Query 017800
Match_columns 365
No_of_seqs 430 out of 3281
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:32:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-32 2.9E-37 288.3 16.9 272 5-279 282-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1E-28 2.2E-33 259.0 18.8 272 5-279 258-588 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.7E-26 3.6E-31 213.6 4.3 251 5-258 100-384 (873)
4 KOG4194 Membrane glycoprotein 99.9 1E-24 2.2E-29 201.9 4.6 252 6-279 148-456 (873)
5 KOG0444 Cytoskeletal regulator 99.9 2.2E-23 4.7E-28 194.6 -1.2 268 6-280 54-380 (1255)
6 KOG0444 Cytoskeletal regulator 99.8 4.3E-23 9.4E-28 192.6 -2.3 244 6-257 6-285 (1255)
7 KOG0472 Leucine-rich repeat pr 99.8 3.1E-22 6.8E-27 178.1 -4.1 145 8-161 138-297 (565)
8 KOG0472 Leucine-rich repeat pr 99.8 2.2E-22 4.7E-27 179.1 -7.5 234 9-274 47-309 (565)
9 KOG4237 Extracellular matrix p 99.8 6.9E-21 1.5E-25 169.2 -3.7 257 8-280 68-364 (498)
10 PRK15370 E3 ubiquitin-protein 99.8 1.7E-18 3.6E-23 173.0 9.8 206 7-256 178-404 (754)
11 PRK15387 E3 ubiquitin-protein 99.8 1.2E-17 2.7E-22 166.1 14.5 221 9-257 203-463 (788)
12 PRK15387 E3 ubiquitin-protein 99.7 1.9E-17 4.2E-22 164.7 12.5 208 6-242 241-458 (788)
13 PRK15370 E3 ubiquitin-protein 99.7 1.6E-17 3.5E-22 166.0 11.1 193 7-242 199-401 (754)
14 KOG0617 Ras suppressor protein 99.7 6.2E-19 1.3E-23 140.3 -2.9 153 39-242 33-186 (264)
15 KOG0617 Ras suppressor protein 99.7 5.7E-19 1.2E-23 140.4 -3.2 165 4-228 30-195 (264)
16 PLN03210 Resistant to P. syrin 99.7 7.1E-16 1.5E-20 163.5 18.5 228 6-242 610-883 (1153)
17 PLN03210 Resistant to P. syrin 99.7 8.7E-16 1.9E-20 162.8 18.0 145 5-154 556-721 (1153)
18 KOG0618 Serine/threonine phosp 99.7 3E-18 6.6E-23 166.8 -1.8 262 5-274 197-488 (1081)
19 KOG0618 Serine/threonine phosp 99.6 6.5E-18 1.4E-22 164.5 -2.9 228 7-240 219-487 (1081)
20 cd00116 LRR_RI Leucine-rich re 99.6 5.3E-17 1.1E-21 149.3 2.2 112 40-151 52-179 (319)
21 cd00116 LRR_RI Leucine-rich re 99.6 1.6E-16 3.5E-21 146.1 4.5 147 5-153 21-209 (319)
22 KOG4237 Extracellular matrix p 99.6 5.3E-17 1.2E-21 144.7 -3.6 211 5-242 89-359 (498)
23 PLN03150 hypothetical protein; 99.5 1.6E-14 3.5E-19 143.6 9.7 118 112-285 419-538 (623)
24 PLN03150 hypothetical protein; 99.4 1.1E-12 2.5E-17 130.5 7.9 107 41-149 420-527 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 5.8E-14 1.3E-18 130.8 -4.0 170 42-242 78-247 (722)
26 COG4886 Leucine-rich repeat (L 99.2 6.3E-12 1.4E-16 119.2 4.6 172 39-242 116-290 (394)
27 KOG1909 Ran GTPase-activating 99.2 1.4E-12 3E-17 115.1 -0.0 148 5-152 28-228 (382)
28 KOG0532 Leucine-rich repeat (L 99.2 9E-13 1.9E-17 123.0 -4.1 147 6-162 74-234 (722)
29 COG4886 Leucine-rich repeat (L 99.2 2.1E-11 4.7E-16 115.6 4.4 187 43-258 97-296 (394)
30 PF14580 LRR_9: Leucine-rich r 99.1 5.1E-11 1.1E-15 98.4 4.9 107 40-152 20-128 (175)
31 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.5E-16 112.3 0.9 199 5-242 119-339 (505)
32 KOG1259 Nischarin, modulator o 99.1 9.7E-12 2.1E-16 107.8 0.1 83 62-150 283-365 (490)
33 PF14580 LRR_9: Leucine-rich r 99.1 7.8E-11 1.7E-15 97.3 3.8 126 5-144 17-147 (175)
34 KOG1259 Nischarin, modulator o 99.1 3.6E-11 7.8E-16 104.4 1.3 66 82-152 279-344 (490)
35 KOG3207 Beta-tubulin folding c 99.1 1.5E-11 3.3E-16 111.5 -1.0 146 5-151 144-315 (505)
36 KOG1909 Ran GTPase-activating 99.0 1.5E-11 3.2E-16 108.7 -1.8 194 5-241 90-310 (382)
37 PF13855 LRR_8: Leucine rich r 99.0 2E-10 4.3E-15 78.2 3.4 60 40-99 2-61 (61)
38 PF13855 LRR_8: Leucine rich r 99.0 2.3E-10 5E-15 77.9 2.8 61 63-123 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.9 3.5E-10 7.5E-15 107.8 1.1 172 39-242 95-268 (414)
40 KOG1859 Leucine-rich repeat pr 98.7 5.9E-10 1.3E-14 107.2 -4.1 105 39-152 164-269 (1096)
41 KOG0531 Protein phosphatase 1, 98.6 1.3E-08 2.8E-13 97.1 1.4 171 39-242 72-245 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.4 1.5E-07 3.2E-12 96.6 4.2 107 39-148 545-653 (889)
43 COG5238 RNA1 Ran GTPase-activa 98.4 9.2E-08 2E-12 82.4 1.6 143 6-152 29-229 (388)
44 KOG1859 Leucine-rich repeat pr 98.3 1.1E-08 2.4E-13 98.7 -7.7 113 8-123 165-291 (1096)
45 KOG4579 Leucine-rich repeat (L 98.3 3E-08 6.4E-13 76.7 -4.3 103 42-150 30-136 (177)
46 KOG4579 Leucine-rich repeat (L 98.2 1.7E-08 3.6E-13 78.1 -6.2 133 8-154 28-163 (177)
47 PF12799 LRR_4: Leucine Rich r 98.1 1.3E-06 2.9E-11 54.6 2.0 37 205-242 1-37 (44)
48 PF12799 LRR_4: Leucine Rich r 98.1 2.4E-06 5.1E-11 53.5 2.8 35 65-100 3-37 (44)
49 KOG2120 SCF ubiquitin ligase, 98.1 3.2E-08 7E-13 86.2 -8.0 37 204-240 312-349 (419)
50 COG5238 RNA1 Ran GTPase-activa 98.0 7.4E-06 1.6E-10 70.9 4.7 182 41-242 32-255 (388)
51 KOG4658 Apoptotic ATPase [Sign 97.9 5E-06 1.1E-10 85.5 2.8 136 7-145 523-676 (889)
52 KOG1644 U2-associated snRNP A' 97.8 3.2E-05 7E-10 64.1 5.5 107 40-148 43-151 (233)
53 PRK15386 type III secretion pr 97.8 5.9E-05 1.3E-09 70.3 7.6 45 206-251 178-228 (426)
54 KOG2982 Uncharacterized conser 97.8 1.2E-05 2.6E-10 70.4 2.7 86 62-148 70-157 (418)
55 PRK15386 type III secretion pr 97.7 0.00012 2.6E-09 68.2 7.9 122 6-148 51-188 (426)
56 KOG2982 Uncharacterized conser 97.7 1.1E-05 2.3E-10 70.7 0.1 85 39-123 71-158 (418)
57 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.4E-09 61.0 5.8 106 42-151 22-127 (233)
58 KOG2120 SCF ubiquitin ligase, 97.6 3.1E-06 6.7E-11 74.1 -3.4 140 6-147 209-373 (419)
59 KOG3665 ZYG-1-like serine/thre 97.6 2.4E-05 5.2E-10 78.6 1.2 114 39-156 148-269 (699)
60 KOG3665 ZYG-1-like serine/thre 97.5 7E-05 1.5E-09 75.3 3.0 118 7-127 122-266 (699)
61 KOG2739 Leucine-rich acidic nu 97.0 0.00045 9.8E-09 59.7 3.0 93 55-151 35-130 (260)
62 PF13306 LRR_5: Leucine rich r 97.0 0.0043 9.4E-08 48.5 7.9 100 40-146 13-112 (129)
63 PF13306 LRR_5: Leucine rich r 96.8 0.0089 1.9E-07 46.7 8.4 87 56-147 5-91 (129)
64 KOG2739 Leucine-rich acidic nu 96.8 0.00076 1.6E-08 58.3 2.1 100 42-145 46-151 (260)
65 KOG2123 Uncharacterized conser 96.8 3.7E-05 8E-10 66.9 -5.9 63 61-125 39-102 (388)
66 KOG2123 Uncharacterized conser 96.8 3.9E-05 8.5E-10 66.7 -5.8 105 62-171 18-126 (388)
67 PF00560 LRR_1: Leucine Rich R 96.4 0.0013 2.8E-08 34.3 0.8 22 206-228 1-22 (22)
68 PF00560 LRR_1: Leucine Rich R 96.3 0.0016 3.4E-08 33.9 0.8 19 41-60 2-20 (22)
69 KOG4308 LRR-containing protein 95.5 7.1E-05 1.5E-09 72.0 -11.8 164 39-242 115-303 (478)
70 KOG4308 LRR-containing protein 94.2 0.00035 7.7E-09 67.3 -10.8 173 41-252 89-303 (478)
71 PF13504 LRR_7: Leucine rich r 93.6 0.05 1.1E-06 26.2 1.4 13 8-20 2-14 (17)
72 KOG0473 Leucine-rich repeat pr 92.5 0.0022 4.8E-08 54.6 -7.2 81 63-148 42-122 (326)
73 PF13516 LRR_6: Leucine Rich r 91.9 0.035 7.6E-07 29.4 -0.5 22 205-226 2-23 (24)
74 smart00369 LRR_TYP Leucine-ric 91.7 0.16 3.5E-06 27.3 2.1 15 87-101 2-16 (26)
75 smart00370 LRR Leucine-rich re 91.7 0.16 3.5E-06 27.3 2.1 15 87-101 2-16 (26)
76 smart00370 LRR Leucine-rich re 90.8 0.21 4.5E-06 26.9 1.9 15 63-77 2-16 (26)
77 smart00369 LRR_TYP Leucine-ric 90.8 0.21 4.5E-06 26.9 1.9 15 63-77 2-16 (26)
78 KOG0473 Leucine-rich repeat pr 90.5 0.0051 1.1E-07 52.5 -7.0 83 39-124 42-124 (326)
79 smart00365 LRR_SD22 Leucine-ri 84.5 0.83 1.8E-05 24.7 1.7 15 7-21 2-16 (26)
80 KOG3864 Uncharacterized conser 84.4 0.27 5.8E-06 41.3 -0.3 35 204-238 150-185 (221)
81 KOG4341 F-box protein containi 82.3 0.35 7.6E-06 45.1 -0.4 108 39-148 320-437 (483)
82 PF08693 SKG6: Transmembrane a 82.3 1.7 3.6E-05 26.2 2.6 10 311-320 11-20 (40)
83 KOG1947 Leucine rich repeat pr 80.6 0.29 6.4E-06 47.3 -1.7 110 39-149 188-307 (482)
84 KOG1947 Leucine rich repeat pr 79.9 0.68 1.5E-05 44.7 0.6 85 39-123 214-307 (482)
85 smart00368 LRR_RI Leucine rich 78.5 1.8 3.8E-05 23.8 1.7 13 8-20 3-15 (28)
86 KOG4242 Predicted myosin-I-bin 77.3 7.9 0.00017 37.0 6.6 17 8-24 215-231 (553)
87 PF04478 Mid2: Mid2 like cell 77.0 2.8 6.1E-05 33.4 3.1 14 319-332 60-73 (154)
88 smart00364 LRR_BAC Leucine-ric 76.5 1.9 4.1E-05 23.3 1.4 12 65-76 4-15 (26)
89 KOG3864 Uncharacterized conser 75.4 0.74 1.6E-05 38.8 -0.5 80 87-168 101-182 (221)
90 KOG4341 F-box protein containi 64.0 2.8 6.1E-05 39.3 0.6 119 5-123 292-438 (483)
91 PF01034 Syndecan: Syndecan do 58.0 3.6 7.7E-05 27.5 0.1 15 318-332 19-33 (64)
92 PTZ00382 Variant-specific surf 51.6 9.5 0.00021 28.1 1.5 19 311-329 67-85 (96)
93 KOG3763 mRNA export factor TAP 50.1 8.4 0.00018 37.6 1.3 37 39-77 244-284 (585)
94 KOG3763 mRNA export factor TAP 47.1 11 0.00025 36.7 1.7 77 39-117 218-307 (585)
95 TIGR00864 PCC polycystin catio 38.5 16 0.00036 42.6 1.5 32 211-242 1-32 (2740)
96 PF04478 Mid2: Mid2 like cell 37.4 17 0.00038 29.1 1.1 22 312-333 49-70 (154)
97 PF03302 VSP: Giardia variant- 37.1 17 0.00036 34.6 1.1 22 310-331 367-388 (397)
98 smart00367 LRR_CC Leucine-rich 34.4 27 0.00059 18.4 1.3 10 8-17 3-12 (26)
99 TIGR00864 PCC polycystin catio 34.1 27 0.00059 41.0 2.3 33 69-101 1-33 (2740)
100 PF12191 stn_TNFRSF12A: Tumour 32.5 26 0.00057 27.0 1.3 16 319-334 88-103 (129)
101 PF01299 Lamp: Lysosome-associ 32.0 6.1 0.00013 36.1 -2.6 16 327-342 290-305 (306)
102 PF01102 Glycophorin_A: Glycop 31.8 4.4 9.5E-05 31.3 -3.0 6 319-324 71-76 (122)
103 PF14991 MLANA: Protein melan- 31.2 15 0.00033 27.6 -0.1 12 335-346 48-59 (118)
104 PF02208 Sorb: Sorbin homologo 29.6 27 0.00058 21.5 0.8 15 334-348 23-37 (47)
105 PF14610 DUF4448: Protein of u 26.5 38 0.00083 28.4 1.5 24 309-332 156-179 (189)
106 KOG4242 Predicted myosin-I-bin 24.0 55 0.0012 31.6 2.1 93 7-99 165-280 (553)
107 PF02480 Herpes_gE: Alphaherpe 22.7 28 0.00062 33.5 0.0 10 332-341 377-386 (439)
108 COG3105 Uncharacterized protei 21.8 8.6 0.00019 29.6 -2.9 20 310-333 8-27 (138)
109 PF07204 Orthoreo_P10: Orthore 21.8 33 0.00071 24.9 0.2 13 309-321 41-53 (98)
110 PF11770 GAPT: GRB2-binding ad 21.0 13 0.00029 29.5 -2.1 10 341-350 44-53 (158)
111 smart00459 Sorb Sorbin homolog 20.8 53 0.0011 20.7 0.9 15 336-350 28-42 (50)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-32 Score=288.32 Aligned_cols=272 Identities=25% Similarity=0.368 Sum_probs=203.4
Q ss_pred cCCcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEE
Q 017800 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 68 (365)
++++|++|++++|.+++.+| ..+++|+.|++++| ++|+.|++++|.+++.+|..++.+.+|+.|
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 361 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361 (968)
T ss_pred hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEE
Confidence 56788888888888888777 56788888888887 578888888888888888888888888888
Q ss_pred EccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCc
Q 017800 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (365)
Q Consensus 69 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~ 148 (365)
++++|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+ ..+++|+.|++++|.
T Consensus 362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF--TKLPLVYFLDISNNN 439 (968)
T ss_pred ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH--hcCCCCCEEECcCCc
Confidence 888888888888877777788888888888877777777777888888888887777777665 677777777777777
Q ss_pred ccCccchhhhhhhhhhcccCCCcccc--------------------cccCCCC-----CCCccceEEEEEeccccc---h
Q 017800 149 FTGVLLTGYLDNFKAMMHGNNISVEV--------------------DYMTPLN-----SSNYYESIILTIKGIDIK---M 200 (365)
Q Consensus 149 l~~~~~~~~~~~l~~L~~l~~~~~~~--------------------~~~~~~~-----~~~~~~~~~~~~~~~~~~---~ 200 (365)
+++.+|.. +..+++|+.+++..... +.+.... ....+..+.+..+.+... .
T Consensus 440 l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 518 (968)
T PLN00113 440 LQGRINSR-KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518 (968)
T ss_pred ccCccChh-hccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH
Confidence 77766543 34444444443311110 0111000 011233444444444333 2
Q ss_pred hhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc--------------EEECccCccccCCCCCCCCCCCCC
Q 017800 201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT--------------VLNLSYNQFEGPIPRGSQFNTFPN 266 (365)
Q Consensus 201 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~--------------~L~ls~N~l~g~~p~~~~~~~~~~ 266 (365)
+..+++|++|+|++|.+++.+|..++.+++|+.|+|++|+++ .+++++|+++|.+|...++.++..
T Consensus 519 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~ 598 (968)
T PLN00113 519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINA 598 (968)
T ss_pred HcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccCh
Confidence 334678899999999999999999999999999999999876 899999999999999999999999
Q ss_pred CccCCCCCCCCcC
Q 017800 267 DSYVGNSGLCGFP 279 (365)
Q Consensus 267 ~~~~~n~~lc~~~ 279 (365)
.++.||+.+||.+
T Consensus 599 ~~~~~n~~lc~~~ 611 (968)
T PLN00113 599 SAVAGNIDLCGGD 611 (968)
T ss_pred hhhcCCccccCCc
Confidence 9999999999865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1e-28 Score=259.05 Aligned_cols=272 Identities=28% Similarity=0.365 Sum_probs=222.9
Q ss_pred cCCcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEE
Q 017800 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 68 (365)
++++|+.|++++|.+++..| ..+++|++|++++| ++|++|++++|.+++.+|..+..+++|+.|
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence 67899999999999999887 66889999999998 689999999999999999999999999999
Q ss_pred EccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCc
Q 017800 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (365)
Q Consensus 69 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~ 148 (365)
++++|.+++.+|..++.+++|+.|++++|++++.+|.++..+++|+.|++++|.+.+.+|..+ ..+++|+.|++++|.
