Query 017802
Match_columns 365
No_of_seqs 159 out of 1426
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:33:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02521 galactokinase 100.0 1E-60 2.2E-65 481.0 34.4 349 13-365 148-496 (497)
2 COG0153 GalK Galactokinase [Ca 100.0 6.7E-59 1.5E-63 442.7 28.9 284 2-363 100-389 (390)
3 PLN02865 galactokinase 100.0 4.6E-53 1E-57 417.0 32.2 295 2-363 114-423 (423)
4 PTZ00290 galactokinase; Provis 100.0 3.4E-53 7.4E-58 421.8 31.2 299 12-365 132-458 (468)
5 PRK05322 galactokinase; Provis 100.0 9.2E-50 2E-54 393.2 32.1 284 3-363 97-387 (387)
6 PRK05101 galactokinase; Provis 100.0 7.9E-50 1.7E-54 393.2 31.2 278 3-362 98-381 (382)
7 PRK00555 galactokinase; Provis 100.0 1E-48 2.3E-53 382.6 30.7 279 3-363 77-362 (363)
8 TIGR00131 gal_kin galactokinas 100.0 2.4E-48 5.1E-53 384.0 29.1 274 13-362 109-385 (386)
9 KOG0631 Galactokinase [Carbohy 100.0 1.9E-44 4E-49 349.0 21.2 344 13-365 141-489 (489)
10 PRK03817 galactokinase; Provis 100.0 1.6E-42 3.4E-47 338.6 30.1 267 12-364 84-351 (351)
11 PLN02677 mevalonate kinase 100.0 6.4E-33 1.4E-37 271.7 27.2 238 12-363 127-382 (387)
12 COG1577 ERG12 Mevalonate kinas 100.0 1.5E-32 3.2E-37 259.8 21.3 215 11-335 80-295 (307)
13 PTZ00298 mevalonate kinase; Pr 100.0 7.8E-31 1.7E-35 253.8 28.7 219 13-337 93-315 (328)
14 COG2605 Predicted kinase relat 100.0 4.5E-31 9.8E-36 241.2 23.7 211 15-331 90-313 (333)
15 TIGR00549 mevalon_kin mevalona 100.0 2.4E-30 5.2E-35 244.1 24.5 196 13-315 77-273 (273)
16 TIGR01220 Pmev_kin_Gr_pos phos 100.0 2.5E-29 5.4E-34 245.7 25.7 214 11-329 97-343 (358)
17 PRK03926 mevalonate kinase; Pr 100.0 9.6E-29 2.1E-33 236.6 27.0 226 12-364 73-300 (302)
18 KOG1511 Mevalonate kinase MVK/ 100.0 3E-29 6.5E-34 234.1 22.3 243 8-364 121-381 (397)
19 PRK13412 fkp bifunctional fuco 100.0 1.1E-28 2.5E-33 261.2 26.8 213 13-331 725-951 (974)
20 PLN02451 homoserine kinase 99.9 2.9E-24 6.4E-29 210.3 24.8 225 13-364 133-366 (370)
21 COG0083 ThrB Homoserine kinase 99.9 8E-23 1.7E-27 191.9 25.0 219 14-364 77-298 (299)
22 PRK01212 homoserine kinase; Pr 99.9 7.1E-23 1.5E-27 196.0 24.7 219 13-363 80-301 (301)
23 TIGR00191 thrB homoserine kina 99.9 1.4E-21 3E-26 187.3 23.2 216 13-362 79-301 (302)
24 PTZ00299 homoserine kinase; Pr 99.9 7.1E-21 1.5E-25 183.7 21.6 223 13-364 81-323 (336)
25 TIGR01920 Shik_kin_archae shik 99.9 1.2E-20 2.6E-25 176.9 22.3 99 13-115 63-164 (261)
26 PRK03188 4-diphosphocytidyl-2- 99.9 1.8E-20 3.9E-25 179.4 21.8 212 13-364 82-296 (300)
27 TIGR01219 Pmev_kin_ERG8 phosph 99.9 5.7E-20 1.2E-24 182.8 25.7 243 12-334 111-431 (454)
28 PRK02534 4-diphosphocytidyl-2- 99.9 1.1E-20 2.4E-25 181.8 18.1 223 13-363 85-311 (312)
29 PRK01123 shikimate kinase; Pro 99.9 6.5E-20 1.4E-24 174.0 22.7 99 13-116 74-175 (282)
30 PRK00128 ipk 4-diphosphocytidy 99.9 7.9E-21 1.7E-25 180.7 16.3 188 13-331 83-272 (286)
31 TIGR00144 beta_RFAP_syn beta-R 99.8 6E-19 1.3E-23 170.2 23.5 222 13-363 81-324 (324)
32 TIGR00154 ispE 4-diphosphocyti 99.8 2.4E-18 5.2E-23 164.1 18.8 94 12-117 84-177 (293)
33 COG1907 Predicted archaeal sug 99.8 7.2E-18 1.6E-22 154.9 20.7 227 12-363 69-311 (312)
34 PRK14614 4-diphosphocytidyl-2- 99.8 4.2E-18 9.1E-23 161.4 14.4 94 13-118 84-177 (280)
35 PRK14616 4-diphosphocytidyl-2- 99.8 1.2E-17 2.6E-22 158.9 16.4 193 13-335 82-277 (287)
36 PRK14608 4-diphosphocytidyl-2- 99.8 2.5E-17 5.5E-22 156.8 16.4 93 13-117 89-181 (290)
37 PRK14615 4-diphosphocytidyl-2- 99.7 7.6E-17 1.6E-21 153.9 16.5 93 13-117 87-180 (296)
38 PRK14612 4-diphosphocytidyl-2- 99.7 3.2E-17 7E-22 155.1 13.4 89 13-117 82-170 (276)
39 PRK14611 4-diphosphocytidyl-2- 99.7 1.6E-16 3.4E-21 150.3 17.9 93 13-117 79-171 (275)
40 PRK14613 4-diphosphocytidyl-2- 99.7 1.9E-16 4E-21 151.3 18.0 198 13-336 92-291 (297)
41 PRK14609 4-diphosphocytidyl-2- 99.7 9.6E-17 2.1E-21 151.2 13.9 93 13-117 81-174 (269)
42 PRK00343 ipk 4-diphosphocytidy 99.6 5.5E-14 1.2E-18 132.6 14.6 92 13-117 86-177 (271)
43 PRK00650 4-diphosphocytidyl-2- 99.5 1.3E-13 2.9E-18 130.2 16.0 92 13-116 79-170 (288)
44 PF00288 GHMP_kinases_N: GHMP 99.5 2.1E-14 4.5E-19 106.7 8.2 67 16-83 1-67 (67)
45 TIGR01240 mevDPdecarb diphosph 99.5 3E-12 6.5E-17 122.5 23.2 204 13-332 84-304 (305)
46 COG1947 IspE 4-diphosphocytidy 99.5 2.6E-13 5.7E-18 127.1 13.5 93 13-117 84-176 (289)
47 COG1685 Archaeal shikimate kin 99.5 5.7E-12 1.2E-16 115.2 20.6 99 13-115 69-170 (278)
48 PF08544 GHMP_kinases_C: GHMP 99.5 8.9E-14 1.9E-18 107.7 7.4 82 243-333 1-84 (85)
49 PRK14610 4-diphosphocytidyl-2- 99.5 6.7E-13 1.4E-17 126.0 14.7 89 13-115 83-173 (283)
50 PRK05905 hypothetical protein; 99.3 3.9E-11 8.5E-16 111.9 13.1 90 13-116 85-175 (258)
51 KOG4644 L-fucose kinase [Carbo 99.3 2.5E-10 5.4E-15 112.0 18.3 211 13-328 690-918 (948)
52 KOG1537 Homoserine kinase [Ami 99.1 9.4E-10 2E-14 100.1 10.7 225 15-362 95-352 (355)
53 COG4542 PduX Protein involved 99.0 9.2E-09 2E-13 93.4 16.0 181 13-319 82-264 (293)
54 PRK04181 4-diphosphocytidyl-2- 99.0 1.5E-09 3.3E-14 101.5 9.2 92 13-117 85-177 (257)
55 PLN02407 diphosphomevalonate d 99.0 1.7E-07 3.7E-12 90.1 22.2 60 16-84 105-167 (343)
56 COG3890 ERG8 Phosphomevalonate 98.9 4.9E-07 1.1E-11 83.2 20.6 86 26-115 107-202 (337)
57 COG3407 MVD1 Mevalonate pyroph 98.7 2.6E-06 5.7E-11 81.4 21.8 63 13-84 89-151 (329)
58 KOG2833 Mevalonate pyrophospha 98.6 1.1E-05 2.5E-10 75.6 22.2 62 14-84 105-166 (395)
59 COG1829 Predicted archaeal kin 98.6 3.5E-06 7.6E-11 77.9 18.4 94 14-114 74-170 (283)
60 KOG4519 Phosphomevalonate kina 98.4 6.3E-06 1.4E-10 77.7 13.9 67 26-95 152-232 (459)
61 PF03460 NIR_SIR_ferr: Nitrite 64.9 15 0.00031 26.6 4.5 49 280-330 20-68 (69)
62 COG2221 DsrA Dissimilatory sul 42.6 35 0.00075 32.9 4.2 47 281-329 42-88 (317)
63 COG0024 Map Methionine aminope 29.6 1.5E+02 0.0032 27.9 6.0 54 261-314 14-70 (255)
64 COG1356 tfx Transcriptional re 27.9 2.4E+02 0.0051 23.6 6.2 47 187-249 20-66 (143)
65 PRK04181 4-diphosphocytidyl-2- 23.3 59 0.0013 30.4 2.3 27 282-317 229-255 (257)
66 TIGR01743 purR_Bsub pur operon 21.1 3.9E+02 0.0086 25.2 7.3 68 261-336 24-93 (268)
No 1
>PLN02521 galactokinase
Probab=100.00 E-value=1e-60 Score=480.96 Aligned_cols=349 Identities=74% Similarity=1.118 Sum_probs=306.5
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
.||++.|.|+||+++|||||||+++|++.+++.+++.++++++++++|+++|+++|.++|+|||+++++|+.|+++++||
T Consensus 148 ~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~~d~ 227 (497)
T PLN02521 148 VGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDF 227 (497)
T ss_pred CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEEEec
Confidence 49999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcC
Q 017802 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (365)
Q Consensus 93 ~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~~~ 172 (365)
+++.++++|+|.++.|++++|++++.|+.++++.||.|++||+.|+++|+++.+++++....++++|||+.+++-.+.+.
T Consensus 228 ~~l~~~~v~~p~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~ 307 (497)
T PLN02521 228 NPVRATDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEEAISKVKTLSDVEGLCVSFAGS 307 (497)
T ss_pred CCCceEEeecCCCcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHhhcCCcchhcccccCCHHHHHHHHhhhccc
Confidence 99999999999899999999999999999999999999999999999999988876432122367899997654334455
Q ss_pred CCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhcccc
Q 017802 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLR 252 (365)
Q Consensus 173 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~ 252 (365)
....++.+.+++.+.+.+|++++++++++..+++++++.++..+.+...+.+.+++|+.|+++|+.||.+++++|++++
T Consensus 308 ~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~~~~al~~~~- 386 (497)
T PLN02521 308 HGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSL- 386 (497)
T ss_pred ccchhhHHHhhhhhccccCCHHHHHHHhCCcHHHHhhccccccccccccchhHHhhhhhheecHHHHHHHHHHHHHhcC-
Confidence 5556678888999999999999999887755666665555555555556678899999999999999999999999864
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCCcHHHHHHHHHHHH
Q 017802 253 LLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQF 332 (365)
Q Consensus 253 ~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~~~~~~~~~l~~~y 332 (365)
..+.++..||++|++||.++|++|++|||++|.|++++++.|++||||||||||||+++|++++..+++++.+.+.|
T Consensus 387 ---~~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~~Ga~GaRltGaG~GG~~i~lv~~~~~~~~~~~l~~~y 463 (497)
T PLN02521 387 ---SEEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKF 463 (497)
T ss_pred ---ccchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCCcEEEECCCCCCeEEEEEECHHHHHHHHHHHHHHH
Confidence 22345999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HhcccCCCcccCCCCcceEEEeeCCCceeeccC
Q 017802 333 YQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF 365 (365)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~~ 365 (365)
+++.+.++.+++.++.+.+|+++|++||++++|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~~~~~ 496 (497)
T PLN02521 464 YKSRIEKGVIKEEDLGLYVFASKPSSGAAILKF 496 (497)
T ss_pred HhhccccccccccCCCCcEEEEecCCCceEeec
Confidence 987653445666678899999999999999875
No 2
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.7e-59 Score=442.66 Aligned_cols=284 Identities=33% Similarity=0.488 Sum_probs=254.4
Q ss_pred CchhHHHhh---cCCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHH
Q 017802 2 KGETVVIIT---KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQA 77 (365)
Q Consensus 2 ~~~~~~~~~---~~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~ 77 (365)
||+++.+.. .++|+++.|.|+||.|+|||||||+.||++.++.+++++++++.+++++|+++|+ |+|.+||+|||+
T Consensus 100 kgvi~~l~~~g~~~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AEn~fvGvn~G~mDQ~ 179 (390)
T COG0153 100 KGVIKALQKRGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNCGIMDQL 179 (390)
T ss_pred HHHHHHHHhcCCCcCCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccCCcCchHHHH
Confidence 677777777 6689999999999999999999999999999999999999999999999999996 999999999999
Q ss_pred HHHhhcCCeEEEeecCCCceEeeecCCC-cEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhcc
Q 017802 78 ISIMAKSGFAELIDFNPIRTTDVQLPAG-GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKV 156 (365)
Q Consensus 78 ~~~~Gg~~~~~~i~~~~~~~~~~~~p~~-~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~ 156 (365)
++.+|+.++++++||++++++++|+|.+ +.|+|+||++ |+.++.++||.|+.||+.|++.|++..
T Consensus 180 ~s~~G~~~~al~ld~~~l~~~~~~~p~~~~~ivI~ns~v---kr~la~seYn~Rr~ece~A~~~l~~~~----------- 245 (390)
T COG0153 180 ASAFGKKDHALLLDCRTLEYEPVPFPVGGVSIVIVNSNV---KRELADSEYNERRAECEEAAEFLGVSI----------- 245 (390)
T ss_pred HHHhCCCCcEEEEEcccCceEEeccCccceEEEEecCCC---ccccchhHHHHHHHHHHHHHHHHHHhh-----------
Confidence 9999999999999999999999999986 9999999999 688999999999999999999998831
Q ss_pred ccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHH
Q 017802 157 KTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE 236 (365)
Q Consensus 157 ~~L~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E 236 (365)
+.|+|+.+. ++.++.. . ++ . ...+++|+.|+++|
T Consensus 246 ~~L~d~~~~-----------------------------~~~~~~~-----~----i~-------~-~~~~~rRa~hvv~E 279 (390)
T COG0153 246 KSLRDVTDE-----------------------------EFAALQA-----E----IE-------V-DPKIARRARHVVTE 279 (390)
T ss_pred hhhhhcCHH-----------------------------HHHhhhh-----h----cc-------c-chHHHHHHHHHHhH
Confidence 367766532 1111100 0 00 0 12478999999999
Q ss_pred hhhHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHh-CCCcEEEEccccCcceEEEE
Q 017802 237 AKRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVAL 315 (365)
Q Consensus 237 ~~rv~~~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~-~Ga~GakisGaG~GG~vi~L 315 (365)
++|++++++||+++| +.+||+||++||.+||++|++||||||+|++.+.. .|++|+||||||||||+|+|
T Consensus 280 n~Rvl~a~~Al~~~d---------l~~fG~Lm~~SH~slrddyevt~pElD~lve~a~~~~G~~GaRmTGaGfGGc~IaL 350 (390)
T COG0153 280 NQRVLEAAKALRSGD---------LTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGAYGARMTGAGFGGCVIAL 350 (390)
T ss_pred HHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHcCCcccceecCCCCCceEEEE
Confidence 999999999999998 99999999999999999999999999999999986 47899999999999999999
Q ss_pred EcCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeec
Q 017802 316 VKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 363 (365)
Q Consensus 316 ~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 363 (365)
++.+.++++.+.+.+.|++..+ +++.+|+++|+.|++++
T Consensus 351 v~~~~v~~~~e~v~~~y~~~~g---------~k~~~yv~~~~~G~~~~ 389 (390)
T COG0153 351 VPNDDVEAVAEAVAEEYEKVTG---------LKAAFYVVEASQGAGVC 389 (390)
T ss_pred echhhHHHHHHHHHHhHHhhcC---------ccccEEEEeccCCcccc
Confidence 9999999999999999998875 67889999999999975
No 3
>PLN02865 galactokinase
Probab=100.00 E-value=4.6e-53 Score=416.98 Aligned_cols=295 Identities=26% Similarity=0.316 Sum_probs=250.1
Q ss_pred CchhHHHhhc---C-CceEEEEEecC-CCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchh
Q 017802 2 KGETVVIITK---F-QLFNHINSLFF-NLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMD 75 (365)
Q Consensus 2 ~~~~~~~~~~---~-~g~~i~i~s~i-P~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D 75 (365)
+|++.++.+. . +||++.|.+++ |.++|||||||+++|++.+++.+++..+++++++++|+++|+ ++|.+||+||
T Consensus 114 ~gv~~~l~~~g~~~~~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~~~~~~~la~~a~~~E~~~~G~~~G~mD 193 (423)
T PLN02865 114 RGAVYALQSRGHALSQGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRLIENEYLGLRNGILD 193 (423)
T ss_pred HHHHHHHHHcCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcccc
Confidence 5677777653 3 69999999999 579999999999999999999999999999999999999997 8999999999
Q ss_pred HHHHHhhcCCeEEEeecCCCceEeeecC-------CCcEEEEEecCCcchhhhhc-ccchhhHHHHHHHHHHHHHHHhCC
Q 017802 76 QAISIMAKSGFAELIDFNPIRTTDVQLP-------AGGTFVVAHSLAESLKAITA-ASNYNNRVVECRLTAIVLAIKLGM 147 (365)
Q Consensus 76 ~~~~~~Gg~~~~~~i~~~~~~~~~~~~p-------~~~~~vli~s~~~~~k~~~~-~~~y~~r~~e~~~a~~~l~~~~~~ 147 (365)
|+++++|..++++++||+++.++.+|+| .++.|++++|++ +|... ++.||.|+.||+.|+++|++++++
T Consensus 194 Q~as~~~~~g~~~~iDf~~l~~~~vpl~~~~~~~~~~~~ivv~~s~~---~h~l~~~~~Yn~Rr~Ec~~aa~~l~~~~~~ 270 (423)
T PLN02865 194 QSAILLSRYGCLTFMDCKTLDHKLVSLQFQQPGGEKPFKILLAFSGL---RHALTNKPGYNLRVSECQEAARFLLEASGN 270 (423)
T ss_pred HHHHHhcccCceEEEEccCCCcceeecCcccccCCCCeEEEEEeCCC---chhhcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999877777766 368899999998 46655 789999999999999999987764
Q ss_pred CchhhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHH
Q 017802 148 KPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLH 227 (365)
Q Consensus 148 ~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (365)
... .++||++.. +++..... .+ ...++
T Consensus 271 ~~~-----~~~Lr~~~~-----------------------------~~~~~~~~-~l------------------~~~l~ 297 (423)
T PLN02865 271 DEL-----EPLLCNVEP-----------------------------EVYEAHKC-KL------------------EAVLA 297 (423)
T ss_pred ccc-----hhhhhcCCH-----------------------------HHHHHHHh-hc------------------CHHHH
Confidence 211 235665432 11111100 00 11368
Q ss_pred HHHhHHHHHhhhHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHh-CCCcEEEEccc
Q 017802 228 QRAAHVYSEAKRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGA 306 (365)
Q Consensus 228 ~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~-~Ga~GakisGa 306 (365)
+|+.|+++|+.||.+++.+|+++| ++.||+||++||.++|++|++|||++|.|++.+++ .|++|+|||||
T Consensus 298 ~Ra~Hv~~E~~Rv~~~~~al~~~d---------~~~~g~lm~~sh~Slrd~yevS~~eld~lv~~a~~~~Ga~GaR~tGg 368 (423)
T PLN02865 298 RRAEHYFSENMRVIKGVEAWASGN---------LEEFGKLISASGLSSIENYECGCEPLIQLYEILLKAPGVYGARFSGA 368 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC---------HHHHHHHHHHhhhhHHhhccCCcHHHHHHHHHHHhcCCCeEEEEecc
Confidence 999999999999999999999998 99999999999999999999999999999999998 59999999999
Q ss_pred cCcceEEEEEcCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeec
Q 017802 307 GWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 363 (365)
Q Consensus 307 G~GG~vi~L~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 363 (365)
|||||+++|++.+.++++++++++.|+++.. +..+.-+.++.+|+++|++|++++
T Consensus 369 GfGGc~vaLv~~~~~~~~~~~v~~~Y~~~~p--~~~~~~~~~~~~~~~~p~~Ga~~~ 423 (423)
T PLN02865 369 GFRGCCVAFVDAEMAEEAASFVRDEYEKAQP--ELASNINGDKPVLICEAGDCARVL 423 (423)
T ss_pred CCccEEEEEEchhHHHHHHHHHHHHHHhhcc--ccccccCCCCcEEEEecCCCcccC
Confidence 9999999999999999999999999997642 122122467899999999999874
No 4
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=3.4e-53 Score=421.78 Aligned_cols=299 Identities=21% Similarity=0.289 Sum_probs=236.5
Q ss_pred CCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCC--------------------CCCHHHHHHHHHHhhh-hhCCC
Q 017802 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV--------------------EVPKKEIAQLTCECEQ-FIGTQ 70 (365)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~--------------------~l~~~el~~la~~~E~-~~g~~ 70 (365)
++||++.|.++||.|+|||||||++||++.|++.+++. +.+..+++.+|+++|+ ++|.+
T Consensus 132 ~~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~aqraEn~~vGv~ 211 (468)
T PTZ00290 132 LQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQARRIETEFCGVN 211 (468)
T ss_pred CCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccccccccccCcccHHHHHHHHHHHHHhhcCCC
Confidence 36999999999999999999999999999999998632 1234889999999998 99999
Q ss_pred CCchhHHHHHhhcCCeEEEeecCCCceEeeecC----CCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhC
Q 017802 71 SGGMDQAISIMAKSGFAELIDFNPIRTTDVQLP----AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLG 146 (365)
Q Consensus 71 ~G~~D~~~~~~Gg~~~~~~i~~~~~~~~~~~~p----~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~ 146 (365)
||+|||+++++|+.++++++||++++++++|++ .++.|+|+||+++++...+++.+||.|+.||+.|++.|++..
