_pred eeeEEEEECCcccCcchhhhhcc-------------------cCCcEEEEEcCCCCcHHHHHHHHHhccc--cCCCCeEE
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLL-------------------HYGKSILFVGRPGVGKTTVMREIARVLS--DEFQKRVV 155 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l-------------------~~g~~v~iiGpnGsGKTTllr~l~gll~--~~~~~~i~ 155 (365)
++++++.|. .. +..+++.+ .+|++++|+||||||||||+++|+|++. |+ .+.+.
T Consensus 40 ~~~v~~~y~--~~--~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~-~G~i~ 114 (308)
T 1sq5_A 40 LEEVAEIYL--PL--SRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE-HRRVE 114 (308)
T ss_dssp HHHHHHTHH--HH--HHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT-CCCEE
T ss_pred hHhHHHHHH--HH--HHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC-CCeEE
Confidence 345666662 22 66777766 7789999999999999999999999987 66 45565
Q ss_pred EE
Q 017797 156 IV 157 (365)
Q Consensus 156 ~i 157 (365)
++
T Consensus 115 vi 116 (308)
T 1sq5_A 115 LI 116 (308)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 153
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.31 E-value=1.6e-07 Score=92.80 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=35.5
Q ss_pred EEEECCcccCcchhhhhcccCCcE--EEEEcCCCCcHHHHHHHHHhcc
Q 017797 101 TCRVGRAVSGHIDMVYDLLHYGKS--ILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 101 ~~r~~~~~~~~~~~l~~~l~~g~~--v~iiGpnGsGKTTllr~l~gll 146 (365)
+++|+.. . ++++++.+.+|++ ++|+||||||||||+++|+|+.
T Consensus 22 ~~~y~~~-~--L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 22 HVGFDSL-P--DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CC-CC---C--HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCe-e--cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 5666543 2 8999999999999 9999999999999999999985
No 154
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.31 E-value=1.8e-07 Score=86.23 Aligned_cols=49 Identities=29% Similarity=0.328 Sum_probs=35.9
Q ss_pred eeeE-EEEE-CCcccCcchhhhhcccC---CcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 97 IVGL-TCRV-GRAVSGHIDMVYDLLHY---GKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 97 i~~l-~~r~-~~~~~~~~~~l~~~l~~---g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
++++ +++| +...+ ++++++.+.+ |+.++|+|++||||||+.+.|++.+.
T Consensus 20 ~~~~~~~~~~~~~~~--l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 20 TGSLLHSPFDEEQQI--LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ------------CHH--HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EcceeeEEecCcchh--hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5688 9999 55555 9999999999 99999999999999999999999764
No 155
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.31 E-value=3.6e-07 Score=97.11 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=75.2
Q ss_pred hhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCC--CCeEEEEcCCCcccCC--------CCCc-hhhhh------
Q 017797 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--QKRVVIVDTSNEIGGD--------GDIP-HSAIG------ 175 (365)
Q Consensus 113 ~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~--~~~i~~i~~~~ei~~~--------~~~~-~~~~~------ 175 (365)
..+...+..|+.++|+|||||||||++..++....... +..++++....++... .+.. ...++
T Consensus 100 ~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~ 179 (773)
T 2xau_A 100 DEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFE 179 (773)
T ss_dssp HHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTE
T ss_pred HHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccc
Confidence 33445567789999999999999999998876543322 4446555433222100 0000 00000
Q ss_pred ----hhhhccCCCcchhHHHHHHHHHhhCCCEEEEcCCCc-HHHHH----HHHHHHH---cCcEEEEE-EcCcc
Q 017797 176 ----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT-EAEAH----ACRSIAE---RGVMLIGT-AHGEW 236 (365)
Q Consensus 176 ----~~~~~~~~S~g~~~r~~la~al~~~P~vlilDEp~~-~~d~~----~i~~~~~---~G~tVi~t-~H~~~ 236 (365)
...++.+.++|+.++..++..+..++++||+||+.. .+|.+ .+..+.. ...+|++| ||+.+
T Consensus 180 ~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~ 253 (773)
T 2xau_A 180 NKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE 253 (773)
T ss_dssp EECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH
T ss_pred cccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 012344567899999888888899999999999985 66632 3333322 33455554 67654
No 156
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.29 E-value=1.1e-06 Score=83.91 Aligned_cols=96 Identities=16% Similarity=0.202 Sum_probs=60.2
Q ss_pred hhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCch-hhhhh---hhhccCC-----
Q 017797 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPH-SAIGT---ARRMQVP----- 183 (365)
Q Consensus 113 ~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~-~~~~~---~~~~~~~----- 183 (365)
.++++...++++++|+||||+||||++..|++.+.+. +++|.+++....-.. ...+ ..+.. ...+.+.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid~D~~r~~--a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAAADTFRAG--ATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCSCHH--HHHHHHHHHTTTSCTTEEEECCSST
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCcchh--HHHHHHHHHhccccCCceEEeCCCC
Confidence 4566677889999999999999999999999999876 678888765321000 0000 00000 0011111
Q ss_pred --CcchhHHHHHHHHHhhCCCEEEEcCCCc
Q 017797 184 --EPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 184 --S~g~~~r~~la~al~~~P~vlilDEp~~ 211 (365)
.......-.+..++..+.|++|+|=|..
T Consensus 173 ~~~p~~~~~~~l~~~~~~~yD~VIIDTpg~ 202 (320)
T 1zu4_A 173 NADPASVVFDAIKKAKEQNYDLLLIDTAGR 202 (320)
T ss_dssp TCCHHHHHHHHHHHHHHTTCSEEEEECCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 1112223345566778999999999976
No 157
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.28 E-value=3.3e-07 Score=80.01 Aligned_cols=28 Identities=25% Similarity=0.567 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccC
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDE 149 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~ 149 (365)
|++++|+||||||||||+++|++++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 5689999999999999999999999754
No 158
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.28 E-value=3.8e-07 Score=88.24 Aligned_cols=37 Identities=19% Similarity=0.403 Sum_probs=31.9
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc-cC
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-DE 149 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~-~~ 149 (365)
++.|++. .+|++++|+||||||||||+++|+|+.. +.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~ 243 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL 243 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc
Confidence 5666664 4799999999999999999999999987 65
No 159
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.27 E-value=1.1e-06 Score=87.24 Aligned_cols=125 Identities=12% Similarity=0.207 Sum_probs=71.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCC-CCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCC
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLSDEF-QKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~~~~-~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
..++|.||||+|||||+++|++.+.... +..+.+++... + ....... .. .+. ...+...+..+|
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~-~------~~~~~~~---~~---~~~--~~~~~~~~~~~~ 195 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK-F------LNDLVDS---MK---EGK--LNEFREKYRKKV 195 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH-H------HHHHHHH---HH---TTC--HHHHHHHHTTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH-H------HHHHHHH---HH---ccc--HHHHHHHhcCCC
Confidence 5799999999999999999999884331 34555554211 1 0000100 00 000 112333333489
Q ss_pred CEEEEcCCCcHH----H----HHHHHHHHHcCcEEEEEEcCc-chhHHhhhHHHHHHHcCcEEEEecCHHH
Q 017797 202 EVIIVDEIGTEA----E----AHACRSIAERGVMLIGTAHGE-WLENIIKNPILSDLIGGVDTVTLGDEEA 263 (365)
Q Consensus 202 ~vlilDEp~~~~----d----~~~i~~~~~~G~tVi~t~H~~-~~~~~~~d~i~~~ll~~g~iv~~g~~~~ 263 (365)
++|++||+.... . ...+..+.+.|..+|+++|.. .....+.+++... +..|.++....++.
T Consensus 196 ~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR-~~~g~~i~l~~p~~ 265 (440)
T 2z4s_A 196 DILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSR-FQMGLVAKLEPPDE 265 (440)
T ss_dssp SEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHH-HHSSBCCBCCCCCH
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhh-ccCCeEEEeCCCCH
Confidence 999999995422 1 234445567789999999874 3222345555532 34456665555543
No 160
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.24 E-value=3.5e-07 Score=80.92 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
++|+.++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4688999999999999999999999875
No 161
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.24 E-value=5e-07 Score=78.60 Aligned_cols=27 Identities=33% Similarity=0.591 Sum_probs=25.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhc
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gl 145 (365)
+++|++++|+|||||||||++++|++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 678999999999999999999999998
No 162
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.22 E-value=7e-07 Score=88.46 Aligned_cols=87 Identities=23% Similarity=0.264 Sum_probs=52.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccC-----CC---cchhHHHH
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-----PE---PSLQHKVM 192 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~-----~S---~g~~~r~~ 192 (365)
++.+++++|||||||||++..|+..+.+. +++|.+++....-.. .+.+... ...+.++ .+ .-.-.+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G~kVllv~~D~~r~~--a~eqL~~-~~~~~gv~~~~~~~~~dp~~i~~~a 171 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR-GYKVGLVAADVYRPA--AYDQLLQ-LGNQIGVQVYGEPNNQNPIEIAKKG 171 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCSCHH--HHHHHHH-HHHTTTCCEECCTTCSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecCccchh--HHHHHHH-HHHhcCCceeeccccCCHHHHHHHH
Confidence 36799999999999999999999999875 778877754321000 0000000 0011111 11 11112234
Q ss_pred HHHHHhhCCCEEEEcCCCc
Q 017797 193 IEAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 193 la~al~~~P~vlilDEp~~ 211 (365)
++.+...++|++|+|+|+.
T Consensus 172 l~~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 172 VDIFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HHHTTTTTCSEEEEEECCC
T ss_pred HHHHHhcCCCEEEEECCCC
Confidence 5566667999999999974
No 163
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.21 E-value=7.9e-07 Score=85.18 Aligned_cols=132 Identities=18% Similarity=0.266 Sum_probs=68.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCC--CCeEEEEcCCCcccCCCCCchhhhhh-hhhcc--CCCcc---hhHHHHH
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEF--QKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQ--VPEPS---LQHKVMI 193 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~--~~~i~~i~~~~ei~~~~~~~~~~~~~-~~~~~--~~S~g---~~~r~~l 193 (365)
+..++|.||+|+|||||++.+++.+.+.. +..+++++...... +...... ...+. ....+ ....-.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 119 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT-----PYRVLADLLESLDVKVPFTGLSIAELYRRL 119 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS-----HHHHHHHHTTTTSCCCCSSSCCHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC-----HHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 57899999999999999999999886542 24555554211000 0000000 00000 00011 1111122
Q ss_pred HHHHhh--CCCEEEEcCCCcHHH------HHHHHHHH----HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecC
Q 017797 194 EAVENH--MPEVIIVDEIGTEAE------AHACRSIA----ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (365)
Q Consensus 194 a~al~~--~P~vlilDEp~~~~d------~~~i~~~~----~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~ 260 (365)
..++.. .|.+|++||+....+ ...+.... ..++++|+++|..+....+..++...+ . ++.+....
T Consensus 120 ~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~-~-~~~i~l~~ 196 (386)
T 2qby_A 120 VKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSL-S-EEEIIFPP 196 (386)
T ss_dssp HHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTT-T-TEEEEECC
T ss_pred HHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccC-C-CeeEEeCC
Confidence 233332 389999999977542 22233333 236789999998876555555554322 1 24555543
No 164
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.21 E-value=5.1e-06 Score=76.84 Aligned_cols=73 Identities=29% Similarity=0.419 Sum_probs=46.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhh
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
..+..++|.||+|+||||++++++..+. ..+..+....-.. ...+ ......+..+..+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~----~~~~~v~~~~~~~-------~~~~--------~~~~~~~~~~~~~~~~ 109 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN----ATFIRVVGSELVK-------KFIG--------EGASLVKDIFKLAKEK 109 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT----CEEEEEEGGGGCC-------CSTT--------HHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC----CCEEEEehHHHHH-------hccc--------hHHHHHHHHHHHHHHc
Confidence 4567899999999999999999998763 3444443211110 0000 0112233456667778
Q ss_pred CCCEEEEcCCCc
Q 017797 200 MPEVIIVDEIGT 211 (365)
Q Consensus 200 ~P~vlilDEp~~ 211 (365)
.|.+|++||+..
T Consensus 110 ~~~vl~iDEid~ 121 (285)
T 3h4m_A 110 APSIIFIDEIDA 121 (285)
T ss_dssp CSEEEEEETTHH
T ss_pred CCeEEEEECHHH
Confidence 999999999954
No 165
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.20 E-value=1e-05 Score=77.64 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=34.6
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhcc--ccC---CCCeEEEEcCCC
Q 017797 118 LLHYGKSILFVGRPGVGKTTVMREIARVL--SDE---FQKRVVIVDTSN 161 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTllr~l~gll--~~~---~~~~i~~i~~~~ 161 (365)
-+++|+++.|.||||||||||+..++... ++. .+.++.|++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 46789999999999999999999998853 221 256888887644
No 166
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.20 E-value=3.9e-07 Score=80.17 Aligned_cols=35 Identities=34% Similarity=0.462 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
..++|.||+|+||||++++++..+... +..+.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~-~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR-NVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 689999999999999999999988654 45555543
No 167
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.20 E-value=4.4e-06 Score=78.57 Aligned_cols=101 Identities=21% Similarity=0.366 Sum_probs=62.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHh
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~ 198 (365)
+.++..++|.||||+||||++++|++... ...+.++.. ++ ..... + ......+..+..+..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~----~~~i~v~~~-~l------~~~~~------g--~~~~~~~~~f~~a~~ 106 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKGP-EL------LTMWF------G--ESEANVREIFDKARQ 106 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT----CEEEEECHH-HH------HHHHH------T--TCTTHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC----CCEEEEEhH-HH------Hhhhc------C--chHHHHHHHHHHHHh
Confidence 45678999999999999999999999764 334433311 11 00001 1 112233445667777
Q ss_pred hCCCEEEEcCCCcHHH-----------------HHHHHHHH----HcCcEEEEEEcCcchh
Q 017797 199 HMPEVIIVDEIGTEAE-----------------AHACRSIA----ERGVMLIGTAHGEWLE 238 (365)
Q Consensus 199 ~~P~vlilDEp~~~~d-----------------~~~i~~~~----~~G~tVi~t~H~~~~~ 238 (365)
..|.+|++||+..-.. ..++..+- ..++.||++|+..+..
T Consensus 107 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 107 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 8899999999965211 12233331 2357889999887543
No 168
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.19 E-value=2.2e-06 Score=77.48 Aligned_cols=110 Identities=17% Similarity=0.245 Sum_probs=63.7
Q ss_pred CCcE-EEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc----ccC-CCCCchhhhhhhhhccCCCcchhHHHHHH
Q 017797 121 YGKS-ILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE----IGG-DGDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (365)
Q Consensus 121 ~g~~-v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~e----i~~-~~~~~~~~~~~~~~~~~~S~g~~~r~~la 194 (365)
+|++ +.+.|++|+||||++-.++..+... |.++.+++-... ... ..+.+..... .....+.......+.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~v~d~D~q~~~~~~al~~gl~~~~~~----~~~~~~~~~~e~~l~ 78 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVMAGVVETHGRAETEALLNGLPQQPLL----RTEYRGMTLEEMDLD 78 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCTTCHHHHHHHTTSCBCCCE----EEEETTEEEEECCHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC-CCCEEEEEeCCCCChhHHHHhcCccccCcc----eeecCCcccccccHH
Confidence 4554 8899999999999977777766544 566655543221 000 0011110000 000111111212344
Q ss_pred HHHhhCCCEEEEcCCCcH--------HHHHHHHHHHHcCcEEEEEEcCc
Q 017797 195 AVENHMPEVIIVDEIGTE--------AEAHACRSIAERGVMLIGTAHGE 235 (365)
Q Consensus 195 ~al~~~P~vlilDEp~~~--------~d~~~i~~~~~~G~tVi~t~H~~ 235 (365)
.++..+|+++|+||+... .-++.+....+.|..|++|+|-.
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlq 127 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQ 127 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGG
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcccc
Confidence 555679999999999742 12455566778899999999855
No 169
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.16 E-value=5e-07 Score=89.42 Aligned_cols=66 Identities=8% Similarity=0.064 Sum_probs=52.0
Q ss_pred ccCCCcchhHHHHHHHHHh----hCCCEEEEcCCCcHHHHH-------HHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 180 MQVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 180 ~~~~S~g~~~r~~la~al~----~~P~vlilDEp~~~~d~~-------~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
...+|+||++++++|++++ .+|+++++|||++++|.. .+..+...|.++|++||+.... ..||+++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 4568999999999999999 479999999999999953 2333333478999999997544 4577766
No 170
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.16 E-value=1.3e-05 Score=73.10 Aligned_cols=68 Identities=28% Similarity=0.418 Sum_probs=43.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCC
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 202 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~ 202 (365)
..++|+||||+||||++++|++.... .+++++... + ..... .....+.+..+..+....|.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~----~~~~i~~~~-~------~~~~~--------~~~~~~~~~~~~~a~~~~~~ 106 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKV----PFFTISGSD-F------VEMFV--------GVGASRVRDMFEQAKKAAPC 106 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC----CEEEECSCS-S------TTSCC--------CCCHHHHHHHHHHHHTTCSE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCC----CEEEEeHHH-H------HHHhh--------hhhHHHHHHHHHHHHHcCCe
Confidence 35899999999999999999998742 344444321 1 10000 01112233445556667899
Q ss_pred EEEEcCC
Q 017797 203 VIIVDEI 209 (365)
Q Consensus 203 vlilDEp 209 (365)
++++||.
T Consensus 107 il~iDei 113 (257)
T 1lv7_A 107 IIFIDEI 113 (257)
T ss_dssp EEEETTH
T ss_pred eehhhhh
Confidence 9999998
No 171
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.15 E-value=1.1e-05 Score=76.78 Aligned_cols=121 Identities=14% Similarity=0.076 Sum_probs=65.5
Q ss_pred hcccCCcEEEEEcCCCCcHHHHHHHHHhccccC-----CCCeEEEEcCCCcccC--------CCCCchhhh-hhhhhccC
Q 017797 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-----FQKRVVIVDTSNEIGG--------DGDIPHSAI-GTARRMQV 182 (365)
Q Consensus 117 ~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~-----~~~~i~~i~~~~ei~~--------~~~~~~~~~-~~~~~~~~ 182 (365)
.-+++|+++.|.|||||||||++..++...... .+.++.|++....+.. ..++....+ ........
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~ 181 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRA 181 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeC
Confidence 347889999999999999999999998754211 1467888865432200 000110000 00000011
Q ss_pred CCcchh-HHHHHHHHHh---hCCCEEEEcCCCcHHHH----------------HH---HHHH-HHcCcEEEEEEcCcch
Q 017797 183 PEPSLQ-HKVMIEAVEN---HMPEVIIVDEIGTEAEA----------------HA---CRSI-AERGVMLIGTAHGEWL 237 (365)
Q Consensus 183 ~S~g~~-~r~~la~al~---~~P~vlilDEp~~~~d~----------------~~---i~~~-~~~G~tVi~t~H~~~~ 237 (365)
.+..+. +.+..+..+. .+|++||+|+++.-... +. +..+ .+.|++||++.|....