T Consensus 338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQDNS 415 (968)
T ss_pred ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECcCCE
Confidence 999999999999999999999999999999999999999999999999999999999999877 889999999999999
Q ss_pred ccCccchhhhhhhhhhcccCCCccccccc-----CCCCC--------------------CCccceEEEEEecccc---ch
Q 017800 149 FTGVLLTGYLDNFKAMMHGNNISVEVDYM-----TPLNS--------------------SNYYESIILTIKGIDI---KM 200 (365)
Q Consensus 149 l~~~~~~~~~~~l~~L~~l~~~~~~~~~~-----~~~~~--------------------~~~~~~~~~~~~~~~~---~~ 200 (365)
+++.+|.. +..++.|..+++........ ...+. ...+..+++..+.+.. ..
T Consensus 416 l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~ 494 (968)
T PLN00113 416 FSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK 494 (968)
T ss_pred eeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChh
Confidence 99988866 77788777666532211100 00000 0123334444444432 23
Q ss_pred hhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc--------------EEECccCccccCCCCCC-CCCCCC
Q 017800 201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT--------------VLNLSYNQFEGPIPRGS-QFNTFP 265 (365)
Q Consensus 201 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~--------------~L~ls~N~l~g~~p~~~-~~~~~~ 265 (365)
+..+++|+.|+|++|++++.+|+.++.+++|++|+|++|+++ .||+++|+++|.+|... .+..+.
T Consensus 495 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 574 (968)
T PLN00113 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574 (968)
T ss_pred hhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence 445788999999999999999999999999999999999876 89999999999999753 344455
Q ss_pred CCccCCCCCCCCcC
Q 017800 266 NDSYVGNSGLCGFP 279 (365)
Q Consensus 266 ~~~~~~n~~lc~~~ 279 (365)
...+.+|+..+..|
T Consensus 575 ~l~ls~N~l~~~~p 588 (968)
T PLN00113 575 QVNISHNHLHGSLP 588 (968)
T ss_pred EEeccCCcceeeCC
Confidence 66677777665443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.7e-26 Score=213.59 Aligned_cols=251 Identities=25% Similarity=0.267 Sum_probs=182.8
Q ss_pred cCCcccEEEccCCCCCCcCC--CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEE
Q 017800 5 GIATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~--~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 69 (365)
++++|+.+++.+|.++.++. ....+|+.|+|.+| +.|+.||||.|.|+...-.+|..-.++++|+
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence 67788888888888877655 44556888888888 6788889999988844445677777889999
Q ss_pred ccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcc
Q 017800 70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (365)
Q Consensus 70 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l 149 (365)
|++|.|+..-.+.|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|+|. +.+...|.++++|+.|.|..|.+
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir--ive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR--IVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee--eehhhhhcCchhhhhhhhhhcCc
Confidence 9999998777788888889999999999998866678888999999999998883 44555668888888888888888
Q ss_pred cCccchhhhhhhhhhcccCCCccccccc--CCCCCCCccceEEEEE---eccccchhhhhhheeeEEcCCCccccCCChh
Q 017800 150 TGVLLTGYLDNFKAMMHGNNISVEVDYM--TPLNSSNYYESIILTI---KGIDIKMERILTIFMTIDLSSNKFQGGIPEV 224 (365)
Q Consensus 150 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 224 (365)
+..-. +.|..+.++..+++..+....+ +.+.....+.-++++. ..+..+....+++|+.|||++|+|+...+++
T Consensus 258 ~kL~D-G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~s 336 (873)
T KOG4194|consen 258 SKLDD-GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGS 336 (873)
T ss_pred ccccC-cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhH
Confidence 75433 3366667666665522221111 1111222233333333 3344444455788899999999999888888
Q ss_pred hhcccccccccCcCCCcc--------------EEECccCccccCCCCC
Q 017800 225 VGKLNLLKGLNISHNNLT--------------VLNLSYNQFEGPIPRG 258 (365)
Q Consensus 225 l~~l~~L~~L~Ls~N~L~--------------~L~ls~N~l~g~~p~~ 258 (365)
|..+..|++|+|++|.++ .|||++|.+++.|..+
T Consensus 337 f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 337 FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence 888899999999999876 7888888888777653
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1e-24 Score=201.86 Aligned_cols=252 Identities=24% Similarity=0.218 Sum_probs=158.9
Q ss_pred CCcccEEEccCCCCCCcCCC---CCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEE
Q 017800 6 IATLYYLDLSNNFLTNIEYF---PPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~~---~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 69 (365)
++.|+.||||.|.|+.+... .-.++++|+|++| .+|..|.|+.|.++...+..|.++++|+.|+
T Consensus 148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 56788889999988877652 2347888888888 5677888888888866666777788888888
Q ss_pred ccCCcCccCCCccCc------------------------CCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeecccccc
Q 017800 70 LNGNRLEGPLPPSLV------------------------NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125 (365)
Q Consensus 70 L~~N~l~~~~p~~l~------------------------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 125 (365)
|..|+|.-.---.|. .|.++++|+|+.|+++..-..|+.++++|+.|++++|.|..
T Consensus 228 LnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 228 LNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR 307 (873)
T ss_pred ccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe
Confidence 877777632223344 44555555555555555444555555555555555555554
Q ss_pred ccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhh
Q 017800 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILT 205 (365)
Q Consensus 126 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (365)
..++.. ...++|+.|||++|.|+...+.+ +..+..|..+++.. .++..+....+..++
T Consensus 308 ih~d~W--sftqkL~~LdLs~N~i~~l~~~s-f~~L~~Le~LnLs~-------------------Nsi~~l~e~af~~ls 365 (873)
T KOG4194|consen 308 IHIDSW--SFTQKLKELDLSSNRITRLDEGS-FRVLSQLEELNLSH-------------------NSIDHLAEGAFVGLS 365 (873)
T ss_pred eecchh--hhcccceeEeccccccccCChhH-HHHHHHhhhhcccc-------------------cchHHHHhhHHHHhh
Confidence 444444 34455566666666555443333 44444444433311 122223344556688
Q ss_pred heeeEEcCCCccccCC---ChhhhcccccccccCcCCCcc--------------EEECccCccccCCCCCCCCCCCCCCc
Q 017800 206 IFMTIDLSSNKFQGGI---PEVVGKLNLLKGLNISHNNLT--------------VLNLSYNQFEGPIPRGSQFNTFPNDS 268 (365)
Q Consensus 206 ~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~Ls~N~L~--------------~L~ls~N~l~g~~p~~~~~~~~~~~~ 268 (365)
+|+.|||++|.|+..| ...|..+++|+.|+|.+|+|. .|||.+|.+-.+-|..-.--.++..-
T Consensus 366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv 445 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELV 445 (873)
T ss_pred hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhh
Confidence 8888888888888654 445777888888888888876 78888888876555532222445555
Q ss_pred cCCCCCCCCcC
Q 017800 269 YVGNSGLCGFP 279 (365)
Q Consensus 269 ~~~n~~lc~~~ 279 (365)
+..-.++|+|.
T Consensus 446 ~nSssflCDCq 456 (873)
T KOG4194|consen 446 MNSSSFLCDCQ 456 (873)
T ss_pred hcccceEEecc
Confidence 56666788764
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=2.2e-23 Score=194.61 Aligned_cols=268 Identities=21% Similarity=0.235 Sum_probs=159.9
Q ss_pred CCcccEEEccCCCCCCcCC--CCCCCCcEEECCCC--------------CCCCEEEccCCcCcccCCcCccCCCCcCEEE
Q 017800 6 IATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~--~~~~~L~~L~ls~N--------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 69 (365)
+.+|++|.+++|++..+.. ..++.|+.+++..| ..|++||||+|++. +.|..+....++..|+
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLN 132 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEE
Confidence 4556666666666665544 55566666666655 56777788888877 7777777777777888
Q ss_pred ccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcc
Q 017800 70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (365)
Q Consensus 70 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l 149 (365)
||+|+|..+...-|.+++.|-+||||+|++.. +|..+..+..|++|.|++|.+...--..+ ..+++|++|++++.+-
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL--PsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQL--PSMTSLSVLHMSNTQR 209 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcC--ccchhhhhhhcccccc
Confidence 88888774333345677777788888888765 66677777778888887776632211111 2344445555554432
Q ss_pred c-CccchhhhhhhhhhcccCCCcccccccCCCC-CCCccceEEEEEeccccc--hhhhhhheeeEEcCCCccccCCChhh
Q 017800 150 T-GVLLTGYLDNFKAMMHGNNISVEVDYMTPLN-SSNYYESIILTIKGIDIK--MERILTIFMTIDLSSNKFQGGIPEVV 225 (365)
Q Consensus 150 ~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~l 225 (365)
+ ..+|.+ +..+.+|...+...++...+.... ....+..+.++.+.+..- ......+|++|+||.|+++ ..|+++
T Consensus 210 Tl~N~Pts-ld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~av 287 (1255)
T KOG0444|consen 210 TLDNIPTS-LDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAV 287 (1255)
T ss_pred hhhcCCCc-hhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHH
Confidence 2 123333 444444444433111111111000 111223333333332211 1123667888888888888 788888
Q ss_pred hcccccccccCcCCCcc--------------------------------------EEECccCccccCCCCCCC-CCCCCC
Q 017800 226 GKLNLLKGLNISHNNLT--------------------------------------VLNLSYNQFEGPIPRGSQ-FNTFPN 266 (365)
Q Consensus 226 ~~l~~L~~L~Ls~N~L~--------------------------------------~L~ls~N~l~g~~p~~~~-~~~~~~ 266 (365)
+.+++|+.|.+.+|+|+ .|.|++|++- +.|.+.+ +..+..
T Consensus 288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~v 366 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKV 366 (1255)
T ss_pred hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcce
Confidence 88888888888888776 5677777765 4555543 344566
Q ss_pred CccCCCCCCCCcCC
Q 017800 267 DSYVGNSGLCGFPL 280 (365)
Q Consensus 267 ~~~~~n~~lc~~~~ 280 (365)
.+...||.+.-+|-
T Consensus 367 LDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 367 LDLRENPNLVMPPK 380 (1255)
T ss_pred eeccCCcCccCCCC
Confidence 67777888776654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=4.3e-23 Score=192.61 Aligned_cols=244 Identities=23% Similarity=0.265 Sum_probs=134.6
Q ss_pred CCcccEEEccCCCCCCc-CC---CCCCCCcEEECCCC------------CCCCEEEccCCcCcccCCcCccCCCCcCEEE
Q 017800 6 IATLYYLDLSNNFLTNI-EY---FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~-~~---~~~~~L~~L~ls~N------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 69 (365)
++-++-.|+++|.|+|. .| ..++.++.|.|... .+|+.|.+++|++. .+-+.+..++.|+.++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 34456678888888754 33 34555555554443 45555566666555 3334445555555555
Q ss_pred ccCCcCc-cCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCc
Q 017800 70 LNGNRLE-GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (365)
Q Consensus 70 L~~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~ 148 (365)
+.+|++. .-+|..+..+..|..||||+|+++. .|..+..-+++-.|+|++|+|. .||..+ +.++..|-.||||+|.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~Ie-tIPn~l-finLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIE-TIPNSL-FINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccc-cCCchH-HHhhHhHhhhccccch
Confidence 5555553 2244445555555555555555554 4555555555555555555552 344332 2445555555555555
Q ss_pred ccCccchhhhhhhhhhcccCCCccccc--ccCCCCCCCccceEEEEEeccc----cchhhhhhheeeEEcCCCccccCCC
Q 017800 149 FTGVLLTGYLDNFKAMMHGNNISVEVD--YMTPLNSSNYYESIILTIKGID----IKMERILTIFMTIDLSSNKFQGGIP 222 (365)
Q Consensus 149 l~~~~~~~~~~~l~~L~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~p 222 (365)
+....| . +..+..|+.+.+..+... .+..+++...+..+.++..... +.....+.+|..+|||.|.+. ..|
T Consensus 162 Le~LPP-Q-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 162 LEMLPP-Q-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhhcCH-H-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 543333 2 344444444333211111 1122222222222222221111 111223788999999999998 899
Q ss_pred hhhhcccccccccCcCCCcc-------------EEECccCccccCCCC
Q 017800 223 EVVGKLNLLKGLNISHNNLT-------------VLNLSYNQFEGPIPR 257 (365)
Q Consensus 223 ~~l~~l~~L~~L~Ls~N~L~-------------~L~ls~N~l~g~~p~ 257 (365)
+.+-.+++|+.||||+|+|+ +|++|.|+++ ..|.
T Consensus 239 ecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~ 285 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPD 285 (1255)
T ss_pred HHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchH
Confidence 99999999999999999988 7899999987 3443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=3.1e-22 Score=178.06 Aligned_cols=145 Identities=29% Similarity=0.403 Sum_probs=107.1
Q ss_pred cccEEEccCCCCCCcCC--CCCCCCcEEECCCC------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCC
Q 017800 8 TLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73 (365)
Q Consensus 8 ~L~~L~Ls~N~l~~~~~--~~~~~L~~L~ls~N------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 73 (365)
.+..+|..+|+++..++ ..+..|..+++.+| +.|+.||...|-++ .+|+.++.+.+|+-|+|..|
T Consensus 138 ~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 138 DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhc
Confidence 34444444444444443 33444455555555 67888888888887 88888999999999999999
Q ss_pred cCccCCCccCcCCCCCCEEEccCCcCCCCCChhhc-CCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCc
Q 017800 74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE-ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 74 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
+|. .+| .|.+|..|.+|+++.|++.- +|.... ++++|.+||+++|++. .+|+.+ +-+.+|..||+|+|.+++.
T Consensus 217 ki~-~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklk-e~Pde~--clLrsL~rLDlSNN~is~L 290 (565)
T KOG0472|consen 217 KIR-FLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLK-EVPDEI--CLLRSLERLDLSNNDISSL 290 (565)
T ss_pred ccc-cCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeeccccccc-cCchHH--HHhhhhhhhcccCCccccC
Confidence 998 677 78888888888888888876 665554 8888889999999885 567766 7788888889998888865
Q ss_pred cchhhhhhh
Q 017800 153 LLTGYLDNF 161 (365)
Q Consensus 153 ~~~~~~~~l 161 (365)
.+ + ++++
T Consensus 291 p~-s-Lgnl 297 (565)
T KOG0472|consen 291 PY-S-LGNL 297 (565)
T ss_pred Cc-c-cccc
Confidence 44 3 5555
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=2.2e-22 Score=179.06 Aligned_cols=234 Identities=23% Similarity=0.231 Sum_probs=119.8
Q ss_pred ccEEEccCCCCCCcCC--CCCCCCcEEECCCC------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCc
Q 017800 9 LYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (365)
Q Consensus 9 L~~L~Ls~N~l~~~~~--~~~~~L~~L~ls~N------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 74 (365)
++.+++++|.++...+ ..+..|.+|++.+| ..++.++.++|+++ .+|+.++.+.+|..++.++|.
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccc
Confidence 4556666666665544 34444444444444 23444444444444 444444444444444444444
Q ss_pred CccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccc
Q 017800 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (365)
Q Consensus 75 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~ 154 (365)
+. ++|++++.+..|+.|+..+|+++. .|..+..+.+|..+++.+|++....|+.. +++.|+.||..+|-++. +|
T Consensus 126 ~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i---~m~~L~~ld~~~N~L~t-lP 199 (565)
T KOG0472|consen 126 LK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHI---AMKRLKHLDCNSNLLET-LP 199 (565)
T ss_pred ee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHH---HHHHHHhcccchhhhhc-CC
Confidence 44 344444444444444444444443 44444444444444444444433333222 24444444444444432 22
Q ss_pred hhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccc-cchhhhhhheeeEEcCCCccccCCChhhh-cccccc
Q 017800 155 TGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID-IKMERILTIFMTIDLSSNKFQGGIPEVVG-KLNLLK 232 (365)
Q Consensus 155 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~ 232 (365)
++ ++.+.+|..+.+ ..+.+. ..-|..++.|.+++++.|+|. .+|.+.+ +++++.
T Consensus 200 ~~-lg~l~~L~~LyL----------------------~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~ 255 (565)
T KOG0472|consen 200 PE-LGGLESLELLYL----------------------RRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLL 255 (565)
T ss_pred hh-hcchhhhHHHHh----------------------hhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccce
Confidence 23 344443333222 111111 011223566667777777776 5555544 677777
Q ss_pred cccCcCCCcc-------------EEECccCccccCCCCCCCCCCCCCCccCCCCC
Q 017800 233 GLNISHNNLT-------------VLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSG 274 (365)
Q Consensus 233 ~L~Ls~N~L~-------------~L~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~ 274 (365)
.|||.+|+++ .||+|+|.+++..++.+.+ .+......|||.
T Consensus 256 vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 256 VLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred eeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 7777777665 6778888888777766655 666677788875
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=6.9e-21 Score=169.20 Aligned_cols=257 Identities=22% Similarity=0.225 Sum_probs=176.7
Q ss_pred cccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccC-CcCccCCCccCcCC
Q 017800 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLVNC 86 (365)
Q Consensus 8 ~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l 86 (365)
.-+.++|..|+|+.+++..++.|..| +.|||++|+|+..-|++|.++.+|..|-+.+ |+|+....+.|+++
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~L--------RrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRL--------RRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhh--------ceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 34567888888888777777777766 8888888888888888888888887776665 88886666678888
Q ss_pred CCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcc
Q 017800 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (365)
Q Consensus 87 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~ 166 (365)
.+|+.|.+.-|++.....+.|..+++|..|.+-+|.+. .++.. .|..+.+++.+++..|.+-. ..+++.+..
