Query 017800
Match_columns 365
No_of_seqs 430 out of 3281
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 05:09:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.5E-38 8.5E-43 322.4 20.3 280 6-289 393-753 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 3.9E-34 1.3E-38 261.4 12.7 241 7-284 50-312 (313)
3 3rgz_A Protein brassinosteroid 100.0 2.7E-31 9.1E-36 270.7 17.5 263 8-273 369-715 (768)
4 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-31 4.8E-36 275.4 14.8 77 201-279 476-564 (844)
5 3v47_A TOLL-like receptor 5B a 100.0 2.3E-30 8E-35 248.2 17.0 273 7-279 30-412 (455)
6 2id5_A Lingo-1, leucine rich r 100.0 2.7E-29 9.4E-34 242.4 17.0 270 7-279 32-337 (477)
7 3t6q_A CD180 antigen; protein- 100.0 8E-29 2.7E-33 246.0 18.0 270 8-279 255-564 (606)
8 1ogq_A PGIP-2, polygalacturona 100.0 2.4E-29 8.3E-34 229.6 10.8 211 5-240 74-302 (313)
9 3v47_A TOLL-like receptor 5B a 100.0 2.7E-28 9.2E-33 233.8 16.9 254 5-259 52-415 (455)
10 1ziw_A TOLL-like receptor 3; i 100.0 5E-28 1.7E-32 243.4 18.0 261 5-279 327-626 (680)
11 2id5_A Lingo-1, leucine rich r 100.0 2E-28 6.7E-33 236.4 13.6 270 5-280 54-361 (477)
12 2z81_A CD282 antigen, TOLL-lik 99.9 2.4E-27 8.1E-32 232.6 17.5 125 7-131 26-168 (549)
13 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-27 5.9E-32 232.2 15.6 142 134-279 321-485 (520)
14 3oja_B Anopheles plasmodium-re 99.9 2.4E-27 8.3E-32 234.9 16.6 270 5-279 49-384 (597)
15 1ozn_A Reticulon 4 receptor; N 99.9 9.2E-27 3.1E-31 209.6 18.7 211 10-242 14-238 (285)
16 1ozn_A Reticulon 4 receptor; N 99.9 3.9E-27 1.3E-31 212.0 15.4 182 39-242 32-214 (285)
17 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4E-27 1.4E-31 231.8 16.9 92 7-101 52-160 (562)
18 4eco_A Uncharacterized protein 99.9 8.5E-28 2.9E-32 239.8 12.2 148 5-156 247-421 (636)
19 2z66_A Variable lymphocyte rec 99.9 1.1E-26 3.7E-31 211.3 17.6 145 7-154 28-192 (306)
20 3o6n_A APL1; leucine-rich repe 99.9 5.6E-27 1.9E-31 220.4 15.2 142 5-151 43-200 (390)
21 3t6q_A CD180 antigen; protein- 99.9 9.5E-27 3.2E-31 231.0 17.6 250 5-257 276-565 (606)
22 3o6n_A APL1; leucine-rich repe 99.9 1.5E-26 5.1E-31 217.5 18.0 241 5-277 67-354 (390)
23 1xku_A Decorin; proteoglycan, 99.9 6E-26 2.1E-30 208.5 21.2 221 8-256 32-280 (330)
24 4eco_A Uncharacterized protein 99.9 4.4E-27 1.5E-31 234.6 14.6 263 5-276 271-601 (636)
25 4g8a_A TOLL-like receptor 4; l 99.9 4.4E-26 1.5E-30 226.9 21.8 119 7-125 52-187 (635)
26 3vq2_A TLR4, TOLL-like recepto 99.9 7.5E-27 2.6E-31 231.8 16.0 249 6-280 284-563 (606)
27 3zyj_A Leucine-rich repeat-con 99.9 7.2E-26 2.5E-30 216.2 20.9 236 10-279 46-296 (440)
28 2ft3_A Biglycan; proteoglycan, 99.9 8.4E-26 2.9E-30 207.8 20.5 239 8-275 34-307 (332)
29 3zyi_A Leucine-rich repeat-con 99.9 9.8E-26 3.3E-30 216.1 21.5 236 10-279 57-307 (452)
30 2z66_A Variable lymphocyte rec 99.9 1.7E-26 5.9E-31 209.9 15.1 223 10-279 10-265 (306)
31 4ecn_A Leucine-rich repeat pro 99.9 9E-26 3.1E-30 230.2 21.4 145 5-154 489-661 (876)
32 4fcg_A Uncharacterized protein 99.9 2.7E-26 9.2E-31 210.7 14.9 132 5-152 79-221 (328)
33 2z80_A TOLL-like receptor 2, v 99.9 3.8E-26 1.3E-30 211.9 15.6 248 6-279 30-318 (353)
34 4fcg_A Uncharacterized protein 99.9 3.5E-26 1.2E-30 210.0 15.0 201 5-242 102-314 (328)
35 3zyi_A Leucine-rich repeat-con 99.9 2.5E-25 8.5E-30 213.3 19.7 154 7-165 75-245 (452)
36 2z7x_B TOLL-like receptor 1, v 99.9 9.3E-26 3.2E-30 219.9 17.0 71 202-272 321-409 (520)
37 3vq2_A TLR4, TOLL-like recepto 99.9 2.2E-25 7.5E-30 221.2 19.5 125 7-131 32-173 (606)
38 4fmz_A Internalin; leucine ric 99.9 5.3E-25 1.8E-29 203.5 20.5 238 5-256 42-304 (347)
39 2z63_A TOLL-like receptor 4, v 99.9 1.5E-25 5.1E-30 220.7 17.8 116 8-123 29-161 (570)
40 1wwl_A Monocyte differentiatio 99.9 1.7E-27 6E-32 217.2 3.2 222 5-273 41-307 (312)
41 4ecn_A Leucine-rich repeat pro 99.9 1.7E-26 5.9E-31 235.5 10.8 240 5-253 446-767 (876)
42 1ziw_A TOLL-like receptor 3; i 99.9 2E-25 6.7E-30 224.5 18.3 250 7-257 25-347 (680)
43 3j0a_A TOLL-like receptor 5; m 99.9 4.3E-26 1.5E-30 234.5 13.7 125 6-130 23-167 (844)
44 1xku_A Decorin; proteoglycan, 99.9 3.8E-25 1.3E-29 203.2 18.5 238 7-276 52-307 (330)
45 2ft3_A Biglycan; proteoglycan, 99.9 2.8E-25 9.7E-30 204.3 16.9 216 7-252 54-307 (332)
46 3rfs_A Internalin B, repeat mo 99.9 2.4E-26 8.3E-31 205.5 9.4 196 5-258 39-241 (272)
47 3zyj_A Leucine-rich repeat-con 99.9 5.2E-25 1.8E-29 210.3 18.2 211 7-241 64-291 (440)
48 2o6q_A Variable lymphocyte rec 99.9 2.9E-24 9.9E-29 191.8 20.9 178 8-242 17-194 (270)
49 2z62_A TOLL-like receptor 4, v 99.9 6.9E-25 2.4E-29 196.4 16.2 145 9-164 30-175 (276)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.4E-24 4.7E-29 213.7 19.6 142 7-156 31-190 (562)
51 2z80_A TOLL-like receptor 2, v 99.9 9.8E-25 3.4E-29 202.4 17.2 231 7-241 52-313 (353)
52 4fmz_A Internalin; leucine ric 99.9 1.7E-24 5.9E-29 200.1 18.7 254 5-273 64-344 (347)
53 2z81_A CD282 antigen, TOLL-lik 99.9 6.4E-25 2.2E-29 215.3 16.7 156 6-164 4-174 (549)
54 3bz5_A Internalin-J, INLJ; leu 99.9 2.4E-24 8.3E-29 206.4 20.2 246 5-272 40-296 (457)
55 3oja_B Anopheles plasmodium-re 99.9 6.5E-25 2.2E-29 217.5 16.2 222 25-252 48-314 (597)
56 2z62_A TOLL-like receptor 4, v 99.9 5.2E-24 1.8E-28 190.6 19.6 212 11-279 11-241 (276)
57 2z63_A TOLL-like receptor 4, v 99.9 2.2E-24 7.6E-29 212.3 18.3 140 5-147 50-210 (570)
58 1p9a_G Platelet glycoprotein I 99.9 7.7E-24 2.6E-28 190.9 19.9 132 5-152 8-139 (290)
59 3bz5_A Internalin-J, INLJ; leu 99.9 4E-24 1.4E-28 204.9 19.0 221 5-242 104-352 (457)
60 1o6v_A Internalin A; bacterial 99.9 3.4E-24 1.2E-28 206.1 18.3 255 5-273 66-386 (466)
61 1wwl_A Monocyte differentiatio 99.9 1.4E-25 4.8E-30 204.6 7.7 204 5-242 93-309 (312)
62 1o6v_A Internalin A; bacterial 99.9 1.4E-23 4.7E-28 201.9 19.5 238 5-256 44-326 (466)
63 3m19_A Variable lymphocyte rec 99.9 2E-23 7E-28 184.2 19.0 179 7-242 14-192 (251)
64 3oja_A Leucine-rich immune mol 99.9 4.9E-25 1.7E-29 212.9 9.1 195 6-242 33-227 (487)
65 1jl5_A Outer protein YOPM; leu 99.9 5.6E-23 1.9E-27 196.8 22.4 145 7-169 91-244 (454)
66 3rfs_A Internalin B, repeat mo 99.9 5.5E-24 1.9E-28 190.2 14.0 139 5-155 61-199 (272)
67 3o53_A Protein LRIM1, AGAP0063 99.9 2.9E-24 9.9E-29 196.3 11.4 192 6-242 33-227 (317)
68 2o6q_A Variable lymphocyte rec 99.9 9.6E-23 3.3E-27 181.9 20.4 179 7-239 37-215 (270)
69 1p9a_G Platelet glycoprotein I 99.9 5E-23 1.7E-27 185.6 17.8 117 40-165 11-127 (290)
70 4glp_A Monocyte differentiatio 99.9 9.9E-24 3.4E-28 192.1 12.9 204 29-274 65-306 (310)
71 3oja_A Leucine-rich immune mol 99.9 7.4E-24 2.5E-28 204.7 12.5 186 4-242 55-250 (487)
72 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-23 3.8E-28 192.4 12.5 185 5-242 56-250 (317)
73 2xwt_C Thyrotropin receptor; s 99.9 5.8E-23 2E-27 179.9 13.6 178 8-242 32-218 (239)
74 4glp_A Monocyte differentiatio 99.9 1.6E-23 5.5E-28 190.7 10.2 186 5-242 89-307 (310)
75 1jl5_A Outer protein YOPM; leu 99.9 6.1E-22 2.1E-26 189.5 20.9 224 8-257 132-377 (454)
76 3m19_A Variable lymphocyte rec 99.9 9.6E-23 3.3E-27 179.9 13.5 168 40-256 15-196 (251)
77 1h6u_A Internalin H; cell adhe 99.9 2.9E-22 9.9E-27 182.2 13.8 191 5-242 39-230 (308)
78 2o6s_A Variable lymphocyte rec 99.9 1.3E-21 4.3E-26 167.7 14.4 175 10-258 10-184 (208)
79 2ast_B S-phase kinase-associat 99.9 6.2E-23 2.1E-27 188.7 5.4 227 9-257 49-311 (336)
80 1h6u_A Internalin H; cell adhe 99.9 3.7E-22 1.3E-26 181.5 9.9 179 39-253 41-231 (308)
81 3g06_A SSPH2 (leucine-rich rep 99.9 7.7E-21 2.6E-25 187.8 19.9 235 8-274 41-296 (622)
82 3cvr_A Invasion plasmid antige 99.9 7E-21 2.4E-25 186.0 19.1 175 8-242 60-243 (571)
83 2ca6_A RAN GTPase-activating p 99.9 4.1E-23 1.4E-27 193.8 3.1 144 5-150 30-229 (386)
84 3g06_A SSPH2 (leucine-rich rep 99.9 7E-21 2.4E-25 188.1 18.0 219 7-257 61-302 (622)
85 2o6s_A Variable lymphocyte rec 99.9 3.1E-21 1.1E-25 165.2 13.0 157 42-257 10-166 (208)
86 2xwt_C Thyrotropin receptor; s 99.9 3.2E-21 1.1E-25 168.8 13.1 165 40-253 32-219 (239)
87 3goz_A Leucine-rich repeat-con 99.9 9.2E-23 3.1E-27 189.8 2.5 222 11-254 2-299 (362)
88 2xot_A Amphoterin-induced prot 99.8 1.1E-20 3.7E-25 175.7 15.8 179 10-242 21-202 (361)
89 2v9t_B SLIT homolog 2 protein 99.8 1.9E-20 6.6E-25 161.8 14.0 107 43-154 15-121 (220)
90 4g8a_A TOLL-like receptor 4; l 99.8 5.6E-20 1.9E-24 182.7 19.3 242 6-279 327-584 (635)
91 2v70_A SLIT-2, SLIT homolog 2 99.8 6.1E-20 2.1E-24 158.6 16.2 145 10-156 14-172 (220)
92 3goz_A Leucine-rich repeat-con 99.8 4.8E-22 1.6E-26 184.9 3.0 193 39-253 22-267 (362)
93 2v70_A SLIT-2, SLIT homolog 2 99.8 2.2E-20 7.5E-25 161.4 12.2 152 42-242 14-166 (220)
94 3e6j_A Variable lymphocyte rec 99.8 1.3E-19 4.6E-24 157.4 15.8 104 42-150 22-125 (229)
95 1h6t_A Internalin B; cell adhe 99.8 6E-21 2E-25 172.1 7.1 169 6-242 45-213 (291)
96 1z7x_W Ribonuclease inhibitor; 99.8 5.2E-22 1.8E-26 190.3 -0.1 144 8-152 86-271 (461)
97 2ca6_A RAN GTPase-activating p 99.8 2E-21 6.9E-26 182.2 2.4 198 5-242 58-316 (386)
98 2v9t_B SLIT homolog 2 protein 99.8 3.8E-19 1.3E-23 153.6 16.3 141 10-152 14-167 (220)
99 2xot_A Amphoterin-induced prot 99.8 2.4E-19 8.1E-24 166.6 14.5 152 42-242 21-176 (361)
100 1z7x_W Ribonuclease inhibitor; 99.8 4.1E-21 1.4E-25 184.1 2.1 214 5-242 111-383 (461)
101 1m9s_A Internalin B; cell inva 99.8 3.3E-20 1.1E-24 183.0 8.5 169 6-242 42-210 (605)
102 4ay9_X Follicle-stimulating ho 99.8 1.2E-18 4.1E-23 161.2 17.0 222 10-265 12-249 (350)
103 2ast_B S-phase kinase-associat 99.8 7.1E-21 2.4E-25 174.9 1.4 203 28-249 47-282 (336)
104 3e6j_A Variable lymphocyte rec 99.8 2.7E-18 9.3E-23 149.2 17.3 142 9-153 21-175 (229)
105 1m9s_A Internalin B; cell inva 99.8 5.7E-19 1.9E-23 174.2 14.3 128 5-152 63-190 (605)
106 1h6t_A Internalin B; cell adhe 99.8 6.2E-19 2.1E-23 158.9 12.8 128 5-152 66-193 (291)
107 4ezg_A Putative uncharacterize 99.8 2.5E-19 8.5E-24 152.0 9.3 140 5-150 42-194 (197)
108 4ezg_A Putative uncharacterize 99.8 4.9E-19 1.7E-23 150.2 10.5 150 39-242 44-194 (197)
109 3cvr_A Invasion plasmid antige 99.8 2.6E-18 8.8E-23 167.9 15.3 161 6-230 79-255 (571)
110 1w8a_A SLIT protein; signaling 99.8 2.8E-18 9.6E-23 144.9 12.4 110 42-156 11-121 (192)
111 1w8a_A SLIT protein; signaling 99.8 7.3E-18 2.5E-22 142.4 14.6 134 10-156 11-145 (192)
112 1xeu_A Internalin C; cellular 99.8 2.3E-19 7.9E-24 159.3 5.4 168 5-242 17-185 (263)
113 4ay9_X Follicle-stimulating ho 99.8 3.2E-18 1.1E-22 158.3 11.5 202 7-238 30-235 (350)
114 2wfh_A SLIT homolog 2 protein 99.7 9.7E-17 3.3E-21 135.5 15.4 131 10-154 13-143 (193)
115 4b8c_D Glucose-repressible alc 99.7 5.6E-18 1.9E-22 170.9 8.5 112 39-156 224-335 (727)
116 2o6r_A Variable lymphocyte rec 99.7 1.3E-16 4.3E-21 132.8 15.4 133 9-154 9-141 (177)
117 2ell_A Acidic leucine-rich nuc 99.7 1.7E-17 6E-22 136.8 9.1 82 41-124 26-108 (168)
118 4b8c_D Glucose-repressible alc 99.7 2.7E-18 9.3E-23 173.2 4.8 181 7-242 173-354 (727)
119 1dce_A Protein (RAB geranylger 99.7 9.4E-19 3.2E-23 171.6 1.3 109 39-154 441-550 (567)
120 2je0_A Acidic leucine-rich nuc 99.7 2.3E-17 7.8E-22 133.3 8.3 84 64-151 18-102 (149)
121 2ell_A Acidic leucine-rich nuc 99.7 2E-17 6.8E-22 136.5 8.1 136 5-152 22-162 (168)
122 1xeu_A Internalin C; cellular 99.7 1.4E-16 4.7E-21 141.3 12.9 137 5-152 39-187 (263)
123 2je0_A Acidic leucine-rich nuc 99.7 7.6E-17 2.6E-21 130.2 8.4 125 40-168 18-146 (149)
124 3ogk_B Coronatine-insensitive 99.7 2.3E-18 7.9E-23 170.1 -1.3 245 5-253 162-527 (592)
125 2wfh_A SLIT homolog 2 protein 99.7 5.2E-16 1.8E-20 131.0 13.2 107 42-154 13-119 (193)
126 2o6r_A Variable lymphocyte rec 99.7 7.3E-16 2.5E-20 128.2 13.5 133 41-222 9-141 (177)
127 3ogk_B Coronatine-insensitive 99.6 1.5E-17 5.1E-22 164.3 -1.6 39 204-242 487-526 (592)
128 1ds9_A Outer arm dynein; leuci 99.6 2.2E-18 7.4E-23 146.3 -7.5 105 41-152 20-130 (198)
129 1a9n_A U2A', U2A'; complex (nu 99.6 8.5E-16 2.9E-20 127.7 7.9 133 59-242 15-153 (176)
130 3g39_A Variable lymphocyte rec 99.6 6.2E-15 2.1E-19 121.8 12.6 109 41-154 11-119 (170)
131 1a9n_A U2A', U2A'; complex (nu 99.6 7.5E-16 2.6E-20 128.0 5.5 134 5-151 17-154 (176)
132 2r9u_A Variable lymphocyte rec 99.6 1.4E-14 4.7E-19 120.1 12.6 107 42-153 15-121 (174)
133 3g39_A Variable lymphocyte rec 99.6 1.8E-14 6.1E-19 119.0 12.6 108 8-126 10-117 (170)
134 1dce_A Protein (RAB geranylger 99.6 9.4E-15 3.2E-19 143.2 10.2 125 7-144 441-567 (567)
135 2r9u_A Variable lymphocyte rec 99.5 6.2E-14 2.1E-18 116.1 12.7 106 9-125 14-119 (174)
136 2p1m_B Transport inhibitor res 99.5 3.1E-16 1.1E-20 154.8 -1.6 138 5-144 154-345 (594)
137 3sb4_A Hypothetical leucine ri 99.5 9.9E-14 3.4E-18 126.9 11.8 205 6-235 48-327 (329)
138 1ds9_A Outer arm dynein; leuci 99.5 6.4E-17 2.2E-21 137.2 -10.6 142 5-155 16-158 (198)
139 2p1m_B Transport inhibitor res 99.4 1.6E-15 5.6E-20 149.6 -5.0 39 204-242 480-519 (594)
140 3un9_A NLR family member X1; l 99.4 3.2E-15 1.1E-19 139.0 -4.0 162 39-242 72-252 (372)
141 2ifg_A High affinity nerve gro 99.4 7.5E-13 2.6E-17 121.9 11.6 107 43-154 12-120 (347)
142 3sb4_A Hypothetical leucine ri 99.4 1.7E-13 5.9E-18 125.3 6.1 165 56-243 86-311 (329)
143 3un9_A NLR family member X1; l 99.4 3.2E-14 1.1E-18 132.3 -2.0 147 6-152 71-254 (372)
144 2ifg_A High affinity nerve gro 99.4 2.1E-12 7.3E-17 118.8 10.1 104 10-124 11-116 (347)
145 4fdw_A Leucine rich hypothetic 99.2 1.3E-10 4.4E-15 109.0 15.1 187 29-239 136-333 (401)
146 4fdw_A Leucine rich hypothetic 99.2 2.5E-10 8.6E-15 107.0 13.4 150 7-164 157-325 (401)
147 2ra8_A Uncharacterized protein 99.0 2.9E-10 9.8E-15 104.9 7.7 144 55-242 164-320 (362)
148 2ra8_A Uncharacterized protein 98.8 3.2E-09 1.1E-13 97.9 5.2 155 58-252 134-320 (362)
149 1io0_A Tropomodulin; LRR prote 98.7 1.1E-09 3.9E-14 91.2 -1.8 116 36-151 33-165 (185)
150 1io0_A Tropomodulin; LRR prote 98.6 1.6E-08 5.5E-13 84.2 2.5 116 5-124 34-164 (185)
151 3rw6_A Nuclear RNA export fact 98.6 2.7E-09 9.2E-14 93.7 -2.8 66 85-153 168-236 (267)
152 3rw6_A Nuclear RNA export fact 98.5 5.1E-08 1.8E-12 85.5 4.4 111 31-143 130-257 (267)
153 4fs7_A Uncharacterized protein 98.3 5.1E-06 1.8E-10 77.4 12.6 39 198-237 290-328 (394)
154 4fs7_A Uncharacterized protein 98.2 9.5E-06 3.2E-10 75.6 12.6 200 5-237 160-374 (394)
155 3e4g_A ATP synthase subunit S, 98.0 7.6E-07 2.6E-11 72.7 0.6 84 63-148 61-150 (176)
156 4gt6_A Cell surface protein; l 98.0 6.5E-05 2.2E-09 69.9 13.5 41 198-239 327-367 (394)
157 4gt6_A Cell surface protein; l 98.0 0.00011 3.8E-09 68.3 14.6 45 194-241 346-390 (394)
158 3e4g_A ATP synthase subunit S, 97.9 1.8E-06 6.2E-11 70.5 1.1 83 40-122 62-150 (176)
159 1pgv_A TMD-1, tropomodulin TMD 97.7 4.2E-06 1.4E-10 69.6 -0.8 113 36-150 38-170 (197)
160 4h09_A Hypothetical leucine ri 97.5 0.0018 6.1E-08 59.6 14.9 33 204-237 309-341 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 4.7E-05 1.6E-09 63.2 2.7 86 38-123 69-169 (197)
162 4h09_A Hypothetical leucine ri 97.4 0.0016 5.5E-08 59.9 12.7 124 39-169 217-340 (379)
163 3rfe_A Platelet glycoprotein I 97.1 0.00088 3E-08 51.8 6.4 33 89-121 33-65 (130)
164 3rfe_A Platelet glycoprotein I 97.1 0.0012 3.9E-08 51.1 6.6 58 42-101 11-69 (130)
165 2lz0_A Uncharacterized protein 59.6 27 0.00092 24.8 6.2 46 75-121 8-53 (100)
166 2lz0_A Uncharacterized protein 59.4 14 0.00049 26.3 4.7 46 50-96 7-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.5e-38 Score=322.45 Aligned_cols=280 Identities=29% Similarity=0.460 Sum_probs=206.8
Q ss_pred CCcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEE
Q 017800 6 IATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 69 (365)
+++|++|++++|.+++.+| ..+++|++|++++| ++|++|++++|.+++.+|..++.+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 5567777777777766665 45667777777776 5677777777777777777777777777777
Q ss_pred ccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcc
Q 017800 70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (365)
Q Consensus 70 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l 149 (365)
+++|++++.+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|+++|.+|..+ ..+++|+.|++++|.+
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCcc
Confidence 77777777777777777888888888888877777777777888888888888877777766 7778888888888888
Q ss_pred cCccchhhhhhhhhhcccCCCcc-------------------------------------------cccccC-----CCC
Q 017800 150 TGVLLTGYLDNFKAMMHGNNISV-------------------------------------------EVDYMT-----PLN 181 (365)
Q Consensus 150 ~~~~~~~~~~~l~~L~~l~~~~~-------------------------------------------~~~~~~-----~~~ 181 (365)
+|.+|..+ .....+........ ....+. ...
T Consensus 551 ~g~ip~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 551 NGTIPAAM-FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp ESBCCGGG-GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred CCcCChHH-hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 87777663 33222221111000 000000 000
Q ss_pred CCCccceEEEEEeccccch---hhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc--------------EE
Q 017800 182 SSNYYESIILTIKGIDIKM---ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT--------------VL 244 (365)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~--------------~L 244 (365)
....+..++++.+.+.+.+ +..++.|+.|+|++|+++|.+|+.++.+++|+.|||++|+++ +|
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 1123455666666655433 455889999999999999999999999999999999999876 89
Q ss_pred ECccCccccCCCCCCCCCCCCCCccCCCCCCCCcCCCCCCCCCCC
Q 017800 245 NLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCNIDEA 289 (365)
Q Consensus 245 ~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~c~~~~~ 289 (365)
|+++|+++|.||...++.+|...+|.|||++||.|+. .|.....
T Consensus 710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred ECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence 9999999999999999999999999999999999987 7876443
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.9e-34 Score=261.38 Aligned_cols=241 Identities=25% Similarity=0.366 Sum_probs=139.4
Q ss_pred CcccEEEccCCCCCC--cCC---CCCCCCcEEECCC-C-------------CCCCEEEccCCcCcccCCcCccCCCCcCE
Q 017800 7 ATLYYLDLSNNFLTN--IEY---FPPTNMTQLNFDS-N-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~--~~~---~~~~~L~~L~ls~-N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 67 (365)
.+++.|++++|.+++ .+| ..+++|++|++++ | ++|++|+|++|.+++.+|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 666 4455665555552 3 44555555555555555555555555555
Q ss_pred EEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCC-CCcEEEeeccccccccCCCCCccCCCCccEEEcCC
Q 017800 68 LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILP-ELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH 146 (365)
Q Consensus 68 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~ 146 (365)
|++++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+ ..++ |+.|++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~--~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC-CSEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--hCCc-ccEEECcC
Confidence 55555555555555555555555555555555544555555554 55555555555554444443 3333 55555555
Q ss_pred CcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccc--hhhhhhheeeEEcCCCccccCCChh
Q 017800 147 NEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK--MERILTIFMTIDLSSNKFQGGIPEV 224 (365)
Q Consensus 147 N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~ 224 (365)
|.+++..|.. +..++.|+.+++. .+.+... .+..+++|++|+|++|++++.+|..
T Consensus 207 N~l~~~~~~~-~~~l~~L~~L~L~----------------------~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 207 NMLEGDASVL-FGSDKNTQKIHLA----------------------KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp SEEEECCGGG-CCTTSCCSEEECC----------------------SSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG
T ss_pred CcccCcCCHH-HhcCCCCCEEECC----------------------CCceeeecCcccccCCCCEEECcCCcccCcCChH
Confidence 5555444432 3333333333221 1111000 0112345555555555555555555
Q ss_pred hhcccccccccCcCCCccEEECccCccccCCCCCCCCCCCCCCccCCCCCCCCcCCCCCC
Q 017800 225 VGKLNLLKGLNISHNNLTVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESC 284 (365)
Q Consensus 225 l~~l~~L~~L~Ls~N~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~c 284 (365)
++.+++|+ .|++++|+++|.+|....+..+....+.+|+.+||.|+. .|
T Consensus 264 l~~l~~L~----------~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 264 LTQLKFLH----------SLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GGGCTTCC----------EEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred HhcCcCCC----------EEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 55555444 677778888899999888888999999999999998876 46
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2.7e-31 Score=270.65 Aligned_cols=263 Identities=25% Similarity=0.359 Sum_probs=187.1
Q ss_pred cccEEEccCCCCCCcCC---CC--CCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEE
Q 017800 8 TLYYLDLSNNFLTNIEY---FP--PTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (365)
Q Consensus 8 ~L~~L~Ls~N~l~~~~~---~~--~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 69 (365)
+|++|++++|++++..| .. +++|++|++++| ++|++|++++|.+++.+|..++.+++|++|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 55556666665555444 11 556777777777 6788888888888888888888888888888
Q ss_pred ccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcc
Q 017800 70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (365)
Q Consensus 70 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l 149 (365)
+++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+ +.+++|++|++++|.+
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSF 526 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCC
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCcc
Confidence 88888888888888888888888888888888888888888888888888888888888766 7788888888888888
Q ss_pred cCccchhhhhhhhhhcccCCCccccc-c----cCCCC---CCCcc---ceEE----------------------------
Q 017800 150 TGVLLTGYLDNFKAMMHGNNISVEVD-Y----MTPLN---SSNYY---ESII---------------------------- 190 (365)
Q Consensus 150 ~~~~~~~~~~~l~~L~~l~~~~~~~~-~----~~~~~---~~~~~---~~~~---------------------------- 190 (365)
++.+|.. +..++.|+.++....... . +.... ..... ....
T Consensus 527 ~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (768)
T 3rgz_A 527 SGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605 (768)
T ss_dssp EEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG
T ss_pred cCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh
Confidence 8888866 777777776665322111 0 00000 00000 0000
Q ss_pred ------------EEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc--------------EE
Q 017800 191 ------------LTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT--------------VL 244 (365)
Q Consensus 191 ------------~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~--------------~L 244 (365)
....+..+..+..+++|+.|||++|+++|.+|.+++.++.|+.|+|++|+++ .|
T Consensus 606 ~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L 685 (768)
T 3rgz_A 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685 (768)
T ss_dssp GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence 0011111222334678999999999999999999999999999999999887 89
Q ss_pred ECccCccccCCCCCC-CCCCCCCCccCCCC
Q 017800 245 NLSYNQFEGPIPRGS-QFNTFPNDSYVGNS 273 (365)
Q Consensus 245 ~ls~N~l~g~~p~~~-~~~~~~~~~~~~n~ 273 (365)
|+++|+++|.+|... .+..+....+.+|+
T Consensus 686 dLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp ECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred ECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 999999999999752 23344444555553
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.4e-31 Score=275.37 Aligned_cols=77 Identities=27% Similarity=0.369 Sum_probs=66.4
Q ss_pred hhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc------------EEECccCccccCCCCCCCCCCCCCCc
Q 017800 201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT------------VLNLSYNQFEGPIPRGSQFNTFPNDS 268 (365)
Q Consensus 201 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~------------~L~ls~N~l~g~~p~~~~~~~~~~~~ 268 (365)
+..+++|+.|+|++|++++.+|..++.+++|+.|+|++|+|+ .||+++|++++.+|.. +..+....
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~ 553 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDV--FVSLSVLD 553 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCC--CSSCCEEE
T ss_pred hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhH--hCCcCEEE
Confidence 445788999999999999888889999999999999999886 8999999999988864 55677778
Q ss_pred cCCCCCCCCcC
Q 017800 269 YVGNSGLCGFP 279 (365)
Q Consensus 269 ~~~n~~lc~~~ 279 (365)
+.|||+.|+++
T Consensus 554 l~~Np~~C~c~ 564 (844)
T 3j0a_A 554 ITHNKFICECE 564 (844)
T ss_dssp EEEECCCCSSS
T ss_pred ecCCCcccccc
Confidence 89999999665
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=2.3e-30 Score=248.19 Aligned_cols=273 Identities=20% Similarity=0.208 Sum_probs=197.7
Q ss_pred CcccEEEccCCCCCCcCC---CCCCCCcEEECCCC--------------CCCCEEEccCCcCcccCCcCccCCCCcCEEE
Q 017800 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N--------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 69 (365)
++|++|||++|.++++.| ..+++|++|++++| ++|++|+|++|.+++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 679999999999999877 67899999999988 7899999999999988899999999999999
Q ss_pred ccCCcCccCCCcc--CcCCCCCCEEEccCCcCCCCCChh-hcCCCCCcEEEeeccccccccCCCCC--------------
Q 017800 70 LNGNRLEGPLPPS--LVNCHHLEVLNVGNNQINDNFPNW-LEILPELQVLILRSNRFWGPIGENTT-------------- 132 (365)
Q Consensus 70 L~~N~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~~~~~-------------- 132 (365)
+++|++++..|.. +..+++|++|++++|++++..|.. +..+++|++|++++|.+.+..+..+.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999999765555 899999999999999999987776 88999999999999999887766541
Q ss_pred ------------------ccCCCCccEEEcCCCcccCccchhhhhhh--hhhcccCCCcc--------------------
Q 017800 133 ------------------IVPFPSLRIIDLSHNEFTGVLLTGYLDNF--KAMMHGNNISV-------------------- 172 (365)
Q Consensus 133 ------------------~~~l~~L~~L~ls~N~l~~~~~~~~~~~l--~~L~~l~~~~~-------------------- 172 (365)
+..+++|+.|++++|.+++..|..+...+ +.++.+.....
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 11346788889999888877765532211 22222211000
Q ss_pred -------------cccccCC-----CCCCCccceEEEEEeccc---cchhhhhhheeeEEcCCCccccCCChhhhccccc
Q 017800 173 -------------EVDYMTP-----LNSSNYYESIILTIKGID---IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL 231 (365)
Q Consensus 173 -------------~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 231 (365)
....+.. ......+..+.+..+.+. ...+..+++|++|+|++|++++..|..++.+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 0000000 011123344444444333 2234456778888888888877777777888888
Q ss_pred ccccCcCCCcc--------------EEECccCccccCCCCC-CCCCCCCCCccCCCCCCCCcC
Q 017800 232 KGLNISHNNLT--------------VLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCGFP 279 (365)
Q Consensus 232 ~~L~Ls~N~L~--------------~L~ls~N~l~g~~p~~-~~~~~~~~~~~~~n~~lc~~~ 279 (365)
++|+|++|+++ +|++++|++++..+.. ..+..+....+.+|+.-|.+|
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 88888888765 7888888888644432 244556666777887777665
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=242.36 Aligned_cols=270 Identities=18% Similarity=0.132 Sum_probs=198.9
Q ss_pred CcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEc
Q 017800 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (365)
++++.|||++|+++++.+ ..+++|++|++++| ++|++|+|++|.+++..+..|.++++|++|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 478889999999888866 56788888988887 67889999999888666667888889999999
Q ss_pred cCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCccc
Q 017800 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (365)
Q Consensus 71 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~ 150 (365)
++|++++..|..|.++++|++|++++|.+++..|..|..+++|+.|++++|++++..+..+ ..+++|+.|++++|.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL--SHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH--TTCTTCCEEEEESCCCC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh--cccCCCcEEeCCCCcCc
Confidence 9998888888888888899999999988888777888888889999998888865444434 67888888888888888
Q ss_pred CccchhhhhhhhhhcccCCCccccc-cc-CCCCCCCccceEEEEEeccc---cchhhhhhheeeEEcCCCccccCCChhh
Q 017800 151 GVLLTGYLDNFKAMMHGNNISVEVD-YM-TPLNSSNYYESIILTIKGID---IKMERILTIFMTIDLSSNKFQGGIPEVV 225 (365)
Q Consensus 151 ~~~~~~~~~~l~~L~~l~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 225 (365)
+..+.. +..++.|+.++....... .+ ........+..+.+..+.+. ...+..+++|+.|+|++|.+++..+..+
T Consensus 190 ~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 190 AIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp EECTTC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred EeChhh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 765543 666666666554221100 00 00111224555666555443 2334557888999999999888888888
Q ss_pred hcccccccccCcCCCcc--------------EEECccCccccCCCCC-CCCCCCCCCccCCCCCCCCcC
Q 017800 226 GKLNLLKGLNISHNNLT--------------VLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCGFP 279 (365)
Q Consensus 226 ~~l~~L~~L~Ls~N~L~--------------~L~ls~N~l~g~~p~~-~~~~~~~~~~~~~n~~lc~~~ 279 (365)
..+++|+.|+|++|+++ .|++++|++++..+.. ..+..+....+.+|+..|.++
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 88889999999988765 7888999888654432 234456666778888877654
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=8e-29 Score=245.99 Aligned_cols=270 Identities=19% Similarity=0.173 Sum_probs=211.7
Q ss_pred cccEEEccCCCCCCcCC---CCCCCCcEEECCCC------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccC
Q 017800 8 TLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (365)
Q Consensus 8 ~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 72 (365)
+|+.|++++|.++++.+ ..+++|++|++++| ++|++|++++|.+++..|..+..+++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 78889999999988876 56788999999888 6889999999999887788888999999999999
Q ss_pred CcCccCCCcc-CcCCCCCCEEEccCCcCCCCC--ChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcc
Q 017800 73 NRLEGPLPPS-LVNCHHLEVLNVGNNQINDNF--PNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (365)
Q Consensus 73 N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l 149 (365)
|.+.+.+|.. +..+++|++|++++|.+++.. |..+..+++|++|++++|.+.+..|..+ ..+++|+.|++++|.+
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF--KECPQLELLDLAFTRL 412 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT--TTCTTCSEEECTTCCE
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh--cCCccCCeEECCCCcC
Confidence 9888666654 888899999999999988755 6778888999999999998887777766 7888999999999998
Q ss_pred cCccchhhhhhhhhhcccCCCcccccccCC--CCCCCccceEEEEEecccc------chhhhhhheeeEEcCCCccccCC
Q 017800 150 TGVLLTGYLDNFKAMMHGNNISVEVDYMTP--LNSSNYYESIILTIKGIDI------KMERILTIFMTIDLSSNKFQGGI 221 (365)
Q Consensus 150 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~ 221 (365)
++..+...+..++.|+.++........... ......+..+.+..+.+.. ..+..+++|+.|++++|++++..