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~ 260 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMAR 260 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC---
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeec
Confidence 111111 1222233333 68999999999874211 11 2222 3569999999997653
No 172
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.14 E-value=1.2e-06 Score=77.01 Aligned_cols=32 Identities=34% Similarity=0.334 Sum_probs=27.5
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhccccC
Q 017797 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDE 149 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~ 149 (365)
.+.+|++++|+|||||||||+++.|++++.|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 35789999999999999999999999998553
No 173
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.14 E-value=7e-06 Score=78.76 Aligned_cols=117 Identities=12% Similarity=0.095 Sum_probs=78.7
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC--c-ccC-----CCCCchhhhhhhhhccCC
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN--E-IGG-----DGDIPHSAIGTARRMQVP 183 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~--e-i~~-----~~~~~~~~~~~~~~~~~~ 183 (365)
++.+..-+.+|++++|.|+||+|||||+..++...... +..|.|+.-.. + +.. ...++...+ +.+.+
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l----~~g~L 110 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND-DRGVAVFSLEMSAEQLALRALSDLTSINMHDL----ESGRL 110 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCEEEEEESSSCHHHHHHHHHHHHHCCCHHHH----HHTCC
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHH----hcCCC
Confidence 55555558899999999999999999999998877653 66777764321 1 100 011111111 22457
Q ss_pred CcchhHHHHHHHHHhhCCCEEEEcCCCcHHH-H-HHHHHHHH-c-CcEEEEEEc
Q 017797 184 EPSLQHKVMIEAVENHMPEVIIVDEIGTEAE-A-HACRSIAE-R-GVMLIGTAH 233 (365)
Q Consensus 184 S~g~~~r~~la~al~~~P~vlilDEp~~~~d-~-~~i~~~~~-~-G~tVi~t~H 233 (365)
+.++.+++..+...+.++++.|.|+|....+ + ..++.+.. . |..+|++=|
T Consensus 111 s~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 111 DDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp CHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 8889999999988888999999999965433 3 34555543 4 677777654
No 174
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.13 E-value=2.3e-06 Score=80.06 Aligned_cols=35 Identities=37% Similarity=0.661 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
..++|.||||+||||++++|++.+... +..+.+++
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~-~~~~~~~~ 82 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRID 82 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSC-GGGEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCC-CcceEEee
Confidence 589999999999999999999998654 34455554
No 175
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.13 E-value=4.7e-06 Score=74.31 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=55.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhC
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~ 200 (365)
.+..++|.||+|+||||+++.++..+... +..+.+++....... +. . .. ....+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~~~~~~~~---~~----~---~~---------------~~~~~ 104 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIPLGIHASI---ST----A---LL---------------EGLEQ 104 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEGGGGGGS---CG----G---GG---------------TTGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHHHHHH---HH----H---HH---------------HhccC
Confidence 46799999999999999999999988654 455665543211100 00 0 00 01257
Q ss_pred CCEEEEcCCCcHH--H--H----HHHHHHHHcCcE-EEEEEcCc
Q 017797 201 PEVIIVDEIGTEA--E--A----HACRSIAERGVM-LIGTAHGE 235 (365)
Q Consensus 201 P~vlilDEp~~~~--d--~----~~i~~~~~~G~t-Vi~t~H~~ 235 (365)
|.+|++||+.... . . ..+....+.+.. +|++++..
T Consensus 105 ~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 105 FDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp SSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 8999999985421 1 2 334444566654 77777643
No 176
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.12 E-value=1.3e-06 Score=75.86 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
+|++++|+||||||||||++.|++..++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 5889999999999999999999998753
No 177
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.12 E-value=1.3e-06 Score=79.69 Aligned_cols=34 Identities=35% Similarity=0.545 Sum_probs=29.0
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
++++++.+++| ++|+||||||||||+++|++.+.
T Consensus 41 ~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 41 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 55666666666 99999999999999999999875
No 178
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.12 E-value=7.8e-07 Score=86.40 Aligned_cols=68 Identities=16% Similarity=0.012 Sum_probs=51.1
Q ss_pred cCCCcchhHHHH------HHHHHhhC-CCEEEEcCCCcHHHHHH---HH-HHHH--cCcEEEEEEcCcchhHHhhhHHHH
Q 017797 181 QVPEPSLQHKVM------IEAVENHM-PEVIIVDEIGTEAEAHA---CR-SIAE--RGVMLIGTAHGEWLENIIKNPILS 247 (365)
Q Consensus 181 ~~~S~g~~~r~~------la~al~~~-P~vlilDEp~~~~d~~~---i~-~~~~--~G~tVi~t~H~~~~~~~~~d~i~~ 247 (365)
..+|+|++++++ +++++..+ |++||+|||++++|... +. .+.+ .+.+||+|||+.. ...+||+++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~~~- 356 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADVII- 356 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSEEE-
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCEEE-
Confidence 458999999884 56778889 99999999999999642 22 2222 3468999999987 456788877
Q ss_pred HHHc
Q 017797 248 DLIG 251 (365)
Q Consensus 248 ~ll~ 251 (365)
+++
T Consensus 357 -~l~ 359 (371)
T 3auy_A 357 -NVK 359 (371)
T ss_dssp -EEE
T ss_pred -EEE
Confidence 553
No 179
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.10 E-value=2e-06 Score=74.21 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=30.7
Q ss_pred hhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC
Q 017797 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE 149 (365)
Q Consensus 113 ~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~ 149 (365)
+.+++.+.+| +++|+|||||||||++++|.+++.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 5566667777 99999999999999999999988654
No 180
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.09 E-value=2.3e-06 Score=80.98 Aligned_cols=120 Identities=12% Similarity=0.164 Sum_probs=64.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCC
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
+..++|.||+|+||||++++++..+... +..+.+++... + .......... +.. ..+.. ...+|
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~~~-~------~~~~~~~~~~------~~~--~~~~~-~~~~~ 99 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSADD-F------AQAMVEHLKK------GTI--NEFRN-MYKSV 99 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHHH-H------HHHHHHHHHH------TCH--HHHHH-HHHTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEHHH-H------HHHHHHHHHc------CcH--HHHHH-HhcCC
Confidence 3589999999999999999999988654 45666654211 0 0000100000 000 01111 13469
Q ss_pred CEEEEcCCCcH----HHH----HHHHHHHHcCcEEEEEEcCc-chhHHhhhHHHHHHHcCcEEEEec
Q 017797 202 EVIIVDEIGTE----AEA----HACRSIAERGVMLIGTAHGE-WLENIIKNPILSDLIGGVDTVTLG 259 (365)
Q Consensus 202 ~vlilDEp~~~----~d~----~~i~~~~~~G~tVi~t~H~~-~~~~~~~d~i~~~ll~~g~iv~~g 259 (365)
++|++||+..- ... ..+..+.+.|..+|++++.. .....+..++.. -+..|.++...
T Consensus 100 ~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s-R~~~~~~i~l~ 165 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS-RFEGGILVEIE 165 (324)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH-HHHTSEEEECC
T ss_pred CEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh-cccCceEEEeC
Confidence 99999999542 112 23444556777777776543 222233444443 23344555443
No 181
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.09 E-value=5.9e-06 Score=79.88 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=64.8
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCC----CCCchhhhhhhhhccCCCcchhHHHHH
Q 017797 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----GDIPHSAIGTARRMQVPEPSLQHKVMI 193 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~----~~~~~~~~~~~~~~~~~S~g~~~r~~l 193 (365)
-+++|.++.|.||||+|||||+..++...... +..+.|++....+... .++....+. +...+... +...+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid~E~s~~~~~a~~~g~~~~~l~----i~~~~~~e-~~~~~ 132 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIYARKLGVDIDNLL----CSQPDTGE-QALEI 132 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHHHHHTTCCGGGCE----EECCSSHH-HHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCCccHHHHHHcCCChhhee----eeCCCCHH-HHHHH
Confidence 36789999999999999999999888766543 5678888763322100 000000000 00011122 22233
Q ss_pred HHHH--hhCCCEEEEcCCCcH---H-------H----------HHHHHHH----HHcCcEEEEEEcCcch
Q 017797 194 EAVE--NHMPEVIIVDEIGTE---A-------E----------AHACRSI----AERGVMLIGTAHGEWL 237 (365)
Q Consensus 194 a~al--~~~P~vlilDEp~~~---~-------d----------~~~i~~~----~~~G~tVi~t~H~~~~ 237 (365)
...+ ..+|++||+|.++.- . | .+.++.+ .+.|++||++.|-...
T Consensus 133 ~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~ 202 (356)
T 1u94_A 133 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 202 (356)
T ss_dssp HHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----
T ss_pred HHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Confidence 3333 468999999999652 1 1 1123333 4679999999997653
No 182
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.08 E-value=8e-06 Score=71.45 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=56.0
Q ss_pred CCcEEEEEcCCCCcHHHHH-HHHHhccccCCCCeEEEEcCC--CcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHH
Q 017797 121 YGKSILFVGRPGVGKTTVM-REIARVLSDEFQKRVVIVDTS--NEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 197 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTll-r~l~gll~~~~~~~i~~i~~~--~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al 197 (365)
+|.+++++||+||||||++ +.+..+... +.++.++... ..+.......+..... ......+... .+. .+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~--g~~v~~~~~~~d~r~~~~~i~s~~g~~~-~~~~~~~~~~----~~~-~~ 73 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLG--KKKVAVFKPKIDSRYHSTMIVSHSGNGV-EAHVIERPEE----MRK-YI 73 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT--TCEEEEEEEC-----CCCEECC----CE-ECEEESSGGG----GGG-GC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeeccccccCcccEEecCCCce-eeEEECCHHH----HHH-Hh
Confidence 4789999999999999997 444444332 4555554211 0110000000000000 0000000000 000 00
Q ss_pred hhCCCEEEEcCCCcH--HHHHHHHHHHHcCcEEEEEEcCcc
Q 017797 198 NHMPEVIIVDEIGTE--AEAHACRSIAERGVMLIGTAHGEW 236 (365)
Q Consensus 198 ~~~P~vlilDEp~~~--~d~~~i~~~~~~G~tVi~t~H~~~ 236 (365)
..++++|++||.-.- .-.+.+..+++.|..|+++.++.+
T Consensus 74 ~~~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 74 EEDTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp CTTEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBC
T ss_pred cCCCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeeccc
Confidence 136899999998542 234567777788999999998766
No 183
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.08 E-value=2.2e-06 Score=79.56 Aligned_cols=34 Identities=35% Similarity=0.545 Sum_probs=28.9
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
++.+++.+++| ++|+||||||||||+++|++.+.
T Consensus 65 l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 65 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 55566666666 99999999999999999999875
No 184
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.04 E-value=4.3e-06 Score=84.44 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=26.6
Q ss_pred hhhhcccCCcEEEEEcCCCCcHHHHHHHHHh
Q 017797 114 MVYDLLHYGKSILFVGRPGVGKTTVMREIAR 144 (365)
Q Consensus 114 ~l~~~l~~g~~v~iiGpnGsGKTTllr~l~g 144 (365)
.+...+.++..++|.|+|||||||+++.|+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 3455567788999999999999999999886
No 185
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.03 E-value=2.2e-06 Score=75.53 Aligned_cols=37 Identities=30% Similarity=0.341 Sum_probs=25.6
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
..+++++.+.+|.+++|+||+||||||+.+.|++.+.
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4788999999999999999999999999999998773
No 186
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.03 E-value=2.1e-05 Score=71.50 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=44.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhC
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~ 200 (365)
....++|.||+|+||||++++++..+. ..+.++....-... +.. ......+..+..+....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~~~~~~~~~~---~~~------------~~~~~~~~~~~~a~~~~ 98 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ----VPFLAMAGAEFVEV---IGG------------LGAARVRSLFKEARARA 98 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT----CCEEEEETTTTSSS---STT------------HHHHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEechHHHHhh---ccC------------hhHHHHHHHHHHHHhcC
Confidence 345789999999999999999998763 23444433211100 000 01122334556666678
Q ss_pred CCEEEEcCCCc
Q 017797 201 PEVIIVDEIGT 211 (365)
Q Consensus 201 P~vlilDEp~~ 211 (365)
|.+|++||+-.
T Consensus 99 ~~vl~iDeid~ 109 (262)
T 2qz4_A 99 PCIVYIDEIDA 109 (262)
T ss_dssp SEEEEEECC--
T ss_pred CeEEEEeCcch
Confidence 99999999965
No 187
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=1.7e-05 Score=77.66 Aligned_cols=119 Identities=19% Similarity=0.318 Sum_probs=72.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhh
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
.+...+++.||||+|||++.+++++.... .+..+..+.-+. ..++ .....-+..+..|..+
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~----~f~~v~~s~l~s-------k~vG--------ese~~vr~lF~~Ar~~ 240 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDC----KFIRVSGAELVQ-------KYIG--------EGSRMVRELFVMAREH 240 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTC----EEEEEEGGGGSC-------SSTT--------HHHHHHHHHHHHHHHT
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCC----CceEEEhHHhhc-------cccc--------hHHHHHHHHHHHHHHh
Confidence 34457999999999999999999997643 445444322110 0111 1112334567788889
Q ss_pred CCCEEEEcCCCcH----------HH--H-----HHHHHHH----HcCcEEEEEEcCcchhHHhhhHHHHHHHcCc---EE
Q 017797 200 MPEVIIVDEIGTE----------AE--A-----HACRSIA----ERGVMLIGTAHGEWLENIIKNPILSDLIGGV---DT 255 (365)
Q Consensus 200 ~P~vlilDEp~~~----------~d--~-----~~i~~~~----~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g---~i 255 (365)
.|.+|++||+-+- .+ . ..+..+- ..++.||++|...+.. |+.+ +.-| +.
T Consensus 241 aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~L----DpAl---lRpGRfD~~ 313 (405)
T 4b4t_J 241 APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDIL----DPAL---LRPGRIDRK 313 (405)
T ss_dssp CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSS----CHHH---HSTTSSCCE
T ss_pred CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhC----CHhH---cCCCcCceE
Confidence 9999999998541 11 1 1222221 2367889999877644 3333 4434 36
Q ss_pred EEecCHHHH
Q 017797 256 VTLGDEEAR 264 (365)
Q Consensus 256 v~~g~~~~~ 264 (365)
+..+-|+.-
T Consensus 314 I~i~lPd~~ 322 (405)
T 4b4t_J 314 IEFPPPSVA 322 (405)
T ss_dssp EECCCCCHH
T ss_pred EEcCCcCHH
Confidence 777777654
No 188
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.02 E-value=2.4e-06 Score=75.32 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=24.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
..+|++++|+|||||||||+++.|++.+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578999999999999999999999987
No 189
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.02 E-value=2.9e-06 Score=75.37 Aligned_cols=29 Identities=31% Similarity=0.412 Sum_probs=27.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
++|++++|+|||||||||+++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999865
No 190
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=2.4e-05 Score=77.54 Aligned_cols=119 Identities=20% Similarity=0.283 Sum_probs=72.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhh
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
.+...+++.||||+|||++.++|++.... .+..+..+.-+. ...+ .....-+..+..|..+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~----~~~~v~~s~l~s-------k~~G--------ese~~ir~~F~~A~~~ 273 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGA----NFIFSPASGIVD-------KYIG--------ESARIIREMFAYAKEH 273 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTC----EEEEEEGGGTCC-------SSSS--------HHHHHHHHHHHHHHHS
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCC----CEEEEehhhhcc-------ccch--------HHHHHHHHHHHHHHhc
Confidence 34468999999999999999999998643 445444321110 0011 1122345567788889
Q ss_pred CCCEEEEcCCCcH----------HH--H-----HHHHHHH----HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcE---E
Q 017797 200 MPEVIIVDEIGTE----------AE--A-----HACRSIA----ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD---T 255 (365)
Q Consensus 200 ~P~vlilDEp~~~----------~d--~-----~~i~~~~----~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~---i 255 (365)
.|.||++||.-+- .+ . .++..+- ..++.||++|...+..+ +. ++..|+ .
T Consensus 274 ~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LD----pA---llRpGRfD~~ 346 (437)
T 4b4t_L 274 EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLD----PA---LLRPGRLDRK 346 (437)
T ss_dssp CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSC----TT---TTSTTSEEEE
T ss_pred CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhC----HH---HhCCCcccee
Confidence 9999999999541 01 1 1222321 23578999998776432 32 445554 5
Q ss_pred EEecCHHHH
Q 017797 256 VTLGDEEAR 264 (365)
Q Consensus 256 v~~g~~~~~ 264 (365)
+..+-|+.-
T Consensus 347 I~i~lPd~~ 355 (437)
T 4b4t_L 347 VEIPLPNEA 355 (437)
T ss_dssp ECCCCCCHH
T ss_pred eecCCcCHH
Confidence 666776653
No 191
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.00 E-value=9.6e-06 Score=86.50 Aligned_cols=100 Identities=22% Similarity=0.379 Sum_probs=60.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHh
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~ 198 (365)
+.+++.++|+|||||||||++++|++.+.. ..+.++.. ++.. .+. .....+.+..+..+..
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~----~~i~v~~~-~l~~--~~~------------g~~~~~l~~vf~~a~~ 295 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGP-EIMS--KLA------------GESESNLRKAFEEAEK 295 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTC----EEEEEEHH-HHSS--SST------------THHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCC----cEEEEEch-Hhhh--hhh------------hhHHHHHHHHHHHHHh
Confidence 466889999999999999999999998743 33333321 1100 000 0011233445666777
Q ss_pred hCCCEEEEcCCCc----------HHHH---HHHHHHH-----HcCcEEEEEEcCcch
Q 017797 199 HMPEVIIVDEIGT----------EAEA---HACRSIA-----ERGVMLIGTAHGEWL 237 (365)
Q Consensus 199 ~~P~vlilDEp~~----------~~d~---~~i~~~~-----~~G~tVi~t~H~~~~ 237 (365)
..|.++++||+.. ..+. ..+..+. ..++.+++++|..+.
T Consensus 296 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ 352 (806)
T 1ypw_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTT
T ss_pred cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchh
Confidence 8999999999932 2222 2222222 235788888887643
No 192
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.99 E-value=4.7e-05 Score=72.33 Aligned_cols=73 Identities=22% Similarity=0.393 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhC
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~ 200 (365)
+...++|.||+|+||||++++++.... +..+..+....-... .. .......+..+..+....
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~---~~~~~~i~~~~l~~~-------~~--------g~~~~~~~~lf~~a~~~~ 105 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSISSSDLVSK-------WL--------GESEKLVKNLFQLARENK 105 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT---SCEEEEEECCSSCCS-------SC--------CSCHHHHHHHHHHHHHTS
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcC---CCcEEEEEhHHHHhh-------hh--------hHHHHHHHHHHHHHHhcC
Confidence 446899999999999999999999762 234555543221110 00 011122334555666789
Q ss_pred CCEEEEcCCCc
Q 017797 201 PEVIIVDEIGT 211 (365)
Q Consensus 201 P~vlilDEp~~ 211 (365)
|.+|++||+-.
