Query 017799
Match_columns 365
No_of_seqs 187 out of 429
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 05:08:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 2.9E-29 9.9E-34 193.9 7.0 61 255-316 2-62 (64)
2 2yus_A SWI/SNF-related matrix- 92.6 0.47 1.6E-05 37.2 7.7 48 257-310 15-62 (79)
3 2yum_A ZZZ3 protein, zinc fing 92.6 0.24 8.4E-06 37.6 5.9 56 257-315 5-63 (75)
4 2cu7_A KIAA1915 protein; nucle 91.4 0.57 1.9E-05 35.5 6.7 53 257-315 6-58 (72)
5 1x41_A Transcriptional adaptor 85.9 1.1 3.7E-05 32.8 4.7 50 257-312 5-55 (60)
6 2hzd_A Transcriptional enhance 84.9 1.2 4E-05 35.9 4.7 59 257-316 3-77 (82)
7 2cqq_A RSGI RUH-037, DNAJ homo 82.0 4.2 0.00014 31.4 6.7 48 261-314 9-59 (72)
8 2cqr_A RSGI RUH-043, DNAJ homo 80.5 6.4 0.00022 30.4 7.3 51 259-312 17-68 (73)
9 2iw5_B Protein corest, REST co 79.7 2.7 9.2E-05 39.6 5.8 51 257-313 130-180 (235)
10 2elk_A SPCC24B10.08C protein; 79.4 3 0.0001 30.3 4.9 47 260-311 9-56 (58)
11 2xag_B REST corepressor 1; ami 78.1 3.4 0.00012 42.4 6.5 52 257-314 377-428 (482)
12 1ity_A TRF1; helix-turn-helix, 75.3 17 0.00059 26.8 8.2 54 256-312 6-59 (69)
13 2d9a_A B-MYB, MYB-related prot 73.3 12 0.00042 26.8 6.7 50 256-310 4-53 (60)
14 3sjm_A Telomeric repeat-bindin 69.9 13 0.00043 27.7 6.3 49 257-308 8-56 (64)
15 1guu_A C-MYB, MYB proto-oncoge 69.8 12 0.00041 26.0 5.9 46 260-310 3-48 (52)
16 2dim_A Cell division cycle 5-l 66.7 20 0.00067 26.6 6.8 50 257-311 6-55 (70)
17 2yqk_A Arginine-glutamic acid 65.7 6.3 0.00021 29.3 3.8 48 255-307 4-51 (63)
18 2cjj_A Radialis; plant develop 63.6 9.2 0.00031 30.9 4.7 49 262-313 10-59 (93)
19 1gvd_A MYB proto-oncogene prot 60.1 22 0.00076 24.7 5.7 47 260-311 3-49 (52)
20 1wgx_A KIAA1903 protein; MYB D 59.7 13 0.00046 28.9 4.9 46 262-310 10-56 (73)
21 2eqr_A N-COR1, N-COR, nuclear 56.8 12 0.00041 27.4 3.9 46 255-306 7-52 (61)
22 4eef_G F-HB80.4, designed hema 55.4 4 0.00014 32.3 1.2 44 262-308 22-66 (74)
23 1w0t_A Telomeric repeat bindin 50.0 53 0.0018 22.9 6.3 48 260-310 2-49 (53)
24 2din_A Cell division cycle 5-l 48.0 47 0.0016 24.2 6.0 55 257-318 6-60 (66)
25 2aje_A Telomere repeat-binding 41.6 65 0.0022 26.5 6.5 56 255-316 8-65 (105)
26 1x58_A Hypothetical protein 49 40.0 1.2E+02 0.004 23.1 7.1 55 257-318 5-60 (62)
27 2da3_A Alpha-fetoprotein enhan 36.5 1E+02 0.0034 22.8 6.4 61 255-318 16-76 (80)
28 2k9n_A MYB24; R2R3 domain, DNA 34.5 1E+02 0.0035 24.3 6.5 48 260-313 53-100 (107)
29 2ltp_A Nuclear receptor corepr 39.3 9.1 0.00031 30.1 0.0 51 257-313 13-63 (89)
30 1gv2_A C-MYB, MYB proto-oncoge 31.2 1.2E+02 0.004 23.7 6.2 45 260-310 56-100 (105)
31 3osg_A MYB21; transcription-DN 30.6 1.1E+02 0.0039 24.8 6.3 49 257-311 8-56 (126)
32 3osg_A MYB21; transcription-DN 30.3 1.2E+02 0.0042 24.6 6.5 51 262-318 64-114 (126)
33 2crg_A Metastasis associated p 29.0 50 0.0017 24.9 3.6 46 257-307 5-50 (70)
34 1gv2_A C-MYB, MYB proto-oncoge 28.9 1.1E+02 0.0037 23.8 5.7 46 260-310 4-49 (105)
35 2e1o_A Homeobox protein PRH; D 28.5 1.3E+02 0.0045 21.8 5.7 59 255-316 6-64 (70)
36 2k9n_A MYB24; R2R3 domain, DNA 24.0 1.6E+02 0.0055 23.2 5.9 45 261-310 2-46 (107)
37 2roh_A RTBP1, telomere binding 23.7 2.1E+02 0.0073 24.0 6.8 54 255-314 26-81 (122)
