Query 017798
Match_columns 365
No_of_seqs 301 out of 1275
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 05:07:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 9.6E-24 3.3E-28 161.5 6.8 60 174-233 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 91.1 0.18 6.3E-06 40.2 3.7 29 170-200 3-32 (77)
3 1u3e_M HNH homing endonuclease 79.1 0.33 1.1E-05 42.2 -0.5 38 175-215 109-146 (174)
4 1z1b_A Integrase; protein-DNA 76.9 2.7 9.4E-05 38.0 4.9 42 176-221 14-55 (356)
5 3jtz_A Integrase; four strande 54.2 23 0.00078 27.8 5.5 38 185-222 37-76 (88)
6 3ju0_A Phage integrase; four s 34.5 58 0.002 26.5 5.1 37 185-221 37-75 (108)
7 1x60_A Sporulation-specific N- 32.0 33 0.0011 25.3 3.0 23 197-219 46-68 (79)
8 2ftc_I Mitochondrial ribosomal 31.9 54 0.0018 27.4 4.6 36 185-222 79-114 (118)
9 1b69_A Protein (integrase); in 30.6 49 0.0017 25.6 3.8 28 171-199 8-35 (69)
10 1uta_A FTSN, MSGA, cell divisi 27.1 62 0.0021 24.1 3.8 23 197-219 46-68 (81)
11 3tj6_B Protein PS 120; cytoske 24.8 16 0.00056 23.0 0.1 13 21-33 7-19 (23)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.89 E-value=9.6e-24 Score=161.52 Aligned_cols=60 Identities=67% Similarity=1.127 Sum_probs=56.9
Q ss_pred CceeeEECCCCcEEEEEeecC-CCeEeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 017798 174 LYRGVRQRHWGKWVAEIRLPK-NRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNL 233 (365)
Q Consensus 174 gYRGVr~r~~GKW~AeIr~p~-~gKriyLGtFdTaEEAArAYD~AA~klrG~~A~lNFP~~ 233 (365)
+||||++++||||+|+|++|. +|+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 799998888999999999986 589999999999999999999999999999999999975
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=91.06 E-value=0.18 Score=40.16 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=23.8
Q ss_pred CCCCCceee-EECCCCcEEEEEeecCCCeEee
Q 017798 170 KPAKLYRGV-RQRHWGKWVAEIRLPKNRTRLW 200 (365)
Q Consensus 170 ~ntSgYRGV-r~r~~GKW~AeIr~p~~gKriy 200 (365)
..+|+|.|| +.++.+.|+|.-.. +|++..
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rrs 32 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRRS 32 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeEee
Confidence 468999999 78899999999887 676653
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=79.10 E-value=0.33 Score=42.20 Aligned_cols=38 Identities=5% Similarity=-0.079 Sum_probs=30.0
Q ss_pred ceeeEECCCCcEEEEEeecCCCeEeecCCCCCHHHHHHHHH
Q 017798 175 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYD 215 (365)
Q Consensus 175 YRGVr~r~~GKW~AeIr~p~~gKriyLGtFdTaEEAArAYD 215 (365)
++||.....++|.+.|.+ + +.++||.|++.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 567733445779999998 5 6678999999999999963
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=76.87 E-value=2.7 Score=37.99 Aligned_cols=42 Identities=17% Similarity=0.063 Sum_probs=31.8
Q ss_pred eeeEECCCCcEEEEEeecCCCeEeecCCCCCHHHHHHHHHHHHHHH
Q 017798 176 RGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKL 221 (365)
Q Consensus 176 RGVr~r~~GKW~AeIr~p~~gKriyLGtFdTaEEAArAYD~AA~kl 221 (365)
.||++++.|.|+.+... +||++.+|. |..||..+..++...+
T Consensus 14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 46877778999876654 889999996 8888887776655554
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=54.22 E-value=23 Score=27.85 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=27.4
Q ss_pred cEEEEEeecCCCeEeecCCCC--CHHHHHHHHHHHHHHHh
Q 017798 185 KWVAEIRLPKNRTRLWLGTFD--TAEEAALAYDKAAYKLR 222 (365)
Q Consensus 185 KW~AeIr~p~~gKriyLGtFd--TaEEAArAYD~AA~klr 222 (365)
.|+-+.+...+.+++-||.|. |.++|....+++...+.
