Query 017801
Match_columns 365
No_of_seqs 329 out of 1731
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:33:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0730 Predicted permeases [G 99.9 1.7E-20 3.6E-25 176.8 22.2 202 4-327 42-245 (258)
2 PRK10621 hypothetical protein; 99.9 8.4E-21 1.8E-25 179.8 19.8 198 4-326 46-244 (266)
3 PF01925 TauE: Sulfite exporte 99.8 1.8E-19 3.9E-24 167.3 16.8 199 4-327 32-235 (240)
4 PRK10621 hypothetical protein; 99.5 1.9E-13 4.2E-18 129.5 15.6 106 221-327 11-116 (266)
5 COG0730 Predicted permeases [G 99.5 6.1E-13 1.3E-17 125.3 15.3 107 221-327 6-112 (258)
6 PF01925 TauE: Sulfite exporte 99.3 3.8E-11 8.2E-16 111.4 12.4 101 226-327 2-102 (240)
7 PRK11469 hypothetical protein; 83.3 34 0.00074 30.7 19.4 50 41-91 40-89 (188)
8 PF02673 BacA: Bacitracin resi 78.5 61 0.0013 30.6 15.9 90 237-326 158-253 (259)
9 KOG2881 Predicted membrane pro 72.1 21 0.00046 33.8 8.0 62 37-98 98-159 (294)
10 PTZ00370 STEVOR; Provisional 70.5 8.1 0.00018 36.9 5.1 47 53-99 242-291 (296)
11 TIGR02840 spore_YtaF putative 64.2 1.1E+02 0.0025 27.7 16.3 53 40-92 32-84 (206)
12 PF04018 DUF368: Domain of unk 61.9 1.5E+02 0.0032 28.2 20.9 87 222-329 142-228 (257)
13 TIGR01478 STEVOR variant surfa 61.7 7.7 0.00017 37.0 3.1 46 53-98 246-294 (295)
14 COG3619 Predicted membrane pro 60.5 29 0.00062 32.2 6.6 70 6-76 135-205 (226)
15 PF11368 DUF3169: Protein of u 57.2 1.7E+02 0.0036 27.3 16.9 26 41-66 8-33 (248)
16 PF01169 UPF0016: Uncharacteri 52.5 51 0.0011 25.2 5.8 36 289-324 38-73 (78)
17 PF11169 DUF2956: Protein of u 51.6 90 0.0019 25.2 7.1 17 144-163 83-99 (103)
18 PRK10420 L-lactate permease; P 49.3 2E+02 0.0044 30.4 11.4 44 227-270 121-165 (551)
19 PF04066 MrpF_PhaF: Multiple r 47.9 96 0.0021 21.8 6.4 52 259-310 3-54 (55)
20 TIGR00908 2A0305 ethanolamine 46.0 94 0.002 31.2 8.3 12 27-38 369-380 (442)
21 PRK00281 undecaprenyl pyrophos 45.2 2.8E+02 0.006 26.4 21.6 87 239-325 164-255 (268)
22 PF12794 MscS_TM: Mechanosensi 43.2 3.3E+02 0.0072 26.7 16.1 50 42-91 200-251 (340)
23 PF13829 DUF4191: Domain of un 42.7 1.2E+02 0.0026 28.1 7.6 56 25-88 16-71 (224)
24 PRK09695 glycolate transporter 41.8 3E+02 0.0064 29.2 11.3 44 227-270 121-165 (560)
25 COG4280 Predicted membrane pro 37.8 45 0.00098 30.4 3.9 32 64-95 59-90 (236)
26 PRK10263 DNA translocase FtsK; 37.2 6.6E+02 0.014 29.6 13.6 17 226-242 66-82 (1355)
27 PF09775 Keratin_assoc: Kerati 35.8 1.7E+02 0.0036 24.8 6.7 46 8-62 2-47 (131)
28 COG1971 Predicted membrane pro 35.4 1.1E+02 0.0025 27.5 6.1 47 45-92 44-90 (190)
29 COG2119 Predicted membrane pro 35.2 3.4E+02 0.0074 24.5 15.4 78 8-88 3-84 (190)
30 COG5336 Uncharacterized protei 34.9 1.8E+02 0.0039 23.9 6.5 37 41-77 45-83 (116)
31 PF11833 DUF3353: Protein of u 34.6 2.3E+02 0.0051 25.5 8.1 28 41-68 139-166 (194)
32 PRK11281 hypothetical protein; 34.0 8E+02 0.017 28.4 28.7 49 43-91 689-739 (1113)
33 PRK11387 S-methylmethionine tr 33.7 1.2E+02 0.0026 30.9 6.8 13 77-89 445-457 (471)
34 PF02652 Lactate_perm: L-lacta 32.9 6E+02 0.013 26.7 19.0 41 229-269 108-149 (522)
35 COG1620 LldP L-lactate permeas 32.4 85 0.0018 32.7 5.4 89 224-312 104-204 (522)
36 PF05052 MerE: MerE protein; 32.2 1.4E+02 0.0029 22.7 5.0 31 52-85 38-68 (75)
37 TIGR02230 ATPase_gene1 F0F1-AT 32.0 1.6E+02 0.0035 23.7 5.9 20 295-314 53-72 (100)
38 PRK01844 hypothetical protein; 31.8 1.3E+02 0.0028 22.8 4.9 26 293-318 9-34 (72)
39 PF03596 Cad: Cadmium resistan 31.7 3.9E+02 0.0084 24.1 10.9 35 53-87 40-74 (191)
40 COG3180 AbrB Putative ammonia 31.7 5.3E+02 0.011 25.6 11.0 28 221-248 10-37 (352)
41 TIGR00795 lctP L-lactate trans 31.6 6.3E+02 0.014 26.5 15.4 44 227-270 112-156 (530)
42 COG1113 AnsP Gamma-aminobutyra 30.5 6E+02 0.013 26.2 11.0 113 51-212 341-462 (462)
43 COG3366 Uncharacterized protei 30.0 5.3E+02 0.012 25.2 15.1 71 244-314 40-111 (311)
44 PRK12585 putative monovalent c 29.9 2.3E+02 0.005 25.6 7.0 18 294-311 73-90 (197)
45 PRK03554 tatA twin arginine tr 29.2 1.9E+02 0.0041 22.8 5.6 29 67-96 7-41 (89)
46 PF11351 DUF3154: Protein of u 28.3 1.5E+02 0.0033 24.6 5.4 54 37-90 62-119 (123)
47 PF11188 DUF2975: Protein of u 27.7 3.3E+02 0.0072 22.0 9.6 26 22-47 44-69 (136)
48 TIGR02230 ATPase_gene1 F0F1-AT 27.3 1.9E+02 0.0041 23.3 5.5 23 46-68 50-72 (100)
49 PF09527 ATPase_gene1: Putativ 25.5 2.4E+02 0.0051 19.6 6.2 26 43-68 5-30 (55)
50 PF11990 DUF3487: Protein of u 25.3 4E+02 0.0086 22.2 8.4 42 29-70 11-52 (121)
51 PF01169 UPF0016: Uncharacteri 25.1 1.8E+02 0.0039 22.1 4.9 41 40-80 35-75 (78)
52 TIGR00910 2A0307_GadC glutamat 24.8 2.7E+02 0.0059 28.8 7.7 12 27-38 384-395 (507)
53 COG1968 BacA Undecaprenyl pyro 24.6 6.2E+02 0.014 24.2 19.2 74 252-325 178-256 (270)
54 PRK00523 hypothetical protein; 23.9 2.1E+02 0.0046 21.6 4.8 25 294-318 11-35 (72)
55 PF11044 TMEMspv1-c74-12: Plec 23.7 1.4E+02 0.0029 20.4 3.4 26 179-204 4-29 (49)
56 PF11947 DUF3464: Protein of u 23.6 2.2E+02 0.0048 24.8 5.7 50 185-246 70-119 (153)
57 TIGR00911 2A0308 L-type amino 23.5 2.3E+02 0.005 29.0 6.9 12 27-38 411-422 (501)
58 PF11368 DUF3169: Protein of u 23.4 3.9E+02 0.0084 24.8 7.8 25 288-312 9-33 (248)
59 PF03741 TerC: Integral membra 23.1 2.9E+02 0.0062 24.6 6.6 50 37-89 31-80 (183)
60 COG4060 MtrD Tetrahydromethano 22.9 2.2E+02 0.0047 25.4 5.5 46 225-270 133-178 (230)
61 PF03594 BenE: Benzoate membra 22.8 4.7E+02 0.01 26.2 8.5 77 11-90 257-336 (378)
62 TIGR03750 conj_TIGR03750 conju 22.5 4.4E+02 0.0095 21.6 8.0 42 30-71 9-50 (111)
63 PRK13453 F0F1 ATP synthase sub 22.4 3.4E+02 0.0073 23.7 6.8 44 53-96 9-52 (173)
64 PF07698 7TM-7TMR_HD: 7TM rece 21.9 5.4E+02 0.012 22.5 16.7 54 249-314 73-126 (194)
65 PRK12600 putative monovalent c 21.5 4.2E+02 0.009 21.0 7.2 53 258-310 31-83 (94)
66 TIGR03813 put_Glu_GABA_T putat 21.2 2.4E+02 0.0052 28.6 6.5 37 27-63 381-420 (474)
67 PF07172 GRP: Glycine rich pro 21.2 1.4E+02 0.0031 23.7 3.7 11 73-83 11-21 (95)
68 PRK13682 hypothetical protein; 20.8 3.1E+02 0.0068 19.3 6.0 42 289-330 3-44 (51)
69 KOG1277 Endosomal membrane pro 20.7 9.7E+02 0.021 24.9 10.6 32 279-310 350-381 (593)
No 1
>COG0730 Predicted permeases [General function prediction only]
Probab=99.87 E-value=1.7e-20 Score=176.81 Aligned_cols=202 Identities=22% Similarity=0.298 Sum_probs=171.7
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 017801 4 RRIRLPPCLACMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTS 83 (365)
Q Consensus 4 ~~~~a~~lS~~~I~g~sl~~~~~~~~k~hP~~~~plId~~l~lil~P~~l~Ga~iGv~l~~~lP~~ll~~lf~v~L~~~~ 83 (365)
.+++|.+.|...+..+++.+...+.||+| +||+.+..+.+..++|+.+|+.+...+|+..+...+.+++++.+
T Consensus 42 ~~~~a~~t~l~~~~~~~~~~~~~~~k~~~-------v~~~~~~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~ 114 (258)
T COG0730 42 PPAAALGTSLLAVLFTSLSSALAYLKRGN-------VDWKLALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLA 114 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------ccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999988 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcccccCCCCCCCCCCCCCCCchhhhhhcccchHHHHHHHHHHHHHHH
Q 017801 84 TKAFLKGVETWKRETILKKEAARCLGSNGAGAGEVEYKSLPSGPRSGPQKDAMEPEVTILENINWKELGLLVFVWVAFLG 163 (365)
Q Consensus 84 ~~~~~k~~~~~k~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 163 (365)
.+++.+.++ .++|.+ . + +..|+.