38 3zqc_A MYB3; transcription-DNA 22.3 2.3E+02 0.008 23.0 6.8 47 262-314 56-102 (131)
39 2llk_A Cyclin-D-binding MYB-li 22.2 1.9E+02 0.0066 22.0 5.8 45 257-308 20-64 (73)
40 1h8a_C AMV V-MYB, MYB transfor 21.7 2.2E+02 0.0075 23.0 6.4 49 258-311 25-73 (128)
41 2ckx_A NGTRF1, telomere bindin 21.3 2.1E+02 0.0071 22.3 5.9 46 262-310 2-49 (83)
42 1h8a_C AMV V-MYB, MYB transfor 21.1 2E+02 0.0069 23.2 6.1 44 260-309 79-122 (128)
43 2dmt_A Homeobox protein BARH-l 20.4 2.7E+02 0.0092 20.6 7.3 61 255-318 16-76 (80)
44 2djn_A Homeobox protein DLX-5; 20.2 2.5E+02 0.0085 20.2 6.4 61 255-318 6-66 (70)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=2.9e-29 Score=193.86 Aligned_cols=61 Identities=54% Similarity=0.822 Sum_probs=58.1
Q ss_pred CCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhcccC
Q 017799 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYR 316 (365)
Q Consensus 255 ~~~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~~~~ 316 (365)
+.+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+..+|
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 4589999999999999999999999 699999999999999999999999999999998765
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=92.59 E-value=0.47 Score=37.19 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=39.3
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 017799 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY 310 (365)
Q Consensus 257 ~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 310 (365)
...+-.||+|=+++|++||+.+|+- =+.|-+.| ++-|..+++.|.++|
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~----W~~IA~~v--~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDD----WNKVSEHV--GSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSC----HHHHHHHH--SSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCC----HHHHHHHc--CCCCHHHHHHHHHHh
Confidence 3446789999999999999999942 35666665 489999999999987
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.59 E-value=0.24 Score=37.57 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=41.9
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChH---HHHhhcCCCCCCHHHHHHHhhhhhhccc
Q 017799 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPK---GVLKLMKVEGLTIYHVKSHLQKYRTARY 315 (365)
Q Consensus 257 ~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK---~IL~lM~v~gLT~~hVkSHLQKYR~~~~ 315 (365)
...+-.||+|=+++|++||..+| .+...|+ .|-+. |+|-|..+|+.|-|||-....
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~--~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADE--LGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHH--HSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHH--hCCCCHHHHHHHHHHHHHHHH
Confidence 34455899999999999999999 3332233 34344 478999999999999976543
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=91.42 E-value=0.57 Score=35.46 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=42.0
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhccc
Q 017799 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARY 315 (365)
Q Consensus 257 ~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~~~ 315 (365)
...+-.||+|=++.|++||.++|- .=+.|-+. ++|-|-.+||.|.++|-..+.
