Query 017801
Match_columns 365
No_of_seqs 329 out of 1731
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 05:10:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 29.4 2.2E+02 0.0074 27.3 9.4 12 27-38 391-402 (511)
2 2o9g_A Aquaporin Z; integral m 13.9 2.7E+02 0.0094 24.3 5.7 35 278-312 71-105 (234)
3 2w2e_A AQY1, aquaporin, aquapo 13.3 2.8E+02 0.0096 25.1 5.7 34 279-312 118-151 (279)
4 1j4n_A Aquaporin 1; membrane p 13.2 2.9E+02 0.0098 24.9 5.7 35 278-312 83-117 (271)
5 3gd8_A Aquaporin-4; proton exc 13.1 3E+02 0.01 23.9 5.7 33 280-312 73-105 (223)
6 3llq_A Aquaporin Z 2; aquapori 13.0 2.7E+02 0.0092 24.9 5.4 34 279-312 97-130 (256)
7 3d9s_A Aquaporin-5, AQP-5; aqu 12.9 2.9E+02 0.01 24.8 5.7 34 279-312 76-109 (266)
8 2f2b_A Aquaporin AQPM; protein 12.4 2.9E+02 0.0098 24.4 5.4 34 279-312 88-121 (246)
9 3cn5_A Aquaporin; membrane pro 12.3 3.1E+02 0.011 25.2 5.7 35 278-312 129-163 (304)
10 3c02_A Aquaglyceroporin; membr 12.3 3.3E+02 0.011 24.2 5.8 42 277-318 74-115 (258)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=29.35 E-value=2.2e+02 Score=27.33 Aligned_cols=12 Identities=42% Similarity=0.647 Sum_probs=8.1
Q ss_pred HhhhcCCCCCCC
Q 017801 27 NLKLRHPTLDMP 38 (365)
Q Consensus 27 ~~~k~hP~~~~p 38 (365)
.+|+|+|+.+||
T Consensus 391 ~~r~~~~~~~~~ 402 (511)
T 4djk_A 391 VLVLKHPDLKRT 402 (511)
T ss_dssp HHHHHCCSCCCS
T ss_pred HHHHhCCCCCCC
Confidence 347788876665
No 2
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=13.92 E-value=2.7e+02 Score=24.34 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=27.7
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 017801 278 VEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 312 (365)
Q Consensus 278 ~~~~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~~l 312 (365)
+.....|+++|..+....+.-++|+++|+.+.+.+
T Consensus 71 la~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 105 (234)
T 2o9g_A 71 IGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI 105 (234)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456688899999999898899999998877654
No 3
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=13.31 E-value=2.8e+02 Score=25.09 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=24.1
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 017801 279 EYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 312 (365)
Q Consensus 279 ~~~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~~l 312 (365)
.....|+++|..+....+.-++|+++|+.+...+
T Consensus 118 a~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 151 (279)
T 2w2e_A 118 ALVLARAIPPFRGILMAFTQIVAGMAAAGAASAM 151 (279)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445577778777777777778888877766543
No 4
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=13.16 E-value=2.9e+02 Score=24.86 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=28.4
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 017801 278 VEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 312 (365)
Q Consensus 278 ~~~~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~~l 312 (365)
+.....|+++|..+....+.-++|+++|+.+...+
T Consensus 83 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 117 (271)
T 1j4n_A 83 LGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGI 117 (271)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455688999999999999999999998887654
No 5
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=13.13 E-value=3e+02 Score=23.88 Aligned_cols=33 Identities=9% Similarity=0.401 Sum_probs=26.6
Q ss_pred HHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 017801 280 YYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 312 (365)
Q Consensus 280 ~~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~~l 312 (365)
....|+++|..+....+.-++|+++|+.+.+.+
T Consensus 73 ~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~ 105 (223)
T 3gd8_A 73 MVCTRKISIAKSVFYIAAQCLGAIIGAGILYLV 105 (223)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445688999999999999999999998877643
No 6
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=13.00 E-value=2.7e+02 Score=24.94 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=26.8
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 017801 279 EYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 312 (365)
Q Consensus 279 ~~~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~~l 312 (365)
.....|.++|..+....+.-++|+++|+.+...+
T Consensus 97 a~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 130 (256)
T 3llq_A 97 GLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVI 130 (256)
T ss_dssp HHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445588889888888888889999888877654
No 7
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=12.93 E-value=2.9e+02 Score=24.75 Aligned_cols=34 Identities=15% Similarity=0.332 Sum_probs=27.9
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 017801 279 EYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 312 (365)
Q Consensus 279 ~~~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~~l 312 (365)
.....|+++|..+....+.-++|+++|+.+...+
T Consensus 76 a~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~ 109 (266)
T 3d9s_A 76 ALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV 109 (266)
T ss_dssp HHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455688999999999999999999998887754
No 8
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=12.37 E-value=2.9e+02 Score=24.36 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=26.1
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 017801 279 EYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 312 (365)
Q Consensus 279 ~~~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~~l 312 (365)
.....|+++|..+....+.-++|+++|+.+.+.+
T Consensus 88 a~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 121 (246)
T 2f2b_A 88 GLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQC 121 (246)
T ss_dssp HHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445678888888888888888888888776654
No 9
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=12.34 E-value=3.1e+02 Score=25.22 Aligned_cols=35 Identities=17% Similarity=0.386 Sum_probs=28.7
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 017801 278 VEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 312 (365)
Q Consensus 278 ~~~~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~~l 312 (365)
+.....|+++|..+....+.-++|+++|+.+...+
T Consensus 129 la~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~ 163 (304)
T 3cn5_A 129 FGLFLARKVELLRALVYMIAQCLGAICGVGLVKAF 163 (304)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556688999999999999999999999887754
No 10
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=12.31 E-value=3.3e+02 Score=24.23 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Q 017801 277 VVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKLIILLGR 318 (365)
Q Consensus 277 ~~~~~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~~l~~~~lr 318 (365)
++.....|+++|..+....+.-++|+++|+.+...+-.+..+
T Consensus 74 Tla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~ 115 (258)
T 3c02_A 74 SIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFIS 115 (258)
T ss_dssp HHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcchhhh
Done!