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~-tf~~l~~i~tlhlA~np~ic------dCnL~wla~ 211 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKG-TFQGLAAIKTLHLAQNPFIC------DCNLPWLAD 211 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccc-cccchhccchHhhhcCcccc------ccccchhhh
Confidence 88888888888888877788888888888888888874 33331 23778888888888887421 112222111
Q ss_pred c-CCCcccc-------------cccCCCCCCCcc---ceEEE--EEe-----ccccchhhhhhheeeEEcCCCccccCCC
Q 017800 167 G-NNISVEV-------------DYMTPLNSSNYY---ESIIL--TIK-----GIDIKMERILTIFMTIDLSSNKFQGGIP 222 (365)
Q Consensus 167 l-~~~~~~~-------------~~~~~~~~~~~~---~~~~~--~~~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 222 (365)
- ....... ..+.......+. ..+.. ..+ ..+...++.+++|+.|+|++|+|+++-+
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 0 0000000 001111111111 11100 111 1123346679999999999999999999
Q ss_pred hhhhcccccccccCcCCCcc--------------EEECccCccccCCCCCCC-CCCCCCCccCCCCCCCCcCC
Q 017800 223 EVVGKLNLLKGLNISHNNLT--------------VLNLSYNQFEGPIPRGSQ-FNTFPNDSYVGNSGLCGFPL 280 (365)
Q Consensus 223 ~~l~~l~~L~~L~Ls~N~L~--------------~L~ls~N~l~g~~p~~~~-~~~~~~~~~~~n~~lc~~~~ 280 (365)
.+|.++..+++|.|..|+|. .|+|..|+|+...|-.-+ ...+......+||+.|.+.+
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence 99999999999999999986 899999999976664321 22345566789999997643
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=1.7e-18 Score=173.01 Aligned_cols=206 Identities=23% Similarity=0.294 Sum_probs=138.1
Q ss_pred CcccEEEccCCCCCCcCCCCCCCCcEEECCCC----------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCc
Q 017800 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 76 (365)
.+.+.|+++++.++.++..-.++|+.|++++| ++|+.|++++|+++ .+|..+. .+|+.|+|++|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence 35678888888888765444567888888888 57899999999988 5676554 47899999999988
Q ss_pred cCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchh
Q 017800 77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (365)
Q Consensus 77 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 156 (365)
.+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|++++ +|..+ .++|+.|++++|.++.. |..
T Consensus 255 -~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l----p~sL~~L~Ls~N~Lt~L-P~~ 322 (754)
T PRK15370 255 -ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHL----PSGITHLNVQSNSLTAL-PET 322 (754)
T ss_pred -cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccc----hhhHHHHHhcCCccccC-Ccc
Confidence 6777664 578999999999985 676553 589999999998864 45433 25788889999988853 433
Q ss_pred hhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccC
Q 017800 157 YLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI 236 (365)
Q Consensus 157 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 236 (365)
...+ |..+.... +.+. .++..+ .++|+.|++++|+|+ .+|..+. ++|+.|+|
T Consensus 323 l~~s---L~~L~Ls~---N~Lt----------------~LP~~l---~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdL 374 (754)
T PRK15370 323 LPPG---LKTLEAGE---NALT----------------SLPASL---PPELQVLDVSKNQIT-VLPETLP--PTITTLDV 374 (754)
T ss_pred cccc---ceeccccC---Cccc----------------cCChhh---cCcccEEECCCCCCC-cCChhhc--CCcCEEEC
Confidence 2333 33222211 1111 111111 246677777777776 4565442 56777777
Q ss_pred cCCCcc-----------EEECccCccccCCC
Q 017800 237 SHNNLT-----------VLNLSYNQFEGPIP 256 (365)
Q Consensus 237 s~N~L~-----------~L~ls~N~l~g~~p 256 (365)
++|+|+ .|++++|+|+ .+|
T Consensus 375 s~N~Lt~LP~~l~~sL~~LdLs~N~L~-~LP 404 (754)
T PRK15370 375 SRNALTNLPENLPAALQIMQASRNNLV-RLP 404 (754)
T ss_pred CCCcCCCCCHhHHHHHHHHhhccCCcc-cCc
Confidence 777665 5667777776 344
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=1.2e-17 Score=166.11 Aligned_cols=221 Identities=20% Similarity=0.244 Sum_probs=105.7
Q ss_pred ccEEEccCCCCCCcCCCCCCCCcEEECCCC---------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCC
Q 017800 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPL 79 (365)
Q Consensus 9 L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 79 (365)
-..||+++|.|+.+++.-..+|+.|++.+| ++|++|++++|+|+ .+|.. .++|+.|++++|.++ .+
T Consensus 203 ~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~L 277 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HL 277 (788)
T ss_pred CcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCCCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hh
Confidence 345666666666544433345666666666 45666666666666 34432 234455555555544 22
Q ss_pred CccCc-----------------CCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEE
Q 017800 80 PPSLV-----------------NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRII 142 (365)
Q Consensus 80 p~~l~-----------------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 142 (365)
|..+. ..++|+.|++++|++++ +|.. ..+|+.|++++|.+++ +|. ...+|+.|
T Consensus 278 p~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~-----lp~~Lq~L 347 (788)
T PRK15387 278 PALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT-----LPSGLQEL 347 (788)
T ss_pred hhchhhcCEEECcCCccccccccccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc-----cccccceE
Confidence 32110 12445555555555554 3321 1234445555555532 332 11467777
Q ss_pred EcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCC-CCccceEEEEEeccccchhhhhhheeeEEcCCCccccCC
Q 017800 143 DLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNS-SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGI 221 (365)
Q Consensus 143 ~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 221 (365)
++++|++++. |.. ..++..|...+ +.+..++. ...+..+.+..+.+.. ++...+.|+.|++++|+|+ .+
T Consensus 348 dLS~N~Ls~L-P~l-p~~L~~L~Ls~------N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l~s~L~~LdLS~N~Ls-sI 417 (788)
T PRK15387 348 SVSDNQLASL-PTL-PSELYKLWAYN------NRLTSLPALPSGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLT-SL 417 (788)
T ss_pred ecCCCccCCC-CCC-Ccccceehhhc------cccccCcccccccceEEecCCcccC-CCCcccCCCEEEccCCcCC-CC
Confidence 8887777753 322 33333322111 11111111 1123333443333321 2222345666666666666 34
Q ss_pred ChhhhcccccccccCcCCCcc-------------EEECccCccccCCCC
Q 017800 222 PEVVGKLNLLKGLNISHNNLT-------------VLNLSYNQFEGPIPR 257 (365)
Q Consensus 222 p~~l~~l~~L~~L~Ls~N~L~-------------~L~ls~N~l~g~~p~ 257 (365)
|.. ..+|+.|++++|+|+ .|++++|+|+|.+|.
T Consensus 418 P~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 418 PML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred Ccc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 542 234566666666655 566666666665544
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.73 E-value=1.9e-17 Score=164.69 Aligned_cols=208 Identities=20% Similarity=0.205 Sum_probs=133.5
Q ss_pred CCcccEEEccCCCCCCcCCCCCCCCcEEECCCC---------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCc
Q 017800 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 76 (365)
+++|++|++++|+|+.+ |...++|+.|++++| ++|+.|++++|+++ .+|.. .++|+.|++++|+++
T Consensus 241 p~~Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 241 PPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA 315 (788)
T ss_pred CCCCcEEEecCCccCcc-cCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-ccccc---ccccceeECCCCccc
Confidence 35666777777777654 333456677777766 45677777777777 44542 367999999999998
Q ss_pred cCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchh
Q 017800 77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (365)
Q Consensus 77 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 156 (365)
+ +|... .+|+.|++++|++++ +|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|.+++ +|..
T Consensus 316 ~-Lp~lp---~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l-----p~~L~~L~Ls~N~L~~-LP~l 380 (788)
T PRK15387 316 S-LPALP---SELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL-----PSELYKLWAYNNRLTS-LPAL 380 (788)
T ss_pred c-CCCCc---ccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC-----Ccccceehhhcccccc-Cccc
Confidence 5 55422 357777888888876 5532 2468888888888764 4431 2456677777777764 3422
Q ss_pred hhhhhhhhcccCCCcccccccCCCCC-CCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhccccccccc
Q 017800 157 YLDNFKAMMHGNNISVEVDYMTPLNS-SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 235 (365)
Q Consensus 157 ~~~~l~~L~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 235 (365)
..+ |..+++ ..+.+...+. ...+..+.++.+.+.. ++.....|+.|++++|+|+ .+|..++.+++|+.|+
T Consensus 381 -~~~---L~~LdL---s~N~Lt~LP~l~s~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 381 -PSG---LKELIV---SGNRLTSLPVLPSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 451 (788)
T ss_pred -ccc---cceEEe---cCCcccCCCCcccCCCEEEccCCcCCC-CCcchhhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence 222 333222 1112222221 1234445555444432 3333457889999999999 8899999999999999
Q ss_pred CcCCCcc
Q 017800 236 ISHNNLT 242 (365)
Q Consensus 236 Ls~N~L~ 242 (365)
|++|+|+
T Consensus 452 Ls~N~Ls 458 (788)
T PRK15387 452 LEGNPLS 458 (788)
T ss_pred CCCCCCC
Confidence 9999998
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1.6e-17 Score=165.98 Aligned_cols=193 Identities=25% Similarity=0.325 Sum_probs=141.0
Q ss_pred CcccEEEccCCCCCCcCCCCCCCCcEEECCCC----------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCc
Q 017800 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 76 (365)
++|+.|+|++|+++.++...+++|+.|++++| .+|+.|+|++|++. .+|..+. .+|+.|++++|+++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhhccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC
Confidence 46899999999999876655679999999998 57999999999998 7787664 58999999999999
Q ss_pred cCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchh
Q 017800 77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (365)
Q Consensus 77 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 156 (365)
.+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++. +|..+ .++|+.|++++|.+++ +|..
T Consensus 276 -~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l----~~sL~~L~Ls~N~Lt~-LP~~ 343 (754)
T PRK15370 276 -CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL----PPGLKTLEAGENALTS-LPAS 343 (754)
T ss_pred -ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc----cccceeccccCCcccc-CChh
Confidence 5777664 589999999999987 665443 578999999999974 55433 3689999999999886 4544
Q ss_pred hhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccC
Q 017800 157 YLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI 236 (365)
Q Consensus 157 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 236 (365)
+. ++|..+++... .+. .++.. ..+.|+.|+|++|+|+ .+|..+. ..|+.|++
T Consensus 344 l~---~sL~~L~Ls~N---~L~----------------~LP~~---lp~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdL 395 (754)
T PRK15370 344 LP---PELQVLDVSKN---QIT----------------VLPET---LPPTITTLDVSRNALT-NLPENLP--AALQIMQA 395 (754)
T ss_pred hc---CcccEEECCCC---CCC----------------cCChh---hcCCcCEEECCCCcCC-CCCHhHH--HHHHHHhh
Confidence 32 23333332111 111 11111 1346788888888888 5666554 36788888
Q ss_pred cCCCcc
Q 017800 237 SHNNLT 242 (365)
Q Consensus 237 s~N~L~ 242 (365)
++|+|+
T Consensus 396 s~N~L~ 401 (754)
T PRK15370 396 SRNNLV 401 (754)
T ss_pred ccCCcc
Confidence 888775
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=6.2e-19 Score=140.25 Aligned_cols=153 Identities=31% Similarity=0.475 Sum_probs=112.9
Q ss_pred CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEe
Q 017800 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 118 (365)
+.++.|-||+|+++ .+|+.++.+.+|+.|++++|+|+ ++|.++..+++|++|+++-|++.- .|..|+.++.|+.|||
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-CccccCCCchhhhhhc
Confidence 34466777778877 66667778888888888888887 677778888888888888888764 7777888888888888
Q ss_pred ecccccc-ccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccc
Q 017800 119 RSNRFWG-PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID 197 (365)
Q Consensus 119 ~~N~l~~-~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (365)
.+|++.. ..|..| ..+..|+.|++++|.+. .+|.+ ++.
T Consensus 110 tynnl~e~~lpgnf--f~m~tlralyl~dndfe-~lp~d-vg~------------------------------------- 148 (264)
T KOG0617|consen 110 TYNNLNENSLPGNF--FYMTTLRALYLGDNDFE-ILPPD-VGK------------------------------------- 148 (264)
T ss_pred cccccccccCCcch--hHHHHHHHHHhcCCCcc-cCChh-hhh-------------------------------------
Confidence 8877753 345444 56777777788887776 34444 443
Q ss_pred cchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 198 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
+++|+.|.+..|.+- ..|.+++.++.|++|.+++|+++
T Consensus 149 ------lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 149 ------LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ------hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 456677778888877 78888888888888888877776
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=5.7e-19 Score=140.44 Aligned_cols=165 Identities=24% Similarity=0.386 Sum_probs=137.4
Q ss_pred ccCCcccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccC
Q 017800 4 LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (365)
Q Consensus 4 ~~l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 83 (365)
+++++++.|.||+|+++.++| ....|. +|+.|++++|++. .+|.+++.+++|+.|+++-|++. .+|..|
T Consensus 30 f~~s~ITrLtLSHNKl~~vpp-nia~l~--------nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf 98 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPP-NIAELK--------NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF 98 (264)
T ss_pred cchhhhhhhhcccCceeecCC-cHHHhh--------hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc
Confidence 367888999999999998776 122222 2377789999998 88999999999999999999999 899999
Q ss_pred cCCCCCCEEEccCCcCCC-CCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhh
Q 017800 84 VNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK 162 (365)
Q Consensus 84 ~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~ 162 (365)
+.++.|+.|||.+|++.. .+|..|..+..|+.|+|++|.+. .+|... +++++|+.|.+..|.+-. +|.+ ++.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dv--g~lt~lqil~lrdndll~-lpke-ig~-- 171 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDV--GKLTNLQILSLRDNDLLS-LPKE-IGD-- 171 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhh--hhhcceeEEeeccCchhh-CcHH-HHH--
Confidence 999999999999999964 57888999999999999999994 667666 899999999999999863 4555 444
Q ss_pred hhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcc
Q 017800 163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228 (365)
Q Consensus 163 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 228 (365)
+..|++|++.+|+++ .+|.+++.+
T Consensus 172 -----------------------------------------lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 172 -----------------------------------------LTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred -----------------------------------------HHHHHHHhcccceee-ecChhhhhh
Confidence 456678889999999 778777765
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=7.1e-16 Score=163.51 Aligned_cols=228 Identities=18% Similarity=0.160 Sum_probs=125.5
Q ss_pred CCcccEEEccCCCCCCcCC--CCCCCCcEEECCCC------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEcc
Q 017800 6 IATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~--~~~~~L~~L~ls~N------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 71 (365)
+++|+.|++++|++..... ..+++|+.|+|+++ ++|+.|+|++|.....+|..++.+++|+.|+++
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 3455566666665554322 34556666666543 456666666655444566666666666666666
Q ss_pred CCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCc------------------
Q 017800 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTI------------------ 133 (365)
Q Consensus 72 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~------------------ 133 (365)
+|...+.+|..+ ++++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|..+.+
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccc
Confidence 654333455443 4556666666655443334322 235555666666543 23322100
Q ss_pred ----------cCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCC---CCccceEEEEEeccccch
Q 017800 134 ----------VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNS---SNYYESIILTIKGIDIKM 200 (365)
Q Consensus 134 ----------~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 200 (365)
...++|+.|++++|...+.+|.. +++++.|..+.+.+.. .+..++. ...+..+.+........+
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~--~L~~LP~~~~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCI--NLETLPTGINLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCC--CcCeeCCCCCccccCEEECCCCCccccc
Confidence 11246777777777766666765 6667766666552211 1111111 122333333322222223
Q ss_pred hhhhhheeeEEcCCCccccCCChhhhcccccccccCcC-CCcc
Q 017800 201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH-NNLT 242 (365)
Q Consensus 201 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~L~ 242 (365)
+....+|+.|+|++|.++ .+|.+++.+++|+.|+|++ |+|+
T Consensus 842 p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 842 PDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred cccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC
Confidence 334567889999999998 7888899999999999887 4444
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.68 E-value=8.7e-16 Score=162.84 Aligned_cols=145 Identities=17% Similarity=0.201 Sum_probs=94.4
Q ss_pred cCCcccEEEccCCCCC------CcCC----CCCCCCcEEECCCC-----------CCCCEEEccCCcCcccCCcCccCCC
Q 017800 5 GIATLYYLDLSNNFLT------NIEY----FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSC 63 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~------~~~~----~~~~~L~~L~ls~N-----------~~L~~L~Ls~N~l~~~~p~~~~~l~ 63 (365)
+|++|+.|.+..+... ...| ....+|+.|++.++ .+|+.|++++|++. .+|..+..++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccccccccCC
Confidence 6778888887665432 1222 11245777777665 56777777777776 5666677777
Q ss_pred CcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEE
Q 017800 64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143 (365)
Q Consensus 64 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 143 (365)
+|+.|+|+++...+.+| .+..+++|+.|++++|.....+|..++.+++|+.|++++|...+.+|... .+++|+.|+
T Consensus 635 ~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~ 710 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLN 710 (1153)
T ss_pred CCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEe
Confidence 77777777765444565 36677777777777776555677777777777777777765445555432 466677777
Q ss_pred cCCCcccCccc
Q 017800 144 LSHNEFTGVLL 154 (365)
Q Consensus 144 ls~N~l~~~~~ 154 (365)
+++|...+.+|
T Consensus 711 Lsgc~~L~~~p 721 (1153)
T PLN03210 711 LSGCSRLKSFP 721 (1153)
T ss_pred CCCCCCccccc
Confidence 77665444433
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=3e-18 Score=166.80 Aligned_cols=262 Identities=26% Similarity=0.331 Sum_probs=165.5
Q ss_pred cCCcccEEEccCCCCCCcCCCCCCCCcEEECCCC-----------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCC
Q 017800 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 73 (365)
.+.+|+.|....|+++.... .-++|+.|+.++| .+|+++|+++|+++ .+|.+++.+.+|+.++..+|
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~-~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N 274 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEI-SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHN 274 (1081)
T ss_pred hccchhhhhhhhcccceEEe-cCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccch
Confidence 34566667777776665443 2346777777777 67889999999998 56688899999999999999
Q ss_pred cCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCC-CCccEEEcCCCcccCc
Q 017800 74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPF-PSLRIIDLSHNEFTGV 152 (365)
Q Consensus 74 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~ls~N~l~~~ 152 (365)
+++ .+|..+...++|+.|.+..|.+.. +|.....+.+|++|+|..|++. ..|+.+ +... .+|+.|..+.|.+...