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 887766657777777776653322211111 1122345555555554432 34556899999999999999999
Q ss_pred ChhhhcccccccccCcCCCcc-------------EEECccCccccCCCCC-CCCCCCCCCccCCCCCCCCcC
Q 017800 222 PEVVGKLNLLKGLNISHNNLT-------------VLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCGFP 279 (365)
Q Consensus 222 p~~l~~l~~L~~L~Ls~N~L~-------------~L~ls~N~l~g~~p~~-~~~~~~~~~~~~~n~~lc~~~ 279 (365)
|..++.+++|++|+|++|+++ .|++++|++++.+|.. ..+..+....+.|||..|.++
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hhhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999999886 7999999999877753 234556667788888887654
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2.4e-29 Score=229.61 Aligned_cols=211 Identities=20% Similarity=0.227 Sum_probs=182.0
Q ss_pred cCCcccEEEccC-CCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCE
Q 017800 5 GIATLYYLDLSN-NFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67 (365)
Q Consensus 5 ~l~~L~~L~Ls~-N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 67 (365)
++++|++|++++ |.+++.+| ..+++|++|++++| ++|++|++++|.+++.+|..+..+++|++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 688999999995 99998888 67899999999988 78999999999999999999999999999
Q ss_pred EEccCCcCccCCCccCcCCC-CCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCC
Q 017800 68 LNLNGNRLEGPLPPSLVNCH-HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH 146 (365)
Q Consensus 68 L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~ 146 (365)
|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++|.+++..|..+ ..+++|+.|++++
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF--GSDKNTQKIHLAK 230 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGC--CTTSCCSEEECCS
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHH--hcCCCCCEEECCC
Confidence 99999999999999999998 999999999999998999999987 9999999999998888777 8999999999999
Q ss_pred CcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhh
Q 017800 147 NEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG 226 (365)
Q Consensus 147 N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 226 (365)
|.+++.+|. +..++.|+.+++.... ..+..+..+..+++|+.|+|++|+++|.+|.. +
T Consensus 231 N~l~~~~~~--~~~l~~L~~L~Ls~N~-------------------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~ 288 (313)
T 1ogq_A 231 NSLAFDLGK--VGLSKNLNGLDLRNNR-------------------IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G 288 (313)
T ss_dssp SEECCBGGG--CCCCTTCCEEECCSSC-------------------CEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T
T ss_pred CceeeecCc--ccccCCCCEEECcCCc-------------------ccCcCChHHhcCcCCCEEECcCCcccccCCCC-c
Confidence 999987664 5555666555441110 11112233455789999999999999999987 8
Q ss_pred cccccccccCcCCC
Q 017800 227 KLNLLKGLNISHNN 240 (365)
Q Consensus 227 ~l~~L~~L~Ls~N~ 240 (365)
.+++|+.|++++|.
T Consensus 289 ~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 289 NLQRFDVSAYANNK 302 (313)
T ss_dssp TGGGSCGGGTCSSS
T ss_pred cccccChHHhcCCC
Confidence 89999999988876
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2.7e-28 Score=233.85 Aligned_cols=254 Identities=19% Similarity=0.217 Sum_probs=190.6
Q ss_pred cCCcccEEEccCCCCCCcCC----CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcC--ccCCCCc
Q 017800 5 GIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRK--FVKSCNL 65 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~----~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~--~~~l~~L 65 (365)
++++|++|++++|.+.+.++ ..+++|++|++++| ++|++|++++|.+++.+|.. |..+++|
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 131 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence 67889999999998875543 56788999999988 68999999999998765554 8889999
Q ss_pred CEEEccCCcCccCCCcc-CcCCCCCCEEEccCCcCCCCCChhhcCC----------------------------------
Q 017800 66 TSLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPNWLEIL---------------------------------- 110 (365)
Q Consensus 66 ~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l---------------------------------- 110 (365)
++|++++|++++..|.. +.++++|++|++++|++++..|..+..+
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence 99999999999777766 7889999999999999988777665543
Q ss_pred CCCcEEEeeccccccccCCCC-----------------------------------Cc--cCCCCccEEEcCCCcccCcc
Q 017800 111 PELQVLILRSNRFWGPIGENT-----------------------------------TI--VPFPSLRIIDLSHNEFTGVL 153 (365)
Q Consensus 111 ~~L~~L~L~~N~l~~~~~~~~-----------------------------------~~--~~l~~L~~L~ls~N~l~~~~ 153 (365)
++|++|++++|.+++..|..+ .+ ...++|+.|++++|.+++..
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 578888888887754332111 00 01257888888888888776
Q ss_pred chhhhhhhhhhcccCCCcccccccCC--CCCCCccceEEEEEeccc---cchhhhhhheeeEEcCCCccccCCChhhhcc
Q 017800 154 LTGYLDNFKAMMHGNNISVEVDYMTP--LNSSNYYESIILTIKGID---IKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228 (365)
Q Consensus 154 ~~~~~~~l~~L~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 228 (365)
|.. +..++.|+.+++.......... ......+..+.+..+.+. ...+..+++|++|+|++|++++..|..++.+
T Consensus 292 ~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 292 KSV-FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp TTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred hhh-cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence 654 6777777776653332222211 112234555555555443 3445568999999999999999999999999
Q ss_pred cccccccCcCCCcc--------------EEECccCccccCCCCCC
Q 017800 229 NLLKGLNISHNNLT--------------VLNLSYNQFEGPIPRGS 259 (365)
Q Consensus 229 ~~L~~L~Ls~N~L~--------------~L~ls~N~l~g~~p~~~ 259 (365)
++|++|+|++|+|+ .|++++|++++.+|...
T Consensus 371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred ccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 99999999999887 89999999999998643
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=5e-28 Score=243.44 Aligned_cols=261 Identities=20% Similarity=0.186 Sum_probs=207.4
Q ss_pred cCCcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-----------------CCCCEEEccCCcCcccCCcCccCCCC
Q 017800 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKFVKSCN 64 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-----------------~~L~~L~Ls~N~l~~~~p~~~~~l~~ 64 (365)
.+++|++|++++|.++++.+ ..+++|++|++++| ++|+.|++++|++++..|.+|..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 57899999999999999877 66789999999987 37999999999999999999999999
Q ss_pred cCEEEccCCcCccCCC-ccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccc--cccCCCCCccCCCCccE
Q 017800 65 LTSLNLNGNRLEGPLP-PSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW--GPIGENTTIVPFPSLRI 141 (365)
Q Consensus 65 L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~~~~~~~~~~l~~L~~ 141 (365)
|+.|++++|++++.+| ..+.++++|++|++++|++++..+..+..+++|+.|++++|.+. +.+|..+ ..+++|+.
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~ 484 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTI 484 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCE
Confidence 9999999999987666 68899999999999999999988889999999999999999986 4567666 89999999
Q ss_pred EEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCC
Q 017800 142 IDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGI 221 (365)
Q Consensus 142 L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 221 (365)
|++++|.+++..+. .+..++.|+.+++.......+..... .+.....+..+++|+.|+|++|+++...
T Consensus 485 L~Ls~N~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-----------~~~~~~~~~~l~~L~~L~L~~N~l~~i~ 552 (680)
T 1ziw_A 485 LDLSNNNIANINDD-MLEGLEKLEILDLQHNNLARLWKHAN-----------PGGPIYFLKGLSHLHILNLESNGFDEIP 552 (680)
T ss_dssp EECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCGGGGSTTS-----------TTSCCCTTTTCTTCCEEECCSSCCCCCC
T ss_pred EECCCCCCCcCChh-hhccccccCEEeCCCCCccccchhhc-----------cCCcchhhcCCCCCCEEECCCCCCCCCC
Confidence 99999999976654 47778877776653222111100000 0001112345788999999999998555
Q ss_pred ChhhhcccccccccCcCCCcc--------------EEECccCccccCCCCCC--CCCCCCCCccCCCCCCCCcC
Q 017800 222 PEVVGKLNLLKGLNISHNNLT--------------VLNLSYNQFEGPIPRGS--QFNTFPNDSYVGNSGLCGFP 279 (365)
Q Consensus 222 p~~l~~l~~L~~L~Ls~N~L~--------------~L~ls~N~l~g~~p~~~--~~~~~~~~~~~~n~~lc~~~ 279 (365)
+..|+.+++|+.|+|++|+|+ .|++++|++++..|... .+..+....+.|||+.|+++
T Consensus 553 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred HHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 557889999999999999776 89999999997666422 34566667788999888765
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=2e-28 Score=236.35 Aligned_cols=270 Identities=21% Similarity=0.164 Sum_probs=215.0
Q ss_pred cCCcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEE
Q 017800 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 68 (365)
++++|++|+|++|.++++.| ..+++|++|++++| ++|++|+|++|.+++..|..|..+++|++|
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 68999999999999999877 67889999999998 689999999999999999999999999999
Q ss_pred EccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCc
Q 017800 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (365)
Q Consensus 69 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~ 148 (365)
++++|.+++..|..|.++++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF--KRLYRLKVLEISHWP 211 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS--CSCTTCCEEEEECCT
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc--ccCcccceeeCCCCc
Confidence 999999998889999999999999999999999777789999999999999999988766666 889999999999988
Q ss_pred ccCccchhhhhhhhhhcccCCCcccccccCCCC-----CCCccceEEEEEecc---ccchhhhhhheeeEEcCCCccccC
Q 017800 149 FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN-----SSNYYESIILTIKGI---DIKMERILTIFMTIDLSSNKFQGG 220 (365)
Q Consensus 149 l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~l~~L~~L~Ls~N~l~~~ 220 (365)
+.+.+|...+. ...|+.+++... .+...+ ....+..+.+..+.+ ....+..+++|+.|+|++|++++.
T Consensus 212 ~~~~~~~~~~~-~~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (477)
T 2id5_A 212 YLDTMTPNCLY-GLNLTSLSITHC---NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV 287 (477)
T ss_dssp TCCEECTTTTT-TCCCSEEEEESS---CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred cccccCccccc-CccccEEECcCC---cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE
Confidence 87777765333 224444433111 222222 123345555554443 334455688999999999999999
Q ss_pred CChhhhcccccccccCcCCCcc--------------EEECccCccccCCCCCCCCCCCCCCccCCCCCCCCcCC
Q 017800 221 IPEVVGKLNLLKGLNISHNNLT--------------VLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPL 280 (365)
Q Consensus 221 ~p~~l~~l~~L~~L~Ls~N~L~--------------~L~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~lc~~~~ 280 (365)
.|..|..+++|+.|+|++|+|+ .|++++|++++..+..+.+.......+.++...|..|.
T Consensus 288 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred CHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 9999999999999999999876 89999999987654332223333455677777886654
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=2.4e-27 Score=232.61 Aligned_cols=125 Identities=23% Similarity=0.201 Sum_probs=99.4
Q ss_pred CcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEc
Q 017800 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (365)
++|++|++++|+++++.| ..+++|++|++++| ++|++|+|++|.+++..|..|+.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 578888888888888766 66788888888888 67888888888888777777888888888888
Q ss_pred cCCcCcc-CCCccCcCCCCCCEEEccCCcCCCCCC-hhhcCCCCCcEEEeeccccccccCCCC
Q 017800 71 NGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGENT 131 (365)
Q Consensus 71 ~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~ 131 (365)
++|++++ ..|..+.++++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 8888885 356678888888888888888433344 577888888888888888877776655
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=232.18 Aligned_cols=142 Identities=14% Similarity=0.211 Sum_probs=90.2
Q ss_pred cCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCC----CCCCCccceEEEEEecccc----chhhhhh
Q 017800 134 VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTP----LNSSNYYESIILTIKGIDI----KMERILT 205 (365)
Q Consensus 134 ~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~l~ 205 (365)
..+++|++|++++|.+++..|.. +..++.|+.+++.......+.. ......+..++++.+.+.. ..+..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 56788999999999998877755 6777777766553222211111 1122334445555444433 2233467
Q ss_pred heeeEEcCCCccccCCChhhhcccccccccCcCCCcc-------------EEECccCccccCCCCC--CCCCCCCCCccC
Q 017800 206 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT-------------VLNLSYNQFEGPIPRG--SQFNTFPNDSYV 270 (365)
Q Consensus 206 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~-------------~L~ls~N~l~g~~p~~--~~~~~~~~~~~~ 270 (365)
+|++|++++|++++.+|..+. ++|+.|+|++|+|+ .|++++|++++ +|.. ..+..+....+.
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECc
Confidence 788888888888777666554 67888888888765 78888888884 5543 234455566677
Q ss_pred CCCCCCCcC
Q 017800 271 GNSGLCGFP 279 (365)
Q Consensus 271 ~n~~lc~~~ 279 (365)
+|+..|.++
T Consensus 477 ~N~~~c~c~ 485 (520)
T 2z7x_B 477 TNPWDCSCP 485 (520)
T ss_dssp SSCBCCCHH
T ss_pred CCCCcccCC
Confidence 888877654
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.4e-27 Score=234.93 Aligned_cols=270 Identities=20% Similarity=0.203 Sum_probs=150.2
Q ss_pred cCCcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEE
Q 017800 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 68 (365)
.+++++.+++++|.++.+++ ..+++|++|++++| ++|++|+|++|.+++..|..|+.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 34556666666666665554 34556666666665 456666666666666555566666666666
Q ss_pred EccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCC-----------------
Q 017800 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT----------------- 131 (365)
Q Consensus 69 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~----------------- 131 (365)
+|++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence 666666664444445666666666666666666555566666666666666666543211100
Q ss_pred ------------------CccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccC--CCCCCCccceEEE
Q 017800 132 ------------------TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMT--PLNSSNYYESIIL 191 (365)
Q Consensus 132 ------------------~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~--~~~~~~~~~~~~~ 191 (365)
.....++|+.|++++|.+++. ..+..++.|..+++......... .......+..+.+
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 285 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285 (597)
T ss_dssp CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEEC
Confidence 000113455555555555543 22555666665554222111110 0011122333333
Q ss_pred EEecccc--chhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc-----------EEECccCccccCCCCC
Q 017800 192 TIKGIDI--KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT-----------VLNLSYNQFEGPIPRG 258 (365)
Q Consensus 192 ~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~-----------~L~ls~N~l~g~~p~~ 258 (365)
..+.+.. .....+++|+.|+|++|.++ .+|..++.+++|+.|+|++|+|+ .|++++|++++..+.
T Consensus 286 s~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~~~~- 363 (597)
T 3oja_B 286 SNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLR- 363 (597)
T ss_dssp TTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHHH-
T ss_pred CCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCChhHH-
Confidence 3332221 11123667888888888887 67777778888888888888765 677788877764322
Q ss_pred CCCCCCCCCccCCCCCCCCcC
Q 017800 259 SQFNTFPNDSYVGNSGLCGFP 279 (365)
Q Consensus 259 ~~~~~~~~~~~~~n~~lc~~~ 279 (365)
..+..+....+.+++..|+.+
T Consensus 364 ~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 364 ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp HHTTTCCTTTBCCCCCCCCTT
T ss_pred HHHHHHhhhccccccccCCcc
Confidence 124445555566777777653
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=9.2e-27 Score=209.58 Aligned_cols=211 Identities=17% Similarity=0.134 Sum_probs=147.3
Q ss_pred cEEEccCCCCCCcCCCCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCc-C
Q 017800 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR-L 75 (365)
Q Consensus 10 ~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l 75 (365)
+.++.+++.++.++....++|++|++++| ++|++|++++|.+++..|..|..+++|++|++++|. +
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 45677777776655455567777777766 578888999998888778888889999999999987 7
Q ss_pred ccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccch
Q 017800 76 EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT 155 (365)
Q Consensus 76 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~ 155 (365)
+...|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCEECTT
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh--ccCCCccEEECCCCcccccCHH
Confidence 76667888888999999999999988778888888999999999998876555545 7888999999999988865443
Q ss_pred hhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhccccccccc
Q 017800 156 GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 235 (365)
Q Consensus 156 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 235 (365)
.+..++.|+.+++.... ..+..+..+..+++|+.|++++|++++..+..+..+++|+.|+
T Consensus 172 -~~~~l~~L~~L~l~~n~-------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 172 -AFRGLHSLDRLLLHQNR-------------------VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp -TTTTCTTCCEEECCSSC-------------------CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred -HhcCccccCEEECCCCc-------------------ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence 25555444443331100 0011112222355666666766666655555566666666666
Q ss_pred CcCCCcc
Q 017800 236 ISHNNLT 242 (365)
Q Consensus 236 Ls~N~L~ 242 (365)
+++|.++
T Consensus 232 l~~N~~~ 238 (285)
T 1ozn_A 232 LNDNPWV 238 (285)
T ss_dssp CCSSCEE
T ss_pred ccCCCcc
Confidence 6665554
No 16
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.9e-27 Score=212.04 Aligned_cols=182 Identities=19% Similarity=0.123 Sum_probs=147.4
Q ss_pred CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCc-CCCCCChhhcCCCCCcEEE
Q 017800 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEILPELQVLI 117 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~ 117 (365)
++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|. ++...|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 689999999999998888899999999999999999998889999999999999999997 8887788999999999999
Q ss_pred eeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccc
Q 017800 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID 197 (365)
Q Consensus 118 L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (365)
+++|.+++..+..+ ..+++|++|++++|.+++..+.. +..++.|+.+++.... ...+.
T Consensus 112 l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-------------------l~~~~ 169 (285)
T 1ozn_A 112 LDRCGLQELGPGLF--RGLAALQYLYLQDNALQALPDDT-FRDLGNLTHLFLHGNR-------------------ISSVP 169 (285)
T ss_dssp CTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC-------------------CCEEC
T ss_pred CCCCcCCEECHhHh--hCCcCCCEEECCCCcccccCHhH-hccCCCccEEECCCCc-------------------ccccC
Confidence 99999988777766 88999999999999999765543 6666666655441111 11122
Q ss_pred cchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 198 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
...+..+++|+.|++++|.+++..|..++.+++|+.|++++|+++
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 223344677888888888888777888888888887777766655
No 17
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=4e-27 Score=231.79 Aligned_cols=92 Identities=20% Similarity=0.245 Sum_probs=55.1
Q ss_pred CcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEc
Q 017800 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (365)
++|++|++++|.++++.+ ..+++|++|++++| ++|++|+|++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 456666666666666554 45566666666666 45666666666665 44444 5666666666
Q ss_pred cCCcCcc-CCCccCcCCCCCCEEEccCCcCCC
Q 017800 71 NGNRLEG-PLPPSLVNCHHLEVLNVGNNQIND 101 (365)
Q Consensus 71 ~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~ 101 (365)
++|++++ .+|..|+++++|++|++++|++++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 6666664 234556666666666666666543
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=8.5e-28 Score=239.76 Aligned_cols=148 Identities=23% Similarity=0.207 Sum_probs=119.6
Q ss_pred cCCcccEEEccCCCCCCcCC---CCCCCCcEEECCCC---------------------CCCCEEEccCCcCcccCCc--C
Q 017800 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN---------------------LTHKVLDMRMNNFNGKIPR--K 58 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N---------------------~~L~~L~Ls~N~l~~~~p~--~ 58 (365)
++++|++|++++|.+.+.+| ..+++|++|++++| ++|++|++++|+++ .+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 68999999999999999888 67889999999988 47999999999999 8888 8
Q ss_pred ccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCC-CcEEEeeccccccccCCCCCccCCC
Q 017800 59 FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPE-LQVLILRSNRFWGPIGENTTIVPFP 137 (365)
Q Consensus 59 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l~ 137 (365)
++.+++|++|++++|+++|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+....++
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 402 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence 9999999999999999998888 8888888888888888887 47777877877 888888888876 566655222234
Q ss_pred CccEEEcCCCcccCccchh
Q 017800 138 SLRIIDLSHNEFTGVLLTG 156 (365)
Q Consensus 138 ~L~~L~ls~N~l~~~~~~~ 156 (365)
+|+.|++++|.+++.+|..
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp CEEEEECCSSCTTTTTTCS
T ss_pred ccCEEECcCCcCCCcchhh
Confidence 6777777777776665544
No 19
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.1e-26 Score=211.26 Aligned_cols=145 Identities=21% Similarity=0.279 Sum_probs=91.8
Q ss_pred CcccEEEccCCCCCCcCC---CCCCCCcEEECCCC---------------CCCCEEEccCCcCcccCCcCccCCCCcCEE
Q 017800 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN---------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N---------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 68 (365)
++|++|++++|+++.+.+ ..+++|++|++++| ++|++|++++|.++ .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 467778888877776554 35566666666666 45666666666665 355556666666666
Q ss_pred EccCCcCccCCC-ccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeecccccc-ccCCCCCccCCCCccEEEcCC
Q 017800 69 NLNGNRLEGPLP-PSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG-PIGENTTIVPFPSLRIIDLSH 146 (365)
Q Consensus 69 ~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~ls~ 146 (365)
++++|++++..+ ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+ ..|..+ ..+++|+.|++++
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQ 184 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTT
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH--hhCcCCCEEECCC
Confidence 666666664433 456666666666666666666566666666666666666666654 345544 5666666666666
Q ss_pred CcccCccc
Q 017800 147 NEFTGVLL 154 (365)
Q Consensus 147 N~l~~~~~ 154 (365)
|.+++..|
T Consensus 185 n~l~~~~~ 192 (306)
T 2z66_A 185 CQLEQLSP 192 (306)
T ss_dssp SCCCEECT
T ss_pred CCcCCcCH
Confidence 66665444
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=5.6e-27 Score=220.39 Aligned_cols=142 Identities=23% Similarity=0.172 Sum_probs=112.0
Q ss_pred cCCcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEE
Q 017800 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 68 (365)
.++++++|++++|.++.+++ ..+++|++|++++| ++|++|++++|.+++..|..|+.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 56888999999999888776 55788888888887 678888888888887777888888888888
Q ss_pred EccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCc
Q 017800 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (365)
Q Consensus 69 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~ 148 (365)
++++|+++...+..|.++++|++|++++|.+++..|..+..+++|++|++++|++++. + . ..+++|+.|++++|.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~--~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--L--SLIPSLFHANVSYNL 197 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--G--GGCTTCSEEECCSSC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--c--ccccccceeeccccc
Confidence 8888888854444568888888888888888887777788888888888888888653 1 1 456667777776666
Q ss_pred ccC
Q 017800 149 FTG 151 (365)
Q Consensus 149 l~~ 151 (365)
+++
T Consensus 198 l~~ 200 (390)
T 3o6n_A 198 LST 200 (390)
T ss_dssp CSE
T ss_pred ccc
Confidence 654
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=9.5e-27 Score=231.05 Aligned_cols=250 Identities=20% Similarity=0.230 Sum_probs=204.5
Q ss_pred cCCcccEEEccCCCCCCcCC--CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCc-CccCCCCcCEE
Q 017800 5 GIATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPR-KFVKSCNLTSL 68 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~--~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L 68 (365)
++++|++|++++|+++.+++ ..+++|++|++++| ++|++|++++|.+.+.+|. .+..+++|++|
T Consensus 276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 67899999999999997655 67889999999998 7899999999999877765 48999999999
Q ss_pred EccCCcCccCC--CccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCC
Q 017800 69 NLNGNRLEGPL--PPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH 146 (365)
Q Consensus 69 ~L~~N~l~~~~--p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~ 146 (365)
++++|.+++.. |..+.++++|++|++++|++++..|..+..+++|++|++++|++.+..+... +..+++|+.|++++
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP-FQNLHLLKVLNLSH 434 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT-TTTCTTCCEEECTT
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh-hhCcccCCEEECCC
Confidence 99999998765 7789999999999999999999888899999999999999999987766541 37899999999999
Q ss_pred CcccCccchhhhhhhhhhcccCCCcccccc--c---CCCCCCCccceEEEEEeccc---cchhhhhhheeeEEcCCCccc
Q 017800 147 NEFTGVLLTGYLDNFKAMMHGNNISVEVDY--M---TPLNSSNYYESIILTIKGID---IKMERILTIFMTIDLSSNKFQ 218 (365)
Q Consensus 147 N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~Ls~N~l~ 218 (365)
|.+++..|.. +..+++|+.++........ + ........+..+.+..+.+. +..+..+++|+.|+|++|+++
T Consensus 435 n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 435 SLLDISSEQL-FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp CCCBTTCTTT-TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CccCCcCHHH-HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccC
Confidence 9999877754 7778888777663332211 0 11112234555555544443 344566899999999999999
Q ss_pred cCCChhhhcccccccccCcCCCcc--------------EEECccCccccCCCC
Q 017800 219 GGIPEVVGKLNLLKGLNISHNNLT--------------VLNLSYNQFEGPIPR 257 (365)
Q Consensus 219 ~~~p~~l~~l~~L~~L~Ls~N~L~--------------~L~ls~N~l~g~~p~ 257 (365)
+.+|+.++.++.| .|+|++|+++ .+++++|++++..+.
T Consensus 514 ~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 514 SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9999999999999 9999999886 899999999987663
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.5e-26 Score=217.53 Aligned_cols=241 Identities=20% Similarity=0.207 Sum_probs=158.7
Q ss_pred cCCcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEE
Q 017800 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 68 (365)
++++|++|++++|.++++.+ ..+++|++|++++| ++|++|++++|.++...+..|..+++|++|
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence 57899999999999998876 67889999999998 679999999999995555567999999999
Q ss_pred EccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccc------------------cCCC
Q 017800 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP------------------IGEN 130 (365)
Q Consensus 69 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~------------------~~~~ 130 (365)
++++|++++..|..+.++++|++|++++|++++.. +..+++|+.|++++|.+++. +|.
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~- 222 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG- 222 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC-
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeeccc-
Confidence 99999999888888999999999999999998743 34445555555554444321 121
Q ss_pred CCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeE
Q 017800 131 TTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTI 210 (365)
Q Consensus 131 ~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 210 (365)
...++|+.|++++|.+++. ..+..++.|+.+++...... +..+..+..+++|+.|
T Consensus 223 ---~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~-------------------~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 223 ---PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELE-------------------KIMYHPFVKMQRLERL 277 (390)
T ss_dssp ---CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCC-------------------EEESGGGTTCSSCCEE
T ss_pred ---cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCC-------------------CcChhHccccccCCEE
Confidence 2246788888888888765 23667777766655221111 1111222224455555
Q ss_pred EcCCCccccCCChhhhcccccccccCcCCCcc-------------EEECccCccccCCCCCCCCCCCCCCccCCCCCCCC
Q 017800 211 DLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT-------------VLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCG 277 (365)
Q Consensus 211 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~-------------~L~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~lc~ 277 (365)
+|++|++++ +|..++.+++|++|+|++|+++ .|++++|++++. | ...+..+....+.+|+.-|.
T Consensus 278 ~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 278 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp ECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHH
T ss_pred ECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCccch
Confidence 555555552 3334444555555555555443 555555555532 2 12334445555566665553
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=6e-26 Score=208.55 Aligned_cols=221 Identities=19% Similarity=0.191 Sum_probs=152.6
Q ss_pred cccEEEccCCCCCCcCCCCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCc
Q 017800 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (365)
Q Consensus 8 ~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 74 (365)
+++.++++++.++.++....++++.|++++| ++|++|++++|.+++..|..|+.+++|++|++++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 6888889888888765545567777777776 567788888888877667777788888888888888
Q ss_pred CccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeecccccc--ccCCCCCccCCCCccEEEcCCCcccCc
Q 017800 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG--PIGENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 75 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+.. ..+..+ ..+++|+.|++++|.++..
T Consensus 112 l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 112 LK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF--QGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp CS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG--GGCTTCCEEECCSSCCCSC
T ss_pred CC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc--cCCCCcCEEECCCCccccC
Confidence 77 4555543 678888888888877666677777888888888877753 344433 6777888888888777753
Q ss_pred cchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccc
Q 017800 153 LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 232 (365)
Q Consensus 153 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 232 (365)
|.... +.|+.++.... ...+.....+..+++|+.|+|++|.+++..+..++.+++|+
T Consensus 187 -~~~~~---~~L~~L~l~~n-------------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 243 (330)
T 1xku_A 187 -PQGLP---PSLTELHLDGN-------------------KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243 (330)
T ss_dssp -CSSCC---TTCSEEECTTS-------------------CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred -Ccccc---ccCCEEECCCC-------------------cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCC
Confidence 33322 22322222000 01112223344567888888888888877777888888888
Q ss_pred cccCcCCCcc-------------EEECccCccccCCC
Q 017800 233 GLNISHNNLT-------------VLNLSYNQFEGPIP 256 (365)
Q Consensus 233 ~L~Ls~N~L~-------------~L~ls~N~l~g~~p 256 (365)
+|+|++|+++ .|++++|++++..+
T Consensus 244 ~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 244 ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp EEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred EEECCCCcCccCChhhccCCCcCEEECCCCcCCccCh
Confidence 8888888765 78888888885443
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=4.4e-27 Score=234.64 Aligned_cols=263 Identities=18% Similarity=0.231 Sum_probs=201.8
Q ss_pred cCCcccEEEccCCC-CCC-cCC---CCC------CCCcEEECCCC--------------CCCCEEEccCCcCcccCCcCc
Q 017800 5 GIATLYYLDLSNNF-LTN-IEY---FPP------TNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKF 59 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~-l~~-~~~---~~~------~~L~~L~ls~N--------------~~L~~L~Ls~N~l~~~~p~~~ 59 (365)
++++|++|++++|+ +++ .+| ..+ ++|++|++++| ++|++|++++|.++|.+| .|
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence 68899999999998 998 666 333 89999999988 579999999999999999 99
Q ss_pred cCCCCcCEEEccCCcCccCCCccCcCCCC-CCEEEccCCcCCCCCChhhcCCC--CCcEEEeeccccccccCCCCCcc--
Q 017800 60 VKSCNLTSLNLNGNRLEGPLPPSLVNCHH-LEVLNVGNNQINDNFPNWLEILP--ELQVLILRSNRFWGPIGENTTIV-- 134 (365)
Q Consensus 60 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~~~~~~~~-- 134 (365)
+.+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|++++|.+++.+|..+ .
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~~ 425 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF--DPL 425 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS--CTT
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhh--ccc
Confidence 99999999999999999 88999999999 999999999999 5888887655 99999999999999888766 5
Q ss_pred -----CCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCC-CC--------ccceEEEEEeccc---
Q 017800 135 -----PFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNS-SN--------YYESIILTIKGID--- 197 (365)
Q Consensus 135 -----~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~--- 197 (365)
.+++|+.|++++|.++ .+|...+..++.|+.+++.......+..... .. .+..+.+..+.+.
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 504 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC
T ss_pred ccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC
Confidence 7789999999999999 4566657777888777663332221111110 01 4555665555443
Q ss_pred cchh-hhhhheeeEEcCCCccccCCChhhhcccccccccCcCCC------c--------------cEEECccCccccCCC
Q 017800 198 IKME-RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN------L--------------TVLNLSYNQFEGPIP 256 (365)
Q Consensus 198 ~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~------L--------------~~L~ls~N~l~g~~p 256 (365)
..+. ..+++|+.|+|++|++++ +|..++.+++|+.|+|++|+ + +.|++++|++ +.+|
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred hhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence 2222 256788999999999986 88888889999999886543 2 2677777777 5666
Q ss_pred CCCCCCCCCCCccCCCCCCC
Q 017800 257 RGSQFNTFPNDSYVGNSGLC 276 (365)
Q Consensus 257 ~~~~~~~~~~~~~~~n~~lc 276 (365)
.... ..+....+.+|+..|
T Consensus 583 ~~~~-~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 583 EKIT-PNISVLDIKDNPNIS 601 (636)
T ss_dssp SCCC-TTCCEEECCSCTTCE
T ss_pred HhHh-CcCCEEECcCCCCcc
Confidence 5422 445555566666555
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=4.4e-26 Score=226.86 Aligned_cols=119 Identities=23% Similarity=0.217 Sum_probs=102.0
Q ss_pred CcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEc
Q 017800 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (365)
+++++|||++|+|+++.+ ..+++|++|+|++| ++|++|+|++|+|++..+..|.++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 368999999999998877 56788999999998 68999999999998777778899999999999
Q ss_pred cCCcCccCCCccCcCCCCCCEEEccCCcCCC-CCChhhcCCCCCcEEEeecccccc
Q 017800 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWG 125 (365)
Q Consensus 71 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~ 125 (365)
++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 9999997777788999999999999999876 357788889999999998887654
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=7.5e-27 Score=231.78 Aligned_cols=249 Identities=20% Similarity=0.099 Sum_probs=125.8
Q ss_pred CCcccEEEccCCCCCCcCC-CCCCCCcEEECCCC----------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCc
Q 017800 6 IATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~ls~N----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 74 (365)
+++|+.|++++|.++.... ..+++|++|++++| ++|+.|++++|...+.+ .+..+++|++|++++|+
T Consensus 284 l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 361 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA 361 (606)
T ss_dssp GTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC
T ss_pred CCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccch--hhccCCCCCEEECcCCc
Confidence 4555555555555544332 34445555555554 34555555555333222 34445555555555555
Q ss_pred CccC--CCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccC-CCCCccCCCCccEEEcCCCcccC
Q 017800 75 LEGP--LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG-ENTTIVPFPSLRIIDLSHNEFTG 151 (365)
Q Consensus 75 l~~~--~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~L~ls~N~l~~ 151 (365)
+++. +|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..+ ..+ ..+++|+.|++++|.+++
T Consensus 362 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF--LSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp EEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT--TTCTTCCEEECTTSCCEE
T ss_pred cCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh--hccccCCEEECcCCCCCc
Confidence 5433 24445555555555555555544 34445555555555555555544433 222 445555555555555554
Q ss_pred ccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEec-cccchhhhhhheeeEEcCCCccccCCChhhhcccc
Q 017800 152 VLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKG-IDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL 230 (365)
Q Consensus 152 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 230 (365)
..|.. +..+++|+.++...... .+ ..+..+..+++|+.|+|++|++++.+|..++.+++
T Consensus 439 ~~~~~-~~~l~~L~~L~l~~n~l-------------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 439 DFDGI-FLGLTSLNTLKMAGNSF-------------------KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp CCTTT-TTTCTTCCEEECTTCEE-------------------GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cchhh-hcCCCCCCEEECCCCcC-------------------CCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 44432 44444443333311000 00 01111222455666666666666666666666666
Q ss_pred cccccCcCCCcc--------------EEECccCccccCCCCC-CCCC-CCCCCccCCCCCCCCcCC
Q 017800 231 LKGLNISHNNLT--------------VLNLSYNQFEGPIPRG-SQFN-TFPNDSYVGNSGLCGFPL 280 (365)
Q Consensus 231 L~~L~Ls~N~L~--------------~L~ls~N~l~g~~p~~-~~~~-~~~~~~~~~n~~lc~~~~ 280 (365)
|++|+|++|+++ .||+++|+++ .+|.. ..+. .+....+.+||..|+++.
