Query 017802
Match_columns 365
No_of_seqs 159 out of 1426
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 05:11:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 1.6E-59 5.4E-64 474.6 28.7 346 11-364 144-519 (520)
2 2a2c_A N-acetylgalactosamine k 100.0 7.5E-52 2.6E-56 418.2 35.0 327 12-364 147-476 (478)
3 1pie_A Galactokinase; galactos 100.0 2.2E-43 7.4E-48 351.0 33.9 275 13-364 140-417 (419)
4 1wuu_A Galactokinase; galactos 100.0 3.8E-42 1.3E-46 339.9 29.8 268 12-365 129-399 (399)
5 2cz9_A Probable galactokinase; 100.0 8.9E-41 3E-45 323.8 31.1 265 12-362 85-350 (350)
6 3k85_A D-glycero-D-manno-hepto 100.0 4.6E-37 1.6E-41 299.3 14.1 227 3-330 83-321 (357)
7 1kvk_A MK, mevalonate kinase; 100.0 7.1E-34 2.4E-38 280.3 27.9 238 12-364 126-381 (395)
8 2hfs_A Mevalonate kinase, puta 100.0 1E-30 3.5E-35 251.5 28.1 233 13-362 96-332 (332)
9 3gon_A Phosphomevalonate kinas 100.0 4.1E-31 1.4E-35 253.7 24.1 209 11-330 83-318 (335)
10 3k17_A LIN0012 protein; protei 100.0 1E-30 3.6E-35 255.1 26.1 210 12-330 96-341 (365)
11 4hac_A Mevalonate kinase; GHMP 100.0 7.9E-30 2.7E-34 244.8 31.6 225 11-362 94-320 (321)
12 2pg9_A Phosphomevalonate kinas 100.0 6.5E-31 2.2E-35 254.0 22.8 209 11-329 85-319 (337)
13 2x7i_A Mevalonate kinase; tran 100.0 2.5E-30 8.7E-35 246.2 24.1 219 5-332 77-297 (308)
14 2oi2_A Mevalonate kinase; enzy 100.0 1.2E-28 4.1E-33 232.5 24.6 211 12-333 72-284 (292)
15 1kkh_A Mevalonate kinase; mixe 100.0 5E-28 1.7E-32 231.3 22.5 202 12-330 97-305 (317)
16 1h72_C HK, homoserine kinase; 100.0 7.1E-28 2.4E-32 227.9 21.8 219 13-363 75-296 (296)
17 3hul_A HSK, HK, homoserine kin 99.9 7.8E-24 2.7E-28 201.1 22.6 218 11-364 68-290 (298)
18 3pyf_A 4-diphosphocytidyl-2-C- 99.9 4.3E-23 1.5E-27 196.7 21.3 213 13-364 87-301 (306)
19 2gs8_A Mevalonate pyrophosphat 99.9 9E-22 3.1E-26 188.1 22.5 215 13-362 91-317 (317)
20 3qt5_A Mevalonate diphosphate 99.9 4E-21 1.4E-25 185.0 21.8 222 13-364 93-332 (332)
21 1uek_A 4-(cytidine 5'-diphosph 99.8 4.2E-20 1.4E-24 173.1 13.2 88 13-116 75-162 (275)
22 2v8p_A 4-diphosphocytidyl-2-C- 99.8 6.7E-20 2.3E-24 171.5 11.4 92 13-116 80-171 (271)
23 1fi4_A Mevalonate 5-diphosphat 99.8 4.8E-17 1.7E-21 161.0 23.0 205 12-333 121-348 (416)
24 2ww4_A 4-diphosphocytidyl-2C-m 99.7 6.1E-18 2.1E-22 159.2 9.8 92 13-117 88-179 (283)
25 3lto_A Mevalonate diphosphate 99.7 5.2E-16 1.8E-20 148.1 23.0 201 13-333 91-309 (323)
26 2hke_A Diphosphomevalonate dec 99.7 1E-15 3.4E-20 149.9 24.7 204 12-333 95-319 (380)
27 3f0n_A Mevalonate pyrophosphat 99.6 1E-14 3.4E-19 142.5 20.9 233 13-363 122-396 (414)
28 3m05_A Uncharacterized protein 57.7 23 0.00079 27.8 6.0 54 283-336 15-73 (114)
29 2eg2_A Nitrogen regulatory pro 47.1 58 0.002 24.9 6.9 68 283-359 10-99 (112)
30 1vfj_A Nitrogen regulatory pro 44.6 53 0.0018 25.3 6.3 52 283-334 10-83 (116)
31 2j9c_A GLNK1, hypothetical nit 43.1 45 0.0015 25.9 5.7 53 282-334 11-85 (119)
32 3bzq_A Nitrogen regulatory pro 38.8 90 0.0031 23.8 6.8 68 283-359 12-101 (114)
33 2gw8_A PII signal transduction 35.7 94 0.0032 23.8 6.4 67 283-358 12-100 (114)
34 2ns1_B Nitrogen regulatory pro 35.0 1.3E+02 0.0045 23.0 7.2 69 282-359 13-103 (116)
35 3t9z_A GLNK3, nitrogen regulat 34.3 1E+02 0.0035 24.0 6.4 70 283-361 10-101 (118)
36 2o66_A PII protein; regulation 32.6 1.1E+02 0.0038 24.4 6.5 52 283-334 22-96 (135)
37 3ncq_A Nitrogen regulatory pro 31.9 97 0.0033 24.2 5.9 71 283-362 10-102 (119)
38 1hwu_A PII protein; herbaspiri 31.6 1.1E+02 0.0038 23.2 6.2 52 283-334 10-83 (112)
39 2cz4_A Hypothetical protein TT 22.4 1.2E+02 0.0043 23.5 4.9 53 282-334 33-99 (119)
40 4aff_A Nitrogen regulatory pro 21.0 2.8E+02 0.0097 21.2 7.7 71 283-362 10-102 (116)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=1.6e-59 Score=474.60 Aligned_cols=346 Identities=31% Similarity=0.490 Sum_probs=291.8
Q ss_pred cCCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeE
Q 017802 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 87 (365)
Q Consensus 11 ~~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~---~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~ 87 (365)
+.+||++.|.|+||.|+|| |||+++|++.|++.++ +.++++.+++++|+++|+++|.+||+|||+++++|+.+++
T Consensus 144 ~~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~ 221 (520)
T 3v2u_C 144 PLVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHA 221 (520)
T ss_dssp CCCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBE
T ss_pred CCCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeE
Confidence 4589999999999999999 9999999999999998 7789999999999999999999999999999999999999
Q ss_pred EEeecCC-CceEeeecCC----CcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchh----hhhcccc
Q 017802 88 ELIDFNP-IRTTDVQLPA----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQE----AISKVKT 158 (365)
Q Consensus 88 ~~i~~~~-~~~~~~~~p~----~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~----~~~~~~~ 158 (365)
+++||++ ++++++|+|+ ++.|+|+||++.++||.+++++||.||+||+.|+++|++++++.... .-....+
T Consensus 222 l~id~~~~l~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~~~~~s 301 (520)
T 3v2u_C 222 LYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGN 301 (520)
T ss_dssp EEEECSSSCEEEEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSSCTTCC
T ss_pred EEEEcCCCceeEEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHHHhhCCccccccccccccccc
Confidence 9999999 9999999987 79999999999888999999999999999999999999998764210 0011247
Q ss_pred chhhhhhhhh--------hhcC-----CCCCChhHHHHHhhhc--CCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhh
Q 017802 159 LSDVEGLCVA--------FACK-----NGSSDPVFAVKEFLRK--EPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 223 (365)
Q Consensus 159 L~~v~~~~~~--------~~~~-----~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (365)
|||+.+.++. |++. .+..+|.+.+.+.+.+ .+|+++++.+.++.+.+++.+.++..+++ +.+.