T Consensus 37 ~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l~ 76 (88)
T 3jtz_A 37 HWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLA 76 (88)
T ss_dssp EEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHHH
Confidence 498888873333457899997 58888888777776663
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=34.49 E-value=58 Score=26.53 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=25.7
Q ss_pred cEEEEEeecCCCeEeecCCCC--CHHHHHHHHHHHHHHH
Q 017798 185 KWVAEIRLPKNRTRLWLGTFD--TAEEAALAYDKAAYKL 221 (365)
Q Consensus 185 KW~AeIr~p~~gKriyLGtFd--TaEEAArAYD~AA~kl 221 (365)
.|+-+.+...+.+++-||.|. |..+|....+++...+
T Consensus 37 ~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 37 YWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 498888762233457799997 4788877777766655
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=31.98 E-value=33 Score=25.33 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=18.4
Q ss_pred eEeecCCCCCHHHHHHHHHHHHH
Q 017798 197 TRLWLGTFDTAEEAALAYDKAAY 219 (365)
Q Consensus 197 KriyLGtFdTaEEAArAYD~AA~ 219 (365)
-||++|.|.+.++|..+.++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 46778999999999988776654
No 8
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=31.85 E-value=54 Score=27.39 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=28.9
Q ss_pred cEEEEEeecCCCeEeecCCCCCHHHHHHHHHHHHHHHh
Q 017798 185 KWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLR 222 (365)
Q Consensus 185 KW~AeIr~p~~gKriyLGtFdTaEEAArAYD~AA~klr 222 (365)
-|+|.|.. +..-+-++...+++.|..|..+|+.+|=
T Consensus 79 ~wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 79 HYVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 39999985 5555557776889999999999998874
No 9
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=30.58 E-value=49 Score=25.63 Aligned_cols=28 Identities=18% Similarity=0.064 Sum_probs=21.8
Q ss_pred CCCCceeeEECCCCcEEEEEeecCCCeEe
Q 017798 171 PAKLYRGVRQRHWGKWVAEIRLPKNRTRL 199 (365)
Q Consensus 171 ntSgYRGVr~r~~GKW~AeIr~p~~gKri 199 (365)
+.-.+.|+.+|..|+|+.++.+ ..|++.
T Consensus 8 gr~L~~GesqR~dG~Y~yry~d-~~Gkr~ 35 (69)
T 1b69_A 8 GRILKTGESQRKDGRYLYKYID-SFGEPQ 35 (69)
T ss_dssp SSCCCTTEEECSSSCEEEEEEC-TTSSEE
T ss_pred CCccCCCeEEccCCcEEEEEEc-CCCCEE
Confidence 3457889999999999999987 345554
No 10
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=27.12 E-value=62 Score=24.15 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=18.4
Q ss_pred eEeecCCCCCHHHHHHHHHHHHH
Q 017798 197 TRLWLGTFDTAEEAALAYDKAAY 219 (365)
Q Consensus 197 KriyLGtFdTaEEAArAYD~AA~ 219 (365)
-||.+|.|.+.++|..+.++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 46678999999999988776654
No 11
>3tj6_B Protein PS 120; cytoskeleton, epidemic typhus, SCA4, spotted fever, alpha-HE bundle domain, protein-protein interactions, cell adhesion; 2.76A {Rickettsia rickettsii}
Probab=24.79 E-value=16 Score=22.98 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=11.3
Q ss_pred hhhHHHHhhhhhc
Q 017798 21 GGELMEALEPFMK 33 (365)
Q Consensus 21 ~~elm~alepfmk 33 (365)
.+|.|+||.+.|+
T Consensus 7 aqdv~~AL~nvi~ 19 (23)
T 3tj6_B 7 AREVINAVNPVIE 19 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6799999998876
Done!