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 666666666554 6677777776 34443 1222 255567788888887654
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=7.2e-26 Score=216.25 Aligned_cols=236 Identities=17% Similarity=0.116 Sum_probs=124.0
Q ss_pred cEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCC
Q 017800 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL 89 (365)
Q Consensus 10 ~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 89 (365)
+.++.+++.++.++..-.++++ .|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|
T Consensus 46 ~~v~c~~~~l~~iP~~~~~~l~-----------~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L 114 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGISTNTR-----------LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114 (440)
T ss_dssp CEEECCSCCCSSCCSCCCTTCS-----------EEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSC
T ss_pred CEEEeCCCCcCcCCCCCCCCCc-----------EEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccC
Confidence 4556666666554443334444 44444444444444444555555555555555544444444445555
Q ss_pred CEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCC
Q 017800 90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN 169 (365)
Q Consensus 90 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~ 169 (365)
++|+|++|++++..+..|..+++|++|++++|.+.+..+..+ ..+++|+.|++++|...+.++...+..+++|+.+++
T Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192 (440)
T ss_dssp CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEEC
T ss_pred CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhhcccccCeecC
Confidence 555555555544333344445555555555555443333333 444555555555433333333333444444433333
Q ss_pred CcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc-------
Q 017800 170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT------- 242 (365)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~------- 242 (365)
.... +...+ .+..+++|+.|+|++|++++..|..|..+++|+.|+|++|+|+
T Consensus 193 ~~n~---l~~~~------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 251 (440)
T 3zyj_A 193 AMCN---LREIP------------------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251 (440)
T ss_dssp TTSC---CSSCC------------------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCc---Ccccc------------------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhh
Confidence 1110 00000 0112456777777777777777777777777777777777655
Q ss_pred -------EEECccCccccCCCCC-CCCCCCCCCccCCCCCCCCcC
Q 017800 243 -------VLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCGFP 279 (365)
Q Consensus 243 -------~L~ls~N~l~g~~p~~-~~~~~~~~~~~~~n~~lc~~~ 279 (365)
.||+++|++++..+.. ..+..+....+.+||+.|++.
T Consensus 252 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 7788888888554442 234556666788888888663
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=8.4e-26 Score=207.81 Aligned_cols=239 Identities=17% Similarity=0.135 Sum_probs=161.4
Q ss_pred cccEEEccCCCCCCcCCCCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCc
Q 017800 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (365)
Q Consensus 8 ~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 74 (365)
+++.++++++.++.++....++|+.|++++| ++|++|++++|.+++..|..|+.+++|++|++++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 6888999999888665555677888888777 578888888888887777788888888888888888
Q ss_pred CccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeecccccc--ccCCCCCccCCCCccEEEcCCCcccCc
Q 017800 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG--PIGENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 75 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.++. ..+..+ ..+ +|+.|++++|.+++
T Consensus 114 l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 114 LV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF--DGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp CC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS--CSC-CCSCCBCCSSBCSS-
T ss_pred CC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc--cCC-ccCEEECcCCCCCc-
Confidence 87 5565554 778888888888887666667788888888888888753 444444 555 78888888888776
Q ss_pred cchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccc
Q 017800 153 LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 232 (365)
Q Consensus 153 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 232 (365)
+|.... +.|+.++... +. ...+....+..+++|+.|+|++|++++..+..++.+++|+
T Consensus 187 l~~~~~---~~L~~L~l~~---n~----------------i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 244 (332)
T 2ft3_A 187 IPKDLP---ETLNELHLDH---NK----------------IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244 (332)
T ss_dssp CCSSSC---SSCSCCBCCS---SC----------------CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCC
T ss_pred cCcccc---CCCCEEECCC---Cc----------------CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCC
Confidence 343322 2333332211 11 1112222333467778888888888877777778888888
Q ss_pred cccCcCCCcc-------------EEECccCccccCCCCCCC-------CCCCCCCccCCCCCC
Q 017800 233 GLNISHNNLT-------------VLNLSYNQFEGPIPRGSQ-------FNTFPNDSYVGNSGL 275 (365)
Q Consensus 233 ~L~Ls~N~L~-------------~L~ls~N~l~g~~p~~~~-------~~~~~~~~~~~n~~l 275 (365)
+|+|++|+++ .|++++|++++..+.... +..+....+.+||..
T Consensus 245 ~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 245 ELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp EEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred EEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 8888888765 788888888754433211 222344456666654
No 29
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=9.8e-26 Score=216.08 Aligned_cols=236 Identities=18% Similarity=0.123 Sum_probs=134.3
Q ss_pred cEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCC
Q 017800 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL 89 (365)
Q Consensus 10 ~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 89 (365)
..++.+++.++.++..-.+++ ++|+|++|++++..|..|..+++|++|+|++|++++..|..|.++++|
T Consensus 57 ~~v~c~~~~l~~iP~~~~~~l-----------~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 125 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIPSNT-----------RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125 (452)
T ss_dssp CEEECCSSCCSSCCSCCCTTC-----------SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred cEEEECCCCcCccCCCCCCCc-----------cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccC
Confidence 456666666665443333334 555555555555555555556666666666666655555555556666
Q ss_pred CEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCC
Q 017800 90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN 169 (365)
Q Consensus 90 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~ 169 (365)
++|+|++|++++..+..|..+++|++|++++|++.+..+..+ ..+++|+.|++++|...+.++...+..+++|+.+++
T Consensus 126 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp CEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence 666666666655444455555666666666665554333333 555566666665544333444333444544444433
Q ss_pred CcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc-------
Q 017800 170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT------- 242 (365)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~------- 242 (365)
.... +...+ ....+++|+.|+|++|++++..|..|..+++|+.|+|++|+++
T Consensus 204 ~~n~---l~~~~------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 262 (452)
T 3zyi_A 204 GMCN---IKDMP------------------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262 (452)
T ss_dssp TTSC---CSSCC------------------CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT
T ss_pred CCCc---ccccc------------------cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh
Confidence 1111 11000 0112566777777777777777777777777777777777665
Q ss_pred -------EEECccCccccCCCCC-CCCCCCCCCccCCCCCCCCcC
Q 017800 243 -------VLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCGFP 279 (365)
Q Consensus 243 -------~L~ls~N~l~g~~p~~-~~~~~~~~~~~~~n~~lc~~~ 279 (365)
.|++++|++++..+.. ..+..+....+.+||+.|.+.
T Consensus 263 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 7788888887554432 234455666778888887664
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.7e-26 Score=209.88 Aligned_cols=223 Identities=20% Similarity=0.215 Sum_probs=132.0
Q ss_pred cEEEccCCCCCCcCCCCCCCCcEEECCCC-------------CCCCEEEccCCcCcc--cCCcCccCCCCcCEEEccCCc
Q 017800 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNG--KIPRKFVKSCNLTSLNLNGNR 74 (365)
Q Consensus 10 ~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~ 74 (365)
+.++.+++.++.++....++|++|++++| ++|++|++++|.++. ..|..+..+++|++|++++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 57899999998876655566766666555 455555555555542 223444455555555555555
Q ss_pred CccCCCccCcCCCCCCEEEccCCcCCCCCC-hhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccC-c
Q 017800 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG-V 152 (365)
Q Consensus 75 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~-~ 152 (365)
++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++ .
T Consensus 90 i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp EE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTTCEEGGGE
T ss_pred cc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCCCcccccc
Confidence 55 344445555555555555555555332 345555555555555555554444443 455555555555555554 2
Q ss_pred cchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccc
Q 017800 153 LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 232 (365)
Q Consensus 153 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 232 (365)
.|.. +.. +++|++|++++|++++..|..++.+++|+
T Consensus 167 ~~~~-~~~-------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 167 LPDI-FTE-------------------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp ECSC-CTT-------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred chhH-Hhh-------------------------------------------CcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence 2221 222 45667777777777766677777777777
Q ss_pred cccCcCCCcc--------------EEECccCccccCCCCCC-CC-CCCCCCccCCCCCCCCcC
Q 017800 233 GLNISHNNLT--------------VLNLSYNQFEGPIPRGS-QF-NTFPNDSYVGNSGLCGFP 279 (365)
Q Consensus 233 ~L~Ls~N~L~--------------~L~ls~N~l~g~~p~~~-~~-~~~~~~~~~~n~~lc~~~ 279 (365)
+|+|++|+++ .||+++|++++..|... .+ ..+....+.+|+.-|.++
T Consensus 203 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp EEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred EEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 7777777654 77888888887777542 22 245556677777766543
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=9e-26 Score=230.23 Aligned_cols=145 Identities=19% Similarity=0.182 Sum_probs=125.6
Q ss_pred cCCcccEEEccCCCCCCcCC---CCCCCCcEEECCCCC----------------------CCCEEEccCCcCcccCCc--
Q 017800 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSNL----------------------THKVLDMRMNNFNGKIPR-- 57 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N~----------------------~L~~L~Ls~N~l~~~~p~-- 57 (365)
++++|++|+|++|++.+.+| ..+++|+.|++++|. +|++|+|++|.++ .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 68999999999999999988 678999999999995 8999999999999 8888
Q ss_pred CccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCC-CcEEEeeccccccccCCCCCccCC
Q 017800 58 KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPE-LQVLILRSNRFWGPIGENTTIVPF 136 (365)
Q Consensus 58 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l 136 (365)
.|+.+++|+.|+|++|+++ .+| .+..+++|++|++++|+++ .+|..+..+++ |+.|++++|.++ .+|..+.....
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~ 643 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence 8999999999999999999 888 8999999999999999999 68888999998 999999999987 67766522223
Q ss_pred CCccEEEcCCCcccCccc
Q 017800 137 PSLRIIDLSHNEFTGVLL 154 (365)
Q Consensus 137 ~~L~~L~ls~N~l~~~~~ 154 (365)
++|+.|++++|.+++.+|
T Consensus 644 ~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp SCEEEEECCSSCTTTTSS
T ss_pred CCCCEEECcCCcCCCccc
Confidence 347778888877776554
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.7e-26 Score=210.75 Aligned_cols=132 Identities=17% Similarity=0.263 Sum_probs=89.5
Q ss_pred cCCcccEEEccCCCCCCcCC--CCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCcc
Q 017800 5 GIATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPS 82 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~--~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 82 (365)
..++++.|++++|.++.+++ ..+++| ++|+|++|.++ .+|..++.+++|++|+|++|+++ .+|..
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L-----------~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~ 145 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHL-----------QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS 145 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTC-----------SEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGG
T ss_pred cccceeEEEccCCCchhcChhhhhCCCC-----------CEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHH
Confidence 45789999999999996544 233344 66666667666 66666677777777777777776 56666
Q ss_pred CcCCCCCCEEEccCCcCCCCCChhhcC---------CCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCc
Q 017800 83 LVNCHHLEVLNVGNNQINDNFPNWLEI---------LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 83 l~~l~~L~~L~L~~N~l~~~~p~~l~~---------l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
+.++++|++|++++|++.+.+|..+.. +++|++|++++|.++ .+|..+ ..+++|++|++++|.+++.
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l--~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI--ANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG--GGCTTCCEEEEESSCCCCC
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh--cCCCCCCEEEccCCCCCcC
Confidence 777777777777776666666665543 667777777777665 555544 6667777777777776653
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.8e-26 Score=211.90 Aligned_cols=248 Identities=16% Similarity=0.136 Sum_probs=166.1
Q ss_pred CCcccEEEccCCCCCCcCCCCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccC
Q 017800 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 72 (365)
++.....|+++|.++.++..-.++|++|++++| ++|++|++++|.+++..|..|..+++|++|++++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 344556788888887765555567777777776 5678888888888877777788888888888888
Q ss_pred CcCccCCCccCcCCCCCCEEEccCCcCCCCCC-hhhcCCCCCcEEEeeccc-cccccCCCCCccCCCCccEEEcCCCccc
Q 017800 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNR-FWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (365)
Q Consensus 73 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~ls~N~l~ 150 (365)
|++++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++|. +.+..+..+ ..+++|+.|++++|.++
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF--AGLTFLEELEIDASDLQ 187 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT--TTCCEEEEEEEEETTCC
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc--cCCCCCCEEECCCCCcC
Confidence 88885444447778888888888888876333 367778888888888874 544445555 77788888888888887
Q ss_pred CccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEecc---ccchhhhhhheeeEEcCCCccccCCChhhh-
Q 017800 151 GVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGI---DIKMERILTIFMTIDLSSNKFQGGIPEVVG- 226 (365)
Q Consensus 151 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~- 226 (365)
+..|.. +..++.|+.++. ..+.+ .......+++|+.|++++|.+++..+..+.
T Consensus 188 ~~~~~~-l~~l~~L~~L~l----------------------~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 244 (353)
T 2z80_A 188 SYEPKS-LKSIQNVSHLIL----------------------HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244 (353)
T ss_dssp EECTTT-TTTCSEEEEEEE----------------------ECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred ccCHHH-HhccccCCeecC----------------------CCCccccchhhhhhhcccccEEECCCCcccccccccccc
Confidence 766654 555555544433 22222 222334467888888888888875544433
Q ss_pred --cccccccccCcCCCc------------------cEEECccCccccCCCCC--CCCCCCCCCccCCCCCCCCcC
Q 017800 227 --KLNLLKGLNISHNNL------------------TVLNLSYNQFEGPIPRG--SQFNTFPNDSYVGNSGLCGFP 279 (365)
Q Consensus 227 --~l~~L~~L~Ls~N~L------------------~~L~ls~N~l~g~~p~~--~~~~~~~~~~~~~n~~lc~~~ 279 (365)
..+.++.++|++|.+ +.||+++|+++ .+|.. ..+..+....+.+|+..|.+|
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 234455555555543 37888888887 45553 345666677788888888765
No 34
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.5e-26 Score=209.97 Aligned_cols=201 Identities=14% Similarity=0.094 Sum_probs=100.6
Q ss_pred cCCcccEEEccCCCCCCcCC---CCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCc
Q 017800 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPP 81 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 81 (365)
.+++|++|+|++|.++ .+| ..+++|++| +|++|.++ .+|..++.+++|++|++++|++.+.+|.
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L-----------~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~ 168 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETL-----------TLARNPLR-ALPASIASLNRLRELSIRACPELTELPE 168 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEE-----------EEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEE-----------ECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh
Confidence 5889999999999999 445 344555555 44555544 4444455555555555555444444444
Q ss_pred cCcC---------CCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCc
Q 017800 82 SLVN---------CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 82 ~l~~---------l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
.+.. +++|++|++++|+++ .+|..++.+++|++|++++|.+++ +|..+ ..+++|++|++++|.+.+.
T Consensus 169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l--~~l~~L~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 169 PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAI--HHLPKLEELDLRGCTALRN 244 (328)
T ss_dssp CSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGG--GGCTTCCEEECTTCTTCCB
T ss_pred hHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhh--ccCCCCCEEECcCCcchhh
Confidence 4332 455555555555554 244445555555555555555443 22222 4445555555555554444
Q ss_pred cchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccc
Q 017800 153 LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 232 (365)
Q Consensus 153 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 232 (365)
+|.. +..++.|+.+++..... .+..+..+..+++|+.|+|++|++.+.+|+.++.+++|+
T Consensus 245 ~p~~-~~~l~~L~~L~L~~n~~-------------------~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 245 YPPI-FGGRAPLKRLILKDCSN-------------------LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp CCCC-TTCCCCCCEEECTTCTT-------------------CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred hHHH-hcCCCCCCEEECCCCCc-------------------hhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 4432 22222221111100000 000000011145566677777777777777777777766
Q ss_pred cccCcCCCcc
Q 017800 233 GLNISHNNLT 242 (365)
Q Consensus 233 ~L~Ls~N~L~ 242 (365)
.+++..|.+.
T Consensus 305 ~l~l~~~~~~ 314 (328)
T 4fcg_A 305 IILVPPHLQA 314 (328)
T ss_dssp EEECCGGGSC
T ss_pred EEeCCHHHHH
Confidence 6665555443
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.5e-25 Score=213.26 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=90.5
Q ss_pred CcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEc
Q 017800 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (365)
+++++|+|++|+++++.+ ..+++|++|++++| ++|++|+|++|.+++..+..|..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 579999999999999877 45566666666655 45666666666665544455555666666666
Q ss_pred cCCcCccCCCccCcCCCCCCEEEccC-CcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcc
Q 017800 71 NGNRLEGPLPPSLVNCHHLEVLNVGN-NQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (365)
Q Consensus 71 ~~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l 149 (365)
++|++++..+..|.++++|++|++++ |.+....+..|..+++|++|++++|++++. |. + ..+++|+.|++++|.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~-~--~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PN-L--TPLVGLEELEMSGNHF 230 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CC-C--TTCTTCCEEECTTSCC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-cc-c--cccccccEEECcCCcC
Confidence 66666544444555666666666665 333333333455566666666666665432 21 2 4555666666666666
Q ss_pred cCccchhhhhhhhhhc
Q 017800 150 TGVLLTGYLDNFKAMM 165 (365)
Q Consensus 150 ~~~~~~~~~~~l~~L~ 165 (365)
++..|.. +..++.|+
T Consensus 231 ~~~~~~~-~~~l~~L~ 245 (452)
T 3zyi_A 231 PEIRPGS-FHGLSSLK 245 (452)
T ss_dssp SEECGGG-GTTCTTCC
T ss_pred cccCccc-ccCccCCC
Confidence 5544433 44444443
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=9.3e-26 Score=219.90 Aligned_cols=71 Identities=24% Similarity=0.298 Sum_probs=55.0
Q ss_pred hhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc----------------EEECccCccccCCCCC--CCCCC
Q 017800 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT----------------VLNLSYNQFEGPIPRG--SQFNT 263 (365)
Q Consensus 202 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~----------------~L~ls~N~l~g~~p~~--~~~~~ 263 (365)
..+++|++|++++|++++.+|..++.+++|++|+|++|+++ .|++++|++++.+|.. ..+..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 45778999999999999888999999999999999999876 7999999999866653 22333
Q ss_pred CCCCccCCC
Q 017800 264 FPNDSYVGN 272 (365)
Q Consensus 264 ~~~~~~~~n 272 (365)
+....+.+|
T Consensus 401 L~~L~Ls~N 409 (520)
T 2z7x_B 401 LLSLNMSSN 409 (520)
T ss_dssp CCEEECCSS
T ss_pred CCEEECcCC
Confidence 444444444
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=2.2e-25 Score=221.24 Aligned_cols=125 Identities=19% Similarity=0.139 Sum_probs=102.9
Q ss_pred CcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEc
Q 017800 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (365)
+++++|++++|.++++.+ ..+++|++|++++| ++|++|+|++|.+++..|.+|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 578888898888888776 56788888888887 67888888888888777888888888888888
Q ss_pred cCCcCccCCCccCcCCCCCCEEEccCCcCCC-CCChhhcCCCCCcEEEeeccccccccCCCC
Q 017800 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPIGENT 131 (365)
Q Consensus 71 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 131 (365)
++|++++..+..++++++|++|++++|.+++ .+|..++.+++|++|++++|++++..+..+
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 173 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh
Confidence 8888887776788888888888888888875 468888888888888888888877655544
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=5.3e-25 Score=203.52 Aligned_cols=238 Identities=19% Similarity=0.228 Sum_probs=133.5
Q ss_pred cCCcccEEEccCCCCCCcCC-CCCCCCcEEECCCC-----------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccC
Q 017800 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~ls~N-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 72 (365)
.+++|+.|++++|.++.... ..+++|++|++++| ++|++|++++|.+++ +| .+..+++|++|++++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNE 119 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTT
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcC
Confidence 45677777777777766544 55677777777776 567777777777764 33 477777777777777
Q ss_pred CcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCc
Q 017800 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 73 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
|.+++ ++. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ + ..+++|+.|++++|.+++.
T Consensus 120 n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~--~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 120 DNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--I--ANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp SCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--G--GGCTTCSEEECTTSCCCCC
T ss_pred CcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--h--ccCCCCCEEEccCCccccc
Confidence 77774 333 6677777777777775544333 36677777777777776654333 2 5667777777777766654
Q ss_pred cchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccc-hhhhhhheeeEEcCCCccccCCChhhhccccc
Q 017800 153 LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK-MERILTIFMTIDLSSNKFQGGIPEVVGKLNLL 231 (365)
Q Consensus 153 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 231 (365)
.+ +..++.|+.+..................+..+.+..+.+... ....+++|++|++++|.+++. +.+..+++|
T Consensus 193 ~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 267 (347)
T 4fmz_A 193 SP---LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKL 267 (347)
T ss_dssp GG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred cc---ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHhcCCCc
Confidence 32 344444444333211111111111112233333333322211 133355566666666655532 345555556
Q ss_pred ccccCcCCCcc------------EEECccCccccCCC
Q 017800 232 KGLNISHNNLT------------VLNLSYNQFEGPIP 256 (365)
Q Consensus 232 ~~L~Ls~N~L~------------~L~ls~N~l~g~~p 256 (365)
++|++++|+++ .|++++|++++..|
T Consensus 268 ~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 268 KMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGH
T ss_pred CEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcCh
Confidence 66666655544 55555555554433
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=220.68 Aligned_cols=116 Identities=23% Similarity=0.235 Sum_probs=53.9
Q ss_pred cccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEcc
Q 017800 8 TLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71 (365)
Q Consensus 8 ~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 71 (365)
+++.||+++|+++++.+ ..+++|++|++++| ++|++|+|++|.+++..|.+|+++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 34455555555544433 33444555555544 344555555555444444444444444444444
Q ss_pred CCcCccCCCccCcCCCCCCEEEccCCcCCC-CCChhhcCCCCCcEEEeecccc
Q 017800 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRF 123 (365)
Q Consensus 72 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l 123 (365)
+|++++..+..++++++|++|++++|.+++ .+|..++.+++|++|++++|++
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 444443333334444444444444444443 2344444444444444444443
No 40
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.7e-27 Score=217.19 Aligned_cols=222 Identities=21% Similarity=0.245 Sum_probs=142.7
Q ss_pred cCCcccEEEccCCCCCCcCC-CCCCCCcEEECCCC---------------------CCCCEEEccCCcCcccCCcCc--c
Q 017800 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN---------------------LTHKVLDMRMNNFNGKIPRKF--V 60 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~ls~N---------------------~~L~~L~Ls~N~l~~~~p~~~--~ 60 (365)
+.++|+.|++++|.+ .+| .-...|+.|++++| ++|++|+|++|++++.+|..+ +
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred cCCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 346688888888888 444 11122555555544 457777777777777777665 6
Q ss_pred CCCCcCEEEccCCcCccCCCccCcCC-----CCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccc--cCCCCCc
Q 017800 61 KSCNLTSLNLNGNRLEGPLPPSLVNC-----HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP--IGENTTI 133 (365)
Q Consensus 61 ~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~~~~~~~ 133 (365)
.+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..++.+++|++|++++|++.+. .+..+.+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 777777777777777755 6666555 7777777777777776667777777777777777776554 2222223
Q ss_pred cCCCCccEEEcCCCcccCc--cchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEE
Q 017800 134 VPFPSLRIIDLSHNEFTGV--LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTID 211 (365)
Q Consensus 134 ~~l~~L~~L~ls~N~l~~~--~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 211 (365)
..+++|++|++++|.+++. ++...+. .+++|+.|+
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~-------------------------------------------~l~~L~~L~ 234 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAA-------------------------------------------ARVQLQGLD 234 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHH-------------------------------------------TTCCCSEEE
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHh-------------------------------------------cCCCCCEEE
Confidence 5667777777777777632 1111111 245667777
Q ss_pred cCCCccccCCC-hhhhcccccccccCcCCCcc-----------EEECccCccccCCCCCCCCCCCCCCccCCCC
Q 017800 212 LSSNKFQGGIP-EVVGKLNLLKGLNISHNNLT-----------VLNLSYNQFEGPIPRGSQFNTFPNDSYVGNS 273 (365)
Q Consensus 212 Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~L~-----------~L~ls~N~l~g~~p~~~~~~~~~~~~~~~n~ 273 (365)
|++|++++.+| ..+..+++|++|+|++|+|+ .||+++|++++. |....+..+....+.+|+
T Consensus 235 Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred CCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence 77777776664 34555677777777777655 778888888765 554444555555566664
No 41
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.7e-26 Score=235.53 Aligned_cols=240 Identities=20% Similarity=0.238 Sum_probs=166.8
Q ss_pred cCCcccEEEccCCCCCCc-----------------CC---C--CCCCCcEEECCCC-------------CCCCEEEccCC
Q 017800 5 GIATLYYLDLSNNFLTNI-----------------EY---F--PPTNMTQLNFDSN-------------LTHKVLDMRMN 49 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~-----------------~~---~--~~~~L~~L~ls~N-------------~~L~~L~Ls~N 49 (365)
++++|++|+|++|+|++. +| . .+++|++|++++| ++|++|+|++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 689999999999999992 45 4 6889999999988 68999999999
Q ss_pred c-Ccc-cCCcCccCCC-------CcCEEEccCCcCccCCCc--cCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEe
Q 017800 50 N-FNG-KIPRKFVKSC-------NLTSLNLNGNRLEGPLPP--SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (365)
Q Consensus 50 ~-l~~-~~p~~~~~l~-------~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 118 (365)
+ ++| .+|..++.++ +|+.|+|++|+++ .+|. .+.++++|++|++++|+++ .+| .++.+++|+.|++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 8 888 7887665554 9999999999999 7888 8999999999999999998 578 8889999999999
Q ss_pred eccccccccCCCCCccCCCC-ccEEEcCCCcccCccchhhhhhhhh--hcccCCCccccccc-CCCC------CCCccce
Q 017800 119 RSNRFWGPIGENTTIVPFPS-LRIIDLSHNEFTGVLLTGYLDNFKA--MMHGNNISVEVDYM-TPLN------SSNYYES 188 (365)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~-L~~L~ls~N~l~~~~~~~~~~~l~~--L~~l~~~~~~~~~~-~~~~------~~~~~~~ 188 (365)
++|+++ .+|..+ ..+++ |+.|++++|.++ .+|.. +..+.. |+.+++........ ...+ ....+..
T Consensus 603 s~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~L~-~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 603 DYNQIE-EIPEDF--CAFTDQVEGLGFSHNKLK-YIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp CSSCCS-CCCTTS--CEECTTCCEEECCSSCCC-SCCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred cCCccc-cchHHH--hhccccCCEEECcCCCCC-cCchh-hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 999997 777766 78888 999999999998 55643 444332 55444422111100 0000 1112334
Q ss_pred EEEEEeccc---cchhhhhhheeeEEcCCCccccCCChhhhc--------ccccccccCcCCCcc---------------
Q 017800 189 IILTIKGID---IKMERILTIFMTIDLSSNKFQGGIPEVVGK--------LNLLKGLNISHNNLT--------------- 242 (365)
Q Consensus 189 ~~~~~~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~L~--------------- 242 (365)
+.+..+.+. ..++..+++|+.|+|++|+|+ .+|..+.. +++|+.|+|++|+|+
T Consensus 678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~ 756 (876)
T 4ecn_A 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLS 756 (876)
T ss_dssp EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCC
T ss_pred EEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcC
Confidence 444333322 222333456666666666666 44443332 225666666666543
Q ss_pred EEECccCcccc
Q 017800 243 VLNLSYNQFEG 253 (365)
Q Consensus 243 ~L~ls~N~l~g 253 (365)
.|++++|++++
T Consensus 757 ~L~Ls~N~L~~ 767 (876)
T 4ecn_A 757 NMDVSYNCFSS 767 (876)
T ss_dssp EEECCSSCCSS
T ss_pred EEEeCCCCCCc
Confidence 56666666665
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=2e-25 Score=224.53 Aligned_cols=250 Identities=20% Similarity=0.189 Sum_probs=176.3
Q ss_pred CcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEc
Q 017800 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (365)
+++++|++++|.++++.+ ..+++|++|++++| ++|++|+|++|.+++..+.+|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 578889999999888776 56788888888887 67888999888888655557888888999999
Q ss_pred cCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCccc
Q 017800 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (365)
Q Consensus 71 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~ 150 (365)
++|++++..|..|+++++|++|++++|.+++..|..++.+++|++|++++|.+++..+..+....+++|+.|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 98888877777888888899999999888887788888888899999988888766555442345688888899888888
Q ss_pred CccchhhhhhhhhhcccCCCcc------------------------cccccCCCCC-----C--CccceEEEEEeccc--
Q 017800 151 GVLLTGYLDNFKAMMHGNNISV------------------------EVDYMTPLNS-----S--NYYESIILTIKGID-- 197 (365)
Q Consensus 151 ~~~~~~~~~~l~~L~~l~~~~~------------------------~~~~~~~~~~-----~--~~~~~~~~~~~~~~-- 197 (365)
+..|.. +..+..|..+..... ....+..... . ..+..+.+..+.+.
T Consensus 185 ~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 185 EFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CBCTTG-GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred ccChhh-hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 776654 555554433222110 0001111000 0 11444444443332
Q ss_pred -cchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCC-----------------------CccEEECccCcccc
Q 017800 198 -IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN-----------------------NLTVLNLSYNQFEG 253 (365)
Q Consensus 198 -~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-----------------------~L~~L~ls~N~l~g 253 (365)
...+..+++|+.|++++|++++..|..++.+++|+.|++++| +|+.|++++|++++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 233455677888888888888777777888888888877654 23378888888887
Q ss_pred CCCC
Q 017800 254 PIPR 257 (365)
Q Consensus 254 ~~p~ 257 (365)
..|.
T Consensus 344 ~~~~ 347 (680)
T 1ziw_A 344 IKSN 347 (680)
T ss_dssp CCTT
T ss_pred CChh
Confidence 6554
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=4.3e-26 Score=234.54 Aligned_cols=125 Identities=20% Similarity=0.182 Sum_probs=106.0
Q ss_pred CCcccEEEccCCCCCCcCC---CCCCCCcEEECCCC--------------CCCCEEEccCCcCcccCCcCccCCCCcCEE
Q 017800 6 IATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N--------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 68 (365)
.+++++|||++|.++++.+ ..+++|++|++++| ++|++|+|++|.+++..|.+|+++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 4688999999999998876 67888999999888 679999999999998889999999999999
Q ss_pred EccCCcCccCCCcc--CcCCCCCCEEEccCCcCCCCCC-hhhcCCCCCcEEEeeccccccccCCC
Q 017800 69 NLNGNRLEGPLPPS--LVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGEN 130 (365)
Q Consensus 69 ~L~~N~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~ 130 (365)
+|++|.+++.+|.. +.++++|++|++++|.+++..+ ..|+.+++|++|++++|.+++..+..
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 99999998766655 8889999999999999987654 57888999999999999887655543
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=3.8e-25 Score=203.20 Aligned_cols=238 Identities=18% Similarity=0.210 Sum_probs=185.7
Q ss_pred CcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEc
Q 017800 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (365)
+++++|++++|+++++.+ ..+++|++|++++| ++|++|++++|.++ .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 578999999999999876 67889999999998 68999999999998 6666554 79999999
Q ss_pred cCCcCccCCCccCcCCCCCCEEEccCCcCCC--CCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCc
Q 017800 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQIND--NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (365)
Q Consensus 71 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~ 148 (365)
++|++++..+..+.++++|++|++++|.++. ..+..+..+++|++|++++|.++. +|... .++|+.|++++|.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~----~~~L~~L~l~~n~ 203 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL----PPSLTELHLDGNK 203 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC----CTTCSEEECTTSC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc----cccCCEEECCCCc
Confidence 9999998777789999999999999999964 677889999999999999999864 55543 3899999999999
Q ss_pred ccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcc
Q 017800 149 FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228 (365)
Q Consensus 149 l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 228 (365)
+++..|.. +..++.|+.+++.... ..+.....+..+++|+.|+|++|+++ .+|..+..+
T Consensus 204 l~~~~~~~-~~~l~~L~~L~Ls~n~-------------------l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 204 ITKVDAAS-LKGLNNLAKLGLSFNS-------------------ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp CCEECTGG-GTTCTTCCEEECCSSC-------------------CCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred CCccCHHH-hcCCCCCCEEECCCCc-------------------CceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence 99876654 7777777666551111 11122233445789999999999999 889999999
Q ss_pred cccccccCcCCCccEEECccCccccCCCCCCCCCCCCCCccCCCCCCC
Q 017800 229 NLLKGLNISHNNLTVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLC 276 (365)
Q Consensus 229 ~~L~~L~Ls~N~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~lc 276 (365)
++|++|++++|+|+.+ ..+.+.+..+.. ....+....+.+||..+
T Consensus 263 ~~L~~L~l~~N~i~~~--~~~~f~~~~~~~-~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 263 KYIQVVYLHNNNISAI--GSNDFCPPGYNT-KKASYSGVSLFSNPVQY 307 (330)
T ss_dssp SSCCEEECCSSCCCCC--CTTSSSCSSCCT-TSCCCSEEECCSSSSCG
T ss_pred CCcCEEECCCCcCCcc--ChhhcCCccccc-ccccccceEeecCcccc
Confidence 9999999999999843 334444332221 23344455667777654
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=2.8e-25 Score=204.27 Aligned_cols=216 Identities=20% Similarity=0.278 Sum_probs=178.2
Q ss_pred CcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEc
Q 017800 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (365)
++|++|++++|.++++.+ ..+++|++|++++| ++|++|++++|.++ .+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 589999999999998876 67889999999998 78999999999998 6666655 89999999
Q ss_pred cCCcCccCCCccCcCCCCCCEEEccCCcCCC--CCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCc
Q 017800 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQIND--NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (365)
Q Consensus 71 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~ 148 (365)
++|++++..+..+.++++|++|++++|.++. ..|..+..+ +|++|++++|++++ +|..+ .++|+.|++++|.
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~----~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL----PETLNELHLDHNK 204 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS----CSSCSCCBCCSSC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccc----cCCCCEEECCCCc
Confidence 9999997777779999999999999999963 677788888 99999999999975 55543 3799999999999
Q ss_pred ccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcc
Q 017800 149 FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228 (365)
Q Consensus 149 l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 228 (365)
+++..+.. +..++.|+.+++... . ..++....+..+++|+.|+|++|+++ .+|..++.+
T Consensus 205 i~~~~~~~-l~~l~~L~~L~L~~N---~----------------l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 205 IQAIELED-LLRYSKLYRLGLGHN---Q----------------IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp CCCCCTTS-STTCTTCSCCBCCSS---C----------------CCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred CCccCHHH-hcCCCCCCEEECCCC---c----------------CCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 99876654 777777776665221 1 11222334455789999999999999 888889999
Q ss_pred cccccccCcCCCcc--------------------EEECccCccc
Q 017800 229 NLLKGLNISHNNLT--------------------VLNLSYNQFE 252 (365)
Q Consensus 229 ~~L~~L~Ls~N~L~--------------------~L~ls~N~l~ 252 (365)
++|+.|++++|+|+ .+++++|++.
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 99999999999876 5788888876
No 46
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2.4e-26 Score=205.51 Aligned_cols=196 Identities=19% Similarity=0.181 Sum_probs=157.7
Q ss_pred cCCcccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCc
Q 017800 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 84 (365)
.+++|+.|++++|.++.... +...++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+.
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~----------l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 106 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQG----------IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFD 106 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTT----------GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cccceeeeeeCCCCcccccc----------cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhc
Confidence 34566777777776654322 1111556888888898885 3 4788999999999999999987777789
Q ss_pred CCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhh
Q 017800 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (365)
Q Consensus 85 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L 164 (365)
++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..+.. +..
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~---- 179 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF--DKLTNLTELDLSYNQLQSLPEGV-FDK---- 179 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT-TTT----
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh--ccCccCCEEECCCCCcCccCHHH-hcC----
Confidence 99999999999999998777778999999999999999987666555 78899999999999998665432 222
Q ss_pred cccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc--
Q 017800 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT-- 242 (365)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~-- 242 (365)
+++|+.|++++|++++..|..++.+++|+.|++++|.++
T Consensus 180 ---------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 180 ---------------------------------------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp ---------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ---------------------------------------CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 467889999999999888888999999999999999765
Q ss_pred -----EEECccCccccCCCCC
Q 017800 243 -----VLNLSYNQFEGPIPRG 258 (365)
Q Consensus 243 -----~L~ls~N~l~g~~p~~ 258 (365)
.++++.|+++|.+|..
