BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017802
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 137/335 (40%), Positives = 197/335 (58%), Gaps = 39/335 (11%)
Query: 34 AFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFN 93
A VC + + + G + K E+A++ + E++IGT+ GGMDQ+IS +A+ G A+LI+F+
Sbjct: 169 ALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFS 228
Query: 94 PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAI 153
P+R TDV+LP+G FV+A+S E KA A S++N RV+ECRL A +LA ++
Sbjct: 229 PLRATDVKLPSGAVFVIANSCVEMNKA--ATSHFNIRVMECRLAAKLLAKYKSLQ----W 282
Query: 154 SKVKTLSDVEGLCVAFACKNGSS--DPVFAVKEFLRKEPYTALDIEKIT----EEKLTSI 207
KV L +V+ K G S + + ++ L EPY +I + EE T I
Sbjct: 283 DKVLRLEEVQA-------KLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQI 335
Query: 208 FANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLRLLCSE--EDKLKKLG 265
S ++ DVL +KL+QRA HVYSEA RV FK +C E E+ ++ LG
Sbjct: 336 L--SPNTQDVL----IFKLYQRAKHVYSEAARVLQFKK--------ICEEAPENMVQLLG 381
Query: 266 DLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFI 325
+LMN SH SC +YECSCPEL++LV++CR GA G+RLTGAGWGGC V++V F+
Sbjct: 382 ELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFL 441
Query: 326 LNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGA 360
N+ + +YQ R D + +FA+KP GA
Sbjct: 442 ANVHKAYYQ-RSDGSLAPEKQ---SLFATKPGGGA 472
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 122/374 (32%), Positives = 193/374 (51%), Gaps = 60/374 (16%)
Query: 34 AFVCSSTVALMAA---FGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI 90
AF+C+ +A++ A G + K+ + ++T E ++G +GGMDQA S+ + A +
Sbjct: 193 AFICAVALAVVKANMGPGYHMSKQNLMRITVVAEHYVGVNNGGMDQAASVCGEEDHALYV 252
Query: 91 DFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145
+F P ++ T + P +FV+A++L S K TA +NYN RVVE A VLA
Sbjct: 253 EFKPQLKATPFKFPQLKNHEISFVIANTLVVSNKFETAPTNYNLRVVEVTTAANVLAATY 312
Query: 146 G---MKPQEAISKVK-TLSDVEGLCVAFACKNGSSDP---------------VFAVKEFL 186
G + +E S K L D + V +A + S P + V+E L
Sbjct: 313 GVVLLSGKEGSSTNKGNLRDF--MNVYYARYHNISTPWNGDIESGIERLTKMLVLVEESL 370
Query: 187 --RKEPYTALDI--------EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE 236
+K+ ++ D+ E+ T + LT+ S VL KL+QRA HVYSE
Sbjct: 371 ANKKQGFSVDDVAQSLNCSREEFTRDYLTT----SPVRFQVL------KLYQRAKHVYSE 420
Query: 237 AKRV-HAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN 295
+ RV A K +++ ++ED K+ G LMN+S SC LYECSCPE++++ ++ +
Sbjct: 421 SLRVLKAVKLMTTASF---TADEDFFKQFGALMNESQASCDKLYECSCPEIDKICSIALS 477
Query: 296 NGALGARLTGAGWGGCVVALVKESIDSQFILNLKE----QFYQSRIDRGVINNNDLGLYV 351
NG+ G+RLTGAGWGGC V LV + I +KE +FY+ + + I + +L +
Sbjct: 478 NGSYGSRLTGAGWGGCTVHLVPGGPNGN-IEKVKEALANEFYKVKYPK--ITDAELENAI 534
Query: 352 FASKPSSGAAKFKF 365
SKP+ G+ ++
Sbjct: 535 IVSKPALGSCLYEL 548
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p
pdb|3V5R|B Chain B, Crystal Structure Of The Unliganded Form Of Gal3p
Length = 505
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 176/366 (48%), Gaps = 54/366 (14%)
Query: 33 TAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAEL 89
+AF C++ +A + A ++ KK++ ++T E ++G +GGMDQA S+ + A
Sbjct: 149 SAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALY 208
Query: 90 IDFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144
++F P ++ T + P +FV+A++L +S K TA +NYN RV+E + A LA +
Sbjct: 209 VEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATR 268
Query: 145 LGMK-PQEAISKVKTLSDVEGLCVAFACK--------NGS--------------SDPVFA 181
+ P + ++ A+ + NG + F+
Sbjct: 269 YSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFS 328
Query: 182 VKE--FLRKEPYTALDI--EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEA 237
K+ F E TAL+ E+ T + LT+ VL KL+QRA HVYSE+
Sbjct: 329 RKKSGFTVHEASTALNCSREEFTRDYLTTF----PVRFQVL------KLYQRAKHVYSES 378
Query: 238 KRV-HAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNN 296
RV A K S+ ++ED G LMN+S SC LYECSC E ++ ++ N
Sbjct: 379 LRVLKALKMMTSATFH---TDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALAN 435
Query: 297 GALGARLTGAGWGGCVVALVKESIDS---QFILNLKEQFYQSRIDRGVINNNDLGLYVFA 353
G+ G+RLTGAGWGGC + LV + Q L E+FY R + + +L +
Sbjct: 436 GSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPD--LTDEELKDAIIV 493
Query: 354 SKPSSG 359
SKP+ G
Sbjct: 494 SKPALG 499
