BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017798
         (365 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding
           Domain Of Aterf1 And Gcc-Box Dna, Minimized Average
           Structure
          Length = 63

 Score = 61.2 bits (147), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 173 KLYRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNFP 231
           K YRGVRQR WGK+ AEIR P KN  R+WLGTF+T               RG  A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60


>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr,
           Minimized Mean Structure
 pdb|3GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, 46
           Structures
          Length = 70

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/66 (53%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 172 AKLYRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFDTXXXXXXXXXXXXXXXRGDFARLNF 230
            K YRGVRQR WGK+ AEIR P KN  R+WLGTF+T               RG  A LNF
Sbjct: 3   GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62

Query: 231 PNLRHN 236
           P LR N
Sbjct: 63  P-LRVN 67


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,609,377
Number of Sequences: 62578
Number of extensions: 268239
Number of successful extensions: 293
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 2
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)