T Consensus 221 ~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 221 CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTTHHHHHHHHHTGGGBBCT
T ss_pred CcHHHHHHHHHHhCCCcccCc
Confidence 7888899999999874
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=5.2e-25 Score=210.29 Aligned_cols=211 Identities=19% Similarity=0.201 Sum_probs=119.6
Q ss_pred CcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEc
Q 017800 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (365)
++++.|+|++|+++++.+ ..+++|++|++++| ++|++|+|++|++++..+..|..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 578999999999999887 45566666666666 45666666666666554555666666666666
Q ss_pred cCCcCccCCCccCcCCCCCCEEEccC-CcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcc
Q 017800 71 NGNRLEGPLPPSLVNCHHLEVLNVGN-NQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (365)
Q Consensus 71 ~~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l 149 (365)
++|++++..+..|.++++|++|++++ |.+....+..|..+++|++|++++|.++ .+|. + ..+++|+.|++++|.+
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~--~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-L--TPLIKLDELDLSGNHL 219 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-C--TTCSSCCEEECTTSCC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-c--CCCcccCEEECCCCcc
Confidence 66666655555666666666666666 3333333335666666666666666664 2332 2 5566666666666666
Q ss_pred cCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhccc
Q 017800 150 TGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN 229 (365)
Q Consensus 150 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 229 (365)
++..|.. +..+++|+.+.+.... +..+....+..+++|+.|+|++|+|++..+..+..++
T Consensus 220 ~~~~~~~-~~~l~~L~~L~L~~n~-------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 220 SAIRPGS-FQGLMHLQKLWMIQSQ-------------------IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp CEECTTT-TTTCTTCCEEECTTCC-------------------CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred CccChhh-hccCccCCEEECCCCc-------------------eeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 6554433 4444444333321100 0111112222344555555555555544444455555
Q ss_pred ccccccCcCCCc
Q 017800 230 LLKGLNISHNNL 241 (365)
Q Consensus 230 ~L~~L~Ls~N~L 241 (365)
+|+.|+|++|.+
T Consensus 280 ~L~~L~L~~Np~ 291 (440)
T 3zyj_A 280 HLERIHLHHNPW 291 (440)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEcCCCCc
Confidence 555555554444
No 48
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2.9e-24 Score=191.76 Aligned_cols=178 Identities=24% Similarity=0.245 Sum_probs=130.4
Q ss_pred cccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCC
Q 017800 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH 87 (365)
Q Consensus 8 ~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 87 (365)
+.+.++++++.++.++....++ ++.|++++|++++..+..|..+++|++|++++|+++...+..|.+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~-----------l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~ 85 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPAD-----------TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK 85 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTT-----------CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCT
T ss_pred CCCEEEccCCCCCccCCCCCCC-----------CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCC
Confidence 5788999999999755433333 36678888888866667888888888888888888865556677888
Q ss_pred CCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhccc
Q 017800 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHG 167 (365)
Q Consensus 88 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l 167 (365)
+|++|++++|++++..+..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..+.. +..
T Consensus 86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~-~~~------- 155 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNELQSLPKGV-FDK------- 155 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT-TTT-------
T ss_pred CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcCcCCCEEECCCCcCCccCHhH-ccC-------
Confidence 88888888888888666677888888888888888877666655 77888888888888887654322 332
Q ss_pred CCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 168 NNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
+++|+.|+|++|++++..+..|..+++|++|+|++|+|+
T Consensus 156 ------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 156 ------------------------------------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp ------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ------------------------------------CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 345667777777777666666666776665555555444
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=6.9e-25 Score=196.38 Aligned_cols=145 Identities=20% Similarity=0.173 Sum_probs=86.7
Q ss_pred ccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCC
Q 017800 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (365)
Q Consensus 9 L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 88 (365)
|++|++++|+++++.+..+.++ ++|++|++++|.+++..+..|..+++|++|++++|++++..+..+.++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l--------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSF--------PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTC--------TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred ccEEECCCCcccccCHhHhccc--------cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 4555555555544443222222 23466666666666555556666777777777777776666666666777
Q ss_pred CCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccc-cCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhh
Q 017800 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP-IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (365)
Q Consensus 89 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L 164 (365)
|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+ ..+++|+.|++++|.+++..+.. +..+..+
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L 175 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCTD-LRVLHQM 175 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECCSSCCCEECGGG-GHHHHTC
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh--ccCCCCCEEECCCCCCCcCCHHH-hhhhhhc
Confidence 77777777777665554566667777777777766542 34444 56667777777777666554433 4444433
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.4e-24 Score=213.73 Aligned_cols=142 Identities=21% Similarity=0.219 Sum_probs=120.4
Q ss_pred CcccEEEccCCCCCCcCCCCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCC
Q 017800 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 73 (365)
...+++|+++|++++++..-.++|++|++++| ++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 34579999999999866555689999999999 78999999999999888999999999999999999
Q ss_pred cCccCCCccCcCCCCCCEEEccCCcCCC-CCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCc--cEEEcCCCcc-
Q 017800 74 RLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL--RIIDLSHNEF- 149 (365)
Q Consensus 74 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L--~~L~ls~N~l- 149 (365)
+++ .+|.. .+++|++|++++|++++ ..|..|+.+++|++|++++|++.+. .+ ..+++| +.|++++|.+
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~--~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DL--LPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TT--GGGTTSCEEEEEEEESSCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---ch--hhhhhceeeEEEeeccccc
Confidence 999 56766 89999999999999998 3468999999999999999998652 22 555666 9999999988
Q ss_pred -cCccchh
Q 017800 150 -TGVLLTG 156 (365)
Q Consensus 150 -~~~~~~~ 156 (365)
++..|..
T Consensus 183 ~~~~~~~~ 190 (562)
T 3a79_B 183 IKGGETES 190 (562)
T ss_dssp CCSSSCCE
T ss_pred ccccCccc
Confidence 6655543
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=9.8e-25 Score=202.36 Aligned_cols=231 Identities=19% Similarity=0.196 Sum_probs=172.0
Q ss_pred CcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEc
Q 017800 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (365)
++|++|++++|+++++.+ ..+++|++|++++| ++|++|++++|.+++..+..|..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 589999999999998876 67899999999998 68999999999999665556999999999999
Q ss_pred cCCcCccCCC-ccCcCCCCCCEEEccCC-cCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCc
Q 017800 71 NGNRLEGPLP-PSLVNCHHLEVLNVGNN-QINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (365)
Q Consensus 71 ~~N~l~~~~p-~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~ 148 (365)
++|++++..+ ..+.++++|++|++++| .+++..|..+..+++|++|++++|.+++..|..+ ..+++|++|++++|.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL--KSIQNVSHLILHMKQ 209 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEEEECSC
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH--hccccCCeecCCCCc
Confidence 9999995443 47899999999999999 5777667889999999999999999998888877 899999999999999
Q ss_pred ccCccchhhhhhhhhhcccCCCcccccccC--CC---CCCCccceEEEEEecccc-------chhhhhhheeeEEcCCCc
Q 017800 149 FTGVLLTGYLDNFKAMMHGNNISVEVDYMT--PL---NSSNYYESIILTIKGIDI-------KMERILTIFMTIDLSSNK 216 (365)
Q Consensus 149 l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~-------~~~~~l~~L~~L~Ls~N~ 216 (365)
++. +|..++..++.|+.++.......... .. .....+..+.+....+.. ..+..+++|+.||+++|+
T Consensus 210 l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 210 HIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp STT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccc-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 864 45555666777776655222211111 00 011223333333333322 122346678888888888
Q ss_pred cccCCChh-hhcccccccccCcCCCc
Q 017800 217 FQGGIPEV-VGKLNLLKGLNISHNNL 241 (365)
Q Consensus 217 l~~~~p~~-l~~l~~L~~L~Ls~N~L 241 (365)
++ .+|.. ++.+++|++|+|++|.+
T Consensus 289 l~-~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 289 LK-SVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred CC-ccCHHHHhcCCCCCEEEeeCCCc
Confidence 88 45544 47777777555554443
No 52
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.7e-24 Score=200.06 Aligned_cols=254 Identities=21% Similarity=0.247 Sum_probs=190.1
Q ss_pred cCCcccEEEccCCCCCCcCC-CCCCCCcEEECCCC-----------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccC
Q 017800 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~ls~N-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 72 (365)
.+++|++|++++|.+++..+ ..+++|++|++++| ++|++|++++|.+++. +. +..+++|++|++++
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGA 141 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTT
T ss_pred hcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCC
Confidence 57899999999999998876 78899999999998 7899999999999854 43 88999999999999
Q ss_pred CcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCc
Q 017800 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 73 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ + ..+++|+.|++++|.+++.
T Consensus 142 n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 142 NHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--L--ASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp CTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--G--GGCTTCCEEECCSSCCCCC
T ss_pred CCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--c--cCCCccceeecccCCCCCC
Confidence 97664444 48889999999999999887433 7889999999999998865433 3 6788888888888888876
Q ss_pred cchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEecccc-chhhhhhheeeEEcCCCccccCCChhhhccccc
Q 017800 153 LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI-KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL 231 (365)
Q Consensus 153 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 231 (365)
.+ +..++.|+.++........+........+..+.+..+.+.. ..+..+++|+.|++++|++++. +.+..+++|
T Consensus 215 ~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 289 (347)
T 4fmz_A 215 TP---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL 289 (347)
T ss_dssp GG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred ch---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence 44 55666666655533222222222223344555555444332 2345578999999999999854 468899999
Q ss_pred ccccCcCCCcc--------------EEECccCccccCCCCCCCCCCCCCCccCCCC
Q 017800 232 KGLNISHNNLT--------------VLNLSYNQFEGPIPRGSQFNTFPNDSYVGNS 273 (365)
Q Consensus 232 ~~L~Ls~N~L~--------------~L~ls~N~l~g~~p~~~~~~~~~~~~~~~n~ 273 (365)
+.|++++|+++ .|++++|++++..| ...+..+....+.+|+
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred CEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 99999999876 89999999998766 4445556666666664
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=6.4e-25 Score=215.28 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=134.6
Q ss_pred CCcccEEEccCCCCCCcCCCCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccC
Q 017800 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 72 (365)
++...+.|.++|.++.+++.-.++|++|++++| ++|++|++++|.+++..|.+|+.+++|++|++++
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCCCceEECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence 455556899999999887766689999999999 7899999999999998889999999999999999
Q ss_pred CcCccCCCccCcCCCCCCEEEccCCcCCC-CCChhhcCCCCCcEEEeeccccccccC-CCCCccCCCCccEEEcCCCccc
Q 017800 73 NRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPIG-ENTTIVPFPSLRIIDLSHNEFT 150 (365)
Q Consensus 73 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~L~ls~N~l~ 150 (365)
|++++..|..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+.+.+| ..+ ..+++|++|++++|.++
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF--AGLTSLNELEIKALSLR 161 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT--TTCCEEEEEEEEETTCC
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh--hcccccCeeeccCCccc
Confidence 99998777779999999999999999987 357789999999999999999656665 445 88999999999999999
Q ss_pred Cccchhhhhhhhhh
Q 017800 151 GVLLTGYLDNFKAM 164 (365)
Q Consensus 151 ~~~~~~~~~~l~~L 164 (365)
+..|.. ++.++.|
T Consensus 162 ~~~~~~-l~~l~~L 174 (549)
T 2z81_A 162 NYQSQS-LKSIRDI 174 (549)
T ss_dssp EECTTT-TTTCSEE
T ss_pred ccChhh-hhccccC
Confidence 877755 4444433
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=2.4e-24 Score=206.37 Aligned_cols=246 Identities=21% Similarity=0.143 Sum_probs=181.8
Q ss_pred cCCcccEEEccCCCCCCcCC-CCCCCCcEEECCCC----------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCC
Q 017800 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~ls~N----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 73 (365)
++++|++|++++|.+++.+. ..+++|++|++++| ++|++|++++|.+++. | ++.+++|++|++++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTN 116 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSS
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCC
Confidence 57899999999999998744 67889999999988 7899999999999964 3 889999999999999
Q ss_pred cCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCcc
Q 017800 74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153 (365)
Q Consensus 74 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~ 153 (365)
++++ +| ++.+++|++|++++|++++ ++ ++.+++|++|++++|...+.++ + ..+++|+.|++++|.+++.
T Consensus 117 ~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~--~--~~l~~L~~L~ls~n~l~~l- 185 (457)
T 3bz5_A 117 KLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD--V--TPQTQLTTLDCSFNKITEL- 185 (457)
T ss_dssp CCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC--C--TTCTTCCEEECCSSCCCCC-
T ss_pred cCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc--c--ccCCcCCEEECCCCcccee-
Confidence 9996 44 8899999999999999998 44 7889999999999996655552 3 7889999999999999874
Q ss_pred chhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhccccccc
Q 017800 154 LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG 233 (365)
Q Consensus 154 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 233 (365)
| +..++.|+.+.........+ .......+..+.+..+.+..-....+++|+.|++++|++++.. ++.+++|+.
T Consensus 186 ~---l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~ 258 (457)
T 3bz5_A 186 D---VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELD---VSTLSKLTT 258 (457)
T ss_dssp C---CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC---CTTCTTCCE
T ss_pred c---cccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcC---HHHCCCCCE
Confidence 3 45566666555422222111 1122234455555555444322445788999999999999754 456677788
Q ss_pred ccCcCCCccEEECccCccccCCCCCCCCCCCCCCccCCC
Q 017800 234 LNISHNNLTVLNLSYNQFEGPIPRGSQFNTFPNDSYVGN 272 (365)
Q Consensus 234 L~Ls~N~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~~n 272 (365)
|++++|+|+.+++++|++.|.+|.. .+..+....+.+|
T Consensus 259 L~l~~n~L~~L~l~~n~~~~~~~~~-~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 259 LHCIQTDLLEIDLTHNTQLIYFQAE-GCRKIKELDVTHN 296 (457)
T ss_dssp EECTTCCCSCCCCTTCTTCCEEECT-TCTTCCCCCCTTC
T ss_pred EeccCCCCCEEECCCCccCCccccc-ccccCCEEECCCC
Confidence 8888888888888888877777642 2333444444444
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=6.5e-25 Score=217.51 Aligned_cols=222 Identities=19% Similarity=0.172 Sum_probs=166.6
Q ss_pred CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCE
Q 017800 25 FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEV 91 (365)
Q Consensus 25 ~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 91 (365)
..+.+++.+++++| ++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 34678999999988 78999999999999888889999999999999999999988888999999999
Q ss_pred EEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCc
Q 017800 92 LNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNIS 171 (365)
Q Consensus 92 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~ 171 (365)
|+|++|.+++..+..|+.+++|++|++++|.+++..|..+ ..+++|+.|++++|.+++..+ +.++.|..++...
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~----~~l~~L~~L~l~~ 201 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNRLTHVDL----SLIPSLFHANVSY 201 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECTTSCCSBCCG----GGCTTCSEEECCS
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh--hcCCcCcEEECcCCCCCCcCh----hhhhhhhhhhccc
Confidence 9999999998666667999999999999999998888777 899999999999999987632 3334443332211
Q ss_pred ccccc----------------cCCCC--CCCccceEEEEEecccc-chhhhhhheeeEEcCCCccccCCChhhhcccccc
Q 017800 172 VEVDY----------------MTPLN--SSNYYESIILTIKGIDI-KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 232 (365)
Q Consensus 172 ~~~~~----------------~~~~~--~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 232 (365)
..... +...+ ....+..+.+..+.+.. ..+..+++|+.|+|++|.+++.+|..++.+++|+
T Consensus 202 n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 281 (597)
T 3oja_B 202 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281 (597)
T ss_dssp SCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred CccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCC
Confidence 11000 00000 01123334443333322 2344567788888888888877788888888888
Q ss_pred cccCcCCCcc-------------EEECccCccc
Q 017800 233 GLNISHNNLT-------------VLNLSYNQFE 252 (365)
Q Consensus 233 ~L~Ls~N~L~-------------~L~ls~N~l~ 252 (365)
.|+|++|+++ .|++++|+++
T Consensus 282 ~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 282 RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp EEECTTSCCCEEECSSSCCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCCCCcccccCCCCcEEECCCCCCC
Confidence 8888887665 5666666665
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=5.2e-24 Score=190.63 Aligned_cols=212 Identities=21% Similarity=0.171 Sum_probs=164.8
Q ss_pred EEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCC
Q 017800 11 YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLE 90 (365)
Q Consensus 11 ~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 90 (365)
..+.++..++.++..-. ++|++|++++|.+++..+..|..+++|++|++++|++++..+..+.++++|+
T Consensus 11 ~~~c~~~~l~~ip~~l~-----------~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 79 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP-----------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79 (276)
T ss_dssp EEECTTSCCSSCCSSSC-----------TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCC
T ss_pred eEEecCCCccccCCCCC-----------CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCC
Confidence 45666666665443221 2457889999999987777999999999999999999988888999999999
Q ss_pred EEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCc-cchhhhhhhhhhcccCC
Q 017800 91 VLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV-LLTGYLDNFKAMMHGNN 169 (365)
Q Consensus 91 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~-~~~~~~~~l~~L~~l~~ 169 (365)
+|++++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. +|.. +..
T Consensus 80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~-~~~--------- 147 (276)
T 2z62_A 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-FSN--------- 147 (276)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGG-GGG---------
T ss_pred EEECCCCccCccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCchh-hcc---------
Confidence 99999999999888899999999999999999987666555 8999999999999999874 3543 443
Q ss_pred CcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccc----cccCcCCCcc---
Q 017800 170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK----GLNISHNNLT--- 242 (365)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~L~--- 242 (365)
+++|++|++++|++++..+..+..+++|+ .|++++|+++
T Consensus 148 ----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~ 193 (276)
T 2z62_A 148 ----------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (276)
T ss_dssp ----------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred ----------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccC
Confidence 34566777777777766666666666666 6677777654
Q ss_pred ----------EEECccCccccCCCCC-CCCCCCCCCccCCCCCCCCcC
Q 017800 243 ----------VLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCGFP 279 (365)
Q Consensus 243 ----------~L~ls~N~l~g~~p~~-~~~~~~~~~~~~~n~~lc~~~ 279 (365)
.|++++|++++..+.. ..+..+....+.+|+..|+++
T Consensus 194 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 194 PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp TTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 7888888888654432 235566667788888888765
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=2.2e-24 Score=212.27 Aligned_cols=140 Identities=22% Similarity=0.191 Sum_probs=79.4
Q ss_pred cCCcccEEEccCCCCCCcCC---CCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEE
Q 017800 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 68 (365)
++++|++||+++|+++++.+ ..+++|++|++++| ++|++|++++|.+++..+..++.+++|++|
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEE
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEE
Confidence 45566666666666665554 34556666666665 456666666666664444456666666666
Q ss_pred EccCCcCcc-CCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCC----cEEEeeccccccccCCCCCccCCCCccEEE
Q 017800 69 NLNGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPEL----QVLILRSNRFWGPIGENTTIVPFPSLRIID 143 (365)
Q Consensus 69 ~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L----~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 143 (365)
++++|.+++ .+|..++++++|++|++++|++++..|..++.+++| +.|++++|.+.+..+..+ ... +|+.|+
T Consensus 130 ~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~--~~~-~L~~L~ 206 (570)
T 2z63_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEI-RLHKLT 206 (570)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT--TTC-EEEEEE
T ss_pred ecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHh--ccC-cceeEe
Confidence 666666654 345666666666666666666665555555555555 566666666554444333 221 444444
Q ss_pred cCCC
Q 017800 144 LSHN 147 (365)
Q Consensus 144 ls~N 147 (365)
+++|
T Consensus 207 l~~n 210 (570)
T 2z63_A 207 LRNN 210 (570)
T ss_dssp EESC
T ss_pred cccc
Confidence 4443
No 58
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=7.7e-24 Score=190.94 Aligned_cols=132 Identities=21% Similarity=0.177 Sum_probs=85.8
Q ss_pred cCCcccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCc
Q 017800 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 84 (365)
++++++.+++++|.++.+++...+++ +.|+|++|.+++..|..|..+++|++|+|++|.+++..+ ..
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~~~l-----------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~ 74 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLPKDT-----------TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DG 74 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCCTTC-----------CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CS
T ss_pred ccCCccEEECCCCCCCcCCCCCCCCC-----------CEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CC
Confidence 67899999999999998765444455 555666666665556666666666666666666664322 25
Q ss_pred CCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCc
Q 017800 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 85 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
.+++|++|++++|+++. +|..+..+++|++|++++|++++..+..+ ..+++|+.|++++|.+++.
T Consensus 75 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~--~~l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGAL--RGLGELQELYLKGNELKTL 139 (290)
T ss_dssp CCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTT--TTCTTCCEEECTTSCCCCC
T ss_pred CCCcCCEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHH--cCCCCCCEEECCCCCCCcc
Confidence 56666666666666664 55566666666666666666655444444 5666666666666666644
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=4e-24 Score=204.86 Aligned_cols=221 Identities=20% Similarity=0.169 Sum_probs=150.5
Q ss_pred cCCcccEEEccCCCCCCcCCCCCCCCcEEECCCC----------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCc
Q 017800 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 74 (365)
++++|++|++++|+++++....+++|++|++++| ++|++|++++|...+.+ .++.+++|++|++++|+
T Consensus 104 ~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp TCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred CCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 5788999999999998864478888999998888 68899999999666566 47788899999999999
Q ss_pred CccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccc
Q 017800 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (365)
Q Consensus 75 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~ 154 (365)
+++ +| +..+++|+.|++++|++++. .++.+++|++|++++|++++ +| + ..+++|+.|++++|.+++..+
T Consensus 182 l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~--~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 182 ITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--V--TPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp CCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--C--TTCTTCSEEECCSSCCSCCCC
T ss_pred cce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--c--cccCCCCEEEeeCCcCCCcCH
Confidence 886 45 78888899999999998874 37788889999999998876 44 3 778889999999998887643
Q ss_pred hhhhhhhhhh-------cccCCCccc---ccccCCCCCC--------CccceEEEEEeccccchhhhhhheeeEEcCCCc
Q 017800 155 TGYLDNFKAM-------MHGNNISVE---VDYMTPLNSS--------NYYESIILTIKGIDIKMERILTIFMTIDLSSNK 216 (365)
Q Consensus 155 ~~~~~~l~~L-------~~l~~~~~~---~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 216 (365)
.. +.+++.| +.++..... .......+.. .....+......+..-....+++|+.|++++|+
T Consensus 251 ~~-l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 251 ST-LSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp TT-CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred HH-CCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence 32 4444322 111110000 0000000000 011111111111111112335788888888888
Q ss_pred cccCCChhhhcccccccccCcCCCcc
Q 017800 217 FQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 217 l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
+++. + ++.+++|+.|++++|+|+
T Consensus 330 l~~l-~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 330 LTEL-D--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp CSCC-C--CTTCTTCSEEECCSSCCC
T ss_pred cccc-c--cccCCcCcEEECCCCCCC
Confidence 8874 3 788888888888888875
No 60
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=3.4e-24 Score=206.11 Aligned_cols=255 Identities=20% Similarity=0.214 Sum_probs=147.7
Q ss_pred cCCcccEEEccCCCCCCcCC-CCCCCCcEEECCCC-----------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccC
Q 017800 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~ls~N-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 72 (365)
.+++|++||+++|.+++..+ ..+++|++|++++| ++|++|++++|.+++..+ +..+++|++|++++
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 143 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 143 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEE
T ss_pred hhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCC
Confidence 46788888888888887766 67778888888777 677888888887775432 67777777777777
Q ss_pred CcCccCCC-------------------ccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCc
Q 017800 73 NRLEGPLP-------------------PSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTI 133 (365)
Q Consensus 73 N~l~~~~p-------------------~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 133 (365)
|.+++..+ ..+.++++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +
T Consensus 144 n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~-- 217 (466)
T 1o6v_A 144 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--L-- 217 (466)
T ss_dssp EEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G--
T ss_pred CccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--c--
Confidence 77663210 1245666777777777777653 246667777777777777665443 2
Q ss_pred cCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCccccccc----------------------CCCCCCCccceEEE
Q 017800 134 VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYM----------------------TPLNSSNYYESIIL 191 (365)
Q Consensus 134 ~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~----------------------~~~~~~~~~~~~~~ 191 (365)
..+++|+.|++++|.+++. + .+..++.|+.++......... ........+..+.+
T Consensus 218 ~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 294 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKDI-G--TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL 294 (466)
T ss_dssp GGCTTCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred cccCCCCEEECCCCCcccc-h--hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEc
Confidence 4455666666666655543 1 134444444433321111111 11111122333333
Q ss_pred EEeccccc-hhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc------------EEECccCccccCCCCC
Q 017800 192 TIKGIDIK-MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT------------VLNLSYNQFEGPIPRG 258 (365)
Q Consensus 192 ~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~------------~L~ls~N~l~g~~p~~ 258 (365)
..+.+... ....+++|+.|++++|++++..| ++.+++|+.|++++|+++ .|++++|++++..| .
T Consensus 295 ~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~ 371 (466)
T 1o6v_A 295 NENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP-L 371 (466)
T ss_dssp CSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-G
T ss_pred CCCcccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch-h
Confidence 33332211 13345666666676666665544 566677777777776554 67777777776665 3
Q ss_pred CCCCCCCCCccCCCC
Q 017800 259 SQFNTFPNDSYVGNS 273 (365)
Q Consensus 259 ~~~~~~~~~~~~~n~ 273 (365)
..+..+......+|+
T Consensus 372 ~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 372 ANLTRITQLGLNDQA 386 (466)
T ss_dssp TTCTTCCEEECCCEE
T ss_pred hcCCCCCEEeccCCc
Confidence 334444444444444
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.4e-25 Score=204.57 Aligned_cols=204 Identities=19% Similarity=0.151 Sum_probs=104.8
Q ss_pred cCCcccEEEccCCCCCCcCCCCC--CCCcEEECCCCCCCCEEEccCCcCcccCCcCccCC-----CCcCEEEccCCcCcc
Q 017800 5 GIATLYYLDLSNNFLTNIEYFPP--TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKS-----CNLTSLNLNGNRLEG 77 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~~~~--~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~ 77 (365)
++++|++|++++|++++..|..+ ..+. +|++|+|++|.+++. |..++.+ ++|++|++++|++++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~--------~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~ 163 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGP--------DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN 163 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSC--------CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCC--------CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc
Confidence 58899999999999998777322 2222 225555555555544 4444443 555555555555554
Q ss_pred CCCccCcCCCCCCEEEccCCcCCCC--CChhh--cCCCCCcEEEeecccccc--ccCCCCCccCCCCccEEEcCCCcccC
Q 017800 78 PLPPSLVNCHHLEVLNVGNNQINDN--FPNWL--EILPELQVLILRSNRFWG--PIGENTTIVPFPSLRIIDLSHNEFTG 151 (365)
Q Consensus 78 ~~p~~l~~l~~L~~L~L~~N~l~~~--~p~~l--~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~ls~N~l~~ 151 (365)
..|..++.+++|++|++++|++.+. .|..+ ..+++|++|++++|++++ .++..+ +..+++|+.|++++|.+++
T Consensus 164 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL-AAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH-HHTTCCCSEEECTTSCCCS
T ss_pred chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH-HhcCCCCCEEECCCCcCCc
Confidence 4445555555555555555554432 12222 445555555555555542 111110 1234555555555555555
Q ss_pred ccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhccccc
Q 017800 152 VLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL 231 (365)
Q Consensus 152 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 231 (365)
..|...+..++.|+.+++... .+.. ++..+ .++|+.|||++|+|++. |. +..+++|
T Consensus 243 ~~~~~~~~~l~~L~~L~Ls~N---~l~~----------------ip~~~---~~~L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 243 AAGAPSCDWPSQLNSLNLSFT---GLKQ----------------VPKGL---PAKLSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp SCCCSCCCCCTTCCEEECTTS---CCSS----------------CCSSC---CSEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred ccchhhhhhcCCCCEEECCCC---ccCh----------------hhhhc---cCCceEEECCCCCCCCC-hh-HhhCCCC
Confidence 433221222222222222000 0000 00001 14677888888888855 55 7778888
Q ss_pred ccccCcCCCcc
Q 017800 232 KGLNISHNNLT 242 (365)
Q Consensus 232 ~~L~Ls~N~L~ 242 (365)
++|+|++|+++
T Consensus 299 ~~L~L~~N~l~ 309 (312)
T 1wwl_A 299 GNLSLKGNPFL 309 (312)
T ss_dssp EEEECTTCTTT
T ss_pred CEEeccCCCCC
Confidence 87777766654
No 62
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1.4e-23 Score=201.89 Aligned_cols=238 Identities=22% Similarity=0.237 Sum_probs=172.5
Q ss_pred cCCcccEEEccCCCCCCcCC-CCCCCCcEEECCCC-----------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccC
Q 017800 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~ls~N-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 72 (365)
++++++.|+++++.++.+.. ..+++|++|++++| ++|++|++++|.+++..| ++.+++|++|++++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 121 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCC
Confidence 36789999999999988655 67899999999998 789999999999996554 99999999999999
Q ss_pred CcCccCCCccCcCCCCCCEEEccCCcCCCCCCh--------------------hhcCCCCCcEEEeeccccccccCCCCC
Q 017800 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPN--------------------WLEILPELQVLILRSNRFWGPIGENTT 132 (365)
Q Consensus 73 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~--------------------~l~~l~~L~~L~L~~N~l~~~~~~~~~ 132 (365)
|++++. +. +.++++|++|++++|.+++ ++. .+..+++|+.|++++|.+.+. + .+
T Consensus 122 n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-~l- 195 (466)
T 1o6v_A 122 NQITDI-DP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-S-VL- 195 (466)
T ss_dssp SCCCCC-GG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-G-GG-
T ss_pred CCCCCC-hH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-h-hh-
Confidence 999964 43 8999999999999999876 332 256778899999999998653 2 23
Q ss_pred ccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccch-hhhhhheeeEE
Q 017800 133 IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM-ERILTIFMTID 211 (365)
Q Consensus 133 ~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~ 211 (365)
..+++|+.|++++|.+++..| ++.++.|+.++........+........+..+.+..+.+.... +..+++|+.|+
T Consensus 196 -~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 271 (466)
T 1o6v_A 196 -AKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 271 (466)
T ss_dssp -GGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred -ccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEE
Confidence 789999999999999998766 4556666666553322222222222233444554444333211 33466777777
Q ss_pred cCCCccccCCChhhhcccccccccCcCCCcc------------EEECccCccccCCC
Q 017800 212 LSSNKFQGGIPEVVGKLNLLKGLNISHNNLT------------VLNLSYNQFEGPIP 256 (365)
Q Consensus 212 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~------------~L~ls~N~l~g~~p 256 (365)
+++|.+++..+ ++.+++|+.|++++|+++ .|++++|++++..|
T Consensus 272 l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 272 LGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG
T ss_pred CCCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh
Confidence 77777774433 666777777777777544 66666666665544
No 63
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=2e-23 Score=184.23 Aligned_cols=179 Identities=21% Similarity=0.215 Sum_probs=151.0
Q ss_pred CcccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCC
Q 017800 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 86 (365)
.+.+.++++++.++.++..-.+ .++.|+|++|.+++..+..|..+++|++|+|++|++++..|..|.++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~~-----------~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 82 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIPA-----------DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL 82 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCCT-----------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred CCCeEEecCCCCccccCCCCCC-----------CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccC
Confidence 3578899999999876553333 34778999999998888899999999999999999998888889999
Q ss_pred CCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcc
Q 017800 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (365)
Q Consensus 87 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~ 166 (365)
++|++|++++|++++..+..|..+++|++|++++|++++..+..+ ..+++|+.|++++|.+++..+.. +..
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~------ 153 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTNQLQSIPAGA-FDK------ 153 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT-TTT------
T ss_pred CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHh--ccCCcccEEECcCCcCCccCHHH-cCc------
Confidence 999999999999999877889999999999999999987666555 78999999999999998765533 332
Q ss_pred cCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
+++|++|+|++|++++..+..+..+++|+.|+|++|.++
T Consensus 154 -------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 154 -------------------------------------LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp -------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred -------------------------------------CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 467889999999999888888999998887666665553
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=4.9e-25 Score=212.93 Aligned_cols=195 Identities=21% Similarity=0.153 Sum_probs=119.1
Q ss_pred CCcccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcC
Q 017800 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN 85 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 85 (365)
+++|++|+|++|.+++..|..+..+. +|++|+|++|.+++.+| ++.+++|++|+|++|.+++.. .
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~--------~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~ 97 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFT--------KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----V 97 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCT--------TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----E
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCC--------CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----C
Confidence 45899999999999988763333332 23566666666665444 666666666666666666322 1
Q ss_pred CCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhc
Q 017800 86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165 (365)
Q Consensus 86 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~ 165 (365)
.++|++|++++|.+++..+. .+++|+.|++++|.+++..|..+ ..+++|+.|++++|.+++..|..+...++.|.
T Consensus 98 ~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 25666666666666653332 34566666666666666555544 55666666666666666665555333455554
Q ss_pred ccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
.+++.... +.. . +.. ..+++|+.|+|++|.|++..| .++.+++|+.|+|++|+|+
T Consensus 173 ~L~Ls~N~---l~~---------~-------~~~--~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 173 HLNLQYNF---IYD---------V-------KGQ--VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp EEECTTSC---CCE---------E-------ECC--CCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC
T ss_pred EEecCCCc---ccc---------c-------ccc--ccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc
Confidence 44431111 000 0 000 015788899999999996544 5888888888777777665
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=5.6e-23 Score=196.76 Aligned_cols=145 Identities=26% Similarity=0.281 Sum_probs=108.1
Q ss_pred CcccEEEccCCCCCCcCCCCCCCCcEEECCCC---------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCcc
Q 017800 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG 77 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 77 (365)
++|++|++++|.+++ +|..+++|++|++++| ++|++|++++|++++ +| .|+.+++|++|++++|++++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC
T ss_pred CCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc
Confidence 568888888888887 4445678889998888 478999999999985 77 58889999999999999885
Q ss_pred CCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhh
Q 017800 78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY 157 (365)
Q Consensus 78 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~ 157 (365)
+|..+ .+|++|++++|++++ +| .++.+++|++|++++|++++ +|.. .++|+.|++++|.++ .+| +
T Consensus 168 -lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-----~~~L~~L~l~~n~l~-~lp-~- 232 (454)
T 1jl5_A 168 -LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-----PLSLESIVAGNNILE-ELP-E- 232 (454)
T ss_dssp -CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC-----CTTCCEEECCSSCCS-SCC-C-
T ss_pred -cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC-----cCcccEEECcCCcCC-ccc-c-
Confidence 56543 588888888888887 56 57888888888888888765 3332 246777777777776 344 2
Q ss_pred hhhhhhhcccCC
Q 017800 158 LDNFKAMMHGNN 169 (365)
Q Consensus 158 ~~~l~~L~~l~~ 169 (365)
++.++.|+.++.
T Consensus 233 ~~~l~~L~~L~l 244 (454)
T 1jl5_A 233 LQNLPFLTTIYA 244 (454)
T ss_dssp CTTCTTCCEEEC
T ss_pred cCCCCCCCEEEC
Confidence 555666655544
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=5.5e-24 Score=190.16 Aligned_cols=139 Identities=22% Similarity=0.169 Sum_probs=115.8
Q ss_pred cCCcccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCc
Q 017800 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 84 (365)
.+++|++|++++|.+++... +...++|++|++++|.+++..+..|..+++|++|++++|++++..+..+.
T Consensus 61 ~l~~L~~L~l~~n~l~~~~~----------l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 130 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDISA----------LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD 130 (272)
T ss_dssp GCTTCCEEECTTSCCCCCGG----------GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cCCCCcEEECCCCCCCCchh----------hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc
Confidence 67899999999999987532 22234558888899999877777889999999999999999977777788
Q ss_pred CCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccch
Q 017800 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT 155 (365)
Q Consensus 85 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~ 155 (365)
++++|++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++|+.|++++|.+++..+.
T Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~ 199 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF--DKLTQLKDLRLYQNQLKSVPDG 199 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHh--cCCccCCEEECCCCcCCccCHH
Confidence 99999999999999998777778889999999999999987666555 7889999999999999876553
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=2.9e-24 Score=196.28 Aligned_cols=192 Identities=20% Similarity=0.165 Sum_probs=105.6
Q ss_pred CCcccEEEccCCCCCCcCC---CCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCcc
Q 017800 6 IATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPS 82 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 82 (365)
+++|++|++++|.+++..+ ..+++| ++|+|++|.+++..| +..+++|++|++++|++++. +
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L-----------~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~-- 96 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKL-----------ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L-- 96 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTC-----------CEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E--
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcC-----------CEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c--
Confidence 4578888888888887765 444455 555555555554333 55566666666666665532 1
Q ss_pred CcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhh
Q 017800 83 LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK 162 (365)
Q Consensus 83 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~ 162 (365)
..++|++|++++|++++..+. .+++|++|++++|++++..+..+ ..+++|+.|++++|.+++..+..+...++
T Consensus 97 --~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 97 --VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp --ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred --CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccHHHHhhccC
Confidence 225566666666666553222 24556666666666655444433 45556666666666665554444333444
Q ss_pred hhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 163 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
.|+.+++.......+ +... .+++|+.|+|++|++++ +|..+..+++|+.|+|++|+|+
T Consensus 170 ~L~~L~L~~N~l~~~-------------------~~~~--~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 170 TLEHLNLQYNFIYDV-------------------KGQV--VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp TCCEEECTTSCCCEE-------------------ECCC--CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC
T ss_pred cCCEEECCCCcCccc-------------------cccc--ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc
Confidence 444433311100000 0000 14667777888887774 3444777777777777777665
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=9.6e-23 Score=181.87 Aligned_cols=179 Identities=23% Similarity=0.219 Sum_probs=114.6
Q ss_pred CcccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCC
Q 017800 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 86 (365)
++++.|++++|+++++.+..+.++.. |++|++++|.++...+..|..+++|++|++++|++++..+..+.++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~--------L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 108 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTK--------LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQL 108 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTT--------CCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCC--------CCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccc
Confidence 35777777777777665544443333 3666777777775555556677777777777777776555666777
Q ss_pred CCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcc
Q 017800 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (365)
Q Consensus 87 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~ 166 (365)
++|++|++++|++++..+..|..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..+.. +..
T Consensus 109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~-~~~------ 179 (270)
T 2o6q_A 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF--DKLTSLKELRLYNNQLKRVPEGA-FDK------ 179 (270)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTTT-TTT------
T ss_pred cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHc--cCCcccceeEecCCcCcEeChhH-hcc------
Confidence 777777777777777666666777777777777777765444434 66777777777777776543322 221
Q ss_pred cCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCC
Q 017800 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239 (365)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 239 (365)
+++|+.|+|++|++++..+..+..+++|+.|+|++|
T Consensus 180 -------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 180 -------------------------------------LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp -------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred -------------------------------------CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 345667777777777555555666666664444433
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=5e-23 Score=185.64 Aligned_cols=117 Identities=22% Similarity=0.278 Sum_probs=68.6
Q ss_pred CCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEee
Q 017800 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (365)
Q Consensus 40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 119 (365)
+++.+++++|.++ .+|..+. ++++.|+|++|++++..|..|.++++|++|++++|.+++. +.. ..+++|++|+++
T Consensus 11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECC
T ss_pred CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECC
Confidence 3466666666666 4444443 4666666666666665566666666666666666666653 222 556666666666
Q ss_pred ccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhc
Q 017800 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165 (365)
Q Consensus 120 ~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~ 165 (365)
+|+++ .+|..+ ..+++|+.|++++|.+++..+.. +..+++|+
T Consensus 86 ~N~l~-~l~~~~--~~l~~L~~L~l~~N~l~~l~~~~-~~~l~~L~ 127 (290)
T 1p9a_G 86 HNQLQ-SLPLLG--QTLPALTVLDVSFNRLTSLPLGA-LRGLGELQ 127 (290)
T ss_dssp SSCCS-SCCCCT--TTCTTCCEEECCSSCCCCCCSST-TTTCTTCC
T ss_pred CCcCC-cCchhh--ccCCCCCEEECCCCcCcccCHHH-HcCCCCCC
Confidence 66664 344444 56666666666666666544332 44444333
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=9.9e-24 Score=192.12 Aligned_cols=204 Identities=19% Similarity=0.185 Sum_probs=151.6
Q ss_pred CCcEEECCCC----------------CCCCEEEccCCcCcccCCcCc--cCCCCcCEEEccCCcCccCCC----ccCcCC
Q 017800 29 NMTQLNFDSN----------------LTHKVLDMRMNNFNGKIPRKF--VKSCNLTSLNLNGNRLEGPLP----PSLVNC 86 (365)
Q Consensus 29 ~L~~L~ls~N----------------~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~l~~l 86 (365)
.++.+.+.++ ++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4567777765 569999999999998888888 889999999999999987655 345678
Q ss_pred CCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccc--cCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhh
Q 017800 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP--IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (365)
Q Consensus 87 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L 164 (365)
++|++|++++|++++..|..+..+++|++|++++|++.+. ++....+..+++|++|++++|.++...+ . ...
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~-~~~---- 218 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-V-CAA---- 218 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-H-HHH----
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-H-HHH----
Confidence 8999999999999887788888999999999999987653 2222223678899999999998864321 1 000
Q ss_pred cccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcc---cccccccCcCCCc
Q 017800 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL---NLLKGLNISHNNL 241 (365)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~L 241 (365)
.+..+++|++|||++|++++.+|..++.+ ++|++|+|++|+|
T Consensus 219 -----------------------------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 219 -----------------------------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp -----------------------------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC
T ss_pred -----------------------------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC
Confidence 01124667788888888887777777766 5888888888876
Q ss_pred c-----------EEECccCccccCCCCCCCCCCCCCCccCCCCC
Q 017800 242 T-----------VLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSG 274 (365)
Q Consensus 242 ~-----------~L~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~ 274 (365)
+ .||+++|++++. |....+..+....+.+|+.
T Consensus 264 ~~lp~~~~~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 264 EQVPKGLPAKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CSCCSCCCSCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTT
T ss_pred CchhhhhcCCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCC
Confidence 6 788888988863 4334555666666667654
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=7.4e-24 Score=204.65 Aligned_cols=186 Identities=19% Similarity=0.165 Sum_probs=159.5
Q ss_pred ccCCcccEEEccCCCCCCcCC-CCCCCCcEEECCCC--------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCc
Q 017800 4 LGIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN--------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (365)
Q Consensus 4 ~~l~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~ls~N--------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 74 (365)
.++++|++|+|++|.+++.+| ..+++|++|++++| ++|++|++++|.+++..+. .+++|+.|+|++|.
T Consensus 55 ~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~ 131 (487)
T 3oja_A 55 APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNK 131 (487)
T ss_dssp TTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSC
T ss_pred hCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCC
Confidence 378999999999999998877 78899999999999 7999999999999976654 35789999999999
Q ss_pred CccCCCccCcCCCCCCEEEccCCcCCCCCChhhc-CCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCcc
Q 017800 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE-ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153 (365)
Q Consensus 75 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~ 153 (365)
+++..|..++++++|++|++++|.+++..|..+. .+++|++|+|++|.+++..+. ..+++|+.|++++|.+++..
T Consensus 132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~----~~l~~L~~L~Ls~N~l~~~~ 207 (487)
T 3oja_A 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDLSSNKLAFMG 207 (487)
T ss_dssp CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----CCCTTCCEEECCSSCCCEEC
T ss_pred CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc----ccCCCCCEEECCCCCCCCCC
Confidence 9998888999999999999999999998888886 799999999999999876432 45899999999999999754
Q ss_pred chhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhccccccc
Q 017800 154 LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG 233 (365)
Q Consensus 154 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 233 (365)
| . +.. +++|+.|+|++|.|++ +|..++.+++|+.
T Consensus 208 ~-~-~~~-------------------------------------------l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~ 241 (487)
T 3oja_A 208 P-E-FQS-------------------------------------------AAGVTWISLRNNKLVL-IEKALRFSQNLEH 241 (487)
T ss_dssp G-G-GGG-------------------------------------------GTTCSEEECTTSCCCE-ECTTCCCCTTCCE
T ss_pred H-h-HcC-------------------------------------------CCCccEEEecCCcCcc-cchhhccCCCCCE
Confidence 4 2 332 4677889999999995 7778888888887
Q ss_pred ccCcCCCcc
Q 017800 234 LNISHNNLT 242 (365)
Q Consensus 234 L~Ls~N~L~ 242 (365)
|++++|.++
T Consensus 242 L~l~~N~l~ 250 (487)
T 3oja_A 242 FDLRGNGFH 250 (487)
T ss_dssp EECTTCCBC
T ss_pred EEcCCCCCc
Confidence 777666654
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=1.1e-23 Score=192.41 Aligned_cols=185 Identities=19% Similarity=0.168 Sum_probs=155.5
Q ss_pred cCCcccEEEccCCCCCCcCC-CCCCCCcEEECCCC--------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcC
Q 017800 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN--------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRL 75 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~ls~N--------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 75 (365)
++++|++|++++|.+++..+ ..+++|++|++++| ++|++|++++|.+++..+.. +++|++|++++|++
T Consensus 56 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l 132 (317)
T 3o53_A 56 PFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKI 132 (317)
T ss_dssp TCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCC
T ss_pred CCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCC
Confidence 68999999999999998877 88899999999999 79999999999999765544 57899999999999
Q ss_pred ccCCCccCcCCCCCCEEEccCCcCCCCCChhhc-CCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccc
Q 017800 76 EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE-ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (365)
Q Consensus 76 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~ 154 (365)
++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++..+. ..+++|++|++++|.+++..+
T Consensus 133 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~l~~L~~L~Ls~N~l~~l~~ 208 (317)
T 3o53_A 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDLSSNKLAFMGP 208 (317)
T ss_dssp CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----CCCTTCCEEECCSSCCCEECG
T ss_pred CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc----cccccCCEEECCCCcCCcchh
Confidence 988888999999999999999999997777764 789999999999999766322 358999999999999986543
Q ss_pred hhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccc
Q 017800 155 TGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL 234 (365)
Q Consensus 155 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 234 (365)
. +.. +++|+.|+|++|+++ .+|..+..+++|+.|
T Consensus 209 -~-~~~-------------------------------------------l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 209 -E-FQS-------------------------------------------AAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242 (317)
T ss_dssp -G-GGG-------------------------------------------GTTCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred -h-hcc-------------------------------------------cCcccEEECcCCccc-chhhHhhcCCCCCEE
Confidence 3 333 456778888888888 567778888888877
Q ss_pred cCcCCCcc
Q 017800 235 NISHNNLT 242 (365)
Q Consensus 235 ~Ls~N~L~ 242 (365)
++++|.++
T Consensus 243 ~l~~N~~~ 250 (317)
T 3o53_A 243 DLRGNGFH 250 (317)
T ss_dssp ECTTCCCB
T ss_pred EccCCCcc
Confidence 77777765
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=5.8e-23 Score=179.91 Aligned_cols=178 Identities=17% Similarity=0.143 Sum_probs=99.4
Q ss_pred cccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCc-CcccCCcCccCCCCcCEEEccC-CcCccCCCccCcC
Q 017800 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNN-FNGKIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLVN 85 (365)
Q Consensus 8 ~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~ 85 (365)
+|++|++++|+++++.+..+.++. +|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~--------~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~ 103 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLP--------NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCT--------TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred cccEEEEeCCcceEECHHHccCCC--------CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence 455555555555544443332222 22555555554 5544444555555555555555 5555444445555
Q ss_pred CCCCCEEEccCCcCCCCCChhhcCCCCCc---EEEeecc-ccccccCCCCCccCCCCcc-EEEcCCCcccCccchhhhhh
Q 017800 86 CHHLEVLNVGNNQINDNFPNWLEILPELQ---VLILRSN-RFWGPIGENTTIVPFPSLR-IIDLSHNEFTGVLLTGYLDN 160 (365)
Q Consensus 86 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~---~L~L~~N-~l~~~~~~~~~~~~l~~L~-~L~ls~N~l~~~~~~~~~~~ 160 (365)
+++|++|++++|++++ +|. +..+++|+ +|++++| .+++..+..+ ..+++|+ .|++++|.++ .+|..
T Consensus 104 l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n~l~-~i~~~---- 174 (239)
T 2xwt_C 104 LPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFT-SVQGY---- 174 (239)
T ss_dssp CTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCSCCCC-EECTT----
T ss_pred CCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCCCCCc-ccCHh----
Confidence 5555555555555555 443 55555555 5555555 5544333333 4555555 5555555555 22222
Q ss_pred hhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCc-cccCCChhhhcc-cccccccCcC
Q 017800 161 FKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK-FQGGIPEVVGKL-NLLKGLNISH 238 (365)
Q Consensus 161 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~ 238 (365)
.+. .++|+.|++++|+ +++..+..|+.+ ++|+.|++++
T Consensus 175 ---------------------------------------~~~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 175 ---------------------------------------AFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp ---------------------------------------TTT-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred ---------------------------------------hcC-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 111 2568899999995 987777888888 8888766666
Q ss_pred CCcc
Q 017800 239 NNLT 242 (365)
Q Consensus 239 N~L~ 242 (365)
|+|+
T Consensus 215 N~l~ 218 (239)
T 2xwt_C 215 TSVT 218 (239)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 6554
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.6e-23 Score=190.73 Aligned_cols=186 Identities=18% Similarity=0.154 Sum_probs=109.3
Q ss_pred cCCcccEEEccCCCCCCcCCCC-----CCCCcEEECCCC-----------------CCCCEEEccCCcCcccCCcCccCC
Q 017800 5 GIATLYYLDLSNNFLTNIEYFP-----PTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKFVKS 62 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~~~-----~~~L~~L~ls~N-----------------~~L~~L~Ls~N~l~~~~p~~~~~l 62 (365)
.+++|++|++++|.+++..|.. +++|++|++++| ++|++|+|++|.+++..|..|+.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 3467999999999999888733 455666666555 255666666666655555556666
Q ss_pred CCcCEEEccCCcCccC--C--CccCcCCCCCCEEEccCCcCCCCCCh----hhcCCCCCcEEEeeccccccccCCCCCcc
Q 017800 63 CNLTSLNLNGNRLEGP--L--PPSLVNCHHLEVLNVGNNQINDNFPN----WLEILPELQVLILRSNRFWGPIGENTTIV 134 (365)
Q Consensus 63 ~~L~~L~L~~N~l~~~--~--p~~l~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~~~~~~~~~ 134 (365)
++|++|+|++|++.+. + +..+..+++|++|++++|+++. ++. .+..+++|++|++++|++++..|..+ .
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~--~ 245 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA--P 245 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC--S
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhH--H
Confidence 6666666666655431 1 1223455566666666666543 222 13455566666666666655544433 2
Q ss_pred CC---CCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEE
Q 017800 135 PF---PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTID 211 (365)
Q Consensus 135 ~l---~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 211 (365)
.+ ++|+.|++++|.++ .+|..+ .++|+.||
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~-~lp~~~----------------------------------------------~~~L~~L~ 278 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLE-QVPKGL----------------------------------------------PAKLRVLD 278 (310)
T ss_dssp SCCCCTTCCCEECCSSCCC-SCCSCC----------------------------------------------CSCCSCEE
T ss_pred hccCcCcCCEEECCCCCCC-chhhhh----------------------------------------------cCCCCEEE
Confidence 22 46666666666655 223221 24567788
Q ss_pred cCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 212 LSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 212 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
|++|+|++. |. +..+++|+.|+|++|+|+
T Consensus 279 Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 279 LSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 888888853 33 566777777777777664
No 75
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=6.1e-22 Score=189.54 Aligned_cols=224 Identities=22% Similarity=0.295 Sum_probs=99.9
Q ss_pred cccEEEccCCCCCCcCC-CCCCCCcEEECCCC---------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCcc
Q 017800 8 TLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG 77 (365)
Q Consensus 8 ~L~~L~Ls~N~l~~~~~-~~~~~L~~L~ls~N---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 77 (365)
+|++|++++|++++++. ..+++|++|++++| .+|++|++++|.+++ +| .++.+++|++|++++|++++
T Consensus 132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 44444444444444221 33444444444444 244444444444443 33 34444555555555554442
Q ss_pred CCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhh
Q 017800 78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY 157 (365)
Q Consensus 78 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~ 157 (365)
+|... ++|++|++++|.++. +|. ++.+++|++|++++|++++ +|. .+++|+.|++++|.+++ +|..
T Consensus 210 -l~~~~---~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~l~~N~l~~-l~~~- 275 (454)
T 1jl5_A 210 -LPDLP---LSLESIVAGNNILEE-LPE-LQNLPFLTTIYADNNLLKT-LPD-----LPPSLEALNVRDNYLTD-LPEL- 275 (454)
T ss_dssp -CCCCC---TTCCEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCSS-CCS-----CCTTCCEEECCSSCCSC-CCCC-
T ss_pred -CCCCc---CcccEEECcCCcCCc-ccc-cCCCCCCCEEECCCCcCCc-ccc-----cccccCEEECCCCcccc-cCcc-
Confidence 22211 344555555555442 332 4445555555555555433 221 12445555555555443 2211
Q ss_pred hhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCc
Q 017800 158 LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237 (365)
Q Consensus 158 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 237 (365)
. +.|+.++........+... ...+..+.+..+.+.. +....++|+.|++++|++++ +|.. +++|++|+++
T Consensus 276 ~---~~L~~L~ls~N~l~~l~~~--~~~L~~L~l~~N~l~~-i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~ 345 (454)
T 1jl5_A 276 P---QSLTFLDVSENIFSGLSEL--PPNLYYLNASSNEIRS-LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIAS 345 (454)
T ss_dssp C---TTCCEEECCSSCCSEESCC--CTTCCEEECCSSCCSE-ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred c---CcCCEEECcCCccCcccCc--CCcCCEEECcCCcCCc-ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECC
Confidence 1 2222222211111011011 1122333333332221 11112467777777777774 5543 4677777777
Q ss_pred CCCcc----------EEECccCcccc--CCCC
Q 017800 238 HNNLT----------VLNLSYNQFEG--PIPR 257 (365)
Q Consensus 238 ~N~L~----------~L~ls~N~l~g--~~p~ 257 (365)
+|+++ .|++++|++++ .+|.
T Consensus 346 ~N~l~~lp~~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 346 FNHLAEVPELPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp SSCCSCCCCCCTTCCEEECCSSCCSSCCCCCT
T ss_pred CCccccccchhhhccEEECCCCCCCcCCCChH
Confidence 77654 67777777776 5554
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=9.6e-23 Score=179.90 Aligned_cols=168 Identities=22% Similarity=0.223 Sum_probs=144.7
Q ss_pred CCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEee
Q 017800 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (365)
Q Consensus 40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 119 (365)
..+.++++++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4578999999998 6776665 689999999999998888899999999999999999999888889999999999999
Q ss_pred ccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccc
Q 017800 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK 199 (365)
Q Consensus 120 ~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (365)
+|++++..+..+ ..+++|++|++++|.+++..+.. +..
T Consensus 92 ~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~~--------------------------------------- 129 (251)
T 3m19_A 92 NNQLASLPLGVF--DHLTQLDKLYLGGNQLKSLPSGV-FDR--------------------------------------- 129 (251)
T ss_dssp TSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT-TTT---------------------------------------
T ss_pred CCcccccChhHh--cccCCCCEEEcCCCcCCCcChhH-hcc---------------------------------------
Confidence 999987666666 88999999999999998654432 222
Q ss_pred hhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc--------------EEECccCccccCCC
Q 017800 200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT--------------VLNLSYNQFEGPIP 256 (365)
Q Consensus 200 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~--------------~L~ls~N~l~g~~p 256 (365)
+++|+.|+|++|+|++..+..++.+++|++|+|++|+|+ .|++++|++++..+
T Consensus 130 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 130 ----LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp ----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred ----CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 467889999999999887778999999999999999876 78888888876533
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=2.9e-22 Score=182.22 Aligned_cols=191 Identities=19% Similarity=0.252 Sum_probs=101.9
Q ss_pred cCCcccEEEccCCCCCCcCC-CCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccC
Q 017800 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 83 (365)
++++|++|++++|.++.... ..+++| ++|++++|.+++..+ +..+++|++|++++|++++ ++ .+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L-----------~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~ 103 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNL-----------IGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AI 103 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTC-----------CEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GG
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCC-----------CEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hh
Confidence 46788999999998877543 334444 555555555553322 5555666666666666553 22 45
Q ss_pred cCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhh
Q 017800 84 VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163 (365)
Q Consensus 84 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~ 163 (365)
..+++|++|++++|++++ ++. +..+++|++|++++|.+++..+ + ..+++|+.|++++|.+++..+ +..++.
T Consensus 104 ~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l--~~l~~L~~L~l~~n~l~~~~~---l~~l~~ 174 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--L--AGLTNLQYLSIGNAQVSDLTP---LANLSK 174 (308)
T ss_dssp TTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--G--GGCTTCCEEECCSSCCCCCGG---GTTCTT
T ss_pred cCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--c--cCCCCccEEEccCCcCCCChh---hcCCCC
Confidence 555666666666666655 222 5555666666666665544322 2 455566666666665554322 233222
Q ss_pred hcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 164 MMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 164 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
|+.+++... .+. ++. ....+++|++|+|++|++++..| +..+++|+.|+|++|+++
T Consensus 175 L~~L~l~~n---~l~----------------~~~--~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 175 LTTLKADDN---KIS----------------DIS--PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCEEECCSS---CCC----------------CCG--GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred CCEEECCCC---ccC----------------cCh--hhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 222221000 000 000 01125567777777777774432 666777776666666554
No 78
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.3e-21 Score=167.67 Aligned_cols=175 Identities=21% Similarity=0.184 Sum_probs=138.5
Q ss_pred cEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCC
Q 017800 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL 89 (365)
Q Consensus 10 ~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 89 (365)
+.++.+++.++.++....+ +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|
T Consensus 10 ~~v~c~~~~l~~~p~~~~~-----------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 78 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPA-----------QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78 (208)
T ss_dssp TEEECCSSCCSSCCSCCCT-----------TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEecCCCccCCCCCCCC-----------CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCc
Confidence 5788888888776543333 34777889999997777778999999999999999997767778999999
Q ss_pred CEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCC
Q 017800 90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN 169 (365)
Q Consensus 90 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~ 169 (365)
++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++|+.|++++|.+++..+.. +..
T Consensus 79 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~~-~~~--------- 146 (208)
T 2o6s_A 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF--DKLTQLKDLRLYQNQLKSVPDGV-FDR--------- 146 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTTT-TTT---------
T ss_pred CEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHh--ccCCcCCEEECCCCccceeCHHH-hcc---------
Confidence 999999999998777778999999999999999987666555 78999999999999998654422 322
Q ss_pred CcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCccEEECccC
Q 017800 170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTVLNLSYN 249 (365)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~~L~ls~N 249 (365)
+++|+.|++++|.+.+.. +.|+. |+++.|
T Consensus 147 ----------------------------------l~~L~~L~l~~N~~~~~~-------~~l~~----------L~~~~n 175 (208)
T 2o6s_A 147 ----------------------------------LTSLQYIWLHDNPWDCTC-------PGIRY----------LSEWIN 175 (208)
T ss_dssp ----------------------------------CTTCCEEECCSCCBCCCT-------TTTHH----------HHHHHH
T ss_pred ----------------------------------CCCccEEEecCCCeecCC-------CCHHH----------HHHHHH
Confidence 456788999999887543 34454 456677
Q ss_pred ccccCCCCC
Q 017800 250 QFEGPIPRG 258 (365)
Q Consensus 250 ~l~g~~p~~ 258 (365)
+++|.+|..
T Consensus 176 ~~~g~ip~~ 184 (208)
T 2o6s_A 176 KHSGVVRNS 184 (208)
T ss_dssp HCTTTBBCT
T ss_pred hCCceeecc
Confidence 778888864
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=6.2e-23 Score=188.69 Aligned_cols=227 Identities=16% Similarity=0.144 Sum_probs=135.9
Q ss_pred ccEEEccCCCCCCcCCCCC--CCCcEEECCCC------------CCCCEEEccCCcCccc-CCcCccCCCCcCEEEccCC
Q 017800 9 LYYLDLSNNFLTNIEYFPP--TNMTQLNFDSN------------LTHKVLDMRMNNFNGK-IPRKFVKSCNLTSLNLNGN 73 (365)
Q Consensus 9 L~~L~Ls~N~l~~~~~~~~--~~L~~L~ls~N------------~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N 73 (365)
++.+|+++|.+.......+ ++++.|++++| ++|++|++++|.+++. +|..+..+++|++|++++|
T Consensus 49 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~ 128 (336)
T 2ast_B 49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 128 (336)
T ss_dssp SSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred heeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc
Confidence 4555555555542111222 45555555554 4667777777777654 6666777777777777777
Q ss_pred cCccCCCccCcCCCCCCEEEccCC-cCCCC-CChhhcCCCCCcEEEeecc-ccccc-cCCCCCccCCC-CccEEEcCCC-
Q 017800 74 RLEGPLPPSLVNCHHLEVLNVGNN-QINDN-FPNWLEILPELQVLILRSN-RFWGP-IGENTTIVPFP-SLRIIDLSHN- 147 (365)
Q Consensus 74 ~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~-~~~~~~~~~l~-~L~~L~ls~N- 147 (365)
.+++..|..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+ ..++ +|+.|++++|
T Consensus 129 ~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV--AHVSETITQLNLSGYR 206 (336)
T ss_dssp BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH--HHSCTTCCEEECCSCG
T ss_pred ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH--HhcccCCCEEEeCCCc
Confidence 777666677777777777777777 56642 5555667777777777777 66543 33323 5667 7777777777
Q ss_pred -ccc-CccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCc-cccCCChh
Q 017800 148 -EFT-GVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK-FQGGIPEV 224 (365)
Q Consensus 148 -~l~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~ 224 (365)
.++ +.++. .+..+++|+.++...... + ..........+++|++|++++|. +.......
T Consensus 207 ~~~~~~~l~~-~~~~~~~L~~L~l~~~~~--l----------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 207 KNLQKSDLST-LVRRCPNLVHLDLSDSVM--L----------------KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp GGSCHHHHHH-HHHHCTTCSEEECTTCTT--C----------------CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred ccCCHHHHHH-HHhhCCCCCEEeCCCCCc--C----------------CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 344 22332 244555554443311000 0 00001112235778888888884 33222235
Q ss_pred hhcccccccccCcCCCcc------------EEECccCccccCCCC
Q 017800 225 VGKLNLLKGLNISHNNLT------------VLNLSYNQFEGPIPR 257 (365)
Q Consensus 225 l~~l~~L~~L~Ls~N~L~------------~L~ls~N~l~g~~p~ 257 (365)
++.+++|+.|++++| ++ .|++++|++++..|.
T Consensus 268 l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCccccCC
Confidence 777888888888877 54 667777777776665
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=3.7e-22 Score=181.54 Aligned_cols=179 Identities=17% Similarity=0.202 Sum_probs=138.8
Q ss_pred CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEe
Q 017800 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 118 (365)
++|+.|++++|.++ .+| .+..+++|++|++++|++++. +. +..+++|++|++++|++++ ++ .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 45688899999988 455 688999999999999999954 44 9999999999999999987 44 6899999999999
Q ss_pred eccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEecccc
Q 017800 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (365)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (365)
++|.+++..+ + ..+++|+.|++++|.+++..+ +..++.|+.+++... .+. .+..
T Consensus 115 ~~n~l~~~~~--l--~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n---~l~----------------~~~~ 168 (308)
T 1h6u_A 115 TSTQITDVTP--L--AGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNA---QVS----------------DLTP 168 (308)
T ss_dssp TTSCCCCCGG--G--TTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSS---CCC----------------CCGG
T ss_pred CCCCCCCchh--h--cCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCC---cCC----------------CChh
Confidence 9999976432 3 889999999999999997644 566666655544111 111 1111
Q ss_pred chhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc------------EEECccCcccc
Q 017800 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT------------VLNLSYNQFEG 253 (365)
Q Consensus 199 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~------------~L~ls~N~l~g 253 (365)
+..+++|+.|++++|++++..+ +..+++|++|+|++|+++ .|++++|++++
T Consensus 169 --l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 --LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred --hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence 3346788899999999885443 788888998888888765 77888888775
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=7.7e-21 Score=187.84 Aligned_cols=235 Identities=20% Similarity=0.186 Sum_probs=136.7
Q ss_pred cccEEEccCCCCCCcCCCCCCCCcEEECCCC---------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccC
Q 017800 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP 78 (365)
Q Consensus 8 ~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 78 (365)
+++.|++++|.++.++....++|+.|++++| ++|++|+|++|+++ .+|. .+++|++|++++|++++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~- 115 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH- 115 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-
Confidence 5778888888888655444578888888887 57888888888887 4554 56778888888888874
Q ss_pred CCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhh
Q 017800 79 LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL 158 (365)
Q Consensus 79 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~ 158 (365)
+|. .+++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|.+++. | .
T Consensus 116 l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~l~~l-~-~-- 178 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA-----LPSELCKLWAYNNQLTSL-P-M-- 178 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSCC-C-C--
T ss_pred CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC-----ccCCCCEEECCCCCCCCC-c-c--
Confidence 444 45777888888888776 4542 4777788888877754 332 234566666666666542 2 1
Q ss_pred hhhhhhcccCCCcccccccCCCCC-CCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCc
Q 017800 159 DNFKAMMHGNNISVEVDYMTPLNS-SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237 (365)
Q Consensus 159 ~~l~~L~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 237 (365)
.+++|+.+++... .+..++. ...+..+.+..+.+. .++..+++|+.|+|++|+|++ +| ..+++|+.|+|+
T Consensus 179 -~~~~L~~L~Ls~N---~l~~l~~~~~~L~~L~L~~N~l~-~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls 249 (622)
T 3g06_A 179 -LPSGLQELSVSDN---QLASLPTLPSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVS 249 (622)
T ss_dssp -CCTTCCEEECCSS---CCSCCCCCCTTCCEEECCSSCCS-SCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECC
T ss_pred -cCCCCcEEECCCC---CCCCCCCccchhhEEECcCCccc-ccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECC
Confidence 1222322222111 1111110 112222333222222 111224567777777777774 45 445677777777
Q ss_pred CCCcc----------EEECccCccccCCCCC-CCCCCCCCCccCCCCC
Q 017800 238 HNNLT----------VLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSG 274 (365)
Q Consensus 238 ~N~L~----------~L~ls~N~l~g~~p~~-~~~~~~~~~~~~~n~~ 274 (365)
+|+|+ .|++++|+|+ .+|.. ..+..+....+.+|+.
T Consensus 250 ~N~L~~lp~~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 250 GNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp SSCCSCCCCCCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCC
T ss_pred CCCCCcCCcccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCC
Confidence 77654 6777777777 44532 1233334444555543
No 82
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=7e-21 Score=186.03 Aligned_cols=175 Identities=25% Similarity=0.291 Sum_probs=128.0
Q ss_pred cccEEEccCCCCCCcCCCCCCCCcEEECCCC---------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccC
Q 017800 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP 78 (365)
Q Consensus 8 ~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 78 (365)
+|+.|++++|.++++++.-+++|++|++++| ++|++|+|++|+|++ +|. +.. +|++|+|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~- 134 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM- 134 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-
Confidence 8999999999999965555678888888877 578888888888875 666 554 78888888888875
Q ss_pred CCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhh
Q 017800 79 LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL 158 (365)
Q Consensus 79 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~ 158 (365)
+|. .+++|++|++++|++++ +|. .+++|++|++++|++++ +|. + . ++|+.|++++|.|+. +|. +.
T Consensus 135 lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l--~--~~L~~L~Ls~N~L~~-lp~-~~ 199 (571)
T 3cvr_A 135 LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L--P--ESLEALDVSTNLLES-LPA-VP 199 (571)
T ss_dssp CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C--C--TTCCEEECCSSCCSS-CCC-CC
T ss_pred CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h--h--CCCCEEECcCCCCCc-hhh-HH
Confidence 555 56788888888888877 554 56778888888888766 555 4 3 778888888888773 332 11
Q ss_pred hhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcC
Q 017800 159 DNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238 (365)
Q Consensus 159 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 238 (365)
. .| ......|+.|+|++|+|+ .+|..+..+++|+.|+|++
T Consensus 200 ~---~L------------------------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 200 V---RN------------------------------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239 (571)
T ss_dssp -----------------------------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCS
T ss_pred H---hh------------------------------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeC
Confidence 1 11 001344689999999999 6888888899998887777
Q ss_pred CCcc
Q 017800 239 NNLT 242 (365)
Q Consensus 239 N~L~ 242 (365)
|+|+
T Consensus 240 N~l~ 243 (571)
T 3cvr_A 240 NPLS 243 (571)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7765
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=4.1e-23 Score=193.79 Aligned_cols=144 Identities=17% Similarity=0.195 Sum_probs=99.2
Q ss_pred cCCcccEEEccCCCCCCcCC-------CCCCCCcEEECCCC-----------------------CCCCEEEccCCcCcc-
Q 017800 5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN-----------------------LTHKVLDMRMNNFNG- 53 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~-------~~~~~L~~L~ls~N-----------------------~~L~~L~Ls~N~l~~- 53 (365)
.+++|++|+|++|.++...+ ..+++|++|++++| ++|++|+|++|.+++
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 46789999999999887533 45778888887764 567778888777776
Q ss_pred ---cCCcCccCCCCcCEEEccCCcCccCCCccCc----CC---------CCCCEEEccCCcCC-CCCC---hhhcCCCCC
Q 017800 54 ---KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV----NC---------HHLEVLNVGNNQIN-DNFP---NWLEILPEL 113 (365)
Q Consensus 54 ---~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~----~l---------~~L~~L~L~~N~l~-~~~p---~~l~~l~~L 113 (365)
.+|..+..+++|++|+|++|.+++..+..+. .+ ++|++|++++|+++ +.+| ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 3666677777788888887777643333332 33 77778888877776 2234 355567777
Q ss_pred cEEEeeccccc--c---ccCCCCCccCCCCccEEEcCCCccc
Q 017800 114 QVLILRSNRFW--G---PIGENTTIVPFPSLRIIDLSHNEFT 150 (365)
Q Consensus 114 ~~L~L~~N~l~--~---~~~~~~~~~~l~~L~~L~ls~N~l~ 150 (365)
++|++++|.++ | ..+..+ ..+++|+.|++++|.++
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l--~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGL--AYCQELKVLDLQDNTFT 229 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTG--GGCTTCCEEECCSSCCH
T ss_pred CEEECcCCCCCHhHHHHHHHHHh--hcCCCccEEECcCCCCC
Confidence 88888777775 2 233233 66777778888777775
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=7e-21 Score=188.12 Aligned_cols=219 Identities=21% Similarity=0.266 Sum_probs=151.0
Q ss_pred CcccEEEccCCCCCCcCCCCCCCCcEEECCCC---------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCcc
Q 017800 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG 77 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 77 (365)
++|++|++++|.|+.+++ .+++|++|++++| ++|++|++++|++++ +|. .+++|+.|++++|++++
T Consensus 61 ~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~ 135 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS 135 (622)
T ss_dssp TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc
Confidence 679999999999986554 7789999999998 689999999999985 454 56789999999999884
Q ss_pred CCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhh
Q 017800 78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY 157 (365)
Q Consensus 78 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~ 157 (365)
+|.. +++|++|++++|++++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++. |..
T Consensus 136 -lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~-----~~~~~L~~L~Ls~N~l~~l-~~~- 199 (622)
T 3g06_A 136 -LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP-----MLPSGLQELSVSDNQLASL-PTL- 199 (622)
T ss_dssp -CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC-----CCCTTCCEEECCSSCCSCC-CCC-
T ss_pred -CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc-----ccCCCCcEEECCCCCCCCC-CCc-
Confidence 5653 4889999999999887 453 34678888888888764 44 2357788888888888763 322
Q ss_pred hhhhhhhcccCCCcccccccCCCCC-CCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccC
Q 017800 158 LDNFKAMMHGNNISVEVDYMTPLNS-SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI 236 (365)
Q Consensus 158 ~~~l~~L~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 236 (365)
..++..| .... +.+...+. ...+..+.++.+.+.. ++..+++|+.|+|++|+|+ .+|. .+++|+.|+|
T Consensus 200 ~~~L~~L---~L~~---N~l~~l~~~~~~L~~L~Ls~N~L~~-lp~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~L 268 (622)
T 3g06_A 200 PSELYKL---WAYN---NRLTSLPALPSGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLT-SLPM---LPSGLLSLSV 268 (622)
T ss_dssp CTTCCEE---ECCS---SCCSSCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred cchhhEE---ECcC---CcccccCCCCCCCCEEEccCCccCc-CCCCCCcCcEEECCCCCCC-cCCc---ccccCcEEeC
Confidence 3333332 2211 11111111 1234444444444332 2234577888888888887 4555 5677888888
Q ss_pred cCCCcc-------------EEECccCccccCCCC
Q 017800 237 SHNNLT-------------VLNLSYNQFEGPIPR 257 (365)
Q Consensus 237 s~N~L~-------------~L~ls~N~l~g~~p~ 257 (365)
++|+|+ .|++++|++++.+|.