T Consensus 212 cGiMDQ~asa~g~~~~al~iD~~~l~~~~v~l~~~~~~~~~~vV~nS~v~h~l~~s~~~~Yn~Rr~ece~a~~~L~~~~- 290 (468)
T PTZ00290 212 VGIMDQFISAFAEEDKFMFLDCKSLTFESHDMTPLLGDGACFLLIDSMIKHDLLGGTAGMYNTVRSDQEGAQKKIGKHR- 290 (468)
T ss_pred cchhhHHHHHhCCCCcEEEEecCCCeEEEeccCCCCCCCcEEEEEeCCCcchhccccchhhHHHHHHHHHHHHHhcccc-
Confidence 999999999999999999999999999999875 379999999999654443345599999999999999996542
Q ss_pred CCchhhhhccc-cchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHH-HHHHHhhhhhhhhhcCCCchhHHhhhhhH
Q 017802 147 MKPQEAISKVK-TLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALD-IEKITEEKLTSIFANSSSSLDVLNAAKQY 224 (365)
Q Consensus 147 ~~~~~~~~~~~-~L~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (365)
+ ...+ +|||+.. ...+|+.++ +..+ ...+.+.++ +
T Consensus 291 l------~~~~~~Lrd~~~----------------------~~~~~~~~~~~~~~--------~~~~~~~l~-------~ 327 (468)
T PTZ00290 291 Y------RGKPFTFSDLVR----------------------NPKKYTFDGDVVAF--------MESCKPLMT-------P 327 (468)
T ss_pred c------cchhhhHHHhhh----------------------ccccccccccHHHH--------HHHhhhcCC-------H
Confidence 0 0001 3343310 112233321 1111 000111111 2
Q ss_pred HHHHHHhHHHHHhhhHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHH-hCCCcEEEE
Q 017802 225 KLHQRAAHVYSEAKRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARL 303 (365)
Q Consensus 225 ~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~-~~Ga~Gaki 303 (365)
.+++|+.|+++|+.||.+++.+|+..+.+ ..+.+++.||+||++||.+|+++|++|||+||.|++.+. ..|++||||
T Consensus 328 ~~~~Ra~HVitEn~RV~~a~~al~~~~~l--~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~~~~~G~~GaRl 405 (468)
T PTZ00290 328 GEFERGTYNIMEQIRTLEFIKLNDPELPL--SREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEEKGVAGGRM 405 (468)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhc--ccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCcEEEE
Confidence 47899999999999999999999632100 012349999999999999999999999999999999765 569999999
Q ss_pred ccccCcceEEEEEcCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeeccC
Q 017802 304 TGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF 365 (365)
Q Consensus 304 sGaG~GG~vi~L~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~~ 365 (365)
||||||||+++|++++..+++++++++.|.++++ ..+.+|+++|++||+++.+
T Consensus 406 TGaG~GGc~i~Lv~~~~~~~~~~~v~~~y~~~~g---------~~~~~~~~~~~~Ga~~~~~ 458 (468)
T PTZ00290 406 MGGGFGGCIILLLKKNAVDRVVAHVREKFKARFG---------VENDVYPVVAGDGAFVVSL 458 (468)
T ss_pred ecCCCceEEEEEechhhHHHHHHHHHHHHHHhhC---------CCCcEEEEecCCCcEEEee
Confidence 9999999999999999999999999999987764 4678999999999998753
No 5
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=9.2e-50 Score=393.17 Aligned_cols=284 Identities=30% Similarity=0.399 Sum_probs=246.3
Q ss_pred chhHHHhhc---C-CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHH
Q 017802 3 GETVVIITK---F-QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQA 77 (365)
Q Consensus 3 ~~~~~~~~~---~-~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~ 77 (365)
|++..+... . +||++.|.|+||+++|||||||++||++.|++++++.++++++++++|+++|+ ++|.|||+|||+
T Consensus 97 gvi~~l~~~~~~~~~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~sG~mDq~ 176 (387)
T PRK05322 97 GVLKFLQEAGYKIDHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEFIGVNSGIMDQF 176 (387)
T ss_pred HHHHHHHHcCCCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhccCCCCcchHHHH
Confidence 445555432 2 79999999999999999999999999999999999999999999999999998 889999999999
Q ss_pred HHHhhcCCeEEEeecCCCceEeeecCC-CcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhcc
Q 017802 78 ISIMAKSGFAELIDFNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKV 156 (365)
Q Consensus 78 ~~~~Gg~~~~~~i~~~~~~~~~~~~p~-~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~ 156 (365)
++++||.++++++|+++++++.+|+|. ++.|++++|+. +|.+.++.||.|+.||+.+++.+++++++
T Consensus 177 as~~G~~~~~~~~d~~~~~~~~~~~~~~~~~lvv~dsg~---~~~~~~~~yn~r~~e~~~a~~~l~~~~~~--------- 244 (387)
T PRK05322 177 AIGMGKKDHAILLDCNTLEYEYVPLDLGDYVIVIMNTNK---RRELADSKYNERRAECEKALEELQKKLDI--------- 244 (387)
T ss_pred HHHhccCCeEEEEecCCCceEEeccCCCCeEEEEEECCC---ccccCcchhhHHHHHHHHHHHHHhhhcCc---------
Confidence 999999999999999988888888864 67899999998 67888899999999999999999887543
Q ss_pred ccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHH
Q 017802 157 KTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE 236 (365)
Q Consensus 157 ~~L~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E 236 (365)
++||++.. +++..+.. . . ..+.+++|+.|++.|
T Consensus 245 ~~l~~~~~-----------------------------~~~~~~~~-----~---~----------~~~~~~~r~~h~v~e 277 (387)
T PRK05322 245 KSLGELTE-----------------------------EEFDEYSY-----L---I----------KDETLLKRARHAVTE 277 (387)
T ss_pred cchhcCCH-----------------------------HHHHHHHh-----h---c----------CCHHHHHHHHHHHHH
Confidence 24555432 11111100 0 0 012467999999999
Q ss_pred hhhHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHH-hCCCcEEEEccccCcceEEEE
Q 017802 237 AKRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTGAGWGGCVVAL 315 (365)
Q Consensus 237 ~~rv~~~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~-~~Ga~GakisGaG~GG~vi~L 315 (365)
+.|+..++.+|+++| ++.||++|+++|.+|++.|++|+|++|.|++.++ ..|++|+||||||+|||+++|
T Consensus 278 ~~r~~~~~~al~~~d---------~~~lg~lm~~sh~~L~~~y~~s~~eld~lv~~a~~~~Ga~garlsGaG~GG~vial 348 (387)
T PRK05322 278 NQRTLKAVKALKAGD---------LEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQEGVLGARMTGAGFGGCAIAI 348 (387)
T ss_pred HHHHHHHHHHHHhCC---------HHHHHHHHHHhhHHHHhhhcCCCHhHHHHHHHHHhcCCccEEEEecCCCceEEEEE
Confidence 999999999999998 9999999999999999999999999999999997 579999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeec
Q 017802 316 VKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 363 (365)
Q Consensus 316 ~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 363 (365)
++.+..+++.+.|++.|+++++ ..+.+|+++|++|++++
T Consensus 349 ~~~~~~~~~~~~l~~~y~~~~~---------~~~~~~~~~~~~Ga~~~ 387 (387)
T PRK05322 349 VKKDKVEAFKENVGKAYEEKIG---------YAASFYVAEIGDGAREL 387 (387)
T ss_pred EcHHHHHHHHHHHHHHHHHhcC---------CCCcEEEEecCCCcccC
Confidence 9988999999999999998764 47789999999999974
No 6
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=7.9e-50 Score=393.21 Aligned_cols=278 Identities=29% Similarity=0.432 Sum_probs=240.4
Q ss_pred chhHHHhhc---CCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHH
Q 017802 3 GETVVIITK---FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAI 78 (365)
Q Consensus 3 ~~~~~~~~~---~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~ 78 (365)
|++..+... .+||++.|.|+||+++|||||||+++|++.|++.+++.++++++++++|+++|+ ++|.|||.|||++
T Consensus 98 ~~~~~l~~~~~~~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~~Dq~~ 177 (382)
T PRK05101 98 GVVKHLQERNPDFGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVGCNCGIMDQLI 177 (382)
T ss_pred HHHHHHHHhCCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 344444432 369999999999999999999999999999999999999999999999999998 8899999999999
Q ss_pred HHhhcCCeEEEeecCCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhcccc
Q 017802 79 SIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKT 158 (365)
Q Consensus 79 ~~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~ 158 (365)
+++||.++++++++++.++.++++|.++.|++++|+++ +....+.||.|+.||+.|++++... .
T Consensus 178 s~~G~~~~~~~~d~~~~~~~~~~~~~~~~~vv~~sg~~---~~l~~~~y~~r~~e~~~A~~~l~~~-------------~ 241 (382)
T PRK05101 178 SALGKKDHALLIDCRSLETKAVPMPEGVAVVIINSNVK---RGLVDSEYNTRRQQCETAARFFGVK-------------A 241 (382)
T ss_pred HHcCCCCeEEEEEcCCCceEEeeCCCCcEEEEEeCCCC---ccccccchhHHHHHHHHHHHHhChH-------------h
Confidence 99999999999999998889999998999999999984 5566789999999999999877443 3
Q ss_pred chhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhh
Q 017802 159 LSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAK 238 (365)
Q Consensus 159 L~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~ 238 (365)
|+++.. +++.... ..+ ...+++|+.|++.|+.
T Consensus 242 l~~~~~-----------------------------~~~~~~~----~~l---------------~~~~~~r~~h~i~E~~ 273 (382)
T PRK05101 242 LRDVTL-----------------------------EQFNAVA----AEL---------------DPVVAKRARHVITENA 273 (382)
T ss_pred hhcCCH-----------------------------HHHHHHH----hhC---------------CHHHHHHHHHHhHHHH
Confidence 443321 1111110 000 1136789999999999
Q ss_pred hHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhC-CC-cEEEEccccCcceEEEEE
Q 017802 239 RVHAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNN-GA-LGARLTGAGWGGCVVALV 316 (365)
Q Consensus 239 rv~~~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~-Ga-~GakisGaG~GG~vi~L~ 316 (365)
||.+++++|+++| ++.||+||+++|.++|+.|++|||++|.|++.+++. |+ +||||||||||||+++|+
T Consensus 274 rv~~a~~al~~~d---------~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a~~~~Ga~gGakltGaG~GG~~ial~ 344 (382)
T PRK05101 274 RTLEAASALAAGD---------LKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDQGGVRMTGGGFGGCIVALV 344 (382)
T ss_pred HHHHHHHHHHcCC---------HHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHHHhccCCcceEEeccCCCccEEEEEE
Confidence 9999999999998 999999999999999988999999999999999996 97 478999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceee
Q 017802 317 KESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 362 (365)
Q Consensus 317 ~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 362 (365)
+++.++++++++.+.|++++. +.+.+|+++|++|+++
T Consensus 345 ~~~~~~~~~~~~~~~y~~~~~---------~~~~~~~~~~~~Ga~~ 381 (382)
T PRK05101 345 PEELVEAVRQAVAEQYEAKTG---------LKETFYVCKASQGAGQ 381 (382)
T ss_pred cHHHHHHHHHHHHHHHHHhhC---------CCCeEEEEecCCCccc
Confidence 999999999999999998774 5778999999999986
No 7
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=1e-48 Score=382.65 Aligned_cols=279 Identities=25% Similarity=0.353 Sum_probs=240.5
Q ss_pred chhHHHhh---cCCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHH
Q 017802 3 GETVVIIT---KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAI 78 (365)
Q Consensus 3 ~~~~~~~~---~~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~ 78 (365)
|++..|.. ++.|+++.|.|+||+++|||||||+++|++.|++.+++.++++++++++|+++|+ ++|.|||.|||++
T Consensus 77 gv~~~l~~~g~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~la~~a~~aE~~~~G~~~G~~Dq~a 156 (363)
T PRK00555 77 GVIWALRGAGHPVPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQLA 156 (363)
T ss_pred HHHHHHHHcCCCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCChhHHHH
Confidence 45555554 2469999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred HHhhcCCeEEEeecCCCceEeeecCCC---cEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhc
Q 017802 79 SIMAKSGFAELIDFNPIRTTDVQLPAG---GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISK 155 (365)
Q Consensus 79 ~~~Gg~~~~~~i~~~~~~~~~~~~p~~---~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~ 155 (365)
+++||.|++++++|++..+.++|+|++ +.|++++|+. ++.+.+..||.|+.||+.+++.+..
T Consensus 157 s~~G~~~~~~~~d~~~~~~~~v~~~~~~~~~~lvv~~s~~---~~~~~~~~y~~rr~~~~~~~~~~~~------------ 221 (363)
T PRK00555 157 ALFGAPKTALLIDFRDLTVRPVAFDPDAAGVVLLLMDSRA---RHRHAGGEYAARRASCERAAADLGV------------ 221 (363)
T ss_pred HHhCCCCeEEEEEcCCCcEEEeccCCCcCceEEEEEcCCC---cccccchhhHHHHHHHHHHHHHhCc------------
Confidence 999999989999998888888888753 5799999998 4677788999999999999877632
Q ss_pred cccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHH
Q 017802 156 VKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYS 235 (365)
Q Consensus 156 ~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 235 (365)
+.+|++... .+..+ .. ...+..++|+.|+++
T Consensus 222 -~~lr~~~~~-----------------------------~~~~~-----~~--------------~~~~~~~~r~~h~~~ 252 (363)
T PRK00555 222 -SSLRAVQDR-----------------------------GLAAL-----GA--------------IADPIDARRARHVLT 252 (363)
T ss_pred -cchhcCCHH-----------------------------HHHHH-----Hh--------------cCChHHHHHHHHHHH
Confidence 134443211 11100 00 001235789999999
Q ss_pred HhhhHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEE
Q 017802 236 EAKRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVAL 315 (365)
Q Consensus 236 E~~rv~~~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L 315 (365)
|+.|+.+++.+|.++| ++.||++|+++|+++|+.+++|+|++|.|++.+++.|++|+||||||||||+++|
T Consensus 253 e~~~v~~~~~al~~gd---------~~~lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a~~~Ga~GaklsGaG~Gg~vial 323 (363)
T PRK00555 253 ENQRVLDFAAALADSD---------FTAAGQLLTASHASMRDDFEITTERIDLIADSAVRAGALGARMTGGGFGGCVIAL 323 (363)
T ss_pred HHHHHHHHHHHHHcCC---------HHHHHHHHHHhhHHHHhhcCCCChhHHHHHHHHHhcCCeEEEECCCCccCeEEEE
Confidence 9999999999999999 9999999999999999889999999999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeec
Q 017802 316 VKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 363 (365)
Q Consensus 316 ~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 363 (365)
++.+..+++.+.+++.|+++++ ..+.+|+++|++|++++
T Consensus 324 ~~~~~~~~~~~~l~~~y~~~~~---------~~~~~~~~~~~~g~~~~ 362 (363)
T PRK00555 324 VPADRAEDVADTVRRAAVTAGY---------PEPAVSRTYAAPGAGEC 362 (363)
T ss_pred EchhHHHHHHHHHHHHHHHccC---------CCCcEEEEecCCCcccC
Confidence 9988899999999999998775 36789999999999986
No 8
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=2.4e-48 Score=383.97 Aligned_cols=274 Identities=33% Similarity=0.456 Sum_probs=235.4
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEee
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~i~ 91 (365)
.||++.|.++||+++|||||||++||++.|++.+++.++++++++++|+.+|+ ++|.++|+|||+++++||.+++++++
T Consensus 109 ~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~ 188 (386)
T TIGR00131 109 LGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVE 188 (386)
T ss_pred CceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCccCCCcchHHHHHHHhccCCcEEEEE
Confidence 49999999999999999999999999999999999999999999999999998 88999999999999999999999999
Q ss_pred cCCCceEeeecCC-CcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 017802 92 FNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (365)
Q Consensus 92 ~~~~~~~~~~~p~-~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~ 170 (365)
++++++.++++|. ++.|+|++|++ ++.+.+..||.|++||+.|++.++.+. .+.||++.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~lvv~~s~~---~~~t~~~~y~~r~~e~~~a~~~l~~~~----------~~~lr~~~~~~---- 251 (386)
T TIGR00131 189 CRSLKATPFKFPQLGIAFVIANTNV---KRTLAPSNYNTRRQECTTAANFLAATD----------KGALRDFMNEY---- 251 (386)
T ss_pred cCCCceeeecCCCCCeEEEEEeCCC---ccccccchhHHHHHHHHHHHHHhcccc----------ccchhhCCHHH----
Confidence 9998889999997 89999999999 466777899999999999999986541 12445433210
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhcc
Q 017802 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (365)
Q Consensus 171 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~ 250 (365)
+ ..+...++. +. ...++|+.|+++|+.||.+++++|+++
T Consensus 252 -----------~-----------~~~~~~~~~-~~------------------~~~~~r~~h~v~e~~rv~~~~~al~~~ 290 (386)
T TIGR00131 252 -----------F-----------ARYIARLTK-ML------------------PLVEERAKHVVSENLRVLKAVKAMKDN 290 (386)
T ss_pred -----------H-----------hhhHhhHhh-cC------------------HHHHhhHheeehHHHHHHHHHHHHHhC
Confidence 0 000000000 00 124678999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHH-HhCCCcEEEEccccCcceEEEEEcCCcHHHHHHHHH
Q 017802 251 LRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVC-RNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 329 (365)
Q Consensus 251 d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a-~~~Ga~GakisGaG~GG~vi~L~~~~~~~~~~~~l~ 329 (365)
| ++.||++|+++|.+++++|++|||++|.+++.+ ++.|++|+||||||||||+++|++++.++++.++++
T Consensus 291 d---------~~~lG~lm~~sh~~l~~~~~vs~peld~lv~~a~~~~GAlGakltGaG~GG~vial~~~~~~~~v~~~~~ 361 (386)
T TIGR00131 291 D---------FKQFGALMNESHASCDDDYECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQAVA 361 (386)
T ss_pred c---------HHHHHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHhcCCCcEEEEecCCCceEEEEEEcHHHHHHHHHHHH
Confidence 8 999999999999999998999999999999876 568999999999999999999999888999999999
Q ss_pred HHHHhcccCCCcccCCCCcceEEEeeCCCceee
Q 017802 330 EQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 362 (365)
Q Consensus 330 ~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 362 (365)
+.|++++. .++.+|++.++.|++.
T Consensus 362 ~~y~~~~~---------~~~~~~~~~~~~Ga~~ 385 (386)
T TIGR00131 362 DKYPKKTG---------LELTFYVIVSKPGAGS 385 (386)
T ss_pred HHHHHhhC---------CCCcEEEEEECCCcCC
Confidence 99976553 5788999999999875
No 9
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-44 Score=349.04 Aligned_cols=344 Identities=37% Similarity=0.552 Sum_probs=295.0
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHh-CCC--CCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEE
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAF-GVE--VPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAEL 89 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~-~~~--l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~ 89 (365)
-|+.+...+++|.|+||+||||+.++.+.|..++. |.+ ..+++++.++..+|+++|.++|+|||+++++|..+++++
T Consensus 141 vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~~~ae~~~G~~~gGmdq~asvl~~~~~Al~ 220 (489)
T KOG0631|consen 141 VGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATITVVAESYIGLNSGGMDQAASVLAEKGHALL 220 (489)
T ss_pred cceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcceEEeecccCcCCCcHHHHHHHHHhcCceEE
Confidence 38999999999999999999999998888888887 776 789999999999999999999999999999999999999
Q ss_pred ee--cCCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhh
Q 017802 90 ID--FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCV 167 (365)
Q Consensus 90 i~--~~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~ 167 (365)
++ +.|++...+++|..-.|++.++...++|..++.+.||.|+.|+.++...++.++++...+.+......+.-.+ .
T Consensus 221 v~~~~~Pf~~~~lk~~~~~vfvI~~~L~~~nk~~~a~tnynlRv~E~~ia~~~la~k~~~~~~~~~~~~~~~~~~~~--~ 298 (489)
T KOG0631|consen 221 VDPYFTPFRRSMLKLPDGGVFVIANSLVESNKAETAETNYNLRVVEGTIAAGELAAKILVELPAYILRYQLQRAWRG--D 298 (489)
T ss_pred ecccCCccccccccCCCCceEEEechhhhhcchhhhhhhhhceeEeeehhhHHHHHHhhcccHHHHHhhhhhhcccc--c
Confidence 99 5688888888886679999999999999999999999999999999999999988765532111111111000 0
Q ss_pred hhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHH
Q 017802 168 AFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV 247 (365)
Q Consensus 168 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al 247 (365)
-..|..+..+|+..|.+.+.+.||+.+|+...++.+..++.+.++...++ .....++++|++|+++|+.|+.++..++
T Consensus 299 i~~~~~~~~~~l~~v~~~~~~e~f~~ee~~~~l~~~~~~f~~~~~T~~~v--~~~~~k~~~rakHv~sea~rv~q~~~~~ 376 (489)
T KOG0631|consen 299 IGEGYERAEEMLGLVEESLKPEGFNIEEVARALGLDTEEFLQSLLTLAAV--DLQVKKLYQRAKHVYSEALRVLQEEKLC 376 (489)
T ss_pred cchhHHHHHHHHHHHHhhcCcCCCCHHHHHHHhccchHHHHHHhccccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01123355678889999999999999999999999888888877666654 4566788999999999999999999999
Q ss_pred hcccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCCcHHHHHHH
Q 017802 248 SSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILN 327 (365)
Q Consensus 248 ~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~~~~~~~~~ 327 (365)
.+.+. ..++.+..||+|||+||.+++.+|++|||++|+|+++++++|.+|+|+||||||||.+++++.+..+.+++.