T Consensus 302 LRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~~~--~~~~ 379 (520)
T 3v2u_C 302 LRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPV--RFQV 379 (520)
T ss_dssp HHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSSCE--EESC
T ss_pred HHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhhcCChhhhhhhhcccccc--cccc
Confidence 9998765421 1110 0112344556666655 38999999998886555655555555443 3445
Q ss_pred HHHHHHHhHHHHHhhhHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEE
Q 017802 224 YKLHQRAAHVYSEAKRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARL 303 (365)
Q Consensus 224 ~~~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~Gaki 303 (365)
+.+++|++|+++|+.||.+++.+|++++ ..+.+++++.||+||+++|.+||++|++|||++|.|++++++.|++|+||
T Consensus 380 ~~l~~RA~HVv~E~~Rv~~~~~al~~~~--~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~~Ga~Garl 457 (520)
T 3v2u_C 380 LKLYQRAKHVYSESLRVLKALKMMTSAT--FHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRL 457 (520)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHTCSS--CCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--cccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhCCCCEEEE
Confidence 6789999999999999999999999874 11223469999999999999999999999999999999999999999999
Q ss_pred ccccCcceEEEEE---cCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeecc
Q 017802 304 TGAGWGGCVVALV---KESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 364 (365)
Q Consensus 304 sGaG~GG~vi~L~---~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 364 (365)
||||||||+|+|+ +++.+++++++|++.|+++.+ |.++++++.+.+|+++|+.||+|+.
T Consensus 458 TGaG~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~--~~~~~~~~~~~~~~~~p~~GA~i~~ 519 (520)
T 3v2u_C 458 TGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRY--PDLTDEELKDAIIVSKPALGTCLYE 519 (520)
T ss_dssp CSSCSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHC--TTCCHHHHHHHEEECCCCCCSEEEE
T ss_pred ecCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CccccccCCCeEEEecCCCceEEee
Confidence 9999999999999 778999999999999998887 5566666789999999999999974
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=7.5e-52 Score=418.20 Aligned_cols=327 Identities=40% Similarity=0.647 Sum_probs=279.2
Q ss_pred CCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEee
Q 017802 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (365)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~ 91 (365)
.+||++.|.|+||+++|||||||+++|++.|++.+++.++++++++++|.++|+++|.++|++||+++++|+.+.+++++
T Consensus 147 ~~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~~~g~~~g~~D~~a~~~G~~g~~~~i~ 226 (478)
T 2a2c_A 147 LTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIE 226 (478)
T ss_dssp CCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGTCCCCSHHHHHHHHCBTTBEEEEE
T ss_pred CCceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCCCccHHHHHHHhccCCcEEEEE
Confidence 57999999999999999999999999999999999999999999999999999988999999999999999777799999
Q ss_pred cCCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 017802 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (365)
Q Consensus 92 ~~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~~ 171 (365)
|++..+.++++|+++.|++++|+++.+|..+ +.||.|+.||+.|+++|+++.+++ |.+++.|+|+++.+
T Consensus 227 f~~~~~~~~~~~~~~~~vi~~s~~~~~t~~t--~~yn~r~~e~~~A~~~L~~~~~~~----~~~~~~l~d~~~~~----- 295 (478)
T 2a2c_A 227 FSPLRATDVKLPSGAVFVIANSCVEMNKAAT--SHFNIRVMECRLAAKLLAKYKSLQ----WDKVLRLEEVQAKL----- 295 (478)
T ss_dssp TTTTEEEEECCCTTEEEEEEECCCCCCGGGS--SHHHHHHHHHHHHHHHHHHHTTCC----TTTCCCHHHHHHHH-----
T ss_pred cCCCceEEecCCCCcEEEEEeCCCccccccc--chhHHHHHHHHHHHHHHHhhhccc----ccccchHHhhhhhh-----
Confidence 9998899999998899999999997654433 799999999999999999998765 34567899886542
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhc--
Q 017802 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS-- 249 (365)
Q Consensus 172 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~-- 249 (365)
.....+|++.|++++.+.+|+.+++.+.+|...+++.+.+++..+. ..+.+.+++|+.|++.|+.|+.+++++|.+
T Consensus 296 ~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~ra~h~~~e~~rv~~~~~aL~~~~ 373 (478)
T 2a2c_A 296 GISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQ--DVLIFKLYQRAKHVYSEAARVLQFKKICEEAP 373 (478)
T ss_dssp TCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGT--TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2334578899999998888988888888876666665555544331 223346789999999999999999999998
Q ss_pred -ccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCCcHHHHHHHH
Q 017802 250 -NLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNL 328 (365)
Q Consensus 250 -~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~~~~~~~~~l 328 (365)
+| ++.||++|+++|+++|++|++|+|++|+|++.+++.|++|+||||||||||+++|++++.+++++++|
T Consensus 374 ~~d---------~~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~~Ga~GarltGAG~GG~viaLv~~~~~~~~~~~l 444 (478)
T 2a2c_A 374 ENM---------VQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANV 444 (478)
T ss_dssp TTH---------HHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECTTCSSSEEEEEEEGGGHHHHHHHH
T ss_pred ccH---------HHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCCCcEEEeccCCCccEEEEEEcHHHHHHHHHHH
Confidence 66 99999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHHHHhcccCCCcccCCCCcceEEEeeCCCceeecc
Q 017802 329 KEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 364 (365)
Q Consensus 329 ~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 364 (365)
++.|+++.+....+ -.+.+|+++|++||+++.
T Consensus 445 ~~~y~~~~~~~~~~----~~~~~~~~~p~~Ga~~~~ 476 (478)
T 2a2c_A 445 HKAYYQRSDGSLAP----EKQSLFATKPGGGALVLL 476 (478)
T ss_dssp HHHHHC-------------CCSEEEECCBCCCEEEE
T ss_pred HHHHHHhcCccccC----CCCcEEEEcCCCCeEeec
Confidence 99998765200001 134789999999999874
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=2.2e-43 Score=350.96 Aligned_cols=275 Identities=27% Similarity=0.372 Sum_probs=236.2
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEee
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~i~ 91 (365)
+||++.+.++||.++|||||||+++|++.|++++++.++++++++++|.++|+ ++|.|+|++|++++++||.+.+++++
T Consensus 140 ~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d 219 (419)
T 1pie_A 140 KGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELD 219 (419)
T ss_dssp SCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEE
T ss_pred CCEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEee
Confidence 79999999999999999999999999999999999999999999999999997 88999999999999999988888999
Q ss_pred cCCCceEeeecC-CCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 017802 92 FNPIRTTDVQLP-AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (365)
Q Consensus 92 ~~~~~~~~~~~p-~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~ 170 (365)
+++..++++++| +++.|++++|+++ +++..+.||.|+.||+.+.+++.+..+ +..|+++..