T Consensus 115 ~~~~~~~~~-~~~~~~-------------------------~-----------~------~~~~~~-------------- 137 (258)
T COG0730 115 LYMLLGPRL-AKAEDR-------------------------A-----------A------RLRPLL-------------- 137 (258)
T ss_pred HHHHHhccc-cccccc-------------------------c-----------c------ccCcch--------------
Confidence 999876432 000000 0 0 000111
Q ss_pred HHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCccchhhHHHHHHHHHHHHHHHHhhhcccc
Q 017801 164 LQIAKNHTASCSIVYWVLDLLQIPVSLVVSLYEAISLYKGRRVIASKGDDGKSFRVFQLVSYCAFGVLAGIVGGLLGLGG 243 (365)
Q Consensus 164 ~~~~~~~~~~c~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGG 243 (365)
.......|+++|+++|++|+||
T Consensus 138 ----------------------------------------------------------~~~~~~~g~~~G~~sG~~G~Gg 159 (258)
T COG0730 138 ----------------------------------------------------------FALALLIGFLAGFLSGLFGVGG 159 (258)
T ss_pred ----------------------------------------------------------hHHHHHHHHHHHHHHhcccCCc
Confidence 0123457899999999999999
Q ss_pred hhhHHHHHh-hcCCChHHHHHhHHHHHHHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHH
Q 017801 244 GFIMGPLFL-ELGVPPQVSSATATFAMTFSSSMSVVEYYL-LKRFPVPYALYFVAVATIAAFVGQHVVRKLIILLGRASL 321 (365)
Q Consensus 244 G~i~vP~L~-~~g~~~~~A~ats~~~~~~~s~~~~~~~~~-~g~v~~~~~~~l~~~~~~ga~lGa~l~~~l~~~~lr~~~ 321 (365)
|...+|.+. ..+.|.+.+++||.+.+++++..+...|.. .|++||..+..+.+++++|+++|++++++++++.+|+.+
T Consensus 160 G~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~g~~~G~~lG~~l~~~~~~~~lr~~~ 239 (258)
T COG0730 160 GFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGAVDWPLALLLAVGSILGAYLGARLARRLSPKVLRRLF 239 (258)
T ss_pred hHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999995 678999999999999999999999999999 799999998899999999999999999999999999988
Q ss_pred HHHHHH
Q 017801 322 IIFILA 327 (365)
Q Consensus 322 ~~~ll~ 327 (365)
..+++.
T Consensus 240 ~~~~~~ 245 (258)
T COG0730 240 ALVLLA 245 (258)
T ss_pred HHHHHH
Confidence 765443
No 2
>PRK10621 hypothetical protein; Provisional
Probab=99.87 E-value=8.4e-21 Score=179.78 Aligned_cols=198 Identities=16% Similarity=0.107 Sum_probs=167.2
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 017801 4 RRIRLPPCLACMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTS 83 (365)
Q Consensus 4 ~~~~a~~lS~~~I~g~sl~~~~~~~~k~hP~~~~plId~~l~lil~P~~l~Ga~iGv~l~~~lP~~ll~~lf~v~L~~~~ 83 (365)
++++|+++|.+.++.+++.+...+.|++| +||+.+..+.+..++|+.+|+++...+|+..+..++.+++++.+
T Consensus 46 ~~~~Av~tsl~~~~~~~~~~~~~~~~~~~-------v~~~~~~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~ 118 (266)
T PRK10621 46 SPAQALATNKLQACGGSFSASLYFIRRKV-------VNLADQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIG 118 (266)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999988877 99999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcccccCCCCCCCCCCCCCCCchhhhhhcccchHHHHHHHHHHHHHHH
Q 017801 84 TKAFLKGVETWKRETILKKEAARCLGSNGAGAGEVEYKSLPSGPRSGPQKDAMEPEVTILENINWKELGLLVFVWVAFLG 163 (365)
Q Consensus 84 ~~~~~k~~~~~k~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 163 (365)
.+++.+.+ ++++ +++ + ++..
T Consensus 119 ~~~l~~~~----~~~~-------------------------~~~---------~---------~~~~------------- 138 (266)
T PRK10621 119 LYFLLMPK----LGEE-------------------------DRQ---------R---------RLYG------------- 138 (266)
T ss_pred HHHHHCCc----cccc-------------------------ccc---------c---------cccc-------------
Confidence 77764310 0000 000 0 0000
Q ss_pred HHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCccchhhHHHHHHHHHHHHHHHHhhhcccc
Q 017801 164 LQIAKNHTASCSIVYWVLDLLQIPVSLVVSLYEAISLYKGRRVIASKGDDGKSFRVFQLVSYCAFGVLAGIVGGLLGLGG 243 (365)
Q Consensus 164 ~~~~~~~~~~c~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGG 243 (365)
.......|+++|+++|++|+||
T Consensus 139 ----------------------------------------------------------~~~~~~~G~~~G~lsG~~G~Gg 160 (266)
T PRK10621 139 ----------------------------------------------------------LPFALIAGGCVGFYDGFFGPGA 160 (266)
T ss_pred ----------------------------------------------------------hHHHHHHHHHHHHHhcccchhH
Confidence 0012346889999999999999
Q ss_pred hhhHHHHH-hhcCCChHHHHHhHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHH
Q 017801 244 GFIMGPLF-LELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKLIILLGRASLI 322 (365)
Q Consensus 244 G~i~vP~L-~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~~l~~~~lr~~~~ 322 (365)
|.+.+|.+ ..++.|+++|++|+.+..+.+++.+...|...|++||..++.+.+++++|+++|+++.++++++.+|+.+.
T Consensus 161 G~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~~~~~G~v~~~~~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~ 240 (266)
T PRK10621 161 GSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLLFILGGKVIWATGFVMLVGQFLGARLGARLVLSKGQKLIRPMIV 240 (266)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHHHHHHHHHHHHHHHcCchHhHHHHH
Confidence 99999877 56799999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHH
Q 017801 323 IFIL 326 (365)
Q Consensus 323 ~~ll 326 (365)
.+++
T Consensus 241 ~ll~ 244 (266)
T PRK10621 241 IVSA 244 (266)
T ss_pred HHHH
Confidence 7654
No 3
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.83 E-value=1.8e-19 Score=167.31 Aligned_cols=199 Identities=22% Similarity=0.348 Sum_probs=165.9
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 017801 4 RRIRLPPCLACMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTS 83 (365)
Q Consensus 4 ~~~~a~~lS~~~I~g~sl~~~~~~~~k~hP~~~~plId~~l~lil~P~~l~Ga~iGv~l~~~lP~~ll~~lf~v~L~~~~ 83 (365)
++++|+|+|......+++.+...+.|++| +||+....+.+..++|+.+|+++...+|+..+..++.+++.+.+
T Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------i~~~~~~~~~~~~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~ 104 (240)
T PF01925_consen 32 PPKQAVATSLFINLFTSLIAALRHRKHGN-------IDWKIVLPLIIGALIGVVIGAWLLSLLPDDILKLIFGLFLLLLA 104 (240)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHccc-------cchhhhhhhhhHhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Confidence 57889999999999999999888766544 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcccccCCCCCCCCCCCCCCCchhhhhhcccchHHHHHHHHHHHHHHH
Q 017801 84 TKAFLKGVETWKRETILKKEAARCLGSNGAGAGEVEYKSLPSGPRSGPQKDAMEPEVTILENINWKELGLLVFVWVAFLG 163 (365)
Q Consensus 84 ~~~~~k~~~~~k~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 163 (365)
.+++.|.++ ++.+. + . + +.+
T Consensus 105 ~~~~~~~~~---~~~~~--~---------------------~-----------~---------~~~-------------- 124 (240)
T PF01925_consen 105 IYMLLKKRR---KTPKS--R---------------------S-----------S---------PPK-------------- 124 (240)
T ss_pred HHHHhcccc---ccccc--c---------------------c-----------c---------ccc--------------
Confidence 988764211 00000 0 0 0 000
Q ss_pred HHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCccchhhHHHHHHHHHHH-HHHHHhhhccc
Q 017801 164 LQIAKNHTASCSIVYWVLDLLQIPVSLVVSLYEAISLYKGRRVIASKGDDGKSFRVFQLVSYCAFGVL-AGIVGGLLGLG 242 (365)
Q Consensus 164 ~~~~~~~~~~c~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~G~~sgl~GiG 242 (365)
.......|.+ +|+++|++|+|
T Consensus 125 ----------------------------------------------------------~~~~~~~g~~~~G~~~G~~g~g 146 (240)
T PF01925_consen 125 ----------------------------------------------------------RWLLFLLGGLFIGFLSGLFGIG 146 (240)
T ss_pred ----------------------------------------------------------hhhhhhhhHHHhhHHHhhhhcc
Confidence 0012234445 99999999999
Q ss_pred chhhHHHHHh-hcCCChHHHHHhHHHHHHHHHHHHHHHHHHcCCCChHHHHH---HHHHHHHHHHHHHHHHHHhHHHHhH
Q 017801 243 GGFIMGPLFL-ELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALY---FVAVATIAAFVGQHVVRKLIILLGR 318 (365)
Q Consensus 243 GG~i~vP~L~-~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g~v~~~~~~~---l~~~~~~ga~lGa~l~~~l~~~~lr 318 (365)
||.+.+|++. ..+.|++++.+|+.++.++++..+...|...|.+||+.... +.+++++|+++|.++.++++++..|
T Consensus 147 gg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~ 226 (240)
T PF01925_consen 147 GGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLILGDVDWPMLLLSLILLPGAFLGAFLGAKLARKIPQKVFR 226 (240)
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999996 47999999999999999999999999999999999998777 9999999999999999999999999
Q ss_pred HHHHHHHHH
Q 017801 319 ASLIIFILA 327 (365)
Q Consensus 319 ~~~~~~ll~ 327 (365)
+.+..+++.