T Consensus 275 ~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~-~lp~~~-l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 275 RLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLP-SLPDNF-LAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred hHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhcccc-ccchHH-HhhhhHHHHHHhhhhcccccc
Confidence 986 778888888888888888888876 6767777888888888888874 333322 1222 2355566666655432
Q ss_pred cchhhhhhhhhhcccCCCcc--cccccCCCCCCCccceEEEEE---eccccchhhhhhheeeEEcCCCccccCCChhhhc
Q 017800 153 LLTGYLDNFKAMMHGNNISV--EVDYMTPLNSSNYYESIILTI---KGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGK 227 (365)
Q Consensus 153 ~~~~~~~~l~~L~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 227 (365)
.--+ -.....|+.+.+.++ +..-+..+..-..+..+.+.. +.++......++.|++|+||+|+++ .+|+.+..
T Consensus 351 p~~~-e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~ 428 (1081)
T KOG0618|consen 351 PSYE-ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVAN 428 (1081)
T ss_pred cccc-chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHh
Confidence 2100 111122221111000 000000111111223333333 3455556666777888888888887 77777888
Q ss_pred ccccccccCcCCCcc------------EEECccCcccc-CCCCCCCCCCCCCCccCCCCC
Q 017800 228 LNLLKGLNISHNNLT------------VLNLSYNQFEG-PIPRGSQFNTFPNDSYVGNSG 274 (365)
Q Consensus 228 l~~L~~L~Ls~N~L~------------~L~ls~N~l~g-~~p~~~~~~~~~~~~~~~n~~ 274 (365)
++.|++|....|+|. .+|+|.|+|+- .+|.......+...++.||++
T Consensus 429 ~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 888888877777654 88999999863 344433335666777888875
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=6.5e-18 Score=164.51 Aligned_cols=228 Identities=21% Similarity=0.224 Sum_probs=114.4
Q ss_pred CcccEEEccCCCCCCcCC-CCCCCCcEEECCCC------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCC
Q 017800 7 ATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~ls~N------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 73 (365)
++++.|+.++|.++...+ ....+|+++++++| .+|+.++..+|+++ .+|..+...++|++|.+..|
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhh
Confidence 455666666666654433 33445666666655 45566666666664 45555555555555555555
Q ss_pred cCccCCCccCcCCCCCCEEEccCCcCCCCCChhh-c-------------------------CCCCCcEEEeecccccccc
Q 017800 74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWL-E-------------------------ILPELQVLILRSNRFWGPI 127 (365)
Q Consensus 74 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l-~-------------------------~l~~L~~L~L~~N~l~~~~ 127 (365)
.++ .+|....++++|++|+|..|++.. +|+.+ . .++.|+.|++.+|.++...
T Consensus 298 el~-yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 298 ELE-YIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhh-hCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 555 444455555555555555555543 22111 0 1233566666666665544
Q ss_pred CCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCC-CCCccceEEEEEeccc-cchhhhhh
Q 017800 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN-SSNYYESIILTIKGID-IKMERILT 205 (365)
Q Consensus 128 ~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~ 205 (365)
-+.+ ..+++|++|+|++|.+. ..|.+.+.+++.|..+.+.++....+.... ....+..+....+.+. ..-...++
T Consensus 376 ~p~l--~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~ 452 (1081)
T KOG0618|consen 376 FPVL--VNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLP 452 (1081)
T ss_pred hhhh--ccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcC
Confidence 4434 56667777777777665 344455666666665555222211111000 0000011111111110 00122366
Q ss_pred heeeEEcCCCccccCCChhhhcccccccccCcCCC
Q 017800 206 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN 240 (365)
Q Consensus 206 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 240 (365)
.|+.+|+|.|+++...-..-..-++|++|||++|.
T Consensus 453 qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 453 QLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 77777888877774332222223677777777775
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.64 E-value=5.3e-17 Score=149.33 Aligned_cols=112 Identities=26% Similarity=0.348 Sum_probs=62.3
Q ss_pred CCCEEEccCCcCcc------cCCcCccCCCCcCEEEccCCcCccCCCccCcCCCC---CCEEEccCCcCCCC----CChh
Q 017800 40 THKVLDMRMNNFNG------KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH---LEVLNVGNNQINDN----FPNW 106 (365)
Q Consensus 40 ~L~~L~Ls~N~l~~------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~---L~~L~L~~N~l~~~----~p~~ 106 (365)
.+++|+++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+.+ |++|++++|++++. +...
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 35566666665541 23334555667777777777766544444444444 77777777766631 2223
Q ss_pred hcCC-CCCcEEEeeccccccccCCCC--CccCCCCccEEEcCCCcccC
Q 017800 107 LEIL-PELQVLILRSNRFWGPIGENT--TIVPFPSLRIIDLSHNEFTG 151 (365)
Q Consensus 107 l~~l-~~L~~L~L~~N~l~~~~~~~~--~~~~l~~L~~L~ls~N~l~~ 151 (365)
+..+ ++|+.|++++|.+++.....+ .+..+++|++|++++|.+++
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 4445 667777777776653211110 11445667777777776664
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=1.6e-16 Score=146.13 Aligned_cols=147 Identities=24% Similarity=0.240 Sum_probs=97.8
Q ss_pred cCCcccEEEccCCCCCCcC----C---CCCCCCcEEECCCC-------------------CCCCEEEccCCcCcccCCcC
Q 017800 5 GIATLYYLDLSNNFLTNIE----Y---FPPTNMTQLNFDSN-------------------LTHKVLDMRMNNFNGKIPRK 58 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~----~---~~~~~L~~L~ls~N-------------------~~L~~L~Ls~N~l~~~~p~~ 58 (365)
.+++|+.|+++++.++... + ...++++.++++.+ ++|+.|++++|.+.+..+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 3456777888887775431 1 34556777777654 47888888888887666665
Q ss_pred ccCCCC---cCEEEccCCcCcc----CCCccCcCC-CCCCEEEccCCcCCCC----CChhhcCCCCCcEEEeeccccccc
Q 017800 59 FVKSCN---LTSLNLNGNRLEG----PLPPSLVNC-HHLEVLNVGNNQINDN----FPNWLEILPELQVLILRSNRFWGP 126 (365)
Q Consensus 59 ~~~l~~---L~~L~L~~N~l~~----~~p~~l~~l-~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~ 126 (365)
+..+.+ |++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 555555 8888888888773 233345556 7888888888888742 233455677888888888887632
Q ss_pred ----cCCCCCccCCCCccEEEcCCCcccCcc
Q 017800 127 ----IGENTTIVPFPSLRIIDLSHNEFTGVL 153 (365)
Q Consensus 127 ----~~~~~~~~~l~~L~~L~ls~N~l~~~~ 153 (365)
++..+ ..+++|+.|++++|.+++..
T Consensus 181 ~~~~l~~~l--~~~~~L~~L~L~~n~i~~~~ 209 (319)
T cd00116 181 GIRALAEGL--KANCNLEVLDLNNNGLTDEG 209 (319)
T ss_pred HHHHHHHHH--HhCCCCCEEeccCCccChHH
Confidence 22222 44568888888888877543
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.58 E-value=5.3e-17 Score=144.66 Aligned_cols=211 Identities=20% Similarity=0.196 Sum_probs=151.7
Q ss_pred cCCcccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCc
Q 017800 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 84 (365)
.+++|++||||+|+|+.+.|..+..|..+ ++.+++++|+|+....+.|+++..|+.|.+.-|++.-...+.|.
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l-------~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~ 161 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFKGLASL-------LSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALR 161 (498)
T ss_pred chhhhceecccccchhhcChHhhhhhHhh-------hHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHH
Confidence 67899999999999999999777777766 35566777888866666788888888888888888877777788
Q ss_pred CCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccc------------c---------------------------
Q 017800 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW------------G--------------------------- 125 (365)
Q Consensus 85 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~------------~--------------------------- 125 (365)
.+++|..|.+-+|.+....-..|..+.+++.+.+..|.+- .
T Consensus 162 dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a 241 (498)
T KOG4237|consen 162 DLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDA 241 (498)
T ss_pred HhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccch
Confidence 8888888888888887643346777777777777666520 0
Q ss_pred --------cc---------CCC----CCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCC
Q 017800 126 --------PI---------GEN----TTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSN 184 (365)
Q Consensus 126 --------~~---------~~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 184 (365)
.. |+. ..|..+++|+.|+|++|+++++-+.. |..+..++.+.+
T Consensus 242 ~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a-Fe~~a~l~eL~L--------------- 305 (498)
T KOG4237|consen 242 RKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA-FEGAAELQELYL--------------- 305 (498)
T ss_pred hhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh-hcchhhhhhhhc---------------
Confidence 00 000 01466788888888888888765544 555555544333
Q ss_pred ccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 185 YYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
-..++..+...++..++.|+.|+|.+|+|+-..|.+|..+.+|.+|+|-.|.+-
T Consensus 306 ----~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 306 ----TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred ----CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 111223334556667888999999999999888999999999998888888664
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=1.6e-14 Score=143.56 Aligned_cols=118 Identities=32% Similarity=0.514 Sum_probs=90.5
Q ss_pred CCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEE
Q 017800 112 ELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIIL 191 (365)
Q Consensus 112 ~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (365)
.++.|+|++|.+.|.+|..+ ..+++|+.|+|++|.++|.+|.. ++.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i--~~L~~L~~L~Ls~N~l~g~iP~~-~~~------------------------------- 464 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI--SKLRHLQSINLSGNSIRGNIPPS-LGS------------------------------- 464 (623)
T ss_pred EEEEEECCCCCccccCCHHH--hCCCCCCEEECCCCcccCcCChH-HhC-------------------------------
Confidence 37788999999988888876 88899999999999998888765 333
Q ss_pred EEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCccEEECccCccccCCCCCCC--CCCCCCCcc
Q 017800 192 TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTVLNLSYNQFEGPIPRGSQ--FNTFPNDSY 269 (365)
Q Consensus 192 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~~L~ls~N~l~g~~p~~~~--~~~~~~~~~ 269 (365)
+++|+.|||++|+++|.+|+.++.+++|+.| ++++|+++|.+|.... ........+
T Consensus 465 ------------l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L----------~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 465 ------------ITSLEVLDLSYNSFNGSIPESLGQLTSLRIL----------NLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred ------------CCCCCEEECCCCCCCCCCchHHhcCCCCCEE----------ECcCCcccccCChHHhhccccCceEEe
Confidence 4567889999999999999999988887754 5556667788886432 122345668
Q ss_pred CCCCCCCCcCCCCCCC
Q 017800 270 VGNSGLCGFPLLESCN 285 (365)
Q Consensus 270 ~~n~~lc~~~~~~~c~ 285 (365)
.+|+.+|+.|....|.
T Consensus 523 ~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 523 TDNAGLCGIPGLRACG 538 (623)
T ss_pred cCCccccCCCCCCCCc
Confidence 8999999987656674
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.36 E-value=1.1e-12 Score=130.46 Aligned_cols=107 Identities=29% Similarity=0.416 Sum_probs=78.3
Q ss_pred CCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeec
Q 017800 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (365)
Q Consensus 41 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 120 (365)
++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|+|++|++++.+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 46677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cccccccCCCCCccC-CCCccEEEcCCCcc
Q 017800 121 NRFWGPIGENTTIVP-FPSLRIIDLSHNEF 149 (365)
Q Consensus 121 N~l~~~~~~~~~~~~-l~~L~~L~ls~N~l 149 (365)
|+++|.+|..+ .. ..++..+++++|..
T Consensus 500 N~l~g~iP~~l--~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAAL--GGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHH--hhccccCceEEecCCcc
Confidence 77777777655 32 24555667776654
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.32 E-value=5.8e-14 Score=130.81 Aligned_cols=170 Identities=26% Similarity=0.379 Sum_probs=139.9
Q ss_pred CEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeecc
Q 017800 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (365)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 121 (365)
...||+.|.+. ++|..++.+..|+.+.|..|.+. .+|..++++..|++|||+.|+++- +|..++.++ |+.|.+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecC
Confidence 67899999998 89999999999999999999999 789999999999999999999986 888888887 899999999
Q ss_pred ccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchh
Q 017800 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (365)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (365)
+++ .+|+.+ +....|..||.+.|.+... |.. ++.+.+|..+++... .+..++ .+..
T Consensus 154 kl~-~lp~~i--g~~~tl~~ld~s~nei~sl-psq-l~~l~slr~l~vrRn---~l~~lp----------------~El~ 209 (722)
T KOG0532|consen 154 KLT-SLPEEI--GLLPTLAHLDVSKNEIQSL-PSQ-LGYLTSLRDLNVRRN---HLEDLP----------------EELC 209 (722)
T ss_pred ccc-cCCccc--ccchhHHHhhhhhhhhhhc-hHH-hhhHHHHHHHHHhhh---hhhhCC----------------HHHh
Confidence 994 677777 7889999999999999855 434 778888877655221 111111 0100
Q ss_pred hhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 202 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
.-.|..||+|+|+++ .+|-.|..|+.|++|-|.+|.|+
T Consensus 210 --~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 210 --SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred --CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 124788999999999 99999999999999999999988
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=6.3e-12 Score=119.18 Aligned_cols=172 Identities=29% Similarity=0.399 Sum_probs=118.2
Q ss_pred CCCCEEEccCCcCcccCCcCccCCC-CcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEE
Q 017800 39 LTHKVLDMRMNNFNGKIPRKFVKSC-NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 117 (365)
+.++.|++.+|.++ .+|.....+. +|+.|++++|++. .+|..+..+++|+.|++++|+++. +|...+..++|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhhee
Confidence 45788899999998 7777777774 8999999999998 676778889999999999999987 666565788999999
Q ss_pred eeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccc
Q 017800 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID 197 (365)
Q Consensus 118 L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (365)
+++|++. .+|... .....|+++.+++|.+...+. . +.++..+..+.... +.+.
T Consensus 193 ls~N~i~-~l~~~~--~~~~~L~~l~~~~N~~~~~~~-~-~~~~~~l~~l~l~~----------------------n~~~ 245 (394)
T COG4886 193 LSGNKIS-DLPPEI--ELLSALEELDLSNNSIIELLS-S-LSNLKNLSGLELSN----------------------NKLE 245 (394)
T ss_pred ccCCccc-cCchhh--hhhhhhhhhhhcCCcceecch-h-hhhcccccccccCC----------------------ceee
Confidence 9999985 445432 345668999999995332211 1 44444433322100 0000
Q ss_pred --cchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 198 --IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 198 --~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
......++.++.|++++|+++ .++. ++.+.+++.|++++|.+.
T Consensus 246 ~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 246 DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred eccchhccccccceecccccccc-cccc-ccccCccCEEeccCcccc
Confidence 122233566888888888888 4444 777777777776666654
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.23 E-value=1.4e-12 Score=115.13 Aligned_cols=148 Identities=22% Similarity=0.233 Sum_probs=105.0
Q ss_pred cCCcccEEEccCCCCCCcCC-------CCCCCCcEEECCCC-----------------------CCCCEEEccCCcCccc
Q 017800 5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN-----------------------LTHKVLDMRMNNFNGK 54 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~-------~~~~~L~~L~ls~N-----------------------~~L~~L~Ls~N~l~~~ 54 (365)
.+.+++.++||+|.|..... ...++|+..++++- ++|++||||.|-|.-.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 56789999999999875433 45568888888876 5899999999988755
Q ss_pred CCcCc----cCCCCcCEEEccCCcCccCC-------------CccCcCCCCCCEEEccCCcCCCCCC----hhhcCCCCC
Q 017800 55 IPRKF----VKSCNLTSLNLNGNRLEGPL-------------PPSLVNCHHLEVLNVGNNQINDNFP----NWLEILPEL 113 (365)
Q Consensus 55 ~p~~~----~~l~~L~~L~L~~N~l~~~~-------------p~~l~~l~~L~~L~L~~N~l~~~~p----~~l~~l~~L 113 (365)
-+..| ..+..|++|+|.+|.+.-.- ..-...-+.|+++...+|++..-.. ..|...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 44443 45788999999998876221 1123345788999999998875322 345667889
Q ss_pred cEEEeeccccccccC--CCCCccCCCCccEEEcCCCcccCc
Q 017800 114 QVLILRSNRFWGPIG--ENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 114 ~~L~L~~N~l~~~~~--~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
+.+.+..|.|...-. ....+..+++|++|||.+|-++..
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH
Confidence 999999888742111 011346789999999999988754
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=9e-13 Score=122.98 Aligned_cols=147 Identities=23% Similarity=0.322 Sum_probs=96.3
Q ss_pred CCcccEEEccCCCCCCcCC--CCCCCCcEEECCCC------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEcc
Q 017800 6 IATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~--~~~~~L~~L~ls~N------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 71 (365)
+.--...|++.|++..++. +.|..|+.+.|.+| ..|++|||+.|+++ .+|..++.++ |+.|.++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 4444567788888776544 45556666666665 55677777777777 6666666665 7777777
Q ss_pred CCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccC
Q 017800 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (365)
Q Consensus 72 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~ 151 (365)
+|+++ .+|..++.+..|..||.+.|.+.. +|..++.+.+|+.|.++.|++. .+|+.+ . .-.|..||+|+|+++
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~-~lp~El--~-~LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE-DLPEEL--C-SLPLIRLDFSCNKIS- 224 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-hCCHHH--h-CCceeeeecccCcee-
Confidence 77777 567777777777777777777765 6667777777777777777764 344444 3 334667777777776
Q ss_pred ccchhhhhhhh
Q 017800 152 VLLTGYLDNFK 162 (365)
Q Consensus 152 ~~~~~~~~~l~ 162 (365)
.+|.. +.+++
T Consensus 225 ~iPv~-fr~m~ 234 (722)
T KOG0532|consen 225 YLPVD-FRKMR 234 (722)
T ss_pred ecchh-hhhhh
Confidence 34543 44433
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=2.1e-11 Score=115.56 Aligned_cols=187 Identities=26% Similarity=0.378 Sum_probs=136.5
Q ss_pred EEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCC-CCCEEEccCCcCCCCCChhhcCCCCCcEEEeecc
Q 017800 43 VLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH-HLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (365)
Q Consensus 43 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 121 (365)
.++++.|.+...+ ..+..++.++.|++.+|.++ .+|......+ +|+.|++++|++.. +|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence 5888888875333 34556688999999999999 6777777775 99999999999987 6678899999999999999
Q ss_pred ccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchh
Q 017800 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (365)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (365)
++... |... ...+.|+.|++++|.++...+. ......|..+...... ........