T Consensus 377 ~~a~~---~~d~~~~~~g~LmneS~~Sc~~~yEcscpel~qL~kiala~g~~gaRlTGaGwGGc~v~lvp~d~~~~~~~~ 453 (489)
T KOG0631|consen 377 ARAPG---RADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALANGGVGARLTGAGWGGCTVALVPADLVDFAVAA 453 (489)
T ss_pred hcCcc---chhhhHHHHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHhcCCccceeeccccccceeeeccccchHHHHHh
Confidence 88651 112458899999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HHHHHHhcccCCCcccCCCCcceEEEeeCCCceeeccC
Q 017802 328 LKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF 365 (365)
Q Consensus 328 l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~~ 365 (365)
+++.||++.. |.+.++.....+++++|+.|++++++
T Consensus 454 ~~~~~Y~ka~--~~~~~~~~k~~~~~skp~~g~~l~el 489 (489)
T KOG0631|consen 454 LKEIYYEKAY--PKFAQDELKKALIVSKPAAGVLLLEL 489 (489)
T ss_pred hhhhhhcccc--chhhhchhhceEEEecCchhhhhccC
Confidence 9999998876 78888888889999999999998865
No 10
>PRK03817 galactokinase; Provisional
Probab=100.00 E-value=1.6e-42 Score=338.58 Aligned_cols=267 Identities=31% Similarity=0.411 Sum_probs=232.5
Q ss_pred CCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEe
Q 017802 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (365)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~i 90 (365)
.+||+++|.|+||.++|||||||+++|++.+++.+++.++++++++++|.++|+ ++|.++|++|++++++|+.+.++++
T Consensus 84 ~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~~g~~D~~~~~~g~~~~~~~~ 163 (351)
T PRK03817 84 VGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQFAVAFGKKDHAIFL 163 (351)
T ss_pred CCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccccCCCCcCchhhheeeccCCEEEEE
Confidence 469999999999999999999999999999999999999999999999999998 8899999999999999998888899
Q ss_pred ecCCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 017802 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (365)
Q Consensus 91 ~~~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~ 170 (365)
++.+..+.++++|.++.|++++|+.+ +.+....||.|+.+|+.+++.++.. +++++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~vv~~sg~~---~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~------- 220 (351)
T PRK03817 164 DTMTLEYEYVPFPEDYEILVFDTGVK---RELASSEYNERRQECEEALKILGKK-------------SSKEVT------- 220 (351)
T ss_pred ecCCCceEEEecCCCcEEEEEeCCCc---cccccchhHHHHHHHHHHHHHhCcc-------------chhcCC-------
Confidence 99887788899998999999999973 4555678999999999988877432 122211
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhcc
Q 017802 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (365)
Q Consensus 171 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~ 250 (365)
.++... ++ ..+++|+.|++.|+.|+.+++.+|.++
T Consensus 221 ----------------------~~~~~~-----l~------------------~~~~~~~~~~v~e~~r~~~~~~al~~~ 255 (351)
T PRK03817 221 ----------------------EEDLSK-----LP------------------PLLRKRAGYVLRENERVLKVRDALKEG 255 (351)
T ss_pred ----------------------HHHHHh-----CC------------------HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 011100 00 135688999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCCcHHHHHHHHHH
Q 017802 251 LRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 330 (365)
Q Consensus 251 d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~~~~~~~~~l~~ 330 (365)
| ++.||++|+++|.++++.|++++|++|.|++.+++.|++|+||||||||||+++|+++++.+++.+.+++
T Consensus 256 d---------~~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~~GalGaklsGaG~Gg~vlal~~~~~~~~~~~~l~~ 326 (351)
T PRK03817 256 D---------IETLGELLTESHWDLADNYEVSCEELDFFVEFALELGAYGARLTGAGFGGSAIALVDKGKFESIGEELLE 326 (351)
T ss_pred C---------HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHcCCCEEEEecCCCCeEEEEEEchHHHHHHHHHHHH
Confidence 9 9999999999999999989999999999999999999999999999999999999988889999999999
Q ss_pred HHHhcccCCCcccCCCCcceEEEeeCCCceeecc
Q 017802 331 QFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 364 (365)
Q Consensus 331 ~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 364 (365)
.|.+... ..+.+|++.|+.|+++++
T Consensus 327 ~~~~~~~---------~~~~~~~~~~~~G~~~~~ 351 (351)
T PRK03817 327 EYKKRFG---------IDPKYFVVESSDGVRKIE 351 (351)
T ss_pred HHHHhcC---------CCCcEEEEecCCCceeCC
Confidence 9876543 467899999999999874
No 11
>PLN02677 mevalonate kinase
Probab=100.00 E-value=6.4e-33 Score=271.67 Aligned_cols=238 Identities=22% Similarity=0.292 Sum_probs=175.8
Q ss_pred CCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhC-CCC-------------CHHHHHHHHHHhhh-hhCCCCCchhH
Q 017802 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFG-VEV-------------PKKEIAQLTCECEQ-FIGTQSGGMDQ 76 (365)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~-~~l-------------~~~el~~la~~~E~-~~g~~~G~~D~ 76 (365)
..+++++|.|+||+|+|||||||++||++.|+..+++ +++ +.+++.++|..+|+ ++|.|||+ |+
T Consensus 127 ~~~~~i~I~S~lP~GaGLGSSAAv~Va~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGi-D~ 205 (387)
T PLN02677 127 FNPATVVVTSELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGI-DN 205 (387)
T ss_pred CCCeEEEEEccCCCCCCccHHHHHHHHHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCch-hH
Confidence 4689999999999999999999999999999999998 222 23578899999998 78999985 99
Q ss_pred HHHHhhcCCeEEEeecCCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhcc
Q 017802 77 AISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKV 156 (365)
Q Consensus 77 ~~~~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~ 156 (365)
+++++|| .+.|+...+++++.|.+++|++++|+++++|...
T Consensus 206 a~s~~Gg-----~I~f~~~~~~~l~~~~~l~llv~dTgv~~sT~~l---------------------------------- 246 (387)
T PLN02677 206 TVSTYGN-----MIKFKSGELTRLQSNMPLKMLITNTRVGRNTKAL---------------------------------- 246 (387)
T ss_pred HHHhcCC-----eEEEcCCCceecCCCCCceEEEEECCCCCcHHHH----------------------------------
Confidence 9999999 5666665667777777899999999997654322
Q ss_pred ccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHH
Q 017802 157 KTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE 236 (365)
Q Consensus 157 ~~L~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E 236 (365)
|+.|++...+.| ++++ .+.+...++
T Consensus 247 ----------------------V~~V~~~~~~~p---------------~~~~---------------~il~~~~~i--- 271 (387)
T PLN02677 247 ----------------------VAGVSERALRHP---------------DAMK---------------SVFNAVDSI--- 271 (387)
T ss_pred ----------------------HHHHHHHHHhCH---------------HHHH---------------HHHHHHHHH---
Confidence 222222221110 0000 012223332
Q ss_pred hhhHHHHHHHHhc--ccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEE
Q 017802 237 AKRVHAFKDTVSS--NLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVA 314 (365)
Q Consensus 237 ~~rv~~~~~al~~--~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~ 314 (365)
+.++.++|.+ +|. ...+.+++.|+++|+.+|..|+.+ |+|+|.||.+++.+++.| +|||+||||+|||+|+
T Consensus 272 ---~~~a~~al~~~~~~~--~~~~~~~~~Lg~lm~~N~~LL~~L-GVS~~~le~iv~~a~~~~-~~AKlTGAGgGGC~Ia 344 (387)
T PLN02677 272 ---SEELATIIQSPAEDE--LSITEKEEKLKELMEMNQGLLQCM-GVSHSSIETVLRTTLKYK-LVSKLTGAGGGGCVLT 344 (387)
T ss_pred ---HHHHHHHHhcccccc--ccccchHHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHcC-CccccccCCCCCEEEE
Confidence 4455667776 220 011245999999999999999988 899999999999999985 7999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeec
Q 017802 315 LVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 363 (365)
Q Consensus 315 L~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 363 (365)
|++++..++.++.+.+++.+.+| .+|.+.++. |.+|.
T Consensus 345 L~~~~~~~~~~~~l~~~l~~~G~------------~~~~~~~g~~Gv~~~ 382 (387)
T PLN02677 345 LLPTLLSGTVVDKVIAELESSGF------------QCFTAGIGGNGVQIC 382 (387)
T ss_pred EcccccchhHHHHHHHHHHHCCC------------eEEEEEeCCCceEEE
Confidence 99764444444556666665555 578888875 88764
No 12
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=100.00 E-value=1.5e-32 Score=259.85 Aligned_cols=215 Identities=29% Similarity=0.401 Sum_probs=161.1
Q ss_pred cCCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEE
Q 017802 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAEL 89 (365)
Q Consensus 11 ~~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~ 89 (365)
..+||+++|.|+||+++|||||||+++|++.|++.++|.++++++++++++++|. .+|.+|| +|.+++++||. ++
T Consensus 80 ~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vqG~~Sg-~D~a~~~~gg~---v~ 155 (307)
T COG1577 80 SLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKASG-IDIATITYGGL---VA 155 (307)
T ss_pred CCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCCc-ccceEEEeCCE---EE
Confidence 3568999999999999999999999999999999999999999999999999998 6688876 99999999993 33
Q ss_pred eecCCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 017802 90 IDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (365)
Q Consensus 90 i~~~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~ 169 (365)
+... ..++++.++..-.|++.+++.+.+|..
T Consensus 156 ~~~~-~~~~~l~~~~~~~~~I~~tg~~~sT~e------------------------------------------------ 186 (307)
T COG1577 156 FKKG-FDFEKLEIELLGTLVIGDTGVPGSTKE------------------------------------------------ 186 (307)
T ss_pred EecC-CCccccccccCCeEEEEEcCCcCcHHH------------------------------------------------
Confidence 3321 345556655434789999998643321
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhc
Q 017802 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (365)
Q Consensus 170 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~ 249 (365)
+++.|++.+.+. ++.++ ..+++... -+.++..++.+
T Consensus 187 --------~V~~V~~l~~~~---------------~~~~~---------------~~~~~ig~------~~~~a~~al~~ 222 (307)
T COG1577 187 --------LVAGVAKLLEEE---------------PEVID---------------PILDAIGE------LVQEAEAALQT 222 (307)
T ss_pred --------HHHHHHHHHHhh---------------hHHHH---------------HHHHHHHH------HHHHHHHHHhc
Confidence 122222222111 00000 01111111 24556678888
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCCcHHHHHHHHH
Q 017802 250 NLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 329 (365)
Q Consensus 250 ~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~~~~~~~~~l~ 329 (365)
+| .+.||++|+.+|..|..+ ++|+|++|+|++.++++|+.|||+||||+|||+|+|++..+ ..+.+.
T Consensus 223 ~d---------~e~lgelm~~nq~LL~~L-gVs~~~L~~lv~~a~~~Ga~gaKlTGAGgGGc~IaL~~~~~---~~~~l~ 289 (307)
T COG1577 223 GD---------FEELGELMNINQGLLKAL-GVSTPELDELVEAARSLGALGAKLTGAGGGGCIIALAKNEE---IAETLS 289 (307)
T ss_pred cc---------HHHHHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHhcCccccccccCCCCceEEEEeccch---HHHHHH
Confidence 88 999999999999999999 89999999999999999999999999999999999998622 134444
Q ss_pred HHHHhc
Q 017802 330 EQFYQS 335 (365)
Q Consensus 330 ~~y~~~ 335 (365)
...++.
T Consensus 290 ~~~~~~ 295 (307)
T COG1577 290 NRLEKA 295 (307)
T ss_pred HHHHhc
Confidence 444443
No 13
>PTZ00298 mevalonate kinase; Provisional
Probab=100.00 E-value=7.8e-31 Score=253.80 Aligned_cols=219 Identities=22% Similarity=0.301 Sum_probs=171.4
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEee
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~i~ 91 (365)
+|++++|.++||+++|||||||+++|++.+++++++.+++.++++++|.++|+ ++|.++| +|++++++||. .+..
T Consensus 93 ~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~~~g~~sG-~D~~~~~~Gg~---~~~~ 168 (328)
T PTZ00298 93 DGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGYHGTPSG-ADNTAATYGGL---ISYR 168 (328)
T ss_pred CCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCh-HHHHHHHcCCe---EEEe
Confidence 49999999999999999999999999999999999999999999999999998 8899998 69999999993 3333
Q ss_pred c-CC-CceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 017802 92 F-NP-IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (365)
Q Consensus 92 ~-~~-~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~ 169 (365)
. .. ..+.++++|+++.+++++|+.+.++.. .|.. +++ +++
T Consensus 169 ~~~g~~~~~~l~~~~~~~lvv~~~~~~~sT~~----~~~~-----------v~~---------------~~~-------- 210 (328)
T PTZ00298 169 RVNGKSVFKRIAFQQPLYLVVCSTGITASTTK----VVGD-----------VRK---------------LKE-------- 210 (328)
T ss_pred cCCCccceeEecCCCCCeEEEEECCCchhHHH----HHHH-----------HHH---------------HHh--------
Confidence 2 22 246677777788999999998543211 1100 000 000
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhc
Q 017802 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (365)
Q Consensus 170 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~ 249 (365)
.. .+.+ + ...++..+ .+.++..+|.+
T Consensus 211 ------------------~~---p~~~--------~-------------------~~~~~~~~------~~~~~~~al~~ 236 (328)
T PTZ00298 211 ------------------NQ---PTWF--------N-------------------RLLENYNA------CVSEAKEALQK 236 (328)
T ss_pred ------------------cC---HHHH--------H-------------------HHHHHHHH------HHHHHHHHHHc
Confidence 00 0000 0 11233333 35567788988
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcC-CcHHHHHHHH
Q 017802 250 NLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNL 328 (365)
Q Consensus 250 ~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~-~~~~~~~~~l 328 (365)
+| ++.|+++|+++|+.+++. ++++|++|++++.+++.|++|+||||+|+|||+++|++. +.++++.+.+
T Consensus 237 ~d---------~~~lg~~m~~~~~~l~~~-~v~~p~l~~l~~~~~~~Ga~gaklSGsG~GG~v~al~~~~~~a~~~~~~l 306 (328)
T PTZ00298 237 GN---------LFRVGELMNANHDLCQKL-TVSCRELDSIVQTCRTYGALGAKMSGTGRGGLVVALAASEDQRDAIAKAV 306 (328)
T ss_pred CC---------HHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHhCCCceeEeccCCCCeEEEEEecchhhHHHHHHHH
Confidence 88 999999999999999965 789999999999999999999999999999999999976 5788899999
Q ss_pred HHHHHhccc
Q 017802 329 KEQFYQSRI 337 (365)
Q Consensus 329 ~~~y~~~~~ 337 (365)
++.|...++
T Consensus 307 ~~~~~~~~~ 315 (328)
T PTZ00298 307 RARCPEAKF 315 (328)
T ss_pred HHHhhhcCC
Confidence 988876654
No 14
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=100.00 E-value=4.5e-31 Score=241.24 Aligned_cols=211 Identities=20% Similarity=0.273 Sum_probs=167.4
Q ss_pred eEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEeecC
Q 017802 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFN 93 (365)
Q Consensus 15 ~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~i~~~ 93 (365)
++++..+++|+|+|||||||++||++.|+..+-|..+++++||++|+.+|+ .++...|.|||++++|||++ |++|+
T Consensus 90 ~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFn---fMEf~ 166 (333)
T COG2605 90 IELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFN---FMEFR 166 (333)
T ss_pred eEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccHHHHHhCCce---EEEEc
Confidence 999999999999999999999999999999999999999999999999998 88999999999999999976 78876
Q ss_pred C---CceEeeecCC------CcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhh
Q 017802 94 P---IRTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 164 (365)
Q Consensus 94 ~---~~~~~~~~p~------~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~ 164 (365)
+ ..+.|+++.. ..+++|+++
T Consensus 167 ~~~~V~v~pL~i~~e~~~Ele~~~lL~yT--------------------------------------------------- 195 (333)
T COG2605 167 GNGEVVVNPLRINRERTAELEARLLLYYT--------------------------------------------------- 195 (333)
T ss_pred CCCcEEEeecccchhHHHHHHhceEEEEe---------------------------------------------------
Confidence 5 3455554432 134444444
Q ss_pred hhhhhhcCCCC-CChhH-HHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHH
Q 017802 165 LCVAFACKNGS-SDPVF-AVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHA 242 (365)
Q Consensus 165 ~~~~~~~~~~~-~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~ 242 (365)
|.+|. ++++. ++++...++ ++. .++.|-+. .-+.+
T Consensus 196 ------Gi~R~Ss~V~~dQ~~~~~~~~----~~~-------------------------------~e~~~~mk--~~A~~ 232 (333)
T COG2605 196 ------GITRQSSEVIEDQVRNVVDGD----EET-------------------------------LEALHEMK--ALAYE 232 (333)
T ss_pred ------ccccchhHHHHHHHHHhhccc----HHH-------------------------------HHHHHHHH--HHHHH
Confidence 44432 23332 332222211 000 11122222 12456
Q ss_pred HHHHHhcccccccchHHHHHHHHHHHHHHHHHhhhh-cCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCCcH
Q 017802 243 FKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESID 321 (365)
Q Consensus 243 ~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~-~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~~~ 321 (365)
+.++|.++| +.+||++|+.+|+..+.+ -++|+|.||.|++.|+++||+|+|++|||+||+++.+|+|++.
T Consensus 233 ~~~al~~nd---------~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~~GA~~gKl~GaG~gGFllf~~~p~k~ 303 (333)
T COG2605 233 MKDALVRND---------IPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKNGAYGGKLSGAGGGGFLLFFCDPSKR 303 (333)
T ss_pred HHHHHHhcc---------hHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHhcCchhceeeccCCccEEEEEeCccch
Confidence 788999888 999999999999999888 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 017802 322 SQFILNLKEQ 331 (365)
Q Consensus 322 ~~~~~~l~~~ 331 (365)
++++++|++.
T Consensus 304 ~~l~r~l~~~ 313 (333)
T COG2605 304 NELARALEKE 313 (333)
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 15
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.97 E-value=2.4e-30 Score=244.14 Aligned_cols=196 Identities=30% Similarity=0.390 Sum_probs=151.0
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEee
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~i~ 91 (365)
.++++++.|+||.++|||||||+++|++.|++++++.++++++++++|+++|+ ++|.++| +|++++++|| +++++
T Consensus 77 ~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~sG-~D~~~~~~Gg---~~~~~ 152 (273)
T TIGR00549 77 PPLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKPSG-IDTATSTYGG---PVYFE 152 (273)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCch-HhHHHHhcCC---eEEEE
Confidence 34999999999999999999999999999999999999999999999999998 7899999 6999999998 34555
Q ss_pred cCCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 017802 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (365)
Q Consensus 92 ~~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~~ 171 (365)
.... ..+++.|.++.+++++|+.++++... .+.+
T Consensus 153 ~~~~-~~~~~~~~~~~lvl~~tg~~~~T~~~---------------~~~v------------------------------ 186 (273)
T TIGR00549 153 KGEG-EFTKLISLDGYFVIADTGVSGSTKEA---------------VARV------------------------------ 186 (273)
T ss_pred cCCC-ceeeccCCCeEEEEEECCCCCcHHHH---------------HHHH------------------------------
Confidence 4432 23444455789999999985432210 0000
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhccc
Q 017802 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (365)
Q Consensus 172 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d 251 (365)
++.+...+ +.. + ...+++. .++.+++.+|.++|
T Consensus 187 -----------~~~~~~~~---~~~--------~-------------------~~~~~~~------~~~~~~~~al~~~d 219 (273)
T TIGR00549 187 -----------RQLLERFP---ELI--------D-------------------SIMDAIG------ELTLEAKAALQDGD 219 (273)
T ss_pred -----------HHHHHhCH---HHH--------H-------------------HHHHHHH------HHHHHHHHHHHhCC
Confidence 00000000 000 0 0111111 25677889999988
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEE
Q 017802 252 RLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVAL 315 (365)
Q Consensus 252 ~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L 315 (365)
++.||++|+++|..+++. ++++|++|+|++.+++.|++|+||||||+|||+++|
T Consensus 220 ---------~~~lg~l~~~~~~~l~~~-~vs~p~l~~l~~~~~~~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 220 ---------VESLGELMNINQGLLKAL-GVSHPKLDQLVETARKAGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred ---------HHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHCCCceeeeccCCCCceEEeC
Confidence 999999999999999875 899999999999999999999999999999999986
No 16
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.97 E-value=2.5e-29 Score=245.75 Aligned_cols=214 Identities=18% Similarity=0.196 Sum_probs=160.7
Q ss_pred cCCceEEEEEecCCCC----CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCC
Q 017802 11 KFQLFNHINSLFFNLG----SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSG 85 (365)
Q Consensus 11 ~~~g~~i~i~s~iP~g----~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~ 85 (365)
..+||++.|.|++|.+ +|||||||++||++.|++.+++.++++++++++|+.+|+ ++|.++| +|++++++||.