T Consensus 220 ~~~~~~~~l~~~~~~~~~vl~~~~~~---~~t~~~~y~~r~~~~~~a~~~l~~~~~---------v~~l~~~~~------ 281 (419)
T 1pie_A 220 CNTLKYEMVPVELRDYDIVIMNTNKP---RALTESKYNERFAETREALKRMQTRLD---------IQSLGELSN------ 281 (419)
T ss_dssp TTTCCEEEEECCCTTEEEEEEECCCC---CCTTCHHHHHHHHHHHHHHHHHHHHCC---------CSSGGGCCH------
T ss_pred cCCCceEEeecCCCCcEEEEEECCCc---cccccchHHHHHHHHHHHHHHHhhccc---------cCchhhCCH------
Confidence 988888999987 6899999999985 566668999999999999999876422 123443221
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhcc
Q 017802 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (365)
Q Consensus 171 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~ 250 (365)
+++.+... .+ ..+..++|+.|++.|+.|+.+++++|.++
T Consensus 282 -----------------------~~~~~~~~------------~l------~~~~~~~~~~~~v~e~~r~~~~~~al~~~ 320 (419)
T 1pie_A 282 -----------------------EEFDANTD------------LI------GDETLIKRARHAVYENNRTKIAQKAFVAG 320 (419)
T ss_dssp -----------------------HHHHHTGG------------GT------CCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------HHHHHHHh------------hc------CcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11111100 00 01135678899999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhC-CCcEEEEccccCcceEEEEEcCCcHHHHHHHHH
Q 017802 251 LRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNN-GALGARLTGAGWGGCVVALVKESIDSQFILNLK 329 (365)
Q Consensus 251 d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~-Ga~GakisGaG~GG~vi~L~~~~~~~~~~~~l~ 329 (365)
| ++.||++|+++|.++++.|++++|++|+|++.+++. |++|+||||||||||+++|++++.+++++++|+
T Consensus 321 d---------~~~lg~lm~~~~~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~lsGaG~Gg~v~al~~~~~a~~~~~~l~ 391 (419)
T 1pie_A 321 N---------LTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVG 391 (419)
T ss_dssp C---------HHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHH
T ss_pred C---------HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcCCCceeeEecCCCCeEEEEEEchhhHHHHHHHHH
Confidence 8 999999999999999998899999999999999997 999999999999999999999888999999999
Q ss_pred HHHHhcccCCCcccCCCCcceEEEeeCCCceeecc
Q 017802 330 EQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 364 (365)
Q Consensus 330 ~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 364 (365)
+.|++.+. ..+.+|+++|+.|+++++
T Consensus 392 ~~~~~~~g---------~~~~~~~~~~~~Ga~v~~ 417 (419)
T 1pie_A 392 QVYEEVVG---------YPASFYVAQIGSGSTKLD 417 (419)
T ss_dssp HHHHHHHS---------SCCEEEECCBCCCSBCC-
T ss_pred HHHHHhcC---------CCCeEEEEcCCCCeeecc
Confidence 99987542 367899999999999875
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=3.8e-42 Score=339.95 Aligned_cols=268 Identities=29% Similarity=0.402 Sum_probs=228.1
Q ss_pred CCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEe
Q 017802 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (365)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~i 90 (365)
.+|+++.+.|+||.++|||||||+++|++.|++++++.++++++++++|.++|+ ++|.|+|++||+++++||.+.++++
T Consensus 129 ~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~ 208 (399)
T 1wuu_A 129 LPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLI 208 (399)
T ss_dssp CCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEE
T ss_pred CCCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEE
Confidence 479999999999999999999999999999999999999999999999999998 8899999999999999999888899
Q ss_pred ecCCCceEeeecCC-CcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 017802 91 DFNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (365)
Q Consensus 91 ~~~~~~~~~~~~p~-~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~ 169 (365)
++++..++++++|. ++.+++++|+.+ +++....||.|+.||+.++++|+.. .++++..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~vl~~~~~~---~~t~~~~y~~r~~~~~~a~~~l~~~-------------~l~~~~~----- 267 (399)
T 1wuu_A 209 DCRSLETSLVPLSDPKLAVLITNSNVR---HSLASSEYPVRRRQCEEVARALGKE-------------SLREVQL----- 267 (399)
T ss_dssp ETTTCCEEEEECCCSSEEEEEEEEEEE---C--CTTTHHHHHHHHHHHHHHTTCS-------------STTSCCH-----
T ss_pred ecCCCceEEecCCCCCeEEEEEECCCc---cccccccHHHHHHHHHHHHHHhChh-------------hhhcCCH-----
Confidence 99888888898874 899999999984 5666679999999999988777321 2332211
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhc
Q 017802 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (365)
Q Consensus 170 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~ 249 (365)
+++.+.. +.+ ....++|+.|++.|+.|+.+++++|.+
T Consensus 268 ------------------------~~~~~~~------------~~l-------~~~~~~r~~~~~~e~~r~~~~~~al~~ 304 (399)
T 1wuu_A 268 ------------------------EELEAAR------------DLV-------SKEGFRRARHVVGEIRRTAQAAAALRR 304 (399)
T ss_dssp ------------------------HHHTTGG------------GGS-------CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------------------------HHHHHHH------------hhc-------CHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 1111000 000 012467889999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHh-CCCcEEEEccccCcceEEEEEcCCcHHHHHHHH
Q 017802 250 NLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFILNL 328 (365)
Q Consensus 250 ~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~-~Ga~GakisGaG~GG~vi~L~~~~~~~~~~~~l 328 (365)
+| ++.||++|+++|+++++.+++++|++|++++.+++ .|++|+||||||||||+++|++++.+++++++|
T Consensus 305 ~d---------~~~lg~~m~~~h~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~l 375 (399)
T 1wuu_A 305 GD---------YRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHI 375 (399)
T ss_dssp TC---------HHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHH
T ss_pred CC---------HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCceEEeeecCCCccEEEEEEccchHHHHHHHH
Confidence 98 99999999999999998889999999999999999 799999999999999999999988889999999
Q ss_pred HHHHHhcccCCCcccCCCCcceEEEeeCCCceeeccC
Q 017802 329 KEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF 365 (365)
Q Consensus 329 ~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~~ 365 (365)
++.| + ..+.+|+++|+.|++++.|
T Consensus 376 ~~~~---~----------~~~~~~~~~~~~Ga~~~~~ 399 (399)
T 1wuu_A 376 QEHY---G----------GTATFYLSQAADGAKVLCL 399 (399)
T ss_dssp HHHC---S----------SCCEEEEECCCCCSEECCC
T ss_pred HHHh---C----------CCCcEEEEcCCCCeeeccC
Confidence 8877 2 2568999999999998754
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=100.00 E-value=8.9e-41 Score=323.76 Aligned_cols=265 Identities=23% Similarity=0.312 Sum_probs=226.0
Q ss_pred CCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEe
Q 017802 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (365)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~i 90 (365)
.+|+++++.++||.++|||||||+++|++.|++++++.++++++++++|.++|. ++|.|+|++|++++.+|+.+.++++
T Consensus 85 ~~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~la~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~ 164 (350)
T 2cz9_A 85 VGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFL 164 (350)
T ss_dssp CCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCTTEEEEE
T ss_pred CCCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhcCCCeEEEE
Confidence 378999999999999999999999999999999999999999999999999997 7899999999999999998889999
Q ss_pred ecCCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 017802 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (365)
Q Consensus 91 ~~~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~ 170 (365)
++++..++++++|+++.+++++|+.++ .+....|+.|+.+|+.+++.++. +.||++..
T Consensus 165 d~~~~~~~~l~~~~~~~~vl~~~~~~~---~~~t~~~~~r~~~~~~a~~~~~~-------------~~lr~~~~------ 222 (350)
T 2cz9_A 165 DTHTLDYEYIPFPKDVSILVFYTGVRR---ELASSEYAERKHIAEESLKILGK-------------GSSKEVRE------ 222 (350)
T ss_dssp ETTTCCEEEEECCTTEEEEEEECSCC-------CHHHHHHHHHHHHHHHHHTC-------------SCGGGCCG------
T ss_pred ecCCCcEEEEcCCCCcEEEEEECCCCC---ccccchHHHHHHHHHHHHHHhCh-------------hhhhhCCH------
Confidence 998888899999889999999999853 34445699999999999877742 23443211
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhcc
Q 017802 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (365)
Q Consensus 171 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~ 250 (365)
+++ . .++ ..++++..|.+.|..|+.++..+|.++
T Consensus 223 -----------------------~~~-~----~l~------------------~~~~~~~~~~~~~~~~~~~~~~al~~~ 256 (350)
T 2cz9_A 223 -----------------------GEL-S----KLP------------------PLHRKFFGYIVRENARVLEVRDALKEG 256 (350)
T ss_dssp -----------------------GGG-G----GSC------------------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -----------------------HHH-h----hCC------------------HHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 000 0 000 013456778888888999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCCcHHHHHHHHHH
Q 017802 251 LRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 330 (365)
Q Consensus 251 d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~~~~~~~~~l~~ 330 (365)
| ++.||++|+++|..+++.+++++|++|++++.+++.|++|+||||||||||+++|++++.++++.++|++
T Consensus 257 d---------~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~~Ga~ga~lsGaG~G~~v~~l~~~~~~~~~~~~l~~ 327 (350)
T 2cz9_A 257 N---------VEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAIALVDKEDAETIGEEILR 327 (350)
T ss_dssp C---------HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEEEGGGHHHHHHHHHH
T ss_pred C---------HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCCEEEEecCCCceEEEEEEchhhHHHHHHHHHH
Confidence 8 9999999999999999888999999999999999999999999999999999999998889999999999
Q ss_pred HHHhcccCCCcccCCCCcceEEEeeCCCceee
Q 017802 331 QFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 362 (365)
Q Consensus 331 ~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 362 (365)
.|++++. +.+.+|+++|+.|+++
T Consensus 328 ~~~~~~~---------~~~~~~~~~~~~Ga~~ 350 (350)
T 2cz9_A 328 EYLKRFP---------WKARHFIVEPSDGVGI 350 (350)
T ss_dssp HHHHHCC---------SCCEEEEECEECCSBC
T ss_pred HHHHhhC---------CCCcEEEecCCCCCCC
Confidence 9987632 4678999999999975
No 6
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.6e-37 Score=299.33 Aligned_cols=227 Identities=16% Similarity=0.224 Sum_probs=164.8
Q ss_pred chhHHHhhc----CCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHH
Q 017802 3 GETVVIITK----FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQA 77 (365)
Q Consensus 3 ~~~~~~~~~----~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~ 77 (365)
|++..+.+. .+||++.+.++||.++|||||||+++|++.|++++++.++++++++++|.++|+ ++|.|||.+||+
T Consensus 83 ~~~~~l~~~~~~~~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~G~~~G~~D~~ 162 (357)
T 3k85_A 83 GVYNRIIRDYRLEPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQY 162 (357)
T ss_dssp HHHHHHHHHTTCCCCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTCCCCCSHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHccCCCcHHHHH
Confidence 444455442 469999999999999999999999999999999999999999999999999998 889999999999
Q ss_pred HHHhhcCCeEEEeecCCCceEeeecCCC------cEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchh
Q 017802 78 ISIMAKSGFAELIDFNPIRTTDVQLPAG------GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQE 151 (365)
Q Consensus 78 ~~~~Gg~~~~~~i~~~~~~~~~~~~p~~------~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~ 151 (365)
++++||...+.+.++++..++++++|+. +.+++++|+.++ ++ .+++++..