T Consensus 227 ~~~~~ll~~ 235 (240)
T PF01925_consen 227 RIFLILLLL 235 (240)
T ss_pred HHHHHHHHH
Confidence 988776553
No 4
>PRK10621 hypothetical protein; Provisional
Probab=99.53 E-value=1.9e-13 Score=129.46 Aligned_cols=106 Identities=21% Similarity=0.282 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhhHHHHHhhcCCChHHHHHhHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 017801 221 QLVSYCAFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATI 300 (365)
Q Consensus 221 ~~~~~~~~g~~~G~~sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~~~~ 300 (365)
........|+++|+++|+.| |||.+.+|+|..+|+||++|++|+.+.++.+++++...|.+++++||+....+.+++++
T Consensus 11 ~~~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~l~ 89 (266)
T PRK10621 11 LLGVLFFVAMLAGFIDSIAG-GGGLLTIPALLAAGMSPAQALATNKLQACGGSFSASLYFIRRKVVNLADQKLNIAMTFV 89 (266)
T ss_pred HHHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34556678999999999999 99999999998789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHH
Q 017801 301 AAFVGQHVVRKLIILLGRASLIIFILA 327 (365)
Q Consensus 301 ga~lGa~l~~~l~~~~lr~~~~~~ll~ 327 (365)
|+++|++++.++|++.+|..+.++++.
T Consensus 90 Ga~~G~~l~~~l~~~~l~~~~~~~ll~ 116 (266)
T PRK10621 90 GSMSGALLVQYVQADILRQILPILVIG 116 (266)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999999887765443
No 5
>COG0730 Predicted permeases [General function prediction only]
Probab=99.49 E-value=6.1e-13 Score=125.33 Aligned_cols=107 Identities=31% Similarity=0.445 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhhHHHHHhhcCCChHHHHHhHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 017801 221 QLVSYCAFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATI 300 (365)
Q Consensus 221 ~~~~~~~~g~~~G~~sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~~~~ 300 (365)
........|+++|+++|++|+|||.+.+|.|...++||++|.+|++....+++..+...|+++|++||+.+..+..++++
T Consensus 6 ~~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~~~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~v~~~~~~~l~~~~~~ 85 (258)
T COG0730 6 TLLLLFLVGLLAGFISGLAGGGGGLLTVPALLLLGLPPAAALGTSLLAVLFTSLSSALAYLKRGNVDWKLALILLLGALI 85 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 45667789999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHH
Q 017801 301 AAFVGQHVVRKLIILLGRASLIIFILA 327 (365)
Q Consensus 301 ga~lGa~l~~~l~~~~lr~~~~~~ll~ 327 (365)
|+.+|+.+..++|++.++..+.++++.
T Consensus 86 G~~lG~~l~~~~~~~~l~~~~~~~ll~ 112 (258)
T COG0730 86 GAFLGALLALLLPAELLKLLFGLLLLL 112 (258)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999999877666543
No 6
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.28 E-value=3.8e-11 Score=111.40 Aligned_cols=101 Identities=26% Similarity=0.413 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhhhcccchhhHHHHHhhcCCChHHHHHhHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHH
Q 017801 226 CAFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIAAFVG 305 (365)
Q Consensus 226 ~~~g~~~G~~sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~~~~ga~lG 305 (365)
.+.++++|+++|.+|.|||.+.+|+|..+ +|+++|++|+.....+++..++..|++++++||+...++.+++++|+.+|
T Consensus 2 ~~~~~~ag~v~g~~G~g~g~i~~p~l~~~-l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~iG 80 (240)
T PF01925_consen 2 LLIGFLAGFVSGITGFGGGLIAVPILILF-LPPKQAVATSLFINLFTSLIAALRHRKHGNIDWKIVLPLIIGALIGVVIG 80 (240)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhhhhhHhHHHHHHH
Confidence 35789999999999999999999999665 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHhHHHHHHHHHH
Q 017801 306 QHVVRKLIILLGRASLIIFILA 327 (365)
Q Consensus 306 a~l~~~l~~~~lr~~~~~~ll~ 327 (365)
+++...+|++.++..+.++++.
T Consensus 81 ~~l~~~l~~~~l~~~~~~~ll~ 102 (240)
T PF01925_consen 81 AWLLSLLPDDILKLIFGLFLLL 102 (240)
T ss_pred HhhhcchhHHHHHHHHHHHHHH
Confidence 9999999999888777766544
No 7
>PRK11469 hypothetical protein; Provisional
Probab=83.26 E-value=34 Score=30.72 Aligned_cols=50 Identities=12% Similarity=0.275 Sum_probs=36.3
Q ss_pred chhHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHH
Q 017801 41 DYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKGV 91 (365)
Q Consensus 41 d~~l~lil~P~~l~Ga~iGv~l~~~lP~~ll~~lf~v~L~~~~~~~~~k~~ 91 (365)
+.-.+..-.-+.++|...|..+..++|++--.+-+. +|.+.+.+|++++.
T Consensus 40 ~l~~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~-lL~~lG~~mi~e~~ 89 (188)
T PRK11469 40 GLIFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFV-LLIFLGGRMIIEGF 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 333455556777888899999999999876444444 56888889988654
No 8
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=78.47 E-value=61 Score=30.65 Aligned_cols=90 Identities=10% Similarity=-0.057 Sum_probs=57.0
Q ss_pred hhhcccchhhHHHHHhhcCCChHHHHHhHHHHHHHHHHHHHHHHHHc-C-----CCChHHHHHHHHHHHHHHHHHHHHHH
Q 017801 237 GLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLL-K-----RFPVPYALYFVAVATIAAFVGQHVVR 310 (365)
Q Consensus 237 gl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~-g-----~v~~~~~~~l~~~~~~ga~lGa~l~~ 310 (365)
-+=|+.=.-..+-..+..|++.++|.=-|-.+..+..+.+...-..+ . ..++.....-.+.+++.+++.-+...
T Consensus 158 l~PGiSRSG~Ti~~~l~~G~~r~~A~~fSFllsiP~ilga~~l~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~ll 237 (259)
T PF02673_consen 158 LIPGISRSGATITAGLLLGLDREEAARFSFLLSIPAILGAGLLELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWLL 237 (259)
T ss_pred cCCCcChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554455555567899999999999998888877766543332 1 13444444555566666677766666
Q ss_pred HhHHHHhHHHHHHHHH
Q 017801 311 KLIILLGRASLIIFIL 326 (365)
Q Consensus 311 ~l~~~~lr~~~~~~ll 326 (365)
++-++..-+.|..+.+
T Consensus 238 ~~~~~~~~~~F~~Y~~ 253 (259)
T PF02673_consen 238 RFLKRRKLRPFAIYRI 253 (259)
T ss_pred HHHhhCCceeehhHHh
Confidence 6666655555655543
No 9
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=72.05 E-value=21 Score=33.80 Aligned_cols=62 Identities=18% Similarity=0.091 Sum_probs=49.2
Q ss_pred CCccchhHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 017801 37 MPIIDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKGVETWKRET 98 (365)
Q Consensus 37 ~plId~~l~lil~P~~l~Ga~iGv~l~~~lP~~ll~~lf~v~L~~~~~~~~~k~~~~~k~e~ 98 (365)
|-.+=-....-+.-|+++++.+|=..-.++|..+-..+=.+++.+-++||++-++++...|.