T Consensus 174 ~l~~l-~~~~--~~~~~L~~L~ls~N~i~~l~~~--~~~~~~L~~l~~~~N~--------------------~~~~~~~~ 228 (394)
T COG4886 174 DLSDL-PKLL--SNLSNLNNLDLSGNKISDLPPE--IELLSALEELDLSNNS--------------------IIELLSSL 228 (394)
T ss_pred hhhhh-hhhh--hhhhhhhheeccCCccccCchh--hhhhhhhhhhhhcCCc--------------------ceecchhh
Confidence 99644 3322 3789999999999999865442 1222223332220100 00011122
Q ss_pred hhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc------------EEECccCccccCCCCC
Q 017800 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT------------VLNLSYNQFEGPIPRG 258 (365)
Q Consensus 202 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~------------~L~ls~N~l~g~~p~~ 258 (365)
..+..+..+.+++|++. .++..++.++.++.|++++|+++ .+++++|.++...|..
T Consensus 229 ~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 229 SNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hhcccccccccCCceee-eccchhccccccceeccccccccccccccccCccCEEeccCccccccchhh
Confidence 33667778889999988 55788899999999999999877 7888888888766653
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=5.1e-11 Score=98.43 Aligned_cols=107 Identities=27% Similarity=0.398 Sum_probs=41.8
Q ss_pred CCCEEEccCCcCcccCCcCcc-CCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhh-cCCCCCcEEE
Q 017800 40 THKVLDMRMNNFNGKIPRKFV-KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWL-EILPELQVLI 117 (365)
Q Consensus 40 ~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~ 117 (365)
+++.|+|.+|.|+ .+. .++ .+.+|+.|+|++|.|+. ++ .+..++.|++|++++|+|+. ++..+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence 3478888899887 343 355 57889999999999984 43 57888999999999999987 44444 4689999999
Q ss_pred eeccccccccCCCCCccCCCCccEEEcCCCcccCc
Q 017800 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 118 L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
+++|++... .+...+..+++|+.|++.+|+++..
T Consensus 95 L~~N~I~~l-~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 95 LSNNKISDL-NELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -TTS---SC-CCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CcCCcCCCh-HHhHHHHcCCCcceeeccCCcccch
Confidence 999998542 2222346789999999999998743
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.1e-11 Score=112.33 Aligned_cols=199 Identities=21% Similarity=0.216 Sum_probs=103.7
Q ss_pred cCCcccEEEccCCCCCCcCC----CCCCCCcEEECCCC---------------CCCCEEEccCCcCcccCCcC-ccCCCC
Q 017800 5 GIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSN---------------LTHKVLDMRMNNFNGKIPRK-FVKSCN 64 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~----~~~~~L~~L~ls~N---------------~~L~~L~Ls~N~l~~~~p~~-~~~l~~ 64 (365)
++++|+...|.+........ ..+++++.|||+.| ++|+.|+|+.|.+.-..... -..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45677777777776654432 45667777766666 56666666666654221111 123455
Q ss_pred cCEEEccCCcCccC-CCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEE
Q 017800 65 LTSLNLNGNRLEGP-LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143 (365)
Q Consensus 65 L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 143 (365)
|+.|.|+.|.++.. +-..+..+++|+.|+|..|.....-......+..|+.|+|++|++-. .+.....+.++.|+.|.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhh
Confidence 66666666666511 12223345666666666664222222233344556666666665532 11111124555666666
Q ss_pred cCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccC-CC
Q 017800 144 LSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG-IP 222 (365)
Q Consensus 144 ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p 222 (365)
++.+.+...-..+ ...+... ..+++|+.|+++.|+|... .-
T Consensus 278 ls~tgi~si~~~d----~~s~~kt----------------------------------~~f~kL~~L~i~~N~I~~w~sl 319 (505)
T KOG3207|consen 278 LSSTGIASIAEPD----VESLDKT----------------------------------HTFPKLEYLNISENNIRDWRSL 319 (505)
T ss_pred ccccCcchhcCCC----ccchhhh----------------------------------cccccceeeecccCcccccccc
Confidence 6555554331111 1111111 1267889999999988621 12
Q ss_pred hhhhcccccccccCcCCCcc
Q 017800 223 EVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 223 ~~l~~l~~L~~L~Ls~N~L~ 242 (365)
..+..+++|+.|....|.|+
T Consensus 320 ~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 320 NHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred chhhccchhhhhhccccccc
Confidence 24455667777776666665
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=9.7e-12 Score=107.84 Aligned_cols=83 Identities=25% Similarity=0.325 Sum_probs=59.1
Q ss_pred CCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccE
Q 017800 62 SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRI 141 (365)
Q Consensus 62 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 141 (365)
...|+++||++|.|+ .+.++..-.+.++.|++++|.+... ..++.+++|+.|||++|.++... .+- ..+.++++
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~-Gwh--~KLGNIKt 356 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECV-GWH--LKLGNIKT 356 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhh-hhH--hhhcCEee
Confidence 456778888888887 6666777777888888888888753 33777888888888888775322 222 45677778
Q ss_pred EEcCCCccc
Q 017800 142 IDLSHNEFT 150 (365)
Q Consensus 142 L~ls~N~l~ 150 (365)
|.|+.|.+.
T Consensus 357 L~La~N~iE 365 (490)
T KOG1259|consen 357 LKLAQNKIE 365 (490)
T ss_pred eehhhhhHh
Confidence 888887765
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=7.8e-11 Score=97.32 Aligned_cols=126 Identities=29% Similarity=0.358 Sum_probs=50.0
Q ss_pred cCCcccEEEccCCCCCCcCCCCCC-CCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccC
Q 017800 5 GIATLYYLDLSNNFLTNIEYFPPT-NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~~~~~-~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 83 (365)
+..+++.|+|.+|.|+.+.. +. .| .+|+.|||++|.|+. ++ .+..+++|++|++++|+|+. +++.+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~--L~~~l--------~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN--LGATL--------DKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGL 83 (175)
T ss_dssp -------------------S----TT---------TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHH
T ss_pred cccccccccccccccccccc--hhhhh--------cCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccch
Confidence 34467888888888876533 11 12 234788999999984 43 47789999999999999994 55445
Q ss_pred -cCCCCCCEEEccCCcCCCCCC-hhhcCCCCCcEEEeeccccccccCC--CCCccCCCCccEEEc
Q 017800 84 -VNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGE--NTTIVPFPSLRIIDL 144 (365)
Q Consensus 84 -~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~--~~~~~~l~~L~~L~l 144 (365)
..+++|++|++++|+|...-. ..+..+++|+.|++.+|.++.. +. .+.+..+|+|+.||-
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 368999999999999976322 4567899999999999998643 21 112367899999875
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=3.6e-11 Score=104.35 Aligned_cols=66 Identities=29% Similarity=0.437 Sum_probs=54.0
Q ss_pred cCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCc
Q 017800 82 SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 82 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
.+.-...|+++||++|.|+. +..+..-.|.++.|++++|.+... ..+ ..+++|+.||||+|.++..
T Consensus 279 ~~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nL--a~L~~L~~LDLS~N~Ls~~ 344 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNL--AELPQLQLLDLSGNLLAEC 344 (490)
T ss_pred ecchHhhhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhh--hhcccceEeecccchhHhh
Confidence 33445679999999999987 677788889999999999998532 224 7899999999999998754
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.5e-11 Score=111.55 Aligned_cols=146 Identities=23% Similarity=0.225 Sum_probs=115.4
Q ss_pred cCCcccEEEccCCCCCCcCC-----CCCCCCcEEECCCC--------------CCCCEEEccCCcCcc-cCCcCccCCCC
Q 017800 5 GIATLYYLDLSNNFLTNIEY-----FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNG-KIPRKFVKSCN 64 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~-----~~~~~L~~L~ls~N--------------~~L~~L~Ls~N~l~~-~~p~~~~~l~~ 64 (365)
.+++++.||||+|-|+...+ ..+++|+.|+++.| +.|+.|.|+.|.++. .+-.....+++
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 57899999999999987665 78999999999999 789999999999983 23334567899
Q ss_pred cCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCC--hhhcCCCCCcEEEeeccccccc-cCCCC---CccCCCC
Q 017800 65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP--NWLEILPELQVLILRSNRFWGP-IGENT---TIVPFPS 138 (365)
Q Consensus 65 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~-~~~~~---~~~~l~~ 138 (365)
|+.|+|..|...+.-.....-+..|++|||++|++-. .+ ...+.++.|..|+++.+.+... .|+.- ....+++
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 9999999996433434445567889999999999976 44 4667899999999999988643 23320 1146799
Q ss_pred ccEEEcCCCcccC
Q 017800 139 LRIIDLSHNEFTG 151 (365)
Q Consensus 139 L~~L~ls~N~l~~ 151 (365)
|+.|+++.|++..
T Consensus 303 L~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 303 LEYLNISENNIRD 315 (505)
T ss_pred ceeeecccCcccc
Confidence 9999999999863
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=1.5e-11 Score=108.70 Aligned_cols=194 Identities=23% Similarity=0.269 Sum_probs=126.6
Q ss_pred cCCcccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccC-------------CcCccCCCCcCEEEcc
Q 017800 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKI-------------PRKFVKSCNLTSLNLN 71 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~-------------p~~~~~l~~L~~L~L~ 71 (365)
+.+.|++||||.|.|....+ +.|..| ++++..|+.|.|.+|.+...- ....+.-++|+++..+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~---~~l~~l-l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGI---RGLEEL-LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred cCCceeEeeccccccCccch---HHHHHH-HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 34566666666666653332 011111 111255677777777765211 1123345789999999
Q ss_pred CCcCccC----CCccCcCCCCCCEEEccCCcCCCCC----ChhhcCCCCCcEEEeecccccccc--CCCCCccCCCCccE
Q 017800 72 GNRLEGP----LPPSLVNCHHLEVLNVGNNQINDNF----PNWLEILPELQVLILRSNRFWGPI--GENTTIVPFPSLRI 141 (365)
Q Consensus 72 ~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~ 141 (365)
+|++... +...|...+.|+.+.++.|.|...- ...+..+++|+.|||++|.|+... .-.-.+..+++|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 9998743 2345667789999999999986422 245778999999999999986321 11112367789999
Q ss_pred EEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccC-
Q 017800 142 IDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG- 220 (365)
Q Consensus 142 L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~- 220 (365)
|.++++.+...-...+...+... .+.|++|+|.+|.|+..
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~---------------------------------------~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKES---------------------------------------APSLEVLELAGNEITRDA 286 (382)
T ss_pred ecccccccccccHHHHHHHHhcc---------------------------------------CCCCceeccCcchhHHHH
Confidence 99999998765433333322211 46789999999999843
Q ss_pred ---CChhhhcccccccccCcCCCc
Q 017800 221 ---IPEVVGKLNLLKGLNISHNNL 241 (365)
Q Consensus 221 ---~p~~l~~l~~L~~L~Ls~N~L 241 (365)
+...+...+.|..|+|++|.+
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCcccc
Confidence 334455678899999888888
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.02 E-value=2e-10 Score=78.22 Aligned_cols=60 Identities=28% Similarity=0.428 Sum_probs=34.3
Q ss_pred CCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcC
Q 017800 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI 99 (365)
Q Consensus 40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 99 (365)
+|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 445556666665544445555566666666666666555555555566666666655543
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.00 E-value=2.3e-10 Score=77.89 Aligned_cols=61 Identities=36% Similarity=0.495 Sum_probs=39.9
Q ss_pred CCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeecccc
Q 017800 63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123 (365)
Q Consensus 63 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 123 (365)
++|++|++++|+++...+..|.++++|++|++++|.++...|.+|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566677777777655555666677777777777777665556666666666666666653
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.90 E-value=3.5e-10 Score=107.82 Aligned_cols=172 Identities=26% Similarity=0.273 Sum_probs=97.8
Q ss_pred CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEe
Q 017800 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 118 (365)
++|+.|++.+|.|. .+...+..+.+|++|++++|+|+.. ..+..++.|+.|++++|.++.. ..+..++.|+.+++
T Consensus 95 ~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccC
Confidence 34466677777776 3333356677777777777777743 2355666677777777777652 34555677777777
Q ss_pred eccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEecccc
Q 017800 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (365)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (365)
++|.+...-+... ..+.+++.+++..|.+....... .+..+..+...+.....+.+..
T Consensus 170 ~~n~i~~ie~~~~--~~~~~l~~l~l~~n~i~~i~~~~---~~~~l~~~~l~~n~i~~~~~l~----------------- 227 (414)
T KOG0531|consen 170 SYNRIVDIENDEL--SELISLEELDLGGNSIREIEGLD---LLKKLVLLSLLDNKISKLEGLN----------------- 227 (414)
T ss_pred Ccchhhhhhhhhh--hhccchHHHhccCCchhcccchH---HHHHHHHhhcccccceeccCcc-----------------
Confidence 7777654333101 45667777777777765442222 2222211111010000000000
Q ss_pred chhhhhh--heeeEEcCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 199 KMERILT--IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 199 ~~~~~l~--~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
.+. .|+.+++++|.+. .+++.+..+..+..|+++.|++.
T Consensus 228 ----~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 228 ----ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ----cchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 011 3778888888887 44466677788888888888776
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.71 E-value=5.9e-10 Score=107.19 Aligned_cols=105 Identities=24% Similarity=0.216 Sum_probs=79.9
Q ss_pred CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChh-hcCCCCCcEEE
Q 017800 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNW-LEILPELQVLI 117 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~ 117 (365)
..|...+.++|.+. .+..++.-++.|+.|+|++|+++.. ..+..|+.|++|||++|.++. +|.. ...+ +|+.|.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhh-hheeee
Confidence 46777888888887 6667777788899999999998843 378888999999999999876 5532 2233 488999
Q ss_pred eeccccccccCCCCCccCCCCccEEEcCCCcccCc
Q 017800 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 118 L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
+++|.++.... + .++.+|+.||+++|-+.+.
T Consensus 239 lrnN~l~tL~g--i--e~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 239 LRNNALTTLRG--I--ENLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred ecccHHHhhhh--H--HhhhhhhccchhHhhhhcc
Confidence 99998764332 2 6788899999999888764
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.60 E-value=1.3e-08 Score=97.09 Aligned_cols=171 Identities=25% Similarity=0.256 Sum_probs=111.9
Q ss_pred CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEe
Q 017800 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 118 (365)
..++.+++..|.+. .+-..+..+.+|+.|++.+|+|.. +...+..+++|++|++++|.|+..- .+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence 34566778888887 344457888999999999999984 4444788999999999999998753 4667788999999
Q ss_pred eccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccc-
Q 017800 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID- 197 (365)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 197 (365)
.+|.+... ..+ ..+..|+.+++++|.+....+.. ...+..+..+.. ..+.+.
T Consensus 148 ~~N~i~~~--~~~--~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l----------------------~~n~i~~ 200 (414)
T KOG0531|consen 148 SGNLISDI--SGL--ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDL----------------------GGNSIRE 200 (414)
T ss_pred ccCcchhc--cCC--ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhc----------------------cCCchhc
Confidence 99998533 222 55899999999999988664410 122222222111 000000
Q ss_pred cchhhhhhheeeEEcCCCccccCCChhhhccc--ccccccCcCCCcc
Q 017800 198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLN--LLKGLNISHNNLT 242 (365)
Q Consensus 198 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~L~ 242 (365)
......+..+..+++..|.++..-+ +..++ .|+.+++++|.+.
T Consensus 201 i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 201 IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc
Confidence 1111124445556888888873322 12223 3888888888776
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.44 E-value=1.5e-07 Score=96.60 Aligned_cols=107 Identities=24% Similarity=0.259 Sum_probs=75.5
Q ss_pred CCCCEEEccCCc--CcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEE
Q 017800 39 LTHKVLDMRMNN--FNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVL 116 (365)
Q Consensus 39 ~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 116 (365)
+.|+.|-+..|. +....++.|..++.|+.|||++|.=-+.+|..++.+-+|++|++++..+.. +|..++.+..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhhee
Confidence 345666666664 332223346678888888888877666788888888888888888888875 78888888888888
Q ss_pred EeeccccccccCCCCCccCCCCccEEEcCCCc
Q 017800 117 ILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (365)
Q Consensus 117 ~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~ 148 (365)
++..+.....+|... ..+++|++|.+..-.
T Consensus 624 nl~~~~~l~~~~~i~--~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGIL--LELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchh--hhcccccEEEeeccc
Confidence 888776554554444 567888888775543
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.41 E-value=9.2e-08 Score=82.35 Aligned_cols=143 Identities=25% Similarity=0.303 Sum_probs=102.3
Q ss_pred CCcccEEEccCCCCCCcCC-------CCCCCCcEEECCCC-----------------------CCCCEEEccCCcCcccC
Q 017800 6 IATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN-----------------------LTHKVLDMRMNNFNGKI 55 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~-------~~~~~L~~L~ls~N-----------------------~~L~~L~Ls~N~l~~~~ 55 (365)
+..++.+|||+|.|..... ..-.+|+..+++.- ++|+..+||.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 6788999999999976543 34567777777765 88999999999998776
Q ss_pred CcC----ccCCCCcCEEEccCCcCccCCCcc-------------CcCCCCCCEEEccCCcCCCCCChh-----hcCCCCC
Q 017800 56 PRK----FVKSCNLTSLNLNGNRLEGPLPPS-------------LVNCHHLEVLNVGNNQINDNFPNW-----LEILPEL 113 (365)
Q Consensus 56 p~~----~~~l~~L~~L~L~~N~l~~~~p~~-------------l~~l~~L~~L~L~~N~l~~~~p~~-----l~~l~~L 113 (365)
|+. ++..+.|.+|.+++|.+.-.--.- ..+-+.|+......|++.. .|.. +..-.+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCc
Confidence 654 456688999999999876221111 2345789999999999865 4432 2223578
Q ss_pred cEEEeeccccccccCCCC------CccCCCCccEEEcCCCcccCc
Q 017800 114 QVLILRSNRFWGPIGENT------TIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 114 ~~L~L~~N~l~~~~~~~~------~~~~l~~L~~L~ls~N~l~~~ 152 (365)
+.+-+..|.|. |+.. ....+.+|++||+..|-++-.