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNKV 58 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHHS
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHHH
Confidence 455668999999999999999993 33555554 479999999999999865543
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=85.89 E-value=1.1 Score=32.77 Aligned_cols=50 Identities=28% Similarity=0.319 Sum_probs=39.5
Q ss_pred CCCCcccChHHHHHHHHHHHHhC-CCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhh
Q 017799 257 AKPRMRWTPELHEAFVEAVNQLG-GSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 312 (365)
Q Consensus 257 ~K~RlrWT~eLH~rFV~Av~~LG-G~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~ 312 (365)
.-.|-.||+|=.+++++||.++| +- =+.|-+.| +|-|-.+++.|-++|-.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~----W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGN----WQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTC----HHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCc----HHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 34566799999999999999999 32 34555555 68999999999888754
No 6
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=84.86 E-value=1.2 Score=35.89 Aligned_cols=59 Identities=22% Similarity=0.288 Sum_probs=38.4
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHH-h-hc-C-------------CCCCCHHHHHHHhhhhhhcccC
Q 017799 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVL-K-LM-K-------------VEGLTIYHVKSHLQKYRTARYR 316 (365)
Q Consensus 257 ~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL-~-lM-~-------------v~gLT~~hVkSHLQKYR~~~~~ 316 (365)
++..-+|.++|-..|++|++..--....+-+ +. + .| | -.--|+.+|.||||--|..+.+
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~-ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYPPCGRRKII-LSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSCSSSCCCCC-HHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCCCcccee-ecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence 3455689999999999999887622222221 10 0 11 1 1457889999999987765543
No 7
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=82.01 E-value=4.2 Score=31.35 Aligned_cols=48 Identities=17% Similarity=0.355 Sum_probs=37.8
Q ss_pred cccChHHHHHHHHHHHHhCCCCCCChHH---HHhhcCCCCCCHHHHHHHhhhhhhcc
Q 017799 261 MRWTPELHEAFVEAVNQLGGSERATPKG---VLKLMKVEGLTIYHVKSHLQKYRTAR 314 (365)
Q Consensus 261 lrWT~eLH~rFV~Av~~LGG~~kAtPK~---IL~lM~v~gLT~~hVkSHLQKYR~~~ 314 (365)
-.||.|=+.+|+.|+..+++ -||.+ |-+.| |-|..+|+.|-+++....
T Consensus 9 ~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHhc
Confidence 36999999999999999983 34554 44555 689999999988876553
No 8
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=80.51 E-value=6.4 Score=30.40 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=40.2
Q ss_pred CCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcC-CCCCCHHHHHHHhhhhhh
Q 017799 259 PRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMK-VEGLTIYHVKSHLQKYRT 312 (365)
Q Consensus 259 ~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~-v~gLT~~hVkSHLQKYR~ 312 (365)
.+-.||.+=..+|++||..+|. -+|..--++=. |+|-|-.+|+.|.+++..
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3446999999999999999992 37776554433 689999999999887653
No 9
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=79.69 E-value=2.7 Score=39.58 Aligned_cols=51 Identities=24% Similarity=0.423 Sum_probs=42.1
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhc
Q 017799 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTA 313 (365)
Q Consensus 257 ~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~ 313 (365)
.|..-+||+|=++.|++|+...|- + =..|-++ |++=|..+||.|..+||..
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-D---W~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-D---FQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-C---HHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-C---HHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 467779999999999999999993 1 4455555 5789999999999999864
No 10
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=79.42 E-value=3 Score=30.35 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=35.9
Q ss_pred CcccChHHHHHHHHHHHHhC-CCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 017799 260 RMRWTPELHEAFVEAVNQLG-GSERATPKGVLKLMKVEGLTIYHVKSHLQKYR 311 (365)
Q Consensus 260 RlrWT~eLH~rFV~Av~~LG-G~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 311 (365)
+-.||+|=.+++++||++.| +- =+.|-+.|+. |-|-.+++.|-++|-
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~----W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGN----WADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTC----HHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCC----HHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 44699999999999999999 42 2344444431 789999999988774
No 11
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=78.14 E-value=3.4 Score=42.42 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=42.3
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhcc
Q 017799 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR 314 (365)
Q Consensus 257 ~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~~ 314 (365)
.+..-+||.|=|..|++|+.+.|- .=+.|-+.++ .=|..+|++|.++||...