T Consensus 98 R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~~~~ 159 (294)
T KOG2881|consen 98 RLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMSPSEG 159 (294)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 45566666667788899999999888889999888888888888889999998876655443
No 10
>PTZ00370 STEVOR; Provisional
Probab=70.52 E-value=8.1 Score=36.90 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 017801 53 MLGISIGVAFNVIFA---DWMVTVLLIVLFIGTSTKAFLKGVETWKRETI 99 (365)
Q Consensus 53 l~Ga~iGv~l~~~lP---~~ll~~lf~v~L~~~~~~~~~k~~~~~k~e~~ 99 (365)
++|+..|...+.+.| ..+++++++++|+..=...+||+++.||.|.+
T Consensus 242 lagtAAtaAsaaF~Pygiaalvllil~vvliilYiwlyrrRK~swkhe~k 291 (296)
T PTZ00370 242 LAGTAASAASSAFYPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHECK 291 (296)
T ss_pred ccchHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 456667777777776 34456666666666666678888899998874
No 11
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=64.16 E-value=1.1e+02 Score=27.69 Aligned_cols=53 Identities=8% Similarity=0.165 Sum_probs=38.5
Q ss_pred cchhHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 017801 40 IDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKGVE 92 (365)
Q Consensus 40 Id~~l~lil~P~~l~Ga~iGv~l~~~lP~~ll~~lf~v~L~~~~~~~~~k~~~ 92 (365)
...-+..+-.-+..+|..+|..+..++|+++-..+=.++|++.+.+|++++.+
T Consensus 32 ~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~~ 84 (206)
T TIGR02840 32 SNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAFR 84 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555566788888899999999988655555566778889999987643
No 12
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=61.94 E-value=1.5e+02 Score=28.15 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhHHHHHhhcCCChHHHHHhHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 017801 222 LVSYCAFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIA 301 (365)
Q Consensus 222 ~~~~~~~g~~~G~~sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~~~~g 301 (365)
.+.+...|++++.--=+=|+.|..+++ .+|.=.....+-+.+.. -|+....++++|+++|
T Consensus 142 ~~~lf~~G~ia~~AMIlPGiSGS~iLl----ilG~Y~~vl~ai~~~~~----------------~~~~~L~~f~~G~~~G 201 (257)
T PF04018_consen 142 YLYLFLAGAIAACAMILPGISGSFILL----ILGLYEPVLSAISDLID----------------SNIPVLIPFGIGVVIG 201 (257)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHH----HHHhHHHHHHHHHHhhh----------------hhhHHHHHHHHHHHHH
Confidence 345556666665555556777665532 33432222222222211 5778889999999999
Q ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 017801 302 AFVGQHVVRKLIILLGRASLIIFILAFM 329 (365)
Q Consensus 302 a~lGa~l~~~l~~~~lr~~~~~~ll~~~ 329 (365)
-..-+|+.+++-+++-+..+.. +++.+
T Consensus 202 i~~~skll~~ll~~~~~~t~~~-i~Glv 228 (257)
T PF04018_consen 202 ILLFSKLLSYLLKRYRSQTYAF-IIGLV 228 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 9999999999998887766543 44443
No 13
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=61.71 E-value=7.7 Score=37.00 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 017801 53 MLGISIGVAFNVIFA---DWMVTVLLIVLFIGTSTKAFLKGVETWKRET 98 (365)
Q Consensus 53 l~Ga~iGv~l~~~lP---~~ll~~lf~v~L~~~~~~~~~k~~~~~k~e~ 98 (365)
++|+..|...+.+.| ..+++++++++|+..=...+||+++.||.|.
T Consensus 246 lagtAAtaA~aaF~Pcgiaalvllil~vvliiLYiWlyrrRK~swkhe~ 294 (295)
T TIGR01478 246 DAERAASAATSTFLPYGIAALVLIILTVVLIILYIWLYRRRKKSWKHEC 294 (295)
T ss_pred ccchHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 456667777777777 3445566666666555566777777777653
No 14
>COG3619 Predicted membrane protein [Function unknown]
Probab=60.47 E-value=29 Score=32.24 Aligned_cols=70 Identities=13% Similarity=0.110 Sum_probs=47.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHhhhcC-CCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 017801 6 IRLPPCLACMIMGAAVSTVYYNLKLRH-PTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLI 76 (365)
Q Consensus 6 ~~a~~lS~~~I~g~sl~~~~~~~~k~h-P~~~~plId~~l~lil~P~~l~Ga~iGv~l~~~lP~~ll~~lf~ 76 (365)
.+..|++.+++.| .+.++-.++-+.- +.++..+.||-.-..+.+....|++.|+++...+-++.+...-.
T Consensus 135 ~~g~~~~~t~~TG-nl~~~~~~l~~~l~~k~~~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~~~~ 205 (226)
T COG3619 135 VGGAPYGTTYVTG-NLKSAGRGLGRYLSGKDKEKLRDWLIYLSLILSFIVGAICGALLTLFFGLKALWVVAA 205 (226)
T ss_pred hcCccccchhhhh-hHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3445555554444 4555555552211 11257889999999999999999999999999998876654433
No 15
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=57.20 E-value=1.7e+02 Score=27.28 Aligned_cols=26 Identities=27% Similarity=0.110 Sum_probs=18.2
Q ss_pred chhHHHHHhhHHHHHHHHHHHHHHHh
Q 017801 41 DYDLALLIQPMLMLGISIGVAFNVIF 66 (365)
Q Consensus 41 d~~l~lil~P~~l~Ga~iGv~l~~~l 66 (365)
=++....+.-+.++|.++|......-
T Consensus 8 ~~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 8 ILRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777788888887665544
No 16
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=52.47 E-value=51 Score=25.16 Aligned_cols=36 Identities=8% Similarity=0.030 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHH
Q 017801 289 PYALYFVAVATIAAFVGQHVVRKLIILLGRASLIIF 324 (365)
Q Consensus 289 ~~~~~l~~~~~~ga~lGa~l~~~l~~~~lr~~~~~~ 324 (365)
...+.+.+...++..+|..+.+++|+++.+..-.+.
T Consensus 38 G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~l 73 (78)
T PF01169_consen 38 GATLALALATGLAVLLGSWLASRIPERYIKWVAGAL 73 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 344556677788999999999999999988765543
No 17
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=51.65 E-value=90 Score=25.22 Aligned_cols=17 Identities=35% Similarity=1.021 Sum_probs=11.6
Q ss_pred cccchHHHHHHHHHHHHHHH
Q 017801 144 ENINWKELGLLVFVWVAFLG 163 (365)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~~ 163 (365)
+.+||. +|.+.|++|.+
T Consensus 83 ~~LPW~---LL~lSW~gF~~ 99 (103)
T PF11169_consen 83 SWLPWG---LLVLSWIGFIA 99 (103)
T ss_pred cchhHH---HHHHHHHHHHH
Confidence 346775 67788887754
No 18
>PRK10420 L-lactate permease; Provisional
Probab=49.29 E-value=2e+02 Score=30.37 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhhcccchhh-HHHHHhhcCCChHHHHHhHHHHHH
Q 017801 227 AFGVLAGIVGGLLGLGGGFI-MGPLFLELGVPPQVSSATATFAMT 270 (365)
Q Consensus 227 ~~g~~~G~~sgl~GiGGG~i-~vP~L~~~g~~~~~A~ats~~~~~ 270 (365)
+.-.+.+|+=|..|.|-... ..|+|..+|++|-.|+..++....
T Consensus 121 I~~~Fg~FlEg~AGFGtpvAI~aplLv~LGF~Pl~Aa~i~Li~ns 165 (551)
T PRK10420 121 VGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLCLIVNT 165 (551)
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHcCCChHHHHHHHHHHcC
Confidence 34456679999999888764 466668899999999998887665
No 19
>PF04066 MrpF_PhaF: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro: IPR007208 Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation. It is also involved in symbiosis in Rhizobium meliloti (Sinorhizobium meliloti) []. MrpF is a part of a Na+/H+ antiporter complex, also involved in pH homeostasis. MrpF is thought to be an efflux system for Na+ and cholate []. The Mrp system in Gram-positive species may also have primary energisation capacities [].; GO: 0015075 ion transmembrane transporter activity, 0034220 ion transmembrane transport, 0016021 integral to membrane
Probab=47.90 E-value=96 Score=21.83 Aligned_cols=52 Identities=8% Similarity=0.088 Sum_probs=40.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 017801 259 QVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVR 310 (365)
Q Consensus 259 ~~A~ats~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~ 310 (365)
-..+|...+.....................+.++.+.+.+++|+..-+|..+
T Consensus 3 DRvva~d~~~~~~v~~l~l~a~~~~~~~~lDialv~all~Fvgtva~arfl~ 54 (55)
T PF04066_consen 3 DRVVALDLISTLIVALLALLAIITGRPFYLDIALVYALLGFVGTVAFARFLE 54 (55)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3566777777777777778787777777788888999998888887776644
No 20
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=46.03 E-value=94 Score=31.21 Aligned_cols=12 Identities=33% Similarity=0.952 Sum_probs=9.1
Q ss_pred HhhhcCCCCCCC
Q 017801 27 NLKLRHPTLDMP 38 (365)
Q Consensus 27 ~~~k~hP~~~~p 38 (365)
.+|||||+.+||
T Consensus 369 ~lr~~~p~~~rp 380 (442)
T TIGR00908 369 TLRIRRPDMERP 380 (442)
T ss_pred HHHhcCCCCCCC
Confidence 358889987776
No 21
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=45.16 E-value=2.8e+02 Score=26.38 Aligned_cols=87 Identities=14% Similarity=-0.004 Sum_probs=47.3
Q ss_pred hcccchhhHHHHHhhcCCChHHHHHhHHHHHHHHHHHHHHHHH-Hc-CC---CChHHHHHHHHHHHHHHHHHHHHHHHhH
Q 017801 239 LGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYY-LL-KR---FPVPYALYFVAVATIAAFVGQHVVRKLI 313 (365)
Q Consensus 239 ~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~-~~-g~---v~~~~~~~l~~~~~~ga~lGa~l~~~l~ 313 (365)
=|+.-.-..+-..++.|++.++|.=-|-++..+.-+.+...-. .. +. .++...+.-.+.+++.+++.-+...++-
T Consensus 164 PGiSRSG~TI~~~l~~G~~r~~Aa~fSFLlsiPai~gA~~l~~~~~~~~~~~~~~~~~~~g~i~afi~g~~~I~~ll~~~ 243 (268)
T PRK00281 164 PGTSRSGATISGGLLLGLSREAAAEFSFLLAIPAMLGASLLDLLKLFHLLSAADLPLLAVGFVVAFVVALIAIKWLLKYI 243 (268)
T ss_pred CCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333344444578999999999999988887666655322 11 11 3333222233344455555555555554
Q ss_pred HHHhHHHHHHHH
Q 017801 314 ILLGRASLIIFI 325 (365)
Q Consensus 314 ~~~lr~~~~~~l 325 (365)
++.--..|+.+.