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|D Chain D, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 520
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 176/366 (48%), Gaps = 54/366 (14%)
Query: 33 TAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAEL 89
+AF C++ +A + A ++ KK++ ++T E ++G +GGMDQA S+ + A
Sbjct: 164 SAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALY 223
Query: 90 IDFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144
++F P ++ T + P +FV+A++L +S K TA +NYN RV+E + A LA +
Sbjct: 224 VEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATR 283
Query: 145 LGMK-PQEAISKVKTLSDVEGLCVAFACK--------NGS--------------SDPVFA 181
+ P + ++ A+ + NG + F+
Sbjct: 284 YSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFS 343
Query: 182 VKE--FLRKEPYTALDI--EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEA 237
K+ F E TAL+ E+ T + LT+ VL KL+QRA HVYSE+
Sbjct: 344 RKKSGFTVHEASTALNCSREEFTRDYLTTF----PVRFQVL------KLYQRAKHVYSES 393
Query: 238 KRV-HAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNN 296
RV A K S+ ++ED G LMN+S SC LYECSC E ++ ++ N
Sbjct: 394 LRVLKALKMMTSATFH---TDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALAN 450
Query: 297 GALGARLTGAGWGGCVVALVKESIDS---QFILNLKEQFYQSRIDRGVINNNDLGLYVFA 353
G+ G+RLTGAGWGGC + LV + Q L E+FY R + + +L +
Sbjct: 451 GSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPD--LTDEELKDAIIV 508
Query: 354 SKPSSG 359
SKP+ G
Sbjct: 509 SKPALG 514
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
Complexed With Galactose
Length = 419
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 118/293 (40%), Gaps = 83/293 (28%)
Query: 41 VALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQ-AISIMAKSGFAEL-----IDFN 93
V L F + VP+ E+ QL + E +IG SG +DQ AI GF E+ +D N
Sbjct: 168 VVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAI------GFGEVKKAIELDCN 221
Query: 94 PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAI 153
++ V + +V + + +A+T S YN R E R EA+
Sbjct: 222 TLKYEMVPVELRDYDIVIMNTNKP-RALTE-SKYNERFAETR---------------EAL 264
Query: 154 SKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSS 213
+++T D++ L L E + A + + I +E L
Sbjct: 265 KRMQTRLDIQSLGE------------------LSNEEFDA-NTDLIGDETLI-------- 297
Query: 214 SLDVLNAAKQYKLHQRAAHVYSEAKRVH-AFKDTVSSNLRLLCSEEDKLKKLGDLMNDSH 272
+RA H E R A K V+ NL K G+L+N SH
Sbjct: 298 --------------KRARHAVYENNRTKIAQKAFVAGNL----------TKFGELLNASH 333
Query: 273 HSCSVLYECSCPELEELVNVCRNN-GALGARLTGAGWGGCVVALVKESIDSQF 324
S YE + EL+ L + G LGAR+TGAG+GGC +ALV S F
Sbjct: 334 ASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAF 386
>pdb|2HFU|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
pdb|2HFU|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
Length = 332
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 211 SSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMND 270
++S+ V+N + K Q + KR++ + S R + D L++LG LMN
Sbjct: 198 NASTAKVVNDVHKMKQQQPV-----QFKRLYDNYTHIVSQAREALQKGD-LQRLGQLMNA 251
Query: 271 SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 319
+H C + + SC ELE +V CR GALGA+L+G G GG VAL S
Sbjct: 252 NHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASS 299
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 197 EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA-AHVYSEAKRVHAFKDTVSSNLRLLC 255
++I EE L + SS + + K LH++ +++ E RV +D +
Sbjct: 204 KRIAEESLRILGKESSKEVTEKDLGKLPPLHRKFFSYIVRENARVLEVRDAL-------- 255
Query: 256 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVAL 315
+E ++K+G ++ +H + Y SC EL+ V GA GARLTGAG+GG +AL
Sbjct: 256 -KEGDIEKVGKILTTAHWDLAENYRVSCEELDFFVKKAXELGAYGARLTGAGFGGSAIAL 314
Query: 316 V 316
V
Sbjct: 315 V 315
>pdb|2HFS|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase
pdb|2HFS|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase
Length = 332
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 211 SSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMND 270
++S+ V+N + K Q + KR++ + S R + D L++LG L N
Sbjct: 198 NASTAKVVNDVHKXKQQQPV-----QFKRLYDNYTHIVSQAREALQKGD-LQRLGQLXNA 251
Query: 271 SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 319
+H C + + SC ELE +V CR GALGA+L+G G GG VAL S
Sbjct: 252 NHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASS 299