T Consensus 106 ~~vl~iDEid~ 116 (322)
T 1xwi_A 106 PSIIFIDEIDS 116 (322)
T ss_dssp SEEEEEETTTG
T ss_pred CcEEEeecHHH
Confidence 99999999965
No 193
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.98 E-value=3.5e-05 Score=73.12 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=63.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHH-HhccccCCCCeEEEEcCCCcccCC----CCCchhhhhhhhhccCCCcchhHHHHH
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREI-ARVLSDEFQKRVVIVDTSNEIGGD----GDIPHSAIGTARRMQVPEPSLQHKVMI 193 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l-~gll~~~~~~~i~~i~~~~ei~~~----~~~~~~~~~~~~~~~~~S~g~~~r~~l 193 (365)
+++| ++.|.||+|+|||||+-.+ +.......+..+.|++....+... -++....+. +-.....++..+.+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~ll----v~~~~~~E~~~l~i 100 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVI----HTPVQSLEQLRIDM 100 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEE----EEECSBHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeE----EEcCCCHHHHHHHH
Confidence 5677 8999999999999995444 444332225788998865443210 011100000 00112333432444
Q ss_pred HHHH----hhCCCEEEEcCCCcHH------------------HH----HHHHH----HHHcCcEEEEEEcCcc
Q 017797 194 EAVE----NHMPEVIIVDEIGTEA------------------EA----HACRS----IAERGVMLIGTAHGEW 236 (365)
Q Consensus 194 a~al----~~~P~vlilDEp~~~~------------------d~----~~i~~----~~~~G~tVi~t~H~~~ 236 (365)
+..+ ..+|+++|+|-+++-. .. ..++. +.+.|++||+|.|-..
T Consensus 101 ~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 101 VNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence 4444 3579999999986521 11 11222 3567999999999977
No 194
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.97 E-value=2.9e-06 Score=79.99 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=28.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCC
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEF 150 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~ 150 (365)
+..|++++|+||||||||||+++|+|+..|+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~ 197 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRV 197 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccc
Confidence 45689999999999999999999999998874
No 195
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=1.9e-05 Score=78.09 Aligned_cols=99 Identities=19% Similarity=0.295 Sum_probs=61.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhC
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~ 200 (365)
+...+++.||||+|||++.+++++.+. ..+..+..+.-+. ..++ .....-+..+..|..+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~----~~~~~v~~~~l~~-------~~~G--------e~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTK----AAFIRVNGSEFVH-------KYLG--------EGPRMVRDVFRLARENA 265 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHT----CEEEEEEGGGTCC-------SSCS--------HHHHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC----CCeEEEecchhhc-------cccc--------hhHHHHHHHHHHHHHcC
Confidence 345799999999999999999999764 3455554322110 0111 11123345677888899
Q ss_pred CCEEEEcCCCcHH-------------HH----HHHHHHH----HcCcEEEEEEcCcchh
Q 017797 201 PEVIIVDEIGTEA-------------EA----HACRSIA----ERGVMLIGTAHGEWLE 238 (365)
Q Consensus 201 P~vlilDEp~~~~-------------d~----~~i~~~~----~~G~tVi~t~H~~~~~ 238 (365)
|.+|++||.-+-. .. .++..+- ..|+.||+||+..+..
T Consensus 266 P~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L 324 (428)
T 4b4t_K 266 PSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324 (428)
T ss_dssp SEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred CCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence 9999999994311 01 2222221 3467899999877643
No 196
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.95 E-value=3.3e-05 Score=73.22 Aligned_cols=117 Identities=17% Similarity=0.132 Sum_probs=74.4
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc---ccC-----CCCCchhhhhhhhhccC-
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE---IGG-----DGDIPHSAIGTARRMQV- 182 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~e---i~~-----~~~~~~~~~~~~~~~~~- 182 (365)
++.+..-+.+|++++|.|+||+|||||+..++...... +..+.|+.-... +.. ..+++...+ +...
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l----~~~~~ 132 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKENIKRLIVTAGSINAQKI----KAARR 132 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT-TCEEEEEESSSCHHHHHHHHHHHHTTCCHHHH----HSCHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEECCCCHHHHHHHHHHHHcCCCHHHH----hcCCC
Confidence 56555558899999999999999999999888665433 467777643211 100 011111111 0111
Q ss_pred -CCcchhHHHHHHHHHhhCCCEEEEcCCCcHHH-H-HHHHHHHH-cCcE--EEEEEc
Q 017797 183 -PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE-A-HACRSIAE-RGVM--LIGTAH 233 (365)
Q Consensus 183 -~S~g~~~r~~la~al~~~P~vlilDEp~~~~d-~-~~i~~~~~-~G~t--Vi~t~H 233 (365)
++.++++++..+.....++.+.+.|+|....+ + ..++.+.+ .|.. +|++-|
T Consensus 133 ~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 133 DFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 56778888888888888899999999864332 2 34555544 3766 777654
No 197
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.94 E-value=6.9e-07 Score=85.43 Aligned_cols=47 Identities=30% Similarity=0.385 Sum_probs=38.3
Q ss_pred eEEEEECCcccCcchhhhhcccCC-------cEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 99 GLTCRVGRAVSGHIDMVYDLLHYG-------KSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~l~~g-------~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
+++..|+.... ++.++..+..| +.++|+||||+|||||+++|++.+.
T Consensus 23 ~l~~~~g~~~~--~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 23 SLDEFIGQENV--KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp SGGGCCSCHHH--HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred cHHHccCcHHH--HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45555666555 78888888765 7899999999999999999999884
No 198
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.94 E-value=5.2e-06 Score=73.31 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=32.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
..+|.+++|+|||||||||+++.|++++.+. +..+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~-~~~v~~~~ 57 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ-GISVCVFH 57 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCeEEEec
Confidence 4568899999999999999999999999765 45566553
No 199
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.93 E-value=3e-06 Score=86.44 Aligned_cols=48 Identities=27% Similarity=0.468 Sum_probs=35.6
Q ss_pred eEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccC
Q 017797 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE 149 (365)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~ 149 (365)
++.++|..... +..+++.+ +|.+++|+||||+||||++++|++.+.+.
T Consensus 88 ~vk~~i~~~~~--l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 88 KVKERILEYLA--VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HHHHHHHHHHH--HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHH--HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 44444433333 55555555 78999999999999999999999998653
No 200
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=2.3e-05 Score=77.20 Aligned_cols=119 Identities=17% Similarity=0.252 Sum_probs=71.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhh
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
.+...+++.||||+|||++.+++++.... .+..+... ++. ...+ ......-+..+..|...
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~----~fi~v~~s-~l~------sk~v--------Gesek~ir~lF~~Ar~~ 274 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTSA----TFLRIVGS-ELI------QKYL--------GDGPRLCRQIFKVAGEN 274 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHTC----EEEEEESG-GGC------CSSS--------SHHHHHHHHHHHHHHHT
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhCC----CEEEEEHH-Hhh------hccC--------chHHHHHHHHHHHHHhc
Confidence 34467999999999999999999998643 44444332 111 0011 11122345677788889
Q ss_pred CCCEEEEcCCCcH-------------HHH----HHHHHHH----HcCcEEEEEEcCcchhHHhhhHHHHHHHcCcE---E
Q 017797 200 MPEVIIVDEIGTE-------------AEA----HACRSIA----ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD---T 255 (365)
Q Consensus 200 ~P~vlilDEp~~~-------------~d~----~~i~~~~----~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~---i 255 (365)
.|.||++||+-+- ... .++..+- ..++.||++|...+..+ +. ++.-|| .
T Consensus 275 aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LD----pA---LlRpGRfD~~ 347 (437)
T 4b4t_I 275 APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD----PA---LIRPGRIDRK 347 (437)
T ss_dssp CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCC----TT---SSCTTTEEEE
T ss_pred CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcC----HH---HhcCCceeEE
Confidence 9999999998541 001 2222221 23578899998776443 22 344344 4
Q ss_pred EEecCHHHH
Q 017797 256 VTLGDEEAR 264 (365)
Q Consensus 256 v~~g~~~~~ 264 (365)
+..+-|+.-
T Consensus 348 I~v~lPd~~ 356 (437)
T 4b4t_I 348 ILFENPDLS 356 (437)
T ss_dssp ECCCCCCHH
T ss_pred EEcCCcCHH
Confidence 666777653
No 201
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.91 E-value=4.8e-06 Score=75.75 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---hccccC
Q 017797 121 YGKSILFVGRPGVGKTTVMREIA---RVLSDE 149 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~---gll~~~ 149 (365)
++++++|+|||||||||++++|+ |+..++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 46899999999999999999999 887654
No 202
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.90 E-value=5.2e-06 Score=70.86 Aligned_cols=28 Identities=36% Similarity=0.573 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
.+.+++|+|||||||||+++.|++.+..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3678999999999999999999998753
No 203
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.89 E-value=3.6e-05 Score=76.49 Aligned_cols=120 Identities=19% Similarity=0.241 Sum_probs=72.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHh
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~ 198 (365)
+.+...++|.||||+|||+|.++|++.... .+..+... ++. ...+ ......-+..+..|..
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~----~fi~vs~s-~L~------sk~v--------Gesek~ir~lF~~Ar~ 300 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTDA----TFIRVIGS-ELV------QKYV--------GEGARMVRELFEMART 300 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHTC----EEEEEEGG-GGC------CCSS--------SHHHHHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCC----CeEEEEhH-Hhh------cccC--------CHHHHHHHHHHHHHHh
Confidence 345568999999999999999999997643 44444322 110 0011 1112234567788889
Q ss_pred hCCCEEEEcCCCcH----------HH---H----HHHHHHH----HcCcEEEEEEcCcchhHHhhhHHHHHHHcCc---E
Q 017797 199 HMPEVIIVDEIGTE----------AE---A----HACRSIA----ERGVMLIGTAHGEWLENIIKNPILSDLIGGV---D 254 (365)
Q Consensus 199 ~~P~vlilDEp~~~----------~d---~----~~i~~~~----~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g---~ 254 (365)
+.|.||++||.-+- .+ . ..+..+- ..++.||++|...+.. |+.+ +.-| +
T Consensus 301 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L----DpAL---lRpGRFD~ 373 (467)
T 4b4t_H 301 KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL----DPAL---LRPGRIDR 373 (467)
T ss_dssp TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB----CHHH---HSTTTCCE
T ss_pred cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC----Chhh---hccccccE
Confidence 99999999999641 11 1 1222221 2356788888776633 3333 3323 4
Q ss_pred EEEecCHHHH
Q 017797 255 TVTLGDEEAR 264 (365)
Q Consensus 255 iv~~g~~~~~ 264 (365)
.+..+-|..-
T Consensus 374 ~I~i~lPd~~ 383 (467)
T 4b4t_H 374 KVEFSLPDLE 383 (467)
T ss_dssp EECCCCCCHH
T ss_pred EEEeCCcCHH
Confidence 6677766653
No 204
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.88 E-value=4.8e-05 Score=66.98 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=62.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC--CCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHH
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--SNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 197 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~--~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al 197 (365)
.+|.++.++||.||||||.+--++.-.... +.++.++-. ...........+..+. .....+.+. . .+...+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~-g~kV~v~k~~~d~r~~~~~i~s~~g~~-~~a~~~~~~-~----~i~~~~ 78 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIA-KQKIQVFKPEIDNRYSKEDVVSHMGEK-EQAVAIKNS-R----EILKYF 78 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC-------CEEECTTSCE-EECEEESSS-T----HHHHHC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCccchHHHHHhhcCCc-eeeEeeCCH-H----HHHHHH
Confidence 458899999999999998887766655433 566666521 0111100000110000 000011111 1 111111
Q ss_pred hhCCCEEEEcCCCc--HHHHHHHHHHHHcCcEEEEEEcCcchh
Q 017797 198 NHMPEVIIVDEIGT--EAEAHACRSIAERGVMLIGTAHGEWLE 238 (365)
Q Consensus 198 ~~~P~vlilDEp~~--~~d~~~i~~~~~~G~tVi~t~H~~~~~ 238 (365)
..+.|+|++||..- ...++.+..+++.|+.||++.++.++-
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~l~~~~~~Vi~~Gl~~df~ 121 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDFR 121 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSBCTT
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEecccccc
Confidence 23579999999733 334677888788899999999987643
No 205
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.87 E-value=4e-05 Score=73.82 Aligned_cols=70 Identities=29% Similarity=0.404 Sum_probs=45.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhC
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~ 200 (365)
....++|.||+|+||||++++|+.... ..++.+....-.. ...+ ......+..+..+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~----~~~~~i~~~~l~~-------~~~g--------~~~~~~~~~~~~a~~~~ 176 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG----ATFFSISASSLTS-------KWVG--------EGEKMVRALFAVARCQQ 176 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT----CEEEEEEGGGGCC-------SSTT--------HHHHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC----CeEEEEehHHhhc-------cccc--------hHHHHHHHHHHHHHhcC
Confidence 456899999999999999999998753 3444443321110 0000 11122344556666788
Q ss_pred CCEEEEcCC
Q 017797 201 PEVIIVDEI 209 (365)
Q Consensus 201 P~vlilDEp 209 (365)
|.+|++||+
T Consensus 177 ~~vl~iDEi 185 (357)
T 3d8b_A 177 PAVIFIDEI 185 (357)
T ss_dssp SEEEEEETH
T ss_pred CeEEEEeCc
Confidence 999999999
No 206
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.86 E-value=7.4e-06 Score=73.91 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=30.9
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC
Q 017797 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~ 160 (365)
..++|++++|.|||||||||+++.|+++ ++.+.+..++
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~ 53 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEP 53 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecC
Confidence 3567999999999999999999999997 3456655543
No 207
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.85 E-value=6.6e-06 Score=83.97 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=35.5
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 017797 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~ 159 (365)
.+++|++++|+|+|||||||++++|++.+.+..++.+.+++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 356899999999999999999999999998875456766654
No 208
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.85 E-value=5.3e-05 Score=66.83 Aligned_cols=37 Identities=35% Similarity=0.567 Sum_probs=29.3
Q ss_pred chhhhhcccCCc---EEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 112 IDMVYDLLHYGK---SILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 112 ~~~l~~~l~~g~---~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
++.+...+..+. .++|.||+|+||||+++.++..+..
T Consensus 32 ~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 32 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp HHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455555565554 7999999999999999999987754
No 209
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.85 E-value=7.5e-05 Score=65.87 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=63.5
Q ss_pred CCcEEEEEcCCCCcHH-HHHHHHHhccccCCCCeEEEEcCC--CcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHH
Q 017797 121 YGKSILFVGRPGVGKT-TVMREIARVLSDEFQKRVVIVDTS--NEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 197 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKT-Tllr~l~gll~~~~~~~i~~i~~~--~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al 197 (365)
.|++..|.||.||||| .||+.+-..... +.++.++... ..+. .....+.... ..-....+. ...+. .
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--~~kvl~~kp~~D~R~~-~~i~S~~g~~-~~A~~~~~~-~d~~~-----~ 88 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYAKDTRYS-SSFCTHDRNT-MEALPACLL-RDVAQ-----E 88 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEETTCCCGG-GSCCHHHHHH-SEEEEESSG-GGGHH-----H
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEccccCccch-hhhhhccCCc-ccceecCCH-HHHHH-----h
Confidence 4889999999999999 666766665543 4677766321 1111 1111111100 000001111 11111 1
Q ss_pred hhCCCEEEEcCCCc-HHHHHHHHHHHHcCcEEEEEEcCcchh
Q 017797 198 NHMPEVIIVDEIGT-EAEAHACRSIAERGVMLIGTAHGEWLE 238 (365)
Q Consensus 198 ~~~P~vlilDEp~~-~~d~~~i~~~~~~G~tVi~t~H~~~~~ 238 (365)
..+.|+|++||.-= ..-.+.+..+++.|+.||++..+.++-
T Consensus 89 ~~~~DvIlIDEaQFfk~~ve~~~~L~~~gk~VI~~GL~~DF~ 130 (195)
T 1w4r_A 89 ALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQ 130 (195)
T ss_dssp HHTCSEEEESSGGGCTTHHHHHHHHHHTTCEEEEEEESBCTT
T ss_pred ccCCCEEEEEchhhhHHHHHHHHHHHHCCCeEEEEecccccc
Confidence 45789999999922 223566788889999999999998844
No 210
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.85 E-value=6.5e-06 Score=70.52 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=24.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
.+|++++|+|||||||||+++.|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 458899999999999999999999976
No 211
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.85 E-value=1.2e-06 Score=79.41 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCC
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLSDEFQ 151 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~~~~~ 151 (365)
++++|+|||||||||||++|+|++.|+.+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCC
Confidence 78899999999999999999999998743
No 212
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.85 E-value=1e-05 Score=77.07 Aligned_cols=58 Identities=22% Similarity=0.170 Sum_probs=39.7
Q ss_pred EEEEECCcccCcchhhhhcccCCc------EEEEEcCCCCcHHHHHHHHHhccccC-CCCeEEEEcC
Q 017797 100 LTCRVGRAVSGHIDMVYDLLHYGK------SILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVDT 159 (365)
Q Consensus 100 l~~r~~~~~~~~~~~l~~~l~~g~------~v~iiGpnGsGKTTllr~l~gll~~~-~~~~i~~i~~ 159 (365)
+++.|+.... +..++..+..+. +++|+||||||||||+++|.+++... .++.+.++..
T Consensus 66 l~~~~~~~~~--l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~ 130 (321)
T 3tqc_A 66 LSFYVTARQT--LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITT 130 (321)
T ss_dssp HHHHHHHHHH--HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEG
T ss_pred HHHhhcchHH--HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEee
Confidence 4444544444 555665554433 89999999999999999999998732 1345666543
No 213
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.84 E-value=6.5e-05 Score=72.82 Aligned_cols=115 Identities=16% Similarity=0.148 Sum_probs=64.9
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCC----CCCchhhhhhhhhccCCCcchhHHHHH
Q 017797 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----GDIPHSAIGTARRMQVPEPSLQHKVMI 193 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~----~~~~~~~~~~~~~~~~~S~g~~~r~~l 193 (365)
-+++|.++.|.||+|+|||||+..++...... +..+.|++........ .++....+. -.+ ..... +...+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~~E~s~~~~~a~~~g~d~~~l~---i~~-~~~~e-~~l~~ 143 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEHALDPVYARALGVNTDELL---VSQ-PDNGE-QALEI 143 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHHHHHTTCCGGGCE---EEC-CSSHH-HHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEECCCChhHHHHHHcCCCHHHce---eec-CCcHH-HHHHH
Confidence 46789999999999999999998887765433 5678888754322100 001000000 001 11122 22233
Q ss_pred HHHHh--hCCCEEEEcCCCcHH----------------H----HHHHHHH----HHcCcEEEEEEcCcchh
Q 017797 194 EAVEN--HMPEVIIVDEIGTEA----------------E----AHACRSI----AERGVMLIGTAHGEWLE 238 (365)
Q Consensus 194 a~al~--~~P~vlilDEp~~~~----------------d----~~~i~~~----~~~G~tVi~t~H~~~~~ 238 (365)
...+. .+|++||+|.++.-. . .+.++.+ .+.+++||++.|-....
T Consensus 144 l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~ 214 (366)
T 1xp8_A 144 MELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKI 214 (366)
T ss_dssp HHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC----
T ss_pred HHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEeccccc
Confidence 33332 579999999986411 1 1233333 45689999999976533
No 214
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.83 E-value=2.7e-05 Score=72.99 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
..++|.||||+|||++.++|+..+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999873
No 215
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.83 E-value=8.2e-05 Score=69.39 Aligned_cols=27 Identities=41% Similarity=0.628 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
+..++|.||+|+||||++++++..+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999988854
No 216
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.83 E-value=3.3e-06 Score=79.97 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=25.1
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhccccC
Q 017797 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDE 149 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~ 149 (365)
.+.+|++++|+||||||||||+++|+|+..+.