T Consensus 97 ~~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l~~~~l~~lA~~~E~~~~g~~sg-~D~~a~~~GG~- 174 (358)
T TIGR01220 97 KLPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLELSNDEIFKLAMLATAELQPKGSC-GDIAASTYGGW- 174 (358)
T ss_pred CCCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhCCCCCc-chhhhhhhCCE-
Confidence 3468999999999984 699999999999999999999999999999999999998 5666665 79999999994
Q ss_pred eEEEeecC----------------------CCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHH
Q 017802 86 FAELIDFN----------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 143 (365)
Q Consensus 86 ~~~~i~~~----------------------~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~ 143 (365)
+.|-.+. +..++++++|++++|++++|+.++++..
T Consensus 175 -i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~l~v~~tg~~~~T~~---------------------- 231 (358)
T TIGR01220 175 -IAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAPKGLTLLIGWTGSPASTAS---------------------- 231 (358)
T ss_pred -EEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCCCCCEEEEEeCCCCcCcHH----------------------
Confidence 2232332 1236778877789999999998643221
Q ss_pred HhCCCchhhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhh
Q 017802 144 KLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 223 (365)
Q Consensus 144 ~~~~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (365)
+++.|++...+.+ +.+.
T Consensus 232 ----------------------------------~v~~V~~~~~~~~---~~~~-------------------------- 248 (358)
T TIGR01220 232 ----------------------------------LVSDVHRRKWRGS---ASYQ-------------------------- 248 (358)
T ss_pred ----------------------------------HHHHHHHHhhcCh---HHHH--------------------------
Confidence 1111111111110 0000
Q ss_pred HHHHHHHhHHHHHhhhHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhhhh-----cCCCChHHHHHHHHHHhCCC
Q 017802 224 YKLHQRAAHVYSEAKRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVL-----YECSCPELEELVNVCRNNGA 298 (365)
Q Consensus 224 ~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~-----~~~s~peld~lv~~a~~~Ga 298 (365)
...+++..+ +.+++++|.++| ++.||++|+++|+.|+.+ .++|+|+++.|++.+++.|+
T Consensus 249 -~~l~~~~~i------~~~~~~al~~~d---------~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~~ga 312 (358)
T TIGR01220 249 -RFLETSTDC------VESAITAFETGD---------ITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEAYGG 312 (358)
T ss_pred -HHHHHHHHH------HHHHHHHHHhCC---------HHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhhcCc
Confidence 011222222 456778999888 999999999999999976 38999999999999999997
Q ss_pred cEEEEccccCcceEEEEEcCC-cHHHHHHHHH
Q 017802 299 LGARLTGAGWGGCVVALVKES-IDSQFILNLK 329 (365)
Q Consensus 299 ~GakisGaG~GG~vi~L~~~~-~~~~~~~~l~ 329 (365)
|||+||||+|||+++|++++ ..+++.++|+
T Consensus 313 -~aKlsGAGgGg~~ial~~~~~~~~~~~~~~~ 343 (358)
T TIGR01220 313 -AAKPSGAGGGDCGIAILDAEADITHVRQRWE 343 (358)
T ss_pred -eecCCCCCCcCEEEEEeCCchhHHHHHHHHH
Confidence 99999999999999999764 4555555554
No 17
>PRK03926 mevalonate kinase; Provisional
Probab=99.97 E-value=9.6e-29 Score=236.65 Aligned_cols=226 Identities=26% Similarity=0.257 Sum_probs=169.0
Q ss_pred CCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEe
Q 017802 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (365)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~i 90 (365)
.+|+++++.++||+++|||||||+++|++.+++++++.++++++++++|.++|+ +.|.++| +|++++++||. .+.
T Consensus 73 ~~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G~~sg-~D~~~~~~Gg~---~~~ 148 (302)
T PRK03926 73 KDGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGAASP-TDTYVSTMGGF---VTI 148 (302)
T ss_pred CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCCCch-HHHHHHhcCCe---EEE
Confidence 369999999999999999999999999999999999999999999999999998 7799888 79999999984 233
Q ss_pred ecCCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 017802 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (365)
Q Consensus 91 ~~~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~ 170 (365)
.... ++++| ++.+++++|+.+.++... | +.++. ++.
T Consensus 149 ~~~~----~l~~~-~~~~vl~~~~~~~sT~~~----~-----------~~~~~---------------~~~--------- 184 (302)
T PRK03926 149 PDRK----KLPFP-ECGIVVGYTGSSGSTKEL----V-----------ANVRK---------------LKE--------- 184 (302)
T ss_pred cCCC----cCCCC-CceEEEEECCCCCcHHHH----H-----------HHHHH---------------HHH---------
Confidence 3221 44443 788999999875432210 0 00100 000
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhcc
Q 017802 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (365)
Q Consensus 171 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~ 250 (365)
..+ +.+. + ...+..+ -+.++.+++.++
T Consensus 185 --------------~~~------~~~~--------~-------------------~~~~~~~------~~~~~~~al~~~ 211 (302)
T PRK03926 185 --------------EYP------ELIE--------P-------------------ILSSIGK------ISEKGEELILSG 211 (302)
T ss_pred --------------hCH------HHHH--------H-------------------HHHHHHH------HHHHHHHHHhcC
Confidence 000 0000 0 0011111 123445778888
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCCcHHHHHHHHHH
Q 017802 251 LRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 330 (365)
Q Consensus 251 d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~~~~~~~~~l~~ 330 (365)
| ++.|+++|+++|..+.. +++++|+++++++.+++.|++|+||||||+|||+++|++++.++++.+.+++
T Consensus 212 d---------~~~l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~~ga~ga~lSGaG~Gg~v~~l~~~~~~~~~~~~~~~ 281 (302)
T PRK03926 212 D---------YVSLGELMNINQGLLDA-LGVSTKELSELIYAARTAGALGAKITGAGGGGCMVALAAPEKQSEVATAIKI 281 (302)
T ss_pred C---------HHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhCCCceeeeccCCCCCEEEEEeccccHHHHHHHHHh
Confidence 8 99999999999976654 5899999999999999999999999999999999999988778888877764
Q ss_pred HHHhcccCCCcccCCCCcceEEEeeCCC-ceeecc
Q 017802 331 QFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 364 (365)
Q Consensus 331 ~y~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 364 (365)
. ...++++++.+ |++|.+
T Consensus 282 ~----------------~~~~~~~~~~~~G~~i~~ 300 (302)
T PRK03926 282 A----------------GGKPIITKITDEGLRIEE 300 (302)
T ss_pred c----------------CCeEEEEecCCCeeEEEe
Confidence 2 12578999965 998865
No 18
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.97 E-value=3e-29 Score=234.05 Aligned_cols=243 Identities=23% Similarity=0.308 Sum_probs=178.4
Q ss_pred HhhcCCc----eEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCH--------H--H-HHHHHHHhhh-hhCCCC
Q 017802 8 IITKFQL----FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------K--E-IAQLTCECEQ-FIGTQS 71 (365)
Q Consensus 8 ~~~~~~g----~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~--------~--e-l~~la~~~E~-~~g~~~ 71 (365)
++.+.+| +++.++|++|+|+|||||||++|+++.+++.++|.-.++ . + +-+.|.+.|+ ++|+|+
T Consensus 121 l~~~~~g~lp~~~v~v~SelP~GaGLGSSAa~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpS 200 (397)
T KOG1511|consen 121 LCLRAPGTLPALTVVVDSELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPS 200 (397)
T ss_pred hhhcccCCCcceEEEEeccCCCcCCcchhHHHHHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCc
Confidence 4445566 999999999999999999999999999999988853222 3 3 3477999998 889999
Q ss_pred CchhHHHHHhhcCCeEEEeecCCC-ceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCch
Q 017802 72 GGMDQAISIMAKSGFAELIDFNPI-RTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQ 150 (365)
Q Consensus 72 G~~D~~~~~~Gg~~~~~~i~~~~~-~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~ 150 (365)
| .|+++|+||| .+.|++. .++.+...+.++++++||.+|+++...
T Consensus 201 G-iDnaV~t~Gg-----~i~f~kg~~~~~Lk~~~~L~illtnTrv~RnTk~l---------------------------- 246 (397)
T KOG1511|consen 201 G-IDNAVCTYGG-----LISFKKGVEIESLKHLPPLRILLTNTRVPRNTKAL---------------------------- 246 (397)
T ss_pred c-cchhhhccCc-----eEEeecCccceecccCCCceEEEEccccCccHHHH----------------------------
Confidence 8 9999999999 5777654 666776556899999999998765432
Q ss_pred hhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHH
Q 017802 151 EAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA 230 (365)
Q Consensus 151 ~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 230 (365)
|+.|++...+ ++++++..++++
T Consensus 247 ----------------------------Va~Vr~~~~k---------------fPevi~~i~~ai--------------- 268 (397)
T KOG1511|consen 247 ----------------------------VAGVRELLEK---------------FPEVIKAIFDAI--------------- 268 (397)
T ss_pred ----------------------------HHHHHHHHHh---------------hhHHHHHHHHHH---------------
Confidence 1112211110 122221111111
Q ss_pred hHHHHHhhhHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcc
Q 017802 231 AHVYSEAKRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGG 310 (365)
Q Consensus 231 ~~~~~E~~rv~~~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG 310 (365)
..+ ..+++.++.+.+.. .+...-+.+.+|+..||..|..+ |+|+|.+|.++..+++.| +.+|+||||+||
T Consensus 269 d~i------s~ea~~il~~e~~~--~~~~~Eq~L~eLi~iNq~LL~al-GVsH~~le~v~~~t~k~g-i~sKLTGAGgGG 338 (397)
T KOG1511|consen 269 DEI------SLEAVWILQRENDE--FSSPKEQKLEELIRINQDLLDAL-GVSHPSLELVCTTTRKLG-IHSKLTGAGGGG 338 (397)
T ss_pred HHH------HHHHHHHHhccccc--CCCcHHHHHHHHHHHhHHHHHHh-CCCcHHHHHHHHHHHHhC-cceecccCCCCc
Confidence 111 12233344432200 01111225999999999999988 999999999999999999 788999999999
Q ss_pred eEEEEEcCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeecc
Q 017802 311 CVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 364 (365)
Q Consensus 311 ~vi~L~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 364 (365)
|+++|++++...+.++.++++...++| .+|.+..+. |++|.+
T Consensus 339 c~itlL~~~~~qe~i~~~ke~L~s~gf------------~v~~t~lGG~G~~v~s 381 (397)
T KOG1511|consen 339 CVITLLKPGTEQEQIDKWKEELESHGF------------EVFETELGGPGVSVHS 381 (397)
T ss_pred eEEEEECCCCchHHHHHHHHHHHhcCc------------ceeeccCCCCceEEEe
Confidence 999999999888899999999988877 699988876 998864
No 19
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.97 E-value=1.1e-28 Score=261.19 Aligned_cols=213 Identities=16% Similarity=0.169 Sum_probs=161.9
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
.||+++|.++||+|+|||||||+++|++.|++++++.++++++++++|..+|+.++.++|++||+++++|| +.++++
T Consensus 725 ~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~ela~~A~~~E~~lhg~~g~qDq~~a~~GG---~~~i~~ 801 (974)
T PRK13412 725 SGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQYGGVLPG---VKLLQT 801 (974)
T ss_pred CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchhhhhhHhcCC---eEEEEe
Confidence 69999999999999999999999999999999999999999999999999999777777889999999999 446665
Q ss_pred CC-----CceEeeecCC------CcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchh
Q 017802 93 NP-----IRTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSD 161 (365)
Q Consensus 93 ~~-----~~~~~~~~p~------~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~ 161 (365)
.+ ..+.+++.+. +-+++|++|+++++++.
T Consensus 802 ~~~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR~T~~---------------------------------------- 841 (974)
T PRK13412 802 GAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGITRTAKG---------------------------------------- 841 (974)
T ss_pred cCCcccCcceeecCcchhhhhhccCcEEEEECCCeeeHHH----------------------------------------
Confidence 43 1244454332 34689999998543221
Q ss_pred hhhhhhhhhcCCCCCChhHH-HHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhH
Q 017802 162 VEGLCVAFACKNGSSDPVFA-VKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV 240 (365)
Q Consensus 162 v~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv 240 (365)
+++. ++.+..+. +... .+.+++..+ +
T Consensus 842 ----------------iV~~Vv~~~~~~~----~~~~---------------------------~~l~~ig~L------a 868 (974)
T PRK13412 842 ----------------ILAEIVRSMFLNS----TAHL---------------------------QLLHEMKAH------A 868 (974)
T ss_pred ----------------HHHHHHHHHHhCc----HHHH---------------------------HHHHHHHHH------H
Confidence 0111 11111100 0000 011222222 4
Q ss_pred HHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhhhh-cCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcC-
Q 017802 241 HAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE- 318 (365)
Q Consensus 241 ~~~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~-~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~- 318 (365)
.+++++|.++| +++||++|+++|..++.+ .++|+|++|.|++.+++ |++|+|+||||+|||+++|+++
T Consensus 869 ~ea~~ALe~gD---------~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~~-gAlGaKLTGAGGGGcvI~Lak~~ 938 (974)
T PRK13412 869 LDMYEAIQRGE---------FEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIKD-YTLGYKLPGAGGGGYLYMVAKDP 938 (974)
T ss_pred HHHHHHHHcCC---------HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHc-CCcEEEecccCcccEEEEEECCh
Confidence 56778999998 999999999999999988 58999999999999965 7999999999999999999964
Q ss_pred CcHHHHHHHHHHH
Q 017802 319 SIDSQFILNLKEQ 331 (365)
Q Consensus 319 ~~~~~~~~~l~~~ 331 (365)
+.++++.+.+++.
T Consensus 939 ~~a~~I~~~L~~~ 951 (974)
T PRK13412 939 GAAERIRKILTEN 951 (974)
T ss_pred hhHHHHHHHHHhc
Confidence 5677777777653
No 20
>PLN02451 homoserine kinase
Probab=99.93 E-value=2.9e-24 Score=210.27 Aligned_cols=225 Identities=20% Similarity=0.245 Sum_probs=169.6
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHH-HHhhcCCeEEEe
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAI-SIMAKSGFAELI 90 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~-~~~Gg~~~~~~i 90 (365)
+|++++|.++||.++|||||||+++|++.+++++++.+++++++++++.++|. ..|. + +|+++ +++||. .+.
T Consensus 133 ~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~la~~~E~~v~g~-h--~Dnva~a~~GG~---v~~ 206 (370)
T PLN02451 133 VGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESEAKVSGY-H--ADNIAPALMGGF---VLI 206 (370)
T ss_pred CCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhchhcCC-C--ccchhHhhcCCE---EEE
Confidence 58999999999999999999999999999999999999999999999999997 4454 2 79986 689984 333
Q ss_pred e-cCCCceEeeecC--CCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhh
Q 017802 91 D-FNPIRTTDVQLP--AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCV 167 (365)
Q Consensus 91 ~-~~~~~~~~~~~p--~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~ 167 (365)
. ..+..+.++++| ++|.+++++|+.+.+|.. +.+.+...
T Consensus 207 ~~~~~~~~~~~~~p~~~~~~~Vlv~P~~~~sT~~---------------ar~~lp~~----------------------- 248 (370)
T PLN02451 207 RSYEPLHLIPLRFPSAKDLFFVLVSPDFEAPTKK---------------MRAALPKE----------------------- 248 (370)
T ss_pred EecCCCeEEEeecCCCCCeEEEEEcCCCCccHHH---------------HHHHHhhh-----------------------
Confidence 3 344556666666 579999999987432211 11111110
Q ss_pred hhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHH
Q 017802 168 AFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV 247 (365)
Q Consensus 168 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al 247 (365)
+.. . .+ +....|+..+..+|
T Consensus 249 -----------------------~~~----------------------------------~--~~-v~~~~~~~~l~~al 268 (370)
T PLN02451 249 -----------------------IPM----------------------------------K--HH-VWNCSQAAALVAAI 268 (370)
T ss_pred -----------------------cch----------------------------------h--hH-HHHHHHHHHHHHHH
Confidence 000 0 00 00112344566788
Q ss_pred hcccccccchHHHHHHHHHHHHHH--HHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcC-CcHHHH
Q 017802 248 SSNLRLLCSEEDKLKKLGDLMNDS--HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQF 324 (365)
Q Consensus 248 ~~~d~~~~~~~~~~~~lg~lm~~s--h~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~-~~~~~~ 324 (365)
.++| ++.++++|++. |+..+ ..++|+++++++.+++.|++|++|||+| +|+++|++. +.++++
T Consensus 269 ~~~d---------~~~l~~~m~nD~~~e~~r---~~~~P~l~~l~~~~~~~GA~ga~mSGSG--ptvfal~~~~~~a~~i 334 (370)
T PLN02451 269 LQGD---------AVLLGEALSSDKIVEPTR---APLIPGMEAVKKAALEAGAYGCTISGAG--PTAVAVIDDEEKGEEV 334 (370)
T ss_pred HcCC---------HHHHHHHHHHHHHhHHHH---hhhCccHHHHHHHHHHCCCeEEEEEccc--hheEEEEcCHHHHHHH
Confidence 8888 99999999865 55555 3579999999999999999999999877 899999985 468899
Q ss_pred HHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeecc
Q 017802 325 ILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 364 (365)
Q Consensus 325 ~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 364 (365)
.+++++.|.+.+. ..+.++++++++ |+++.+
T Consensus 335 ~~~l~~~~~~~~~---------~~~~~~~~~~d~~Ga~v~~ 366 (370)
T PLN02451 335 GERMVEAFRKAGN---------LKATASVKKLDRVGARLVE 366 (370)
T ss_pred HHHHHHHHHHhcC---------CCceEEEeccCCCCeEEEe
Confidence 9999888865442 467899999987 999864
No 21
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.92 E-value=8e-23 Score=191.91 Aligned_cols=219 Identities=25% Similarity=0.242 Sum_probs=164.9
Q ss_pred ceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHH-HHhhcCCeEEEeec
Q 017802 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAI-SIMAKSGFAELIDF 92 (365)
Q Consensus 14 g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~-~~~Gg~~~~~~i~~ 92 (365)
++++.+.++||.++|||||+|.+||.+.+++++++.+++++++.+++...|. + .||.+ +++||. .+..+.
T Consensus 77 ~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~Eg-----H--pDNVapa~lGG~--~l~~~~ 147 (299)
T COG0083 77 GVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEG-----H--PDNVAPAVLGGL--VLVEEE 147 (299)
T ss_pred cEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcC-----C--CchHHHHhhCCE--EEEeec
Confidence 3999999999999999999999999999999999999999999999999993 2 58875 899994 222333
Q ss_pred CCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcC
Q 017802 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (365)
Q Consensus 93 ~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~~~ 172 (365)
.++...++++|.+|+++++.|+++-+| +.++++|.+
T Consensus 148 ~~~~~~~v~~~~~~~~v~~iP~~e~sT---------------~~aR~vLP~----------------------------- 183 (299)
T COG0083 148 SGIISVKVPFPSDLKLVVVIPNFEVST---------------AEARKVLPK----------------------------- 183 (299)
T ss_pred CCceEEEccCCcceEEEEEeCCccccH---------------HHHHHhccc-----------------------------
Confidence 556677788888999999999874322 123333322
Q ss_pred CCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhcccc
Q 017802 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLR 252 (365)
Q Consensus 173 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~ 252 (365)
. |+.++. +....|+.-++.+|.++|
T Consensus 184 ----------------~-~~~~da-------------------------------------V~n~s~~a~lv~al~~~~- 208 (299)
T COG0083 184 ----------------S-YSRKDA-------------------------------------VFNLSRAALLVAALLEGD- 208 (299)
T ss_pred ----------------c-CCHHHH-------------------------------------HHHHHHHHHHHHHHHcCC-
Confidence 1 322211 222346677889999988
Q ss_pred cccchHHHHHHHHHHHHH-HHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCCcHHHHHHHHHHH
Q 017802 253 LLCSEEDKLKKLGDLMND-SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQ 331 (365)
Q Consensus 253 ~~~~~~~~~~~lg~lm~~-sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~~~~~~~~~l~~~ 331 (365)
.+.+...|.+ -|+.+|.. .-|.++++.+.+.+.|++|+-+|||| +++++++++...+...+.+ +.
T Consensus 209 --------~~l~~~~~~D~ihepyR~~---L~P~~~~v~~~a~~~gA~g~~lSGAG--PTi~al~~~~~~e~~~~~~-~~ 274 (299)
T COG0083 209 --------PELLRAMMKDVIHEPYRAK---LVPGYAEVREAALEAGALGATLSGAG--PTVFALADESDAEKAAALL-EE 274 (299)
T ss_pred --------HHHHHHHhccccchhhhhh---hCccHHHHHHHHhhCCceEEEEecCC--CeEEEEeccchhhHHHHHH-HH
Confidence 8888888887 59999965 57999999999999999999999998 9999999887344444444 45
Q ss_pred HHhcccCCCcccCCCCcceEEEee-CCCceeecc
Q 017802 332 FYQSRIDRGVINNNDLGLYVFASK-PSSGAAKFK 364 (365)
Q Consensus 332 y~~~~~~~~~~~~~~~~~~~~~~~-p~~Ga~v~~ 364 (365)
++++++ .+.++++. .++|++++.