T Consensus 269 s~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 269 YRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCCCCcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 888765 788888888877664
No 85
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=3.1e-21 Score=165.18 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=127.8
Q ss_pred CEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeecc
Q 017800 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (365)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 121 (365)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..+.++++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 57888888888 566544 468999999999999777777899999999999999999876777899999999999999
Q ss_pred ccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchh
Q 017800 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (365)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (365)
++++..+..+ ..+++|+.|++++|.+++..+.. +..
T Consensus 87 ~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~~----------------------------------------- 122 (208)
T 2o6s_A 87 QLQSLPNGVF--DKLTQLKELALNTNQLQSLPDGV-FDK----------------------------------------- 122 (208)
T ss_dssp CCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT-TTT-----------------------------------------
T ss_pred cCCccCHhHh--cCccCCCEEEcCCCcCcccCHhH-hcc-----------------------------------------
Confidence 9986665555 88999999999999998764432 222
Q ss_pred hhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCccEEECccCccccCCCC
Q 017800 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTVLNLSYNQFEGPIPR 257 (365)
Q Consensus 202 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~~L~ls~N~l~g~~p~ 257 (365)
+++|++|++++|++++..+..+..+++|++|+++ +|++.+..|.
T Consensus 123 --l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~----------~N~~~~~~~~ 166 (208)
T 2o6s_A 123 --LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH----------DNPWDCTCPG 166 (208)
T ss_dssp --CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC----------SCCBCCCTTT
T ss_pred --CCcCCEEECCCCccceeCHHHhccCCCccEEEec----------CCCeecCCCC
Confidence 5678899999999997777778888888866555 4555666664
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.2e-21 Score=168.81 Aligned_cols=165 Identities=17% Similarity=0.208 Sum_probs=134.5
Q ss_pred CCCEEEccCCcCcccCCcCccCCCCcCEEEccCCc-CccCCCccCcCCCCCCEEEccC-CcCCCCCChhhcCCCCCcEEE
Q 017800 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR-LEGPLPPSLVNCHHLEVLNVGN-NQINDNFPNWLEILPELQVLI 117 (365)
Q Consensus 40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~ 117 (365)
+|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45888999999998777799999999999999997 8877777899999999999999 999987778899999999999
Q ss_pred eeccccccccCCCCCccCCCCcc---EEEcCCC-cccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEE
Q 017800 118 LRSNRFWGPIGENTTIVPFPSLR---IIDLSHN-EFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTI 193 (365)
Q Consensus 118 L~~N~l~~~~~~~~~~~~l~~L~---~L~ls~N-~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (365)
+++|.+++ +|. + ..+++|+ .|++++| .+++..+.. +..
T Consensus 112 l~~n~l~~-lp~-~--~~l~~L~~L~~L~l~~N~~l~~i~~~~-~~~--------------------------------- 153 (239)
T 2xwt_C 112 IFNTGLKM-FPD-L--TKVYSTDIFFILEITDNPYMTSIPVNA-FQG--------------------------------- 153 (239)
T ss_dssp EEEECCCS-CCC-C--TTCCBCCSEEEEEEESCTTCCEECTTT-TTT---------------------------------
T ss_pred CCCCCCcc-ccc-c--ccccccccccEEECCCCcchhhcCccc-ccc---------------------------------
Confidence 99999976 565 4 7778887 9999999 887554332 332
Q ss_pred eccccchhhhhhhee-eEEcCCCccccCCChhhhcccccccccCcCCC-cc---------------EEECccCcccc
Q 017800 194 KGIDIKMERILTIFM-TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN-LT---------------VLNLSYNQFEG 253 (365)
Q Consensus 194 ~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-L~---------------~L~ls~N~l~g 253 (365)
+++|+ .|++++|+++ .+|......++|+.|+|++|+ ++ .||+++|++++
T Consensus 154 ----------l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 154 ----------LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp ----------TBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred ----------hhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 56778 9999999999 555544344889999999984 65 56777777763
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=9.2e-23 Score=189.77 Aligned_cols=222 Identities=17% Similarity=0.189 Sum_probs=135.3
Q ss_pred EEEccCCCCCCcCC---CCCCCCcEEECCCC-----------------C-CCCEEEccCCcCcccCCcCccCC-----CC
Q 017800 11 YLDLSNNFLTNIEY---FPPTNMTQLNFDSN-----------------L-THKVLDMRMNNFNGKIPRKFVKS-----CN 64 (365)
Q Consensus 11 ~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N-----------------~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~ 64 (365)
++++++|.+++.+| ...++|++|++++| + +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35666666666655 34445677777666 3 67777888887776666666654 77
Q ss_pred cCEEEccCCcCccCCCccC----cCC-CCCCEEEccCCcCCCCCChhhc----C-CCCCcEEEeeccccccccCCCC--C
Q 017800 65 LTSLNLNGNRLEGPLPPSL----VNC-HHLEVLNVGNNQINDNFPNWLE----I-LPELQVLILRSNRFWGPIGENT--T 132 (365)
Q Consensus 65 L~~L~L~~N~l~~~~p~~l----~~l-~~L~~L~L~~N~l~~~~p~~l~----~-l~~L~~L~L~~N~l~~~~~~~~--~ 132 (365)
|++|+|++|++++..+..+ ..+ ++|++|++++|++++..+..+. . .++|++|++++|.+++..+..+ .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 8888888888776555533 333 6788888888887775554443 2 3578888888887763222111 0
Q ss_pred ccCCC-CccEEEcCCCcccCccchhhhhhh----hhhcccCCCcccccccCCCCCCCccceEEEEEecccc--------c
Q 017800 133 IVPFP-SLRIIDLSHNEFTGVLLTGYLDNF----KAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI--------K 199 (365)
Q Consensus 133 ~~~l~-~L~~L~ls~N~l~~~~~~~~~~~l----~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 199 (365)
+..++ +|++|++++|.+++..+..+...+ +.|+.+++ +.+.+.. .
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L----------------------s~N~i~~~~~~~l~~~ 219 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL----------------------SANLLGLKSYAELAYI 219 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC----------------------TTSCGGGSCHHHHHHH
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEEC----------------------CCCCCChhHHHHHHHH
Confidence 12333 777888888877766554322111 23333322 1111111 1
Q ss_pred hhhhhhheeeEEcCCCccccCCChh----hhcccccccccCcCCC---------------------ccEEECccCccccC
Q 017800 200 MERILTIFMTIDLSSNKFQGGIPEV----VGKLNLLKGLNISHNN---------------------LTVLNLSYNQFEGP 254 (365)
Q Consensus 200 ~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~---------------------L~~L~ls~N~l~g~ 254 (365)
+....++|++|||++|.+++..+.. +..+++|+.|+|++|. |+.||+++|++.+.
T Consensus 220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 1111347888888888888765533 3556888888888886 22788888888755
No 88
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=1.1e-20 Score=175.71 Aligned_cols=179 Identities=25% Similarity=0.231 Sum_probs=147.9
Q ss_pred cEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCcc-CCCCcCEEEccCCcCccCCCccCcCCCC
Q 017800 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV-KSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (365)
Q Consensus 10 ~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 88 (365)
+.++++++.++.++..-.. .++.|+|++|+|++..+..|. .+++|++|+|++|+|++..+..|.++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~-----------~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~ 89 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPS-----------YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89 (361)
T ss_dssp TEEECCSSCCSSCCSSCCT-----------TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CEEEeCCCCcCccCccCCC-----------CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCC
Confidence 5788888888875432222 247789999999988888887 9999999999999999888888999999
Q ss_pred CCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccC
Q 017800 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN 168 (365)
Q Consensus 89 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~ 168 (365)
|++|+|++|++++..+..|..+++|++|+|++|++++..+..+ ..+++|+.|+|++|.+++..+ ..+..+.
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~-~~~~~~~------ 160 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQISRFPV-ELIKDGN------ 160 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCSCCG-GGTC---------
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCCeeCH-HHhcCcc------
Confidence 9999999999999777789999999999999999988777776 899999999999999987533 3222111
Q ss_pred CCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccc--cccccCcCCCcc
Q 017800 169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL--LKGLNISHNNLT 242 (365)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~L~ 242 (365)
.+++|+.|||++|+|++..+..+..++. ++.|+|++|.++
T Consensus 161 ----------------------------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 161 ----------------------------------KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -----------------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ----------------------------------cCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 1567899999999999777788888887 488888888876
No 89
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=1.9e-20 Score=161.77 Aligned_cols=107 Identities=21% Similarity=0.297 Sum_probs=52.5
Q ss_pred EEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccc
Q 017800 43 VLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR 122 (365)
Q Consensus 43 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 122 (365)
.++++++.++ .+|..+. ++|+.|++++|+|++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|+
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4445555544 3343332 345555555555554444445555555555555555555445555555555555555555
Q ss_pred cccccCCCCCccCCCCccEEEcCCCcccCccc
Q 017800 123 FWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (365)
Q Consensus 123 l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~ 154 (365)
+++..+..+ ..+++|+.|++++|.+++..|
T Consensus 92 l~~l~~~~f--~~l~~L~~L~L~~N~l~~~~~ 121 (220)
T 2v9t_B 92 ITELPKSLF--EGLFSLQLLLLNANKINCLRV 121 (220)
T ss_dssp CCCCCTTTT--TTCTTCCEEECCSSCCCCCCT
T ss_pred CCccCHhHc--cCCCCCCEEECCCCCCCEeCH
Confidence 543322222 445555555555555554433
No 90
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=5.6e-20 Score=182.73 Aligned_cols=242 Identities=17% Similarity=0.181 Sum_probs=131.0
Q ss_pred CCcccEEEccCCCCCCcCCCCCCCCcEEECCCC-----------CCCCEEEccCCcCc--ccCCcCccCCCCcCEEEccC
Q 017800 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-----------LTHKVLDMRMNNFN--GKIPRKFVKSCNLTSLNLNG 72 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N-----------~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~ 72 (365)
..+++.|++++|.+.+..+..+..|+.++++.| ++|++|++++|.+. +..+..+..+.+|+.+++..
T Consensus 327 ~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~ 406 (635)
T 4g8a_A 327 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSF 406 (635)
T ss_dssp CCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCS
T ss_pred chhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccc
Confidence 456778888888877766666666776666655 56777777777664 23444555566666666666
Q ss_pred CcCccCCCccCcCCCCCCEEEccCCcCCCCCC-hhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccC
Q 017800 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (365)
Q Consensus 73 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~ 151 (365)
|.+.. .+..+..+++|+.++++.|......+ ..+..+++++.++++.|.+.+..+..+ ..+++|+.|++++|.+.+
T Consensus 407 ~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~--~~~~~L~~L~Ls~N~~~~ 483 (635)
T 4g8a_A 407 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQE 483 (635)
T ss_dssp CSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGG
T ss_pred ccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc--ccchhhhhhhhhhccccc
Confidence 66553 34455566666666666655544333 234556666666666666655555444 556666666666665433
Q ss_pred ccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhccccc
Q 017800 152 VLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL 231 (365)
Q Consensus 152 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 231 (365)
.+++..+..++.|+.+++.... ..++.+..+..+++|++|+|++|+|++..|..|+.+++|
T Consensus 484 ~~~~~~~~~l~~L~~L~Ls~N~-------------------L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 484 NFLPDIFTELRNLTFLDLSQCQ-------------------LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544 (635)
T ss_dssp GEECSCCTTCTTCCEEECTTSC-------------------CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred ccCchhhhhccccCEEECCCCc-------------------cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence 2222223322222111110000 000000111113444555555555555555555555544
Q ss_pred ccccCcCCCccEEECccCccccCCCCCCC-C-CCCCCCccCCCCCCCCcC
Q 017800 232 KGLNISHNNLTVLNLSYNQFEGPIPRGSQ-F-NTFPNDSYVGNSGLCGFP 279 (365)
Q Consensus 232 ~~L~Ls~N~L~~L~ls~N~l~g~~p~~~~-~-~~~~~~~~~~n~~lc~~~ 279 (365)
+ +||+++|+|++..|.... + ..+......+||+.|.|.
T Consensus 545 ~----------~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 545 Q----------VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp C----------EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred C----------EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 4 566667777776665432 2 345566788898888764
No 91
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=6.1e-20 Score=158.62 Aligned_cols=145 Identities=19% Similarity=0.175 Sum_probs=120.3
Q ss_pred cEEEccCCCCCCcCCCCCCCCcEEECCCC--------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcC
Q 017800 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRL 75 (365)
Q Consensus 10 ~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N--------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 75 (365)
+.+++++|.++.++..-...+++|++++| ++|++|+|++|.+++..+..|..+++|++|+|++|++
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 57889999988765555556778888777 5788899999998877777888899999999999999
Q ss_pred ccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccch
Q 017800 76 EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT 155 (365)
Q Consensus 76 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~ 155 (365)
++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..|..+ ..+++|+.|++++|.+.+..+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEECSGGG
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcCCCch
Confidence 87777778888999999999999988778888888999999999999888777766 7888899999999988876553
Q ss_pred h
Q 017800 156 G 156 (365)
Q Consensus 156 ~ 156 (365)
.
T Consensus 172 ~ 172 (220)
T 2v70_A 172 A 172 (220)
T ss_dssp H
T ss_pred H
Confidence 3
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=4.8e-22 Score=184.89 Aligned_cols=193 Identities=21% Similarity=0.206 Sum_probs=139.6
Q ss_pred CCCCEEEccCCcCcccCC----cCccCCC-CcCEEEccCCcCccCCCccCcCC-----CCCCEEEccCCcCCCCCChhhc
Q 017800 39 LTHKVLDMRMNNFNGKIP----RKFVKSC-NLTSLNLNGNRLEGPLPPSLVNC-----HHLEVLNVGNNQINDNFPNWLE 108 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~p~~l~ 108 (365)
++|++|||++|.+++..+ ..|..++ +|++|+|++|++++..+..+..+ ++|++|++++|++++..+..+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 569999999999997776 7788888 99999999999998877777665 9999999999999987776544
Q ss_pred ----CC-CCCcEEEeeccccccccCCCC--CccC-CCCccEEEcCCCcccCccchhhhhhhh----hhcccCCCcccccc
Q 017800 109 ----IL-PELQVLILRSNRFWGPIGENT--TIVP-FPSLRIIDLSHNEFTGVLLTGYLDNFK----AMMHGNNISVEVDY 176 (365)
Q Consensus 109 ----~l-~~L~~L~L~~N~l~~~~~~~~--~~~~-l~~L~~L~ls~N~l~~~~~~~~~~~l~----~L~~l~~~~~~~~~ 176 (365)
.+ ++|++|++++|.+++..+..+ .+.. .++|++|++++|.+++..+..+...+. .|+.+++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L------- 174 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL------- 174 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC-------
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee-------
Confidence 44 899999999999976544332 0133 369999999999998654433222221 3333332
Q ss_pred cCCCCCCCccceEEEEEeccccc-------hhhhh-hheeeEEcCCCccccC----CChhhhc-ccccccccCcCCCcc-
Q 017800 177 MTPLNSSNYYESIILTIKGIDIK-------MERIL-TIFMTIDLSSNKFQGG----IPEVVGK-LNLLKGLNISHNNLT- 242 (365)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l-~~L~~L~Ls~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~L~- 242 (365)
..+.+... ....+ ++|++|||++|.|++. ++..+.. .++|++|+|++|+++
T Consensus 175 ---------------s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 175 ---------------RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp ---------------TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred ---------------cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 22222211 11113 5899999999999864 4555555 358999999999875
Q ss_pred -----------------EEECccCcccc
Q 017800 243 -----------------VLNLSYNQFEG 253 (365)
Q Consensus 243 -----------------~L~ls~N~l~g 253 (365)
.|++++|.+++
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~ 267 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKN 267 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTT
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccc
Confidence 78888888554
No 93
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=161.40 Aligned_cols=152 Identities=23% Similarity=0.222 Sum_probs=124.7
Q ss_pred CEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCC-ccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeec
Q 017800 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLP-PSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (365)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 120 (365)
+.+++++|.++ .+|..+. ..+++|+|++|++++..| ..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 57899999998 5776654 456899999999997755 4578999999999999999997777899999999999999
Q ss_pred cccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccch
Q 017800 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM 200 (365)
Q Consensus 121 N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (365)
|++++..+..+ ..+++|++|++++|.+++..|.. +..
T Consensus 91 N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~---------------------------------------- 127 (220)
T 2v70_A 91 NRLENVQHKMF--KGLESLKTLMLRSNRITCVGNDS-FIG---------------------------------------- 127 (220)
T ss_dssp SCCCCCCGGGG--TTCSSCCEEECTTSCCCCBCTTS-STT----------------------------------------
T ss_pred CccCccCHhHh--cCCcCCCEEECCCCcCCeECHhH-cCC----------------------------------------
Confidence 99987666655 78999999999999999876654 332
Q ss_pred hhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 201 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
+++|+.|+|++|+|++..|..|..+++|+.|+|++|.++
T Consensus 128 ---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 128 ---LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ---CTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ---CccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 466788999999999888999999988887666655543
No 94
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.3e-19 Score=157.44 Aligned_cols=104 Identities=21% Similarity=0.214 Sum_probs=58.7
Q ss_pred CEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeecc
Q 017800 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (365)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 121 (365)
+.++.+++.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+++...+..|..+++|++|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 44555555554 4444332 55666666666666555555666666666666666665544444555666666666666
Q ss_pred ccccccCCCCCccCCCCccEEEcCCCccc
Q 017800 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (365)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~ls~N~l~ 150 (365)
++++..+..+ ..+++|+.|++++|.++
T Consensus 99 ~l~~l~~~~~--~~l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 99 QLTVLPSAVF--DRLVHLKELFMCCNKLT 125 (229)
T ss_dssp CCCCCCTTTT--TTCTTCCEEECCSSCCC
T ss_pred cCCccChhHh--CcchhhCeEeccCCccc
Confidence 6654444333 55666666666666665
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=6e-21 Score=172.10 Aligned_cols=169 Identities=22% Similarity=0.256 Sum_probs=116.4
Q ss_pred CCcccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcC
Q 017800 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN 85 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 85 (365)
+++|+.|++++|.++.... + ...++|++|++++|.+++..+ +..+++|++|++++|++++ +| .+..
T Consensus 45 l~~L~~L~l~~~~i~~~~~--~--------~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~ 110 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG--I--------QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKD 110 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT--G--------GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTT
T ss_pred cCcccEEEccCCCcccChh--H--------hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhcc
Confidence 4556666666666655421 1 111455777888888875443 7788888888888888874 33 4778
Q ss_pred CCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhc
Q 017800 86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165 (365)
Q Consensus 86 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~ 165 (365)
+++|++|++++|++++. ..+..+++|+.|++++|++++. ..+ ..+++|+.|++++|.+++..+ +..
T Consensus 111 l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l--~~l~~L~~L~L~~N~l~~~~~---l~~----- 176 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVL--SRLTKLDTLSLEDNQISDIVP---LAG----- 176 (291)
T ss_dssp CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGG--GGCTTCSEEECCSSCCCCCGG---GTT-----
T ss_pred CCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhh--ccCCCCCEEEccCCccccchh---hcC-----
Confidence 88888888888888763 4577788888888888887654 223 677888888888888776533 111
Q ss_pred ccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
+++|+.|++++|.+++ +| .+..+++|+.|++++|+++
T Consensus 177 --------------------------------------l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 177 --------------------------------------LTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp --------------------------------------CTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred --------------------------------------CCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 4667888888888884 44 3777777776666665554
No 96
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=5.2e-22 Score=190.32 Aligned_cols=144 Identities=16% Similarity=0.161 Sum_probs=85.4
Q ss_pred cccEEEccCCCCCCc----CC---CCCCCCcEEECCCC------------------CCCCEEEccCCcCccc----CCcC
Q 017800 8 TLYYLDLSNNFLTNI----EY---FPPTNMTQLNFDSN------------------LTHKVLDMRMNNFNGK----IPRK 58 (365)
Q Consensus 8 ~L~~L~Ls~N~l~~~----~~---~~~~~L~~L~ls~N------------------~~L~~L~Ls~N~l~~~----~p~~ 58 (365)
+|++|++++|.++.. ++ ..+++|++|++++| ++|++|++++|.+++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 466666666666632 12 45566666666666 2477777777766653 2444
Q ss_pred ccCCCCcCEEEccCCcCccCCCccCc-----CCCCCCEEEccCCcCCCC----CChhhcCCCCCcEEEeeccccccccC-
Q 017800 59 FVKSCNLTSLNLNGNRLEGPLPPSLV-----NCHHLEVLNVGNNQINDN----FPNWLEILPELQVLILRSNRFWGPIG- 128 (365)
Q Consensus 59 ~~~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~~- 128 (365)
+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 55566777777777776643333332 245677777777777653 35556667777777777777654211
Q ss_pred ---CCCCccCCCCccEEEcCCCcccCc
Q 017800 129 ---ENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 129 ---~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
..+ +..+++|+.|++++|.+++.
T Consensus 246 ~l~~~~-~~~~~~L~~L~L~~n~l~~~ 271 (461)
T 1z7x_W 246 ELCPGL-LHPSSRLRTLWIWECGITAK 271 (461)
T ss_dssp HHHHHH-TSTTCCCCEEECTTSCCCHH
T ss_pred HHHHHH-hcCCCCceEEECcCCCCCHH
Confidence 111 12466777777777777653
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=2e-21 Score=182.23 Aligned_cols=198 Identities=20% Similarity=0.212 Sum_probs=151.8
Q ss_pred cCCcccEEEccCCCC---CCcCC----------CCCCCCcEEECCCC-----------------CCCCEEEccCCcCccc
Q 017800 5 GIATLYYLDLSNNFL---TNIEY----------FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGK 54 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l---~~~~~----------~~~~~L~~L~ls~N-----------------~~L~~L~Ls~N~l~~~ 54 (365)
.+++|++|+|++|.+ ++.+| ..+++|++|++++| ++|++|+|++|.+++.
T Consensus 58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 137 (386)
T 2ca6_A 58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137 (386)
T ss_dssp TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence 688999999999644 44444 46799999999999 7899999999999755
Q ss_pred CCcCccC----C---------CCcCEEEccCCcCc-cCCC---ccCcCCCCCCEEEccCCcCCC-----CCChhhcCCCC
Q 017800 55 IPRKFVK----S---------CNLTSLNLNGNRLE-GPLP---PSLVNCHHLEVLNVGNNQIND-----NFPNWLEILPE 112 (365)
Q Consensus 55 ~p~~~~~----l---------~~L~~L~L~~N~l~-~~~p---~~l~~l~~L~~L~L~~N~l~~-----~~p~~l~~l~~ 112 (365)
.+..+.. + ++|++|++++|+++ +.+| ..+..+++|++|++++|+++. ..|..+..+++
T Consensus 138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence 4444433 3 89999999999998 3444 467789999999999999983 24447889999
Q ss_pred CcEEEeeccccc----cccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccce
Q 017800 113 LQVLILRSNRFW----GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYES 188 (365)
Q Consensus 113 L~~L~L~~N~l~----~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 188 (365)
|++|+|++|.++ +.+|..+ ..+++|+.|++++|.+++.....+...+. ..
T Consensus 218 L~~L~Ls~n~l~~~g~~~l~~~l--~~~~~L~~L~L~~n~i~~~~~~~l~~~l~---~~--------------------- 271 (386)
T 2ca6_A 218 LKVLDLQDNTFTHLGSSALAIAL--KSWPNLRELGLNDCLLSARGAAAVVDAFS---KL--------------------- 271 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHG--GGCTTCCEEECTTCCCCHHHHHHHHHHHH---TC---------------------
T ss_pred ccEEECcCCCCCcHHHHHHHHHH--ccCCCcCEEECCCCCCchhhHHHHHHHHh---hc---------------------
Confidence 999999999996 5566655 78999999999999998653222111111 00
Q ss_pred EEEEEeccccchhhhhhheeeEEcCCCcccc----CCChhh-hcccccccccCcCCCcc
Q 017800 189 IILTIKGIDIKMERILTIFMTIDLSSNKFQG----GIPEVV-GKLNLLKGLNISHNNLT 242 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~L~ 242 (365)
.+++|+.|+|++|.+++ .+|..+ ..+++|++|+|++|+++
T Consensus 272 --------------~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 272 --------------ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp --------------SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred --------------cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 04678999999999997 478877 56788887666665554
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=3.8e-19 Score=153.63 Aligned_cols=141 Identities=22% Similarity=0.267 Sum_probs=103.4
Q ss_pred cEEEccCCCCCCcCCCCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCc
Q 017800 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (365)
Q Consensus 10 ~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 76 (365)
+.++++++.++.++..-.++++.|++++| ++|++|+|++|.+++..|..|.++++|++|+|++|+|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 45777777777665444456666666665 46678888888887777777888888888888888888
Q ss_pred cCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCc
Q 017800 77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 77 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
+..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+ ..+++|+.|++++|++...
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECS
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCC
Confidence 5555556778888888888888887777777788888888888888776655545 6777888888888877653
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=2.4e-19 Score=166.64 Aligned_cols=152 Identities=20% Similarity=0.201 Sum_probs=127.8
Q ss_pred CEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCc-CCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeec
Q 017800 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV-NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (365)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 120 (365)
+.++++++.++ .+|..+. ..++.|+|++|+|++..+..+. ++++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 68899999998 5777654 4689999999999988888887 999999999999999998778899999999999999
Q ss_pred cccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccch
Q 017800 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM 200 (365)
Q Consensus 121 N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (365)
|++++..+..+ ..+++|+.|+|++|.+++..|.. +..
T Consensus 98 N~l~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~~~-~~~---------------------------------------- 134 (361)
T 2xot_A 98 NHLHTLDEFLF--SDLQALEVLLLYNNHIVVVDRNA-FED---------------------------------------- 134 (361)
T ss_dssp SCCCEECTTTT--TTCTTCCEEECCSSCCCEECTTT-TTT----------------------------------------
T ss_pred CcCCcCCHHHh--CCCcCCCEEECCCCcccEECHHH-hCC----------------------------------------
Confidence 99987766666 89999999999999998765543 332
Q ss_pred hhhhhheeeEEcCCCccccCCChhh---hcccccccccCcCCCcc
Q 017800 201 ERILTIFMTIDLSSNKFQGGIPEVV---GKLNLLKGLNISHNNLT 242 (365)
Q Consensus 201 ~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~L~ 242 (365)
+++|+.|+|++|+|++..+..+ ..+++|+.|+|++|+|+
T Consensus 135 ---l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 135 ---MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp ---CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred ---cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 5678899999999996555555 57899999999988876
No 100
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=4.1e-21 Score=184.10 Aligned_cols=214 Identities=17% Similarity=0.184 Sum_probs=141.8
Q ss_pred cCCcccEEEccCCCCCCcCC--------CCCCCCcEEECCCC-----------------CCCCEEEccCCcCcccCCcCc
Q 017800 5 GIATLYYLDLSNNFLTNIEY--------FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKF 59 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~--------~~~~~L~~L~ls~N-----------------~~L~~L~Ls~N~l~~~~p~~~ 59 (365)
.+++|++|++++|.+++..+ ...++|++|++++| ++|++|++++|.+++..+..+
T Consensus 111 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 190 (461)
T 1z7x_W 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVL 190 (461)
T ss_dssp SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHH
Confidence 67889999999999876433 23567999999988 689999999998876544444
Q ss_pred c-----CCCCcCEEEccCCcCccC----CCccCcCCCCCCEEEccCCcCCCCC-----ChhhcCCCCCcEEEeecccccc
Q 017800 60 V-----KSCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDNF-----PNWLEILPELQVLILRSNRFWG 125 (365)
Q Consensus 60 ~-----~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~-----p~~l~~l~~L~~L~L~~N~l~~ 125 (365)
. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++
T Consensus 191 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~ 270 (461)
T 1z7x_W 191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA 270 (461)
T ss_dssp HHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence 3 256899999999998863 4667778889999999999887632 2223357889999999998865
Q ss_pred c----cCCCCCccCCCCccEEEcCCCcccCccchhhhhhh----hhhcccCCCcccccccCCCCCCCccceEEEEEeccc
Q 017800 126 P----IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNF----KAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID 197 (365)
Q Consensus 126 ~----~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l----~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (365)
. ++..+ ..+++|+.|++++|.+++..+..+...+ +.|+.++. ..+.+.
T Consensus 271 ~~~~~l~~~l--~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L----------------------~~n~l~ 326 (461)
T 1z7x_W 271 KGCGDLCRVL--RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV----------------------KSCSFT 326 (461)
T ss_dssp HHHHHHHHHH--HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC----------------------TTSCCB
T ss_pred HHHHHHHHHH--hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc----------------------CCCCCc
Confidence 3 34433 5678899999999988765443322211 23333222 111111
Q ss_pred c-------chhhhhhheeeEEcCCCccccCCChhhhc-----ccccccccCcCCCcc
Q 017800 198 I-------KMERILTIFMTIDLSSNKFQGGIPEVVGK-----LNLLKGLNISHNNLT 242 (365)
Q Consensus 198 ~-------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~L~ 242 (365)
. .....+++|++||+++|.+++..+..+.. .++|++|+|++|+++
T Consensus 327 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 327 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred hHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 1 11122456777777777766555554443 456666666666654
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=3.3e-20 Score=183.02 Aligned_cols=169 Identities=22% Similarity=0.258 Sum_probs=117.1
Q ss_pred CCcccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcC
Q 017800 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN 85 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 85 (365)
+++|+.|++++|.++.+.. +...++|+.|+|++|.+++..| +..+++|+.|+|++|++++ +| .+..
T Consensus 42 L~~L~~L~l~~n~i~~l~~----------l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~ 107 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG----------IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKD 107 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT----------GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTT
T ss_pred CCCCCEEECcCCCCCCChH----------HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhcc
Confidence 4556666666666554321 1111556777888888875544 7788888888888888874 33 6788
Q ss_pred CCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhc
Q 017800 86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165 (365)
Q Consensus 86 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~ 165 (365)
+++|++|+|++|++++ + ..+..+++|+.|+|++|.+++. ..+ ..+++|+.|+|++|.+++..| +..
T Consensus 108 l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l--~~l~~L~~L~Ls~N~l~~~~~---l~~----- 173 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVL--SRLTKLDTLSLEDNQISDIVP---LAG----- 173 (605)
T ss_dssp CTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGG--GSCTTCSEEECCSSCCCCCGG---GTT-----
T ss_pred CCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhh--cccCCCCEEECcCCcCCCchh---hcc-----
Confidence 8888888888888876 3 3577888888888888888654 223 778888888888888876544 222
Q ss_pred ccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
+++|+.|+|++|+|++. | .+..+++|+.|+|++|+++
T Consensus 174 --------------------------------------l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 174 --------------------------------------LTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp --------------------------------------CTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEE
T ss_pred --------------------------------------CCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCc
Confidence 45667788888888753 3 5777777777776666654
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1.2e-18 Score=161.20 Aligned_cols=222 Identities=13% Similarity=0.045 Sum_probs=127.8
Q ss_pred cEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCC-ccCcCCCC
Q 017800 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLP-PSLVNCHH 88 (365)
Q Consensus 10 ~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~ 88 (365)
+.++.++++++.++..-.++ +++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.++++
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~-----------l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRN-----------AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTT-----------CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred CEEEecCCCCCccCcCcCCC-----------CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 56788888888654322233 3666777777775445567778888888888887765444 35677777
Q ss_pred CCE-EEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCC-CcccCccchhhhhhhh-hhc
Q 017800 89 LEV-LNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH-NEFTGVLLTGYLDNFK-AMM 165 (365)
Q Consensus 89 L~~-L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~-N~l~~~~~~~~~~~l~-~L~ 165 (365)
+++ +.++.|+++...|..|..+++|++|++++|++.+..+..+ ....++..+++.+ +.+... +...+..+. .+.
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~~l-~~~~f~~~~~~l~ 157 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIHTI-ERNSFVGLSFESV 157 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCCEE-CTTSSTTSBSSCE
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh--cccchhhhhhhccccccccc-cccchhhcchhhh
Confidence 664 5566677777667777777888888888887765444333 4556666777754 344433 322233222 222
Q ss_pred ccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCC-CccccCCChhhhcccccccccCcCCCcc--
Q 017800 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSS-NKFQGGIPEVVGKLNLLKGLNISHNNLT-- 242 (365)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~L~-- 242 (365)
.+.+.. +.+ ..+....+. ..+++.|++++ |.++...++.|+.+++|+.|||++|+|+
T Consensus 158 ~L~L~~---N~i----------------~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 158 ILWLNK---NGI----------------QEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp EEECCS---SCC----------------CEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred hhcccc---ccc----------------cCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 222100 000 111111221 34677777764 5565444456778888888888888776
Q ss_pred ---------EEECccCccccCCCCCCCCCCCC
Q 017800 243 ---------VLNLSYNQFEGPIPRGSQFNTFP 265 (365)
Q Consensus 243 ---------~L~ls~N~l~g~~p~~~~~~~~~ 265 (365)
.|.+.+++--..+|....+..+.
T Consensus 218 p~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~ 249 (350)
T 4ay9_X 218 PSYGLENLKKLRARSTYNLKKLPTLEKLVALM 249 (350)
T ss_dssp CSSSCTTCCEEECTTCTTCCCCCCTTTCCSCC
T ss_pred ChhhhccchHhhhccCCCcCcCCCchhCcChh
Confidence 45544443333566543444433
No 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=7.1e-21 Score=174.88 Aligned_cols=203 Identities=16% Similarity=0.138 Sum_probs=158.7
Q ss_pred CCCcEEECCCC------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccC-CCccCcCCCCCCEEEc
Q 017800 28 TNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP-LPPSLVNCHHLEVLNV 94 (365)
Q Consensus 28 ~~L~~L~ls~N------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L 94 (365)
..++.++++++ +.++.|++++|.+++..+. +..+++|++|++++|.+++. +|..+..+++|++|++
T Consensus 47 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 47 SLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hhheeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 35789999998 7899999999999977665 56799999999999999866 7888899999999999
Q ss_pred cCCcCCCCCChhhcCCCCCcEEEeecc-ccccc-cCCCCCccCCCCccEEEcCCC-cccCccchhhhhhhh-hhcccCCC
Q 017800 95 GNNQINDNFPNWLEILPELQVLILRSN-RFWGP-IGENTTIVPFPSLRIIDLSHN-EFTGVLLTGYLDNFK-AMMHGNNI 170 (365)
Q Consensus 95 ~~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~-~~~~~~~~~l~~L~~L~ls~N-~l~~~~~~~~~~~l~-~L~~l~~~ 170 (365)
++|.+++..|..++.+++|++|++++| .+++. ++..+ ..+++|++|++++| .+++......+..++ .|+.++..
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL--SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH--HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH--hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 999999888889999999999999999 67652 44433 67899999999999 888652223466677 77665541
Q ss_pred cccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCc-cccCCChhhhcccccccccCcCCC-cc------
Q 017800 171 SVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK-FQGGIPEVVGKLNLLKGLNISHNN-LT------ 242 (365)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-L~------ 242 (365)
.... .+. ...-......+++|++|++++|. +++..+..++.+++|++|++++|. ++
T Consensus 204 ~~~~-~~~---------------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 204 GYRK-NLQ---------------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp SCGG-GSC---------------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred CCcc-cCC---------------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 1100 000 00001233457899999999999 888888899999999999999993 32
Q ss_pred --------EEECccC
Q 017800 243 --------VLNLSYN 249 (365)
Q Consensus 243 --------~L~ls~N 249 (365)
.|++++|
T Consensus 268 l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGCTTCCEEECTTS
T ss_pred HhcCCCCCEEeccCc
Confidence 7888777
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2.7e-18 Score=149.16 Aligned_cols=142 Identities=22% Similarity=0.147 Sum_probs=106.3
Q ss_pred ccEEEccCCCCCCcCCCCCCCCcEEECCCC-------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcC
Q 017800 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRL 75 (365)
Q Consensus 9 L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 75 (365)
.+.++.+++.++.++..-.++|++|++++| ++|++|+|++|++++..+..|..+++|++|+|++|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 345667777666655544456666666555 4668888888888766666778888888888888888
Q ss_pred ccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCcc
Q 017800 76 EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153 (365)
Q Consensus 76 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~ 153 (365)
++..+..|..+++|++|++++|+++. +|..+..+++|++|++++|++++..+..+ ..+++|+.|++++|++....