T Consensus 244 ~~~~~~~F~~Yr 255 (268)
T PRK00281 244 KRHSFTPFAIYR 255 (268)
T ss_pred HhCCceehHHHH
Confidence 444334555544
No 22
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=43.21 E-value=3.3e+02 Score=26.68 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=33.7
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHhhHHHHHHHH
Q 017801 42 YDLALLIQPMLMLGISIGVAFNV--IFADWMVTVLLIVLFIGTSTKAFLKGV 91 (365)
Q Consensus 42 ~~l~lil~P~~l~Ga~iGv~l~~--~lP~~ll~~lf~v~L~~~~~~~~~k~~ 91 (365)
|..+++..|..+++..+=.+... .+-+.++..++.++..+..+.+.++..
T Consensus 200 ~~~~li~~Pl~li~la~~GY~yTA~~L~~~l~~sl~l~~~~~l~~~l~~Rwl 251 (340)
T PF12794_consen 200 WWPLLILAPLALIVLALLGYYYTALQLLERLILSLYLLLGWLLVYQLILRWL 251 (340)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888776555543 455666666666677777777776644
No 23
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=42.65 E-value=1.2e+02 Score=28.11 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=31.0
Q ss_pred HHHhhhcCCCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHH
Q 017801 25 YYNLKLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFL 88 (365)
Q Consensus 25 ~~~~~k~hP~~~~plId~~l~lil~P~~l~Ga~iGv~l~~~lP~~ll~~lf~v~L~~~~~~~~~ 88 (365)
.|++.+++ -|.+-|=+...+.-...++.++|.+++ .|...+++++++.+.+.....
T Consensus 16 ~y~~trk~----dp~l~~~ml~a~l~~~~v~v~ig~l~~----~~~~~~i~gi~~g~l~am~vl 71 (224)
T PF13829_consen 16 AYKMTRKE----DPKLPWLMLGAFLGPIAVFVLIGLLFG----SWWYWLIIGILLGLLAAMIVL 71 (224)
T ss_pred HHHHHHHH----CcchHHHHHHHHHHHHHHHHHHHHHHc----cHHHHHHHHHHHHHHHHHHHH
Confidence 45555555 244444444444444455555555555 666667777766666554443
No 24
>PRK09695 glycolate transporter; Provisional
Probab=41.81 E-value=3e+02 Score=29.20 Aligned_cols=44 Identities=23% Similarity=0.341 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhhcccchhh-HHHHHhhcCCChHHHHHhHHHHHH
Q 017801 227 AFGVLAGIVGGLLGLGGGFI-MGPLFLELGVPPQVSSATATFAMT 270 (365)
Q Consensus 227 ~~g~~~G~~sgl~GiGGG~i-~vP~L~~~g~~~~~A~ats~~~~~ 270 (365)
+.-.+.+|+=|..|.|-... ..|+|..+|++|-.|+..++....
T Consensus 121 I~~~Fg~FlEg~aGFGtPvAI~aplLv~LGF~Pl~Aa~i~Li~ns 165 (560)
T PRK09695 121 IGFSFGALLEGAAGFGAPVAITGALLVGLGFKPLYAAGLCLIANT 165 (560)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHcCCChHHHHHHHHHHcC
Confidence 33456789999999998764 466668899999999988887654
No 25
>COG4280 Predicted membrane protein [Function unknown]
Probab=37.78 E-value=45 Score=30.38 Aligned_cols=32 Identities=9% Similarity=0.042 Sum_probs=27.8
Q ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017801 64 VIFADWMVTVLLIVLFIGTSTKAFLKGVETWK 95 (365)
Q Consensus 64 ~~lP~~ll~~lf~v~L~~~~~~~~~k~~~~~k 95 (365)
.++|-..+.+.-.++|++-++|..||+.+.++
T Consensus 59 ~lvPln~lqiv~gvLLllFG~rw~Rsavrr~a 90 (236)
T COG4280 59 YLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFA 90 (236)
T ss_pred eeeechHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688889999999999999999999887665
No 26
>PRK10263 DNA translocase FtsK; Provisional
Probab=37.18 E-value=6.6e+02 Score=29.60 Aligned_cols=17 Identities=18% Similarity=-0.015 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhhccc
Q 017801 226 CAFGVLAGIVGGLLGLG 242 (365)
Q Consensus 226 ~~~g~~~G~~sgl~GiG 242 (365)
.+...++.++-++||++
T Consensus 66 iVGA~LAD~L~~LFGl~ 82 (1355)
T PRK10263 66 MPGAWLADTLFFIFGVM 82 (1355)
T ss_pred hHHHHHHHHHHHHHhHH
Confidence 34456677777788853
No 27
>PF09775 Keratin_assoc: Keratinocyte-associated protein 2; InterPro: IPR018614 Members of this family comprise various keratinocyte-associated proteins. The function of these proteins is not known.
Probab=35.79 E-value=1.7e+02 Score=24.83 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=28.3
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHhhHHHHHHHHHHHH
Q 017801 8 LPPCLACMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAF 62 (365)
Q Consensus 8 a~~lS~~~I~g~sl~~~~~~~~k~hP~~~~plId~~l~lil~P~~l~Ga~iGv~l 62 (365)
|+..+..++...-+.-.++-..| +.=+...--++.+++|..+|+++
T Consensus 2 avst~~S~~lS~ll~vlifa~mq---------~~k~~l~sS~~~ti~GGflgS~l 47 (131)
T PF09775_consen 2 AVSTGTSLLLSSLLSVLIFAGMQ---------MYKPWLASSQLLTILGGFLGSLL 47 (131)
T ss_pred CccccHHHHHHHHHHHHHHHHHH---------HhHHHhccchHHHHHHHHHHHHH
Confidence 34445556666666666666655 23333444566788888888876
No 28
>COG1971 Predicted membrane protein [Function unknown]
Probab=35.43 E-value=1.1e+02 Score=27.54 Aligned_cols=47 Identities=21% Similarity=0.400 Sum_probs=31.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 017801 45 ALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKGVE 92 (365)
Q Consensus 45 ~lil~P~~l~Ga~iGv~l~~~lP~~ll~~lf~v~L~~~~~~~~~k~~~ 92 (365)
.....-+.++|+..|-++++++.+|--.+-++ +|.+.+.+|++.+.+
T Consensus 44 G~f~~i~pliG~~~g~~~s~~i~~~~~wigf~-lL~~lG~~mI~e~f~ 90 (190)
T COG1971 44 GVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFV-LLIILGLKMIIEGFK 90 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Confidence 44455677888888888886666665545555 456677788876543
No 29
>COG2119 Predicted membrane protein [Function unknown]
Probab=35.17 E-value=3.4e+02 Score=24.48 Aligned_cols=78 Identities=14% Similarity=0.076 Sum_probs=56.3
Q ss_pred cchhhHHHHHHHHHHHHHHHh----hhcCCCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 017801 8 LPPCLACMIMGAAVSTVYYNL----KLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTS 83 (365)
Q Consensus 8 a~~lS~~~I~g~sl~~~~~~~----~k~hP~~~~plId~~l~lil~P~~l~Ga~iGv~l~~~lP~~ll~~lf~v~L~~~~ 83 (365)
+.-+|..+|+++=+..--+.+ --||+ |-.|=-..+.-+.-+..+.+.+|-.....+|+..+....++..+..+
T Consensus 3 ~~~~s~~~v~laEiGDKT~lia~llA~r~~---~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafa 79 (190)
T COG2119 3 ALLVSLLMVALAEIGDKTQLIAMLLAMRYR---RWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFA 79 (190)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 455677778776655433333 22342 33455677778888999999999999999999888888888878788
Q ss_pred HHHHH
Q 017801 84 TKAFL 88 (365)
Q Consensus 84 ~~~~~ 88 (365)
.+++.
T Consensus 80 v~~l~ 84 (190)
T COG2119 80 VWMLI 84 (190)
T ss_pred HHHhc
Confidence 77664
No 30
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.86 E-value=1.8e+02 Score=23.89 Aligned_cols=37 Identities=19% Similarity=0.446 Sum_probs=26.4
Q ss_pred chhHHHHHhhHHHHHHHHHHHHHHHh--HHHHHHHHHHH
Q 017801 41 DYDLALLIQPMLMLGISIGVAFNVIF--ADWMVTVLLIV 77 (365)
Q Consensus 41 d~~l~lil~P~~l~Ga~iGv~l~~~l--P~~ll~~lf~v 77 (365)
-|.+..=+.-.+++|+.+|-++-+++ .+|.+.+++.+
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lll 83 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLL 83 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 36777777888888888888888877 45655444433
No 31
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=34.64 E-value=2.3e+02 Score=25.54 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=22.6
Q ss_pred chhHHHHHhhHHHHHHHHHHHHHHHhHH
Q 017801 41 DYDLALLIQPMLMLGISIGVAFNVIFAD 68 (365)
Q Consensus 41 d~~l~lil~P~~l~Ga~iGv~l~~~lP~ 68 (365)
-++..++-.-...+|.++|..+..++|.
T Consensus 139 ~~rA~~~~~~~L~~G~~lGs~l~~~l~~ 166 (194)
T PF11833_consen 139 LGRAFLWTLGGLVVGLILGSLLASWLPV 166 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4677777778889999999999887754
No 32
>PRK11281 hypothetical protein; Provisional
Probab=33.99 E-value=8e+02 Score=28.43 Aligned_cols=49 Identities=12% Similarity=0.280 Sum_probs=28.3
Q ss_pred hHHHHHhhHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHhhHHHHHHHH
Q 017801 43 DLALLIQPMLMLGISIGVAFNV--IFADWMVTVLLIVLFIGTSTKAFLKGV 91 (365)
Q Consensus 43 ~l~lil~P~~l~Ga~iGv~l~~--~lP~~ll~~lf~v~L~~~~~~~~~k~~ 91 (365)
..+++..|..+++..+=.+... .+-+.++..++.++..+..|.+..++.