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~Vg--TKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIG--NKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHS--SCCHHHHHHHHHHTTTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhC--CCCHHHHHHHHHHHHHHh
Confidence 466789999999999999999993 2455656655 469999999999999754
No 12
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=75.31 E-value=17 Score=26.84 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=42.7
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhh
Q 017799 256 PAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 312 (365)
Q Consensus 256 ~~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~ 312 (365)
+++.|-.||+|=-++.+++|+++|. ..=+.|.+.|+..|-|-.+++.+-..|-.
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 4678889999999999999999992 12366777776558999999987766643
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=73.31 E-value=12 Score=26.82 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=38.2
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 017799 256 PAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY 310 (365)
Q Consensus 256 ~~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 310 (365)
+...|-.||+|=.++++++|.++|. ..=+.|-+.| +|-|-.+++.|-.+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 3566778999999999999999992 1224454554 689999999887766
No 14
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=69.85 E-value=13 Score=27.73 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=37.6
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhh
Q 017799 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQ 308 (365)
Q Consensus 257 ~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQ 308 (365)
.+.|-.||+|=-++.+++|+++|. . .=+.|.+.+.+.|-|-.+++-+-.
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw~ 56 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGE-G--NWAAISKNYPFVNRTAVMIKDRWR 56 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHccCC-C--chHHHHhhcCCCCCCHHHHHHHHH
Confidence 345678999999999999999992 1 245677888888999999886543
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=69.84 E-value=12 Score=26.02 Aligned_cols=46 Identities=26% Similarity=0.287 Sum_probs=36.2
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 017799 260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY 310 (365)
Q Consensus 260 RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 310 (365)
|-.||+|=.++++++|.++|. ..=+.|-+.| +|-|-.+++.|-++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999993 2345565554 689999999887766
No 16
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.68 E-value=20 Score=26.56 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=39.0
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 017799 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYR 311 (365)
Q Consensus 257 ~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 311 (365)
...|=.||+|=.++++++|.++|. ..=+.|-+.|+ |-|-.+++-|-.+|-
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEWL 55 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHHc
Confidence 456778999999999999999991 12356666664 899999998877663
No 17
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.73 E-value=6.3 Score=29.27 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=33.5
Q ss_pred CCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHh
Q 017799 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHL 307 (365)
Q Consensus 255 ~~~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHL 307 (365)
.+...+-.||+|=|+.|.+|+.+.|= + =..|-+.| |+.-|..+|..+-
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~~-v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-N---FFRIRKEL-LPNKETGELITFY 51 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-C---HHHHHHHS-CTTSCHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-c---HHHHHHHH-cCCCcHHHHHHHH
Confidence 34566679999999999999999991 2 13333311 5778888886543
No 18
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=63.59 E-value=9.2 Score=30.85 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=37.3
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChHHHHhhc-CCCCCCHHHHHHHhhhhhhc
Q 017799 262 RWTPELHEAFVEAVNQLGGSERATPKGVLKLM-KVEGLTIYHVKSHLQKYRTA 313 (365)
Q Consensus 262 rWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM-~v~gLT~~hVkSHLQKYR~~ 313 (365)
.||.|=...|++|+.++|. + +|.+--++= -|+|-|-.+|+.|-+++...