T Consensus 188 k~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~ 229 (388)
T COG5238 188 KEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE 229 (388)
T ss_pred eeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence 88999888763 3321 124578999999999988743
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.28 E-value=1.1e-08 Score=98.68 Aligned_cols=113 Identities=27% Similarity=0.288 Sum_probs=48.2
Q ss_pred cccEEEccCCCCCCcCC--CCCCCCcEEECCCC-----------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCc
Q 017800 8 TLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (365)
Q Consensus 8 ~L~~L~Ls~N~l~~~~~--~~~~~L~~L~ls~N-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 74 (365)
.|...++++|.+..... .-++.|+.|||++| +.|++|||++|.+. .+|.-=..-++|+.|.+++|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNA 243 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhc-cccccchhhhhheeeeecccH
Confidence 44555566665543322 22334444444444 44445555555544 333211111234555555554
Q ss_pred CccCCCccCcCCCCCCEEEccCCcCCCCCC-hhhcCCCCCcEEEeecccc
Q 017800 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRF 123 (365)
Q Consensus 75 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l 123 (365)
++.. ..+.++.+|+.||+++|-|.+.-. ..++.+..|+.|+|.+|.+
T Consensus 244 l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 244 LTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 4421 234444555555555554443111 1123334444444444443
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.26 E-value=3e-08 Score=76.74 Aligned_cols=103 Identities=26% Similarity=0.387 Sum_probs=55.9
Q ss_pred CEEEccCCcCcccCCcC---ccCCCCcCEEEccCCcCccCCCccCc-CCCCCCEEEccCCcCCCCCChhhcCCCCCcEEE
Q 017800 42 KVLDMRMNNFNGKIPRK---FVKSCNLTSLNLNGNRLEGPLPPSLV-NCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117 (365)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 117 (365)
..+||+.+++- .+++. +.....|+..+|++|.+. ..|+.|. ..+.++.|++++|++++ +|..++.++.|+.|+
T Consensus 30 h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 30 HFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLN 106 (177)
T ss_pred hhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcc
Confidence 34555555553 33333 233445555566666666 3343333 33456666666666665 566666666666666
Q ss_pred eeccccccccCCCCCccCCCCccEEEcCCCccc
Q 017800 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (365)
Q Consensus 118 L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~ 150 (365)
++.|.+. ..|..+ ..+.++-.||..+|.+.
T Consensus 107 l~~N~l~-~~p~vi--~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVI--APLIKLDMLDSPENARA 136 (177)
T ss_pred cccCccc-cchHHH--HHHHhHHHhcCCCCccc
Confidence 6666663 233333 44555666666555554
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.23 E-value=1.7e-08 Score=78.13 Aligned_cols=133 Identities=26% Similarity=0.322 Sum_probs=91.2
Q ss_pred cccEEEccCCCCCCcCC--CCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCcc-CCCCcCEEEccCCcCccCCCccCc
Q 017800 8 TLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV-KSCNLTSLNLNGNRLEGPLPPSLV 84 (365)
Q Consensus 8 ~L~~L~Ls~N~l~~~~~--~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~ 84 (365)
.+..+||+.+++..+.. ..+... ..|+..+|++|.+. ..|+.|. ..+.++.|+|++|.|+ .+|..+.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~--------~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~A 97 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKG--------YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELA 97 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCC--------ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHh
Confidence 34556777776653322 222223 34488899999998 4555554 4568999999999999 7888899
Q ss_pred CCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccc
Q 017800 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (365)
Q Consensus 85 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~ 154 (365)
.++.|+.|+++.|.+.. .|..+..+.++..|+..+|.+. .+|-.......+. ..++.++.+.+.-+
T Consensus 98 am~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~a--l~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 98 AMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPA--LIKLGNEPLGDETK 163 (177)
T ss_pred hhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHH--HHHhcCCcccccCc
Confidence 99999999999999986 7888888999999999988873 3333221122222 23445666665443
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.13 E-value=1.3e-06 Score=54.61 Aligned_cols=37 Identities=30% Similarity=0.493 Sum_probs=31.2
Q ss_pred hheeeEEcCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 205 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
++|++|++++|+|+ .+|..++++++|+.|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 36899999999999 67878999999999999888887
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=2.4e-06 Score=53.49 Aligned_cols=35 Identities=46% Similarity=0.739 Sum_probs=13.8
Q ss_pred cCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCC
Q 017800 65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN 100 (365)
Q Consensus 65 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 100 (365)
|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 23333444444444444444443
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=3.2e-08 Score=86.19 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=25.8
Q ss_pred hhheeeEEcCCC-ccccCCChhhhcccccccccCcCCC
Q 017800 204 LTIFMTIDLSSN-KFQGGIPEVVGKLNLLKGLNISHNN 240 (365)
Q Consensus 204 l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~ 240 (365)
+++|.+||||+| .++.....+|..++.|++|.|+.+.
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 677888888876 4565555666777777777776654
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.00 E-value=7.4e-06 Score=70.86 Aligned_cols=182 Identities=18% Similarity=0.237 Sum_probs=94.6
Q ss_pred CCEEEccCCcCcccCCc----CccCCCCcCEEEccCCcCc---cCCC-------ccCcCCCCCCEEEccCCcCCCCCChh
Q 017800 41 HKVLDMRMNNFNGKIPR----KFVKSCNLTSLNLNGNRLE---GPLP-------PSLVNCHHLEVLNVGNNQINDNFPNW 106 (365)
Q Consensus 41 L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~---~~~p-------~~l~~l~~L~~L~L~~N~l~~~~p~~ 106 (365)
++.+|||+|-|...... .+.+-.+|+..++++--.. ..++ ..+.+|+.|+..+||+|.+....|..
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~ 111 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE 111 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence 35566666666533222 2333445555555542211 1112 23445666666666666666555543
Q ss_pred h----cCCCCCcEEEeeccccccccCCC-C-----------CccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCC
Q 017800 107 L----EILPELQVLILRSNRFWGPIGEN-T-----------TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNI 170 (365)
Q Consensus 107 l----~~l~~L~~L~L~~N~l~~~~~~~-~-----------~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~ 170 (365)
+ ..-+.|..|.+++|.+. .+... + ....-|.|+..+...|++.......+...+++
T Consensus 112 L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s------- 183 (388)
T COG5238 112 LGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES------- 183 (388)
T ss_pred HHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh-------
Confidence 3 34456666666666542 11110 0 01334667777777777653211111111110
Q ss_pred cccccccCCCCCCCccceEEEEEeccccchh--------hhhhheeeEEcCCCccccC----CChhhhcccccccccCcC
Q 017800 171 SVEVDYMTPLNSSNYYESIILTIKGIDIKME--------RILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNISH 238 (365)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~ 238 (365)
...+..+.+..+++.+.-. ..+.+|+.|||..|-++-. ...++...+.|+.|.+.+
T Consensus 184 ------------h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 184 ------------HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred ------------hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence 0112334444555554311 1267899999999998843 344556778889999998
Q ss_pred CCcc
Q 017800 239 NNLT 242 (365)
Q Consensus 239 N~L~ 242 (365)
|-++
T Consensus 252 Clls 255 (388)
T COG5238 252 CLLS 255 (388)
T ss_pred hhhc
Confidence 8776
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.93 E-value=5e-06 Score=85.55 Aligned_cols=136 Identities=22% Similarity=0.248 Sum_probs=100.1
Q ss_pred CcccEEEccCCCCCCcCC-CCCCCCcEEECCCC---------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEc
Q 017800 7 ATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN---------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~ls~N---------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (365)
...+.+.+-+|.+..+.- ..++.|+.|-+..| +.|.+|||++|.=-+.+|..++.+-+|++|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 355666666666654433 33445655555443 67799999998777799999999999999999
Q ss_pred cCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccc--cccCCCCCccCCCCccEEEcC
Q 017800 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW--GPIGENTTIVPFPSLRIIDLS 145 (365)
Q Consensus 71 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~~~~~~~~~~l~~L~~L~ls 145 (365)
++..++ .+|..+.++..|.+|++..+.-...+|.....+++|++|.+..-... ...-..+ ..+.+|+.+...
T Consensus 603 ~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el--~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 603 SDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL--ENLEHLENLSIT 676 (889)
T ss_pred cCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhh--hcccchhhheee
Confidence 999999 89999999999999999998876667777788999999999765421 1111222 455556555553
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.83 E-value=3.2e-05 Score=64.11 Aligned_cols=107 Identities=23% Similarity=0.245 Sum_probs=79.7
Q ss_pred CCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCC-hhhcCCCCCcEEEe
Q 017800 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLIL 118 (365)
Q Consensus 40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L 118 (365)
+...+||++|.+.. + ..|..++.|.+|.|++|+|+..-|.--.-+++|..|.|.+|.|..... .-+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 45778999999863 2 347788999999999999996655544557789999999999875211 24678899999999
Q ss_pred eccccccccC-CCCCccCCCCccEEEcCCCc
Q 017800 119 RSNRFWGPIG-ENTTIVPFPSLRIIDLSHNE 148 (365)
Q Consensus 119 ~~N~l~~~~~-~~~~~~~l~~L~~L~ls~N~ 148 (365)
-+|..+..-- ....+..+++|++||++.=.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9998753221 12234778999999987643
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=5.9e-05 Score=70.29 Aligned_cols=45 Identities=16% Similarity=0.311 Sum_probs=23.2
Q ss_pred heeeEEcCCCc-----c-ccCCChhhhcccccccccCcCCCccEEECccCcc
Q 017800 206 IFMTIDLSSNK-----F-QGGIPEVVGKLNLLKGLNISHNNLTVLNLSYNQF 251 (365)
Q Consensus 206 ~L~~L~Ls~N~-----l-~~~~p~~l~~l~~L~~L~Ls~N~L~~L~ls~N~l 251 (365)
+|+.|+++.|. + .+.+|+.+ .+.-...+.++.+.++..++.+|.+
T Consensus 178 SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f~d~~i~~~~~ 228 (426)
T PRK15386 178 SLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVFKDKNITFQGN 228 (426)
T ss_pred cCcEEEecccccccccCccccccccc-EechhhhcccCHHHhhcccccccCc
Confidence 45566665542 1 12455555 4444445556666666555555443
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=1.2e-05 Score=70.44 Aligned_cols=86 Identities=20% Similarity=0.309 Sum_probs=45.0
Q ss_pred CCCcCEEEccCCcCcc--CCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCc
Q 017800 62 SCNLTSLNLNGNRLEG--PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL 139 (365)
Q Consensus 62 l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L 139 (365)
.+.++.+||.+|+|+. ++...+.+++.|++|+++.|++...+-..-....+|+.|-|.+..+.=..... .+..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s-~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTS-SLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhh-hhhcchhh
Confidence 4566667777776662 23333456666777777777665432211123456666666665542111111 12455666
Q ss_pred cEEEcCCCc
Q 017800 140 RIIDLSHNE 148 (365)
Q Consensus 140 ~~L~ls~N~ 148 (365)
+.|++|.|.
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 666666664
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=0.00012 Score=68.24 Aligned_cols=122 Identities=19% Similarity=0.257 Sum_probs=74.3
Q ss_pred CCcccEEEccCCCCCCcCCCCCCCCcEEECCCC-----------CCCCEEEccCC-cCcccCCcCccCCCCcCEEEccCC
Q 017800 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-----------LTHKVLDMRMN-NFNGKIPRKFVKSCNLTSLNLNGN 73 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N-----------~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N 73 (365)
+.+++.|++++|.++..+ .-..+|+.|.++++ ++|++|++++| .+. .+|. +|+.|+++.+
T Consensus 51 ~~~l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n 122 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGS 122 (426)
T ss_pred hcCCCEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc-cccc------ccceEEeCCC
Confidence 578999999999888764 34457888888875 46777788777 444 4553 3666666665
Q ss_pred cCc--cCCCccCcCCCCCCEEEccCCc-CCC-CCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCc
Q 017800 74 RLE--GPLPPSLVNCHHLEVLNVGNNQ-IND-NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (365)
Q Consensus 74 ~l~--~~~p~~l~~l~~L~~L~L~~N~-l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~ 148 (365)
... +.+|. +|+.|.+.+++ ... .+|.. -.++|++|++++|... ..|..+ ..+|+.|+++.+.
T Consensus 123 ~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~L----P~SLk~L~ls~n~ 188 (426)
T PRK15386 123 ATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKL----PESLQSITLHIEQ 188 (426)
T ss_pred CCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcccc----cccCcEEEecccc
Confidence 543 13333 35566654322 110 01110 1157889999887753 234333 2678888887763
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=1.1e-05 Score=70.74 Aligned_cols=85 Identities=24% Similarity=0.249 Sum_probs=63.5
Q ss_pred CCCCEEEccCCcCcc--cCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCC-ChhhcCCCCCcE
Q 017800 39 LTHKVLDMRMNNFNG--KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF-PNWLEILPELQV 115 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~ 115 (365)
+.++.+||.+|.|+. ++-.-+.++++|++|+|+.|++...+-.--....+|+.|-|.+..+.-.- -..+..+|.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 678899999999984 34444668999999999999998554322146778999999887775322 234567888899
Q ss_pred EEeecccc
Q 017800 116 LILRSNRF 123 (365)
Q Consensus 116 L~L~~N~l 123 (365)
|.++.|.+
T Consensus 151 lHmS~N~~ 158 (418)
T KOG2982|consen 151 LHMSDNSL 158 (418)
T ss_pred hhhccchh
Confidence 99998854
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.64 E-value=0.00011 Score=61.00 Aligned_cols=106 Identities=25% Similarity=0.321 Sum_probs=74.0
Q ss_pred CEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeecc
Q 017800 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (365)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 121 (365)
+.++|.+.++. .+-.-=..+.+...+||++|.+.. + ..|..++.|.+|.+++|+|+..-|.--..+++|+.|.|.+|
T Consensus 22 ~e~~LR~lkip-~ienlg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIENLGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccc-chhhccccccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 44566655554 111111123467789999999873 3 36778899999999999999877765556788999999999
Q ss_pred ccccccCCCCCccCCCCccEEEcCCCcccC
Q 017800 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (365)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~ 151 (365)
.+... .+-..+..++.|+.|.+-+|+++.
T Consensus 99 si~~l-~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 99 SIQEL-GDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred chhhh-hhcchhccCCccceeeecCCchhc
Confidence 88532 222223678899999988888764
No 58
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=3.1e-06 Score=74.06 Aligned_cols=140 Identities=21% Similarity=0.156 Sum_probs=77.1
Q ss_pred CCcccEEEccCCCCCCcCC---CCCCCCcEEECCCC---------------CCCCEEEccCCcCcccCCcCc-c-CCCCc
Q 017800 6 IATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN---------------LTHKVLDMRMNNFNGKIPRKF-V-KSCNL 65 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N---------------~~L~~L~Ls~N~l~~~~p~~~-~-~l~~L 65 (365)
+.+|+.|.|.++++...+- ..-.+|+.|+++.+ +.|..|+|+.+.+........ . --.+|
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l 288 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL 288 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence 3455555555555554433 34455666666655 556666666665553321111 1 12355
Q ss_pred CEEEccCCcCc---cCCCccCcCCCCCCEEEccCCc-CCCCCChhhcCCCCCcEEEeeccccccccCCCC-CccCCCCcc
Q 017800 66 TSLNLNGNRLE---GPLPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEILPELQVLILRSNRFWGPIGENT-TIVPFPSLR 140 (365)
Q Consensus 66 ~~L~L~~N~l~---~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~~~l~~L~ 140 (365)
+.|+|++..=. ..+..--..+++|.+|||++|- ++......|..++.|++|.++.|.. .+|+.+ .+...++|.
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~ 366 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLV 366 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceE
Confidence 66666654311 1111112357788888888754 4443344566778888888887763 455433 346678888
Q ss_pred EEEcCCC
Q 017800 141 IIDLSHN 147 (365)
Q Consensus 141 ~L~ls~N 147 (365)
+||+.+.
T Consensus 367 yLdv~g~ 373 (419)
T KOG2120|consen 367 YLDVFGC 373 (419)
T ss_pred EEEeccc
Confidence 8887553
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=2.4e-05 Score=78.60 Aligned_cols=114 Identities=20% Similarity=0.241 Sum_probs=69.7
Q ss_pred CCCCEEEccCCcCccc-CCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCC-CCChhhcCCCCCcEE
Q 017800 39 LTHKVLDMRMNNFNGK-IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVL 116 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L 116 (365)
|+|+.|.+++-.+... .-....++++|..||+|+.+++.. .+++.+++|+.|.+.+=.+.. ..-..+..+++|+.|
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 4556666666554321 122334567788888888887743 567777888887777655543 111245678888888
Q ss_pred Eeecccccccc------CCCCCccCCCCccEEEcCCCcccCccchh
Q 017800 117 ILRSNRFWGPI------GENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (365)
Q Consensus 117 ~L~~N~l~~~~------~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 156 (365)
|+|..+..... -+.. ..+|.|+.||.|++.+.+..-..