T Consensus 163 a~~~Gg~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~lvi~~t~~~~---~a---------------~~~l~~~~------ 218 (357)
T 3k85_A 163 AAAFGGFNYMEFLQNDLVIVNPLKMKRWIVDELESSMVLYFTGRSR---SS---------------AAIINEQK------ 218 (357)
T ss_dssp HHHHCSEEEEEEETTTEEEEEEECCCHHHHHHHHHTEEEECC--------------------------------------
T ss_pred HHHhCCceEEEEeCCCceeEEEEecChhhhhhcCceEEEEECCCcc---cH---------------HHHHHHHH------
Confidence 9999997655555556667888888753 578899988643 21 11111100
Q ss_pred hhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHh
Q 017802 152 AISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAA 231 (365)
Q Consensus 152 ~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 231 (365)
+.+... + ..+.|+.
T Consensus 219 --------------------------------~~~~~~---------------~-------------------~~~~~~~ 232 (357)
T 3k85_A 219 --------------------------------KNTSEG---------------N-------------------QTAIEAM 232 (357)
T ss_dssp -------------------------------------------------------------------------CCTTHHH
T ss_pred --------------------------------HHhhcC---------------c-------------------HHHHHHH
Confidence 000000 0 0123455
Q ss_pred HHHHHhhhHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhhhh-cCCCChHHHHHHHHHHhCCCcEEEEccccCcc
Q 017802 232 HVYSEAKRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGG 310 (365)
Q Consensus 232 ~~~~E~~rv~~~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~-~~~s~peld~lv~~a~~~Ga~GakisGaG~GG 310 (365)
|.+.| ++.+++++|.++| ++.||++|+++|++++++ +++|+|++|.|++.+++.|++|+||||||+||
T Consensus 233 ~~i~~--~~~~~~~aL~~~d---------~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~~Ga~GaklsGaG~gG 301 (357)
T 3k85_A 233 HKIKQ--SAIDTKLALLKGD---------VGEFARILGEGWENKKKMAGAITNPMIQEAFDVATGAGAMAGKVSGAGGGG 301 (357)
T ss_dssp HHHHH--HHHHHHHHHTTTC---------HHHHHHHHHHHHHHTTC-----------CCSCTTTTSCCSEEEECCCC---
T ss_pred HHHHH--HHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCeEeEecccCCCC
Confidence 65554 6888999999998 999999999999999987 89999999999999999999999999999999
Q ss_pred eEEEEEcCCcHHHHHHHHHH
Q 017802 311 CVVALVKESIDSQFILNLKE 330 (365)
Q Consensus 311 ~vi~L~~~~~~~~~~~~l~~ 330 (365)
|+++|++++.+++++++|++
T Consensus 302 ~vial~~~~~~~~~~~~l~~ 321 (357)
T 3k85_A 302 FIMFVVEPTRKEEVVRALNN 321 (357)
T ss_dssp CEEEECCHHHHHHHHHHHHT
T ss_pred EEEEEecHHHHHHHHHHHHH
Confidence 99999987777777777764
No 7
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=100.00 E-value=7.1e-34 Score=280.28 Aligned_cols=238 Identities=18% Similarity=0.229 Sum_probs=187.2
Q ss_pred CCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCC-----CCC-------H---HHHHHHHHHhhh-hhCCCCCchh
Q 017802 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV-----EVP-------K---KEIAQLTCECEQ-FIGTQSGGMD 75 (365)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~-----~l~-------~---~el~~la~~~E~-~~g~~~G~~D 75 (365)
.+||++.+.++||.++|||||||+++|++.|++++++. +++ + .+++++|+++|+ ++|.++|. |
T Consensus 126 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~-D 204 (395)
T 1kvk_A 126 LPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV-D 204 (395)
T ss_dssp CCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSH-H
T ss_pred CCCEEEEEEecCCCCCCccHHHHHHHHHHHHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCc-c
Confidence 57999999999999999999999999999999999998 778 7 456666999998 88999997 9
Q ss_pred HHHHHhhcCCeEEEeecCCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhc
Q 017802 76 QAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISK 155 (365)
Q Consensus 76 ~~~~~~Gg~~~~~~i~~~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~ 155 (365)
++++++||. +++ ++..++++++|+++.+++++|+.+.++... + +
T Consensus 205 ~~~~~~Gg~---~~~--~~~~~~~l~~~~~~~~vl~~~~~~~~T~~~----~-----------~---------------- 248 (395)
T 1kvk_A 205 NSVSTWGGA---LRY--QQGKMSSLKRLPALQILLTNTKVPRSTKAL----V-----------A---------------- 248 (395)
T ss_dssp HHHHHHCSE---EEE--SSSCEEECSCCCCEEEEEEECCCCCCHHHH----H-----------H----------------
T ss_pred hHHhhhcce---EEE--cCCCceeccCCCCcEEEEEECCCCCchHHH----H-----------H----------------
Confidence 999999983 333 445778888777899999999986433210 0 0
Q ss_pred cccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHH
Q 017802 156 VKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYS 235 (365)
Q Consensus 156 ~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 235 (365)
.+++.. .. .++. -...++++.|++.
T Consensus 249 --~~~~~~-----------------------~~---------------~~~~---------------~~~~~~~~~~~~~ 273 (395)
T 1kvk_A 249 --GVRSRL-----------------------IK---------------FPEI---------------MAPLLTSIDAISL 273 (395)
T ss_dssp --HHHHHH-----------------------HH---------------SHHH---------------HHHHHHHHHHHHH
T ss_pred --HHHHHH-----------------------HH---------------CHHH---------------HHHHHHHHHHHHH
Confidence 000000 00 0000 0023567788888
Q ss_pred HhhhHHHH-HHHHhcccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEE
Q 017802 236 EAKRVHAF-KDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVA 314 (365)
Q Consensus 236 E~~rv~~~-~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~ 314 (365)
|..|+... ..+|.++| ++.||++|+++|.++++ |++++|++|++++.+++.|+ |+||||||||||+++
T Consensus 274 ~~~~~l~~~~~al~~~d---------~~~lg~lm~~~~~~l~~-~~~~~p~l~~l~~~a~~~Ga-ga~~sGaG~Gg~v~~ 342 (395)
T 1kvk_A 274 ECERVLGEMAAAPVPEQ---------YLVLEELMDMNQHHLNA-LGVGHASLDQLCQVTAAHGL-HSKLTGAGGGGCGIT 342 (395)
T ss_dssp HHHHHHHHHTTCCCHHH---------HHHHHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHHTTC-EEEECSSCSSSEEEE
T ss_pred HHHHHHHhhhccccHHH---------HHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHcCC-ceeeccCCCCCEEEE
Confidence 87776654 45666666 99999999999999997 79999999999999999999 999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEee-CCCceeecc
Q 017802 315 LVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASK-PSSGAAKFK 364 (365)
Q Consensus 315 L~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~-p~~Ga~v~~ 364 (365)
|++++..+++++++.+.|++.++ .+|+++ ++.|+++..