T Consensus 10 ~WT~eEd~~L~~al~~~~~-~--~~~rW~~IA~~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYDK-D--TPDRWANVARAVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp SCCHHHHHHHHHHHHHSCT-T--CTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC-C--CCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5999999999999999982 2 555433222 25799999999999887543
No 19
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=60.12 E-value=22 Score=24.68 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=35.5
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 017799 260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYR 311 (365)
Q Consensus 260 RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 311 (365)
|-.||+|=.++++++|.++|. ..=+.|-+.| +|-|-.+++.|-.+|-
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHHc
Confidence 347999999999999999993 1123454444 6899999998877663
No 20
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=59.75 E-value=13 Score=28.90 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=37.0
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChHHHHhhc-CCCCCCHHHHHHHhhhh
Q 017799 262 RWTPELHEAFVEAVNQLGGSERATPKGVLKLM-KVEGLTIYHVKSHLQKY 310 (365)
Q Consensus 262 rWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM-~v~gLT~~hVkSHLQKY 310 (365)
.||.+=+.+|.+|+..++ +.+|.+-.++- -|+|-|.++|+.|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 499999999999999987 44787665543 38899999999876654
No 21
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.79 E-value=12 Score=27.40 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=34.7
Q ss_pred CCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHH
Q 017799 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSH 306 (365)
Q Consensus 255 ~~~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSH 306 (365)
..++..-.||+|=|+.|++|+.+.|- + =..|-+. |++-|..+|.-|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk--~--w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK--N--FGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT--C--HHHHHHH--CTTSCHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC--C--HHHHHHH--cCCCCHHHHHHH
Confidence 34577789999999999999999982 1 2444333 578999888755
No 22
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=55.41 E-value=4 Score=32.28 Aligned_cols=44 Identities=30% Similarity=0.350 Sum_probs=35.8
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChHHHHhhcC-CCCCCHHHHHHHhh
Q 017799 262 RWTPELHEAFVEAVNQLGGSERATPKGVLKLMK-VEGLTIYHVKSHLQ 308 (365)
Q Consensus 262 rWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~-v~gLT~~hVkSHLQ 308 (365)
.||.+=.+.|..|+..++ +-+|.+--++-. |+|-|...|+.|-|
T Consensus 22 ~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 22 PWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 499999999999998875 556776655443 78999999999865
No 23
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=49.96 E-value=53 Score=22.88 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=36.7
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 017799 260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY 310 (365)
Q Consensus 260 RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 310 (365)
|-.||+|=.+..+++|+.+|. ..=+.|.+.|+..|-|-.+++.+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999992 123567777765588999998765554
No 24
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.00 E-value=47 Score=24.16 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=41.0
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhcccCCC
Q 017799 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPD 318 (365)
Q Consensus 257 ~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~~~~~~ 318 (365)
...+-.||+|=.++++++|.++|. .=..|-+++ |-|-.+|+.|-+.|-....+.+
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhChHhcCC
Confidence 344567999999999999999983 335555544 6999999999998865544433
No 25
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=41.59 E-value=65 Score=26.47 Aligned_cols=56 Identities=21% Similarity=0.190 Sum_probs=42.0
Q ss_pred CCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcC--CCCCCHHHHHHHhhhhhhcccC
Q 017799 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMK--VEGLTIYHVKSHLQKYRTARYR 316 (365)
Q Consensus 255 ~~~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~--v~gLT~~hVkSHLQKYR~~~~~ 316 (365)
..++.|-.||+|=-+..+++|+++|. . .=+.|++.+. .+|-|--++|.+ ||...++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g--~W~~I~~~~~~~f~~RT~v~lKdr---Wrnllk~ 65 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT-G--RWRDVKLCAFEDADHRTYVDLKDK---WKTLVHT 65 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS-S--SHHHHHSSSSSSTTCCCHHHHHHH---HHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-C--ChHHHHHHhccccCCCCHHHHHHH---HHHHHhh
Confidence 34789999999999999999999993 1 2346776553 489999999965 5554443
No 26
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=40.04 E-value=1.2e+02 Score=23.07 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=43.6
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcC-CCCCCHHHHHHHhhhhhhcccCCC
Q 017799 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMK-VEGLTIYHVKSHLQKYRTARYRPD 318 (365)
Q Consensus 257 ~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~-v~gLT~~hVkSHLQKYR~~~~~~~ 318 (365)
.+.|-.||+|=-+.-++.|+++|- .=+.|+.--. .+|-|--.||. |||.-.+++.