T Consensus 226 DIS~~~~~~~~~ii~qYlec~--~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECG--MVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred eccccccccchHHHHHHHHhc--ccCccccEEecCCcchhHHHHHH
Confidence 88876543211 1122 45788888888888777654444
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.47 E-value=7e-05 Score=75.28 Aligned_cols=118 Identities=22% Similarity=0.244 Sum_probs=89.4
Q ss_pred CcccEEEccCCCCCCcCC-----CCCCCCcEEECCCC--------------CCCCEEEccCCcCcccCCcCccCCCCcCE
Q 017800 7 ATLYYLDLSNNFLTNIEY-----FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~-----~~~~~L~~L~ls~N--------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 67 (365)
.+|++||+++...-.... ..+|+|+.|.+++- ++|..||+|+.+++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 478999998865543322 66899999988874 8999999999999843 56889999999
Q ss_pred EEccCCcCcc-CCCccCcCCCCCCEEEccCCcCCCCCCh-------hhcCCCCCcEEEeecccccccc
Q 017800 68 LNLNGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNFPN-------WLEILPELQVLILRSNRFWGPI 127 (365)
Q Consensus 68 L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~-------~l~~l~~L~~L~L~~N~l~~~~ 127 (365)
|.+.+=.+.. ..-..+.++++|+.||+|....... +. .-..+|+|+.||.+++.+.+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 9988866652 1123567899999999999876552 22 1235899999999998876543
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.00045 Score=59.69 Aligned_cols=93 Identities=18% Similarity=0.207 Sum_probs=61.0
Q ss_pred CCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCC--cCCCCCChhhcCCCCCcEEEeeccccccccCCCC-
Q 017800 55 IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN--QINDNFPNWLEILPELQVLILRSNRFWGPIGENT- 131 (365)
Q Consensus 55 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N--~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~- 131 (365)
+....-.+..|+.|.+.+..++.. ..+..+++|+.|.++.| ++.+-++.....+++|++|++++|++.- ++.+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence 445555566677777777776632 34566778888888888 5555555555566888888888888742 2221
Q ss_pred CccCCCCccEEEcCCCcccC
Q 017800 132 TIVPFPSLRIIDLSHNEFTG 151 (365)
Q Consensus 132 ~~~~l~~L~~L~ls~N~l~~ 151 (365)
....+.+|..||+.+|..+.
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcchhhhhcccCCccc
Confidence 12566778888888877654
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.97 E-value=0.0043 Score=48.52 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=47.0
Q ss_pred CCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEee
Q 017800 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (365)
Q Consensus 40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 119 (365)
+|+.+.+.. .+......+|..+.+|+.+.+.++ +...-...|.++.+|+.+.+.+ .+.......|..+++|+.+.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 445555553 344344456666767777777664 5544445666776777777755 4433334456667777777775
Q ss_pred ccccccccCCCCCccCCCCccEEEcCC
Q 017800 120 SNRFWGPIGENTTIVPFPSLRIIDLSH 146 (365)
Q Consensus 120 ~N~l~~~~~~~~~~~~l~~L~~L~ls~ 146 (365)
.+ +.......+ .+. .|+.+.+..
T Consensus 90 ~~-~~~i~~~~f--~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 90 SN-ITEIGSSSF--SNC-NLKEINIPS 112 (129)
T ss_dssp TT--BEEHTTTT--TT--T--EEE-TT
T ss_pred cc-ccEEchhhh--cCC-CceEEEECC
Confidence 54 332222222 454 667766654
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.79 E-value=0.0089 Score=46.69 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=53.8
Q ss_pred CcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccC
Q 017800 56 PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVP 135 (365)
Q Consensus 56 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 135 (365)
..+|.++.+|+.+.+.. .+...-...|.++++|+.+.+.++ +.......|..+++|+.+.+.+ .+....... |..
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~--F~~ 79 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNA--FSN 79 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTT--TTT
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccc--ccc
Confidence 35678888999999885 566566678889999999999885 6665556788888899999965 332222232 367
Q ss_pred CCCccEEEcCCC
Q 017800 136 FPSLRIIDLSHN 147 (365)
Q Consensus 136 l~~L~~L~ls~N 147 (365)
+++|+.+++..+
T Consensus 80 ~~~l~~i~~~~~ 91 (129)
T PF13306_consen 80 CTNLKNIDIPSN 91 (129)
T ss_dssp -TTECEEEETTT
T ss_pred cccccccccCcc
Confidence 889999988765
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.77 E-value=0.00076 Score=58.33 Aligned_cols=100 Identities=26% Similarity=0.296 Sum_probs=63.9
Q ss_pred CEEEccCCcCcccCCcCccCCCCcCEEEccCC--cCccCCCccCcCCCCCCEEEccCCcCCCCCChh---hcCCCCCcEE
Q 017800 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN--RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNW---LEILPELQVL 116 (365)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N--~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~---l~~l~~L~~L 116 (365)
+.|++.+..++.. ..|-.+++|++|.++.| ++.+.++.-...+++|++|++++|++.. ++. +..+.+|..|
T Consensus 46 e~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 46 ELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSL 121 (260)
T ss_pred hhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhh
Confidence 4455555555421 23456778888889888 6666666556667889999999998874 333 3456678888
Q ss_pred EeeccccccccC-CCCCccCCCCccEEEcC
Q 017800 117 ILRSNRFWGPIG-ENTTIVPFPSLRIIDLS 145 (365)
Q Consensus 117 ~L~~N~l~~~~~-~~~~~~~l~~L~~L~ls 145 (365)
++.+|..+..-- ....|.-+++|++||-.
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhcccccc
Confidence 888887654111 01123557788777643
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=3.7e-05 Score=66.85 Aligned_cols=63 Identities=30% Similarity=0.378 Sum_probs=31.2
Q ss_pred CCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCC-hhhcCCCCCcEEEeecccccc
Q 017800 61 KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWG 125 (365)
Q Consensus 61 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~ 125 (365)
.|+.|+.|.|+-|+|+..- .+..|++|++|+|..|.|..... ..+.++++|+.|+|..|.-.|
T Consensus 39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence 3455555555555555332 24455555555555555544111 123455555555555555443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=3.9e-05 Score=66.70 Aligned_cols=105 Identities=27% Similarity=0.254 Sum_probs=80.1
Q ss_pred CCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccE
Q 017800 62 SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRI 141 (365)
Q Consensus 62 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 141 (365)
+.+.+.|++.++.++.+ .....++.|+.|.|+-|+|+..- .+..|++|+.|+|+.|.|.. +.+-.-+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhh
Confidence 55678899999999843 34567899999999999998754 47889999999999999853 222222478999999
Q ss_pred EEcCCCcccCccchhh----hhhhhhhcccCCCc
Q 017800 142 IDLSHNEFTGVLLTGY----LDNFKAMMHGNNIS 171 (365)
Q Consensus 142 L~ls~N~l~~~~~~~~----~~~l~~L~~l~~~~ 171 (365)
|-|..|+-.|..+... +..+++|+.+++..
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 9999999887755442 45567777766633
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.42 E-value=0.0013 Score=34.28 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=16.5
Q ss_pred heeeEEcCCCccccCCChhhhcc
Q 017800 206 IFMTIDLSSNKFQGGIPEVVGKL 228 (365)
Q Consensus 206 ~L~~L~Ls~N~l~~~~p~~l~~l 228 (365)
+|++|||++|+|+ .+|++|+++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4788899999888 777776653
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.30 E-value=0.0016 Score=33.92 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=9.1
Q ss_pred CCEEEccCCcCcccCCcCcc
Q 017800 41 HKVLDMRMNNFNGKIPRKFV 60 (365)
Q Consensus 41 L~~L~Ls~N~l~~~~p~~~~ 60 (365)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 345555555555 4444443
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.45 E-value=7.1e-05 Score=72.02 Aligned_cols=164 Identities=26% Similarity=0.272 Sum_probs=96.2
Q ss_pred CCCCEEEccCCcCcccCCc----CccCC-CCcCEEEccCCcCccC----CCccCcCCCCCCEEEccCCcCCC----CCCh
Q 017800 39 LTHKVLDMRMNNFNGKIPR----KFVKS-CNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQIND----NFPN 105 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~----~~~~l-~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~----~~p~ 105 (365)
..|+.|++++|.+.+.--. .+... +.+++|++..|.+++. +...+.....++.++++.|.+.. .++.
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~ 194 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ 194 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence 4457788888888732211 12222 5677788888888754 44556667888888888888742 1222
Q ss_pred hhc----CCCCCcEEEeeccccccccCC--CCCccCCCC-ccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccC
Q 017800 106 WLE----ILPELQVLILRSNRFWGPIGE--NTTIVPFPS-LRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMT 178 (365)
Q Consensus 106 ~l~----~l~~L~~L~L~~N~l~~~~~~--~~~~~~l~~-L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 178 (365)
.+. ...++++|.+.+|.++..... ...+...+. ++.+++++|.+.+..- ..-.+.+..
T Consensus 195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~---~~L~~~l~~------------ 259 (478)
T KOG4308|consen 195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV---EKLLPCLSV------------ 259 (478)
T ss_pred hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH---HHHHHHhcc------------
Confidence 232 356677777777766421110 011133344 5567777777654311 111111110
Q ss_pred CCCCCCccceEEEEEeccccchhhhh-hheeeEEcCCCccccCCC----hhhhcccccccccCcCCCcc
Q 017800 179 PLNSSNYYESIILTIKGIDIKMERIL-TIFMTIDLSSNKFQGGIP----EVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~L~ 242 (365)
+ ..+++++++.|.|+.... +.+...+.++.|.++.|.+.
T Consensus 260 -------------------------~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 260 -------------------------LSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred -------------------------cchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 2 456888999999886543 44556678888888888877
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.16 E-value=0.00035 Score=67.29 Aligned_cols=173 Identities=23% Similarity=0.220 Sum_probs=93.1
Q ss_pred CCEEEccCCcCcccCC----cCccCCCCcCEEEccCCcCccCCC----ccCcCC-CCCCEEEccCCcCCCCC----Chhh
Q 017800 41 HKVLDMRMNNFNGKIP----RKFVKSCNLTSLNLNGNRLEGPLP----PSLVNC-HHLEVLNVGNNQINDNF----PNWL 107 (365)
Q Consensus 41 L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p----~~l~~l-~~L~~L~L~~N~l~~~~----p~~l 107 (365)
+..|+|.+|.+..... ..+.....|+.|++++|.+.+.-. ..+... ..|++|++..+.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5566666666654322 234455667777777777663211 122222 45566666666665432 2334
Q ss_pred cCCCCCcEEEeeccccc--cc--cCCCC--CccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCC
Q 017800 108 EILPELQVLILRSNRFW--GP--IGENT--TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN 181 (365)
Q Consensus 108 ~~l~~L~~L~L~~N~l~--~~--~~~~~--~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~ 181 (365)
.....++.++++.|.+. |. ++..+ .+....++++|.++++.++.. ++..-...+..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~---~c~~l~~~l~~--------------- 230 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSS---SCALLDEVLAS--------------- 230 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChH---HHHHHHHHHhc---------------
Confidence 44556666666666652 11 11111 012345566666666665521 10000000000
Q ss_pred CCCccceEEEEEeccccchhhhhhheeeEEcCCCccccC----CChhhhcc-cccccccCcCCCcc--------------
Q 017800 182 SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG----IPEVVGKL-NLLKGLNISHNNLT-------------- 242 (365)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~L~-------------- 242 (365)
.-..+..+++..|++.+. ....+..+ ..++.++++.|.|+
T Consensus 231 ---------------------~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~ 289 (478)
T KOG4308|consen 231 ---------------------GESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSC 289 (478)
T ss_pred ---------------------cchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhh
Confidence 012255689999998754 23344555 67899999999988
Q ss_pred ----EEECccCccc
Q 017800 243 ----VLNLSYNQFE 252 (365)
Q Consensus 243 ----~L~ls~N~l~ 252 (365)
.+.+++|.+.
T Consensus 290 ~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 290 RQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHhhcccCccc
Confidence 7888999885
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.56 E-value=0.05 Score=26.19 Aligned_cols=13 Identities=69% Similarity=0.682 Sum_probs=4.9
Q ss_pred cccEEEccCCCCC
Q 017800 8 TLYYLDLSNNFLT 20 (365)
Q Consensus 8 ~L~~L~Ls~N~l~ 20 (365)
+|+.|++++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3445555555444
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.47 E-value=0.0022 Score=54.62 Aligned_cols=81 Identities=21% Similarity=0.148 Sum_probs=34.2
Q ss_pred CCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEE
Q 017800 63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRII 142 (365)
Q Consensus 63 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 142 (365)
...+.||++.|++. .+-..|.-++.|..||++.|++.- .|..++.+..+..+++.+|..+ ..|.++ +..+.++.+
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~-~~p~s~--~k~~~~k~~ 116 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHS-QQPKSQ--KKEPHPKKN 116 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchh-hCCccc--cccCCcchh
Confidence 34444444444443 222233334444444444444433 4444444444444444444432 233333 444444444
Q ss_pred EcCCCc
Q 017800 143 DLSHNE 148 (365)
Q Consensus 143 ~ls~N~ 148 (365)
++-.|.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 444444
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.93 E-value=0.035 Score=29.37 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=14.3
Q ss_pred hheeeEEcCCCccccCCChhhh
Q 017800 205 TIFMTIDLSSNKFQGGIPEVVG 226 (365)
Q Consensus 205 ~~L~~L~Ls~N~l~~~~p~~l~ 226 (365)
++|++|+|++|+|++..+.+++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 5678888888888866555543
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.71 E-value=0.16 Score=27.29 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=7.7
Q ss_pred CCCCEEEccCCcCCC
Q 017800 87 HHLEVLNVGNNQIND 101 (365)
Q Consensus 87 ~~L~~L~L~~N~l~~ 101 (365)
++|++|+|++|+++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555555544
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.71 E-value=0.16 Score=27.29 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=7.7
Q ss_pred CCCCEEEccCCcCCC
Q 017800 87 HHLEVLNVGNNQIND 101 (365)
Q Consensus 87 ~~L~~L~L~~N~l~~ 101 (365)
++|++|+|++|+++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555555544
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.81 E-value=0.21 Score=26.88 Aligned_cols=15 Identities=40% Similarity=0.581 Sum_probs=10.2
Q ss_pred CCcCEEEccCCcCcc
Q 017800 63 CNLTSLNLNGNRLEG 77 (365)
Q Consensus 63 ~~L~~L~L~~N~l~~ 77 (365)
++|+.|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 466777777777773
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.81 E-value=0.21 Score=26.88 Aligned_cols=15 Identities=40% Similarity=0.581 Sum_probs=10.2
Q ss_pred CCcCEEEccCCcCcc
Q 017800 63 CNLTSLNLNGNRLEG 77 (365)
Q Consensus 63 ~~L~~L~L~~N~l~~ 77 (365)
++|+.|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 466777777777773
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.46 E-value=0.0051 Score=52.51 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=64.1
Q ss_pred CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEe
Q 017800 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 118 (365)
...+.||++.|.+. .+-..|..++.|..|+++.|++. .+|..+.....+..+++.+|..+. .|.+++..+.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchhhh
Confidence 45577788887776 44455677778888888888887 678888888888888888888876 7888888888888888
Q ss_pred eccccc
Q 017800 119 RSNRFW 124 (365)
Q Consensus 119 ~~N~l~ 124 (365)
-+|.++
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 888764
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.45 E-value=0.83 Score=24.72 Aligned_cols=15 Identities=40% Similarity=0.434 Sum_probs=8.5
Q ss_pred CcccEEEccCCCCCC
Q 017800 7 ATLYYLDLSNNFLTN 21 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~ 21 (365)
++|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455666666665543
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.36 E-value=0.27 Score=41.32 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=24.4
Q ss_pred hhheeeEEcCCC-ccccCCChhhhcccccccccCcC
Q 017800 204 LTIFMTIDLSSN-KFQGGIPEVVGKLNLLKGLNISH 238 (365)
Q Consensus 204 l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~ 238 (365)
.++|+.|++++| +||...-..+..+++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 467777888876 57766666677777777776653
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=82.34 E-value=0.35 Score=45.07 Aligned_cols=108 Identities=20% Similarity=0.175 Sum_probs=59.6
Q ss_pred CCCCEEEccCCc-CcccCCcCc-cCCCCcCEEEccCCcCcc--CCCccCcCCCCCCEEEccCCcCCCCC-----ChhhcC
Q 017800 39 LTHKVLDMRMNN-FNGKIPRKF-VKSCNLTSLNLNGNRLEG--PLPPSLVNCHHLEVLNVGNNQINDNF-----PNWLEI 109 (365)
Q Consensus 39 ~~L~~L~Ls~N~-l~~~~p~~~-~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~-----p~~l~~ 109 (365)
.+|++|.++.++ |+..--..+ .+...|+.+++..+.... .+..--.+++.|+.|.++++...... ...-..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 456666666554 221111112 245678888887776541 12222346788888888877553211 122234
Q ss_pred CCCCcEEEeecccccc-ccCCCCCccCCCCccEEEcCCCc
Q 017800 110 LPELQVLILRSNRFWG-PIGENTTIVPFPSLRIIDLSHNE 148 (365)
Q Consensus 110 l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~ls~N~ 148 (365)
+..|..+-|+++.... ..-+.. ...++|+.+++-..+
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l--~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHL--SICRNLERIELIDCQ 437 (483)
T ss_pred ccccceeeecCCCCchHHHHHHH--hhCcccceeeeechh
Confidence 6678888888887531 111222 556778877776654
No 82
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=82.25 E-value=1.7 Score=26.15 Aligned_cols=10 Identities=10% Similarity=-0.130 Sum_probs=4.3
Q ss_pred eEEEeeeeeh
Q 017800 311 KFAKMGYGSG 320 (365)
Q Consensus 311 ~~~~~~~~~~ 320 (365)
..+++|+++-
T Consensus 11 vaIa~~VvVP 20 (40)
T PF08693_consen 11 VAIAVGVVVP 20 (40)
T ss_pred EEEEEEEEec
Confidence 3444444443
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=80.55 E-value=0.29 Score=47.33 Aligned_cols=110 Identities=24% Similarity=0.135 Sum_probs=58.6
Q ss_pred CCCCEEEccCCcCccc--CCcCccCCCCcCEEEccCC-cCccCC----CccCcCCCCCCEEEccCCc-CCCCCChhhc-C
Q 017800 39 LTHKVLDMRMNNFNGK--IPRKFVKSCNLTSLNLNGN-RLEGPL----PPSLVNCHHLEVLNVGNNQ-INDNFPNWLE-I 109 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N-~l~~~~----p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~-~ 109 (365)
+.|+.|.+..+.-... +-.....+++|+.|+++++ ...... ......+.+|+.|+++... +++..-..+. .