T Consensus 689 ~~~l~~~P~~l~~l~~~GY~yTa~~l~~~l~~s~~l~~~~~l~~~~~~R~l 739 (1113)
T PRK11281 689 RTVLTIAPIALIVLVVLGYYYTALRLIGRLIETLYLLIIWNLLYQTVLRGL 739 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888886654444432 445555555666555555555555443
No 33
>PRK11387 S-methylmethionine transporter; Provisional
Probab=33.70 E-value=1.2e+02 Score=30.92 Aligned_cols=13 Identities=8% Similarity=-0.181 Sum_probs=6.9
Q ss_pred HHHHHhhHHHHHH
Q 017801 77 VLFIGTSTKAFLK 89 (365)
Q Consensus 77 v~L~~~~~~~~~k 89 (365)
++..+..|+..+|
T Consensus 445 ~~~~~~~~~~~~~ 457 (471)
T PRK11387 445 VALCYGAYYLTQR 457 (471)
T ss_pred HHHHHHHHHHhcc
Confidence 3445555665554
No 34
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=32.88 E-value=6e+02 Score=26.65 Aligned_cols=41 Identities=27% Similarity=0.465 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhcccchh-hHHHHHhhcCCChHHHHHhHHHHH
Q 017801 229 GVLAGIVGGLLGLGGGF-IMGPLFLELGVPPQVSSATATFAM 269 (365)
Q Consensus 229 g~~~G~~sgl~GiGGG~-i~vP~L~~~g~~~~~A~ats~~~~ 269 (365)
-.+.+|+=|..|.|-.. +..|+|..+|+||-+|+..++...
T Consensus 108 ~~Fg~flEgaaGFGtpvAI~aplLv~LGf~P~~Aa~l~Li~n 149 (522)
T PF02652_consen 108 FGFGAFLEGAAGFGTPVAIAAPLLVALGFPPLQAAALCLIGN 149 (522)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHcCCChHHHHHHHHHHc
Confidence 34567899999988885 667787899999999999988753
No 35
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=32.35 E-value=85 Score=32.71 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=51.7
Q ss_pred HHHHHHHH-HHHHHhhhcccch-hhHHHHHhhcCCChHHHHHhHHHHHHHHHHHHHHH-----HHHcCCCC-----hHHH
Q 017801 224 SYCAFGVL-AGIVGGLLGLGGG-FIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVE-----YYLLKRFP-----VPYA 291 (365)
Q Consensus 224 ~~~~~g~~-~G~~sgl~GiGGG-~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~-----~~~~g~v~-----~~~~ 291 (365)
...++|+. ..++=|..|.|.- .+..|+|..+|++|-.|.+-++.+....-..|++. -.....+| -..+
T Consensus 104 Q~llIg~~FgaflEGAaGFGtP~AI~ApLLVgLGF~PL~AA~l~LIaNtapvaFGAvGiPI~~~~~~tg~~~~~is~~v~ 183 (522)
T COG1620 104 QLLLIGFCFGAFLEGAAGFGTPAAIAAPLLVGLGFNPLKAAGLCLIANTAPVAFGAVGTPIIAAGLVTGIDLLEISAMVG 183 (522)
T ss_pred hhhhHHHHHHHHHhhhcccCChHHHHHHHHHHcCCChHHHHHHHHHhcCCCcccccccCceeeccccCCccHHHHHHHHH
Confidence 34445544 4578888998885 56678888999999999988777654332222221 01111122 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 017801 292 LYFVAVATIAAFVGQHVVRKL 312 (365)
Q Consensus 292 ~~l~~~~~~ga~lGa~l~~~l 312 (365)
....+.+++=-++...+....
T Consensus 184 ~~l~~~~~~iP~~lv~~~d~~ 204 (522)
T COG1620 184 RQLPILSLLIPFLLVFLMDGW 204 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666655543
No 36
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=32.19 E-value=1.4e+02 Score=22.67 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHH
Q 017801 52 LMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTK 85 (365)
Q Consensus 52 ~l~Ga~iGv~l~~~lP~~ll~~lf~v~L~~~~~~ 85 (365)
.+.|+..|+++... |.+..+....|.+.+..
T Consensus 38 vLaGTaaGafl~e~---w~iaal~l~~LF~lsl~ 68 (75)
T PF05052_consen 38 VLAGTAAGAFLGEH---WVIAALTLTGLFVLSLT 68 (75)
T ss_pred HHccchHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 78899999888874 66655555555554433
No 37
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=32.01 E-value=1.6e+02 Score=23.71 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 017801 295 VAVATIAAFVGQHVVRKLII 314 (365)
Q Consensus 295 ~~~~~~ga~lGa~l~~~l~~ 314 (365)
++..++|.++|-++=++++.
T Consensus 53 v~pil~G~~lG~WLD~~~~t 72 (100)
T TIGR02230 53 AIPTLLGVAVGIWLDRHYPS 72 (100)
T ss_pred HHHHHHHHHHHHHHHhhcCC
Confidence 33444555555555554443
No 38
>PRK01844 hypothetical protein; Provisional
Probab=31.84 E-value=1.3e+02 Score=22.75 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhH
Q 017801 293 YFVAVATIAAFVGQHVVRKLIILLGR 318 (365)
Q Consensus 293 ~l~~~~~~ga~lGa~l~~~l~~~~lr 318 (365)
...++.++|...|-.++++.-+++++
T Consensus 9 l~I~~li~G~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 9 VGVVALVAGVALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666667777776666655
No 39
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=31.75 E-value=3.9e+02 Score=24.10 Aligned_cols=35 Identities=20% Similarity=0.080 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHH
Q 017801 53 MLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAF 87 (365)
Q Consensus 53 l~Ga~iGv~l~~~lP~~ll~~lf~v~L~~~~~~~~ 87 (365)
+..+++|+.....+|+..++.+++++=++.+.|.+
T Consensus 40 v~~Sl~~~~~l~~ip~~wiLGlLGliPI~lGi~~l 74 (191)
T PF03596_consen 40 VLASLLGAFGLLFIPPEWILGLLGLIPIYLGIKAL 74 (191)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777788866677888888888887644
No 40
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=31.71 E-value=5.3e+02 Score=25.65 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhhHH
Q 017801 221 QLVSYCAFGVLAGIVGGLLGLGGGFIMG 248 (365)
Q Consensus 221 ~~~~~~~~g~~~G~~sgl~GiGGG~i~v 248 (365)
++....+.+++.|.+..+.|+..+.++.
T Consensus 10 ~w~i~l~ls~~~g~l~~~~~vPa~~mlG 37 (352)
T COG3180 10 QWFILLLLSLLGGWLLTLLHVPAAWMLG 37 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4455566777788888888877777666
No 41
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=31.57 E-value=6.3e+02 Score=26.52 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhhcccchh-hHHHHHhhcCCChHHHHHhHHHHHH
Q 017801 227 AFGVLAGIVGGLLGLGGGF-IMGPLFLELGVPPQVSSATATFAMT 270 (365)
Q Consensus 227 ~~g~~~G~~sgl~GiGGG~-i~vP~L~~~g~~~~~A~ats~~~~~ 270 (365)
+.-.+.+|+=|..|.|-.. +..|+|..+|++|-.|+..++....
T Consensus 112 I~~~Fg~flEg~aGFGtpvAI~aplLv~LGf~Pl~Aa~i~Li~ns 156 (530)
T TIGR00795 112 IGFCFGAFLEGAAGFGTPVAITAAILVGLGFKPLYAAGLCLIANT 156 (530)
T ss_pred HHHHHHHHHHHhhccCCcHHHHHHHHHHcCCChHHHHHHHHHHcC
Confidence 4445678999999988876 4566778899999999999887554
No 42
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=30.52 E-value=6e+02 Score=26.23 Aligned_cols=113 Identities=14% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHH---------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCccccc
Q 017801 51 MLMLGISIGVAFNVIFADWM---------VTVLLIVLFIGTSTKAFLKGVETWKRETILKKEAARCLGSNGAGAGEVEYK 121 (365)
Q Consensus 51 ~~l~Ga~iGv~l~~~lP~~l---------l~~lf~v~L~~~~~~~~~k~~~~~k~e~~~~~~~~~~~~~~~~~~~~~~~~ 121 (365)
.+.++..+|+.+|-+.|+.. ...+++-+++..++.-+|| .+
T Consensus 341 ~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk-~~----------------------------- 390 (462)
T COG1113 341 LSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRK-AK----------------------------- 390 (462)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-----------------------------
Q ss_pred CCCCCCCCCCCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017801 122 SLPSGPRSGPQKDAMEPEVTILENINWKELGLLVFVWVAFLGLQIAKNHTASCSIVYWVLDLLQIPVSLVVSLYEAISLY 201 (365)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~yw~~~~~~~~~~~~~~~~~~~~~~ 201 (365)
+++.++...+..-..-.-++.+.++.++...+. ..+...........+...+..++..+-.
T Consensus 391 -------------~~~~~~~~fkm~~~p~~~~l~l~fl~~vlv~m~------~~~~t~~~~~~~~~~~~~l~i~~~~~~~ 451 (462)
T COG1113 391 -------------PAEGKKLKFKMPLYPFTNYLTLAFLAFVLVLML------FDPDTRISLLVGPVWLVLLGIGYLVKRK 451 (462)
T ss_pred -------------hhcccCcccccccccHHHHHHHHHHHHHHHHHH------cCcccchHHHHHHHHHHHHHHHHHHhhh
Q ss_pred hcccccccCCC
Q 017801 202 KGRRVIASKGD 212 (365)
Q Consensus 202 ~~~~~~~~~~~ 212 (365)
+.++...+..+
T Consensus 452 ~~~~~~~~~~~ 462 (462)
T COG1113 452 KKARKARKAPK 462 (462)
T ss_pred hhhhhhhccCC
No 43
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.00 E-value=5.3e+02 Score=25.16 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=46.7
Q ss_pred hhhHHHHHhhcCCChHHHHHhHHHHHHHHHHHHH-HHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 017801 244 GFIMGPLFLELGVPPQVSSATATFAMTFSSSMSV-VEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKLII 314 (365)
Q Consensus 244 G~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~-~~~~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~~l~~ 314 (365)
+.+.-|.+...++|+.-+++......-+++..+. ..|+++|.+|-+..+........=+.++..+...+|.