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~ 200 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLR 200 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccccc
Confidence 35679999999999999999999999998776
No 217
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.82 E-value=8.1e-06 Score=79.51 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=32.8
Q ss_pred cchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 111 ~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++++++.+++|++++|+||||||||||+++|++..
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 367788889999999999999999999999999964
No 218
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=2.6e-05 Score=77.16 Aligned_cols=119 Identities=17% Similarity=0.245 Sum_probs=72.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhh
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
.+...+++.||||+|||++.+++++.... .+..+..+.-+ ...+ ......-+..+..|...
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~----~f~~v~~s~l~-------~~~v--------Gese~~ir~lF~~A~~~ 273 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNA----TFLKLAAPQLV-------QMYI--------GEGAKLVRDAFALAKEK 273 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTC----EEEEEEGGGGC-------SSCS--------SHHHHHHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCC----CEEEEehhhhh-------hccc--------chHHHHHHHHHHHHHhc
Confidence 34467999999999999999999998643 44444332111 0011 11122345667788889
Q ss_pred CCCEEEEcCCCcH-------H-----HH-----HHHHHH----HHcCcEEEEEEcCcchhHHhhhHHHHHHHcCcE---E
Q 017797 200 MPEVIIVDEIGTE-------A-----EA-----HACRSI----AERGVMLIGTAHGEWLENIIKNPILSDLIGGVD---T 255 (365)
Q Consensus 200 ~P~vlilDEp~~~-------~-----d~-----~~i~~~----~~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~---i 255 (365)
.|.||++||.-+- . .. .++..+ ...++.||++|...+..+ +. ++..|| .
T Consensus 274 aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD----~A---llRpGRfD~~ 346 (434)
T 4b4t_M 274 APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD----PA---LLRSGRLDRK 346 (434)
T ss_dssp CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCC----TT---TCSTTSEEEE
T ss_pred CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcC----Hh---HhcCCceeEE
Confidence 9999999998431 0 01 122222 123578898998776443 22 444443 5
Q ss_pred EEecCHHHH
Q 017797 256 VTLGDEEAR 264 (365)
Q Consensus 256 v~~g~~~~~ 264 (365)
+..+-|+.-
T Consensus 347 I~i~lPd~~ 355 (434)
T 4b4t_M 347 IEFPLPSED 355 (434)
T ss_dssp EECCCCCHH
T ss_pred EEeCCcCHH
Confidence 777777653
No 219
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.82 E-value=8.7e-06 Score=74.64 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=27.5
Q ss_pred hcccCCcEEEEEcCCCCcHHHHHHHHH---hccccC
Q 017797 117 DLLHYGKSILFVGRPGVGKTTVMREIA---RVLSDE 149 (365)
Q Consensus 117 ~~l~~g~~v~iiGpnGsGKTTllr~l~---gll~~~ 149 (365)
....+|.+++|+|||||||||+++.|+ |+..++
T Consensus 22 ~m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 22 HMTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp -CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 334678999999999999999999999 766554
No 220
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.81 E-value=1.5e-05 Score=76.36 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=58.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccC-----CCCeEEEEcCCCcccCCCCCchhhhh-hhhhcc--CCCcch--hH-
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDE-----FQKRVVIVDTSNEIGGDGDIPHSAIG-TARRMQ--VPEPSL--QH- 189 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~-----~~~~i~~i~~~~ei~~~~~~~~~~~~-~~~~~~--~~S~g~--~~- 189 (365)
.+..++|.||+|+||||+++.++..+... .+..+++++-..... +...+. ....++ ....|. ..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~~ 117 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRET-----PYRVASAIAEAVGVRVPFTGLSVGEV 117 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCS-----HHHHHHHHHHHHSCCCCSSCCCHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCC-----HHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence 45689999999999999999999887432 123455554321100 000000 000111 111111 11
Q ss_pred HHHHHHHHh--hCCCEEEEcCCCcHHH----HHHHHHHH--------HcCcEEEEEEcCcch
Q 017797 190 KVMIEAVEN--HMPEVIIVDEIGTEAE----AHACRSIA--------ERGVMLIGTAHGEWL 237 (365)
Q Consensus 190 r~~la~al~--~~P~vlilDEp~~~~d----~~~i~~~~--------~~G~tVi~t~H~~~~ 237 (365)
.-.+..++. ..|.+|++||+..-.+ .+.+..+. ..+..+|++++..+.
T Consensus 118 ~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~ 179 (387)
T 2v1u_A 118 YERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGF 179 (387)
T ss_dssp HHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTT
T ss_pred HHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCch
Confidence 112333332 2377999999977432 23443332 335688899987753
No 221
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.79 E-value=3e-05 Score=71.39 Aligned_cols=99 Identities=20% Similarity=0.287 Sum_probs=55.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCC
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
...++|.||+|+||||++++++.... ..++.+.....+.. ..... .....+..+..+....|
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~----~~~~~i~~~~~~~g---~~~~~-----------~~~~~~~~~~~~~~~~~ 125 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESN----FPFIKICSPDKMIG---FSETA-----------KCQAMKKIFDDAYKSQL 125 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHT----CSEEEEECGGGCTT---CCHHH-----------HHHHHHHHHHHHHTSSE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhC----CCEEEEeCHHHhcC---CchHH-----------HHHHHHHHHHHHHhcCC
Confidence 45799999999999999999999753 23444433222210 00000 00112234445555679
Q ss_pred CEEEEcCCCc------------HHHHHHHHHHHH----cC--cEEEEEEcCcchh
Q 017797 202 EVIIVDEIGT------------EAEAHACRSIAE----RG--VMLIGTAHGEWLE 238 (365)
Q Consensus 202 ~vlilDEp~~------------~~d~~~i~~~~~----~G--~tVi~t~H~~~~~ 238 (365)
.+|++||+-. ..-.+.+..+.+ .+ +.||+|+...+..
T Consensus 126 ~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l 180 (272)
T 1d2n_A 126 SCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL 180 (272)
T ss_dssp EEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHH
T ss_pred cEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhc
Confidence 9999999632 112344444433 22 3467777766533
No 222
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.79 E-value=7.5e-05 Score=63.50 Aligned_cols=27 Identities=30% Similarity=0.674 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
+..++|.||+|+||||+++.++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999998754
No 223
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.79 E-value=1.3e-05 Score=75.69 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=27.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCC
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEF 150 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~~~ 150 (365)
..|++++|+||||||||||+++|+ ++.+..
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~ 192 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRT 192 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcc
Confidence 468999999999999999999999 887763
No 224
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.79 E-value=1.3e-05 Score=77.59 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=34.5
Q ss_pred eeeEEEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHh
Q 017797 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIAR 144 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~g 144 (365)
+++|+++- ... ++.+++.+.+| +++|+|||||||||++.+|.+
T Consensus 6 i~~L~l~~--~~~--~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 6 LSALSTLN--YRN--LAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEEES--BTT--CCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EeEEEEeC--ccc--eeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 55677652 222 56777888888 999999999999999999998
No 225
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.77 E-value=5.2e-05 Score=73.03 Aligned_cols=71 Identities=21% Similarity=0.392 Sum_probs=44.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCC
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
...++|.||+|+||||++++++..+. ..++.+... ++.. .. ........+..+..+....|
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~----~~~~~v~~~-~l~~------~~--------~g~~~~~~~~~f~~a~~~~~ 144 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN----STFFSVSSS-DLVS------KW--------MGESEKLVKQLFAMARENKP 144 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT----CEEEEEEHH-HHHS------CC-----------CHHHHHHHHHHHHHTSS
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC----CCEEEeeHH-HHhh------hh--------cchHHHHHHHHHHHHHHcCC
Confidence 45699999999999999999999873 334444221 1100 00 01112233345566667799
Q ss_pred CEEEEcCCCc
Q 017797 202 EVIIVDEIGT 211 (365)
Q Consensus 202 ~vlilDEp~~ 211 (365)
.+|++||+..
T Consensus 145 ~vl~iDEid~ 154 (355)
T 2qp9_X 145 SIIFIDQVDA 154 (355)
T ss_dssp EEEEEECGGG
T ss_pred eEEEEechHh
Confidence 9999999964
No 226
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.76 E-value=8e-06 Score=70.73 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccC
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLSDE 149 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~~~ 149 (365)
+.++|+||+|||||||++.|++++.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 479999999999999999999999876
No 227
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.76 E-value=7.9e-05 Score=73.97 Aligned_cols=118 Identities=19% Similarity=0.370 Sum_probs=66.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhC
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~ 200 (365)
+...++|.||+|+||||++++++..+. +..+..+....-+. ...+ ......+..+..+....
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~---~~~~~~v~~~~l~~-------~~~g--------~~~~~~~~~f~~a~~~~ 227 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSISSSDLVS-------KWLG--------ESEKLVKNLFQLARENK 227 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCC---SSEEEEECCC------------------------CCCTHHHHHHHHHHSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC---CCCEEEEeHHHHHh-------hhcc--------hHHHHHHHHHHHHHHcC
Confidence 346899999999999999999999872 23445444322110 0000 00112233455666788
Q ss_pred CCEEEEcCCCcH----------HHHHHHHHHH---------HcCcEEEEEEcCcchhHHhhhHHHHHHHcCc-EEEEecC
Q 017797 201 PEVIIVDEIGTE----------AEAHACRSIA---------ERGVMLIGTAHGEWLENIIKNPILSDLIGGV-DTVTLGD 260 (365)
Q Consensus 201 P~vlilDEp~~~----------~d~~~i~~~~---------~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g-~iv~~g~ 260 (365)
|.+|++||+..- ....+...+. ..++.||++++..+.. ++. ++.+. +.+....
T Consensus 228 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~l----d~a---l~rRf~~~i~i~~ 300 (444)
T 2zan_A 228 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVL----DSA---IRRRFEKRIYIPL 300 (444)
T ss_dssp SEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGS----CHH---HHTTCCEEEECCC
T ss_pred CeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcccc----CHH---HHhhcceEEEeCC
Confidence 999999999642 0112222221 2357888888776532 222 22333 4566655
Q ss_pred HHH
Q 017797 261 EEA 263 (365)
Q Consensus 261 ~~~ 263 (365)
|..
T Consensus 301 P~~ 303 (444)
T 2zan_A 301 PEA 303 (444)
T ss_dssp CCH
T ss_pred cCH
Confidence 544
No 228
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.75 E-value=0.00014 Score=70.74 Aligned_cols=71 Identities=18% Similarity=0.384 Sum_probs=45.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhC
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~ 200 (365)
++..++|.||+|+||||++++|+... +..++.+.-..-. ....+ ......+..+..+....
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~----~~~~~~v~~~~l~-------~~~~g--------~~~~~~~~~~~~a~~~~ 207 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES----NATFFNISAASLT-------SKYVG--------EGEKLVRALFAVARELQ 207 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT----TCEEEEECSCCC----------------------CHHHHHHHHHHHHHSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh----cCcEEEeeHHHhh-------ccccc--------hHHHHHHHHHHHHHhcC
Confidence 35689999999999999999998865 3455555432211 00010 11122334556666778
Q ss_pred CCEEEEcCCC
Q 017797 201 PEVIIVDEIG 210 (365)
Q Consensus 201 P~vlilDEp~ 210 (365)
|.+|++||+-
T Consensus 208 ~~il~iDEid 217 (389)
T 3vfd_A 208 PSIIFIDQVD 217 (389)
T ss_dssp SEEEEEETGG
T ss_pred CeEEEEECch
Confidence 9999999994
No 229
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=8.5e-05 Score=70.41 Aligned_cols=36 Identities=28% Similarity=0.544 Sum_probs=30.1
Q ss_pred chhhhhcccCC--cEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 112 IDMVYDLLHYG--KSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 112 ~~~l~~~l~~g--~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.+.+...+..| ..++|.||||+||||+++++++.+.
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56666667666 4599999999999999999999875
No 230
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.73 E-value=0.00017 Score=68.25 Aligned_cols=44 Identities=25% Similarity=0.264 Sum_probs=33.4
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhc--ccc---------CCC----CeEEEEcCCC
Q 017797 118 LLHYGKSILFVGRPGVGKTTVMREIARV--LSD---------EFQ----KRVVIVDTSN 161 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTllr~l~gl--l~~---------~~~----~~i~~i~~~~ 161 (365)
-+++|+++.|.||||+||||++..++.. +++ ..+ .++.|++...
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~ 152 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG 152 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC
Confidence 4678999999999999999999988863 222 223 5788887543
No 231
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.73 E-value=4.2e-05 Score=72.43 Aligned_cols=71 Identities=23% Similarity=0.432 Sum_probs=45.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCC
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
...++|.||+|+||||++++++.... ..+..+... ++. ....+ ......+..+..+....|
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~----~~~~~v~~~-~l~------~~~~g--------~~~~~~~~~f~~a~~~~~ 111 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN----STFFSVSSS-DLV------SKWMG--------ESEKLVKQLFAMARENKP 111 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT----CEEEEEEHH-HHH------TTTGG--------GHHHHHHHHHHHHHHTSS
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC----CCEEEEchH-HHh------hcccc--------hHHHHHHHHHHHHHhcCC
Confidence 45799999999999999999998753 344444321 110 00000 111223345666777899
Q ss_pred CEEEEcCCCc
Q 017797 202 EVIIVDEIGT 211 (365)
Q Consensus 202 ~vlilDEp~~ 211 (365)
.+|++||+-.
T Consensus 112 ~vl~iDEid~ 121 (322)
T 3eie_A 112 SIIFIDQVDA 121 (322)
T ss_dssp EEEEEECGGG
T ss_pred eEEEechhhh
Confidence 9999999864
No 232
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.72 E-value=1.8e-05 Score=75.80 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=43.1
Q ss_pred EEEECCcccCcchhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 101 TCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 101 ~~r~~~~~~~~~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
.++|+.... ++.+++...++.+++|+|+||+|||||++.|++.+.+. ++++.+++
T Consensus 37 ~~~~~~~~~--~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~-~~~v~v~~ 91 (341)
T 2p67_A 37 RHQALSTQL--LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE-GLKVAVIA 91 (341)
T ss_dssp HHHHHHHHH--HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred hhhhHHHHH--HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 334444444 67778888889999999999999999999999999775 56666654
No 233
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.72 E-value=1.2e-05 Score=81.18 Aligned_cols=32 Identities=38% Similarity=0.564 Sum_probs=25.8
Q ss_pred hhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 114 MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 114 ~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.+++.+++| ++|+||||+|||||+++|++...
T Consensus 58 ~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 58 EMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp TTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred hccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 333444555 99999999999999999999874
No 234
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.72 E-value=1.7e-05 Score=70.26 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=25.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.+|+.++|+||||||||||++.|++..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999865
No 235
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.71 E-value=0.0002 Score=71.02 Aligned_cols=86 Identities=24% Similarity=0.319 Sum_probs=52.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccC-----C---CcchhHHHHH
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-----P---EPSLQHKVMI 193 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~-----~---S~g~~~r~~l 193 (365)
+.+++++|+||+||||++..|+..+... +.++..++....-.. .+.+... ...+.++ . +...-.+-++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~-G~kVllv~~D~~R~a--a~eqL~~-~~~~~gvpv~~~~~~~dp~~i~~~al 175 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR-GYKVGVVCSDTWRPG--AYHQLRQ-LLDRYHIEVFGNPQEKDAIKLAKEGV 175 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCCSSTH--HHHHHHH-HHGGGTCEEECCTTCCCHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCcchh--HHHHHHH-HHHhcCCcEEecCCCCCHHHHHHHHH
Confidence 5689999999999999999999998765 677877764321100 0000000 0011111 0 1111123356
Q ss_pred HHHHhhCCCEEEEcCCCc
Q 017797 194 EAVENHMPEVIIVDEIGT 211 (365)
Q Consensus 194 a~al~~~P~vlilDEp~~ 211 (365)
..+...++|++|+|.|+.
T Consensus 176 ~~a~~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 176 DYFKSKGVDIIIVDTAGR 193 (443)
T ss_dssp HHHHHTTCSEEEEECCCC
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 666667899999999974
No 236
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.69 E-value=0.00012 Score=63.71 Aligned_cols=36 Identities=33% Similarity=0.484 Sum_probs=27.4
Q ss_pred chhhhhcccCC--cEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 112 IDMVYDLLHYG--KSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 112 ~~~l~~~l~~g--~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.+.+...+..+ ..++|.||+|+||||+++.++..+.
T Consensus 26 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 26 IQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp HHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 44454555443 3599999999999999999998763
No 237
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.69 E-value=0.00015 Score=69.80 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=24.0
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhc
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gl 145 (365)
++.+++.++ .++|+|++|||||||+++|+|.
T Consensus 27 l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 27 LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp C----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 556666666 7999999999999999999994
No 238
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.68 E-value=1.9e-05 Score=74.77 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc-cCCCCeEEEEc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLS-DEFQKRVVIVD 158 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~-~~~~~~i~~i~ 158 (365)
+..++|.||+|+|||+|+++|+..+. .. +..+.++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~-g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK-GVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS-CCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 57899999999999999999999876 43 55666554
No 239
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.68 E-value=2.5e-05 Score=67.23 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=29.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
.+|.+++|+|++||||||+++.|++.+.+. +..++.++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~-g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCH-GIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhC-CCcEEEEC
Confidence 358899999999999999999999988663 44444443
No 240
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.67 E-value=2e-05 Score=69.52 Aligned_cols=34 Identities=21% Similarity=0.123 Sum_probs=28.6
Q ss_pred hhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 114 MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 114 ~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
++-..+.+|.+++|+|++||||||+++.|++.+.
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3345577889999999999999999999999763
No 241
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.67 E-value=9.7e-05 Score=66.12 Aligned_cols=113 Identities=14% Similarity=0.203 Sum_probs=61.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC--CcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHH
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS--NEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 197 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~--~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al 197 (365)
.+|.+..++||-||||||.+--++.-.... +.++.++-.. ..........+..+. .....+.+. .. .+.. .
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~kVli~k~~~d~R~ge~~i~s~~g~~-~~a~~~~~~-~~---~~~~-~ 98 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFA-KQHAIVFKPCIDNRYSEEDVVSHNGLK-VKAVPVSAS-KD---IFKH-I 98 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEECC------------------CCEEECSSG-GG---GGGG-C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCCcchHHHHHhhcCCe-eEEeecCCH-HH---HHHH-H
Confidence 468899999999999998876666555433 5666665211 111100000111000 000001000 00 0000 0
Q ss_pred hhCCCEEEEcCCCc--HHHHHHHHHHHHcCcEEEEEEcCcchhH
Q 017797 198 NHMPEVIIVDEIGT--EAEAHACRSIAERGVMLIGTAHGEWLEN 239 (365)
Q Consensus 198 ~~~P~vlilDEp~~--~~d~~~i~~~~~~G~tVi~t~H~~~~~~ 239 (365)
..+.|+|++||.-- ...++.+..+++.|+.||++.++.++-.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~~~~~~Vi~~Gl~~DF~~ 142 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQDFRG 142 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEECSBCTTS
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHhhCCCEEEEEeccccccc
Confidence 12589999999943 3456778887888999999999887543
No 242
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.65 E-value=0.00024 Score=59.86 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|+||+|||||++.+++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 243
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.61 E-value=0.00023 Score=63.83 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=28.7
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHh--ccccCCCCeEEEEc
Q 017797 118 LLHYGKSILFVGRPGVGKTTVMREIAR--VLSDEFQKRVVIVD 158 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTllr~l~g--ll~~~~~~~i~~i~ 158 (365)
=+++|+++.|.|+||+||||++..++- ..+. +..+.|+.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s 66 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeec
Confidence 477899999999999999999876553 2222 45566653
No 244
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.60 E-value=3.8e-05 Score=66.48 Aligned_cols=39 Identities=36% Similarity=0.613 Sum_probs=32.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
..+|.++.|+|++||||||+++.|+..+... +..+.+++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~-~~~~~~~~ 48 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKE-GYRVEVLD 48 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEee
Confidence 4568899999999999999999999998765 45555553
No 245
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.59 E-value=1.8e-05 Score=72.55 Aligned_cols=25 Identities=40% Similarity=0.694 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
..++|.||+|+||||++++|+....