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAF--DRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECTTSCBCTTB
T ss_pred CccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCCccCCc
Confidence 87666677888888888888888884 77778888888888888888876555444 77888888888888887654
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=5.7e-19 Score=174.19 Aligned_cols=128 Identities=26% Similarity=0.294 Sum_probs=102.1
Q ss_pred cCCcccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCc
Q 017800 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 84 (365)
.+++|+.|+|++|.++++.+ +...++|+.|+|++|.+++ +| .+..+++|+.|+|++|++++ + ..+.
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~----------l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~ 128 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKP----------LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLV 128 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGG----------GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGG
T ss_pred cCCCCCEEEeeCCCCCCChh----------hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-cccc
Confidence 57899999999999998765 2223445777888888874 33 68888889999999998885 3 4688
Q ss_pred CCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCc
Q 017800 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 85 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
.+++|+.|+|++|++++. ..+..+++|+.|+|++|.+.+..| + ..+++|+.|+|++|.+++.
T Consensus 129 ~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l--~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 129 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L--AGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G--TTCTTCCEEECCSSCCCBC
T ss_pred CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h--ccCCCCCEEECcCCCCCCC
Confidence 888999999999988874 568888899999999998877655 3 7888899999999888764
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=6.2e-19 Score=158.88 Aligned_cols=128 Identities=26% Similarity=0.277 Sum_probs=108.9
Q ss_pred cCCcccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCc
Q 017800 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 84 (365)
.+++|++|++++|++++..+ +...++|++|++++|.+++ +| .+..+++|++|++++|++++. ..+.
T Consensus 66 ~l~~L~~L~L~~n~l~~~~~----------l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~ 131 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIKP----------LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLV 131 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGG----------GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGG
T ss_pred cCCCCCEEEccCCccCCCcc----------cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhc
Confidence 57899999999999998765 2233445888999999985 44 489999999999999999963 5788
Q ss_pred CCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCc
Q 017800 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 85 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
.+++|++|++++|++++. ..+..+++|+.|++++|++++..+ + ..+++|+.|++++|.+++.
T Consensus 132 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l--~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 132 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L--AGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G--TTCTTCCEEECCSSCCCBC
T ss_pred CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h--cCCCccCEEECCCCcCCCC
Confidence 999999999999999984 678999999999999999987655 4 8899999999999999864
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=2.5e-19 Score=152.02 Aligned_cols=140 Identities=16% Similarity=0.206 Sum_probs=81.6
Q ss_pred cCCcccEEEccCCCCCCcCC-CCCCCCcEEECCCC-----------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccC
Q 017800 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~ls~N-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 72 (365)
.+++|++|++++|.++.... ..+++|++|++++| ++|++|++++|.+++..|..++.+++|++|++++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 56789999999999986554 55666666666655 4555555555555555555555555555555555
Q ss_pred CcCccCCCccCcCCCCCCEEEccCCc-CCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCccc
Q 017800 73 NRLEGPLPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (365)
Q Consensus 73 N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~ 150 (365)
|++++..|..+..+++|++|++++|. ++. +| .+..+++|++|++++|.+++. + .+ ..+++|+.|++++|++.
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l--~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GI--EDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TG--GGCSSCCEEEECBC---
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-Hh--ccCCCCCEEEeeCcccC
Confidence 55555455555555555555555555 433 33 455555555555555555432 1 22 45555555555555543
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=4.9e-19 Score=150.21 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=116.5
Q ss_pred CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEe
Q 017800 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 118 (365)
++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 56788888888888 566 6888889999999999776 2347888899999999999998777788888899999999
Q ss_pred eccccccccCCCCCccCCCCccEEEcCCCc-ccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccc
Q 017800 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNE-FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID 197 (365)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~-l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (365)
++|.+++..+..+ ..+++|+.|++++|. ++.. | . +..
T Consensus 120 s~n~i~~~~~~~l--~~l~~L~~L~L~~n~~i~~~-~-~-l~~------------------------------------- 157 (197)
T 4ezg_A 120 SHSAHDDSILTKI--NTLPKVNSIDLSYNGAITDI-M-P-LKT------------------------------------- 157 (197)
T ss_dssp CSSBCBGGGHHHH--TTCSSCCEEECCSCTBCCCC-G-G-GGG-------------------------------------
T ss_pred cCCccCcHhHHHH--hhCCCCCEEEccCCCCcccc-H-h-hcC-------------------------------------
Confidence 9998887666655 788899999999987 5432 2 1 222
Q ss_pred cchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 198 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
+++|+.|++++|++++ ++ .+..+++|+.|++++|++.
T Consensus 158 ------l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 158 ------LPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ------CSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ------CCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 5678899999999985 44 7888999998888887764
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=2.6e-18 Score=167.91 Aligned_cols=161 Identities=24% Similarity=0.272 Sum_probs=135.6
Q ss_pred CCcccEEEccCCCCCCcCCCCCCCCcEEECCCC---------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCc
Q 017800 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 76 (365)
+++|++|+|++|+|+.++ ..+++|+.|++++| .+|++|+|++|.+++ +|. .+++|+.|++++|+++
T Consensus 79 ~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT 153 (571)
T ss_dssp CTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred cCCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence 367999999999999665 77899999999999 289999999999997 666 6899999999999999
Q ss_pred cCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCc-------cEEEcCCCcc
Q 017800 77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL-------RIIDLSHNEF 149 (365)
Q Consensus 77 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-------~~L~ls~N~l 149 (365)
+ +|. .+++|++|++++|++++ +|. +. ++|+.|++++|+++ .+|. + .. +| +.|++++|.|
T Consensus 154 ~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~--~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 154 M-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-V--PV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp C-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-C--C----------CCEEEECCSSCC
T ss_pred c-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-H--HH--hhhcccccceEEecCCCcc
Confidence 6 665 67899999999999998 777 65 99999999999997 5666 4 33 67 9999999999
Q ss_pred cCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhccc
Q 017800 150 TGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN 229 (365)
Q Consensus 150 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 229 (365)
+. +|.. +.. +++|+.|+|++|.+++.+|..++.++
T Consensus 220 ~~-lp~~-l~~-------------------------------------------l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 220 TH-IPEN-ILS-------------------------------------------LDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CCGG-GGG-------------------------------------------SCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred ee-cCHH-Hhc-------------------------------------------CCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 85 4544 222 45678999999999999999998876
Q ss_pred c
Q 017800 230 L 230 (365)
Q Consensus 230 ~ 230 (365)
.
T Consensus 255 ~ 255 (571)
T 3cvr_A 255 A 255 (571)
T ss_dssp H
T ss_pred c
Confidence 5
No 110
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=2.8e-18 Score=144.91 Aligned_cols=110 Identities=24% Similarity=0.247 Sum_probs=86.2
Q ss_pred CEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCc-cCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeec
Q 017800 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (365)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 120 (365)
+++++++|.++ .+|..+.. ++++|++++|++++..+. .+..+++|++|+|++|++++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888886 67765543 788888888888866554 478888888888888888887788888888888888888
Q ss_pred cccccccCCCCCccCCCCccEEEcCCCcccCccchh
Q 017800 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (365)
Q Consensus 121 N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 156 (365)
|++++..+..+ ..+++|++|++++|.+++..|..
T Consensus 88 N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~ 121 (192)
T 1w8a_A 88 NKIKEISNKMF--LGLHQLKTLNLYDNQISCVMPGS 121 (192)
T ss_dssp CCCCEECSSSS--TTCTTCCEEECCSSCCCEECTTS
T ss_pred CcCCccCHHHh--cCCCCCCEEECCCCcCCeeCHHH
Confidence 88877776655 77888888888888887765543
No 111
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=7.3e-18 Score=142.37 Aligned_cols=134 Identities=22% Similarity=0.216 Sum_probs=117.6
Q ss_pred cEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCc-CccCCCCcCEEEccCCcCccCCCccCcCCCC
Q 017800 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPR-KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (365)
Q Consensus 10 ~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 88 (365)
+.+++++|.++.++..-.. ++++|++++|.+++..+. .|..+++|++|+|++|++++..|..|.++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~-----------~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL-----------HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT-----------TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CEEEcCCCCcCcCccCCCC-----------CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence 6899999999765442222 347889999999876664 4899999999999999999988999999999
Q ss_pred CCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchh
Q 017800 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (365)
Q Consensus 89 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 156 (365)
|++|+|++|++++..|..|..+++|++|++++|++++..|..+ ..+++|+.|++++|.+++..+..
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGH
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcch
Confidence 9999999999999888889999999999999999999888877 89999999999999999876643
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=2.3e-19 Score=159.28 Aligned_cols=168 Identities=18% Similarity=0.269 Sum_probs=126.5
Q ss_pred cCCcccEEEccCCCCCCcCC-CCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccC
Q 017800 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 83 (365)
++.+++.+++++|.++++.. ..+ ++|++|++++|.++ .+| .+..+++|++|++++|++++. +. +
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l-----------~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l 81 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKEL-----------SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-L 81 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHH-----------TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-G
T ss_pred HHHHHHHHHhcCCCcccccchhhc-----------CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-h
Confidence 45566777788888776542 222 34577788888887 455 688899999999999999954 43 8
Q ss_pred cCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhh
Q 017800 84 VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163 (365)
Q Consensus 84 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~ 163 (365)
.++++|++|++++|++++ +|.. .. ++|+.|++++|++++. + .+ ..+++|+.|++++|.+++. + . +..
T Consensus 82 ~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~-~l--~~l~~L~~L~Ls~N~i~~~-~-~-l~~--- 148 (263)
T 1xeu_A 82 KDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-D-SL--IHLKNLEILSIRNNKLKSI-V-M-LGF--- 148 (263)
T ss_dssp TTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-G-GG--TTCTTCCEEECTTSCCCBC-G-G-GGG---
T ss_pred ccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCC-h-hh--cCcccccEEECCCCcCCCC-h-H-Hcc---
Confidence 899999999999999987 4443 33 8999999999998763 2 23 7899999999999998864 2 1 222
Q ss_pred hcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCcc
Q 017800 164 MMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 164 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
+++|+.|++++|++++. ..++.+++|+.|++++|.++
T Consensus 149 ----------------------------------------l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 149 ----------------------------------------LSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ----------------------------------------CTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ----------------------------------------CCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 46778899999999966 66788888887666666554
No 113
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=3.2e-18 Score=158.32 Aligned_cols=202 Identities=13% Similarity=0.028 Sum_probs=143.8
Q ss_pred CcccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCC-cCccCCCCcCE-EEccCCcCccCCCccCc
Q 017800 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIP-RKFVKSCNLTS-LNLNGNRLEGPLPPSLV 84 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L~~N~l~~~~p~~l~ 84 (365)
+++++|+|++|+|+.+.+..+.+|..| ++|+|++|++.+.+| .+|.+++++++ +.+++|++++..|..|.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L--------~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~ 101 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDL--------EKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTC--------CEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCC--------CEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence 579999999999998877666666544 888999999876665 46888888775 66778999988888899
Q ss_pred CCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeecc-ccccccCCCCCccCC-CCccEEEcCCCcccCccchhhhhhhh
Q 017800 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN-RFWGPIGENTTIVPF-PSLRIIDLSHNEFTGVLLTGYLDNFK 162 (365)
Q Consensus 85 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l-~~L~~L~ls~N~l~~~~~~~~~~~l~ 162 (365)
++++|++|++++|+++...+..+....++..|++.++ ++....+..+ ..+ ..++.|++++|.++.. |...+. ..
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f--~~~~~~l~~L~L~~N~i~~i-~~~~f~-~~ 177 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--VGLSFESVILWLNKNGIQEI-HNSAFN-GT 177 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS--TTSBSSCEEEECCSSCCCEE-CTTSST-TE
T ss_pred hccccccccccccccccCCchhhcccchhhhhhhccccccccccccch--hhcchhhhhhccccccccCC-Chhhcc-cc
Confidence 9999999999999999866667777778889998764 5544333333 444 4688999999999854 333232 23
Q ss_pred hhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcC
Q 017800 163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238 (365)
Q Consensus 163 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 238 (365)
.+..+..... + ....++...+..+++|+.|||++|+|+...+..+.++++|+.+++.+
T Consensus 178 ~L~~l~l~~~--n----------------~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 178 QLDELNLSDN--N----------------NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235 (350)
T ss_dssp EEEEEECTTC--T----------------TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTT
T ss_pred chhHHhhccC--C----------------cccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCC
Confidence 3333322110 0 11233444556688999999999999966566677777777666543
No 114
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=9.7e-17 Score=135.51 Aligned_cols=131 Identities=20% Similarity=0.157 Sum_probs=114.0
Q ss_pred cEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCC
Q 017800 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL 89 (365)
Q Consensus 10 ~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 89 (365)
+.+++++|.++.++..-.+ +|++|++++|.++ .+|..|..+++|++|+|++|+|++..+..|.++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~~-----------~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPR-----------DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTTSCCSSCCSCCCT-----------TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEcCCCCCCcCCCCCCC-----------CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence 5789999999876543332 3477899999998 788999999999999999999998888899999999
Q ss_pred CEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccc
Q 017800 90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (365)
Q Consensus 90 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~ 154 (365)
++|+|++|++++..|..|..+++|++|+|++|.+++..+..+ ..+++|+.|++++|++...-.
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGG
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCc
Confidence 999999999999888899999999999999999986555555 789999999999999976543
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=5.6e-18 Score=170.91 Aligned_cols=112 Identities=23% Similarity=0.266 Sum_probs=103.2
Q ss_pred CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEe
Q 017800 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 118 (365)
+.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|.++++|++|+|++|.|+ .+|..|+.+++|++|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 67899999999998 78888889999999999999999 88999999999999999999999 58999999999999999
Q ss_pred eccccccccCCCCCccCCCCccEEEcCCCcccCccchh
Q 017800 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (365)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 156 (365)
++|.++ .+|..+ ..+++|+.|+|++|.+++.+|..
T Consensus 301 ~~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 301 FDNMVT-TLPWEF--GNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp CSSCCC-CCCSST--TSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCCCCC-ccChhh--hcCCCccEEeCCCCccCCCChHH
Confidence 999996 678776 89999999999999999988865
No 116
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=1.3e-16 Score=132.80 Aligned_cols=133 Identities=19% Similarity=0.148 Sum_probs=114.0
Q ss_pred ccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCC
Q 017800 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (365)
Q Consensus 9 L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 88 (365)
.+.+++++|+++.++....+ +|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~-----------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPS-----------SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCT-----------TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEecCCCCccCCCCCCC-----------CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc
Confidence 46899999999876543333 3477899999999777778899999999999999999777777899999
Q ss_pred CCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccc
Q 017800 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (365)
Q Consensus 89 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~ 154 (365)
|++|++++|++++..+..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|++.+..|
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence 9999999999999777778999999999999999986555444 789999999999999998765
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=1.7e-17 Score=136.79 Aligned_cols=82 Identities=27% Similarity=0.241 Sum_probs=41.3
Q ss_pred CCEEEccCCcCc-ccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEee
Q 017800 41 HKVLDMRMNNFN-GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (365)
Q Consensus 41 L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 119 (365)
|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 344555555554 44455455555555555555555533 444555555555555555554444444444555555555
Q ss_pred ccccc
Q 017800 120 SNRFW 124 (365)
Q Consensus 120 ~N~l~ 124 (365)
+|.++
T Consensus 104 ~N~l~ 108 (168)
T 2ell_A 104 GNKLK 108 (168)
T ss_dssp SSSCC
T ss_pred CCccC
Confidence 54443
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=2.7e-18 Score=173.21 Aligned_cols=181 Identities=13% Similarity=0.099 Sum_probs=106.0
Q ss_pred CcccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCC
Q 017800 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 86 (365)
+.++.|+|++|.+..... ..|+.++|+.| .+..++++.|.+. ..|..|..+..|+.|+|++|.+. .+|..+..+
T Consensus 173 ~~~~~l~L~~n~~~~~~~---~~l~~l~Ls~~-~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l 246 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ---ALLQHKKLSQY-SIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKY 246 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGC
T ss_pred CccceEEeeCCCCCcchh---hHhhcCccCcc-cccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCC
Confidence 456778888887776432 23444555544 3456677777776 67888999999999999999999 788888899
Q ss_pred CCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcc
Q 017800 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (365)
Q Consensus 87 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~ 166 (365)
++|++|+|++|.|+ .+|..|+.+++|++|+|++|.|+ .+|..+ +.+++|++|+|++|.++ .+|.. ++.+
T Consensus 247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~-~lp~~-~~~l----- 315 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL--GSCFQLKYFYFFDNMVT-TLPWE-FGNL----- 315 (727)
T ss_dssp CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG--GGGTTCSEEECCSSCCC-CCCSS-TTSC-----
T ss_pred CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh--cCCCCCCEEECCCCCCC-ccChh-hhcC-----
Confidence 99999999999999 58999999999999999999998 678876 89999999999999997 55655 5543
Q ss_pred cCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccc-cccccCcCCCcc
Q 017800 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL-LKGLNISHNNLT 242 (365)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~L~ 242 (365)
++|+.|+|++|.|++.+|..+..+.. +..|+|++|.++
T Consensus 316 --------------------------------------~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 316 --------------------------------------CNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp --------------------------------------TTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred --------------------------------------CCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence 45566677777777666666654422 223555555544
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=9.4e-19 Score=171.55 Aligned_cols=109 Identities=28% Similarity=0.377 Sum_probs=98.1
Q ss_pred CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEe
Q 017800 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 118 (365)
..|+.|+|++|.|++ +|. |+.+++|+.|+|++|+|+ .+|..++++++|++|+|++|++++ +| .++.+++|++|+|
T Consensus 441 ~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 478899999999995 676 999999999999999999 789999999999999999999998 67 8999999999999
Q ss_pred ecccccccc-CCCCCccCCCCccEEEcCCCcccCccc
Q 017800 119 RSNRFWGPI-GENTTIVPFPSLRIIDLSHNEFTGVLL 154 (365)
Q Consensus 119 ~~N~l~~~~-~~~~~~~~l~~L~~L~ls~N~l~~~~~ 154 (365)
++|++++.. |..+ ..+++|+.|++++|.+++.+|
T Consensus 516 s~N~l~~~~~p~~l--~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 516 CNNRLQQSAAIQPL--VSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CSSCCCSSSTTGGG--GGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCCcHHH--hcCCCCCEEEecCCcCCCCcc
Confidence 999998876 7766 889999999999999987755
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=2.3e-17 Score=133.31 Aligned_cols=84 Identities=26% Similarity=0.284 Sum_probs=39.1
Q ss_pred CcCEEEccCCcCc-cCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEE
Q 017800 64 NLTSLNLNGNRLE-GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRII 142 (365)
Q Consensus 64 ~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 142 (365)
+|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+ ..+++|+.|
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L 93 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA--EKCPNLTHL 93 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH--HHCTTCCEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh--hhCCCCCEE
Confidence 3444444444444 34444444444444444444444442 334444444444444444443333322 334555555
Q ss_pred EcCCCcccC
Q 017800 143 DLSHNEFTG 151 (365)
Q Consensus 143 ~ls~N~l~~ 151 (365)
++++|.+++
T Consensus 94 ~ls~N~i~~ 102 (149)
T 2je0_A 94 NLSGNKIKD 102 (149)
T ss_dssp ECTTSCCCS
T ss_pred ECCCCcCCC
Confidence 555555554
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=2e-17 Score=136.46 Aligned_cols=136 Identities=20% Similarity=0.073 Sum_probs=113.7
Q ss_pred cCCcccEEEccCCCCC-CcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccC
Q 017800 5 GIATLYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~-~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 83 (365)
..++|+.|++++|.++ +.+|..+..+.. |++|++++|.+++. ..+..+++|++|++++|++++.+|..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~--------L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVN--------LEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGG--------CCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCC--------CCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 3578999999999998 555544444443 48899999999865 789999999999999999998788888
Q ss_pred cCCCCCCEEEccCCcCCCCCC-hhhcCCCCCcEEEeeccccccccC---CCCCccCCCCccEEEcCCCcccCc
Q 017800 84 VNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIG---ENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 84 ~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~---~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+ ..+ ..+++|+.|++++|.+...
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF--KLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHH--TTCSSCCEETTEETTSCBC
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHH--HhCccCcEecCCCCChhhc
Confidence 889999999999999998422 788999999999999999976544 234 7899999999999988754
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1.4e-16 Score=141.33 Aligned_cols=137 Identities=21% Similarity=0.284 Sum_probs=89.6
Q ss_pred cCCcccEEEccCCCCCCcCC-CCCCCCcEEECCCC-----------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccC
Q 017800 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~ls~N-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 72 (365)
++++|++|++++|.++.+.. ..+++|++|++++| ++|++|++++|++++ +|.. .. ++|++|++++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~ 115 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDN 115 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCS
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccC
Confidence 57899999999999987654 55677777776666 456666666666664 3322 22 6666666766
Q ss_pred CcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCc
Q 017800 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 73 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
|++++. +.+..+++|++|++++|++++. + .+..+++|++|++++|++++. ..+ ..+++|+.|++++|.+++.
T Consensus 116 N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l--~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 116 NELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGL--TRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTS--TTCCCCCEEEEEEEEEECC
T ss_pred CccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHh--ccCCCCCEEeCCCCcccCC
Confidence 666642 2466666667777777666663 3 466666667777766666554 223 5666666666666666544
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=7.6e-17 Score=130.19 Aligned_cols=125 Identities=19% Similarity=0.148 Sum_probs=92.1
Q ss_pred CCCEEEccCCcCc-ccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEe
Q 017800 40 THKVLDMRMNNFN-GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (365)
Q Consensus 40 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 118 (365)
+|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 4577788888887 67777778888888888888888755 67778888888888888888777777777888888888
Q ss_pred eccccccc-cCCCCCccCCCCccEEEcCCCcccCccc--hhhhhhhhhhcccC
Q 017800 119 RSNRFWGP-IGENTTIVPFPSLRIIDLSHNEFTGVLL--TGYLDNFKAMMHGN 168 (365)
Q Consensus 119 ~~N~l~~~-~~~~~~~~~l~~L~~L~ls~N~l~~~~~--~~~~~~l~~L~~l~ 168 (365)
++|.+++. .+..+ ..+++|+.|++++|.+++..+ ...+..+++|+.++
T Consensus 96 s~N~i~~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 96 SGNKIKDLSTIEPL--KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp TTSCCCSHHHHGGG--GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred CCCcCCChHHHHHH--hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 88887653 22444 778888888888888876644 13366666665544
No 124
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=2.3e-18 Score=170.09 Aligned_cols=245 Identities=12% Similarity=0.040 Sum_probs=128.1
Q ss_pred cCCcccEEEccCCCCCCcCC-------CCCCCCcEEECCCC-----------------CCCCEEEccCCcCcccCCcCcc
Q 017800 5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKFV 60 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~-------~~~~~L~~L~ls~N-----------------~~L~~L~Ls~N~l~~~~p~~~~ 60 (365)
++++|++|+|++|.+++... ..+++|++|++++| ++|+.|++++|.+.+ +|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 46777788888777765421 34667777777665 567777777776653 333333
Q ss_pred CCCCcCEEE---------------------------ccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCC-hhhcCCCC
Q 017800 61 KSCNLTSLN---------------------------LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPE 112 (365)
Q Consensus 61 ~l~~L~~L~---------------------------L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~ 112 (365)
.+++|++|+ ++++.. +.+|..+..+++|++|++++|.+++... ..+..+++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 334444443 333322 2455556667788888888888655332 23466777
Q ss_pred CcEEEeeccccccccCCCCCccCCCCccEEEcC------------------------------------CCcccCccchh
Q 017800 113 LQVLILRSNRFWGPIGENTTIVPFPSLRIIDLS------------------------------------HNEFTGVLLTG 156 (365)
Q Consensus 113 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls------------------------------------~N~l~~~~~~~ 156 (365)
|+.|+++++-..+.++... ..+++|+.|+++ .|.+++..+..
T Consensus 320 L~~L~L~~~~~~~~l~~~~--~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~ 397 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLA--QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHH--HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred CCEEeccCccCHHHHHHHH--HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence 7777776332111111111 234445555555 44444333322
Q ss_pred hhhhhhhhcccCCCccc-ccccCCCC----------CCCccceEEEEE-e-ccccc----hhhhhhheeeEEcCCCcccc
Q 017800 157 YLDNFKAMMHGNNISVE-VDYMTPLN----------SSNYYESIILTI-K-GIDIK----MERILTIFMTIDLSSNKFQG 219 (365)
Q Consensus 157 ~~~~l~~L~~l~~~~~~-~~~~~~~~----------~~~~~~~~~~~~-~-~~~~~----~~~~l~~L~~L~Ls~N~l~~ 219 (365)
+...+++|+.++..... .+.+.+.+ ....+..+.+.. . .+... +...+++|+.|++++|++++
T Consensus 398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence 11223333333221000 11111110 012233444432 1 12211 11225678888888888775
Q ss_pred -CCChhhhcccccccccCcCCCcc---------------EEECccCcccc
Q 017800 220 -GIPEVVGKLNLLKGLNISHNNLT---------------VLNLSYNQFEG 253 (365)
Q Consensus 220 -~~p~~l~~l~~L~~L~Ls~N~L~---------------~L~ls~N~l~g 253 (365)
.++..+..+++|++|+|++|.++ .|++++|++++
T Consensus 478 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 34555567788888888888755 78888888764
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=5.2e-16 Score=131.04 Aligned_cols=107 Identities=25% Similarity=0.359 Sum_probs=96.3
Q ss_pred CEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeecc
Q 017800 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (365)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 121 (365)
+++++++|.++ .+|..+. .+|++|++++|+++ .+|..|.++++|++|++++|.+++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67899999998 6776554 68999999999999 78899999999999999999999988889999999999999999
Q ss_pred ccccccCCCCCccCCCCccEEEcCCCcccCccc
Q 017800 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (365)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~ 154 (365)
++++..+..+ ..+++|+.|++++|.+++..+
T Consensus 89 ~l~~i~~~~f--~~l~~L~~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 89 RLRCIPPRTF--DGLKSLRLLSLHGNDISVVPE 119 (193)
T ss_dssp CCCBCCTTTT--TTCTTCCEEECCSSCCCBCCT
T ss_pred ccCEeCHHHh--CCCCCCCEEECCCCCCCeeCh
Confidence 9988777766 899999999999999986544
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=7.3e-16 Score=128.16 Aligned_cols=133 Identities=21% Similarity=0.270 Sum_probs=110.8
Q ss_pred CCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeec
Q 017800 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (365)
Q Consensus 41 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 120 (365)
.+.+++++|+++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 378899999998 5665443 6899999999999977777889999999999999999987777789999999999999
Q ss_pred cccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccch
Q 017800 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM 200 (365)
Q Consensus 121 N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (365)
|++++..+..+ ..+++|+.|++++|.+++..+ ..+..
T Consensus 86 N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~-~~~~~---------------------------------------- 122 (177)
T 2o6r_A 86 NKLQSLPNGVF--DKLTQLKELALDTNQLKSVPD-GIFDR---------------------------------------- 122 (177)
T ss_dssp SCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCT-TTTTT----------------------------------------
T ss_pred CCccccCHHHh--hCCcccCEEECcCCcceEeCH-HHhcC----------------------------------------
Confidence 99987666655 789999999999999986543 32222
Q ss_pred hhhhhheeeEEcCCCccccCCC
Q 017800 201 ERILTIFMTIDLSSNKFQGGIP 222 (365)
Q Consensus 201 ~~~l~~L~~L~Ls~N~l~~~~p 222 (365)
+++|+.|+|++|.+++..|
T Consensus 123 ---l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 123 ---LTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ---CTTCCEEECCSSCBCCCHH
T ss_pred ---CcccCEEEecCCCeeccCc
Confidence 4667889999999997654
No 127
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=1.5e-17 Score=164.27 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=30.6
Q ss_pred hhheeeEEcCCCccccC-CChhhhcccccccccCcCCCcc
Q 017800 204 LTIFMTIDLSSNKFQGG-IPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 204 l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
+++|+.|++++|.+++. ++..+..+++|++|+|++|+++
T Consensus 487 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 487 CPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 56788899999988755 3444567888999999999877
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.62 E-value=2.2e-18 Score=146.31 Aligned_cols=105 Identities=22% Similarity=0.318 Sum_probs=72.9
Q ss_pred CCEEEccCCcCcccCCc------CccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCc
Q 017800 41 HKVLDMRMNNFNGKIPR------KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ 114 (365)
Q Consensus 41 L~~L~Ls~N~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 114 (365)
++.++++.+.++|.+|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++. +|..+..+++|+
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~ 96 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLE 96 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCS
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCC
Confidence 34555555666555554 67777777888887777775 55 67777778888888877774 666666677777
Q ss_pred EEEeeccccccccCCCCCccCCCCccEEEcCCCcccCc
Q 017800 115 VLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 115 ~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 152 (365)
+|++++|++++ +| .+ ..+++|+.|++++|.+++.
T Consensus 97 ~L~L~~N~l~~-l~-~~--~~l~~L~~L~l~~N~i~~~ 130 (198)
T 1ds9_A 97 ELWISYNQIAS-LS-GI--EKLVNLRVLYMSNNKITNW 130 (198)
T ss_dssp EEEEEEEECCC-HH-HH--HHHHHSSEEEESEEECCCH
T ss_pred EEECcCCcCCc-CC-cc--ccCCCCCEEECCCCcCCch
Confidence 88887777765 33 22 6677777777777777653
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=8.5e-16 Score=127.68 Aligned_cols=133 Identities=17% Similarity=0.252 Sum_probs=81.4
Q ss_pred ccCCCCcCEEEccCCcCccCCCccCcCCC-CCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCC
Q 017800 59 FVKSCNLTSLNLNGNRLEGPLPPSLVNCH-HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFP 137 (365)
Q Consensus 59 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 137 (365)
+..+.+|+.|++++|+++ .+|. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+ ..++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~ 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLD--QALP 88 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHH--HHCT
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchh--hcCC
Confidence 455666777777777766 3343 33333 677777777777663 456666777777777777664433322 5667
Q ss_pred CccEEEcCCCcccCccch-hhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCc
Q 017800 138 SLRIIDLSHNEFTGVLLT-GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK 216 (365)
Q Consensus 138 ~L~~L~ls~N~l~~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 216 (365)
+|+.|++++|.++.. |. ..+.. +++|+.|++++|.
T Consensus 89 ~L~~L~L~~N~i~~~-~~~~~l~~-------------------------------------------l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 89 DLTELILTNNSLVEL-GDLDPLAS-------------------------------------------LKSLTYLCILRNP 124 (176)
T ss_dssp TCCEEECCSCCCCCG-GGGGGGGG-------------------------------------------CTTCCEEECCSSG
T ss_pred CCCEEECCCCcCCcc-hhhHhhhc-------------------------------------------CCCCCEEEecCCC
Confidence 777777777776532 21 11111 4556777777777
Q ss_pred cccCCCh----hhhcccccccccCcCCCcc
Q 017800 217 FQGGIPE----VVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 217 l~~~~p~----~l~~l~~L~~L~Ls~N~L~ 242 (365)
++ .+|. .++.+++|+.||+++|.+.
T Consensus 125 i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 125 VT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77 4454 3777787887777776654
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.61 E-value=6.2e-15 Score=121.75 Aligned_cols=109 Identities=19% Similarity=0.157 Sum_probs=87.4
Q ss_pred CCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeec
Q 017800 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (365)
Q Consensus 41 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 120 (365)
.+.+++++|.++ .+|..+. .+|++|+|++|+|++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 367888888887 5666553 7888888888888877788888888888888888888886666778888899999998
Q ss_pred cccccccCCCCCccCCCCccEEEcCCCcccCccc
Q 017800 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (365)
Q Consensus 121 N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~ 154 (365)
|++++..+..+ ..+++|+.|++++|+++...+
T Consensus 88 N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAF--DNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTT--TTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHh--cCCCCCCEEEeCCCCCCCCch
Confidence 88876655555 788899999999998876543
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=7.5e-16 Score=128.02 Aligned_cols=134 Identities=19% Similarity=0.134 Sum_probs=103.9
Q ss_pred cCCcccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCc
Q 017800 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 84 (365)
++++|+.|++++|+++.+.. +..+. ++|++|++++|.+++. ..|..+++|++|++++|++++..+..+.
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~--~~~~~-------~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN--LGATL-------DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC--GGGGT-------TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred CcCCceEEEeeCCCCchhHH--hhhcC-------CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhh
Confidence 57789999999999886521 11111 2457888888988864 6788999999999999999965555568
Q ss_pred CCCCCCEEEccCCcCCCCCCh--hhcCCCCCcEEEeeccccccccCCC--CCccCCCCccEEEcCCCcccC
Q 017800 85 NCHHLEVLNVGNNQINDNFPN--WLEILPELQVLILRSNRFWGPIGEN--TTIVPFPSLRIIDLSHNEFTG 151 (365)
Q Consensus 85 ~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~~~~--~~~~~l~~L~~L~ls~N~l~~ 151 (365)
.+++|++|++++|+++. +|. .+..+++|+.|++++|.++. +|.. ..+..+++|+.||++.|.+..
T Consensus 86 ~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 89999999999999966 665 78899999999999999863 4442 012788999999999988764
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=1.4e-14 Score=120.13 Aligned_cols=107 Identities=18% Similarity=0.156 Sum_probs=89.2
Q ss_pred CEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeecc
Q 017800 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (365)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 121 (365)
+.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888886 6777664 78999999999999888888999999999999999999866666788999999999999
Q ss_pred ccccccCCCCCccCCCCccEEEcCCCcccCcc
Q 017800 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153 (365)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~ 153 (365)
++++..+..+ ..+++|+.|++++|++....
T Consensus 92 ~l~~l~~~~~--~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAF--DNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTT--TTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHh--ccccCCCEEEeCCCCccccc
Confidence 9976555445 78899999999999988653
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.58 E-value=1.8e-14 Score=118.99 Aligned_cols=108 Identities=22% Similarity=0.186 Sum_probs=94.0
Q ss_pred cccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCC
Q 017800 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH 87 (365)
Q Consensus 8 ~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 87 (365)
+.+.+++++|.++.++..-. ++|++|+|++|.|++..|..|..+++|++|+|++|+|++..+..|.+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~-----------~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP-----------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC-----------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEEeCCCCcCccCccCC-----------CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC
Confidence 35789999999988654322 2347889999999988899999999999999999999987777889999
Q ss_pred CCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccc
Q 017800 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126 (365)
Q Consensus 88 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 126 (365)
+|++|+|++|++++..+..|..+++|++|+|++|.+...
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999999999999997777899999999999999998643
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=9.4e-15 Score=143.16 Aligned_cols=125 Identities=24% Similarity=0.248 Sum_probs=104.9
Q ss_pred CcccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCC
Q 017800 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 86 (365)
..|+.|+|++|.|++++. +..+ ++|+.|+|++|.|+ .+|..|+.+++|+.|+|++|+|++ +| .++++
T Consensus 441 ~~L~~L~Ls~n~l~~lp~--~~~l--------~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l 507 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH--LEQL--------LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANL 507 (567)
T ss_dssp TTCSEEECTTSCCSSCCC--GGGG--------TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred cCceEEEecCCCCCCCcC--cccc--------ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCC
Confidence 358889999999987532 3333 44589999999999 889999999999999999999996 67 89999
Q ss_pred CCCCEEEccCCcCCCCC-ChhhcCCCCCcEEEeeccccccccCCCCC-ccCCCCccEEEc
Q 017800 87 HHLEVLNVGNNQINDNF-PNWLEILPELQVLILRSNRFWGPIGENTT-IVPFPSLRIIDL 144 (365)
Q Consensus 87 ~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~~~l~~L~~L~l 144 (365)
++|++|+|++|++++.. |..++.+++|+.|++++|.+++..|.... +..+++|+.|++
T Consensus 508 ~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999999999976 99999999999999999999877664321 134788988864
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=6.2e-14 Score=116.14 Aligned_cols=106 Identities=19% Similarity=0.165 Sum_probs=91.4
Q ss_pred ccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCC
Q 017800 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (365)
Q Consensus 9 L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 88 (365)
-+.+++++|.++.++..-. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|.++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~-----------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP-----------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC-----------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CcEEEeCCCCCCccCCCcC-----------CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 3689999999976654322 23478899999999888999999999999999999999766667899999
Q ss_pred CCEEEccCCcCCCCCChhhcCCCCCcEEEeecccccc
Q 017800 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125 (365)
Q Consensus 89 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 125 (365)
|++|+|++|+|++..+..|..+++|++|++++|.+..