T Consensus 275 ~~~~~~----------~~~~~~~~~~~~G~~~v~ 298 (299)
T COG0083 275 LYEQGI----------KGRVHILALDSDGARVVE 298 (299)
T ss_pred HHHhCC----------cceEEEEeecCCcceEec
Confidence 554443 55666654 456987764
No 22
>PRK01212 homoserine kinase; Provisional
Probab=99.92 E-value=7.1e-23 Score=196.04 Aligned_cols=219 Identities=23% Similarity=0.246 Sum_probs=162.6
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEe-e
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI-D 91 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i-~ 91 (365)
+|++++|.++||.++|||||||.++|++.+++++++.+++.++++++|.++|. + ..|...+++||. .+. +
T Consensus 80 ~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~-----~-~ddv~~~l~GG~---~~~~~ 150 (301)
T PRK01212 80 PGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEG-----H-PDNVAPALLGGL---VLALE 150 (301)
T ss_pred CCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-----C-HHHHHHHHhCCE---EEEEE
Confidence 58999999999999999999999999999999999999999999999999984 1 124556899994 333 3
Q ss_pred cCCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 017802 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (365)
Q Consensus 92 ~~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~~ 171 (365)
..+..+.++++|+++++++++|+...+|. .+.+.+
T Consensus 151 g~g~~~~~~~~~~~~~~vlv~p~~~~sT~---------------~a~~~l------------------------------ 185 (301)
T PRK01212 151 ENGVISVKIPVFDDLKWVVAIPNIELSTA---------------EARAVL------------------------------ 185 (301)
T ss_pred CCceEEEEecCCCCeEEEEEECCCcCCHH---------------HHHHhC------------------------------
Confidence 55666788887778999999997632211 111000
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhccc
Q 017802 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (365)
Q Consensus 172 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d 251 (365)
++. +... +.+.+..|+..+..+|.++|
T Consensus 186 ---------------~~~-~~~~-------------------------------------~~~~~~~~~~~l~~al~~~d 212 (301)
T PRK01212 186 ---------------PKQ-YSLK-------------------------------------DAVFNSSRAALLVAALYTGD 212 (301)
T ss_pred ---------------cCc-CCHH-------------------------------------HHHHHHHHHHHHHHHHhhCC
Confidence 000 0000 00111234556778888888
Q ss_pred ccccchHHHHHHHHHHHHH-HHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCCcHHHHHHHHHH
Q 017802 252 RLLCSEEDKLKKLGDLMND-SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 330 (365)
Q Consensus 252 ~~~~~~~~~~~~lg~lm~~-sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~~~~~~~~~l~~ 330 (365)
++.++++|++ .|+..+.. .+|+++++++.+++.|++|++|||+| +|+++|+++...+++.+.+++
T Consensus 213 ---------~~~~~~~~~~~~~~~~~~~---~~p~~~~i~~~~~~~Ga~g~~~SGsG--ptv~~l~~~~~~~~~~~~l~~ 278 (301)
T PRK01212 213 ---------YELAGRAMKDVLHEPYRAK---LIPGFAEVRQAALEAGALGAGISGAG--PTVFALCDKEDAEKVADALQK 278 (301)
T ss_pred ---------HHHHHHHhchhheHHhHHh---hCCCHHHHHHHHHHCCCeEEEEEchh--hheeEEeccccHHHHHHHHHH
Confidence 9999999854 35555432 46999999999999999999999877 999999987655888888887
Q ss_pred HHHhcccCCCcccCCCCcceEEEeeCCC-ceeec
Q 017802 331 QFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 363 (365)
Q Consensus 331 ~y~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 363 (365)
.| ..+ .++.++++++++ |++++
T Consensus 279 ~~-~~~----------~~~~~~~~~~~~~G~~~~ 301 (301)
T PRK01212 279 AF-LQG----------IEGFVHVLRLDTAGARVL 301 (301)
T ss_pred hh-ccC----------CCeEEEEeccCCCceEeC
Confidence 76 222 367899999987 99874
No 23
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.89 E-value=1.4e-21 Score=187.26 Aligned_cols=216 Identities=20% Similarity=0.228 Sum_probs=149.8
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhH-HHHHhhcCCeEEEee
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQ-AISIMAKSGFAELID 91 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~-~~~~~Gg~~~~~~i~ 91 (365)
+|+++.|.++||.++|||||||+++|++.+++++++.+++.++++++|.++|. + .|+ .++++||. .+..
T Consensus 79 ~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E~-----h--~Dnv~~~l~GG~---~~~~ 148 (302)
T TIGR00191 79 PPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELEG-----H--PDNVAPALLGGF---QLAF 148 (302)
T ss_pred CCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhcC-----C--cccHHHHhccCE---EEEE
Confidence 58999999999999999999999999999999999999999999999999994 1 575 45889994 3333
Q ss_pred cCCCceEeeecC--CCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 017802 92 FNPIRTTDVQLP--AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (365)
Q Consensus 92 ~~~~~~~~~~~p--~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~ 169 (365)
.+...+.++++| +++.+++++|+.+.+|.. +.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~vl~~p~~~~sT~~---------------a~~~l---------------------------- 185 (302)
T TIGR00191 149 VEDDKLEVLKIPIFSKLDWVLAIPNIEVSTAE---------------ARAVL---------------------------- 185 (302)
T ss_pred EcCCceEEEEeCCCCCEEEEEEECCCcccHHH---------------HHHhC----------------------------
Confidence 333334555444 689999999987432211 11111
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhc
Q 017802 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (365)
Q Consensus 170 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~ 249 (365)
++. ++..+. +....|+..+..++.+
T Consensus 186 -----------------p~~-~~~~~~-------------------------------------v~~~~~~~~l~~al~~ 210 (302)
T TIGR00191 186 -----------------PKA-YPRQDL-------------------------------------VFNLSHLAGLVHAIYQ 210 (302)
T ss_pred -----------------ccc-CCHHHH-------------------------------------HHHHHHHHHHHHHHHc
Confidence 000 110000 0001123334567776
Q ss_pred ccccccchHHHHHHHHHHHHHH--HHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCCcHHH-HHH
Q 017802 250 NLRLLCSEEDKLKKLGDLMNDS--HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQ-FIL 326 (365)
Q Consensus 250 ~d~~~~~~~~~~~~lg~lm~~s--h~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~~~~~-~~~ 326 (365)
++ + .+++.+.+. |+.++. ..+|+++++++.+++.|++|++|||+| +|+++|++++...+ +.+
T Consensus 211 ~~---------~-~l~~~~~~d~l~e~~~~---~l~p~l~~i~~~~~~~Ga~g~~lSGsG--ptv~al~~~~~~~~~~~~ 275 (302)
T TIGR00191 211 KK---------P-DLGAIMMKDRIHQPYRE---SLIPNLFKIKQAALEKGAYGITISGSG--PTILAMADEEFAEQKEQD 275 (302)
T ss_pred CC---------H-HHHHHHcccccchhhHh---hhCCCHHHHHHHHHHCCCeEEEEEchh--hhheEEecchhhHHHHHH
Confidence 65 4 356665544 566664 369999999999999999999999888 99999998764433 444
Q ss_pred HHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceee
Q 017802 327 NLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAK 362 (365)
Q Consensus 327 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v 362 (365)
.++ ..++.+ ..+.++++++++ |+++
T Consensus 276 ~~~-~~~~~~----------~~~~~~~~~~~~~Ga~~ 301 (302)
T TIGR00191 276 LLE-VLHKQG----------IEGTVHVLDFDNDGARV 301 (302)
T ss_pred HHH-HHHhcC----------CCeEEEEcccCCCCeEe
Confidence 444 333322 367899999987 9986
No 24
>PTZ00299 homoserine kinase; Provisional
Probab=99.87 E-value=7.1e-21 Score=183.67 Aligned_cols=223 Identities=21% Similarity=0.174 Sum_probs=161.0
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHhhhhhCCCCCchhHH-HHHhhcCCeEE
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVP---KKEIAQLTCECEQFIGTQSGGMDQA-ISIMAKSGFAE 88 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~---~~el~~la~~~E~~~g~~~G~~D~~-~~~~Gg~~~~~ 88 (365)
+|+++++.++||.++|||||||.++|.+.+++++++.+++ .+++.++|.++|. + .||. .+++||. .
T Consensus 81 ~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~EG-----H--pDNVapal~GG~---~ 150 (336)
T PTZ00299 81 PPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFEG-----H--PDNAAPAIYGGI---Q 150 (336)
T ss_pred CceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhhcC-----C--cccHHHHHhCCE---E
Confidence 5899999999999999999999999999999999999885 7999999999982 1 6855 5899994 2
Q ss_pred Eeec-CC--CceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhh
Q 017802 89 LIDF-NP--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGL 165 (365)
Q Consensus 89 ~i~~-~~--~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~ 165 (365)
.... .+ ....+++.|+++.++++.|+..- ..+| +.+.++|
T Consensus 151 ~~~~~~~ge~~~~~i~~~~~~~~vv~iP~~~~-~~sT------------~~aR~vL------------------------ 193 (336)
T PTZ00299 151 LVYKKDNGRFLTYRVPTPPNLSVVLFVPHNKM-KANT------------HVTRNLI------------------------ 193 (336)
T ss_pred EEEecCCCceEEEecCCCCCeEEEEEECCCCc-cccH------------HHHHhhC------------------------
Confidence 2222 22 23456777778999999997620 0011 0111111
Q ss_pred hhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHH
Q 017802 166 CVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKD 245 (365)
Q Consensus 166 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~ 245 (365)
++. ++.+ ..+....|+..++.
T Consensus 194 ---------------------P~~-v~~~-------------------------------------dav~n~~~~~~lv~ 214 (336)
T PTZ00299 194 ---------------------PTS-VSLE-------------------------------------DAVFNISRTSILVL 214 (336)
T ss_pred ---------------------ccc-CcHH-------------------------------------HHHHhhhHHHHHHH
Confidence 111 1110 01111234445678
Q ss_pred HHhcccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcC-------
Q 017802 246 TVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE------- 318 (365)
Q Consensus 246 al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~------- 318 (365)
+|.++| ++.+..+...-|+..|.. -..|+++.+.+.+.+.|++|+.||||| +++++|++.
T Consensus 215 al~~~d---------~~ll~~~~D~lhep~R~~--~liP~~~~v~~~~~~~Ga~g~~lSGSG--PTv~al~~~~~~~~~~ 281 (336)
T PTZ00299 215 ALSTGD---------LRMLKSCSDKLHEQQRSD--ALFPHFRPCVKAAREAGAHYAFLSGAG--PSVCALVGGRHGDPLT 281 (336)
T ss_pred HHHhCC---------HHHHHhchhcccCccccc--ccCccHHHHHHHHHHCCCeEEEEEchh--hhheEEeccccccccc
Confidence 898888 888865433367766631 258999999999999999999999998 999999973
Q ss_pred -----CcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeecc
Q 017802 319 -----SIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 364 (365)
Q Consensus 319 -----~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 364 (365)
+.++++.++|++.|.+.+ +.+.++++.++. |+++..
T Consensus 282 ~~~~~~~~~~i~~~~~~~~~~~~----------~~~~~~~~~~~~~G~~~~~ 323 (336)
T PTZ00299 282 QPREERKAESVAEAMIKAAEAVG----------VAGRVIITQPSDQGVHLVG 323 (336)
T ss_pred cccchhHHHHHHHHHHHHHHHcC----------CceEEEEccCCCCCcEEEe
Confidence 247789999998887654 478999999997 999863
No 25
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.87 E-value=1.2e-20 Score=176.94 Aligned_cols=99 Identities=23% Similarity=0.176 Sum_probs=82.4
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhh--CCCCCchhHHHHHhhcCCeEEEe
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFI--GTQSGGMDQAISIMAKSGFAELI 90 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~--g~~~G~~D~~~~~~Gg~~~~~~i 90 (365)
+||++++.++||.++|||||||+++|++.+++++++.+++++++++++.++|+.. +..+|.+|++++++|| +.+.
T Consensus 63 ~g~~i~i~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG---~~~~ 139 (261)
T TIGR01920 63 DGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLGG---IVIT 139 (261)
T ss_pred CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCC---EEEE
Confidence 6899999999999999999999999999999999999999999999999999843 3567789999999999 4566
Q ss_pred ecCCCceE-eeecCCCcEEEEEecCC
Q 017802 91 DFNPIRTT-DVQLPAGGTFVVAHSLA 115 (365)
Q Consensus 91 ~~~~~~~~-~~~~p~~~~~vli~s~~ 115 (365)
+.++.+.. +.++| ++.+++++|+.
T Consensus 140 ~~~~~~~~~~~~~~-~~~~vv~~p~~ 164 (261)
T TIGR01920 140 DNRRMKILKRDKLE-GCTAAVLVPKE 164 (261)
T ss_pred eCCCceEEEecCCC-CceEEEEECCC
Confidence 66554333 33433 45788888865
No 26
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.87 E-value=1.8e-20 Score=179.40 Aligned_cols=212 Identities=15% Similarity=0.132 Sum_probs=148.6
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
++++++|.|+||+++|||||||.++|++.+++++++.++++++++++|.++| .|..++++|| +.+...
T Consensus 82 ~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig---------~dv~~~~~GG---~~~~~~ 149 (300)
T PRK03188 82 PDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELG---------SDVPFALLGG---TALGTG 149 (300)
T ss_pred CCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcchhhcCC---eEEEEe
Confidence 5899999999999999999999999999999999999999999999999975 5777889998 445554
Q ss_pred CCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcC
Q 017802 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (365)
Q Consensus 93 ~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~~~ 172 (365)
++..+.+++.++++.++++.|...- +|. ..| +.+.. ++
T Consensus 150 ~g~~~~~~~~~~~~~~~lv~p~~~~---sT~-~~~-----------~~l~~---------------~~------------ 187 (300)
T PRK03188 150 RGEQLAPVLARGTFHWVLAFADGGL---STP-AVF-----------RELDR---------------LR------------ 187 (300)
T ss_pred cCCEEEECCCCCCcEEEEEeCCCCC---CHH-HHH-----------Hhchh---------------hh------------
Confidence 5455566655556666666665421 110 000 00000 00
Q ss_pred CCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhcccc
Q 017802 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLR 252 (365)
Q Consensus 173 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~ 252 (365)
. . +. +....++..+..++.++|
T Consensus 188 --------------~-~---------------~~---------------------------~~~~~~~~~~~~al~~~d- 209 (300)
T PRK03188 188 --------------E-A---------------GD---------------------------PPRLGEPDPLLAALRAGD- 209 (300)
T ss_pred --------------c-c---------------cc---------------------------ccccccHHHHHHHHHcCC-
Confidence 0 0 00 000012445667888888
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhhcCC-CChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcC-CcHHHHHHHHHH
Q 017802 253 LLCSEEDKLKKLGDLMNDSHHSCSVLYEC-SCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKE 330 (365)
Q Consensus 253 ~~~~~~~~~~~lg~lm~~sh~~lr~~~~~-s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~-~~~~~~~~~l~~ 330 (365)
++.+++.|++..+.. .+ .+|+++++++.+++.|++|++|||+| +++++|+++ +.++++.+.+++
T Consensus 210 --------~~~l~~~~~n~le~~----~~~~~p~l~~l~~~~~~~Galga~lSGsG--~tv~~l~~~~~~~~~~~~~l~~ 275 (300)
T PRK03188 210 --------PAQLAPLLGNDLQAA----ALSLRPSLRRTLRAGEEAGALAGIVSGSG--PTCAFLCADADSAVDVAAALSG 275 (300)
T ss_pred --------HHHHHHHhhCcCHHH----HHHhCchHHHHHHHHHHCCCCEEEEEccc--cceEEEeCCHHHHHHHHHHHHh
Confidence 999999986433322 23 49999999999999999999999887 778999976 346666666654
Q ss_pred HHHhcccCCCcccCCCCcceEEEeeCCC-ceeecc
Q 017802 331 QFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 364 (365)
Q Consensus 331 ~y~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 364 (365)
.+ ....++++++.+ |++|++
T Consensus 276 ----~g----------~~~~~~~~~~~~~~~~~~~ 296 (300)
T PRK03188 276 ----AG----------VCRTVRVATGPVPGARVVS 296 (300)
T ss_pred ----cC----------cceeEEEeeccccceEecc
Confidence 22 245788877654 999875
No 27
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.87 E-value=5.7e-20 Score=182.80 Aligned_cols=243 Identities=16% Similarity=0.133 Sum_probs=150.8
Q ss_pred CCceEEEEEecC-------------------C--------CCCCCChHHHHHHHHHHHHHHHhCCCC-------------
Q 017802 12 FQLFNHINSLFF-------------------N--------LGSGLSSSTAFVCSSTVALMAAFGVEV------------- 51 (365)
Q Consensus 12 ~~g~~i~i~s~i-------------------P--------~g~GLGSSaAl~va~~~al~~~~~~~l------------- 51 (365)
+++++++|.|+. + .+.|||||||++||+++||+.+++..+
T Consensus 111 l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K~GLGSSAAvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~ 190 (454)
T TIGR01219 111 LQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAKTGLGSSAAMTTALVAALLHYLGVVDLSDPDKEGKFGCS 190 (454)
T ss_pred cCceEEEEEecCCcccccchhcccccccccccccccCCCccccCccHHHHHHHHHHHHHHHHhCCccccccccccccccc
Confidence 678999998776 2 169999999999999999999999776
Q ss_pred CHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEeecCCC----------------------------ceEeeec
Q 017802 52 PKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPI----------------------------RTTDVQL 102 (365)
Q Consensus 52 ~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~i~~~~~----------------------------~~~~~~~ 102 (365)
+++.+.++|+.+|. .+|+++++.|.++++||| +.|..|.+. .++++++
T Consensus 191 ~~~~i~kLA~~ah~~~qGk~GSG~DvAaavyGg---i~Y~rfd~~~l~~~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~l 267 (454)
T TIGR01219 191 DLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGS---QRYRRFSPELISFLQVAITGLPLNEVLGTIVKGKWDNKRTEFSL 267 (454)
T ss_pred CHHHHHHHHHHHHHhhcCCCCCchhhhhhhcCc---eEEEecChhhhhhhhccccccchhhhHHHHhccCCCCceeeccC
Confidence 77899999999998 568765669999999999 567777552 2223444
Q ss_pred CCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcCCCCCChhHHH
Q 017802 103 PAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAV 182 (365)
Q Consensus 103 p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v 182 (365)
|+++++++.+++.+++| .+||+.|
T Consensus 268 P~~l~Llvgdtg~~ssT--------------------------------------------------------~~lV~~V 291 (454)
T TIGR01219 268 PPLMNLFMGDPGGGSST--------------------------------------------------------PSMVGKV 291 (454)
T ss_pred CCCCEEEEEcCCCCcCc--------------------------------------------------------HHHHHHH
Confidence 45556666665554433 3455555
Q ss_pred HHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHH-HHHHhHHHHHh--hhHHHHHHHHhcccccccchHH
Q 017802 183 KEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKL-HQRAAHVYSEA--KRVHAFKDTVSSNLRLLCSEED 259 (365)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~E~--~rv~~~~~al~~~d~~~~~~~~ 259 (365)
++|..+.+-..+++.+.++. .|+.+.. ..+... ..++ ..-.++.+.+.++.+.. ....
T Consensus 292 ~~~~~~~p~~s~~i~~~l~~-----------------aN~~~~~~l~~l~~-~~~~~~~~y~~~~~~l~~~~~~~-~~~~ 352 (454)
T TIGR01219 292 KKWQMSDPEESRENWQNLSD-----------------ANLELETKLNDLSK-LAKDHWDVYLRVIKVLTSEKCVL-HATE 352 (454)
T ss_pred HHHHHHCHHHHHHHHHHHHH-----------------HHHHHHHHHHhhhh-hhccccchhhhhhhhhccccchh-cccc
Confidence 55544432111111111110 0000000 000000 0000 00011122333331000 0011
Q ss_pred HHHHHHHHHHHHHHHhhhhc-----CCCChHHHHHHHHHHhC-CCcEEEEccccCcceEEEEEcCCcHHHHHHHHHHHHH
Q 017802 260 KLKKLGDLMNDSHHSCSVLY-----ECSCPELEELVNVCRNN-GALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 333 (365)
Q Consensus 260 ~~~~lg~lm~~sh~~lr~~~-----~~s~peld~lv~~a~~~-Ga~GakisGaG~GG~vi~L~~~~~~~~~~~~l~~~y~ 333 (365)
++..+.+.|.++.+.||.+. .|-+|++.+|++.+.+. |++||+.+|||||.|+++|+..+. ++.+.+.+.+.
T Consensus 353 ~~~~i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~--~~~~~~~~~W~ 430 (454)
T TIGR01219 353 ELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDV--DSGTKLTQAWS 430 (454)
T ss_pred cHHHHHHHHHHHHHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCCh--HHHHHHHHHHh
Confidence 37788888888888887663 45699999999999884 999999999999999999986643 24455555554
Q ss_pred h
Q 017802 334 Q 334 (365)
Q Consensus 334 ~ 334 (365)
.
T Consensus 431 ~ 431 (454)
T TIGR01219 431 S 431 (454)
T ss_pred h
Confidence 3
No 28
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.86 E-value=1.1e-20 Score=181.80 Aligned_cols=223 Identities=17% Similarity=0.182 Sum_probs=155.6
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+||+++|.++||.++|||||||+++|++.+++++++.+++.++++++|.++| .|..++++||. .+...
T Consensus 85 ~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~g---------~dv~~~~~GG~---~~~~~ 152 (312)
T PRK02534 85 GGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAELG---------SDVPFCIAGGT---QLCFG 152 (312)
T ss_pred CCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCCcEEeECCe---EEEEC
Confidence 5899999999999999999999999999999999999999999999999986 47777889984 23333
Q ss_pred CCCceEeeecCCCcEEEEE-ecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 017802 93 NPIRTTDVQLPAGGTFVVA-HSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (365)
Q Consensus 93 ~~~~~~~~~~p~~~~~vli-~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~~ 171 (365)
++..+.+++.|+++.++++ +|+...+|.. +.+.+++.
