BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017801
         (365 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q57883|Y441_METJA UPF0721 transmembrane protein MJ0441 OS=Methanocaldococcus
           jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
           10045 / NBRC 100440) GN=MJ0441 PE=3 SV=1
          Length = 267

 Score = 34.3 bits (77), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%)

Query: 229 GVLAGIVGGLLGLGGGFIMGP----LFLELGVPPQVSSATAT--FAMTFSSSMSVVEYYL 282
           G + GI+G L G+GGGF++ P    +F   G+P  V  A  T  F +  +S +S+  +  
Sbjct: 20  GFIVGILGSLFGIGGGFLVAPILTFIFDYFGIPDGVKFAVGTSLFVVFINSIISIFRHAK 79

Query: 283 LKR 285
           +K 
Sbjct: 80  IKN 82


>sp|O34430|YTNM_BACSU UPF0721 transmembrane protein YtnM OS=Bacillus subtilis (strain
           168) GN=ytnM PE=3 SV=1
          Length = 300

 Score = 33.5 bits (75), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 42/92 (45%)

Query: 221 QLVSYCAFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEY 280
           +L+ +   G+L+ ++ G LG+  G     L L  G+ P V+SA+   A   +++ S V +
Sbjct: 3   KLIVFAFIGLLSQLIDGSLGMAYGVTSTSLLLAFGITPAVASASVHLAEVVTTAASGVSH 62

Query: 281 YLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 312
                         V   +I AF+G   + +L
Sbjct: 63  IKFGNVDKQTVYQLVIPGSIGAFLGAAFLSQL 94


>sp|P42726|TFXD_RHILT Trifolitoxin-processing protein TfxD OS=Rhizobium leguminosarum bv.
           trifolii GN=tfxD PE=4 SV=1
          Length = 416

 Score = 32.7 bits (73), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 209 SKGDDGKSFRVFQLVSYCAFGV---LAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATA 265
           +K D GK       ++Y A GV   LA ++G +  L    ++GPLFL + +P  V S TA
Sbjct: 352 AKADGGK-LTHLSAIAYLASGVILALAAVLGSVQALAIALVLGPLFLAISIPA-VQSRTA 409

Query: 266 TFAM 269
             A+
Sbjct: 410 LNAL 413


>sp|E3Q4R4|M28P1_COLGM Probable zinc metalloprotease GLRG_01223 OS=Colletotrichum
           graminicola (strain M1.001 / M2 / FGSC 10212)
           GN=GLRG_01223 PE=3 SV=1
          Length = 1034

 Score = 32.7 bits (73), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 15/80 (18%)

Query: 267 FAMTFSSSMSVVEYYLLKR------FPVPYA-------LYFVAVATIAAFVGQHVVRKLI 313
           FA+  S+S++V+  +L++R      +  PYA       L+F+   TIA   G  VVR   
Sbjct: 475 FALVLSASITVLSAFLIRRVNPHIIYSSPYAVWAMTLSLFFLVFWTIAK--GASVVRPSA 532

Query: 314 ILLGRASLIIFILAFMIFVS 333
           +  G A + +F+++++I V+
Sbjct: 533 LQRGYAHIWLFVISWVILVA 552


>sp|P54437|YRKJ_BACSU UPF0721 transmembrane protein YrkJ OS=Bacillus subtilis (strain
           168) GN=yrkJ PE=3 SV=1
          Length = 261

 Score = 32.3 bits (72), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 14/116 (12%)

Query: 207 IASKGDDGKSFR-----VFQ--LVSYCAFGVLAGIVGGLLGLGGGFIMGPLFLE-LGVPP 258
           I  KG  G+        +F   L S  AF  + G V G+LG GG FI+ P+ L  L +P 
Sbjct: 125 IPKKGQKGQEHSEDKEVIFNKWLASSLAF--IIGGVSGILGAGGAFILVPIMLSILNIPV 182

Query: 259 QVSSATATFAMTFSSSM--SVVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 312
           +V+ A+ + A+TF SS+  +V +    +   VP AL  +  + IA+ +G  V +K+
Sbjct: 183 RVTVAS-SLAITFLSSIGATVGKVITGQVLFVP-ALVLMITSLIASPIGASVGQKV 236


>sp|O05229|MRPD_BACSU Na(+)/H(+) antiporter subunit D OS=Bacillus subtilis (strain 168)
           GN=mrpD PE=1 SV=3
          Length = 493

 Score = 32.0 bits (71), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 280 YYLLKRFPVPYALYFVAVATIAAFVGQHVVRKLIILLGRASLIIFILAFMIFVSAISLGG 339
           YYL+    +  AL+ +A  T+ A  G   + K+  L+ R      +L +M F+SAISL G
Sbjct: 328 YYLIHDMLIKGALFMLA-GTLIALTGTASLHKMGGLIKRYP----VLGWMFFISAISLAG 382

Query: 340 V-GISNMIGKFHRHE 353
           +  +S  +GKF   E
Sbjct: 383 IPPLSGFVGKFKIAE 397


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.143    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,460,685
Number of Sequences: 539616
Number of extensions: 5321663
Number of successful extensions: 17618
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 17601
Number of HSP's gapped (non-prelim): 41
length of query: 365
length of database: 191,569,459
effective HSP length: 119
effective length of query: 246
effective length of database: 127,355,155
effective search space: 31329368130
effective search space used: 31329368130
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)