T Consensus 343 l~~~~~~~~~~~~~~~~~~~~g~------------~~~~~~~~~~G~~v~~ 381 (395)
T 1kvk_A 343 LLKPGLERAKVEAAKQALTGCGF------------DCWETSIGAPGVSMHS 381 (395)
T ss_dssp EECTTCCHHHHHHHHHHHHHTTC------------EEEEEEESCCCSEEEC
T ss_pred EecCCCCHHHHHHHHHHHHHcCC------------EEEEEecCCCcEEEEe
Confidence 99887788889899888876543 478887 677998864
No 8
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.98 E-value=1e-30 Score=251.50 Aligned_cols=233 Identities=24% Similarity=0.365 Sum_probs=177.4
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEee
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~i~ 91 (365)
+|+++++.++||.++|||||||+++|++.|++++++.++++++++++|+++|+ ++|.++|. |++++++||. .+..
T Consensus 96 ~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~G~~~G~-D~~~~~~Gg~---~~~~ 171 (332)
T 2hfs_A 96 DGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGA-DNTAATYGGL---ILYR 171 (332)
T ss_dssp SEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSSSCCCSH-HHHHHHHCEE---EEEE
T ss_pred CceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcH-hHHHHhcCCe---EEEe
Confidence 58999999999999999999999999999999999999999999999999998 78999995 9999999993 3333
Q ss_pred -cCC-CceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 017802 92 -FNP-IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (365)
Q Consensus 92 -~~~-~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~ 169 (365)
... ..+.++++|+++.+++++|+.+.++.. +++.. ..+++..
T Consensus 172 ~~~g~~~~~~~~~~~~~~~vl~~~~~~~~T~~------------------~~~~~------------~~~~~~~------ 215 (332)
T 2hfs_A 172 RQNGKSVFKPIAFQQRLYLVVVGTGINASTAK------------------VVNDV------------HKMKQQQ------ 215 (332)
T ss_dssp ECSSSEEEEEECCCSCEEEEEEECSCCCCHHH------------------HHHHH------------HHHHHHC------
T ss_pred cCCCCcceeeecCCCCcEEEEEECCCCccHHH------------------HHHHH------------HHHHHhC------
Confidence 222 257788887789999999998543211 11000 0000000
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhc
Q 017802 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (365)
Q Consensus 170 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~ 249 (365)
.+.+. .+++++.+ ++.++..+|.+
T Consensus 216 -----------------------~~~~~---------------------------~~~~~~~~------~~~~~~~al~~ 239 (332)
T 2hfs_A 216 -----------------------PVQFK---------------------------RLYDNYTH------IVSQAREALQK 239 (332)
T ss_dssp -----------------------HHHHH---------------------------HHHHHHHH------HHHHHHHHHHH
T ss_pred -----------------------HHHHH---------------------------HHHHHHHH------HHHHHHHHHHc
Confidence 00000 01222222 34567788998
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCC-cHHHHHHHH
Q 017802 250 NLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNL 328 (365)
Q Consensus 250 ~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~-~~~~~~~~l 328 (365)
+| ++.|+++|+++|..++.. ++++|+++++++.+++.|++|+||||+|+|||+++|++++ .++++.+++
T Consensus 240 ~d---------~~~l~~~~~~~~~~l~~~-~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~gg~v~~l~~~~~~a~~~~~~l 309 (332)
T 2hfs_A 240 GD---------LQRLGQLMNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASSDQRDAIVKGL 309 (332)
T ss_dssp TC---------HHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHTTCSEEEEESSCSSSEEEEEESSHHHHHHHHHHH
T ss_pred CC---------HHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHcCCceEEeccCCCCcEEEEEecCcccHHHHHHHH
Confidence 88 999999999999998874 8899999999999999999999999999999999999875 468899999
Q ss_pred HHHHHhcccCCCcccCCCCcceEEEeeCCCceee
Q 017802 329 KEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 362 (365)
Q Consensus 329 ~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 362 (365)
++.|...++ ...+.+.|++||++
T Consensus 310 ~~~~~~~~~-----------~~~~~~~~~~g~~~ 332 (332)
T 2hfs_A 310 KAKCPEAKF-----------IWRYTVQPSAASNL 332 (332)
T ss_dssp HHHCTTCCE-----------EEEEEECCSCC---
T ss_pred HHHHhcCCc-----------eEEEEeccCCCCCC
Confidence 887765332 13466888899874
No 9
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.98 E-value=4.1e-31 Score=253.66 Aligned_cols=209 Identities=17% Similarity=0.149 Sum_probs=160.0
Q ss_pred cCCceEEEEEecCCCC---CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCe
Q 017802 11 KFQLFNHINSLFFNLG---SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGF 86 (365)
Q Consensus 11 ~~~g~~i~i~s~iP~g---~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~ 86 (365)
+++||++.|.|++|.+ +|||||||+++|++.+++.+++.++++++++++|+.+|+ +.|.++| |||+++++||.
T Consensus 83 ~~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~~E~~~~g~~sg-~D~a~a~~Gg~-- 159 (335)
T 3gon_A 83 NLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSM-GDLACIAAEDL-- 159 (335)
T ss_dssp CCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCS-HHHHHHHHTSC--
T ss_pred CCCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhcCCCCC-CCcceeecCCe--
Confidence 4589999999999987 699999999999999999999999999999999999998 5566666 99999999995
Q ss_pred EEEeecC---------------------CCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHh
Q 017802 87 AELIDFN---------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145 (365)
Q Consensus 87 ~~~i~~~---------------------~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~ 145 (365)
+.|..+. .....+++.|.++.+++++++.++++... +
T Consensus 160 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~t~~~------------------v---- 217 (335)
T 3gon_A 160 VLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHM------------------V---- 217 (335)
T ss_dssp EEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCCHHHH------------------H----
T ss_pred EEEEeCCccccceeecccchhheecccccceeEEcCCccccceEEeecCChhhHHHH------------------H----
Confidence 2332221 12345666667899999999875432110 0
Q ss_pred CCCchhhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHH
Q 017802 146 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYK 225 (365)
Q Consensus 146 ~~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (365)
+.+++. ..
T Consensus 218 ----------------------------------~~v~~~-----~~--------------------------------- 225 (335)
T 3gon_A 218 ----------------------------------QQIKQN-----IN--------------------------------- 225 (335)
T ss_dssp ----------------------------------HHHGGG-----CC---------------------------------
T ss_pred ----------------------------------HHHHHH-----hH---------------------------------
Confidence 000000 00
Q ss_pred HHHHHhHHHHHhhhHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhhhh-cCCCChHHHHHHHHHHhCCCcEEEEc
Q 017802 226 LHQRAAHVYSEAKRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLT 304 (365)
Q Consensus 226 ~~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~-~~~s~peld~lv~~a~~~Ga~Gakis 304 (365)
..++.....++.++..+|.++| ++.||++|+++|.+++++ +++++|++|.|++.+++.|+ |+|||
T Consensus 226 ----~~~~~~~~~~~~~~~~aL~~~d---------~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~~g~-~aklt 291 (335)
T 3gon_A 226 ----QNFLTSSKETVVSLVEALEQGK---------SEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA-VAKSS 291 (335)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSE-EEEEC
T ss_pred ----HHHHHHHHHHHHHHHHHHHhCc---------HHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHhCCc-EEEEc
Confidence 0011122346778889999998 999999999999999997 48999999999999999996 89999
Q ss_pred cccCcceEEEEEcCC-cHHHHHHHHHH
Q 017802 305 GAGWGGCVVALVKES-IDSQFILNLKE 330 (365)
Q Consensus 305 GaG~GG~vi~L~~~~-~~~~~~~~l~~ 330 (365)
|||||||+++|++++ .++.+.++|++
T Consensus 292 GAG~Ggc~ial~~~~~~~~~i~~~~~~ 318 (335)
T 3gon_A 292 GAGGGDCGIALSFDAQSTKTLKNRWAD 318 (335)
T ss_dssp TTCSSSEEEEEECSHHHHHHHHHHHHH
T ss_pred cccchheEEEEECCHHHHHHHHHHHHH
Confidence 999999999999753 34444444443
No 10
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.98 E-value=1e-30 Score=255.12 Aligned_cols=210 Identities=16% Similarity=0.188 Sum_probs=163.9
Q ss_pred CCceEEEEEecCCC----CCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCe
Q 017802 12 FQLFNHINSLFFNL----GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGF 86 (365)
Q Consensus 12 ~~g~~i~i~s~iP~----g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~ 86 (365)
.+||++.|.++||. ++|||||||+++|++.|++++++.++++++++++|+++|+ +.| ++|++|++++++||.