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 4588999999999999999999764
No 246
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.59 E-value=9.1e-05 Score=69.70 Aligned_cols=44 Identities=27% Similarity=0.287 Sum_probs=36.4
Q ss_pred hhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC
Q 017797 115 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160 (365)
Q Consensus 115 l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~ 160 (365)
+++..+ +.+++++|+||+||||++..|++.+.+. ++++.+++..
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~~D 135 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVGAD 135 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 444444 8899999999999999999999999875 6788887654
No 247
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.59 E-value=0.00013 Score=69.41 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=24.3
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhc
Q 017797 118 LLHYGKSILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTllr~l~gl 145 (365)
-+.+|..++|.||||+|||||+..++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3566778899999999999999999875
No 248
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.58 E-value=4.3e-05 Score=73.54 Aligned_cols=36 Identities=19% Similarity=0.491 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
+..++|+|+||||||||++.|++.+.+. +.++.++.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~-~~~v~V~~ 109 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTER-GHKLSVLA 109 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhc-CCeEEEEe
Confidence 6789999999999999999999998776 45666554
No 249
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.58 E-value=0.00016 Score=75.46 Aligned_cols=124 Identities=14% Similarity=0.060 Sum_probs=68.4
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhccccCC-CCeEEEEcCCCcccC---------CCCCchh-hhhh-hhhccCC-C
Q 017797 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-QKRVVIVDTSNEIGG---------DGDIPHS-AIGT-ARRMQVP-E 184 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~-~~~i~~i~~~~ei~~---------~~~~~~~-~~~~-~~~~~~~-S 184 (365)
.+.++..++|+|++|+|||||++.|++...+.. .+.| .+. ..+.. .....+. .+.. ..+..+. .
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V--~~g-~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV--EEG-TTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG--GGT-CCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee--cCC-cccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 356788999999999999999999997765311 1122 111 00000 0000000 0000 0001111 1
Q ss_pred cch-hH-HHHHHHHHhhCCCEEEEcCCCcHHHH---HHHHHHHHcCcEEEEEEcCcchhHHhhhHHH
Q 017797 185 PSL-QH-KVMIEAVENHMPEVIIVDEIGTEAEA---HACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (365)
Q Consensus 185 ~g~-~~-r~~la~al~~~P~vlilDEp~~~~d~---~~i~~~~~~G~tVi~t~H~~~~~~~~~d~i~ 246 (365)
+|. .+ ......+...++.++++| ++.+.+. ..+..+.+.|..+|++.|.++.. ...++++
T Consensus 82 pG~~~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~ 146 (665)
T 2dy1_A 82 PGYGDFVGEIRGALEAADAALVAVS-AEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALL 146 (665)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHH
T ss_pred CCccchHHHHHHHHhhcCcEEEEEc-CCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHH
Confidence 222 22 334455556789999999 8776553 45556667789999999998865 4344444
No 250
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.57 E-value=3.2e-05 Score=68.55 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=33.9
Q ss_pred hcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 117 ~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
..+.+|.++.|+|++||||||+.+.|++.+.+..+..+.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 446789999999999999999999999998754344455554
No 251
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.56 E-value=0.00012 Score=70.10 Aligned_cols=121 Identities=18% Similarity=0.244 Sum_probs=60.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccC------C-CCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcch--hH-HH
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDE------F-QKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSL--QH-KV 191 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~------~-~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~--~~-r~ 191 (365)
+..++|.||+|+||||+++.++..+... . +..+++++-.........+....+...........+. .. ..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 124 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYID 124 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Confidence 4689999999999999999999877322 1 3455555421100000000000000000000001111 11 11
Q ss_pred HHHHHHhhCCCEEEEcCCCcHHH---HHH-HHHHHH--cCcEEEEEEcCcchhHHhh
Q 017797 192 MIEAVENHMPEVIIVDEIGTEAE---AHA-CRSIAE--RGVMLIGTAHGEWLENIIK 242 (365)
Q Consensus 192 ~la~al~~~P~vlilDEp~~~~d---~~~-i~~~~~--~G~tVi~t~H~~~~~~~~~ 242 (365)
.+...+...+.+|++||.-.-.. .+. +..+.+ .+..+|++++.......+.
T Consensus 125 ~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~ 181 (384)
T 2qby_B 125 KIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYME 181 (384)
T ss_dssp HHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSC
T ss_pred HHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhC
Confidence 23333333344999999965332 234 444444 4688899998775433333
No 252
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.55 E-value=3.8e-05 Score=75.81 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=27.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccC
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDE 149 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~ 149 (365)
+.+|++++|+|||||||||++++|.+++.+.
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 4568999999999999999999999998764
No 253
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.55 E-value=0.00026 Score=68.03 Aligned_cols=25 Identities=24% Similarity=0.578 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
.-.++|+|+||+|||||++.+++..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999865
No 254
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.54 E-value=6.7e-05 Score=67.78 Aligned_cols=37 Identities=32% Similarity=0.448 Sum_probs=30.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
.+|.++.|.||+||||||+++.|+..+.+ +..+....
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~~~ 60 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIMTR 60 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEEEC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCceeec
Confidence 47899999999999999999999999876 44555443
No 255
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.53 E-value=2.6e-05 Score=74.28 Aligned_cols=44 Identities=34% Similarity=0.573 Sum_probs=36.6
Q ss_pred ECCcccCcchhhhhcccCCcE--EEEEcCCCCcHHHHHHHHHhccccC
Q 017797 104 VGRAVSGHIDMVYDLLHYGKS--ILFVGRPGVGKTTVMREIARVLSDE 149 (365)
Q Consensus 104 ~~~~~~~~~~~l~~~l~~g~~--v~iiGpnGsGKTTllr~l~gll~~~ 149 (365)
++...+ ++.++..+..|++ ++|.||||+||||+++++++.+.+.
T Consensus 28 ~g~~~~--~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 28 YGQNEV--ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp CSCHHH--HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred cCcHHH--HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 344444 7788888888887 9999999999999999999998654
No 256
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.52 E-value=0.00023 Score=63.72 Aligned_cols=112 Identities=15% Similarity=0.188 Sum_probs=60.8
Q ss_pred cCCcEEEEEcCCCCcHHH-HHHHHHhccccCCCCeEEEEc-CC-CcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHH
Q 017797 120 HYGKSILFVGRPGVGKTT-VMREIARVLSDEFQKRVVIVD-TS-NEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 196 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTT-llr~l~gll~~~~~~~i~~i~-~~-~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~a 196 (365)
..|.+..|+||-|||||| |++.+-++... +.++.++- .. ..........+..... .-..+.+...-. ..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~--g~kvli~kp~~D~R~~~~~I~Sr~G~~~-~a~~v~~~~di~-----~~ 97 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYA--KQKVVVFKPAIDDRYHKEKVVSHNGNAI-EAINISKASEIM-----TH 97 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC-----------CBTTBCC-EEEEESSGGGGG-----GS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHc--CCceEEEEeccCCcchhhhHHHhcCCce-eeEEeCCHHHHH-----HH
Confidence 458899999999999999 77887666543 44554441 11 1110000001100000 000000000000 00
Q ss_pred HhhCCCEEEEcCC--CcHHHHHHHHHHHHcCcEEEEEEcCcchhH
Q 017797 197 ENHMPEVIIVDEI--GTEAEAHACRSIAERGVMLIGTAHGEWLEN 239 (365)
Q Consensus 197 l~~~P~vlilDEp--~~~~d~~~i~~~~~~G~tVi~t~H~~~~~~ 239 (365)
+..++++|++||. .+..-++.+..+++.|+.||...=+.++-.
T Consensus 98 i~~~~dvV~IDEaQFf~~~~v~~l~~la~~gi~Vi~~GLd~DF~~ 142 (219)
T 3e2i_A 98 DLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDFRG 142 (219)
T ss_dssp CCTTCSEEEECCGGGSCTHHHHHHHHHHHTTCEEEEEEESBCTTS
T ss_pred HhcCCCEEEEechhcCCHHHHHHHHHHHHCCCEEEEeeccccccc
Confidence 1358899999998 333446777788888999999888776543
No 257
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.52 E-value=0.00012 Score=77.57 Aligned_cols=98 Identities=19% Similarity=0.341 Sum_probs=60.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCC
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
...++|.||||+||||+.|++++.+. ..+..++...-+. .. ......+-+..+..|..+.|
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg----~~~~~v~~~~l~s-------k~--------~gese~~lr~lF~~A~~~~P 298 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETG----AFFFLINGPEIMS-------KL--------AGESESNLRKAFEEAEKNAP 298 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTT----CEEEEEEHHHHHS-------SC--------TTHHHHHHHHHHHHHTTSCS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC----CeEEEEEhHHhhc-------cc--------chHHHHHHHHHHHHHHHcCC
Confidence 35799999999999999999998763 3455443211110 00 00112234456777888999
Q ss_pred CEEEEcCCCcH----------HHHHHHHHH--------HHcCcEEEEEEcCcchh
Q 017797 202 EVIIVDEIGTE----------AEAHACRSI--------AERGVMLIGTAHGEWLE 238 (365)
Q Consensus 202 ~vlilDEp~~~----------~d~~~i~~~--------~~~G~tVi~t~H~~~~~ 238 (365)
.||++||+-+- .+...+.++ .+.++.||++|...+..
T Consensus 299 sIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp EEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred eEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 99999998541 111222221 13467888888766533
No 258
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.51 E-value=0.00021 Score=71.00 Aligned_cols=122 Identities=20% Similarity=0.220 Sum_probs=63.3
Q ss_pred hhhhhcccCCc--EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHH
Q 017797 113 DMVYDLLHYGK--SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHK 190 (365)
Q Consensus 113 ~~l~~~l~~g~--~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r 190 (365)
..+...+..|. .++|.||+|+||||++++|+..... ....+.... .....+. ....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~----~f~~l~a~~-------~~~~~ir-----------~~~~ 96 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA----DVERISAVT-------SGVKEIR-----------EAIE 96 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC----EEEEEETTT-------CCHHHHH-----------HHHH
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC----CeEEEEecc-------CCHHHHH-----------HHHH
Confidence 45555666665 5999999999999999999998743 233222110 0000000 0000
Q ss_pred HHHHHHHhhCCCEEEEcCCCcH--HHHHHHHHHHHcC-cEEEEEEcCcchhHHhhhHHHHHHHcCcEEEEecCH
Q 017797 191 VMIEAVENHMPEVIIVDEIGTE--AEAHACRSIAERG-VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 261 (365)
Q Consensus 191 ~~la~al~~~P~vlilDEp~~~--~d~~~i~~~~~~G-~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~~g~~ 261 (365)
.+.......++.+|++||+-.- ...+.+....+.| +++|+++..... ..+. ..++.+..++....+
T Consensus 97 ~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~-~~l~----~aL~sR~~v~~l~~l 165 (447)
T 3pvs_A 97 RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPS-FELN----SALLSRARVYLLKSL 165 (447)
T ss_dssp HHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGG-GSSC----HHHHTTEEEEECCCC
T ss_pred HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcc-cccC----HHHhCceeEEeeCCc
Confidence 0111112457899999999552 2234455555555 555655533221 1111 125556666655433
No 259
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.50 E-value=9.4e-05 Score=62.88 Aligned_cols=27 Identities=30% Similarity=0.612 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
+..++|.||+|+||||+++.++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 568899999999999999999988754
No 260
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.49 E-value=4.9e-05 Score=67.65 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
+..++|+||+||||||+++.|++.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999763
No 261
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.48 E-value=0.00026 Score=58.86 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=25.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
...+..++|.||+|+|||++.++|......
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 456778999999999999999999987644
No 262
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.48 E-value=0.00047 Score=69.27 Aligned_cols=71 Identities=28% Similarity=0.479 Sum_probs=45.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhh
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 199 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~ 199 (365)
.....++|.||+|+|||+++++|+... +..++.++-. ++ +....+ ......+..+..|...
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~vn~~-~l------~~~~~g--------~~~~~~~~~f~~A~~~ 296 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGP-EI------MSKLAG--------ESESNLRKAFEEAEKN 296 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC----SSEEEEEEHH-HH------HTSCTT--------HHHHHHHHHHHHHHHT
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh----CCCEEEEEch-Hh------hhhhcc--------hhHHHHHHHHHHHHhc
Confidence 344679999999999999999998865 2344444321 11 000000 0112234566777788
Q ss_pred CCCEEEEcCC
Q 017797 200 MPEVIIVDEI 209 (365)
Q Consensus 200 ~P~vlilDEp 209 (365)
.|.+|++||+
T Consensus 297 ~p~iLfLDEI 306 (489)
T 3hu3_A 297 APAIIFIDEL 306 (489)
T ss_dssp CSEEEEEESH
T ss_pred CCcEEEecch
Confidence 8999999998
No 263
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.47 E-value=0.00034 Score=80.36 Aligned_cols=113 Identities=17% Similarity=0.212 Sum_probs=66.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCC----CCCchhhhhhhhhccCCCcchhHHH-HH
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----GDIPHSAIGTARRMQVPEPSLQHKV-MI 193 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~----~~~~~~~~~~~~~~~~~S~g~~~r~-~l 193 (365)
+++|++++|.||||+|||||...++-..... +.++.|++-...+... .+++-..+ .+.....+++... .-
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~-G~~v~Fi~~e~~~~~l~a~~~G~dl~~l----~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIYARKLGVDIDNL----LCSQPDTGEQALEICD 1498 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHHHHHTTCCTTTC----EEECCSSHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEEcccccCHHHHHHcCCCchhc----eeecCChHHHHHHHHH
Confidence 6689999999999999999999987765443 6788888755432110 00000000 0111122333222 22
Q ss_pred HHHHhhCCCEEEEcCCCc-----H-----------HH----H----HHHHHHHHcCcEEEEEEcCcc
Q 017797 194 EAVENHMPEVIIVDEIGT-----E-----------AE----A----HACRSIAERGVMLIGTAHGEW 236 (365)
Q Consensus 194 a~al~~~P~vlilDEp~~-----~-----------~d----~----~~i~~~~~~G~tVi~t~H~~~ 236 (365)
..+....|++|++||... . +. . ++...+.++|++||+|....+
T Consensus 1499 ~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~~~ 1565 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 1565 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECEEE
T ss_pred HHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEccccc
Confidence 234457899999999942 0 01 1 122334577999999886543
No 264
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.47 E-value=0.00033 Score=79.51 Aligned_cols=113 Identities=20% Similarity=0.271 Sum_probs=66.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccC----CCCCchhhhhhhhhccCCCcchhHHHHHH
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG----DGDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~----~~~~~~~~~~~~~~~~~~S~g~~~r~~la 194 (365)
+++|++++|.||||+|||||+..++...... +.++.|+........ ..++....+. -.+ .+........+.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~-g~~VlyiS~Ees~~ql~A~~lGvd~~~L~---i~~-~~~leei~~~l~ 803 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIYARKLGVDIDNLL---CSQ-PDTGEQALEICD 803 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHHHHHHTTCCGGGCE---EEC-CSSHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHc-CCCeEEEeccchHHHHHHHHcCCChhheE---Eec-CCcHHHHHHHHH
Confidence 6789999999999999999999999887654 567888764332210 0011110000 001 111222221121
Q ss_pred H-HHhhCCCEEEEcCCCcHH----------------HH----HHHHH----HHHcCcEEEEEEcCcc
Q 017797 195 A-VENHMPEVIIVDEIGTEA----------------EA----HACRS----IAERGVMLIGTAHGEW 236 (365)
Q Consensus 195 ~-al~~~P~vlilDEp~~~~----------------d~----~~i~~----~~~~G~tVi~t~H~~~ 236 (365)
+ ....+|++||+|++.... .. ..++. +.+.|++||+++|-..
T Consensus 804 ~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r 870 (1706)
T 3cmw_A 804 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 870 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEE
T ss_pred HHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 1 224689999999996521 11 12333 3567999999999543
No 265
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.46 E-value=0.00047 Score=68.33 Aligned_cols=117 Identities=19% Similarity=0.147 Sum_probs=69.8
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc---cc-----CCCCCchhhhhhhhhccCC
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE---IG-----GDGDIPHSAIGTARRMQVP 183 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~e---i~-----~~~~~~~~~~~~~~~~~~~ 183 (365)
++.+..-+++|+++.|.|+||+||||++..++.......+..+.++.-... +. ...+++...+ +.+.+
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l----~~g~l 265 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRV----RLGQL 265 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTC----CGGGC
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHH----hCCCC
Confidence 444444478899999999999999999999998775433566777643211 10 0011111111 11234
Q ss_pred CcchhHHHHHHHHHhhCCCEEEEcCCCcH-HHH-HHHHHHH-HcCcEEEEEE
Q 017797 184 EPSLQHKVMIEAVENHMPEVIIVDEIGTE-AEA-HACRSIA-ERGVMLIGTA 232 (365)
Q Consensus 184 S~g~~~r~~la~al~~~P~vlilDEp~~~-~d~-~~i~~~~-~~G~tVi~t~ 232 (365)
+.....++.-+........+.+.|+|... .++ ..++.+. +.|..+|++=
T Consensus 266 ~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 266 TDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIID 317 (444)
T ss_dssp CHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 55666666666655667778888887543 232 3444454 4577666654
No 266
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.46 E-value=5.7e-05 Score=66.40 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 017797 124 SILFVGRPGVGKTTVMREIAR 144 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~g 144 (365)
+++|+|||||||||+.+.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 267
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.45 E-value=5.9e-05 Score=66.43 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=26.2
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 118 LLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.+.+|.+++|+||+||||||+.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356789999999999999999999998774
No 268
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.44 E-value=0.00018 Score=65.78 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=31.0
Q ss_pred hcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 117 ~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
.....+..++|.||+|+|||+++++|....... +..+++++
T Consensus 24 ~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-~~~~~~v~ 64 (265)
T 2bjv_A 24 HLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-QGPFISLN 64 (265)
T ss_dssp HHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-TSCEEEEE
T ss_pred HHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-CCCeEEEe
Confidence 334556789999999999999999999887543 34455554
No 269
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.41 E-value=8e-05 Score=64.66 Aligned_cols=25 Identities=24% Similarity=0.589 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
.++|+|+||||||||++.+++...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 5899999999999999999998754
No 270
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.39 E-value=8.6e-05 Score=62.51 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++.+|+|||||||||++.+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998544
No 271
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.37 E-value=0.0011 Score=59.87 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=58.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC--CCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHH
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--SNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 197 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~--~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al 197 (365)
..|.+..++||-||||||.+--++.-..-. +.++.++-. ...+. .....+..+. .....+.+... .+..