T Consensus 40 ~~~~~~i~~~~~l~~~c~sa~~~~f~sptag~smL~~~~keg~l~eREvi~~slln~FP~~v~~~~~f~~Pv 111 (311)
T COG3366 40 SKLTKPILRYLNLPEECGSAFATFFVSPTAGNSMLSEFYKEGKLNEREVIVASLLNAFPTGVRHAFTFYAPV 111 (311)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHhChhhhHHHHHHHHHcCCCcHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3456788877888888888876655555555544 4678888888888776666555555555544444443
No 44
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=29.92 E-value=2.3e+02 Score=25.65 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017801 294 FVAVATIAAFVGQHVVRK 311 (365)
Q Consensus 294 l~~~~~~ga~lGa~l~~~ 311 (365)
..+.-++.+++++.+..+
T Consensus 73 iIvFllLTaPVaSHaIAR 90 (197)
T PRK12585 73 AVLFIFLTTPVASHLINR 90 (197)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334446677777666554
No 45
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=29.17 E-value=1.9e+02 Score=22.83 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhHHH------HHHHHHHHHH
Q 017801 67 ADWMVTVLLIVLFIGTSTKA------FLKGVETWKR 96 (365)
Q Consensus 67 P~~ll~~lf~v~L~~~~~~~------~~k~~~~~k~ 96 (365)
|+| +.++.+++|+|-+-|. +-|+.+.+|+
T Consensus 7 ~eL-lIIlvIvLLlFG~kKLPelgr~LGkaireFKk 41 (89)
T PRK03554 7 WQL-LIIAVIVVLLFGTKKLGSIGSDLGASIKGFKK 41 (89)
T ss_pred HHH-HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHH
Confidence 344 4445555555554332 4444444443
No 46
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=28.26 E-value=1.5e+02 Score=24.60 Aligned_cols=54 Identities=11% Similarity=-0.068 Sum_probs=36.6
Q ss_pred CCccchhHHHHHhhH---HHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhhHHHHHHH
Q 017801 37 MPIIDYDLALLIQPM---LMLGISIGVAFNVI-FADWMVTVLLIVLFIGTSTKAFLKG 90 (365)
Q Consensus 37 ~plId~~l~lil~P~---~l~Ga~iGv~l~~~-lP~~ll~~lf~v~L~~~~~~~~~k~ 90 (365)
||.+=|-.+..+.-. -+++......-... +|+.+-.++-..++.|.+.|++-|.
T Consensus 62 RP~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~vpe~lw~Llg~~vlgy~~~Rs~eK~ 119 (123)
T PF11351_consen 62 RPALGWVCLLLFAWAFMLDPLWFWARMQAQALQVPEPLWWLLGAGVLGYFGARSQEKR 119 (123)
T ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCHHHHHHHHHHHhhhHHHhhHHHH
Confidence 899999876655543 33344444344445 8998777776888899888877664
No 47
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=27.73 E-value=3.3e+02 Score=22.04 Aligned_cols=26 Identities=12% Similarity=-0.026 Sum_probs=15.0
Q ss_pred HHHHHHhhhcCCCCCCCccchhHHHH
Q 017801 22 STVYYNLKLRHPTLDMPIIDYDLALL 47 (365)
Q Consensus 22 ~~~~~~~~k~hP~~~~plId~~l~li 47 (365)
-+.+-+++|++|..++..-..+....
T Consensus 44 ~~ll~~i~~~~~Fs~~n~~~l~~ig~ 69 (136)
T PF11188_consen 44 RRLLRNIQKGKPFSPENIRRLRRIGW 69 (136)
T ss_pred HHHHHHHHCCCcchHHHHHHHHHHHH
Confidence 34455557888887655544444433
No 48
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=27.30 E-value=1.9e+02 Score=23.34 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=16.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHhHH
Q 017801 46 LLIQPMLMLGISIGVAFNVIFAD 68 (365)
Q Consensus 46 lil~P~~l~Ga~iGv~l~~~lP~ 68 (365)
.-+.-.+++|+.+|.+|-..+|.
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t 72 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPS 72 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Confidence 34556677888888888888864
No 49
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=25.46 E-value=2.4e+02 Score=19.57 Aligned_cols=26 Identities=15% Similarity=0.404 Sum_probs=20.4
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHhHH
Q 017801 43 DLALLIQPMLMLGISIGVAFNVIFAD 68 (365)
Q Consensus 43 ~l~lil~P~~l~Ga~iGv~l~~~lP~ 68 (365)
.+..-+.-.+++|..+|-++-..+..
T Consensus 5 ~lg~~~~~~i~~g~~~G~~lD~~~~t 30 (55)
T PF09527_consen 5 QLGFTMAAPILVGFFLGYWLDKWFGT 30 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34566777788999999999888876
No 50
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=25.34 E-value=4e+02 Score=22.16 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=35.6
Q ss_pred hhcCCCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhHHHH
Q 017801 29 KLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFADWM 70 (365)
Q Consensus 29 ~k~hP~~~~plId~~l~lil~P~~l~Ga~iGv~l~~~lP~~l 70 (365)
-.+||-.-|++-.=++.+...-...+|.++|..++-++..|.
T Consensus 11 LN~ePvV~rGlT~~El~~~a~~~~~~g~~~gl~la~~~g~~a 52 (121)
T PF11990_consen 11 LNREPVVFRGLTADELGLAAGVGFVAGLVVGLPLALLTGWWA 52 (121)
T ss_pred hcCCCCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888999999999999999999999999888876663
No 51
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=25.15 E-value=1.8e+02 Score=22.10 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=31.2
Q ss_pred cchhHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 017801 40 IDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFI 80 (365)
Q Consensus 40 Id~~l~lil~P~~l~Ga~iGv~l~~~lP~~ll~~lf~v~L~ 80 (365)
|=.-..+=+..++.++..+|.++...+|+..+..+-++++.
T Consensus 35 V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl 75 (78)
T PF01169_consen 35 VFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFL 75 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 44455556677788999999999999999988776665544
No 52
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=24.77 E-value=2.7e+02 Score=28.78 Aligned_cols=12 Identities=42% Similarity=0.636 Sum_probs=9.0
Q ss_pred HhhhcCCCCCCC
Q 017801 27 NLKLRHPTLDMP 38 (365)
Q Consensus 27 ~~~k~hP~~~~p 38 (365)
.+|+|+|+.+||
T Consensus 384 ~lr~k~p~~~rp 395 (507)
T TIGR00910 384 VLILKHPDLKRT 395 (507)
T ss_pred HHHHhcCCCCCC
Confidence 357888888776
No 53
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=24.56 E-value=6.2e+02 Score=24.16 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=44.1
Q ss_pred hhcCCChHHHHHhHHHHHHHHHHHHHH-HHHHcC----CCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Q 017801 252 LELGVPPQVSSATATFAMTFSSSMSVV-EYYLLK----RFPVPYALYFVAVATIAAFVGQHVVRKLIILLGRASLIIFI 325 (365)
Q Consensus 252 ~~~g~~~~~A~ats~~~~~~~s~~~~~-~~~~~g----~v~~~~~~~l~~~~~~ga~lGa~l~~~l~~~~lr~~~~~~l 325 (365)
+++|++.++|.=-|-+...++...+.. ...+.+ ..|+.....-.+.+++-+++.-+...++-++.--..|+.+.
T Consensus 178 lllG~~r~~AaefSFlLaIP~m~GA~~l~l~k~~~~~~~~~~~~l~vg~i~AFvv~~~~I~~ll~~i~~~~~~~F~~Yr 256 (270)
T COG1968 178 LLLGLSREAAAEFSFLLAIPAMFGASALDLFKSGDALSAADLPILLVGFIVAFVVSLIAIKFLLRFIKRHSFIPFAIYR 256 (270)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeehHHHH
Confidence 357999888888888888887666554 334433 23455455555555666666655555554444333454443
No 54
>PRK00523 hypothetical protein; Provisional
Probab=23.92 E-value=2.1e+02 Score=21.64 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhH
Q 017801 294 FVAVATIAAFVGQHVVRKLIILLGR 318 (365)
Q Consensus 294 l~~~~~~ga~lGa~l~~~l~~~~lr 318 (365)
..++.++|...|-.++++.-+++++
T Consensus 11 ~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666666655
No 55
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=23.75 E-value=1.4e+02 Score=20.43 Aligned_cols=26 Identities=15% Similarity=0.483 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017801 179 WVLDLLQIPVSLVVSLYEAISLYKGR 204 (365)
Q Consensus 179 w~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (365)
|+.+.+.+.+.+.+++|+...+|++-
T Consensus 4 wlt~iFsvvIil~If~~iGl~IyQki 29 (49)
T PF11044_consen 4 WLTTIFSVVIILGIFAWIGLSIYQKI 29 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777788888888877543
No 56
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=23.58 E-value=2.2e+02 Score=24.76 Aligned_cols=50 Identities=26% Similarity=0.353 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCCCccchhhHHHHHHHHHHHHHHHHhhhcccchhh
Q 017801 185 QIPVSLVVSLYEAISLYKGRRVIASKGDDGKSFRVFQLVSYCAFGVLAGIVGGLLGLGGGFI 246 (365)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~i 246 (365)
-+|..+++..+.++++...+... +...+ ..+++-+.=|..|++|+.-|++
T Consensus 70 GiP~~lG~~~f~~~y~l~~~~~~----------dvP~~--~~~~~S~~~Fg~gllGisYGil 119 (153)
T PF11947_consen 70 GIPTALGVAVFVVFYYLKSRQIV----------DVPPW--AVLLVSLVFFGLGLLGISYGIL 119 (153)
T ss_pred chHHHHHHHHHHHHHHHHhcccc----------ccCch--HHHHHHHHHHHHHHHhhhhhhc
Confidence 35666666666555554333221 11122 2233444456678888887765
No 57
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=23.53 E-value=2.3e+02 Score=29.03 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=9.8
Q ss_pred HhhhcCCCCCCC
Q 017801 27 NLKLRHPTLDMP 38 (365)
Q Consensus 27 ~~~k~hP~~~~p 38 (365)
.+|+|||+.+||
T Consensus 411 ~lR~~~p~~~rp 422 (501)
T TIGR00911 411 WLRYKRPEMNRP 422 (501)
T ss_pred heeccCCCCCCC
Confidence 458899998887
No 58
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=23.40 E-value=3.9e+02 Score=24.77 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 017801 288 VPYALYFVAVATIAAFVGQHVVRKL 312 (365)
Q Consensus 288 ~~~~~~l~~~~~~ga~lGa~l~~~l 312 (365)
|+....+.+|+++|+.+|......-
T Consensus 9 ~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 9 LRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888999999888665443
No 59
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=23.13 E-value=2.9e+02 Score=24.60 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=32.2
Q ss_pred CCccchhHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHH
Q 017801 37 MPIIDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLK 89 (365)
Q Consensus 37 ~plId~~l~lil~P~~l~Ga~iGv~l~~~lP~~ll~~lf~v~L~~~~~~~~~k 89 (365)
+....|.+..=+ -.=++-...|+++-..+ +.+..+++++|+++++|+++.