T Consensus 96 ~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~g-~~~g~D~~~~~~Gg~-- 172 (365)
T 3k17_A 96 LTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQG-NGSCGDIASCMYGGW-- 172 (365)
T ss_dssp CCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-SCCSHHHHHHHHCSE--
T ss_pred CCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC-CCCcccHHHHhcCCE--
Confidence 57999999999996 5799999999999999999999999999999999999998 678 666799999999993
Q ss_pred EEEee-cC----------------------CCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHH
Q 017802 87 AELID-FN----------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 143 (365)
Q Consensus 87 ~~~i~-~~----------------------~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~ 143 (365)
.++. +. +..++++++|++ .+++++|+.++++.. +.+.+
T Consensus 173 -~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~~~-~lll~~t~~~~sT~~---------------~~~~v-- 233 (365)
T 3k17_A 173 -IAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVP-TFSVGWTGTPVSTGK---------------LVSQI-- 233 (365)
T ss_dssp -EEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCSS-EEEEEECSCCCCHHH---------------HHHHH--
T ss_pred -EEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCCcc-cEEEEECCCccchHH---------------HHHHH--
Confidence 3433 32 346778888878 999999998643211 00000
Q ss_pred HhCCCchhhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhh
Q 017802 144 KLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 223 (365)
Q Consensus 144 ~~~~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (365)
+++....
T Consensus 234 ---------------------------------------~~~~~~~---------------------------------- 240 (365)
T 3k17_A 234 ---------------------------------------HAFKQED---------------------------------- 240 (365)
T ss_dssp ---------------------------------------HHHHHHC----------------------------------
T ss_pred ---------------------------------------HHHHHhC----------------------------------
Confidence 0000000
Q ss_pred HHHHHHHhHHHHHh-hhHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhhhhcCC------CChHHHHHHHHHHhC
Q 017802 224 YKLHQRAAHVYSEA-KRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYEC------SCPELEELVNVCRNN 296 (365)
Q Consensus 224 ~~~~~r~~~~~~E~-~rv~~~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~------s~peld~lv~~a~~~ 296 (365)
-.+..+++.+. .++.+++++|.++| ++.||++|+++|++++++ ++ ++|++|+|++.+++.
T Consensus 241 ---~~~~~~~~~~~~~~~~~~~~aL~~gd---------~~~lg~lm~~~~~~l~~l-~v~~~~~is~p~ld~l~~~a~~~ 307 (365)
T 3k17_A 241 ---SKNYQHFLTRNNEIMKQIIQAFHTKD---------EELLYSSIKENRRILQEL-GTKAGVNIETSLLKELADSAENM 307 (365)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHH-HHHHTCCCSCHHHHHHHHHHHHT
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHHHHh-hhhcCCcccCHHHHHHHHHHHhc
Confidence 01123445553 45688899999998 999999999999999985 55 999999999999999
Q ss_pred CCcEEEEccccCcceEEEEEcCC-cHHHHHHHHHH
Q 017802 297 GALGARLTGAGWGGCVVALVKES-IDSQFILNLKE 330 (365)
Q Consensus 297 Ga~GakisGaG~GG~vi~L~~~~-~~~~~~~~l~~ 330 (365)
|++ +||||||||||+++|++++ .++++.++|++
T Consensus 308 Ga~-ak~sGAGgGg~vial~~~~~~~~~l~~~l~~ 341 (365)
T 3k17_A 308 GGA-GKSSGSGGGDCGIAFSKTKELAEKLVNEWEK 341 (365)
T ss_dssp TSE-EEECTTCSSSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCE-EEecCCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 998 9999999999999999764 35555555543
No 11
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.98 E-value=7.9e-30 Score=244.84 Aligned_cols=225 Identities=26% Similarity=0.229 Sum_probs=170.3
Q ss_pred cCCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEE
Q 017802 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAEL 89 (365)
Q Consensus 11 ~~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~ 89 (365)
..+||++.+.++||.++|||||||+++|++.|++++++.++++++++++|.++|+ +.|. +|++|++++++||. .+
T Consensus 94 ~~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~-~~~~D~~~~~~Gg~---~~ 169 (321)
T 4hac_A 94 PINGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGA-ASPTDTYVSTFGGV---VT 169 (321)
T ss_dssp CCCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSC-CCSHHHHHHHHCSE---EE
T ss_pred CCCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-CcHHHHHHHHcCCe---EE
Confidence 3479999999999999999999999999999999999999999999999999998 7788 56799999999993 34
Q ss_pred eecCCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 017802 90 IDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (365)
Q Consensus 90 i~~~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~ 169 (365)
+ .+. +++++| ++.+++++|+.+.++.. +....+.++.. .+
T Consensus 170 ~-~~~---~~l~~p-~~~~vlv~p~~~~sT~~------------~~~~~~~l~~~------------------~~----- 209 (321)
T 4hac_A 170 I-PER---RKLKTP-DCGIVIGDTGVFSSTKE------------LVANVRQLRES------------------YP----- 209 (321)
T ss_dssp E-TTC---CEECCC-CCEEEEEECCCCCCHHH------------HHHHHHHHHHH------------------CH-----
T ss_pred E-cCC---ceeccC-CCEEEEEECCCCccHHH------------HHHHHHHHHhc------------------CH-----
Confidence 4 222 234456 89999999998643321 10000000000 00
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhc
Q 017802 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (365)
Q Consensus 170 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~ 249 (365)
+.+. ....+..+ .+.++..+|.+
T Consensus 210 ------------------------~~~~---------------------------~~~~~~~~------~~~~~~~al~~ 232 (321)
T 4hac_A 210 ------------------------DLIE---------------------------PLMTSIGK------ISRIGEQLVLS 232 (321)
T ss_dssp ------------------------HHHH---------------------------HHHHHHHH------HHHHHHHHHHH
T ss_pred ------------------------HHHH---------------------------HHHHHHHH------HHHHHHHHHHh
Confidence 0000 00011111 24456788998
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCCcHHHHHHHHH
Q 017802 250 NLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 329 (365)
Q Consensus 250 ~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~~~~~~~~~l~ 329 (365)
+| ++.|+++|+++|..++. +++++|++|++++.+++.|++|+||||+|+|||+++|++++.++++.+.|+
T Consensus 233 ~d---------~~~lg~~~~~~~~~~~~-~~v~~p~l~~l~~~a~~~Ga~ga~~SGaG~GG~v~al~~~~~a~~~~~~l~ 302 (321)
T 4hac_A 233 GD---------YASIGRLMNVNQGLLDA-LGVNILELSQLIYSARAAGAFGAKITGAGGGGCMVALTAPEKCNQVAEAVA 302 (321)
T ss_dssp TC---------HHHHHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEECSTTHHHHHHHHH
T ss_pred CC---------HHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHCCCCEEEECccCCCCEEEEEcCHHHHHHHHHHHH
Confidence 88 99999999999876654 589999999999999999999999999999999999996677888887776
Q ss_pred HHHHhcccCCCcccCCCCcceEEEeeCCC-ceee
Q 017802 330 EQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAK 362 (365)
Q Consensus 330 ~~y~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v 362 (365)
+. + ..+|.++++. |++|
T Consensus 303 ~~----g------------~~v~~~~~~~~G~~v 320 (321)
T 4hac_A 303 GA----G------------GKVTITKPTEQGLKV 320 (321)
T ss_dssp HT----T------------CEEEEECBCSCSSEE
T ss_pred hC----C------------CeEEEEEECCCceec
Confidence 42 1 2689999885 9986
No 12
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.97 E-value=6.5e-31 Score=254.03 Aligned_cols=209 Identities=16% Similarity=0.141 Sum_probs=164.7
Q ss_pred cCCceEEEEEecCCCC---CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeE
Q 017802 11 KFQLFNHINSLFFNLG---SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 87 (365)
Q Consensus 11 ~~~g~~i~i~s~iP~g---~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~ 87 (365)
+.+||+++|.|+||.+ +|||||||+++|++.|++++++.++++++++++|+++|.++|.++|++|++++++||..