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 199 ITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA-AHVYSEAKRVHAFKDTVSSNLRLLCSE 257
I EE L + SS + +K LH++ ++ E RV +D + +
Sbjct: 204 IAEESLKILGKGSSKEVREGELSKLPPLHRKFFGYIVRENARVLEVRDAL---------K 254
Query: 258 EDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 316
E ++++G ++ +H + YE SC EL+ V GA GARLTGAG+GG +ALV
Sbjct: 255 EGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAIALV 313
>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase
Length = 324
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 225 KLHQRAAHVYSEAKRVHAFKDTVSSNLRLLCSEEDKLKK---LGDLMNDSHHSCSVLYEC 281
K ++ A + +E ++ KD + + + E K+K G LM +H L
Sbjct: 197 KRKKKTAELVNEVAKIEN-KDEIFKEIDKVIDEALKIKNKEDFGKLMTKNHELLKKL-NI 254
Query: 282 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 316
S P+L+ +V++ N GA+LTGAG GGCV+ LV
Sbjct: 255 STPKLDRIVDIG-NRFGFGAKLTGAGGGGCVIILV 288
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 225 KLHQRAAHVYSEAKRVHAFKDTVSSNLRLLCSEEDKLKK---LGDLMNDSHHSCSVLYEC 281
K ++ A + +E ++ KD + + + E K+K G LM +H L
Sbjct: 200 KRKKKTAELVNEVAKIEN-KDEIFKEIDKVIDEALKIKNKEDFGKLMTKNHELLKKL-NI 257
Query: 282 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 316
S P+L+ +V++ N GA+LTGAG GGCV+ LV
Sbjct: 258 STPKLDRIVDIG-NRFGFGAKLTGAGGGGCVIILV 291
>pdb|2X7I|A Chain A, Crystal Structure Of Mevalonate Kinase From Methicillin-
Resistant Staphylococcus Aureus Mrsa252
Length = 308
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 257 EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 316
E K + L D+ N+ H L S ++E+L+ + + NGA+ +LTGAG GG ++ L
Sbjct: 222 EHHKFEALADIFNECHADLKAL-TVSHDKIEQLMKIGKENGAIAGKLTGAGRGGSMLLLA 280
Query: 317 KE 318
K+
Sbjct: 281 KD 282
>pdb|2OI2|A Chain A, Streptococcus Pneumoniae Mevalonate Kinase In Complex With
Diphosphomevalonate
Length = 292
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 240 VHAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGAL 299
+HA + ++ + S++D + LG +++ +H + S E + LV ++GAL
Sbjct: 193 LHALGE-LTQQAEIAISQKDA-EGLGQILSQAHLHLKEI-GVSSLEADSLVETALSHGAL 249
Query: 300 GARLTGAGWGGCVVALVKESIDSQ 323
GA+++G G GGC++ALV +Q
Sbjct: 250 GAKMSGGGLGGCIIALVTNLTHAQ 273
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
Length = 399
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 85/235 (36%), Gaps = 80/235 (34%)
Query: 63 CEQ----FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQL--PAGGTFVVAHSLAE 116
C+Q F G G DQ IS+ + G A LID + T+ V L P + ++
Sbjct: 177 CQQAEHSFAGXPCGIXDQFISLXGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRH 236
Query: 117 SLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSS 176
SL A+S Y R +C A L +E++ +V+ L ++E
Sbjct: 237 SL----ASSEYPVRRRQCEEVARALG-------KESLREVQ-LEELE------------- 271
Query: 177 DPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE 236
A ++ + KE + +RA HV E
Sbjct: 272 ----AARDLVSKEGF------------------------------------RRARHVVGE 291
Query: 237 AKRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVN 291
+R ++ LR + G L +SH S YE SCPEL++LV
Sbjct: 292 IRRT----AQAAAALR-----RGDYRAFGRLXVESHRSLRDDYEVSCPELDQLVE 337
>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9B|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9B|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9C|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Xl413
Length = 361
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 29/152 (19%)
Query: 114 LAESLKAITAASNYNNRVVECRLTAIVLAI-KLGMKPQEAIS---------KVKTLSDVE 163
L E++ ++ +++ E +++ LA +L + P+E I+ ++ ++++
Sbjct: 12 LYEAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQ 71
Query: 164 GLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 223
L VA G D V VK RK + + + + E S LD+LN+
Sbjct: 72 CLTVA-----GGQDNVMGVKYCFRKNDHVVIAMPYLEHE----------SFLDILNSLSF 116
Query: 224 YKLHQRAAHVYSEAKRVHAF----KDTVSSNL 251
++ + +++ KR+H F +D SN
Sbjct: 117 QEVREYMLNLFKALKRIHQFGIVHRDVKPSNF 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,377,910
Number of Sequences: 62578
Number of extensions: 349697
Number of successful extensions: 973
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 939
Number of HSP's gapped (non-prelim): 30
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)