T Consensus 83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred hhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9999999999998666679999999999999999853
No 136
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=3.1e-16 Score=154.83 Aligned_cols=138 Identities=20% Similarity=0.144 Sum_probs=81.5
Q ss_pred cCCcccEEEccCCCCCCcCC-------CCCCCCcEEECCCC----------------CCCCEEEccCCcCcccCCcCccC
Q 017800 5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN----------------LTHKVLDMRMNNFNGKIPRKFVK 61 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~-------~~~~~L~~L~ls~N----------------~~L~~L~Ls~N~l~~~~p~~~~~ 61 (365)
++++|++|++++|.+++..+ ..+++|++|++++| ++|++|++++|...+.+|..+..
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 46777788887777665432 35667777777766 67777777777222225555555
Q ss_pred CCCcCEEEccCCc--------------------------Ccc----CCCccCcCCCCCCEEEccCCcCCCCCC-hhhcCC
Q 017800 62 SCNLTSLNLNGNR--------------------------LEG----PLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEIL 110 (365)
Q Consensus 62 l~~L~~L~L~~N~--------------------------l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l 110 (365)
+++|+.|+++.+. +.. .+|..+..+++|++|++++|.+++... ..+..+
T Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~ 313 (594)
T 2p1m_B 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313 (594)
T ss_dssp CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence 6666666544331 111 122223356788888888888765322 234578
Q ss_pred CCCcEEEeeccccccccCCCCCccCCCCccEEEc
Q 017800 111 PELQVLILRSNRFWGPIGENTTIVPFPSLRIIDL 144 (365)
Q Consensus 111 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l 144 (365)
++|+.|++++| +.......+ ...+++|+.|++
T Consensus 314 ~~L~~L~l~~~-~~~~~l~~l-~~~~~~L~~L~L 345 (594)
T 2p1m_B 314 PKLQRLWVLDY-IEDAGLEVL-ASTCKDLRELRV 345 (594)
T ss_dssp TTCCEEEEEGG-GHHHHHHHH-HHHCTTCCEEEE
T ss_pred CCcCEEeCcCc-cCHHHHHHH-HHhCCCCCEEEE
Confidence 88888888887 332111111 023567777776
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=9.9e-14 Score=126.93 Aligned_cols=205 Identities=15% Similarity=0.072 Sum_probs=135.6
Q ss_pred CCcccEEEccCCCCC--CcCCCCCCCCcEEE----------CCC--------CCCCCEEEccCCcCcccCCcCccCCCCc
Q 017800 6 IATLYYLDLSNNFLT--NIEYFPPTNMTQLN----------FDS--------NLTHKVLDMRMNNFNGKIPRKFVKSCNL 65 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~--~~~~~~~~~L~~L~----------ls~--------N~~L~~L~Ls~N~l~~~~p~~~~~l~~L 65 (365)
+++|+.|||++|++. ......++.+..+. +.+ +++|+.|+|.+ .++...+.+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 678999999999998 22222222222222 223 46778888888 7776666778888888
Q ss_pred CEEEccCCcCccCCCccCcCCCCCCEEEccCCcC----CCC----------------------CCh--------------
Q 017800 66 TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI----NDN----------------------FPN-------------- 105 (365)
Q Consensus 66 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l----~~~----------------------~p~-------------- 105 (365)
+.+++++|.++...+.+|.++.++..+.+..+.. ... ++.
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 8888888888767777787777777776655221 000 000
Q ss_pred -------------hh-cCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhc-ccCCC
Q 017800 106 -------------WL-EILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM-HGNNI 170 (365)
Q Consensus 106 -------------~l-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~-~l~~~ 170 (365)
.+ ..+++|+.+++++|+++...+..| ..+.+|+.+++++| ++ .++...|.++.+|+ .+...
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF--~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF--AQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELP 282 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT--TTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEEC
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh--hCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEc
Confidence 00 127899999999999875444444 88999999999998 55 45555577777665 43331
Q ss_pred cccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhccccccccc
Q 017800 171 SVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 235 (365)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 235 (365)
. ....+....|..+++|+.|++++|+++...+.+|.++++|+.++
T Consensus 283 ~--------------------~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 283 A--------------------SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp T--------------------TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred c--------------------cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 0 12233445566678888888888888877777888888888765
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=6.4e-17 Score=137.19 Aligned_cols=142 Identities=19% Similarity=0.138 Sum_probs=112.9
Q ss_pred cCCcccEEEccCCCCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCc
Q 017800 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 84 (365)
....++.++++.+.+++..|. ++.+.. .+...++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+.
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~-l~~l~~-~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPP-IEKMDA-TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTT-CCCCHH-HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred hcccccCcchheeEeccccCc-HhhhhH-HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 456788889999999887652 111111 23333567999999999986 67 8999999999999999999 6788888
Q ss_pred CCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccC-CCCCccCCCCccEEEcCCCcccCccch
Q 017800 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG-ENTTIVPFPSLRIIDLSHNEFTGVLLT 155 (365)
Q Consensus 85 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~L~ls~N~l~~~~~~ 155 (365)
.+++|++|++++|++++ +| .+..+++|++|++++|++++..+ ..+ ..+++|++|++++|.+++.+|.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l--~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKL--AALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHH--TTTTTCSEEEECSCHHHHHHHT
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHH--hcCCCCCEEEecCCcccccccc
Confidence 88999999999999998 55 68889999999999999975322 233 7899999999999999877553
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.44 E-value=1.6e-15 Score=149.63 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=26.2
Q ss_pred hhheeeEEcCCCccccCCCh-hhhcccccccccCcCCCcc
Q 017800 204 LTIFMTIDLSSNKFQGGIPE-VVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 204 l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~L~ 242 (365)
+++|+.|+|++|.+++..+. .+..+++|+.|++++|+++
T Consensus 480 ~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 480 CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 56788888888888654443 3345777777777776654
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=3.2e-15 Score=139.02 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=109.0
Q ss_pred CCCCEEEccCCcCcccCCcCccC-----CCCcCEEEccCCcCccCCCccCc-CCCCCCEEEccCCcCCCCCChhh-----
Q 017800 39 LTHKVLDMRMNNFNGKIPRKFVK-----SCNLTSLNLNGNRLEGPLPPSLV-NCHHLEVLNVGNNQINDNFPNWL----- 107 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~l----- 107 (365)
+.|+.|+|++|.++......+.. ..+|++|+|++|.++......+. .+++|++|+|++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 67899999999988544333332 26899999999998754333332 35688999999999976544444
Q ss_pred cCCCCCcEEEeeccccccc----cCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCC
Q 017800 108 EILPELQVLILRSNRFWGP----IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS 183 (365)
Q Consensus 108 ~~l~~L~~L~L~~N~l~~~----~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 183 (365)
...++|+.|+|++|.++.. ++..+ ...++|++|+|++|.+++.....+...+.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L--~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~--------------------- 208 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGL--AGNTSVTHLSLLHTGLGDEGLELLAAQLD--------------------- 208 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHH--HTCSSCCEEECTTSSCHHHHHHHHHHHGG---------------------
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHH--hcCCCcCEEeCCCCCCCcHHHHHHHHHHh---------------------
Confidence 2467899999999998642 22222 56788999999999987542211111111
Q ss_pred CccceEEEEEeccccchhhhhhheeeEEcCCCccccC----CChhhhcccccccccCcCCCcc
Q 017800 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
..+.|++|||++|.|++. ++..+...++|++|+|++|.|+
T Consensus 209 -------------------~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 209 -------------------RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp -------------------GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred -------------------cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 135688999999999864 3344455677777666666654
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.42 E-value=7.5e-13 Score=121.89 Aligned_cols=107 Identities=18% Similarity=0.130 Sum_probs=81.6
Q ss_pred EEEccCC-cCcccCCcCccCCCCcCEEEccC-CcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeec
Q 017800 43 VLDMRMN-NFNGKIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (365)
Q Consensus 43 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 120 (365)
.++++++ .++ .+|. +..+++|+.|+|++ |+|++..+..|.++++|++|+|++|+|++..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577777 777 4777 88888888888885 888877777788888888888888888887777888888888888888
Q ss_pred cccccccCCCCCccCCCCccEEEcCCCcccCccc
Q 017800 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (365)
Q Consensus 121 N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~ 154 (365)
|+|++..+..+ ..++ |+.|+|++|.+...-.
T Consensus 90 N~l~~~~~~~~--~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTV--QGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTT--CSCC-CCEEECCSSCCCCCGG
T ss_pred CccceeCHHHc--ccCC-ceEEEeeCCCccCCCc
Confidence 88875544443 4444 8888888888875433
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.40 E-value=1.7e-13 Score=125.31 Aligned_cols=165 Identities=13% Similarity=0.116 Sum_probs=106.7
Q ss_pred CcCccC--------CCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeecccccccc
Q 017800 56 PRKFVK--------SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127 (365)
Q Consensus 56 p~~~~~--------l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 127 (365)
+.+|.+ +++|+.++|.+ .++..-+.+|.+|++|+.+++++|.++...+.+|..+.++..+.+..+......
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~ 164 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK 164 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc
Confidence 346777 89999999988 888667778999999999999999888777778888777776665542210000
Q ss_pred --CCCCCcc--------------------------------------------------CCCCccEEEcCCCcccCccch
Q 017800 128 --GENTTIV--------------------------------------------------PFPSLRIIDLSHNEFTGVLLT 155 (365)
Q Consensus 128 --~~~~~~~--------------------------------------------------~l~~L~~L~ls~N~l~~~~~~ 155 (365)
-....|. .+++|+.+++++|.++. +|.
T Consensus 165 ~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-I~~ 243 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-IPD 243 (329)
T ss_dssp TTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-ECT
T ss_pred ccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-ecH
Confidence 0000000 25678888888777763 444
Q ss_pred hhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhhee-eEEcCCCccccCCChhhhcccccccc
Q 017800 156 GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFM-TIDLSSNKFQGGIPEVVGKLNLLKGL 234 (365)
Q Consensus 156 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L 234 (365)
..|..+..|+.+.... ....+....|..+.+|+ .+++.+ .++...+.+|.++++|+.+
T Consensus 244 ~aF~~~~~L~~l~l~~--------------------ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPH--------------------NLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp TTTTTCTTCCEEECCT--------------------TCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred hhhhCCCCCCEEECCc--------------------ccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 5566666665544311 02233445555677777 788877 6665666777777777777
Q ss_pred cCcCCCccE
Q 017800 235 NISHNNLTV 243 (365)
Q Consensus 235 ~Ls~N~L~~ 243 (365)
++++|+++.
T Consensus 303 ~l~~n~i~~ 311 (329)
T 3sb4_A 303 LATGDKITT 311 (329)
T ss_dssp EECSSCCCE
T ss_pred EeCCCccCc
Confidence 766666653
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=3.2e-14 Score=132.26 Aligned_cols=147 Identities=20% Similarity=0.274 Sum_probs=113.9
Q ss_pred CCcccEEEccCCCCCCcCC--------CCCCCCcEEECCCC--------------CCCCEEEccCCcCcccCCcCc----
Q 017800 6 IATLYYLDLSNNFLTNIEY--------FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKF---- 59 (365)
Q Consensus 6 l~~L~~L~Ls~N~l~~~~~--------~~~~~L~~L~ls~N--------------~~L~~L~Ls~N~l~~~~p~~~---- 59 (365)
+++|+.|+|++|.++.... ...++|++|+|++| ++|+.|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4689999999999986533 24479999999999 679999999999986544444
Q ss_pred -cCCCCcCEEEccCCcCccC----CCccCcCCCCCCEEEccCCcCCCCC----ChhhcCCCCCcEEEeeccccccccCCC
Q 017800 60 -VKSCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDNF----PNWLEILPELQVLILRSNRFWGPIGEN 130 (365)
Q Consensus 60 -~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~~~~~~~ 130 (365)
...++|++|+|++|.|+.. ++..+..+++|++|+|++|.+++.. +..+...++|+.|+|++|.++......
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3468899999999999742 4455678899999999999997632 456677889999999999986432211
Q ss_pred C--CccCCCCccEEEcCCCcccCc
Q 017800 131 T--TIVPFPSLRIIDLSHNEFTGV 152 (365)
Q Consensus 131 ~--~~~~l~~L~~L~ls~N~l~~~ 152 (365)
+ .+...++|++|||++|.|++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 1 114568899999999998765
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=2.1e-12 Score=118.81 Aligned_cols=104 Identities=17% Similarity=0.108 Sum_probs=89.5
Q ss_pred cEEEccCC-CCCCcCCCCCCCCcEEECCCCCCCCEEEccC-CcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCC
Q 017800 10 YYLDLSNN-FLTNIEYFPPTNMTQLNFDSNLTHKVLDMRM-NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH 87 (365)
Q Consensus 10 ~~L~Ls~N-~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 87 (365)
..++++++ ++++++. +..+.. |+.|+|++ |.|++..+..|..+++|+.|+|++|+|++..|..|.+++
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~--------L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAEN--------LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSC--------CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred CEEEcCCCCCCCccCC--CCCCCC--------eeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence 35799998 8987543 555544 49999996 999988888999999999999999999999999999999
Q ss_pred CCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccc
Q 017800 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124 (365)
Q Consensus 88 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 124 (365)
+|++|+|++|+|++..+..+..++ |+.|+|.+|.+.
T Consensus 81 ~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 81 RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 999999999999986666666666 999999999985
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.23 E-value=1.3e-10 Score=108.95 Aligned_cols=187 Identities=10% Similarity=0.034 Sum_probs=103.9
Q ss_pred CCcEEECCCC-----------CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCC
Q 017800 29 NMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN 97 (365)
Q Consensus 29 ~L~~L~ls~N-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 97 (365)
+|+.+++..+ .+|+.+.+.. .++...+.+|.++.+|+.+++++|+++......|. +++|+.+.+.++
T Consensus 136 ~L~~i~l~~~i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~ 213 (401)
T 4fdw_A 136 QIAKVVLNEGLKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT 213 (401)
T ss_dssp CCSEEECCTTCCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT
T ss_pred CccEEEeCCCccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc
Confidence 4555555544 4567777764 55545556777777777777777777744444454 577777777643
Q ss_pred cCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCccccccc
Q 017800 98 QINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYM 177 (365)
Q Consensus 98 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~ 177 (365)
++.....+|.++++|+.+++..| ++..-...| .. .+|+.+++. +.++ .++...|..+++|+.+.......
T Consensus 214 -l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF--~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~--- 283 (401)
T 4fdw_A 214 -LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAF--RE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTF--- 283 (401)
T ss_dssp -CCEECTTTTTTCTTCCCEECCTT-CCEECTTTT--TT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCC---
T ss_pred -hheehhhHhhCCCCCCEEecCCC-ccCcccccc--cc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccc---
Confidence 65555567777777777777664 322222222 33 567777773 3343 23334466666555433200000
Q ss_pred CCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCC
Q 017800 178 TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239 (365)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 239 (365)
.. .....+....|..+.+|+.++|. +.++.....+|.++++|+.++|..|
T Consensus 284 ~~-----------~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 284 ND-----------DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp CC-----------CTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred cC-----------CcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 00 00001233444556677777776 3466555666777777776666433
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.17 E-value=2.5e-10 Score=106.97 Aligned_cols=150 Identities=12% Similarity=0.181 Sum_probs=108.2
Q ss_pred CcccEEEccCCCCCCcCC---CCCCCCcEEECCCC------------CCCCEEEccCCcCcccCCcCccCCCCcCEEEcc
Q 017800 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71 (365)
Q Consensus 7 ~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 71 (365)
.+|+.+++.. .++.+.. ..+++|+.+++++| .+|+.+.+..+ ++.....+|.++.+|+.+++.
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 3577777765 5555544 55677888888765 67888898854 776667789999999999998
Q ss_pred CCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccc----cccCCCCCccCCCCccEEEcCCC
Q 017800 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW----GPIGENTTIVPFPSLRIIDLSHN 147 (365)
Q Consensus 72 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~----~~~~~~~~~~~l~~L~~L~ls~N 147 (365)
.| ++..-..+|.+ .+|+.+.+ .+.++...+.+|.++++|+.+++.+|.+. ..++.. .|..+++|+.+++..
T Consensus 235 ~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~-aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY-CLEGCPKLARFEIPE- 309 (401)
T ss_dssp TT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT-TTTTCTTCCEECCCT-
T ss_pred CC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHH-HhhCCccCCeEEeCC-
Confidence 75 56556667777 89999999 45577766788999999999999988764 123322 348899999999984
Q ss_pred cccCccchhhhhhhhhh
Q 017800 148 EFTGVLLTGYLDNFKAM 164 (365)
Q Consensus 148 ~l~~~~~~~~~~~l~~L 164 (365)
.++ .++...|.++.+|
T Consensus 310 ~i~-~I~~~aF~~c~~L 325 (401)
T 4fdw_A 310 SIR-ILGQGLLGGNRKV 325 (401)
T ss_dssp TCC-EECTTTTTTCCSC
T ss_pred ceE-EEhhhhhcCCCCc
Confidence 455 3343445544433
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=2.9e-10 Score=104.92 Aligned_cols=144 Identities=20% Similarity=0.228 Sum_probs=95.6
Q ss_pred CCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhc--CCCCCcEEEeec--cccccc----
Q 017800 55 IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE--ILPELQVLILRS--NRFWGP---- 126 (365)
Q Consensus 55 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~--N~l~~~---- 126 (365)
++..+..+++|+.|+|++|.-. .++. +. +++|++|++..+.++......+. .+++|+.|+|+. |...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4455677899999999988412 2333 43 88999999999888654334444 689999999863 222111
Q ss_pred -cCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhh
Q 017800 127 -IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILT 205 (365)
Q Consensus 127 -~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (365)
+...+....+++|+.|++++|.+++..+..++. .+ .++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-a~----------------------------------------~~~ 279 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE-SD----------------------------------------ILP 279 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH-CS----------------------------------------SGG
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh-Cc----------------------------------------cCC
Confidence 011121135799999999999887543322111 00 157
Q ss_pred heeeEEcCCCccccCC----ChhhhcccccccccCcCCCcc
Q 017800 206 IFMTIDLSSNKFQGGI----PEVVGKLNLLKGLNISHNNLT 242 (365)
Q Consensus 206 ~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~L~ 242 (365)
+|++|||+.|.+++.. +..+..+++|+.|+|++|.|+
T Consensus 280 ~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 8999999999998753 334456788888888888776
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=3.2e-09 Score=97.91 Aligned_cols=155 Identities=18% Similarity=0.169 Sum_probs=88.8
Q ss_pred CccCCCCcCEEEccCCcCc---------cCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccC
Q 017800 58 KFVKSCNLTSLNLNGNRLE---------GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128 (365)
Q Consensus 58 ~~~~l~~L~~L~L~~N~l~---------~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 128 (365)
+...+++|+.|.+.++... +.++..+..+++|+.|++++|.-.. ++. + .+++|+.|++..+.+.....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHH
Confidence 3445677888877654321 1233344566778888887763111 232 3 26777888877776643222
Q ss_pred CCCCccCCCCccEEEcCC--CcccCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhh
Q 017800 129 ENTTIVPFPSLRIIDLSH--NEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTI 206 (365)
Q Consensus 129 ~~~~~~~l~~L~~L~ls~--N~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 206 (365)
..+....+++|+.|+|+. |...+... +..+..+.. ...+++
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~---~~~l~~~l~----------------------------------~~~~p~ 253 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGD---MNVFRPLFS----------------------------------KDRFPN 253 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSC---GGGTGGGSC----------------------------------TTTCTT
T ss_pred HHHHHccCCCCcEEEEeccccccccchh---HHHHHHHHh----------------------------------cCCCCC
Confidence 222112567777777753 22111100 111111000 011578
Q ss_pred eeeEEcCCCccccCCChhhh---cccccccccCcCCCcc------------------EEECccCccc
Q 017800 207 FMTIDLSSNKFQGGIPEVVG---KLNLLKGLNISHNNLT------------------VLNLSYNQFE 252 (365)
Q Consensus 207 L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~L~------------------~L~ls~N~l~ 252 (365)
|+.|+|++|.+.+..+..+. .++.|++|+|+.|.|+ .|++++|.++
T Consensus 254 Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred cCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 99999999999866555554 5788999999988776 6777777665
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.67 E-value=1.1e-09 Score=91.23 Aligned_cols=116 Identities=15% Similarity=0.145 Sum_probs=85.0
Q ss_pred CCCCCCCEEEccCC-cCccc----CCcCccCCCCcCEEEccCCcCccC----CCccCcCCCCCCEEEccCCcCCCC----
Q 017800 36 DSNLTHKVLDMRMN-NFNGK----IPRKFVKSCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDN---- 102 (365)
Q Consensus 36 s~N~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~---- 102 (365)
..++.|+.|+|++| .+... +...+...++|++|+|++|.|+.. +...+...++|++|+|++|.|++.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34577889999998 88742 445566778999999999998743 344556678899999999999764
Q ss_pred CChhhcCCCCCcEEEe--eccccccccCCCC--CccCCCCccEEEcCCCcccC
Q 017800 103 FPNWLEILPELQVLIL--RSNRFWGPIGENT--TIVPFPSLRIIDLSHNEFTG 151 (365)
Q Consensus 103 ~p~~l~~l~~L~~L~L--~~N~l~~~~~~~~--~~~~l~~L~~L~ls~N~l~~ 151 (365)
+...+...++|++|+| ++|.+.......+ .+...++|+.|++++|.+..
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 3455667789999999 8898864321111 12456889999999998863
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=1.6e-08 Score=84.18 Aligned_cols=116 Identities=18% Similarity=0.142 Sum_probs=81.3
Q ss_pred cCCcccEEEccCC-CCCCcCCCCCCCCcEEECCCCCCCCEEEccCCcCccc----CCcCccCCCCcCEEEccCCcCccC-
Q 017800 5 GIATLYYLDLSNN-FLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK----IPRKFVKSCNLTSLNLNGNRLEGP- 78 (365)
Q Consensus 5 ~l~~L~~L~Ls~N-~l~~~~~~~~~~L~~L~ls~N~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~- 78 (365)
..++|++|+|++| .++...... +.. -+..|++|++|+|++|.++.. +...+...+.|++|+|++|.|+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~---l~~-~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKA---CAE-ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHH---HHH-HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHH---HHH-HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 3567788888887 776432100 000 122235678889999998743 344455668899999999999853
Q ss_pred ---CCccCcCCCCCCEEEc--cCCcCCCCC----ChhhcCCCCCcEEEeeccccc
Q 017800 79 ---LPPSLVNCHHLEVLNV--GNNQINDNF----PNWLEILPELQVLILRSNRFW 124 (365)
Q Consensus 79 ---~p~~l~~l~~L~~L~L--~~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~ 124 (365)
+...+...++|++|+| ++|.++... ...+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4567778889999999 889997643 344556689999999999884
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.56 E-value=2.7e-09 Score=93.70 Aligned_cols=66 Identities=23% Similarity=0.310 Sum_probs=34.0
Q ss_pred CCCCCCEEEccCCcCCC--CCChhhcCCCCCcEEEeeccccccccCCCC-CccCCCCccEEEcCCCcccCcc
Q 017800 85 NCHHLEVLNVGNNQIND--NFPNWLEILPELQVLILRSNRFWGPIGENT-TIVPFPSLRIIDLSHNEFTGVL 153 (365)
Q Consensus 85 ~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~~~l~~L~~L~ls~N~l~~~~ 153 (365)
++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|++.+.. .+ .+..+ +|++|+|++|++.+..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l~~l~~l-~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER--ELDKIKGL-KLEELWLDGNSLCDTF 236 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG--GGGGGTTS-CCSEEECTTSTTGGGC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch--hhhhcccC-CcceEEccCCcCcccc
Confidence 34555666666666555 22344455566666666666654431 11 01222 6666666666666543
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.52 E-value=5.1e-08 Score=85.55 Aligned_cols=111 Identities=22% Similarity=0.297 Sum_probs=71.3
Q ss_pred cEEECCCC---CCCCE--EEccCCcCc---ccCCcCccCCCCcCEEEccCCcCcc--CCCccCcCCCCCCEEEccCCcCC
Q 017800 31 TQLNFDSN---LTHKV--LDMRMNNFN---GKIPRKFVKSCNLTSLNLNGNRLEG--PLPPSLVNCHHLEVLNVGNNQIN 100 (365)
Q Consensus 31 ~~L~ls~N---~~L~~--L~Ls~N~l~---~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~ 100 (365)
+.||++.- +.|.. ++++.|... +.++-....+++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|+
T Consensus 130 ~~LdLs~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 130 QALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp TEEECTTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred cccCHHHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 34565543 33333 566666432 2222222457788888888888886 34566667888888888888888
Q ss_pred CCCChhhcCCC--CCcEEEeeccccccccCCC-----CCccCCCCccEEE
Q 017800 101 DNFPNWLEILP--ELQVLILRSNRFWGPIGEN-----TTIVPFPSLRIID 143 (365)
Q Consensus 101 ~~~p~~l~~l~--~L~~L~L~~N~l~~~~~~~-----~~~~~l~~L~~L~ 143 (365)
+. ..+..+. +|+.|+|++|.+.+.+|.. ..+..+++|+.||
T Consensus 210 ~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 210 SE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred Cc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 74 3344444 8888888888887765531 0125678888876
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.31 E-value=5.1e-06 Score=77.40 Aligned_cols=39 Identities=10% Similarity=-0.050 Sum_probs=24.2
Q ss_pred cchhhhhhheeeEEcCCCccccCCChhhhcccccccccCc
Q 017800 198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237 (365)
Q Consensus 198 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 237 (365)
...+..+.+|+.+.+..+ ++.....+|.++++|+.+++.
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred cccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence 344445667777777654 554555667777777776665
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.23 E-value=9.5e-06 Score=75.59 Aligned_cols=200 Identities=12% Similarity=0.111 Sum_probs=121.1
Q ss_pred cCCcccEEEccCCCCCCcCC---CCCCCCcEEECCCC------------CCCCEEEccCCcCcccCCcCccCCCCcCEEE
Q 017800 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (365)
Q Consensus 5 ~l~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~ls~N------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 69 (365)
++++|+.+.+.++- ..+.. ..+.+|+.+++..+ ..|+.+.+..+... +...+....+|+.+.
T Consensus 160 ~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ 236 (394)
T 4fs7_A 160 TCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNII 236 (394)
T ss_dssp TCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEE
T ss_pred ccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEE
Confidence 67889999997653 33333 45677877777665 45666665554332 223344456777777
Q ss_pred ccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeeccccccccCCCCCccCCCCccEEEcCCCcc
Q 017800 70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (365)
Q Consensus 70 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l 149 (365)
+.... +..-...+.++..|+.+.+..+... .....|..+..++.+....+.+ ++ ..|..+.+|+.+.+..+ +
T Consensus 237 ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i----~~-~~F~~~~~L~~i~l~~~-i 308 (394)
T 4fs7_A 237 IPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV----PE-KTFYGCSSLTEVKLLDS-V 308 (394)
T ss_dssp ECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE----CT-TTTTTCTTCCEEEECTT-C
T ss_pred ECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee----cc-ccccccccccccccccc-c
Confidence 76443 3244557788888888888776543 3556777888888887766543 22 22367788888888654 3
Q ss_pred cCccchhhhhhhhhhcccCCCcccccccCCCCCCCccceEEEEEeccccchhhhhhheeeEEcCCCccccCCChhhhccc
Q 017800 150 TGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN 229 (365)
Q Consensus 150 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 229 (365)
+ .++...+.++.+|+.+...+ ....+....|..+.+|+.+++..| ++.....+|.+++
T Consensus 309 ~-~I~~~aF~~c~~L~~i~lp~--------------------~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 309 K-FIGEEAFESCTSLVSIDLPY--------------------LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp C-EECTTTTTTCTTCCEECCCT--------------------TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred c-eechhhhcCCCCCCEEEeCC--------------------cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 3 33444466666665443300 012223344555677777777665 5545566777777
Q ss_pred ccccccCc
Q 017800 230 LLKGLNIS 237 (365)
Q Consensus 230 ~L~~L~Ls 237 (365)
+|+.+++.
T Consensus 367 ~L~~i~lp 374 (394)
T 4fs7_A 367 NLKKVELP 374 (394)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEEC
Confidence 77766554
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=7.6e-07 Score=72.70 Aligned_cols=84 Identities=12% Similarity=0.033 Sum_probs=54.9
Q ss_pred CCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCc-CCCCCChhhcCC----CCCcEEEeeccc-cccccCCCCCccCC
Q 017800 63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEIL----PELQVLILRSNR-FWGPIGENTTIVPF 136 (365)
Q Consensus 63 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l----~~L~~L~L~~N~-l~~~~~~~~~~~~l 136 (365)
.+|++||++++.++..--..+.++++|++|+|++|. +++..-..+..+ ++|+.|++++|. ++..--..+ ..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L--~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL--HHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG--GGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH--hcC
Confidence 467788888777765444556777888888888874 665333344443 368888888874 553322223 567
Q ss_pred CCccEEEcCCCc
Q 017800 137 PSLRIIDLSHNE 148 (365)
Q Consensus 137 ~~L~~L~ls~N~ 148 (365)
++|+.|+++++.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 888888888775
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.02 E-value=6.5e-05 Score=69.87 Aligned_cols=41 Identities=10% Similarity=-0.046 Sum_probs=21.8
Q ss_pred cchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCC
Q 017800 198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239 (365)
Q Consensus 198 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 239 (365)
...|..+.+|+.+.+..+ ++.....+|.++++|+.+++.+|
T Consensus 327 ~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 344445566666666433 44344455666666665555443
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.00 E-value=0.00011 Score=68.30 Aligned_cols=45 Identities=16% Similarity=0.111 Sum_probs=26.0
Q ss_pred eccccchhhhhhheeeEEcCCCccccCCChhhhcccccccccCcCCCc
Q 017800 194 KGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL 241 (365)
Q Consensus 194 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~L 241 (365)
..+....|..+.+|+.+++.++.... ..+....+|+.+.+..|.+
T Consensus 346 ~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 346 TKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 44556677789999999999986542 4566778888887766654
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=1.8e-06 Score=70.46 Aligned_cols=83 Identities=11% Similarity=-0.001 Sum_probs=64.3
Q ss_pred CCCEEEccCCcCcccCCcCccCCCCcCEEEccCCc-CccCCCccCcCC----CCCCEEEccCCc-CCCCCChhhcCCCCC
Q 017800 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR-LEGPLPPSLVNC----HHLEVLNVGNNQ-INDNFPNWLEILPEL 113 (365)
Q Consensus 40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l----~~L~~L~L~~N~-l~~~~p~~l~~l~~L 113 (365)
.|+.||++++.++..--..+..+++|++|+|++|. |+..--..+..+ ++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45888999998886655667889999999999995 764333345553 479999999975 877555667789999
Q ss_pred cEEEeeccc
Q 017800 114 QVLILRSNR 122 (365)
Q Consensus 114 ~~L~L~~N~ 122 (365)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999875
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.68 E-value=4.2e-06 Score=69.61 Aligned_cols=113 Identities=12% Similarity=0.099 Sum_probs=78.6
Q ss_pred CCCCCCCEEEccCC-cCcc----cCCcCccCCCCcCEEEccCCcCccC----CCccCcCCCCCCEEEccCCcCCCCCC--
Q 017800 36 DSNLTHKVLDMRMN-NFNG----KIPRKFVKSCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDNFP-- 104 (365)
Q Consensus 36 s~N~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p-- 104 (365)
.+|+.|+.|+|++| .|.. .+..++..-+.|+.|+|++|+|... +...+...+.|++|+|++|.|++...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44578899999985 7763 2445566778899999999999843 33445567889999999999976433
Q ss_pred --hhhcCCCCCcEEEeecc---ccccc----cCCCCCccCCCCccEEEcCCCccc
Q 017800 105 --NWLEILPELQVLILRSN---RFWGP----IGENTTIVPFPSLRIIDLSHNEFT 150 (365)
Q Consensus 105 --~~l~~l~~L~~L~L~~N---~l~~~----~~~~~~~~~l~~L~~L~ls~N~l~ 150 (365)
..+..-+.|+.|+|++| .+... +.+.+ ..-+.|+.|+++.|.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL--~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI--EENESLLRVGISFASME 170 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH--HHCSSCCEEECCCCCHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHH--HhCCCcCeEeccCCCcc
Confidence 34445567999999865 33211 22222 45678999999887654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.54 E-value=0.0018 Score=59.61 Aligned_cols=33 Identities=6% Similarity=0.034 Sum_probs=20.3
Q ss_pred hhheeeEEcCCCccccCCChhhhcccccccccCc
Q 017800 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237 (365)
Q Consensus 204 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 237 (365)
+.+|+.++|..+ ++.....+|.++++|+.+.+.
T Consensus 309 c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 309 CVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred CCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 455666666543 554455667777777766654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.46 E-value=4.7e-05 Score=63.24 Aligned_cols=86 Identities=13% Similarity=0.057 Sum_probs=61.8
Q ss_pred CCCCCEEEccCCcCcccC----CcCccCCCCcCEEEccCCcCccC----CCccCcCCCCCCEEEccCC---cCCCC----
Q 017800 38 NLTHKVLDMRMNNFNGKI----PRKFVKSCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNN---QINDN---- 102 (365)
Q Consensus 38 N~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N---~l~~~---- 102 (365)
|+.|+.|+|++|.|.... ...+..-+.|++|+|+.|.|+.. +.+++..-+.|++|+|++| .+...
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 367789999999997433 33344567899999999999843 3446667788999999875 33332
Q ss_pred CChhhcCCCCCcEEEeecccc
Q 017800 103 FPNWLEILPELQVLILRSNRF 123 (365)
Q Consensus 103 ~p~~l~~l~~L~~L~L~~N~l 123 (365)
+...+..-+.|+.|+++.|.+
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCCcCeEeccCCCc
Confidence 234455668899999988765
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.41 E-value=0.0016 Score=59.90 Aligned_cols=124 Identities=13% Similarity=0.037 Sum_probs=73.2
Q ss_pred CCCCEEEccCCcCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEe
Q 017800 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (365)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 118 (365)
..|+.+.+..+ +......+|.++..|+.+.+..+ ++..-..+|.++.+|+.+.+..+ ++.....+|..+.+|+.+.+
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence 45566666443 33344456667777777777655 44344556777777777777543 44434456677777777777
Q ss_pred eccccccccCCCCCccCCCCccEEEcCCCcccCccchhhhhhhhhhcccCC
Q 017800 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN 169 (365)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~l~~L~~l~~ 169 (365)
.++.++..-...| .++.+|+.+++..+ ++ .++...|.++.+|+.+..
T Consensus 294 ~~~~i~~I~~~aF--~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 294 DNSAIETLEPRVF--MDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CCTTCCEECTTTT--TTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCC
T ss_pred cccccceehhhhh--cCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEE
Confidence 7666643333333 66777777777644 33 333344666666655443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.13 E-value=0.00088 Score=51.75 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=13.9
Q ss_pred CCEEEccCCcCCCCCChhhcCCCCCcEEEeecc
Q 017800 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (365)
Q Consensus 89 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 121 (365)
|++|+|++|+|+...+..|..+++|++|+|++|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 444444444444433333334444444444443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.08 E-value=0.0012 Score=51.08 Aligned_cols=58 Identities=24% Similarity=0.327 Sum_probs=44.4
Q ss_pred CEEEccCCcCc-ccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccCCcCCC
Q 017800 42 KVLDMRMNNFN-GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND 101 (365)
Q Consensus 42 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 101 (365)
..++.+++.++ ..+|..+. .+|++|+|++|+|+...+..|..+++|+.|+|++|.+.-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 46788888886 35564432 468899999999997666778889999999999998853
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.59 E-value=27 Score=24.76 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=23.9
Q ss_pred CccCCCccCcCCCCCCEEEccCCcCCCCCChhhcCCCCCcEEEeecc
Q 017800 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (365)
Q Consensus 75 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 121 (365)
++..-..+|.+|++|+.+.+-.+ ++..-..+|.+|.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 33333445555666666555543 33334455666666666666543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.44 E-value=14 Score=26.27 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=31.2
Q ss_pred cCcccCCcCccCCCCcCEEEccCCcCccCCCccCcCCCCCCEEEccC
Q 017800 50 NFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGN 96 (365)
Q Consensus 50 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 96 (365)
.++..-..+|.++.+|+.+.+-.+ ++..-..+|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 445445567777888888877764 4434556777888888887765
Done!