T Consensus 85 ~~~g~~i~i~s~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~~~~~D~~~~~~Gg~~-- 162 (337)
T 2pg9_A 85 NLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLV-- 162 (337)
T ss_dssp CCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHHHHHTSCE--
T ss_pred CCCCEEEEEEccCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCEE--
Confidence 4579999999999999 99999999999999999999999999999999999999888889999999999999963
Q ss_pred EEe--ecC-------------------CCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhC
Q 017802 88 ELI--DFN-------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLG 146 (365)
Q Consensus 88 ~~i--~~~-------------------~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~ 146 (365)
.+. +.. +..++++++|+++.+++++|+.++++.. +.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~lvl~~~~~~~~T~~---------------~~~~~----- 222 (337)
T 2pg9_A 163 LYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSH---------------MVQQI----- 222 (337)
T ss_dssp EEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCCHHH---------------HHHHH-----
T ss_pred EEecCChHHhhhhhcccchhhhcccccccceeeecCCCCceEEEEECCCccchHH---------------HHHHH-----
Confidence 222 221 2357778887799999999998543211 00000
Q ss_pred CCchhhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHH
Q 017802 147 MKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKL 226 (365)
Q Consensus 147 ~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (365)
+ +. +. ++ .
T Consensus 223 ----------------~--------------------~~-----~~-~~------------------------------~ 230 (337)
T 2pg9_A 223 ----------------K--------------------QN-----IN-QN------------------------------F 230 (337)
T ss_dssp ----------------G--------------------GG-----CC-HH------------------------------H
T ss_pred ----------------H--------------------HH-----HH-HH------------------------------H
Confidence 0 00 00 00 0
Q ss_pred HHHHhHHHHHhhhHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhhhhc-CCCChHHHHHHHHHHhCCCcEEEEcc
Q 017802 227 HQRAAHVYSEAKRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLY-ECSCPELEELVNVCRNNGALGARLTG 305 (365)
Q Consensus 227 ~~r~~~~~~E~~rv~~~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~-~~s~peld~lv~~a~~~Ga~GakisG 305 (365)
..+. +.++.+++.+|.++| ++.||++|+++|+.++++. ++++|++|+|++.+++.|++ +||||
T Consensus 231 ~~~~------~~~~~~~~~aL~~~d---------~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~~Ga~-ak~sG 294 (337)
T 2pg9_A 231 LTSS------KETVVSLVEALEQGK---------SEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAV-AKSSG 294 (337)
T ss_dssp HHHH------HHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSEE-EEECT
T ss_pred HHHH------HHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHCCCE-EEEeC
Confidence 0111 235667889999998 9999999999999999874 48999999999999999999 99999
Q ss_pred ccCcceEEEEEcCC-cHHHHHHHHH
Q 017802 306 AGWGGCVVALVKES-IDSQFILNLK 329 (365)
Q Consensus 306 aG~GG~vi~L~~~~-~~~~~~~~l~ 329 (365)
||||||+++|+++. .++++.++|+
T Consensus 295 aGgGg~vial~~~~~~~~~~~~~l~ 319 (337)
T 2pg9_A 295 AGGGDCGIALSFDAQSTKTLKNRWA 319 (337)
T ss_dssp TCSSSEEEEEECSHHHHHHHHHHHH
T ss_pred CCCccEEEEEECCHHHHHHHHHHHH
Confidence 99999999999764 4555555554
No 13
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.97 E-value=2.5e-30 Score=246.23 Aligned_cols=219 Identities=21% Similarity=0.276 Sum_probs=168.8
Q ss_pred hHHHhhcCCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhc
Q 017802 5 TVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAK 83 (365)
Q Consensus 5 ~~~~~~~~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg 83 (365)
+..+.+.++|+++++.++||.++|||||||+++|++.|++++++.++++++++++|.++|+ ++|.|+| .|+.++.+||
T Consensus 77 ~~~~~~~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~E~~~~g~~sG-~d~~~~~~g~ 155 (308)
T 2x7i_A 77 FVELNNITEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSG-IDTQTIVSGK 155 (308)
T ss_dssp HHHHTTCCSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSSCCH-HHHHHHHHTS
T ss_pred HHHHHhhCCCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCch-HHHHHhhCCc
Confidence 3344555679999999999999999999999999999999999999999999999999998 7899998 5999988988
Q ss_pred CCeEEEeecCCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhh
Q 017802 84 SGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVE 163 (365)
Q Consensus 84 ~~~~~~i~~~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~ 163 (365)
. ++++ +...++++++|.++.+++++|+.+.++.. .+ +.+++
T Consensus 156 ~---~~~~-~g~~~~~~~~~~~~~~vi~~~~~~~sT~~----~~-----------------------------~~l~~-- 196 (308)
T 2x7i_A 156 P---VWFQ-KGHAETLKTLSLDGYMVVIDTGVKGSTRQ----AV-----------------------------HDVHK-- 196 (308)
T ss_dssp C---EEEE-TTEEEECSCCCBSSEEEEEECCC--CCSC----CC-----------------------------C------
T ss_pred e---EEEE-cCCCceEeccCCCceEEEEECcCCCCHHH----HH-----------------------------HHHHH--
Confidence 3 4455 44456777776688999999987433211 00 00110
Q ss_pred hhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHH
Q 017802 164 GLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAF 243 (365)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~ 243 (365)
..... + ..++ ..++ ..++.++
T Consensus 197 ---------------------~~~~~---------------~-------------------~~~~-~~~~---~~~~~~~ 217 (308)
T 2x7i_A 197 ---------------------LCEDP---------------Q-------------------YMSH-VKHI---GKLVLRA 217 (308)
T ss_dssp -------------------------C---------------C-------------------HHHH-HHHH---HHHHHHH
T ss_pred ---------------------HHhcC---------------c-------------------hHHH-HHHH---HHHHHHH
Confidence 00000 0 0011 1221 1356677
Q ss_pred HHHHhcccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcC-CcHH
Q 017802 244 KDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDS 322 (365)
Q Consensus 244 ~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~-~~~~ 322 (365)
..+|.++| ++.|+++|+++|+.+++. ++++|+++++++.+++.|++|+||||+|+|||+++|+++ +.++
T Consensus 218 ~~al~~~d---------~~~l~~~~~~~~~~~~~~-~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~GG~v~~l~~~~~~~~ 287 (308)
T 2x7i_A 218 SDVIEHHK---------FEALADIFNECHADLKAL-TVSHDKIEQLMKIGKENGAIAGKLTGAGRGGSMLLLAKDLPTAK 287 (308)
T ss_dssp HHHHHTTC---------HHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHTTCSEEEESBTTTCSSEEEEESSHHHHH
T ss_pred HHHHHcCC---------HHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHCCCcEEEeeccCCCcEEEEEeCChhHHH
Confidence 88999888 999999999999999984 899999999999999999999999999999999999987 5677
Q ss_pred HHHHHHHHHH
Q 017802 323 QFILNLKEQF 332 (365)
Q Consensus 323 ~~~~~l~~~y 332 (365)
++.+++++.|
T Consensus 288 ~~~~~l~~~~ 297 (308)
T 2x7i_A 288 NIVKAVEKAG 297 (308)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhCC
Confidence 7777776644
No 14
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.97 E-value=1.2e-28 Score=232.54 Aligned_cols=211 Identities=19% Similarity=0.237 Sum_probs=158.4
Q ss_pred CCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEe
Q 017802 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (365)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~i 90 (365)
.+|+++++.++||.++|||||||+++|++.|++++++.++++++++++|.++|+ .+|.|+|+ |++++++||. +++
T Consensus 72 ~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~p~g~-d~~~~~~gg~---~~~ 147 (292)
T 2oi2_A 72 EACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSGL-DAKTCLSDQP---IRF 147 (292)
T ss_dssp CCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCCCCSH-HHHHHTCSSC---EEE
T ss_pred CCceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCch-hHHHHhcCce---EEE
Confidence 368999999999999999999999999999999999999999999999999998 78999995 9999999984 333
Q ss_pred ecCCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 017802 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (365)
Q Consensus 91 ~~~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~ 170 (365)
.+...+++++++....+++++|+.+.++.. +.+.+....
