Query 017801
Match_columns 365
No_of_seqs 329 out of 1731
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 05:10:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017801.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017801hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 24.4 1.3E+02 0.0098 25.0 8.9 17 246-262 46-62 (447)
2 d1ymga1 f.19.1.1 (A:6-239) Aqu 20.2 73 0.0053 25.8 5.7 36 278-313 68-103 (234)
3 d1cola_ f.1.1.1 (A:) Colicin A 13.0 42 0.0031 27.0 2.1 21 295-315 174-194 (197)
4 d1fx8a_ f.19.1.1 (A:) Glycerol 12.7 1.7E+02 0.013 23.6 6.3 36 277-312 67-102 (254)
5 d1rc2a_ f.19.1.1 (A:) Aquapori 12.3 1E+02 0.0075 24.6 4.6 34 281-314 71-104 (231)
6 d1j4na_ f.19.1.1 (A:) Aquapori 11.6 1.6E+02 0.012 23.7 5.7 35 279-313 84-118 (249)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 8.9 2.8E+02 0.021 18.8 5.9 7 215-221 73-79 (100)
8 d2ct5a1 g.37.1.6 (A:8-67) Zinc 8.3 56 0.0041 21.0 0.9 16 19-34 36-51 (60)
9 d1q90r_ f.23.12.1 (R:) ISP sub 7.3 1.2E+02 0.0089 17.6 2.1 23 218-240 8-30 (39)
10 d2iuba2 f.17.3.1 (A:286-349) M 7.2 21 0.0015 23.2 -1.7 18 44-61 12-29 (64)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=24.43 E-value=1.3e+02 Score=24.99 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=10.9
Q ss_pred hHHHHHhhcCCChHHHH
Q 017801 246 IMGPLFLELGVPPQVSS 262 (365)
Q Consensus 246 i~vP~L~~~g~~~~~A~ 262 (365)
+..|.+...|++..+..
T Consensus 46 ~~~p~~~~~g~s~~~~g 62 (447)
T d1pw4a_ 46 LAMPYLVEQGFSRGDLG 62 (447)
T ss_dssp HHHHHTTSSTTCSSCHH
T ss_pred HHHHHHHHhCcCHHHHH
Confidence 45677766777766543
No 2
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.23 E-value=73 Score=25.85 Aligned_cols=36 Identities=11% Similarity=0.281 Sum_probs=30.4
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHhH
Q 017801 278 VEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKLI 313 (365)
Q Consensus 278 ~~~~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~~l~ 313 (365)
+.+...|+++|...+...+.-++|+.+|+.+.+.+.
T Consensus 68 la~~~~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~ 103 (234)
T d1ymga1 68 FAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVT 103 (234)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhccCCChhheeeeeehHHHHHHHHHHHHHHHc
Confidence 455667899999999999999999999998887653
No 3
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=13.05 E-value=42 Score=27.02 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 017801 295 VAVATIAAFVGQHVVRKLIIL 315 (365)
Q Consensus 295 ~~~~~~ga~lGa~l~~~l~~~ 315 (365)
.+.+++|+++...++..+.+.
T Consensus 174 li~~~v~alIdd~~~~~iN~~ 194 (197)
T d1cola_ 174 LLAAVVGALIDDKFADALNNE 194 (197)
T ss_dssp HHHHHHHHHHCTHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 345556666666666665543
No 4
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=12.75 E-value=1.7e+02 Score=23.62 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=30.3
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 017801 277 VVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 312 (365)
Q Consensus 277 ~~~~~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~~l 312 (365)
++..+..|+++|.......+.-++|+.+|+.+...+
T Consensus 67 Tla~~i~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 102 (254)
T d1fx8a_ 67 TIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL 102 (254)
T ss_dssp HHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566789999999999999999999999887654
No 5
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=12.29 E-value=1e+02 Score=24.59 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=29.7
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 017801 281 YLLKRFPVPYALYFVAVATIAAFVGQHVVRKLII 314 (365)
Q Consensus 281 ~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~~l~~ 314 (365)
...|+++|+.+....+.-++|+.+|+.+.+-+..
T Consensus 71 ~~~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~i~~ 104 (231)
T d1rc2a_ 71 WAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIAS 104 (231)
T ss_dssp HHTTCSCTTTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999998876643
No 6
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.62 E-value=1.6e+02 Score=23.69 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=29.7
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHhH
Q 017801 279 EYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKLI 313 (365)
Q Consensus 279 ~~~~~g~v~~~~~~~l~~~~~~ga~lGa~l~~~l~ 313 (365)
..+..|+++|.......+.-++|+.+|+.+.+.+-
T Consensus 84 a~~~~g~i~~~~~~~Yi~aQ~lGa~~g~~~~~~~~ 118 (249)
T d1j4na_ 84 GLLLSCQISVLRAIMYIIAQCVGAIVATAILSGIT 118 (249)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccccchhheeeeeeHHHHHHHHHHhhheeec
Confidence 45556899999999999999999999998877654
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.91 E-value=2.8e+02 Score=18.76 Aligned_cols=7 Identities=0% Similarity=0.259 Sum_probs=2.9
Q ss_pred ccchhhH
Q 017801 215 KSFRVFQ 221 (365)
Q Consensus 215 ~~~~~~~ 221 (365)
.-|+.-.
T Consensus 73 iiWTviP 79 (100)
T d3dtub2 73 IAWTIVP 79 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3454333
No 8
>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.34 E-value=56 Score=21.03 Aligned_cols=16 Identities=31% Similarity=0.598 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhhcCCC
Q 017801 19 AAVSTVYYNLKLRHPT 34 (365)
Q Consensus 19 ~sl~~~~~~~~k~hP~ 34 (365)
|...|+-.++++|||.
T Consensus 36 GNTtNl~~HL~~rHp~ 51 (60)
T d2ct5a1 36 GNTSNLSYHLEKNHPE 51 (60)
T ss_dssp SSTHHHHHHHHHSCHH
T ss_pred CCcchHHHHHHhcCHH
Confidence 3467899999999985
No 9
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.29 E-value=1.2e+02 Score=17.61 Aligned_cols=23 Identities=9% Similarity=-0.117 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhc
Q 017801 218 RVFQLVSYCAFGVLAGIVGGLLG 240 (365)
Q Consensus 218 ~~~~~~~~~~~g~~~G~~sgl~G 240 (365)
..+++.-+..+|.+++-..|+.+
T Consensus 8 grR~~MNLll~G~~~~~~~g~l~ 30 (39)
T d1q90r_ 8 NKRNIMNLILAGGAGLPITTLAL 30 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccchhhhhhcc
Confidence 45556666667777777666544
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=7.23 E-value=21 Score=23.15 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=12.5
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 017801 44 LALLIQPMLMLGISIGVA 61 (365)
Q Consensus 44 l~lil~P~~l~Ga~iGv~ 61 (365)
+..++.|++++.++.|--
T Consensus 12 it~iflP~t~i~gifGMN 29 (64)
T d2iuba2 12 IATIFMPLTFIAGIYGMN 29 (64)
T ss_dssp HHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHhhhccC
Confidence 456788888888888843
Done!