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~-g~kvli~kp~~D~Ryg-~~i~sr~G~~-~~a~~i~~~~d----i~~~-- 87 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYS-SSFCTHDRNT-MEALPACLLRD----VAQE-- 87 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEEEETTCCCC-------------CEEEEESSGGG----GHHH--
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEeecCCccch-HHHHhhcCCe-eEEEecCCHHH----HHHH--
Confidence 358899999999999997654444333222 566665521 11111 1111111000 00011111111 1111
Q ss_pred hhCCCEEEEcCCCcHHH-HHHHHHHHHcCcEEEEEEcCcchh
Q 017797 198 NHMPEVIIVDEIGTEAE-AHACRSIAERGVMLIGTAHGEWLE 238 (365)
Q Consensus 198 ~~~P~vlilDEp~~~~d-~~~i~~~~~~G~tVi~t~H~~~~~ 238 (365)
..+.|+|++||.---.+ .+.+..+.+.|+.||++.++.++-
T Consensus 88 ~~~~dvViIDEaQF~~~v~el~~~l~~~gi~VI~~GL~~DF~ 129 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQ 129 (234)
T ss_dssp HTTCSEEEESSGGGCTTHHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred hccCCEEEEEchhhhhhHHHHHHHHHhCCCEEEEEecccccc
Confidence 26789999999943223 355666678899999999996543
No 272
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.37 E-value=0.0005 Score=78.05 Aligned_cols=112 Identities=20% Similarity=0.215 Sum_probs=66.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCC----CCCchhhhhhhhhccCCCcchhHHHHHH
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----GDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~----~~~~~~~~~~~~~~~~~S~g~~~r~~la 194 (365)
+++|.++.|.||||+|||||+..++...... +..+.|++........ .++....+. -.+. +...+.. .+.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~-G~~vlyis~E~s~~~~~a~~lGvd~~~L~---i~~~-~~~e~~l-~~l 453 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIYARKLGVDIDNLL---CSQP-DTGEQAL-EIC 453 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHHHHHHTTCCGGGCE---EECC-SSHHHHH-HHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchHHHHHHHcCCCHHHeE---EcCC-CCHHHHH-HHH
Confidence 5589999999999999999998887766543 6788888654332110 011111110 0111 1222222 222
Q ss_pred H--HHhhCCCEEEEcCCCcHH----------------HH----HHHHHH----HHcCcEEEEEEcCcc
Q 017797 195 A--VENHMPEVIIVDEIGTEA----------------EA----HACRSI----AERGVMLIGTAHGEW 236 (365)
Q Consensus 195 ~--al~~~P~vlilDEp~~~~----------------d~----~~i~~~----~~~G~tVi~t~H~~~ 236 (365)
. +...+|+++++|.++.-. .. ..++.+ .+.|++||+++|-..
T Consensus 454 ~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~ 521 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 521 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEE
T ss_pred HHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 2 335689999999986521 11 233333 567999999998643
No 273
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.35 E-value=9.3e-05 Score=64.82 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 017797 124 SILFVGRPGVGKTTVMREIAR 144 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~g 144 (365)
.++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 274
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.35 E-value=0.00011 Score=63.59 Aligned_cols=31 Identities=35% Similarity=0.390 Sum_probs=25.6
Q ss_pred hhhcccCCcEEEEEcCCCCcHHHHHHHHHhc
Q 017797 115 VYDLLHYGKSILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 115 l~~~l~~g~~v~iiGpnGsGKTTllr~l~gl 145 (365)
+++...++..++|+|++||||||+.+.|+..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4555667889999999999999999999986
No 275
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.33 E-value=0.0012 Score=63.07 Aligned_cols=28 Identities=36% Similarity=0.735 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
++..++|.||+|+||||+++.++..+..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3468999999999999999999998864
No 276
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.33 E-value=0.00033 Score=63.04 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=24.4
Q ss_pred hhhcccCCcEEEEEcCCCCcHHHHHHHHHh
Q 017797 115 VYDLLHYGKSILFVGRPGVGKTTVMREIAR 144 (365)
Q Consensus 115 l~~~l~~g~~v~iiGpnGsGKTTllr~l~g 144 (365)
+-..+..|+.+++.|||||||||++..++.
T Consensus 69 ~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 69 ILEAISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 334466799999999999999998877654
No 277
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.32 E-value=0.00051 Score=65.49 Aligned_cols=37 Identities=35% Similarity=0.567 Sum_probs=28.9
Q ss_pred chhhhhcccCCc---EEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 112 IDMVYDLLHYGK---SILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 112 ~~~l~~~l~~g~---~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
...+...+..|. .++|.||+|+||||+++.++..+..
T Consensus 25 ~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp HHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 444555555554 5899999999999999999988754
No 278
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.32 E-value=0.00013 Score=72.55 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=44.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHH---H
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV---E 197 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~a---l 197 (365)
++..++|.||||+||||+.++++..+... ..+..+....-+ ....+ ...+.+-.+..| .
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~--~~~~~~~~~~~~-------~~~~~---------~~~~~~~~f~~a~~~~ 123 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSK--VPFCPMVGSEVY-------STEIK---------KTEVLMENFRRAIGLR 123 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTT--SCEEEEEGGGGC-------CSSSC---------HHHHHHHHHHHTEEEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCC--ceEEEEeHHHHH-------HHhhh---------hhHHHHHHHHHHHhhh
Confidence 45689999999999999999999988642 334433321111 00000 111223344444 4
Q ss_pred hhCCCEEEEcCCCc
Q 017797 198 NHMPEVIIVDEIGT 211 (365)
Q Consensus 198 ~~~P~vlilDEp~~ 211 (365)
...|.+|++||..+
T Consensus 124 ~~~~~il~iDEid~ 137 (456)
T 2c9o_A 124 IKETKEVYEGEVTE 137 (456)
T ss_dssp EEEEEEEEEEEEEE
T ss_pred hcCCcEEEEechhh
Confidence 56799999999943
No 279
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.31 E-value=0.0001 Score=64.15 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 017797 124 SILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.++|+|+||||||||++.++|...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 479999999999999999999853
No 280
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.30 E-value=0.00015 Score=62.78 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEE
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i 157 (365)
..++|+||+|||||||++.|++.+.+. +.++.++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~-g~~v~~i 40 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR-GIRPGLI 40 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc-CCceeEE
Confidence 578999999999999999999987654 4455544
No 281
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.30 E-value=0.00031 Score=58.28 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=23.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
...+..++|.||+|+|||++.++|....
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred hCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3456789999999999999999987754
No 282
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.29 E-value=0.00073 Score=63.46 Aligned_cols=118 Identities=22% Similarity=0.301 Sum_probs=65.3
Q ss_pred chhhhhcccCC---cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchh
Q 017797 112 IDMVYDLLHYG---KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQ 188 (365)
Q Consensus 112 ~~~l~~~l~~g---~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~ 188 (365)
...+...+..| ..+++.||+|+||||++++++..+. ..+..++.... ....+
T Consensus 35 ~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~----~~~~~i~~~~~-------~~~~i-------------- 89 (324)
T 3u61_B 35 KETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN----ADMMFVNGSDC-------KIDFV-------------- 89 (324)
T ss_dssp HHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT----EEEEEEETTTC-------CHHHH--------------
T ss_pred HHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC----CCEEEEccccc-------CHHHH--------------
Confidence 34444555554 3678888899999999999998774 34454442110 00000
Q ss_pred HHHHHHHHH-----hhCCCEEEEcCCCcH---HHHHHHHHHHH---cCcEEEEEEcCcchhHHhhhHHHHHHHcCcEEEE
Q 017797 189 HKVMIEAVE-----NHMPEVIIVDEIGTE---AEAHACRSIAE---RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 257 (365)
Q Consensus 189 ~r~~la~al-----~~~P~vlilDEp~~~---~d~~~i~~~~~---~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g~iv~ 257 (365)
+-.+.... ..++.+|++||+-.- ...+.+..+.+ .++.+|+++.... .+..++ ..+..++.
T Consensus 90 -~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~---~l~~~l----~sR~~~i~ 161 (324)
T 3u61_B 90 -RGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID---GIIKPL----QSRCRVIT 161 (324)
T ss_dssp -HTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG---GSCTTH----HHHSEEEE
T ss_pred -HHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc---ccCHHH----HhhCcEEE
Confidence 00011111 127899999999653 23445554433 3567788887654 122222 33345666
Q ss_pred ecCHH
Q 017797 258 LGDEE 262 (365)
Q Consensus 258 ~g~~~ 262 (365)
...|.
T Consensus 162 ~~~~~ 166 (324)
T 3u61_B 162 FGQPT 166 (324)
T ss_dssp CCCCC
T ss_pred eCCCC
Confidence 65544
No 283
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.28 E-value=9.8e-05 Score=69.23 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccC
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDE 149 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~ 149 (365)
++.+++|+||+|||||||++.|.+++.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 46799999999999999999999999763
No 284
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.27 E-value=0.00051 Score=63.93 Aligned_cols=36 Identities=33% Similarity=0.565 Sum_probs=27.7
Q ss_pred chhhhhcccCCc--EEEEEcCCCCcHHHHHHHHHhccc
Q 017797 112 IDMVYDLLHYGK--SILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 112 ~~~l~~~l~~g~--~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.+.+...+..|. .++|.||+|+||||+++.++..+.
T Consensus 30 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 30 IDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp HHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 444555555543 499999999999999999998764
No 285
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.27 E-value=0.00011 Score=63.28 Aligned_cols=27 Identities=37% Similarity=0.756 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998754
No 286
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.27 E-value=9.1e-05 Score=78.99 Aligned_cols=73 Identities=23% Similarity=0.401 Sum_probs=47.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHh
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~ 198 (365)
+.++..++|.||||+||||++++|++.+... ++.+.. .++ ....+ .......+..+..+..
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~~~~----~i~v~~-~~l------~~~~~--------g~~~~~i~~~f~~a~~ 568 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKG-PEL------LTMWF--------GESEANVREIFDKARQ 568 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC----CCCCCC-SSS------TTCCT--------TTSSHHHHHHHHHHHH
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHhCCC----EEEEec-hHh------hhhhc--------CccHHHHHHHHHHHHh
Confidence 4567889999999999999999999988532 111111 111 11001 1111233445667778
Q ss_pred hCCCEEEEcCCC
Q 017797 199 HMPEVIIVDEIG 210 (365)
Q Consensus 199 ~~P~vlilDEp~ 210 (365)
..|.+|++||+-
T Consensus 569 ~~p~vl~iDEid 580 (806)
T 1ypw_A 569 AAPCVLFFDELD 580 (806)
T ss_dssp HCSBCCCCSSHH
T ss_pred cCCeEEEEEChh
Confidence 889999999973
No 287
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.25 E-value=0.00031 Score=70.19 Aligned_cols=119 Identities=18% Similarity=0.287 Sum_probs=60.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCC------CCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHH
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEF------QKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~------~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la 194 (365)
....++|+||||+||||+++.|+..+.... +..+..++-. .. ..+.. ..+.+-.+.
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----------~~------~~g~~--e~~~~~~~~ 261 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----------TK------YRGEF--EDRLKKVMD 261 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------------CTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------cc------ccchH--HHHHHHHHH
Confidence 345789999999999999999999874321 1222222111 00 00000 012233444
Q ss_pred HHHhhCCCEEEEcCCCcHHHHHHHHHHHHcC-cEEEEEEcCcchhHHh-hhHHHHHHHcCcEEEEecCHH
Q 017797 195 AVENHMPEVIIVDEIGTEAEAHACRSIAERG-VMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEE 262 (365)
Q Consensus 195 ~al~~~P~vlilDEp~~~~d~~~i~~~~~~G-~tVi~t~H~~~~~~~~-~d~i~~~ll~~g~iv~~g~~~ 262 (365)
.+....|-+|++| .+..-...+..+.+.| ..+|+++........+ .++. +..+...+....|.
T Consensus 262 ~~~~~~~~iLfiD--~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~a---l~~Rf~~i~v~~p~ 326 (468)
T 3pxg_A 262 EIRQAGNIILFID--AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAA---LERRFQPIQVDQPS 326 (468)
T ss_dssp HHHTCCCCEEEEC--C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSH---HHHSEEEEECCCCC
T ss_pred HHHhcCCeEEEEe--CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHH---HHHhCccceeCCCC
Confidence 5555678999999 3222223444444555 6777777655432222 2333 33455566666664
No 288
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.23 E-value=0.0019 Score=57.89 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 5899999999999999999997653
No 289
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.22 E-value=0.0007 Score=72.57 Aligned_cols=35 Identities=37% Similarity=0.661 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
..++|+||+|+||||++++|+..+... +..++.++
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~-~~~~i~i~ 623 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRID 623 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSS-GGGEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC-CCcEEEEe
Confidence 479999999999999999999988653 34556554
No 290
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.22 E-value=0.00015 Score=61.29 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 017797 124 SILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
+++|+||+||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 291
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.21 E-value=0.00018 Score=61.33 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
+.++.|+|++||||||+.+.|+..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998774
No 292
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.21 E-value=0.00014 Score=70.05 Aligned_cols=37 Identities=22% Similarity=0.626 Sum_probs=32.3
Q ss_pred chhhhhcccCCcE--EEEEcCCCCcHHHHHHHHHhcccc
Q 017797 112 IDMVYDLLHYGKS--ILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 112 ~~~l~~~l~~g~~--v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
++.++..+++|+. ++|+||+||||||+.++|++.+..
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 5677778888876 999999999999999999998753
No 293
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.20 E-value=0.00013 Score=63.93 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 294
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.20 E-value=0.00049 Score=64.16 Aligned_cols=36 Identities=39% Similarity=0.624 Sum_probs=28.2
Q ss_pred chhhhhcccCCc--EEEEEcCCCCcHHHHHHHHHhccc
Q 017797 112 IDMVYDLLHYGK--SILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 112 ~~~l~~~l~~g~--~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.+.+...+..|. .++|.||+|+||||+++.++..+.
T Consensus 34 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 34 VKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 444555555553 699999999999999999998874
No 295
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.19 E-value=0.00088 Score=60.91 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.|.|.-
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999865
No 296
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.19 E-value=0.0017 Score=61.32 Aligned_cols=25 Identities=44% Similarity=0.648 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
..++|.||+|+||||+++.++....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988753
No 297
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.19 E-value=0.00019 Score=70.83 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=33.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~ 159 (365)
++++++++||+||||||++..|++.+.+. +++|..++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeec
Confidence 78899999999999999999999999876 678887765
No 298
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.18 E-value=0.0019 Score=64.02 Aligned_cols=116 Identities=17% Similarity=0.144 Sum_probs=69.2
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC--Cc-ccC-----CCCCchhhhhhhhhccC-
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS--NE-IGG-----DGDIPHSAIGTARRMQV- 182 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~--~e-i~~-----~~~~~~~~~~~~~~~~~- 182 (365)
++.+..-+.+|++++|.|+||+||||++..++...... +.++.++.-. .+ +.. ..+++...+ +.+.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlEms~~ql~~R~~~~~~~i~~~~l----~~g~~ 261 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKENIKRLIVTAGSINAQKI----KAARR 261 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSSSCTTHHHHHHHHHHSCCCHHHH----HHTGG
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECCCCHHHHHHHHHHHHcCCCHHHH----hcccC
Confidence 44443347889999999999999999998888776544 6678777432 11 100 011221111 1112
Q ss_pred -CCcchhHHHHHHHHHhhCCCEEEEcCCCcH-HHH-HHHHHHH-HcCcE--EEEEE
Q 017797 183 -PEPSLQHKVMIEAVENHMPEVIIVDEIGTE-AEA-HACRSIA-ERGVM--LIGTA 232 (365)
Q Consensus 183 -~S~g~~~r~~la~al~~~P~vlilDEp~~~-~d~-~~i~~~~-~~G~t--Vi~t~ 232 (365)
++.....++.-+.....+.++.+.|+|... .++ ..++.+. +.|.. +|++=
T Consensus 262 ~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID 317 (444)
T 3bgw_A 262 DFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMID 317 (444)
T ss_dssp GTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 455666666666666667789888988543 222 3344443 34666 66654
No 299
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.18 E-value=0.00015 Score=70.44 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=40.9
Q ss_pred eeeEEEEECCcccCcch--------------hhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 97 IVGLTCRVGRAVSGHID--------------MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 97 i~~l~~r~~~~~~~~~~--------------~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
+++++..|..... .++ ++.+.+.+|+.++|+||+|+|||||++.|++.++.
T Consensus 136 Fe~ltp~yP~er~-~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 136 FENLTPLHANSRL-RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp TTTSCEESCCSBC-CCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred eccccccCCCCcc-ccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 4567777765432 244 56677889999999999999999999999999864
No 300
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.16 E-value=0.0016 Score=60.78 Aligned_cols=26 Identities=42% Similarity=0.658 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
...++|.||+|+||||+++.++....
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988663
No 301
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.16 E-value=0.0012 Score=69.75 Aligned_cols=91 Identities=25% Similarity=0.368 Sum_probs=53.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCCCE
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 203 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P~v 203 (365)
.++|.||+|+|||++.++|+..+... +..++.++-. ++. .. ...++|... .++....+.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~-~~~~i~i~~s-~~~------~~--------~~~~~~~l~----~~~~~~~~~v 582 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGD-EESMIRIDMS-EYM------EK--------HSTSGGQLT----EKVRRKPYSV 582 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSC-TTCEEEEEGG-GGC------SS--------CCCC---CH----HHHHHCSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC-CcceEEEech-hcc------cc--------cccccchhh----HHHHhCCCeE
Confidence 69999999999999999999988433 4455555421 111 00 001122111 1222345689
Q ss_pred EEEcCCCc--HHHHHHHHHHHHcC--------------cEEEEEEcC
Q 017797 204 IIVDEIGT--EAEAHACRSIAERG--------------VMLIGTAHG 234 (365)
Q Consensus 204 lilDEp~~--~~d~~~i~~~~~~G--------------~tVi~t~H~ 234 (365)
|++||+.. ..-...+.++.+.| +.+|+|++.
T Consensus 583 l~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 583 VLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred EEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 99999954 22234555555543 367888874
No 302
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.15 E-value=0.0011 Score=76.27 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=67.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCC----CCCchhhhhhhhhccCCCcchhHHHHHH
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----GDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~----~~~~~~~~~~~~~~~~~S~g~~~r~~la 194 (365)
+++|.++.|.||||+|||||+..++...... +..+.|++........ .++....+. -.+. .... +-..++
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~-G~~vlyis~E~s~~~~~a~~lGvd~~~L~---I~~~-~~~e-~il~~~ 453 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIYARKLGVDIDNLL---CSQP-DTGE-QALEIC 453 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHHHHHTTCCTTTCE---EECC-SSHH-HHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCHHHHHHHHcCCCHHHeE---EeCC-CCHH-HHHHHH
Confidence 6789999999999999999999888776543 5678888754432100 011100000 0011 1122 222333
Q ss_pred HHH--hhCCCEEEEcCCCcHH----------------H----HHHHHHH----HHcCcEEEEEEcCcch
Q 017797 195 AVE--NHMPEVIIVDEIGTEA----------------E----AHACRSI----AERGVMLIGTAHGEWL 237 (365)
Q Consensus 195 ~al--~~~P~vlilDEp~~~~----------------d----~~~i~~~----~~~G~tVi~t~H~~~~ 237 (365)
+.+ ..+|++||+|.+..-. . ...++.+ .+.|++||+++|-...