T Consensus 153 ~g~~~~~~~~~~~~~~vv~~~p~~~~~T~~---------------a~~~~~~~--------------------------- 190 (312)
T PRK02534 153 RGEILEPLPDLDGLGVVLAKYPSLSVSTPW---------------AYKTYRQQ--------------------------- 190 (312)
T ss_pred CCCEeEECCCCCCcEEEEEECCCCCccHHH---------------HHHHHhhh---------------------------
Confidence 4445677777778999887 6887432211 11111000
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhccc
Q 017802 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (365)
Q Consensus 172 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d 251 (365)
+++. +...+ ..... +....|...+..+|.++|
T Consensus 191 --------------~~~~-~~~~~-----------------------------~~~~~----~~~~~~~~~l~~al~~~d 222 (312)
T PRK02534 191 --------------FGDT-YLSDE-----------------------------EDFEQ----RRQALRSGPLLQAISAKD 222 (312)
T ss_pred --------------cccc-cccCc-----------------------------ccccc----cccccchhHHHHhhhccC
Confidence 0000 00000 00000 111123344567888887
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHH-hCCCcEEEEccccCcceEEEEEcCC-cHHHHHHHHH
Q 017802 252 RLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTGAGWGGCVVALVKES-IDSQFILNLK 329 (365)
Q Consensus 252 ~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~-~~Ga~GakisGaG~GG~vi~L~~~~-~~~~~~~~l~ 329 (365)
++.+++.| |+.++....-..|+++++++.++ +.|++|+.|||+| +|+++|++.. .++++.+.++
T Consensus 223 ---------~~~~~~~~---~n~l~~~~~~~~~~i~~~~~~l~~~~Ga~~~~lSGsG--ptv~~l~~~~~~a~~~~~~l~ 288 (312)
T PRK02534 223 ---------PPPIAQLL---HNDLEKVVLPEYPQVAKLLELLSSLPGCLGTMMSGSG--PTCFALFESQEQAEQALEQVR 288 (312)
T ss_pred ---------HHHHHHhh---hCchHHHhHhcChHHHHHHHHHHhccCCCeeEEECcC--cceEEEeCCHHHHHHHHHHHH
Confidence 88888766 55566553336899999999888 8999999999777 9999999863 6777888887
Q ss_pred HHHHhcccCCCcccCCCCcceEEEeeCCC-ceeec
Q 017802 330 EQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 363 (365)
Q Consensus 330 ~~y~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 363 (365)
+.+... ...++++++.+ |++|.
T Consensus 289 ~~~~~~------------~~~v~i~~~~n~G~~v~ 311 (312)
T PRK02534 289 EAFADP------------GLDAWVCQFISHGIQLE 311 (312)
T ss_pred HHhccC------------ceEEEEEEecCCCceec
Confidence 654321 23688999987 99763
No 29
>PRK01123 shikimate kinase; Provisional
Probab=99.86 E-value=6.5e-20 Score=174.03 Aligned_cols=99 Identities=16% Similarity=0.060 Sum_probs=80.9
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhh-hC-CCCCchhHHHHHhhcCCeEEEe
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF-IG-TQSGGMDQAISIMAKSGFAELI 90 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~-~g-~~~G~~D~~~~~~Gg~~~~~~i 90 (365)
+||++++.++||.++|||||||+++|++.+++++++.++++++++++|.++|+. .+ ..++.+|++++++||+ .+.
T Consensus 74 ~~~~i~i~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~GG~---~~~ 150 (282)
T PRK01123 74 YGATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFDDACASYFGGV---TVT 150 (282)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccCchhHHHHHHhCCE---EEE
Confidence 589999999999999999999999999999999999999999999999999983 33 3466688999999994 344
Q ss_pred ecCCC-ceEeeecCCCcEEEEEecCCc
Q 017802 91 DFNPI-RTTDVQLPAGGTFVVAHSLAE 116 (365)
Q Consensus 91 ~~~~~-~~~~~~~p~~~~~vli~s~~~ 116 (365)
+.... .+.+++ .++.+++++|+.+
T Consensus 151 ~~~~~~~~~~~~--~~~~~vv~~p~~~ 175 (282)
T PRK01123 151 DNREMKLLKRDE--VELDVLVLIPPEG 175 (282)
T ss_pred cCCCceEEEEec--CCcEEEEEECCCC
Confidence 43332 223333 3589999999864
No 30
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.86 E-value=7.9e-21 Score=180.65 Aligned_cols=188 Identities=15% Similarity=0.167 Sum_probs=139.2
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+|++++|.++||.++|||||||+++|++.+++++++.++++++++++|.++| .|..++++||. .+.+.
T Consensus 83 ~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g---------~dv~~~~~Gg~---~~~~~ 150 (286)
T PRK00128 83 QGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIG---------SDVPFCIYGGT---ALATG 150 (286)
T ss_pred CCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhC---------CCCCeEeeCCe---EEEec
Confidence 5899999999999999999999999999999999999999999999999986 47888899984 34554
Q ss_pred CCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcC
Q 017802 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (365)
Q Consensus 93 ~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~~~ 172 (365)
+...+.+++.++++.+++++|+...+|... | + .++
T Consensus 151 ~g~~~~~~~~~~~~~~vv~~p~~~~~T~~~----~-----------~------------------~~~------------ 185 (286)
T PRK00128 151 RGEKITPLKSPPSCWVVLAKPDIGVSTKDV----Y-----------K------------------NLD------------ 185 (286)
T ss_pred CCcccccCCCCCCcEEEEEcCCCCCCHHHH----H-----------h------------------cCc------------
Confidence 444556666556788999998863221100 0 0 000
Q ss_pred CCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhcccc
Q 017802 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLR 252 (365)
Q Consensus 173 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~ 252 (365)
. ++.. ...+..+..++.++|
T Consensus 186 ---------------~---------------------------------------~~~~-----~~~~~~~~~~l~~~d- 205 (286)
T PRK00128 186 ---------------L---------------------------------------DKIS-----HPDTEKLIEAIEEGD- 205 (286)
T ss_pred ---------------c---------------------------------------cccc-----CcchHHHHHHHhcCC-
Confidence 0 0000 001334556778887
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhhcCC-CChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCC-cHHHHHHHHHH
Q 017802 253 LLCSEEDKLKKLGDLMNDSHHSCSVLYEC-SCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKE 330 (365)
Q Consensus 253 ~~~~~~~~~~~lg~lm~~sh~~lr~~~~~-s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~-~~~~~~~~l~~ 330 (365)
++.++++|++..+.. .+ .+|+++++++.+++.|++|++|||+| ||+++|++.+ .++++.+.+++
T Consensus 206 --------~~~~~~~~~n~l~~~----~~~~~p~l~~l~~~~~~~Ga~g~~lSGsG--~sv~~l~~~~~~~~~i~~~l~~ 271 (286)
T PRK00128 206 --------YQGICANMGNVLENV----TLKKYPEIAKIKERMLKFGADGALMSGSG--PTVFGLFDDESRAQRIYNGLKG 271 (286)
T ss_pred --------HHHHHHhccCcHHHH----HHhhChHHHHHHHHHHhcCCCeeEEcccC--ccEEEEeCCHHHHHHHHHHhHh
Confidence 999999886432222 33 48999999999999999999999888 9999999763 57777777765
Q ss_pred H
Q 017802 331 Q 331 (365)
Q Consensus 331 ~ 331 (365)
.
T Consensus 272 ~ 272 (286)
T PRK00128 272 F 272 (286)
T ss_pred h
Confidence 3
No 31
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.84 E-value=6e-19 Score=170.21 Aligned_cols=222 Identities=18% Similarity=0.192 Sum_probs=154.0
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+|+++.|.++||.++|||||||+++|.+.|++++++.+++.+++++++.+.| .++ .|.+++++||+ .++.
T Consensus 81 ~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge-----~s~-~~va~~~~GG~----vv~~ 150 (324)
T TIGR00144 81 EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGG-----TSG-IGVASFEDGGF----IVDG 150 (324)
T ss_pred CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCC-----CCc-cceeeeeeCCE----EEEC
Confidence 5899999999999999999999999999999999999999999999998866 232 56778999994 2331
Q ss_pred ----C---------------CCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhh
Q 017802 93 ----N---------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAI 153 (365)
Q Consensus 93 ----~---------------~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~ 153 (365)
. +..+.++++| +|+|+++.|..+ .++. .|..+ +|.+.
T Consensus 151 G~~~~~~~~~~~~~~~~~~~~~~~~r~~~p-~~~~vlviP~~~-~t~~-------are~~------~lp~~--------- 206 (324)
T TIGR00144 151 GHSSKEKSDFLPSSASSAKPAPVIARYDFP-DWNIILAIPEID-SVSG-------RREVN------IFQKY--------- 206 (324)
T ss_pred CcccccccccCcccccCCCCCCeEEecCCC-CcEEEEEecCCC-CCCc-------HHHHH------HHHhc---------
Confidence 1 1225566777 999999999864 2211 12111 12111
Q ss_pred hccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHH
Q 017802 154 SKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHV 233 (365)
Q Consensus 154 ~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 233 (365)
.+++.+++ .+..++
T Consensus 207 -----------------------------------~~i~~~dv-------------------------------~~~~~~ 220 (324)
T TIGR00144 207 -----------------------------------CPVPLRDV-------------------------------ERICHL 220 (324)
T ss_pred -----------------------------------CCCCHHHH-------------------------------HHHHHH
Confidence 01111111 111111
Q ss_pred HHHhhhHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhhhhc--CCCChHHHHHHHHHHhCCCcEEEEccccCcce
Q 017802 234 YSEAKRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLY--ECSCPELEELVNVCRNNGALGARLTGAGWGGC 311 (365)
Q Consensus 234 ~~E~~rv~~~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~--~~s~peld~lv~~a~~~Ga~GakisGaG~GG~ 311 (365)
-+.++..++.++| ++.|++.|++.+..-.+.. +.-.|.+..+++.+.+ ++|+-|||+| ++
T Consensus 221 -----~l~~l~~al~~~d---------~~~~~~~l~d~~~~~f~~~~~~~r~~li~~~~~~l~~--a~g~~iSGsG--PT 282 (324)
T TIGR00144 221 -----ILMKMMPAVVEGD---------LDAFGESVNEIQGLGFKKIERELQDPLIKRIIDSMIS--APGAGMSSFG--PT 282 (324)
T ss_pred -----HHHHHHHHHHhcC---------HHHHHHHHHHHHhhcchhhhccccCHHHHHHHHHHHh--ccCceecCCC--Ce
Confidence 1234678999888 9999999987554432211 2347777777777764 4899999555 99
Q ss_pred EEEEEcCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeec
Q 017802 312 VVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 363 (365)
Q Consensus 312 vi~L~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 363 (365)
+++|++.+ ++++.+++++.|...+ ..+.++++++++ |++|.
T Consensus 283 v~al~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~~n~Ga~v~ 324 (324)
T TIGR00144 283 VYAVTDEK-PGNIAGAVADIFGPYG----------VYGRIIVTKARNRGAFII 324 (324)
T ss_pred EEEEecCc-hHHHHHHHHHHhhhCC----------CceEEEEEccCCCCCEeC
Confidence 99999754 7778888887665433 477899999986 99873
No 32
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.80 E-value=2.4e-18 Score=164.08 Aligned_cols=94 Identities=15% Similarity=0.097 Sum_probs=79.0
Q ss_pred CCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEee
Q 017802 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (365)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~ 91 (365)
.+|+++.|.++||.++|||||||.++|++.+++++++.++++++++++|.++| .|...+++||. .+..
T Consensus 84 ~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg---------~Dv~~~~~gg~---~~~~ 151 (293)
T TIGR00154 84 LDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLG---------ADVPFFVSGHA---AFAT 151 (293)
T ss_pred CCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcceEEECCe---EEEE
Confidence 35899999999999999999999999999999999999999999999999886 58888899984 3444
Q ss_pred cCCCceEeeecCCCcEEEEEecCCcc
Q 017802 92 FNPIRTTDVQLPAGGTFVVAHSLAES 117 (365)
Q Consensus 92 ~~~~~~~~~~~p~~~~~vli~s~~~~ 117 (365)
.+...+.+++.++++.+++++|+.+.
T Consensus 152 g~ge~~~~l~~~~~~~~vl~~p~~~~ 177 (293)
T TIGR00154 152 GVGEIITPFEDPPEKWVVIAKPHVSI 177 (293)
T ss_pred ecCcEEEECCCCCCcEEEEEcCCCCc
Confidence 44444566665567889999998753
No 33
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.80 E-value=7.2e-18 Score=154.93 Aligned_cols=227 Identities=19% Similarity=0.207 Sum_probs=164.6
Q ss_pred CCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEee
Q 017802 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (365)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~ 91 (365)
..|+++.|.+.+|.+.||||.++++.|++.++++++++.++..|+|....+ |.-+| .-.++.-+||+ .+|
T Consensus 69 ~~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgR-----G~tSg-iGv~afe~GGF----IVD 138 (312)
T COG1907 69 GEGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGR-----GGTSG-IGVYAFEYGGF----IVD 138 (312)
T ss_pred cCceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHcc-----CCccc-eeEEEEEECCE----EEE
Confidence 368999999999999999999999999999999999999999999987766 33343 33455667774 444
Q ss_pred cC------C--C--ceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchh
Q 017802 92 FN------P--I--RTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSD 161 (365)
Q Consensus 92 ~~------~--~--~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~ 161 (365)
.. | . .+.+..||.||.|+|+.|..++ . .+..| |- .++.+.
T Consensus 139 GGh~~~f~ps~~sP~I~R~dfPedW~~VlaIP~~~r---g----~~~~~--E~----~if~~~----------------- 188 (312)
T COG1907 139 GGHSFGFLPSSASPLIFRLDFPEDWRFVLAIPEVER---G----VSGRR--EV----DIFKKY----------------- 188 (312)
T ss_pred CCcccCcccCCCCceeeeecCCCceEEEEEecCCCc---c----ccchH--HH----HHHHhc-----------------
Confidence 31 1 1 2567788999999999998753 1 11122 11 111111
Q ss_pred hhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHH
Q 017802 162 VEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVH 241 (365)
Q Consensus 162 v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~ 241 (365)
.|...+ ..+++.|++ ..
T Consensus 189 ---------------------------~p~p~~-------------------------------~~~~ls~~v-----Lm 205 (312)
T COG1907 189 ---------------------------CPVPLE-------------------------------EVGELSHRV-----LM 205 (312)
T ss_pred ---------------------------CCCCHH-------------------------------HHHHHHHHH-----HH
Confidence 000001 112333322 34
Q ss_pred HHHHHHhcccccccchHHHHHHHHHHHHHHHHHh---hhhc--CCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEE
Q 017802 242 AFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSC---SVLY--ECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 316 (365)
Q Consensus 242 ~~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~l---r~~~--~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~ 316 (365)
++..++.++| ++.||+.|++-|... .+.. ...|+.+..+++.+.++ +|||.+| .||+++++|+
T Consensus 206 ~mmPavvE~D---------ie~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~~-a~~agqS--SwGPtvY~i~ 273 (312)
T COG1907 206 KMMPAVVERD---------IESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVEA-AYGAGQS--SWGPTVYGIV 273 (312)
T ss_pred HHhHHHHhhC---------HHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHHh-ccccccc--ccCCEEEEec
Confidence 5678888887 999999999999987 4432 46789999999999998 8999998 8999999999
Q ss_pred cCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeec
Q 017802 317 KESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 363 (365)
Q Consensus 317 ~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 363 (365)
++.....+...+.+.+.+.+ ....+++|+|.+ ||.|.
T Consensus 274 d~~~~~~~~~~~~~~~~~~g----------~~gev~vT~~rN~Ga~i~ 311 (312)
T COG1907 274 DSREAGSVVRKLIDILLEEG----------IGGEVFVTKARNRGAEIL 311 (312)
T ss_pred cccccchHHHHHHHHHHhcC----------CceEEEEeccCCCCceec
Confidence 88777766666666665544 367899999987 99875
No 34
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.77 E-value=4.2e-18 Score=161.45 Aligned_cols=94 Identities=11% Similarity=0.053 Sum_probs=78.4
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+|++++|.++||.++|||||||.++|++.+++++++.+++++++.++|..+| .|...+++||. .+...
T Consensus 84 ~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~G---------~Dv~~~l~gg~---~~~~g 151 (280)
T PRK14614 84 VGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKLG---------ADVPFFIFKKT---ALAEG 151 (280)
T ss_pred CceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcceeeeCCc---EEEEE
Confidence 5899999999999999999999999999999999999999999999998765 58878888884 34444
Q ss_pred CCCceEeeecCCCcEEEEEecCCcch
Q 017802 93 NPIRTTDVQLPAGGTFVVAHSLAESL 118 (365)
Q Consensus 93 ~~~~~~~~~~p~~~~~vli~s~~~~~ 118 (365)
++..+.+++.++++.+++++|+...+
T Consensus 152 ~ge~~~~l~~~~~~~ivl~~p~~~~s 177 (280)
T PRK14614 152 IGDKLTAVEGVPPLWVVLVNPGLHVS 177 (280)
T ss_pred cCceeEECCCCCCcEEEEECCCCCCC
Confidence 44456666655678899999987543
No 35
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.76 E-value=1.2e-17 Score=158.92 Aligned_cols=193 Identities=13% Similarity=0.110 Sum_probs=131.4
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHH-hhcCCeEEEee
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISI-MAKSGFAELID 91 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~-~Gg~~~~~~i~ 91 (365)
+|++++|.++||+++|||||||.++|++.+++++++.+++.++++++|.++| .|..+++ +||. .+..
T Consensus 82 ~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig---------~Dvp~~l~~gg~---~~~~ 149 (287)
T PRK14616 82 KGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLG---------ADVPYFLEMKGL---AYAT 149 (287)
T ss_pred CCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcceEeccCCc---EEEE
Confidence 6899999999999999999999999999999999999999999999999987 4633333 3553 2333
Q ss_pred cCCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 017802 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (365)
Q Consensus 92 ~~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~~ 171 (365)
.....+++++.+..+.+++++|+.+-+|.. +.+.+.+..
T Consensus 150 g~g~~~~~~~~~~~~~~vvv~P~~~vsT~~---------------a~~~l~~~~-------------------------- 188 (287)
T PRK14616 150 GIGDELEDLQLTLPFHIVTVFPEEHISTVW---------------AYKNFYRRF-------------------------- 188 (287)
T ss_pred EcCceeEECCcCCCcEEEEECCCCCcCHHH---------------HHHHhhhhc--------------------------
Confidence 333345555544457899999987433211 111110000
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhc-c
Q 017802 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS-N 250 (365)
Q Consensus 172 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~-~ 250 (365)
.. ...++..+..++.. +
T Consensus 189 --------------------~~------------------------------------------~~~~~~~l~~~l~~~~ 206 (287)
T PRK14616 189 --------------------ER------------------------------------------ERPDLKTLVRRLCLDG 206 (287)
T ss_pred --------------------cc------------------------------------------CCchHHHHHHHHhcCC
Confidence 00 00011112223332 2
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcC-CcHHHHHHHHH
Q 017802 251 LRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLK 329 (365)
Q Consensus 251 d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~-~~~~~~~~~l~ 329 (365)
+ ++.++.++|+- +..+.. ..|+++++.+.+++.|++|+.|||+| +++++|+++ ..++++.+.++
T Consensus 207 ~---------~~l~~~~~nD~-e~~~~~---l~p~l~~v~~~~~~~Galg~~lSGSG--ptv~al~~~~~~a~~i~~~l~ 271 (287)
T PRK14616 207 D---------TSVLPAFENDF-ESAVFD---HYPAVRKVKDDLLEAGSFFASLSGSG--SAVFGLFENEADAEAAAEMMR 271 (287)
T ss_pred H---------HHHHHHhcCcc-HHHHHH---hChHHHHHHHHHHhCCCCeEEEeccc--ccceEEeCCHHHHHHHHHHhH
Confidence 2 45555555544 333322 47999999999999999999999998 899999987 46888888888
Q ss_pred HHHHhc
Q 017802 330 EQFYQS 335 (365)
Q Consensus 330 ~~y~~~ 335 (365)
+.|..+
T Consensus 272 ~~~~~~ 277 (287)
T PRK14616 272 ARYRTN 277 (287)
T ss_pred HhCccc
Confidence 777543
No 36
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.75 E-value=2.5e-17 Score=156.80 Aligned_cols=93 Identities=10% Similarity=0.031 Sum_probs=78.9
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+|++++|.++||+++|||||||.++|++.+++++++.++++++++++|.++| .|...+++||. .+...
T Consensus 89 ~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig---------~dv~~~l~gg~---~~~~g 156 (290)
T PRK14608 89 PPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLG---------ADVPVCLDSRP---LIMRG 156 (290)
T ss_pred CceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcchhhcCCe---EEEEe
Confidence 6899999999999999999999999999999999999999999999999975 58888999984 34444
Q ss_pred CCCceEeeecCCCcEEEEEecCCcc
Q 017802 93 NPIRTTDVQLPAGGTFVVAHSLAES 117 (365)
Q Consensus 93 ~~~~~~~~~~p~~~~~vli~s~~~~ 117 (365)
++..+.+++.++++.+++++|+.+.
T Consensus 157 ~g~~~~~l~~~~~~~~vv~~p~~~~ 181 (290)
T PRK14608 157 IGEELTPLPGLPSLPAVLVNPGVPV 181 (290)
T ss_pred cCCEeEECCCCCCcEEEEECCCCCc
Confidence 4445666654457889999998753
No 37
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.73 E-value=7.6e-17 Score=153.93 Aligned_cols=93 Identities=15% Similarity=0.014 Sum_probs=75.5
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+|++++|.++||.++|||||||.++|++.+++++++.+++.++++++|.++| .|...+++||. .+...
T Consensus 87 ~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~g---------aDvPffl~gg~---a~~~G 154 (296)
T PRK14615 87 PPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAGVG---------ADVPFFLHNVP---CRATG 154 (296)
T ss_pred CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC---------CCCeeeccCCC---EEEEe
Confidence 6899999999999999999999999999999999999999999999999987 46555556653 23444
Q ss_pred CCCceEeeec-CCCcEEEEEecCCcc
Q 017802 93 NPIRTTDVQL-PAGGTFVVAHSLAES 117 (365)
Q Consensus 93 ~~~~~~~~~~-p~~~~~vli~s~~~~ 117 (365)
....++++++ ++++.+++++|+++-
T Consensus 155 ~Ge~~~~l~~~~~~~~~vl~~P~~~v 180 (296)
T PRK14615 155 IGEILTPVALGLSGWTLVLVCPEVQV 180 (296)
T ss_pred eEeEEEECCCCCCCcEEEEECCCCCc
Confidence 4445666654 346789999998853
No 38
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.73 E-value=3.2e-17 Score=155.13 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=69.9
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+|++++|.++||+++|||||||.++|++.+++++++.+++ +.+++..+| .|...+++||. .+...