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~~~RT~VdLKd---k~r~L~k~~~ 60 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN----HWNSILWSFPFQKGRRAVDLAH---KYHRLISGPS 60 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS----CHHHHHHHSCCCTTCCHHHHHH---HHHHHHTCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH----hHHHHHHhCCCccCcccchHHH---HHHHHHhccc
Confidence 467889999999999999999992 5678886434 57899999995 7887665544
No 27
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=36.52 E-value=1e+02 Score=22.75 Aligned_cols=61 Identities=21% Similarity=0.173 Sum_probs=40.9
Q ss_pred CCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhcccCCC
Q 017799 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPD 318 (365)
Q Consensus 255 ~~~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~~~~~~ 318 (365)
..++.|.++|.+-.. .++++.+.. ...+...+.++...-|||..+|+-=.|.-|...++..
T Consensus 16 ~~rr~Rt~ft~~Ql~-~Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 16 RDKRLRTTITPEQLE-ILYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCTTCCSSCCTTTHH-HHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHH-HHHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 456778888887433 333443333 3556666666666678999999999998887655544
No 28
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=34.52 E-value=1e+02 Score=24.33 Aligned_cols=48 Identities=10% Similarity=0.179 Sum_probs=37.2
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhc
Q 017799 260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTA 313 (365)
Q Consensus 260 RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~ 313 (365)
+-.||+|=.+.++++|.++|. .=..|-+.| +|-|-.+|+.|...+...
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHHhh
Confidence 347999999999999999994 234555554 799999999987765443
No 29
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=39.27 E-value=9.1 Score=30.14 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=38.2
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhc
Q 017799 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTA 313 (365)
Q Consensus 257 ~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~ 313 (365)
.-.+=.||+|=.+.|+++|..+|-- =..|-+. ++|-|-.+|+.|...|...
T Consensus 13 ~~~~~~WT~eEd~~l~~~~~~~G~~----W~~IA~~--l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 13 NLYFQGWTEEEMGTAKKGLLEHGRN----WSAIARM--VGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 4455689999999999999999931 2334333 5799999999988776543
No 30
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=31.16 E-value=1.2e+02 Score=23.66 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=34.9
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 017799 260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY 310 (365)
Q Consensus 260 RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 310 (365)
+-.||+|=.+.++++|.++|. .=..|-+. ++|-|-.+|+.|...+
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~--l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGN----RWAEIAKL--LPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSS----CHHHHHTT--CTTCCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCC----CHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 447999999999999999994 12345444 5899999999886543
No 31
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=30.59 E-value=1.1e+02 Score=24.83 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=38.2
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 017799 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYR 311 (365)
Q Consensus 257 ~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 311 (365)
+..|-.||+|=-++.+++|++.|. .=+.|-+.| +|-|..+++.+-.+|-
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHhhhc
Confidence 466778999999999999999994 345665554 5788888887766654
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=30.31 E-value=1.2e+02 Score=24.62 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=38.9
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhcccCCC
Q 017799 262 RWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPD 318 (365)
Q Consensus 262 rWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~~~~~~ 318 (365)
.||+|=.++++++|.++|.. =..|-+. ++|-|-.+|+.|...+......|.