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 4455555555432211 2233455677788887763 111111 1233456777888888777 5554333444 3
Q ss_pred CCCCcEEEeeccc-cccccCCCCCccCCCCccEEEcCCCcc
Q 017800 110 LPELQVLILRSNR-FWGPIGENTTIVPFPSLRIIDLSHNEF 149 (365)
Q Consensus 110 l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~ls~N~l 149 (365)
+++|+.|.+.++. ++...-..+ ...+++|+.|+++.+..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHG 307 (482)
T ss_pred CCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCcc
Confidence 6788888766655 332111111 14567788888887654
No 84
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=79.93 E-value=0.68 Score=44.75 Aligned_cols=85 Identities=22% Similarity=0.142 Sum_probs=52.6
Q ss_pred CCCCEEEccCC-cCcccC----CcCccCCCCcCEEEccCCc-CccCCCccCc-CCCCCCEEEccCCc-CCCCCChh-hcC
Q 017800 39 LTHKVLDMRMN-NFNGKI----PRKFVKSCNLTSLNLNGNR-LEGPLPPSLV-NCHHLEVLNVGNNQ-INDNFPNW-LEI 109 (365)
Q Consensus 39 ~~L~~L~Ls~N-~l~~~~----p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~-~l~~L~~L~L~~N~-l~~~~p~~-l~~ 109 (365)
+.|+.|+++++ ...... ......+.+|+.|+++.+. ++...-..+. .+++|++|.+.++. +++..-.. ...
T Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 56777777763 111111 1233456888999999888 5533222333 37899999977777 55432222 346
Q ss_pred CCCCcEEEeecccc
Q 017800 110 LPELQVLILRSNRF 123 (365)
Q Consensus 110 l~~L~~L~L~~N~l 123 (365)
+++|+.|+++.+..
T Consensus 294 ~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 294 CPSLRELDLSGCHG 307 (482)
T ss_pred cCcccEEeeecCcc
Confidence 78899999997764
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=78.51 E-value=1.8 Score=23.77 Aligned_cols=13 Identities=62% Similarity=0.593 Sum_probs=6.3
Q ss_pred cccEEEccCCCCC
Q 017800 8 TLYYLDLSNNFLT 20 (365)
Q Consensus 8 ~L~~L~Ls~N~l~ 20 (365)
+|++|||++|.|+
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4445555555443
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=77.27 E-value=7.9 Score=37.03 Aligned_cols=17 Identities=35% Similarity=-0.033 Sum_probs=11.8
Q ss_pred cccEEEccCCCCCCcCC
Q 017800 8 TLYYLDLSNNFLTNIEY 24 (365)
Q Consensus 8 ~L~~L~Ls~N~l~~~~~ 24 (365)
.++++|++.|.....+|
T Consensus 215 ~lteldls~n~~Kddip 231 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIP 231 (553)
T ss_pred cccccccccCCCCccch
Confidence 46677777777766666
No 87
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=77.02 E-value=2.8 Score=33.45 Aligned_cols=14 Identities=14% Similarity=0.472 Sum_probs=5.3
Q ss_pred ehhhhhhhhhhhhh
Q 017800 319 SGLVIGLSVGYMVF 332 (365)
Q Consensus 319 ~~~~~~~~~~~~~~ 332 (365)
+++++++++++++|
T Consensus 60 g~ill~il~lvf~~ 73 (154)
T PF04478_consen 60 GPILLGILALVFIF 73 (154)
T ss_pred HHHHHHHHHhheeE
Confidence 33344433333333
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.50 E-value=1.9 Score=23.29 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=5.9
Q ss_pred cCEEEccCCcCc
Q 017800 65 LTSLNLNGNRLE 76 (365)
Q Consensus 65 L~~L~L~~N~l~ 76 (365)
|+.|++++|+++
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 444455555544
No 89
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.39 E-value=0.74 Score=38.75 Aligned_cols=80 Identities=20% Similarity=0.147 Sum_probs=40.8
Q ss_pred CCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccC-CCCCccCCCCccEEEcCCCc-ccCccchhhhhhhhhh
Q 017800 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG-ENTTIVPFPSLRIIDLSHNE-FTGVLLTGYLDNFKAM 164 (365)
Q Consensus 87 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~L~ls~N~-l~~~~~~~~~~~l~~L 164 (365)
..++.+|.++..|....-+.+..+++++.|.+.++.-.+... +.+ -...++|+.|++++|. ||.. .-.++..+++|
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknL 178 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDG-GLACLLKLKNL 178 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechh-HHHHHHHhhhh
Confidence 445666666666665444555566666666666654221100 001 0234677777777654 4432 12334555555
Q ss_pred cccC
Q 017800 165 MHGN 168 (365)
Q Consensus 165 ~~l~ 168 (365)
+.+.
T Consensus 179 r~L~ 182 (221)
T KOG3864|consen 179 RRLH 182 (221)
T ss_pred HHHH
Confidence 4443
No 90
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=64.01 E-value=2.8 Score=39.31 Aligned_cols=119 Identities=20% Similarity=0.105 Sum_probs=79.8
Q ss_pred cCCcccEEEccCCCCCCcCC-----CCCCCCcEEECCCC---------------CCCCEEEccCCcCc--ccCCcCccCC
Q 017800 5 GIATLYYLDLSNNFLTNIEY-----FPPTNMTQLNFDSN---------------LTHKVLDMRMNNFN--GKIPRKFVKS 62 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~-----~~~~~L~~L~ls~N---------------~~L~~L~Ls~N~l~--~~~p~~~~~l 62 (365)
++..|++|+.+++...+..+ ....+|+.|-++.+ ..|+.+++..+... +.+...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 46778888888775533322 56678888888777 67888888887654 2222223467
Q ss_pred CCcCEEEccCCcCccCC-----CccCcCCCCCCEEEccCCcCCC-CCChhhcCCCCCcEEEeecccc
Q 017800 63 CNLTSLNLNGNRLEGPL-----PPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRF 123 (365)
Q Consensus 63 ~~L~~L~L~~N~l~~~~-----p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l 123 (365)
+.|+.|.++++...... ...-..+..|+.+.|++..... ..-..+..+++|+.+++-+++-
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 89999999987654221 2233456789999999987643 2223455778999998887764
No 91
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=57.99 E-value=3.6 Score=27.55 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=0.0
Q ss_pred eehhhhhhhhhhhhh
Q 017800 318 GSGLVIGLSVGYMVF 332 (365)
Q Consensus 318 ~~~~~~~~~~~~~~~ 332 (365)
++|+++++++++++.
T Consensus 19 Vvgll~ailLIlf~i 33 (64)
T PF01034_consen 19 VVGLLFAILLILFLI 33 (64)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 92
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=51.61 E-value=9.5 Score=28.12 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=7.5
Q ss_pred eEEEeeeeehhhhhhhhhh
Q 017800 311 KFAKMGYGSGLVIGLSVGY 329 (365)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~ 329 (365)
.++.+++++.+++++++++
T Consensus 67 aiagi~vg~~~~v~~lv~~ 85 (96)
T PTZ00382 67 AIAGISVAVVAVVGGLVGF 85 (96)
T ss_pred cEEEEEeehhhHHHHHHHH
Confidence 3444444433334333333
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.06 E-value=8.4 Score=37.57 Aligned_cols=37 Identities=30% Similarity=0.350 Sum_probs=23.2
Q ss_pred CCCCEEEccCC--cCcccCCcCcc--CCCCcCEEEccCCcCcc
Q 017800 39 LTHKVLDMRMN--NFNGKIPRKFV--KSCNLTSLNLNGNRLEG 77 (365)
Q Consensus 39 ~~L~~L~Ls~N--~l~~~~p~~~~--~l~~L~~L~L~~N~l~~ 77 (365)
++|+.|+|++| .+... .++. +...|++|-+.+|.+..
T Consensus 244 pklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 244 PKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred chhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 66777888888 33311 1122 23458899999998863
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.07 E-value=11 Score=36.70 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=48.6
Q ss_pred CCCCEEEccCCcCccc--CCcCccCCCCcCEEEccCC--cCccCCCccCcC--CCCCCEEEccCCcCCCCCCh---hh--
Q 017800 39 LTHKVLDMRMNNFNGK--IPRKFVKSCNLTSLNLNGN--RLEGPLPPSLVN--CHHLEVLNVGNNQINDNFPN---WL-- 107 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N--~l~~~~p~~l~~--l~~L~~L~L~~N~l~~~~p~---~l-- 107 (365)
+.+..+.|++|++... +..--...++|..|+|++| .+.. ...+.+ ...|++|-+.+|.+...... .+
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 5667778888887632 1112234689999999999 4432 223333 35688999999999765431 11
Q ss_pred --cCCCCCcEEE
Q 017800 108 --EILPELQVLI 117 (365)
Q Consensus 108 --~~l~~L~~L~ 117 (365)
...|+|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 2467776654
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=38.46 E-value=16 Score=42.62 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=25.6
Q ss_pred EcCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 211 DLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 211 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888666677788888888888888766
No 96
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=37.45 E-value=17 Score=29.06 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=14.9
Q ss_pred EEEeeeeehhhhhhhhhhhhhC
Q 017800 312 FAKMGYGSGLVIGLSVGYMVFG 333 (365)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~ 333 (365)
-++||+++|+.+.++++++++.
T Consensus 49 nIVIGvVVGVGg~ill~il~lv 70 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALV 70 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhh
Confidence 4667888888777666655543
No 97
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=37.08 E-value=17 Score=34.58 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=13.9
Q ss_pred eeEEEeeeeehhhhhhhhhhhh
Q 017800 310 WKFAKMGYGSGLVIGLSVGYMV 331 (365)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~ 331 (365)
..++.|++++++||+.+|+++.
T Consensus 367 gaIaGIsvavvvvVgglvGfLc 388 (397)
T PF03302_consen 367 GAIAGISVAVVVVVGGLVGFLC 388 (397)
T ss_pred cceeeeeehhHHHHHHHHHHHh
Confidence 4556666666666666666665
No 98
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=34.40 E-value=27 Score=18.39 Aligned_cols=10 Identities=50% Similarity=0.451 Sum_probs=4.1
Q ss_pred cccEEEccCC
Q 017800 8 TLYYLDLSNN 17 (365)
Q Consensus 8 ~L~~L~Ls~N 17 (365)
+|++|+|+++
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 3444444443
No 99
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=34.06 E-value=27 Score=40.99 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=28.5
Q ss_pred EccCCcCccCCCccCcCCCCCCEEEccCCcCCC
Q 017800 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND 101 (365)
Q Consensus 69 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 101 (365)
||++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999997777788889999999999998865
No 100
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=32.51 E-value=26 Score=26.98 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=0.0
Q ss_pred ehhhhhhhhhhhhhCC
Q 017800 319 SGLVIGLSVGYMVFGT 334 (365)
Q Consensus 319 ~~~~~~~~~~~~~~~~ 334 (365)
++++++++.+++++++
T Consensus 88 v~lVl~llsg~lv~rr 103 (129)
T PF12191_consen 88 VVLVLALLSGFLVWRR 103 (129)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444444445555443
No 101
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=32.01 E-value=6.1 Score=36.07 Aligned_cols=16 Identities=6% Similarity=0.061 Sum_probs=7.6
Q ss_pred hhhhhhCCCCcchhhh
Q 017800 327 VGYMVFGTGKPRWLVR 342 (365)
Q Consensus 327 ~~~~~~~~~~~~w~~~ 342 (365)
+++++.+||.+++|.+
T Consensus 290 iaYli~Rrr~~~gYq~ 305 (306)
T PF01299_consen 290 IAYLIGRRRSRAGYQS 305 (306)
T ss_pred HhheeEeccccccccc
Confidence 3444444455555643
No 102
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.77 E-value=4.4 Score=31.28 Aligned_cols=6 Identities=33% Similarity=0.722 Sum_probs=2.2
Q ss_pred ehhhhh
Q 017800 319 SGLVIG 324 (365)
Q Consensus 319 ~~~~~~ 324 (365)
+|+++|
T Consensus 71 ~gv~aG 76 (122)
T PF01102_consen 71 FGVMAG 76 (122)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 103
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=31.25 E-value=15 Score=27.62 Aligned_cols=12 Identities=8% Similarity=0.027 Sum_probs=0.0
Q ss_pred CCcchhhhhHhh
Q 017800 335 GKPRWLVRMIEK 346 (365)
Q Consensus 335 ~~~~w~~~~~~~ 346 (365)
+||.=|.++.++
T Consensus 48 kRRSGYk~L~~k 59 (118)
T PF14991_consen 48 KRRSGYKTLRDK 59 (118)
T ss_dssp ------------
T ss_pred eecchhhhhhhc
Confidence 344445555443
No 104
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=29.58 E-value=27 Score=21.53 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=11.8
Q ss_pred CCCcchhhhhHhhhc
Q 017800 334 TGKPRWLVRMIEKYQ 348 (365)
Q Consensus 334 ~~~~~w~~~~~~~~~ 348 (365)
-+.+.||.+||.++.
T Consensus 23 d~~kDWYktMFkqIH 37 (47)
T PF02208_consen 23 DRPKDWYKTMFKQIH 37 (47)
T ss_pred cchhHHHHHHHHHHH
Confidence 367899999998764
No 105
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=26.54 E-value=38 Score=28.38 Aligned_cols=24 Identities=13% Similarity=-0.007 Sum_probs=14.3
Q ss_pred ceeEEEeeeeehhhhhhhhhhhhh
Q 017800 309 DWKFAKMGYGSGLVIGLSVGYMVF 332 (365)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~ 332 (365)
.+..++|++-++++++++++++++
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~~~~ 179 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMYGFF 179 (189)
T ss_pred cceeEEEEccHHHHHHHHHHHhhh
Confidence 456777777666665554444443
No 106
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=23.99 E-value=55 Score=31.59 Aligned_cols=93 Identities=19% Similarity=0.111 Sum_probs=46.4
Q ss_pred CcccEEEccCCCCCCcCCCCCC-CCcEEECCCC----------------CCCCEEEccCCcCcccCCcCccCC---CCcC
Q 017800 7 ATLYYLDLSNNFLTNIEYFPPT-NMTQLNFDSN----------------LTHKVLDMRMNNFNGKIPRKFVKS---CNLT 66 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~~~~~-~L~~L~ls~N----------------~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~ 66 (365)
+.++++|++.|.+....|..+. .---+.++.+ ..+.+++|+.|.....+|..+..+ ..++
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~ 244 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLF 244 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhh
Confidence 3456778888877766551110 0000223333 456677777776666666543321 2355
Q ss_pred EEEccCCcCcc---CCCccCcCCCCCCEEEccCCcC
Q 017800 67 SLNLNGNRLEG---PLPPSLVNCHHLEVLNVGNNQI 99 (365)
Q Consensus 67 ~L~L~~N~l~~---~~p~~l~~l~~L~~L~L~~N~l 99 (365)
.++.+...+.- .-+-..+.-+.|++.+++.|..
T Consensus 245 ~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 245 KLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccchhhcccccccccccccchhhhccCCC
Confidence 55555544431 1122233345666666666654
No 107
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=22.66 E-value=28 Score=33.48 Aligned_cols=10 Identities=10% Similarity=-0.253 Sum_probs=0.0
Q ss_pred hCCCCcchhh
Q 017800 332 FGTGKPRWLV 341 (365)
Q Consensus 332 ~~~~~~~w~~ 341 (365)
.++++|+|+-
T Consensus 377 ~~rrrR~~~~ 386 (439)
T PF02480_consen 377 RCRRRRRQRD 386 (439)
T ss_dssp ----------
T ss_pred eehhcccccc
Confidence 3444555554
No 108
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.77 E-value=8.6 Score=29.62 Aligned_cols=20 Identities=35% Similarity=0.968 Sum_probs=10.5
Q ss_pred eeEEEeeeeehhhhhhhhhhhhhC
Q 017800 310 WKFAKMGYGSGLVIGLSVGYMVFG 333 (365)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~ 333 (365)
|.++++ |+|||+++++++.+
T Consensus 8 W~~a~i----gLvvGi~IG~li~R 27 (138)
T COG3105 8 WEYALI----GLVVGIIIGALIAR 27 (138)
T ss_pred HHHHHH----HHHHHHHHHHHHHH
Confidence 555544 45555555555543
No 109
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=21.75 E-value=33 Score=24.90 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=7.2
Q ss_pred ceeEEEeeeeehh
Q 017800 309 DWKFAKMGYGSGL 321 (365)
Q Consensus 309 ~~~~~~~~~~~~~ 321 (365)
.|.+++.|.++.+
T Consensus 41 yWpyLA~GGG~iL 53 (98)
T PF07204_consen 41 YWPYLAAGGGLIL 53 (98)
T ss_pred hhHHhhccchhhh
Confidence 3677766644333
No 110
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=21.04 E-value=13 Score=29.47 Aligned_cols=10 Identities=10% Similarity=0.371 Sum_probs=4.5
Q ss_pred hhhHhhhccc
Q 017800 341 VRMIEKYQSN 350 (365)
Q Consensus 341 ~~~~~~~~~~ 350 (365)
.++++|...+
T Consensus 44 PkflqRRssk 53 (158)
T PF11770_consen 44 PKFLQRRSSK 53 (158)
T ss_pred HHHHHhhhhh
Confidence 3455544433
No 111
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=20.79 E-value=53 Score=20.75 Aligned_cols=15 Identities=13% Similarity=0.437 Sum_probs=11.2
Q ss_pred CcchhhhhHhhhccc
Q 017800 336 KPRWLVRMIEKYQSN 350 (365)
Q Consensus 336 ~~~w~~~~~~~~~~~ 350 (365)
-..||.+|+++..++
T Consensus 28 ~~dWYk~MfkqiHk~ 42 (50)
T smart00459 28 PKDWYRTMFKQIHRK 42 (50)
T ss_pred HHHHHHHHHHHHHcc
Confidence 355999999887654
Done!