T Consensus 454 ~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~ 522 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 522 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEEC
T ss_pred HHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 322 4689999999985411 1 1233443 4679999999997543
No 303
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.14 E-value=0.00078 Score=69.02 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEE
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i 157 (365)
.+++++|.||||+||||+++.|+..+... +.+|.+.
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~-g~~Vl~~ 238 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESL-GLEVGLC 238 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEe
Confidence 46799999999999999999999988654 5566554
No 304
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.13 E-value=0.0017 Score=62.54 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
....++|.||+|+||||++++|+..+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999977
No 305
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.13 E-value=0.0008 Score=63.24 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=25.9
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 118 ~l~~g~~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
....+..++|.||+|+|||+++++|......
T Consensus 21 ~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~ 51 (304)
T 1ojl_A 21 VAPSDATVLIHGDSGTGKELVARALHACSAR 51 (304)
T ss_dssp HCSTTSCEEEESCTTSCHHHHHHHHHHHSSC
T ss_pred HhCCCCcEEEECCCCchHHHHHHHHHHhCcc
Confidence 3455678999999999999999999987643
No 306
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.13 E-value=0.00029 Score=60.75 Aligned_cols=35 Identities=31% Similarity=0.256 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
.+++|+|++||||||++..|+..+... +.++.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~-g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE-GWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc-CCeeeEEE
Confidence 378999999999999999999988754 55666654
No 307
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.12 E-value=0.00031 Score=68.21 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=34.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI 163 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei 163 (365)
.+..++|+|||||||||+++.|+...... +.++.++|...++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-GSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-CCEEEEEeCCcCH
Confidence 56789999999999999999999988654 6677777755543
No 308
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.12 E-value=0.00023 Score=61.38 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998865
No 309
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.11 E-value=0.00042 Score=68.58 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=31.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~ 160 (365)
.+++|+|++|+||||++..|++.+... +.++.+++..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~-G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR-GLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH-HCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecc
Confidence 589999999999999999999998755 6778887653
No 310
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.09 E-value=0.00025 Score=60.96 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
|.++.|.||+||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999998765
No 311
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.08 E-value=0.00042 Score=60.53 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
+|.+++|.|++||||||+.+.|+..+... + .+....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~-g-~~~~~~ 38 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELK-R-DVYLTE 38 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTT-S-CEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhc-C-CEEEec
Confidence 46789999999999999999999987653 3 444433
No 312
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.06 E-value=0.00028 Score=59.31 Aligned_cols=19 Identities=37% Similarity=0.691 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 017797 124 SILFVGRPGVGKTTVMREI 142 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l 142 (365)
+++|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 313
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.05 E-value=0.0021 Score=64.56 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=35.1
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
++.+..-+.+|++++|.|+||+|||||+..++-......+.++.|+.
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 44443347889999999999999999998887766443255677764
No 314
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.04 E-value=0.0013 Score=66.27 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~ 159 (365)
...++|.||+|+||||++++++..+ +..++.++.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l----~~~~i~in~ 110 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL----GYDILEQNA 110 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT----TCEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc----CCCEEEEeC
Confidence 4689999999999999999999977 345665543
No 315
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.04 E-value=0.00031 Score=59.80 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
+|..++|+|+||+|||||++.+++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46679999999999999999999864
No 316
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.03 E-value=0.0003 Score=62.25 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
++.+|+|||||||||++.+|.-.+.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999975553
No 317
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.02 E-value=0.0004 Score=60.46 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
+|.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999877
No 318
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.01 E-value=0.0014 Score=69.15 Aligned_cols=31 Identities=39% Similarity=0.648 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
.++|.||+|+|||++.++|+..+. ..++.++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~----~~~~~i~ 520 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALG----IELLRFD 520 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT----CEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc----CCEEEEe
Confidence 799999999999999999999873 3455554
No 319
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.01 E-value=0.00047 Score=59.16 Aligned_cols=34 Identities=29% Similarity=0.552 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
++.|.|++||||||+.+.|+..++.. +..+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ-GINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CceEEEEE
Confidence 68999999999999999999987643 44455553
No 320
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.00 E-value=0.0012 Score=65.49 Aligned_cols=112 Identities=16% Similarity=0.092 Sum_probs=52.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhcc---CCCcchhHHHHHHHHHhhC
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQ---VPEPSLQHKVMIEAVENHM 200 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~---~~S~g~~~r~~la~al~~~ 200 (365)
.++|+|++|+|||||++.|+|--........++-.+...... ......+....-.+ ..+..+.+....+.....+
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~--~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA--EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEEC--TTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEE--EECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 699999999999999999988532110000000000000000 00000000000000 0011144444455555567
Q ss_pred CCEEEEcCC----CcHHHHHHHHHHHHcCcEEEEEEcCcch
Q 017797 201 PEVIIVDEI----GTEAEAHACRSIAERGVMLIGTAHGEWL 237 (365)
Q Consensus 201 P~vlilDEp----~~~~d~~~i~~~~~~G~tVi~t~H~~~~ 237 (365)
+|++|+... ....|.+....+.+.+..++++.+-.+.
T Consensus 103 ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~ 143 (456)
T 4dcu_A 103 ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDN 143 (456)
T ss_dssp CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC--
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccc
Confidence 777666433 2345666666666778888777765553
No 321
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.00 E-value=0.00036 Score=59.29 Aligned_cols=22 Identities=50% Similarity=0.702 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHh
Q 017797 123 KSILFVGRPGVGKTTVMREIAR 144 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~g 144 (365)
.+++|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 322
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.00 E-value=0.0016 Score=69.70 Aligned_cols=100 Identities=25% Similarity=0.410 Sum_probs=51.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccC------CCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHH
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDE------FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEA 195 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~------~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~ 195 (365)
...++|+||||+||||+++.++..+... .+..+.+++...-.... . ..+ ....+.+..+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~---~--~~g--------~~~~~l~~~~~~ 257 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGA---K--YRG--------EFEERLKAVIQE 257 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------------CHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccC---c--cch--------HHHHHHHHHHHH
Confidence 3478999999999999999999987442 14556665532211100 0 000 001111222333
Q ss_pred HHhh-CCCEEEEcCCCcH---------HH-HHHHHHHHHcC-cEEEEEEcC
Q 017797 196 VENH-MPEVIIVDEIGTE---------AE-AHACRSIAERG-VMLIGTAHG 234 (365)
Q Consensus 196 al~~-~P~vlilDEp~~~---------~d-~~~i~~~~~~G-~tVi~t~H~ 234 (365)
+... .|.+|++||.-.- .+ .+.++.+.+.| ..+|+++..
T Consensus 258 ~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~ 308 (854)
T 1qvr_A 258 VVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTL 308 (854)
T ss_dssp HHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECH
T ss_pred HHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCc
Confidence 3333 5789999999542 12 23456665655 566666643
No 323
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.00075 Score=64.05 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
++..+.|.||||+|||++++.++..+..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999998853
No 324
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.98 E-value=0.0003 Score=60.05 Aligned_cols=24 Identities=42% Similarity=0.729 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 017797 124 SILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.+.|+|||||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 325
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.98 E-value=0.00035 Score=59.90 Aligned_cols=27 Identities=44% Similarity=0.608 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
..+.+++|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998765
No 326
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.97 E-value=0.00036 Score=60.59 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 017797 124 SILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999999764
No 327
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.97 E-value=0.00039 Score=60.07 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=24.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
+.++.+++|+|++||||||+.+.|+..+
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998765
No 328
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.96 E-value=0.0004 Score=62.52 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=24.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4567899999999999999999999855
No 329
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.96 E-value=0.00036 Score=63.86 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 017797 124 SILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
+++|+|||||||||+.+.|++.++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999998664
No 330
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.95 E-value=0.00041 Score=59.57 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
+.++.|+||+||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998663
No 331
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.95 E-value=0.00025 Score=64.69 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=24.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
..+.+++|+|||||||||+.+.|+..+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3467899999999999999999999775
No 332
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.94 E-value=0.00018 Score=63.17 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
+++|.|++||||||+++.|+..+... +..+.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~-g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA-GRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 68999999999999999999988653 34454443
No 333
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.92 E-value=0.00065 Score=58.67 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~ 159 (365)
+++|.|++||||||+.+.|+..+... +..+....+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~-g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR-GKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC-CC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEeeC
Confidence 58999999999999999999987543 444544433
No 334
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.91 E-value=0.00036 Score=60.39 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=25.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
+..+.+++|+|++||||||+.+.|+..+.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45577999999999999999999998764
No 335
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.90 E-value=0.0007 Score=59.33 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=25.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
.+|.+++|+|++||||||+.+.|+..+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999987754
No 336
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.90 E-value=0.00047 Score=60.38 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=25.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
.+|.+++|+|++||||||+.+.|+..+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999987653
No 337
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.88 E-value=0.00048 Score=59.19 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998765
No 338
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.86 E-value=0.0062 Score=57.72 Aligned_cols=36 Identities=19% Similarity=0.425 Sum_probs=28.2
Q ss_pred hhhhhcccCCc---EEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 113 DMVYDLLHYGK---SILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 113 ~~l~~~l~~g~---~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
+.+...+..|. .++|.||+|+||||+.+.++..+..
T Consensus 12 ~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 12 EKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp HHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 34444555554 5999999999999999999997754
No 339
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.85 E-value=0.002 Score=62.06 Aligned_cols=28 Identities=29% Similarity=0.616 Sum_probs=23.5
Q ss_pred CCcEEEE--EcCCCCcHHHHHHHHHhcccc
Q 017797 121 YGKSILF--VGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 121 ~g~~v~i--iGpnGsGKTTllr~l~gll~~ 148 (365)
.+..++| .||+|+|||||++.++..+..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 3557778 899999999999999987653
No 340
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.83 E-value=0.00062 Score=60.21 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHh
Q 017797 122 GKSILFVGRPGVGKTTVMREIAR 144 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~g 144 (365)
+.+++|+|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 341
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.82 E-value=0.00046 Score=64.80 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
+..++|+|+||+|||||++.|+|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4589999999999999999999974
No 342
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.82 E-value=0.00047 Score=58.90 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=19.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
++.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999987654
No 343
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.80 E-value=0.00089 Score=57.50 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
+++|+|++||||||+.+.|+..+... +..++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~-g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQK-GYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 58999999999999999999877532 33444444
No 344
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.79 E-value=0.00062 Score=58.09 Aligned_cols=22 Identities=32% Similarity=0.693 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 017797 124 SILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gl 145 (365)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 345
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.78 E-value=0.0007 Score=60.02 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
++..++|+|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999988663
No 346
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.76 E-value=0.0012 Score=70.12 Aligned_cols=116 Identities=19% Similarity=0.340 Sum_probs=64.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHHHHHhhCC
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la~al~~~P 201 (365)
...+++.||||+|||.+.++++..... ..+.+..+ ++. . ..+......-+..+..|....|
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~----~f~~v~~~-~l~------s--------~~vGese~~vr~lF~~Ar~~~P 571 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQA----NFISIKGP-ELL------T--------MWFGESEANVREIFDKARQAAP 571 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTC----EEEECCHH-HHH------T--------TTCSSCHHHHHHHHHHHHTTCS
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCC----ceEEeccc-hhh------c--------cccchHHHHHHHHHHHHHHcCC
Confidence 346899999999999999999998643 33322211 110 0 0111222344557788888999
Q ss_pred CEEEEcCCCcH---------HH-------H-HHHHHHH----HcCcEEEEEEcCcchhHHhhhHHHHHHHcCc---EEEE
Q 017797 202 EVIIVDEIGTE---------AE-------A-HACRSIA----ERGVMLIGTAHGEWLENIIKNPILSDLIGGV---DTVT 257 (365)
Q Consensus 202 ~vlilDEp~~~---------~d-------~-~~i~~~~----~~G~tVi~t~H~~~~~~~~~d~i~~~ll~~g---~iv~ 257 (365)
.||++||+-+- .+ . +++.++- ..++.||.+|...+.. |+.+ +.-| +.+.
T Consensus 572 ~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l----D~Al---lRpgRfd~~i~ 644 (806)
T 3cf2_A 572 CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII----DPAI---LRPGRLDQLIY 644 (806)
T ss_dssp EEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS----CHHH---HSTTTSCCEEE
T ss_pred ceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC----CHhH---cCCCcceEEEE
Confidence 99999999541 01 1 1222331 2356788788766533 3433 3323 4677
Q ss_pred ecCHHH
Q 017797 258 LGDEEA 263 (365)
Q Consensus 258 ~g~~~~ 263 (365)
.+-|+.
T Consensus 645 v~lPd~ 650 (806)
T 3cf2_A 645 IPLPDE 650 (806)
T ss_dssp C-----
T ss_pred ECCcCH
Confidence 777754
No 347
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.75 E-value=0.00066 Score=61.55 Aligned_cols=26 Identities=35% Similarity=0.541 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.-+++|.||+||||||+.+.|+..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999997653
No 348
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.75 E-value=0.00074 Score=57.11 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
++++|+|++||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999988654
No 349
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.74 E-value=0.00031 Score=70.99 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=28.4
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
++.+++.+.+| +.+|+|+|||||||+|.+|..++
T Consensus 51 ~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp BSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred eeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 45566666777 99999999999999999997764
No 350
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.74 E-value=0.00063 Score=63.47 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
.+.+++|.|||||||||+.+.|+..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 351
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.73 E-value=0.00083 Score=58.60 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
+.+++|+|++||||||+.+.|+..+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998653
No 352
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.73 E-value=0.0093 Score=56.03 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=27.9
Q ss_pred chhhhhcccCCc--EEEEEcCCCCcHHHHHHHHHhc
Q 017797 112 IDMVYDLLHYGK--SILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 112 ~~~l~~~l~~g~--~v~iiGpnGsGKTTllr~l~gl 145 (365)
++.+...+..|. .+++.||+|+||||+.++++.-
T Consensus 6 ~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 6 LETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp HHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 556666676664 7999999999999999999863
No 353
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.73 E-value=0.00064 Score=58.26 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
-++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 354
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.71 E-value=0.00087 Score=59.78 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
++..++|+|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 355
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.69 E-value=0.00094 Score=57.92 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gl 145 (365)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999985
No 356
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.68 E-value=0.00089 Score=60.01 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=26.1
Q ss_pred hcccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 117 ~~l~~g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
..+.+..++.|+|||||||||..+.|+..+.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3456677999999999999999999998663
No 357
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.66 E-value=0.0019 Score=68.24 Aligned_cols=118 Identities=19% Similarity=0.329 Sum_probs=60.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCC------CCeEEEEcCCCcccCCCCCchhhhhhhhhccCCCcchhHHHHHH
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEF------QKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~------~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~~~r~~la 194 (365)
....++|+||||+||||+.+.|+..+.... +..+..++- + ....+. ...+.+-.+.
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------------g-~~~~G~--~e~~l~~~~~ 261 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------------G-TKYRGE--FEDRLKKVMD 261 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------------CTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------c-ccccch--HHHHHHHHHH
Confidence 345899999999999999999999874320 111211111 0 000000 0112233455
Q ss_pred HHHhhCCCEEEEcCCCcHHH-HHHHHHHHHcC-cEEEEEEcCcchhHHh-hhHHHHHHHcCcEEEEecCHH
Q 017797 195 AVENHMPEVIIVDEIGTEAE-AHACRSIAERG-VMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEE 262 (365)
Q Consensus 195 ~al~~~P~vlilDEp~~~~d-~~~i~~~~~~G-~tVi~t~H~~~~~~~~-~d~i~~~ll~~g~iv~~g~~~ 262 (365)
.+....|-+|++| ...| ...+..+.+.| ..+|+++........+ .++.+ ..+...+....|.
T Consensus 262 ~~~~~~~~iLfiD---~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al---~rRf~~i~v~~p~ 326 (758)
T 3pxi_A 262 EIRQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAAL---ERRFQPIQVDQPS 326 (758)
T ss_dssp HHHTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHH---HHSEEEEECCCCC
T ss_pred HHHhcCCEEEEEc---CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHH---HhhCcEEEeCCCC
Confidence 5566789999999 2223 23344444454 6777777655532221 23333 2344566665554
No 358
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.65 E-value=0.0008 Score=57.72 Aligned_cols=25 Identities=40% Similarity=0.725 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988654
No 359
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.64 E-value=0.0009 Score=58.28 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 017797 124 SILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
+++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998764
No 360
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.62 E-value=0.00095 Score=57.20 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll 146 (365)
.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 361
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.61 E-value=0.00085 Score=56.70 Aligned_cols=25 Identities=52% Similarity=0.761 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998653
No 362
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.61 E-value=0.001 Score=58.58 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 363
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.61 E-value=0.001 Score=58.65 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998755
No 364
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.60 E-value=0.0032 Score=66.32 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
.+..++|+||+|+||||+++.++..+..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999998743
No 365
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.58 E-value=0.00097 Score=59.19 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
+..+.|+||+||||||+.+.|+..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998664
No 366
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.57 E-value=0.0017 Score=57.87 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~ 159 (365)
+|.++.|.|++||||||+++.|+..+... +..+.+..+
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v~~~~~ 42 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRER-GIEVQLTRE 42 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEES
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcccccC
Confidence 57899999999999999999999988654 455555444
No 367
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.56 E-value=0.0033 Score=64.09 Aligned_cols=41 Identities=20% Similarity=0.371 Sum_probs=29.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccc----cCCCCeEEEEcCC
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLS----DEFQKRVVIVDTS 160 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~----~~~~~~i~~i~~~ 160 (365)
+.....++|.|.+|||||++++.|+.-+- |. .-+++.+|..
T Consensus 211 L~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~-ev~lilIDpK 255 (574)
T 2iut_A 211 LAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPS-EARLIMIDPK 255 (574)
T ss_dssp GGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTT-TEEEEEECSS
T ss_pred hhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCc-ceEEEEeCCC
Confidence 44456899999999999999998766432 22 3456666654
No 368
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.55 E-value=0.0012 Score=60.40 Aligned_cols=37 Identities=32% Similarity=0.582 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
++.++.|+|++||||||+.+.|+..+... +..+++++
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~-g~~~i~~~ 39 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKN-NIDVIVLG 39 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhC-CCEEEEEC
Confidence 35689999999999999999999876432 33444333
No 369
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.55 E-value=0.0011 Score=57.90 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 017797 124 SILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.+.|+||+|||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999987653
No 370
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.55 E-value=0.0012 Score=55.64 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 017797 124 SILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998653
No 371
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.54 E-value=0.0013 Score=57.32 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
..+++|+|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998754
No 372
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.50 E-value=0.0014 Score=58.08 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
+..++|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998866
No 373
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.47 E-value=0.0014 Score=60.28 Aligned_cols=24 Identities=33% Similarity=0.682 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 017797 124 SILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.++|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999998753
No 374
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.43 E-value=0.00097 Score=58.01 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=26.0
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHh
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIAR 144 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~g 144 (365)
++.+++..+.. .++|+|++|+|||||++.+.+
T Consensus 16 l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 16 LQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 56666665555 478999999999999999976
No 375
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.40 E-value=0.0018 Score=55.79 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=20.6
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhc
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gl 145 (365)
++.+++..+.. .++|+|++|+|||||++.+.+-
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 44444444444 6899999999999999999873
No 376
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.39 E-value=0.0017 Score=53.87 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 377
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.37 E-value=0.009 Score=58.35 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.+++|.||+|||||||...|+..++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999998764
No 378
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0017 Score=55.56 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|||||||++.+++..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999865
No 379
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.36 E-value=0.0018 Score=57.45 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 017797 124 SILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
++.|+|||||||+|..+.|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998664
No 380
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.36 E-value=0.0019 Score=58.47 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++-.++|+||+||||||+.+.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356689999999999999999998755
No 381
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.36 E-value=0.0017 Score=62.60 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHh
Q 017797 123 KSILFVGRPGVGKTTVMREIAR 144 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~g 144 (365)
++.+|+|||||||||++-+|.=
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
No 382
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.36 E-value=0.0018 Score=53.29 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 383
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.35 E-value=0.0019 Score=53.36 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 384
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.35 E-value=0.0018 Score=57.65 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 385
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.35 E-value=0.00086 Score=63.26 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=29.1
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
...+...+..|..++|.||||+||||+++.++..+..