T Consensus 64 ~WT~eEd~~L~~~v~~~G~~----W~~Ia~~--l~gRt~~~~k~rw~~l~~k~~~p~ 114 (126)
T 3osg_A 64 PWTAEEDALLVQKIQEYGRQ----WAIIAKF--FPGRTDIHIKNRWVTISNKLGIPQ 114 (126)
T ss_dssp CCCHHHHHHHHHHHHHHCSC----HHHHHTT--STTCCHHHHHHHHHHHHHHTTC--
T ss_pred cCCHHHHHHHHHHHHHHCcC----HHHHHHH--cCCCCHHHHHHHHHHHHHhcCCCC
Confidence 69999999999999999942 3455554 579999999999877765555554
No 33
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=28.98 E-value=50 Score=24.89 Aligned_cols=46 Identities=11% Similarity=0.124 Sum_probs=33.4
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHh
Q 017799 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHL 307 (365)
Q Consensus 257 ~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHL 307 (365)
++..-.||+|=++.|.+|+...|= + =..|-+. -|++-|..+|..+-
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~-~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-D---FNDIRQD-FLPWKSLTSIIEYY 50 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-C---HHHHHHT-TCSSSCHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-c---HHHHHHH-HcCCCCHHHHHHHH
Confidence 466778999999999999999992 2 2333331 16778888887664
No 34
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=28.86 E-value=1.1e+02 Score=23.82 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=35.4
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 017799 260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY 310 (365)
Q Consensus 260 RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 310 (365)
+-.||+|=.++++++|+..|. . .=+.|-+.| +|-|..+++.|-.+|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~-~--~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP-K--RWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT-T--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC-C--cHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 347999999999999999994 1 134565555 689999999877665
No 35
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=28.46 E-value=1.3e+02 Score=21.79 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=40.2
Q ss_pred CCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhcccC
Q 017799 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYR 316 (365)
Q Consensus 255 ~~~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~~~~ 316 (365)
..++.|.+.|.+-....-.+. +.- ...+...+.++...-|||..+|+-=.|.-|..-++
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F-~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr 64 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKF-ETQ--KYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 64 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHH-HHC--SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHH-HcC--CCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCC
Confidence 447889999987444333333 322 45566667677777889999999999987765433
No 36
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=24.00 E-value=1.6e+02 Score=23.15 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=33.5
Q ss_pred cccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 017799 261 MRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY 310 (365)
Q Consensus 261 lrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 310 (365)
-.||+|=.++++++|+..|. ..=+.|-+.| +|-|..+++.+-.+|
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLM--ITRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHT--TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhc--CCCCHHHHHHHHHHH
Confidence 47999999999999999993 1234555555 478888887665544
No 37
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=23.67 E-value=2.1e+02 Score=24.02 Aligned_cols=54 Identities=28% Similarity=0.242 Sum_probs=40.7
Q ss_pred CCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhc--CCCCCCHHHHHHHhhhhhhcc
Q 017799 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM--KVEGLTIYHVKSHLQKYRTAR 314 (365)
Q Consensus 255 ~~~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM--~v~gLT~~hVkSHLQKYR~~~ 314 (365)
..++.|-.||+|=-+..+++|+++|. . .=+.|++.+ ..+|-|-.++|. |||...
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g--~W~~I~~~~~~~~~~RT~vdlKd---RWrnll 81 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGT-G--RWRDVKFRAFENVHHRTYVDLKD---KWKTLV 81 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSS-S--CHHHHHHHHHSSSCCCCHHHHHH---HHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-C--ChHHHHHHhccccCCCCHHHHHH---HHHHHH
Confidence 34788999999999999999999992 1 234666654 248999999995 455544
No 38
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=22.34 E-value=2.3e+02 Score=23.00 Aligned_cols=47 Identities=28% Similarity=0.374 Sum_probs=36.5
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhcc
Q 017799 262 RWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR 314 (365)
Q Consensus 262 rWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~~ 314 (365)
.||+|=.+.++++|.++|+. =..|-+. ++|-|-.+|+.|...|-..+
T Consensus 56 ~Wt~eEd~~L~~~~~~~G~~----W~~Ia~~--l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 56 AWTPEEDETIFRNYLKLGSK----WSVIAKL--IPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp CCCHHHHHHHHHHHHHSCSC----HHHHTTT--STTCCHHHHHHHHHHTTGGG
T ss_pred CCCHHHHHHHHHHHHHHCcC----HHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence 69999999999999999952 3445444 57999999999876665433
No 39
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=22.17 E-value=1.9e+02 Score=22.02 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=36.3
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhh
Q 017799 257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQ 308 (365)
Q Consensus 257 ~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQ 308 (365)
...|=.||+|=-+..+++|.++|- + =+.|-+.| |-|-.+||.+..