T Consensus 31 ~kal~~Gi~~A~-~lR~~~i~~~~~ll~~~--~~i~~igG~~Ll~~a~k~~~~ 80 (183)
T PF03741_consen 31 RKALFWGIIGAI-VLRIIFIFLASWLLSIF--PWILLIGGLFLLYIAIKLLHE 80 (183)
T ss_pred hhhHHHhHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 456666665432 12223334555555554 568899999999999998864
No 60
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=22.90 E-value=2.2e+02 Score=25.43 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHhhcCCChHHHHHhHHHHHH
Q 017801 225 YCAFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMT 270 (365)
Q Consensus 225 ~~~~g~~~G~~sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~ 270 (365)
++.++|..|+++|++|-=||.+.--.|...+.++...+|--..+.+
T Consensus 133 lPTV~FVSGiiGg~LGGiGGalvY~aL~~~~~t~~~gvA~m~AvG~ 178 (230)
T COG4060 133 LPTVSFVSGIIGGLLGGIGGALVYYALYKVGLTMSAGVAGMLAVGF 178 (230)
T ss_pred CceeeeehhhhhhhhcCccchhhHHHHHHHhcccchHHHHHHHHHH
Confidence 3456788888888887444444444444556665555544444433
No 61
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=22.76 E-value=4.7e+02 Score=26.23 Aligned_cols=77 Identities=13% Similarity=0.032 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHhhHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHhhHHHH
Q 017801 11 CLACMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLALLIQPMLMLGISIGVA---FNVIFADWMVTVLLIVLFIGTSTKAF 87 (365)
Q Consensus 11 lS~~~I~g~sl~~~~~~~~k~hP~~~~plId~~l~lil~P~~l~Ga~iGv~---l~~~lP~~ll~~lf~v~L~~~~~~~~ 87 (365)
..-..+.-+++.+.+.--.+-|||++|+. .-+..-.-.-++-.+.+.. +-..+|..++..+-.+-|+-+-...+
T Consensus 257 fGg~~~nlAaitaAIc~g~eah~dp~rRy---~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~~sl 333 (378)
T PF03594_consen 257 FGGHAVNLAAITAAICAGPEAHPDPSRRY---IAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLGGSL 333 (378)
T ss_pred hchhhhHHHHHHHHHHcCCccCCCcccch---HHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 33344444566666666688999987754 3443333333333333333 23467998888887777776665555
Q ss_pred HHH
Q 017801 88 LKG 90 (365)
Q Consensus 88 ~k~ 90 (365)
..+
T Consensus 334 ~~A 336 (378)
T PF03594_consen 334 QTA 336 (378)
T ss_pred HHH
Confidence 544
No 62
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.45 E-value=4.4e+02 Score=21.64 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=34.2
Q ss_pred hcCCCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhHHHHH
Q 017801 30 LRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFADWMV 71 (365)
Q Consensus 30 k~hP~~~~plId~~l~lil~P~~l~Ga~iGv~l~~~lP~~ll 71 (365)
.+||..-|++-.=++.....-...+|.++|..+...+-.|..
T Consensus 9 N~ePvV~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~ 50 (111)
T TIGR03750 9 NREPVVFRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWAL 50 (111)
T ss_pred cCCCceecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777789999999999999999999999888666665654
No 63
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=22.41 E-value=3.4e+02 Score=23.73 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017801 53 MLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKGVETWKR 96 (365)
Q Consensus 53 l~Ga~iGv~l~~~lP~~ll~~lf~v~L~~~~~~~~~k~~~~~k~ 96 (365)
++|+..|.-...++-..+-.+++..+|....|+.+.+.+..++.
T Consensus 9 ~~~~~~~~~~~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~ 52 (173)
T PRK13453 9 VLGAAGGVEWGTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRER 52 (173)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45665555444444444445555566666677777776665443
No 64
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=21.92 E-value=5.4e+02 Score=22.46 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=29.8
Q ss_pred HHHhhcCCChHHHHHhHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 017801 249 PLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKLII 314 (365)
Q Consensus 249 P~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~~l~~ 314 (365)
|++...-++.+.|..++.+..+..+... .-|.+...... +++.+|+...++..+
T Consensus 73 ~~l~~~l~~~~~ai~~~~~~sl~~~~~~--------~~~~~~~~~~l----~~~~~~~~~~~~~~~ 126 (194)
T PF07698_consen 73 AMLLTILIDPRLAILASLFLSLLASLLF--------GFDFEFFLYSL----VSGIVAIFSVRRIRS 126 (194)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHh--------cccHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3333445677888877777666665442 33444444444 455555555555544
No 65
>PRK12600 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=21.48 E-value=4.2e+02 Score=20.99 Aligned_cols=53 Identities=9% Similarity=0.061 Sum_probs=39.5
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 017801 258 PQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVR 310 (365)
Q Consensus 258 ~~~A~ats~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~ 310 (365)
+...+|...+.....++.+............+.++.+++.+++|+..=+|...
T Consensus 31 ~DRvvAlD~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fv~tva~Aryl~ 83 (94)
T PRK12600 31 ADRVVALDAIGINLIAIIALFSILLDTKAYLEVILLIGILAFIGTAAFSKFIE 83 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888877777777777777777767778888888888888776665543
No 66
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=21.19 E-value=2.4e+02 Score=28.64 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=19.8
Q ss_pred HhhhcCCCCCCCccc--hhH-HHHHhhHHHHHHHHHHHHH
Q 017801 27 NLKLRHPTLDMPIID--YDL-ALLIQPMLMLGISIGVAFN 63 (365)
Q Consensus 27 ~~~k~hP~~~~plId--~~l-~lil~P~~l~Ga~iGv~l~ 63 (365)
.+|+|||+.+||-=- .+. ...+....++...+...+.
T Consensus 381 ~lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~~ 420 (474)
T TIGR03813 381 YLRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVLS 420 (474)
T ss_pred HHHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHHHhee
Confidence 447788888776222 222 2345555555555554443
No 67
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.19 E-value=1.4e+02 Score=23.71 Aligned_cols=11 Identities=36% Similarity=0.519 Sum_probs=4.7
Q ss_pred HHHHHHHHHhh
Q 017801 73 VLLIVLFIGTS 83 (365)
Q Consensus 73 ~lf~v~L~~~~ 83 (365)
++|+++|++.+
T Consensus 11 l~LA~lLlisS 21 (95)
T PF07172_consen 11 LLLAALLLISS 21 (95)
T ss_pred HHHHHHHHHHh
Confidence 34444444433
No 68
>PRK13682 hypothetical protein; Provisional
Probab=20.79 E-value=3.1e+02 Score=19.29 Aligned_cols=42 Identities=24% Similarity=0.457 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 017801 289 PYALYFVAVATIAAFVGQHVVRKLIILLGRASLIIFILAFMI 330 (365)
Q Consensus 289 ~~~~~l~~~~~~ga~lGa~l~~~l~~~~lr~~~~~~ll~~~i 330 (365)
++++.+.+.+++.+.+|-.-........-|..|.+++..+++
T Consensus 3 ~waliFliiA~iA~~lGF~GiAg~aa~iAkiLF~iflvl~vv 44 (51)
T PRK13682 3 KWAIIFLVIALIAAVLGFGGIAGAAAGIAKILFFIFLVLFVV 44 (51)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888876555555556666667666554443
No 69
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.70 E-value=9.7e+02 Score=24.95 Aligned_cols=32 Identities=13% Similarity=-0.039 Sum_probs=20.3
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 017801 279 EYYLLKRFPVPYALYFVAVATIAAFVGQHVVR 310 (365)
Q Consensus 279 ~~~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~ 310 (365)
.|.+.|--+|-.-..+...-+.+...|.....
T Consensus 350 ~Y~r~gG~~Wik~m~lta~Lfp~~~~~t~~~~ 381 (593)
T KOG1277|consen 350 FYARLGGRRWIKNMLLTASLFPVPVFGTAFLL 381 (593)
T ss_pred eeehhccHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 45566666777666666666666666665544
Done!