T Consensus 82 ~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l~---l~~ia~~~g---------~dv~~~~~GG~---~~~~g 146 (276)
T PRK14612 82 GGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPVD---LPALALTLG---------ADVPFFLLGGA---AEARG 146 (276)
T ss_pred CCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCChH---HHHHHHHhC---------CCcCeeeeCCe---EEEEe
Confidence 5899999999999999999999999999999999997665 455555544 48888899984 34444
Q ss_pred CCCceEeeecCCCcEEEEEecCCcc
Q 017802 93 NPIRTTDVQLPAGGTFVVAHSLAES 117 (365)
Q Consensus 93 ~~~~~~~~~~p~~~~~vli~s~~~~ 117 (365)
++..+.+++.| ++.+++++|+.+.
T Consensus 147 ~g~~~~~l~~~-~~~~vv~~P~~~~ 170 (276)
T PRK14612 147 VGERLTPLELP-PVPLVLVNPGVAV 170 (276)
T ss_pred cCccceEcCCC-CcEEEEECCCCCC
Confidence 44456666644 7889999998753
No 39
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.73 E-value=1.6e-16 Score=150.33 Aligned_cols=93 Identities=12% Similarity=0.070 Sum_probs=77.4
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+|+++++.++||+++|||||||.++|++.+++++++.+++.+++.++|.++| .|...+++|| +.+...
T Consensus 79 ~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~---------~D~~~~~~Gg---~~~~~~ 146 (275)
T PRK14611 79 INYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSIS---------ADAPFFLKGG---FALGRG 146 (275)
T ss_pred CCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------CCCCeeecCC---eEEEec
Confidence 5899999999999999999999999999999999999999999999999987 4766677888 345554
Q ss_pred CCCceEeeecCCCcEEEEEecCCcc
Q 017802 93 NPIRTTDVQLPAGGTFVVAHSLAES 117 (365)
Q Consensus 93 ~~~~~~~~~~p~~~~~vli~s~~~~ 117 (365)
.+..+.+++.+.++.+++++|+.+.
T Consensus 147 ~g~~~~~~~~~~~~~~vv~~p~~~~ 171 (275)
T PRK14611 147 IGDKLEFLEKPISREITLVYPNIKS 171 (275)
T ss_pred cCceeEECCcCCCcEEEEEeCCCCC
Confidence 4445556655556789999998854
No 40
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.73 E-value=1.9e-16 Score=151.28 Aligned_cols=198 Identities=15% Similarity=0.092 Sum_probs=131.6
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+|++++|.++||+++|||||||.+++++.+++..+++ ...+++.++|.++| .|..+++.|+ ..+.+.
T Consensus 92 ~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l-~~~e~L~~lA~~lG---------aDvP~~l~G~---~a~~~g 158 (297)
T PRK14613 92 PGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNF-FTSDEMQVFAKEIG---------SDVPFFLGEG---HAFVTG 158 (297)
T ss_pred CCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHhC---------CccchhhcCC---eEEEec
Confidence 6899999999999999999999998888888775554 23467777999875 5855555554 455565
Q ss_pred CCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcC
Q 017802 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (365)
Q Consensus 93 ~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~~~ 172 (365)
.+..+.+++.|+.+. +++.|+++-+|.. +.+.+.+...
T Consensus 159 ~Ge~~~~l~~~~~~~-vlv~P~~~vsT~~---------------a~~~l~~~~~-------------------------- 196 (297)
T PRK14613 159 KGEIMEEIEVHKGQG-ILALTPQVMNTGE---------------MYALLKKPLQ-------------------------- 196 (297)
T ss_pred CCcEEEEcCCCCCeE-EEEECCCCcChHH---------------HHHhcchhhc--------------------------
Confidence 665677777665654 6778887432211 1111100000
Q ss_pred CCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhcccc
Q 017802 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLR 252 (365)
Q Consensus 173 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~ 252 (365)
.+. + .. . + +.+...+..++.++|
T Consensus 197 ----------------~~~--~----------~~-------------------~-------~--~~~~~~~~~al~~~~- 219 (297)
T PRK14613 197 ----------------ESA--S----------QK-------------------N-------G--NTLSEDLISSLKVGD- 219 (297)
T ss_pred ----------------ccc--c----------cc-------------------c-------c--cccHHHHHHHHHcCC-
Confidence 000 0 00 0 0 012223456777777
Q ss_pred cccchHHHHHHHHHH-HHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcC-CcHHHHHHHHHH
Q 017802 253 LLCSEEDKLKKLGDL-MNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKE 330 (365)
Q Consensus 253 ~~~~~~~~~~~lg~l-m~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~-~~~~~~~~~l~~ 330 (365)
++.+... +|+. +..+.. -.|+++++++.+.+.|++|++|||+| +|+++|++. +.++++.+.+++
T Consensus 220 --------~~~l~~~l~ndl-e~~~~~---l~P~~~~i~~~~~~~Ga~~~~mSGSG--ptvf~l~~~~~~a~~~~~~l~~ 285 (297)
T PRK14613 220 --------WVSLQGRLENDF-EPVAFQ---LHPELGVLKDKFLEFGSSYCSLTGSG--SSMYGLVQGLEIQEELLPRLRQ 285 (297)
T ss_pred --------HHHHHHHhcccc-hHHHHH---hCcHHHHHHHHHHHcCCCEEEEEccc--cceEEEeCCHHHHHHHHHHHHH
Confidence 7777554 4665 333322 38999999999999999999999996 999999987 578888888988
Q ss_pred HHHhcc
Q 017802 331 QFYQSR 336 (365)
Q Consensus 331 ~y~~~~ 336 (365)
.|.+..
T Consensus 286 ~~~~~~ 291 (297)
T PRK14613 286 EFSNLT 291 (297)
T ss_pred hhccce
Confidence 776544
No 41
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.71 E-value=9.6e-17 Score=151.16 Aligned_cols=93 Identities=13% Similarity=0.056 Sum_probs=77.4
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+|+++++.++||.++|||||||.++|++.+++++++.+++.++++++|.+++ +|...+++||. .+...
T Consensus 81 ~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~iG---------aDvpffl~g~~---a~~~G 148 (269)
T PRK14609 81 PPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATLG---------ADCAFFIRNKP---VYATG 148 (269)
T ss_pred CCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCceEEccCCC---EEEEE
Confidence 5899999999999999999999999999999999999999999999999874 68877777763 34444
Q ss_pred CCCceEeeecC-CCcEEEEEecCCcc
Q 017802 93 NPIRTTDVQLP-AGGTFVVAHSLAES 117 (365)
Q Consensus 93 ~~~~~~~~~~p-~~~~~vli~s~~~~ 117 (365)
++..+.+++.+ +++.+++++|++..
T Consensus 149 ~Ge~l~~l~~~~~~~~~vlv~P~~~~ 174 (269)
T PRK14609 149 IGDIFSPIDLSLSGYYIALVKPDIHV 174 (269)
T ss_pred eCCeeEECCCCCCCCEEEEECCCCCC
Confidence 45556676543 57889999998743
No 42
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.56 E-value=5.5e-14 Score=132.59 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=73.4
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+|+++.|.++||+++|||||||.++|++.+++++++.++++++++++|.++| .|...++.|+ ..+...
T Consensus 86 ~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~la~~ig---------aDvp~~l~g~---~~~~~g 153 (271)
T PRK00343 86 LGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAELGLKLG---------ADVPVFVRGH---AAFAEG 153 (271)
T ss_pred CCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCceEEecCC---cEEEEe
Confidence 5899999999999999999999999999999999999999999999999876 5644444444 334444
Q ss_pred CCCceEeeecCCCcEEEEEecCCcc
Q 017802 93 NPIRTTDVQLPAGGTFVVAHSLAES 117 (365)
Q Consensus 93 ~~~~~~~~~~p~~~~~vli~s~~~~ 117 (365)
.+..+.+++.| ...+++++|+.+.
T Consensus 154 ~g~~~~~l~~~-~~~~vl~~p~~~~ 177 (271)
T PRK00343 154 IGEILTPVDLP-EKWYLVVKPGVHI 177 (271)
T ss_pred cCCEEEECCCC-CcEEEEEeCCCCc
Confidence 45556666644 4567899998743
No 43
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.55 E-value=1.3e-13 Score=130.16 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=77.8
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+|+++.+.++||+++|||||||.++|++.+++++++.+++.+++.++|.++| .|...++.||. .+...
T Consensus 79 ~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lG---------aDvPffl~~g~---a~~~G 146 (288)
T PRK00650 79 TPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIG---------MDTPFFFSTGS---ALGVG 146 (288)
T ss_pred CCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CcchhhhcCce---EEEEe
Confidence 5899999999999999999999999999999999999999999999999987 58888777763 34454
Q ss_pred CCCceEeeecCCCcEEEEEecCCc
Q 017802 93 NPIRTTDVQLPAGGTFVVAHSLAE 116 (365)
Q Consensus 93 ~~~~~~~~~~p~~~~~vli~s~~~ 116 (365)
....+++++.++++.++++.|++.
T Consensus 147 ~Ge~l~~~~~~~~~~~vlv~P~~~ 170 (288)
T PRK00650 147 RGEKIIALEESVSDRYVLYFSSEG 170 (288)
T ss_pred cCCEEEECcCCCCceEEEEeCCCC
Confidence 555677776556678899988763
No 44
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.55 E-value=2.1e-14 Score=106.68 Aligned_cols=67 Identities=36% Similarity=0.484 Sum_probs=62.1
Q ss_pred EEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhc
Q 017802 16 NHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAK 83 (365)
Q Consensus 16 ~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg 83 (365)
+++++++||.++|||||||+++|++.+++++++.++++++++++++++|+..|.++| +|.++++|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~g~~~g-~d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYIGKPSG-IDDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHCSSSHS-HHHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcCCCCh-hhHHHHHhCc
Confidence 589999999999999999999999999999999999999999999999984488866 7779999997
No 45
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=99.52 E-value=3e-12 Score=122.47 Aligned_cols=204 Identities=11% Similarity=0.087 Sum_probs=132.4
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEee-
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID- 91 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~- 91 (365)
.++++.+.++||.++|||||||..+|++.|+++++++++++.+++++|.+.| |..|+ +++||+ +.+..
T Consensus 84 ~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gs---Gsa~~------s~~GG~--v~~~~g 152 (305)
T TIGR01240 84 EKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGS---GSACR------SLFGGY--VAWEKG 152 (305)
T ss_pred CceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc---CCeee------eeecCe--EEEEcC
Confidence 4799999999999999999999999999999999999999999999999977 43333 789995 32322
Q ss_pred --cCCCceEeeecCCCc----EEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhh
Q 017802 92 --FNPIRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGL 165 (365)
Q Consensus 92 --~~~~~~~~~~~p~~~----~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~ 165 (365)
..+....+++.|..| .++++.+..++...++ .. +|
T Consensus 153 ~~~~~s~a~~i~~~~~~~~~~~~v~vv~~~~k~vsSt---------~g-------------------------m~----- 193 (305)
T TIGR01240 153 KDDHSSAAVQVADDSDWPQXAMCVLVVNDIKKDVSSR---------QG-------------------------MQ----- 193 (305)
T ss_pred CCCCCeeEEECCCccccccceEEEEEcCCCCCCCCCH---------HH-------------------------HH-----
Confidence 122334555544344 4556655543210011 00 01
Q ss_pred hhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHH
Q 017802 166 CVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKD 245 (365)
Q Consensus 166 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~ 245 (365)
+.++..++ ...|+.+. ..++.++++
T Consensus 194 ------------------~~~~ts~~----------------------------------~~~~v~~~---~~~l~~~~~ 218 (305)
T TIGR01240 194 ------------------LTVATSEL----------------------------------FKEWIEHV---VPDFEVXRK 218 (305)
T ss_pred ------------------HhhhcCcc----------------------------------HHHHHHHH---HHHHHHHHH
Confidence 00111100 11222221 124777889
Q ss_pred HHhcccccccchHHHHHHHHHHHHHHHHHhhhhc-------CCCChHHHHHHHHH---HhCCCcEEEEccccCcceEEEE
Q 017802 246 TVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLY-------ECSCPELEELVNVC---RNNGALGARLTGAGWGGCVVAL 315 (365)
Q Consensus 246 al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~-------~~s~peld~lv~~a---~~~Ga~GakisGaG~GG~vi~L 315 (365)
+|.++| ++.||++...+-..+.... -.-+|+.-.+++.. ++.|...+-..=|| +.+..|
T Consensus 219 ai~~~D---------~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~~g~~~~~T~DAG--pNv~vl 287 (305)
T TIGR01240 219 AIKTKD---------FATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQGGTICYFTMDAG--PNVKVL 287 (305)
T ss_pred HHHhcc---------HHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHhCCCcEEEEEcCC--CCEEEE
Confidence 999998 9999998887644443221 11244444444444 44576666777777 999999
Q ss_pred EcCCcHHHHHHHHHHHH
Q 017802 316 VKESIDSQFILNLKEQF 332 (365)
Q Consensus 316 ~~~~~~~~~~~~l~~~y 332 (365)
+..+..+.+.+.+++.|
T Consensus 288 ~~~~~~~~v~~~~~~~~ 304 (305)
T TIGR01240 288 YLAENLSKLFEFIYKLF 304 (305)
T ss_pred EccccHHHHHHHHHHhc
Confidence 99999999998887654
No 46
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=99.50 E-value=2.6e-13 Score=127.12 Aligned_cols=93 Identities=15% Similarity=0.140 Sum_probs=81.6
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
.|++|+++++||+++|||+.||.+++++.+|+++++.+++.+||+.++.++. .|...+++|| ..+...
T Consensus 84 ~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~LG---------aDVPffl~g~---tA~a~G 151 (289)
T COG1947 84 GGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRLG---------ADVPFFLSGG---TAFAEG 151 (289)
T ss_pred CCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------CCcCeeeeCC---ceEEEE
Confidence 5899999999999999999999999999999999999999999999999974 8998899988 447777
Q ss_pred CCCceEeeecCCCcEEEEEecCCcc
Q 017802 93 NPIRTTDVQLPAGGTFVVAHSLAES 117 (365)
Q Consensus 93 ~~~~~~~~~~p~~~~~vli~s~~~~ 117 (365)
+..++++++-++...+++++|++.-
T Consensus 152 ~GE~l~~~~~~~~~~~vl~~P~v~v 176 (289)
T COG1947 152 RGEKLEPLEDPPEKWYVLAKPGVGV 176 (289)
T ss_pred ccceeeECCCCCCceEEEEeCCCCC
Confidence 7778888875557778999998743
No 47
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.49 E-value=5.7e-12 Score=115.21 Aligned_cols=99 Identities=22% Similarity=0.178 Sum_probs=80.3
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCC--CCchhHHHHHhhcCCeEEEe
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQ--SGGMDQAISIMAKSGFAELI 90 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~--~G~~D~~~~~~Gg~~~~~~i 90 (365)
.++++.++|+||.++||.||||++.|++.|+.++.|.++++.+++.+..++-.-.|.. +-.-|..++++|| +.+.
T Consensus 69 ~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~~~~~i~~l~a~~S~~aGvSvTGA~DDa~AS~~GG---~~iT 145 (278)
T COG1685 69 LGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAGVSVTGAFDDACASYLGG---IVIT 145 (278)
T ss_pred cceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHhcCceEeccchHHHHHHhCC---eEEe
Confidence 3899999999999999999999999999999999999999999999988887644432 3346777899999 6678
Q ss_pred ecCCCceEee-ecCCCcEEEEEecCC
Q 017802 91 DFNPIRTTDV-QLPAGGTFVVAHSLA 115 (365)
Q Consensus 91 ~~~~~~~~~~-~~p~~~~~vli~s~~ 115 (365)
|.+..++.+. +.| ++..++.-|+.
T Consensus 146 DN~~m~Ilrr~~~~-~~~vlI~~p~~ 170 (278)
T COG1685 146 DNRKMRILRRLDLP-ELTVLILAPGE 170 (278)
T ss_pred cchhheehhccccC-CceEEEEecCC
Confidence 8877655444 444 67777777764
No 48
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.48 E-value=8.9e-14 Score=107.69 Aligned_cols=82 Identities=32% Similarity=0.515 Sum_probs=71.0
Q ss_pred HHHHHhcccccccchHHHHHHHHHHHHHHHHH-hhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcC-Cc
Q 017802 243 FKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHS-CSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SI 320 (365)
Q Consensus 243 ~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~-lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~-~~ 320 (365)
++++|.++| ++.|+++|+++|.. ........+|+++.+++.+++.|++|++|||+|||||+++|+++ +.
T Consensus 1 m~~al~~~d---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~~~~ 71 (85)
T PF08544_consen 1 MIKALAEGD---------LELLGELMNENQENEPENYREVLTPEIDELKEAAEENGALGAKMSGSGGGPTVFALCKDEDD 71 (85)
T ss_dssp HHHHHHTTC---------HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTESEEEEETTSSSSEEEEEESSHHH
T ss_pred CHHHHHCcC---------HHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHHCCCCceecCCCCCCCeEEEEECCHHH
Confidence 457888888 99999999999985 11123678999999999999999999999999999999999944 68
Q ss_pred HHHHHHHHHHHHH
Q 017802 321 DSQFILNLKEQFY 333 (365)
Q Consensus 321 ~~~~~~~l~~~y~ 333 (365)
++++.++|++.|+
T Consensus 72 ~~~v~~~l~~~~~ 84 (85)
T PF08544_consen 72 AERVAEALREHYK 84 (85)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhCC
Confidence 9999999988775
No 49
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.48 E-value=6.7e-13 Score=126.04 Aligned_cols=89 Identities=10% Similarity=-0.017 Sum_probs=73.7
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+|+++++.++||.++|||||||.++|++.+++++++ ++.+++.+++.++. .|...+++|| ..+...
T Consensus 83 ~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~lG---------aDvPffl~g~---~a~~~G 148 (283)
T PRK14610 83 TNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALSVG---------SDVPACLDSK---TLFVRG 148 (283)
T ss_pred CCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhC---------CCCcEEEECC---eEEEEe
Confidence 589999999999999999999999999999999996 69999999998853 8999999987 347777
Q ss_pred CCCceEeeec-CCCcEEEEEec-CC
Q 017802 93 NPIRTTDVQL-PAGGTFVVAHS-LA 115 (365)
Q Consensus 93 ~~~~~~~~~~-p~~~~~vli~s-~~ 115 (365)
+..++++++. +....++++.| ++
T Consensus 149 ~Ge~l~~l~~~~~~~~~vl~~p~~~ 173 (283)
T PRK14610 149 IGEDILLLPDLSLPTYVVLVAPKGK 173 (283)
T ss_pred cccEEEECcccCCCCeEEEEECCCC
Confidence 7777777753 22344788877 44
No 50
>PRK05905 hypothetical protein; Provisional
Probab=99.29 E-value=3.9e-11 Score=111.89 Aligned_cols=90 Identities=14% Similarity=0.069 Sum_probs=76.6
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhh-cCCeEEEee
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMA-KSGFAELID 91 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~G-g~~~~~~i~ 91 (365)
+|+++.+.++||.++|||||||.++|++.+++++++ ++.+++.+++.++. .|...+++| +. .+..
T Consensus 85 ~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~lG---------ADVPFfl~g~~~---a~~~ 150 (258)
T PRK05905 85 NHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKLG---------SDIPFFLSGYKT---AYIS 150 (258)
T ss_pred CCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHhC---------CCcceEEeCCcc---EEEE
Confidence 689999999999999999999999999999999997 68999999998874 888888888 63 4666
Q ss_pred cCCCceEeeecCCCcEEEEEecCCc
Q 017802 92 FNPIRTTDVQLPAGGTFVVAHSLAE 116 (365)
Q Consensus 92 ~~~~~~~~~~~p~~~~~vli~s~~~ 116 (365)
.+...+++++.|+...++|++|++.
T Consensus 151 G~GE~l~pl~~~~~~~~vlv~P~~~ 175 (258)
T PRK05905 151 DYGSQVEDLIGQFKLTYKVIFMNVN 175 (258)
T ss_pred eeCceeEECCCCCCceEEEECCCCC
Confidence 6666788886554566899999874
No 51
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=2.5e-10 Score=112.00 Aligned_cols=211 Identities=21% Similarity=0.298 Sum_probs=138.4
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHH----HHHHHhhhhhCCCCCchhHHHHHhhcCCeEE
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA----QLTCECEQFIGTQSGGMDQAISIMAKSGFAE 88 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~----~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~ 88 (365)
.||+++.+|++|-|+|||.||-++...++|+....+.-...+.+. .-..+.|+++.+.+|++||...++-|..
T Consensus 690 ~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~GIK--- 766 (948)
T KOG4644|consen 690 CGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQCGAIMEGIK--- 766 (948)
T ss_pred CceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHhHHHHHHHHHHHHHHhhcCCchhhhccchhhhhh---
Confidence 689999999999999999999999999999999888765555544 3345688888888999999998888843
Q ss_pred EeecC-----CCceEeeecCC------CcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccc
Q 017802 89 LIDFN-----PIRTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVK 157 (365)
Q Consensus 89 ~i~~~-----~~~~~~~~~p~------~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~ 157 (365)
.-.++ .+.++++.+|. +-++++++++.. ++|..+|
T Consensus 767 ~gr~rael~~~ie~eeiTipe~f~ekL~dhLLLVYTGKT------------------RLAkNLL---------------- 812 (948)
T KOG4644|consen 767 KGRCRAELNHGIEHEEITIPEEFREKLEDHLLLVYTGKT------------------RLAKNLL---------------- 812 (948)
T ss_pred hccchhhccCCceeeeecCCHHHHHHHhhcEEEEEeCch------------------HHHHHHH----------------
Confidence 22222 24566666664 235666666631 1222222
Q ss_pred cchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHh
Q 017802 158 TLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEA 237 (365)
Q Consensus 158 ~L~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~ 237 (365)
+| .++.++...+ ...+.+..+ .