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G~--k--W~~IA~~l---gRt~~q~knRw~ 64 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHGN--D--WATIGAAL---GRSASSVKDRCR 64 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHSS--C--HHHHHHHH---TSCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC--C--HHHHHHHh---CCCHHHHHHHHH
Confidence 345568999999999999999993 2 56777777 899999998754
No 40
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=21.69 E-value=2.2e+02 Score=22.96 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=36.2
Q ss_pred CCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 017799 258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYR 311 (365)
Q Consensus 258 K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 311 (365)
..+-.||+|=.++++++|+.+|. . .=+.|-+.| +|-|..+++.|-.+|-
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~-~--~W~~Ia~~l--~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGP-K--RWSDIAKHL--KGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCS-C--CHHHHHHHS--SSCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC-C--CHHHHHHHh--cCCcHHHHHHHHHHhc
Confidence 34557999999999999999993 1 123555554 6899999987766553
No 41
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=21.28 E-value=2.1e+02 Score=22.34 Aligned_cols=46 Identities=24% Similarity=0.203 Sum_probs=34.3
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChHHHHhhcC--CCCCCHHHHHHHhhhh
Q 017799 262 RWTPELHEAFVEAVNQLGGSERATPKGVLKLMK--VEGLTIYHVKSHLQKY 310 (365)
Q Consensus 262 rWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~--v~gLT~~hVkSHLQKY 310 (365)
.||+|=.+..+++|+++|. . .=+.|++... ++|-|-.++|.+-..+
T Consensus 2 ~WT~eEd~~L~~gv~k~G~-g--~W~~I~~~~~~~~~~RT~~~lKdrWrnl 49 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGT-G--RWRDVKMRAFDNADHRTYVDLKDKWKTL 49 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCS-S--CHHHHHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCC-C--CcHHHHHhhccccCCCCHHHHHHHHHHH
Confidence 4999999999999999993 1 2345666422 5899999999764443
No 42
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=21.10 E-value=2e+02 Score=23.17 Aligned_cols=44 Identities=30% Similarity=0.400 Sum_probs=34.3
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhh
Q 017799 260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQK 309 (365)
Q Consensus 260 RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQK 309 (365)
+-.||+|=.+.++++|.++|. .=..|-+. ++|-|-.+||.|...
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~--l~gRt~~~~k~r~~~ 122 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGN----RWAEIAKL--LPGRTDNAVKNHWNS 122 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS----CHHHHGGG--STTCCHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHCc----CHHHHHHH--CCCCCHHHHHHHHHH
Confidence 346999999999999999993 12345554 489999999988654
No 43
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.39 E-value=2.7e+02 Score=20.65 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=40.9
Q ss_pred CCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhcccCCC
Q 017799 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPD 318 (365)
Q Consensus 255 ~~~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~~~~~~ 318 (365)
..++.|.++|.+-......+... - ...++..+.+|...-|||..+|+-=.|.-|..-++..
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~-~--~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEK-Q--KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHH-C--SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh-c--CCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 44678888888644433333333 2 3556666666767778999999999998887655544
No 44
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.16 E-value=2.5e+02 Score=20.21 Aligned_cols=61 Identities=21% Similarity=0.138 Sum_probs=41.4
Q ss_pred CCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhcccCCC
Q 017799 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPD 318 (365)
Q Consensus 255 ~~~K~RlrWT~eLH~rFV~Av~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR~~~~~~~ 318 (365)
..+++|-+.|.+-... ++++.+.- ...+...+.++...-|||..+|+-=.|.-|...++..
T Consensus 6 ~~rr~Rt~ft~~Q~~~-Le~~F~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAA-LQRRFQKT--QYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCSSCSSCHHHHHH-HHHHHTTC--SSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCHHHHHH-HHHHHcCC--CCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 4478888888864443 33333322 3555666667777789999999999998887655544
Done!