T Consensus 36 ~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 36 INRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp HHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3344444555788999999999999999999997743
No 386
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.34 E-value=0.0029 Score=60.63 Aligned_cols=37 Identities=27% Similarity=0.513 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~ 159 (365)
...++|+|++|+|||||++.|+..+... +.++.+++.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~-g~kV~vi~~ 115 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIER-GHRVAVLAV 115 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhC-CCceEEEec
Confidence 3479999999999999999999987644 667776653
No 387
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.34 E-value=0.0019 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.716 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 388
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.32 E-value=0.002 Score=53.58 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 017797 124 SILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gl 145 (365)
.++|+|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 389
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.31 E-value=0.0021 Score=57.54 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.+..+.|+|++||||||+.+.|+..+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998763
No 390
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.31 E-value=0.0019 Score=58.60 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
-+++|+|++||||||+.+.|+..+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3799999999999999999988654
No 391
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.31 E-value=0.002 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998865
No 392
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.30 E-value=0.002 Score=53.18 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 393
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.30 E-value=0.002 Score=56.77 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 394
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.30 E-value=0.002 Score=53.89 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999998754
No 395
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.28 E-value=0.0021 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+--
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999998754
No 396
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.26 E-value=0.0018 Score=57.65 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=24.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
+++...++|.||||+||||+..+|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4445579999999999999999999987
No 397
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.26 E-value=0.0017 Score=53.84 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
-++|+|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999997644
No 398
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.25 E-value=0.0033 Score=57.04 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCe-EEEEc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-VVIVD 158 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~-i~~i~ 158 (365)
+|.++.|.|++||||||+++.|...+... +.. +.+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~r 63 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTR 63 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeec
Confidence 57899999999999999999999988654 344 44443
No 399
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.25 E-value=0.0022 Score=53.11 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 400
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.24 E-value=0.0023 Score=53.23 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 401
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.24 E-value=0.0023 Score=56.04 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll 146 (365)
.+++|+|++||||||+.+.|+..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999999864
No 402
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.24 E-value=0.0023 Score=53.70 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 403
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.23 E-value=0.011 Score=60.19 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=59.6
Q ss_pred chhhhhccc----CCcEEEEEcCCCCcHHHHHHHHHhcc---ccCCCCeEEEEcCCCcccCCCCCchhhhhhhhhcc---
Q 017797 112 IDMVYDLLH----YGKSILFVGRPGVGKTTVMREIARVL---SDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQ--- 181 (365)
Q Consensus 112 ~~~l~~~l~----~g~~v~iiGpnGsGKTTllr~l~gll---~~~~~~~i~~i~~~~ei~~~~~~~~~~~~~~~~~~--- 181 (365)
++.+...+. ...+++|.||.|+|||||++.++.-. .......+.++.-... .. ..+............
T Consensus 133 l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~-~~~~~~l~~l~~~l~~~~ 210 (591)
T 1z6t_A 133 VNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DK-SGLLMKLQNLCTRLDQDE 210 (591)
T ss_dssp HHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CH-HHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-ch-HHHHHHHHHHHHHhcccc
Confidence 444444443 34689999999999999999987643 2222223444431111 00 000000000000111
Q ss_pred -----CCCcchhHHHHHHHHHhh--CCCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcCcc
Q 017797 182 -----VPEPSLQHKVMIEAVENH--MPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEW 236 (365)
Q Consensus 182 -----~~S~g~~~r~~la~al~~--~P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~~~ 236 (365)
....-......+...+.. .|=+||+|..-+.... ..+ ..|..||+||....
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l---~~l-~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 211 SFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVL---KAF-DSQCQILLTTRDKS 268 (591)
T ss_dssp CSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHH---HTT-CSSCEEEEEESCGG
T ss_pred ccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHH---HHh-cCCCeEEEECCCcH
Confidence 011111222234444444 6889999998764333 222 45788999986654
No 404
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.22 E-value=0.0024 Score=53.70 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 405
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.22 E-value=0.0024 Score=52.89 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 406
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.21 E-value=0.0036 Score=55.78 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-eEEEEcC
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQK-RVVIVDT 159 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~~~~~~-~i~~i~~ 159 (365)
+|.++.|.|++||||||.++.|...+... +. .+.+..+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~re 40 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTRE 40 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeC
Confidence 47899999999999999999999988754 33 4444433
No 407
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.21 E-value=0.0023 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998754
No 408
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.21 E-value=0.0021 Score=62.09 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 017797 124 SILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.++|+|+||||||||++.|++...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 489999999999999999999764
No 409
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.19 E-value=0.0022 Score=62.58 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=25.0
Q ss_pred hcccCCcEEEEEcCCCCcHHHHHHHHHhc
Q 017797 117 DLLHYGKSILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 117 ~~l~~g~~v~iiGpnGsGKTTllr~l~gl 145 (365)
..+..+..++|+|+||+|||||+++|++.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34566778999999999999999999987
No 410
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.19 E-value=0.0023 Score=54.83 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 017797 123 KSILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gl 145 (365)
-.++|+|++|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 411
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.18 E-value=0.0023 Score=63.22 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|+||+|||||++.|+|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999975
No 412
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.17 E-value=0.0026 Score=53.39 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 017797 124 SILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gl 145 (365)
.++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999886
No 413
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.16 E-value=0.0021 Score=60.28 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=28.9
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
++.+...+..|.+++|.||.|+|||||++.++...
T Consensus 21 l~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 21 SRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 55555556667899999999999999999998754
No 414
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.16 E-value=0.0027 Score=52.64 Aligned_cols=22 Identities=18% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 017797 124 SILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gl 145 (365)
.++|+|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 415
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.15 E-value=0.0022 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 416
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.13 E-value=0.0025 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+.-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998864
No 417
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.13 E-value=0.0028 Score=54.13 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+++-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
No 418
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.12 E-value=0.0031 Score=60.18 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
++.++.|+||+|||||||...|+..++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998764
No 419
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.12 E-value=0.0029 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
No 420
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.11 E-value=0.0026 Score=58.79 Aligned_cols=26 Identities=42% Similarity=0.770 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
+..++|.||+|+||||++++++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999874
No 421
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.11 E-value=0.0037 Score=52.43 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
+.-.++|+|++|+|||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34578999999999999999998743
No 422
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.10 E-value=0.0028 Score=56.06 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
..|..++|+||+|||||||...|+...
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 357789999999999999999998753
No 423
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.10 E-value=0.0042 Score=54.54 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
..++|+|++|||||||++.|++..... .++.++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~--~~~~~i~ 64 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE--VKIGAML 64 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT--SCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEe
Confidence 479999999999999999999876433 4555554
No 424
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.08 E-value=0.003 Score=58.54 Aligned_cols=23 Identities=48% Similarity=0.647 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 017797 123 KSILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gl 145 (365)
.++.|+|+|||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999873
No 425
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.07 E-value=0.0027 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999998753
No 426
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.07 E-value=0.003 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 427
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.07 E-value=0.002 Score=64.86 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=29.6
Q ss_pred chhhhhcccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 112 ~~~l~~~l~~g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
...+...+..|..++|.||||+|||+++++|+..+.
T Consensus 31 i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 31 IRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 344444556788999999999999999999999874
No 428
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.06 E-value=0.0031 Score=58.50 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHh
Q 017797 123 KSILFVGRPGVGKTTVMREIAR 144 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~g 144 (365)
.+++|+|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 429
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.06 E-value=0.0025 Score=54.41 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 017797 123 KSILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gl 145 (365)
-.++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 430
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.05 E-value=0.0033 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 431
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.05 E-value=0.0032 Score=52.38 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 017797 123 KSILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gl 145 (365)
-.++|+|++|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 432
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.05 E-value=0.0031 Score=54.00 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
No 433
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.05 E-value=0.0087 Score=59.08 Aligned_cols=39 Identities=28% Similarity=0.571 Sum_probs=32.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~ 160 (365)
..+++++|++|+||||+...|+..+....+.++..++..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 358999999999999999999998865436788887654
No 434
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.05 E-value=0.0032 Score=52.74 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 435
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.03 E-value=0.003 Score=58.39 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|+||||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 436
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.02 E-value=0.0034 Score=52.57 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 437
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.01 E-value=0.0034 Score=52.96 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998743
No 438
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.01 E-value=0.0033 Score=55.05 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+++..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999865
No 439
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.99 E-value=0.0037 Score=53.22 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccC
Q 017797 124 SILFVGRPGVGKTTVMREIARVLSDE 149 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll~~~ 149 (365)
-++|+|++|+|||||++.+.+.....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~~ 41 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPEG 41 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccc
Confidence 48999999999999999999876543
No 440
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.99 E-value=0.0034 Score=60.01 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.+++|+||+||||||+.+.|+..++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999998764
No 441
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.98 E-value=0.0036 Score=52.64 Aligned_cols=23 Identities=17% Similarity=0.485 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 442
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.98 E-value=0.0037 Score=51.72 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 017797 125 ILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 125 v~iiGpnGsGKTTllr~l~gll 146 (365)
++|+|++|+|||||++.+.+-.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998643
No 443
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.98 E-value=0.0033 Score=60.18 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
++..++|.||||+||||+.++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999999987
No 444
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.96 E-value=0.0036 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 445
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.94 E-value=0.0037 Score=59.32 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
.+++|+||+||||||+.+.|+..++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998764
No 446
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.0038 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 447
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.94 E-value=0.0021 Score=54.32 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHh
Q 017797 122 GKSILFVGRPGVGKTTVMREIAR 144 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~g 144 (365)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44699999999999999998874
No 448
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.94 E-value=0.0038 Score=53.24 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++++|++|+|||||++.+++-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 449
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.91 E-value=0.0038 Score=58.63 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll 146 (365)
+.++|+|++|+|||||++.|.|.-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999999864
No 450
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.90 E-value=0.004 Score=53.74 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 451
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.89 E-value=0.004 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998654
No 452
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.88 E-value=0.0041 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 453
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.87 E-value=0.0072 Score=54.56 Aligned_cols=37 Identities=35% Similarity=0.580 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~ 160 (365)
..++.+.|..|+||||+++.|+..+. . +.++.+++..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~-g~~v~vvd~D 50 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-D-NYKVAYVNLD 50 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-T-TSCEEEEECC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-C-CCeEEEEeCC
Confidence 35789999999999999999998887 4 7788887643
No 454
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.87 E-value=0.0043 Score=53.16 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 017797 124 SILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gl 145 (365)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 455
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.0043 Score=53.29 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 456
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.86 E-value=0.004 Score=56.94 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|||||||++.+.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999863
No 457
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.86 E-value=0.0043 Score=53.01 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999754
No 458
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.85 E-value=0.0043 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 459
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.85 E-value=0.033 Score=48.89 Aligned_cols=35 Identities=29% Similarity=0.196 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEE
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i 157 (365)
.+.+.+.++||.||||..-.++--.. ..|.+|.++
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~-g~G~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV-GHGKNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEE
Confidence 45788999999999999877655443 236778777
No 460
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.85 E-value=0.0044 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57999999999999999998653
No 461
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.84 E-value=0.0071 Score=53.46 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~~~ 160 (365)
|.++.|-|+.||||||.++.|...+.. +..+.+..++
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~--~~~v~~~~eP 38 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIMTREP 38 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEEEESS
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHC--CCCEEEeeCC
Confidence 568899999999999999999998864 4556555443
No 462
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.84 E-value=0.0048 Score=60.53 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 121 ~g~~v~iiGpnGsGKTTllr~l~gll 146 (365)
...++.|+|++||||||+.+.|+..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998754
No 463
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.84 E-value=0.0046 Score=56.07 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll 146 (365)
-.++|+|++|||||||++.|++.-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
No 464
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.84 E-value=0.0032 Score=56.78 Aligned_cols=30 Identities=37% Similarity=0.491 Sum_probs=23.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 119 LHYGKSILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 119 l~~g~~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
..+|.++.|.||+||||||+++.|+..+..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457889999999999999999999998854
No 465
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.83 E-value=0.0044 Score=54.52 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
+.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35789999999999999999988653
No 466
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.81 E-value=0.0046 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 017797 124 SILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gl 145 (365)
.++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 467
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.81 E-value=0.0046 Score=61.20 Aligned_cols=26 Identities=42% Similarity=0.787 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
..+++.||||+||||+.++|+..+..
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 45899999999999999999998854
No 468
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.80 E-value=0.0053 Score=58.06 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
+.+++|+||+|||||||...|+..++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999998663
No 469
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.80 E-value=0.0022 Score=59.86 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~~~~~~~i~~i~ 158 (365)
+-+++|.||+||||||+.+.|+..+... +..+.+++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~-~~~~~vI~ 40 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRRE-GVKAVSIE 40 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHH-TCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhc-CCCeeEee
Confidence 4589999999999999999999866532 23344454
No 470
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.80 E-value=0.0042 Score=52.74 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll 146 (365)
-.++|+|++|+|||||++.+.+-.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 471
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.78 E-value=0.0048 Score=52.03 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 017797 124 SILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gl 145 (365)
.++|+|++|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999843
No 472
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.78 E-value=0.0046 Score=57.96 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 017797 123 KSILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 123 ~~v~iiGpnGsGKTTllr~l~gll 146 (365)
..++|+|++|+|||||++.|.|.-
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 369999999999999999999853
No 473
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.77 E-value=0.0053 Score=55.17 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 017797 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~gll~ 147 (365)
|.++.|.|+.||||||+++.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998874
No 474
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.77 E-value=0.005 Score=52.74 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 017797 124 SILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gl 145 (365)
-++|+|++|+|||||++.+++-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999877664
No 475
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.76 E-value=0.0048 Score=53.35 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999865
No 476
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.76 E-value=0.005 Score=53.15 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 477
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.74 E-value=0.0052 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 478
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.73 E-value=0.035 Score=56.15 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=68.5
Q ss_pred ECCcccCcchhhhhccc-----CCcEEEEEcCCCCcHHHHHHHHHh----ccccCCCCeEEEEcCCCcccCC-CCCchhh
Q 017797 104 VGRAVSGHIDMVYDLLH-----YGKSILFVGRPGVGKTTVMREIAR----VLSDEFQKRVVIVDTSNEIGGD-GDIPHSA 173 (365)
Q Consensus 104 ~~~~~~~~~~~l~~~l~-----~g~~v~iiGpnGsGKTTllr~l~g----ll~~~~~~~i~~i~~~~ei~~~-~~~~~~~ 173 (365)
||+... ++.|...+. ...+++|+|+.|.|||||.+.+.. .+.... ..+.++.-.....+. ..+....
T Consensus 131 ~GR~~~--~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYH--VDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY-DSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHH--HHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB-SEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHH--HHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC-CcEEEEEECCCCCCCHHHHHHHH
Confidence 455544 555544442 236899999999999999999995 333332 345555332211000 0000000
Q ss_pred hhhhh------hccCCCcc--hhHHHHHHHHHhhC-CCEEEEcCCCcHHHHHHHHHHHHcCcEEEEEEcCcchh
Q 017797 174 IGTAR------RMQVPEPS--LQHKVMIEAVENHM-PEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLE 238 (365)
Q Consensus 174 ~~~~~------~~~~~S~g--~~~r~~la~al~~~-P~vlilDEp~~~~d~~~i~~~~~~G~tVi~t~H~~~~~ 238 (365)
+.... .......+ ......+...|..+ +=+||+|..-+..+. .+. ...|..||+||-....+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~--~~~gs~ilvTTR~~~v~ 278 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA--QELRLRCLVTTRDVEIS 278 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH--HHTTCEEEEEESBGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc--ccCCCEEEEEcCCHHHH
Confidence 00000 00001111 11234566666775 888999999886544 221 23788999999875543
No 479
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.73 E-value=0.0051 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
-++|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 480
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.73 E-value=0.0058 Score=54.59 Aligned_cols=29 Identities=34% Similarity=0.339 Sum_probs=26.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIARVLSD 148 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~gll~~ 148 (365)
.+|.++.|.|++||||||.++.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46889999999999999999999998865
No 481
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.73 E-value=0.0052 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 482
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.72 E-value=0.0051 Score=53.26 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 483
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.71 E-value=0.0054 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 484
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.70 E-value=0.0054 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 485
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.69 E-value=0.006 Score=52.73 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=22.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHh
Q 017797 120 HYGKSILFVGRPGVGKTTVMREIAR 144 (365)
Q Consensus 120 ~~g~~v~iiGpnGsGKTTllr~l~g 144 (365)
..|..++|.|++|+||||+...+..
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3577899999999999999998876
No 486
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.68 E-value=0.0054 Score=56.09 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
No 487
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.67 E-value=0.032 Score=54.87 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|.+|+|||||++.+++..
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 488
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.67 E-value=0.0057 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.328 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 489
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.67 E-value=0.0058 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+--
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 490
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.66 E-value=0.0057 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHh
Q 017797 122 GKSILFVGRPGVGKTTVMREIAR 144 (365)
Q Consensus 122 g~~v~iiGpnGsGKTTllr~l~g 144 (365)
.-.++|+|++|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999985
No 491
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.66 E-value=0.0057 Score=52.82 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 492
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.65 E-value=0.0057 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+--
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 493
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.65 E-value=0.0054 Score=57.15 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
No 494
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.64 E-value=0.0056 Score=53.05 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 495
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.64 E-value=0.004 Score=59.90 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 017797 125 ILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 125 v~iiGpnGsGKTTllr~l~gll 146 (365)
++|+|++|+|||||++.|.+..
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCC
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 6999999999999999998764
No 496
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.60 E-value=0.0056 Score=59.18 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 017797 125 ILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 125 v~iiGpnGsGKTTllr~l~gll 146 (365)
++|+|+||+|||||++.|++..
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999874
No 497
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.60 E-value=0.0062 Score=52.20 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
No 498
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.60 E-value=0.0042 Score=53.83 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|+|||||++.+++..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999997643
No 499
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.59 E-value=0.0064 Score=56.02 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 017797 124 SILFVGRPGVGKTTVMREIARVL 146 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gll 146 (365)
.++|+|++|||||||++.++|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 500
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.59 E-value=0.0053 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 017797 124 SILFVGRPGVGKTTVMREIARV 145 (365)
Q Consensus 124 ~v~iiGpnGsGKTTllr~l~gl 145 (365)
.++|+|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
Done!