T Consensus 813 --Qd-------------------ViRn~far~~----------------------------------a~~Q~ah~l-~-- 834 (948)
T KOG4644|consen 813 --QD-------------------VIRNFFARCK----------------------------------ATKQKAHKL-A-- 834 (948)
T ss_pred --HH-------------------HHHHHHHhhH----------------------------------HHHHHHHHH-H--
Confidence 11 1112211110 001122222 1
Q ss_pred hhHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhhhh-cCCCChHHHHHHHHHHh--CCCcEEEEccccCcceEEE
Q 017802 238 KRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRN--NGALGARLTGAGWGGCVVA 314 (365)
Q Consensus 238 ~rv~~~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~-~~~s~peld~lv~~a~~--~Ga~GakisGaG~GG~vi~ 314 (365)
..+.++...++++. ++.+|+++...|+..+-. .++-.+...+|.+.... .| -.+...|||+||+++.
T Consensus 835 ~~tdecAegf~kGs---------l~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLaph~hg-esgw~AGAGGGGFiYL 904 (948)
T KOG4644|consen 835 EATDECAEGFEKGS---------LELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAPHKHG-ESGWAAGAGGGGFIYL 904 (948)
T ss_pred HHHHHHHHHHhcCc---------HHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhcccccc-ccchhccCCCCcEEEE
Confidence 23567778889888 999999999888876544 26667777788776643 23 3456889999999999
Q ss_pred EEcCCcHHHHHHHH
Q 017802 315 LVKESIDSQFILNL 328 (365)
Q Consensus 315 L~~~~~~~~~~~~l 328 (365)
+.+...-.+.++++
T Consensus 905 l~kEpqqkeaiEa~ 918 (948)
T KOG4644|consen 905 LIKEPQQKEAIEAF 918 (948)
T ss_pred EecCCCCHHHHHHh
Confidence 99876544444333
No 52
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=99.07 E-value=9.4e-10 Score=100.05 Aligned_cols=225 Identities=20% Similarity=0.232 Sum_probs=146.9
Q ss_pred eEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhh--------hCCC---------------C
Q 017802 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF--------IGTQ---------------S 71 (365)
Q Consensus 15 ~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~--------~g~~---------------~ 71 (365)
-++++.+-||.+.|+|||++..++.+...++..++.+++..+...+..+|+. +|.- +
T Consensus 95 Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~~~~ 174 (355)
T KOG1537|consen 95 TKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEAKVS 174 (355)
T ss_pred eeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhhhhc
Confidence 4577888999999999999999999988888887777766555555444420 0100 1
Q ss_pred Cc-hhHH-HHHhhcCCeEEEeecCCCce-Eeeec--CCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhC
Q 017802 72 GG-MDQA-ISIMAKSGFAELIDFNPIRT-TDVQL--PAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLG 146 (365)
Q Consensus 72 G~-~D~~-~~~~Gg~~~~~~i~~~~~~~-~~~~~--p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~ 146 (365)
|. .|+. ....||+ ++....-|... +++.+ .++++|+++.|.++..+..
T Consensus 175 ~~~ad~ilp~~~gg~--~li~~lpP~dlg~~~r~pw~~~lk~i~viP~Fel~T~k------------------------- 227 (355)
T KOG1537|consen 175 GYHADNILPAIMGGF--VLIRNLPPLDLGKPLRFPWDKDLKFILVIPDFELPTKK------------------------- 227 (355)
T ss_pred CCCHHHhcccccCCe--eeecCCCcccccccccCCCCccceEEEEeccccccchh-------------------------
Confidence 11 3443 4667774 22223333333 33344 4578999998887533211
Q ss_pred CCchhhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHH
Q 017802 147 MKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKL 226 (365)
Q Consensus 147 ~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (365)
+|.+ ++.. |
T Consensus 228 ------------~R~v-----------------------LPt~-y----------------------------------- 236 (355)
T KOG1537|consen 228 ------------MRAV-----------------------LPTE-Y----------------------------------- 236 (355)
T ss_pred ------------hhhh-----------------------cCcc-c-----------------------------------
Confidence 1111 1110 1
Q ss_pred HHHHhHHHHHhhhHHHHHHHHhcccccccchHHHHHHHHHHHHH-HHHHhhhhcCCCChHHHHHHHHHHhC---CCcEEE
Q 017802 227 HQRAAHVYSEAKRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMND-SHHSCSVLYECSCPELEELVNVCRNN---GALGAR 302 (365)
Q Consensus 227 ~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~~~~~lg~lm~~-sh~~lr~~~~~s~peld~lv~~a~~~---Ga~Gak 302 (365)
.+..| +...+|...+..|+..+. .+......+|.+ -|+.+|.- -.|.++.+...+... |++|..
T Consensus 237 -p~~d~-V~NlqrlA~LttAl~~~p-------~n~~L~y~~m~DkvhqPyRa~---LIPGl~~il~~~~p~t~pGl~Gic 304 (355)
T KOG1537|consen 237 -PMVDH-VWNLQRLAALTTALLEGP-------DNVMLGYALMSDKVHQPYRAP---LIPGLEAILKAALPATYPGLFGIC 304 (355)
T ss_pred -cceee-eecHHHHHHHHHHHhcCC-------CchhhhhhhhhccccCccccc---cCccHHHHHHhhCcccCCceeeEE
Confidence 11111 233345666667777652 125566677776 68888864 678999999988875 999999
Q ss_pred EccccCcceEEEEEcCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCC-Cceee
Q 017802 303 LTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPS-SGAAK 362 (365)
Q Consensus 303 isGaG~GG~vi~L~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v 362 (365)
+|||| ++++++.. +.-+++-++|-+.|.+.+. .|.|-..+|. +|+.|
T Consensus 305 lSGAG--PT~lAlat-enf~eI~~~mv~~F~K~G~----------kcs~~~l~pa~Dga~v 352 (355)
T KOG1537|consen 305 LSGAG--PTALALAT-ENFQEIGEKMVEAFWKVGH----------KCSVASLKPALDGAGV 352 (355)
T ss_pred ecCCC--CeeEEEec-CcHHHHHHHHHHHHHhhCc----------eeeeEeeccccCCcce
Confidence 99998 99999996 6788899999999988764 7778888875 56654
No 53
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.05 E-value=9.2e-09 Score=93.38 Aligned_cols=181 Identities=22% Similarity=0.207 Sum_probs=119.6
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
.|..+.+.|+||.|.||+||+|..+|++.|+..++|..++..+|+++|..+|.- |- .+|-+ +..+|.
T Consensus 82 ~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iEPt--------Ds--iiF~~---~tlFd~ 148 (293)
T COG4542 82 TGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIEPT--------DS--IIFDK---ATLFDQ 148 (293)
T ss_pred CCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcCCc--------cc--eeccc---ceeehh
Confidence 579999999999999999999999999999999999999999999999999931 21 12333 334454
Q ss_pred CCCce-EeeecCCCcEEEEEecCCcchhhhhcccchhh-HHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 017802 93 NPIRT-TDVQLPAGGTFVVAHSLAESLKAITAASNYNN-RVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (365)
Q Consensus 93 ~~~~~-~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~-r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~ 170 (365)
+...+ +-..-+|.+.+++..++. +..+ -+|+. ++-|..+
T Consensus 149 r~g~~~~~~g~~PpL~ilv~e~~~---~v~T--~~y~q~~r~e~~~---------------------------------- 189 (293)
T COG4542 149 REGRVIEFLGEMPPLHILVFEGKG---TVET--VDYNQPPRGEKLL---------------------------------- 189 (293)
T ss_pred ccchHHHhcCCCCceEEEEEcCCC---ceee--eeccCCchhhhhh----------------------------------
Confidence 44222 122223357777777654 1222 23432 1111000
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhcc
Q 017802 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (365)
Q Consensus 171 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~ 250 (365)
++. .+ +..+ +..+..|+..+
T Consensus 190 -----------------------~~~--------~e--------------------~~~l---------~~~v~~A~~~~ 209 (293)
T COG4542 190 -----------------------APL--------AE--------------------LGNL---------INLVEKALKVG 209 (293)
T ss_pred -----------------------hhH--------HH--------------------HHHH---------HHHHHHHHccC
Confidence 000 00 0111 12234677878
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCC
Q 017802 251 LRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 319 (365)
Q Consensus 251 d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~ 319 (365)
| ...+|+.-.-|-..-.+. +.-|.+++|.+++.+.+++|--..-+| +|++|.-+.
T Consensus 210 ~---------~~~lG~AAT~SAv~~Q~~--LPK~~~~~lL~l~e~~~~~Gv~VAHSG---tmlGli~D~ 264 (293)
T COG4542 210 D---------PKLLGEAATLSAVKNQDR--LPKPGLNELLRLVEETCAIGVIVAHSG---TMLGLIYDR 264 (293)
T ss_pred C---------HHHHHHHHHHHHHhhccc--cCchhHHHHHHHHHHhcccceEEeccC---ceEEeeecc
Confidence 7 889998887765554443 577899999999999888888887775 888887554
No 54
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.99 E-value=1.5e-09 Score=101.45 Aligned_cols=92 Identities=11% Similarity=0.023 Sum_probs=77.7
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhh-cCCeEEEee
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMA-KSGFAELID 91 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~G-g~~~~~~i~ 91 (365)
+|+++++.++||.++|||||||.++|++.+++++++.+++.+++.++|.++. .|...+++| + ..+..
T Consensus 85 ~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~lG---------aDvPffl~~~~---~a~~~ 152 (257)
T PRK04181 85 KKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKVG---------ADVAFFISGYK---SANVS 152 (257)
T ss_pred CceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCccEEecCCc---eEEEE
Confidence 5899999999999999999999999999999999999999999999998874 888888888 5 34666
Q ss_pred cCCCceEeeecCCCcEEEEEecCCcc
Q 017802 92 FNPIRTTDVQLPAGGTFVVAHSLAES 117 (365)
Q Consensus 92 ~~~~~~~~~~~p~~~~~vli~s~~~~ 117 (365)
.+...+++++.++. .+++++|++.-
T Consensus 153 G~Ge~l~~l~~~~~-~~~lv~P~~~v 177 (257)
T PRK04181 153 GIGEIVEEFEEEIL-NLEIFTPNIFC 177 (257)
T ss_pred eeCCeeEECCCCCC-eEEEECCCCCc
Confidence 66667787753323 38899998753
No 55
>PLN02407 diphosphomevalonate decarboxylase
Probab=98.97 E-value=1.7e-07 Score=90.11 Aligned_cols=60 Identities=23% Similarity=0.212 Sum_probs=52.1
Q ss_pred EEEEEe--cCCCCCCCChHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHhhhhhCCCCCchhHHHHHhhcC
Q 017802 16 NHINSL--FFNLGSGLSSSTAFVCSSTVALMAAFGVEVP-KKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 84 (365)
Q Consensus 16 ~i~i~s--~iP~g~GLGSSaAl~va~~~al~~~~~~~l~-~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~ 84 (365)
++.|.| ++|.++|||||||..+|++.|+..+++++++ ..++..+|++ | +| .|.- +++||+
T Consensus 105 ~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr~-----G--SG-Sa~r-S~~Gg~ 167 (343)
T PLN02407 105 HVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIARQ-----G--SG-SACR-SLYGGF 167 (343)
T ss_pred cEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHhc-----c--Ch-HHHH-HhhCCe
Confidence 567777 9999999999999999999999999999999 9999999985 4 33 5555 899994
No 56
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=98.88 E-value=4.9e-07 Score=83.20 Aligned_cols=86 Identities=24% Similarity=0.219 Sum_probs=59.7
Q ss_pred CCCCChHHHHHHHHH--HHHHHHhCCCCCH-HHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEeecCCCce----
Q 017802 26 GSGLSSSTAFVCSST--VALMAAFGVEVPK-KEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRT---- 97 (365)
Q Consensus 26 g~GLGSSaAl~va~~--~al~~~~~~~l~~-~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~i~~~~~~~---- 97 (365)
..||||||++++.++ .++....+.+++. .++.++|+.+-. ..|..+++-|..++++|+ +.|-.|.|.-.
T Consensus 107 KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSGfDiaaA~fGs---iiyrRF~p~li~~l~ 183 (337)
T COG3890 107 KTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSGFDIAAAIFGS---IIYRRFEPGLIPKLR 183 (337)
T ss_pred cCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCccchhhHhhhcc---eEEeecCcchhhhhH
Confidence 689999999999988 3444435556665 788899988876 567766679999999999 56666766322
Q ss_pred --EeeecCCCcEEEEEecCC
Q 017802 98 --TDVQLPAGGTFVVAHSLA 115 (365)
Q Consensus 98 --~~~~~p~~~~~vli~s~~ 115 (365)
..+.+. ++.++..+...
T Consensus 184 qig~~nfg-~y~LmmGd~a~ 202 (337)
T COG3890 184 QIGAVNFG-DYYLMMGDQAI 202 (337)
T ss_pred hhCccccc-Ceeeeeccccc
Confidence 222222 56666665543
No 57
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=98.74 E-value=2.6e-06 Score=81.38 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=53.6
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcC
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 84 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~ 84 (365)
..+++...++.|-++||+||||..+|+++|++.++++.++..++.++|+.+- .++ .-+++||+
T Consensus 89 ~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~gS-----GSa----~RS~~Gg~ 151 (329)
T COG3407 89 FKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLGS-----GSA----SRSIFGGF 151 (329)
T ss_pred ceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHhc-----cch----hhhhcCCe
Confidence 4577888889999999999999999999999999999999999999998743 221 13689995
No 58
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=98.65 E-value=1.1e-05 Score=75.55 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=51.3
Q ss_pred ceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcC
Q 017802 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 84 (365)
Q Consensus 14 g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~ 84 (365)
.+++.-.++.|..+||.||||=-+|++.+|.++++++.+++++-.+|++.. |.. .=++|||+
T Consensus 105 ~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~GS---GSA------CRSl~GG~ 166 (395)
T KOG2833|consen 105 KLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQGS---GSA------CRSLYGGF 166 (395)
T ss_pred eEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhccC---chh------hhhhhcce
Confidence 355566679999999999999999999999999999999999999998832 222 23699993
No 59
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=98.64 E-value=3.5e-06 Score=77.90 Aligned_cols=94 Identities=16% Similarity=0.092 Sum_probs=73.9
Q ss_pred ceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeecC
Q 017802 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFN 93 (365)
Q Consensus 14 g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~~ 93 (365)
++.+.+.+++|.|+|+|-|+|.+.+.+.+++..++++ .++.++.|+.+|-..| +|+.|..+..+||. ++.+.-.
T Consensus 74 ~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~~g--tGLGDVvAq~~GGl--ViR~~pG 147 (283)
T COG1829 74 GVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEVENG--TGLGDVVAQYTGGL--VIRVKPG 147 (283)
T ss_pred CcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHcC--CCchHHHHHhcCcE--EEEecCC
Confidence 3679999999999999999999999999999988765 8889999999996444 56789999999994 3333322
Q ss_pred -C--CceEeeecCCCcEEEEEecC
Q 017802 94 -P--IRTTDVQLPAGGTFVVAHSL 114 (365)
Q Consensus 94 -~--~~~~~~~~p~~~~~vli~s~ 114 (365)
| ..++.++.|+ ++++.+..+
T Consensus 148 ~Pg~~~vd~Ip~~~-~~V~~~~~g 170 (283)
T COG1829 148 GPGEGEVDRIPVPG-LRVITISLG 170 (283)
T ss_pred CCCeEEEEEeecCC-ceEEEEEcc
Confidence 2 3677787775 776666544
No 60
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=98.41 E-value=6.3e-06 Score=77.66 Aligned_cols=67 Identities=24% Similarity=0.375 Sum_probs=48.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCC----------CCC--HHH-HHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEee
Q 017802 26 GSGLSSSTAFVCSSTVALMAAFGV----------EVP--KKE-IAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (365)
Q Consensus 26 g~GLGSSaAl~va~~~al~~~~~~----------~l~--~~e-l~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~i~ 91 (365)
..|||||||++.+++.++..-++. +++ ..+ +-++|+.+-- ..|+.+++.|..+++||. ..|..
T Consensus 152 KTGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS---~rYrR 228 (459)
T KOG4519|consen 152 KTGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGS---QRYRR 228 (459)
T ss_pred ccCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhccc---eeeee
Confidence 689999999999999887777753 122 333 4466655553 568888889999999998 45666
Q ss_pred cCCC
Q 017802 92 FNPI 95 (365)
Q Consensus 92 ~~~~ 95 (365)
|.|.
T Consensus 229 F~P~ 232 (459)
T KOG4519|consen 229 FSPE 232 (459)
T ss_pred CCHH
Confidence 6663
No 61
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=64.92 E-value=15 Score=26.62 Aligned_cols=49 Identities=24% Similarity=0.205 Sum_probs=40.7
Q ss_pred CCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCCcHHHHHHHHHH
Q 017802 280 ECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 330 (365)
Q Consensus 280 ~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~~~~~~~~~l~~ 330 (365)
.++...+..|.+++.+.|.--.++|... +..+.-++.+.++++.+.|++
T Consensus 20 ~i~~~~l~~la~ia~~yg~~~irlT~~Q--~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 20 RISAEQLRALAEIAEKYGDGEIRLTTRQ--NLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp EEEHHHHHHHHHHHHHHSTSEEEEETTS--CEEEEEEEGGGHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHhCCCeEEECCCC--eEEEeCCCHHHHHHHHHHHHc
Confidence 3567788999999999987778999554 788887888999999988865
No 62
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=42.58 E-value=35 Score=32.89 Aligned_cols=47 Identities=13% Similarity=0.190 Sum_probs=28.9
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCCcHHHHHHHHH
Q 017802 281 CSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 329 (365)
Q Consensus 281 ~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~~~~~~~~~l~ 329 (365)
+|++.|..+++.|.+.|.-..++|+-+ |..+...++++++++.+.|+
T Consensus 42 l~~e~Lr~i~diAekyG~G~i~iT~rq--g~ei~~i~~e~~~~v~~~L~ 88 (317)
T COG2221 42 LSAETLRKIADIAEKYGDGLIHITSRQ--GLEIPGISPEDADDVVEELR 88 (317)
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEecC--ceEeccCCHHHHHHHHHHHH
Confidence 455566666666666665556666444 56665555566666666665
No 63
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=29.61 E-value=1.5e+02 Score=27.88 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhhhh--cCCCChHHHHHHHHHHh-CCCcEEEEccccCcceEEE
Q 017802 261 LKKLGDLMNDSHHSCSVL--YECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVA 314 (365)
Q Consensus 261 ~~~lg~lm~~sh~~lr~~--~~~s~peld~lv~~a~~-~Ga~GakisGaG~GG~vi~ 314 (365)
+...|++.....+.+.+. .|+|+.|||.+++.... .|++-+....-|+.+.+..
T Consensus 14 ~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ci 70 (255)
T COG0024 14 MREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCI 70 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEe
Confidence 444555555544443333 48999999999998865 6999999987776555544
No 64
>COG1356 tfx Transcriptional regulator [DNA replication, recombination and repair]
Probab=27.86 E-value=2.4e+02 Score=23.57 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=29.5
Q ss_pred hcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhc
Q 017802 187 RKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~ 249 (365)
+++|++.+++.+.++..-.++ -.+.+|+...+..+.++..+++-|.+
T Consensus 20 RekG~tQ~eIA~~L~TTraNv----------------SaIEkrA~enIekarnTL~l~~~i~s 66 (143)
T COG1356 20 REKGLTQSEIARILKTTRANV----------------SAIEKRALENIEKARNTLLLWEQINS 66 (143)
T ss_pred hhccccHHHHHHHHccchhhH----------------HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456788889988877421111 12456777777777777766666554
No 65
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=23.34 E-value=59 Score=30.42 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=19.7
Q ss_pred CChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEc
Q 017802 282 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALVK 317 (365)
Q Consensus 282 s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~ 317 (365)
-+|++.++.+ ..+.|||+| .|+++|-+
T Consensus 229 ~~P~i~~~~~-------~~~~mSGSG--stvF~l~~ 255 (257)
T PRK04181 229 LYPALKDYLG-------EDWFFSGSG--SSFFRVKR 255 (257)
T ss_pred hCHHHHHHhc-------CCcEEeCcC--cceEEEee
Confidence 3677777743 466799888 89998753
No 66
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=21.11 E-value=3.9e+02 Score=25.19 Aligned_cols=68 Identities=13% Similarity=0.241 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEE--EEccccCcceEEEEEcCCcHHHHHHHHHHHHHhcc
Q 017802 261 LKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGA--RLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSR 336 (365)
Q Consensus 261 ~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~Ga--kisGaG~GG~vi~L~~~~~~~~~~~~l~~~y~~~~ 336 (365)
+..|.+.++..-.+. ++.+.-+.+...+.| +|- -+.||.||=-.+-....+.+.++++.|.+.+.+..
T Consensus 24 l~~f~~~~~~aks~i-------sed~~i~~~~~~~~~-~g~~~t~~ga~ggv~~~p~~~~~~~~~~~~~l~~~l~~~~ 93 (268)
T TIGR01743 24 LNFFSERYESAKSSI-------SEDIVIIKETFEKFG-IGKLLTVPGAAGGVKYIPKMSQAEAEEFVEELCQSLSEPE 93 (268)
T ss_pred HHHHHHHhccccchh-------hhhHHHHHHHHHhcC-CceEEEeCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHCC
Confidence 566666655443333 345667777777777 564 55666654322222323468889999988887654
Done!