T Consensus 148 -~~~~~~~~~~~~~~~~~~i~~~~~~~sT~~---------------~~~~l~~~~------------------------- 186 (292)
T 2oi2_A 148 -IKNVGFTELEMDLSAYLVIADTGVYGHTRE---------------AIQVVQNKG------------------------- 186 (292)
T ss_dssp -ETTTEEEECCCCCSCEEEEEECSSCCCHHH---------------HHHHHHHTG-------------------------
T ss_pred -EcCCCceeecCCCCCEEEEEECCCCCcHHH---------------HHHHHHHHH-------------------------
Confidence 334456666654333388999987533211 000110000
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhcc
Q 017802 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (365)
Q Consensus 171 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~ 250 (365)
+ ..++..+.+.+ .+.++..+|.++
T Consensus 187 -----------------------------------~-------------------~~~~~~~~~~~--~~~~~~~al~~~ 210 (292)
T 2oi2_A 187 -----------------------------------K-------------------DALPFLHALGE--LTQQAEIAISQK 210 (292)
T ss_dssp -----------------------------------G-------------------GGHHHHHHHHH--HHHHHHHHHHTT
T ss_pred -----------------------------------h-------------------hhHHHHHHHHH--HHHHHHHHHHcC
Confidence 0 00011111111 245567889988
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcC-CcHHHHHHHHH
Q 017802 251 LRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLK 329 (365)
Q Consensus 251 d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~-~~~~~~~~~l~ 329 (365)
| ++.|+++|+++|+.++.. ++++|+++++++.+++.|++|+||||+|+|||+++|+++ +.++++.++++
T Consensus 211 d---------~~~l~~~~~~~~~~l~~~-~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~l~ 280 (292)
T 2oi2_A 211 D---------AEGLGQILSQAHLHLKEI-GVSSLEADSLVETALSHGALGAKMSGGGLGGCIIALVTNLTHAQELAERLE 280 (292)
T ss_dssp C---------HHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHTTTCSEEEEESSSSSSEEEEEESCHHHHHHHHHHHH
T ss_pred C---------HHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHhCCCceeeeccCCCCcEEEEEecCchHHHHHHHHHH
Confidence 8 999999999999999974 899999999999999999999999999999999999987 56778888887
Q ss_pred HHHH
Q 017802 330 EQFY 333 (365)
Q Consensus 330 ~~y~ 333 (365)
+.+.
T Consensus 281 ~~~~ 284 (292)
T 2oi2_A 281 EKGA 284 (292)
T ss_dssp HHTC
T ss_pred hcCc
Confidence 6553
No 15
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.96 E-value=5e-28 Score=231.27 Aligned_cols=202 Identities=23% Similarity=0.315 Sum_probs=154.2
Q ss_pred CCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEe
Q 017802 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (365)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~i 90 (365)
.+|+++.+.++||.++|||||||+++|++.|++++++.++++++++++|.++|+ ++|.++| +|++++++||. .++
T Consensus 97 ~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~g~~sg-~D~~~~~~Gg~---~~~ 172 (317)
T 1kkh_A 97 KTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASI-TDTSTITYKGI---LEI 172 (317)
T ss_dssp CSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSSSCCS-HHHHHHHHCSE---EEE
T ss_pred CCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCch-HHHHHHHhCCe---EEE
Confidence 479999999999999999999999999999999999999999999999999998 7788766 89999999984 233
Q ss_pred ecCCCceEeeecC--C----CcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhh
Q 017802 91 DFNPIRTTDVQLP--A----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 164 (365)
Q Consensus 91 ~~~~~~~~~~~~p--~----~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~ 164 (365)
++..++++++| + ++.+++++|+.+.++.. +.+.+. .+++
T Consensus 173 --~~~~~~~~~~~~~~~l~~~~~~vl~~~~~~~~T~~---------------~~~~~~---------------~~~~--- 217 (317)
T 1kkh_A 173 --KNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAE---------------LVNEVA---------------KIEN--- 217 (317)
T ss_dssp --SSSCEEEECHHHHHHHHTCCEEEEEEECCCSCHHH---------------HHHHHH---------------TCTT---
T ss_pred --cCCCceEecCCcccccccCcEEEEEECCCcCcHHH---------------HHHHHH---------------Hhhc---
Confidence 44456666543 1 26899999998543211 000000 0000
Q ss_pred hhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHH
Q 017802 165 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFK 244 (365)
Q Consensus 165 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~ 244 (365)
. + ....+. .++ +.
T Consensus 218 ----------------------------~-----------~-------------------~~~~~~-------~~~--~~ 230 (317)
T 1kkh_A 218 ----------------------------K-----------D-------------------EIFKEI-------DKV--ID 230 (317)
T ss_dssp ----------------------------H-----------H-------------------HHHHHH-------HHH--HH
T ss_pred ----------------------------c-----------H-------------------HHHHHH-------HHH--HH
Confidence 0 0 000011 111 23
Q ss_pred HHHhcccccccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCCcHHHH
Q 017802 245 DTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQF 324 (365)
Q Consensus 245 ~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~~~~~~ 324 (365)
+++..+| ++.|+++|+++|..+++. ++++|+++++++.+++.| +|+||||+|+|||+++|++++.++++
T Consensus 231 ~a~~~~d---------~~~l~~~~~~~~~~~~~~-~~~~p~l~~~~~~~~~~G-~ga~~sGaG~GG~v~~l~~~~~~~~~ 299 (317)
T 1kkh_A 231 EALKIKN---------KEDFGKLMTKNHELLKKL-NISTPKLDRIVDIGNRFG-FGAKLTGAGGGGCVIILVNEEKEKEL 299 (317)
T ss_dssp HHHHCCS---------HHHHHHHHHHHHHHHHTT-TCCCHHHHHHHHHHHHHS-SEEEECSSSSSEEEEEECCGGGHHHH
T ss_pred HHHHcCC---------HHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHhcC-ceeEEeecCCCCEEEEEechhhHHHH
Confidence 5666677 999999999999998874 899999999999999999 99999999999999999987667777
Q ss_pred HHHHHH
Q 017802 325 ILNLKE 330 (365)
Q Consensus 325 ~~~l~~ 330 (365)
.++|++
T Consensus 300 ~~~l~~ 305 (317)
T 1kkh_A 300 LKELNK 305 (317)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 766653
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.96 E-value=7.1e-28 Score=227.92 Aligned_cols=219 Identities=14% Similarity=0.163 Sum_probs=169.5
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCchhHHHHHhhcCCeEEEee
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~i~ 91 (365)
+|+++.+.++||.++|||||||+++|++.|++++++.++++++++++|.++|. .+|.+++ .|..++++||. +++.+
T Consensus 75 ~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~-ddv~~~~~gg~--~~~~~ 151 (296)
T 1h72_C 75 KGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKHA-DNVAPAIFGGF--TMVTN 151 (296)
T ss_dssp CEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCCC-TTHHHHHHCSE--EEEEE
T ss_pred CCeEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcccCCCCc-cchHHHHhCCE--EEEEe
Confidence 58999999999999999999999999999999999999999999999999998 6788874 45556899985 34444
Q ss_pred cCCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 017802 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (365)
Q Consensus 92 ~~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~~ 171 (365)
..+..+.++++|+++.+++++|+.+.++.. +.
T Consensus 152 ~~~~~~~~~~~~~~~~~vl~~p~~~~~T~~---------------~~--------------------------------- 183 (296)
T 1h72_C 152 YEPLEVLHIPIDFKLDILIAIPNISINTKE---------------AR--------------------------------- 183 (296)
T ss_dssp TTTTEEEEECCCSCCCEEEECCSSCCCHHH---------------HH---------------------------------
T ss_pred CCceEEEEEcCCCCeEEEEEeCCCCccHHH---------------HH---------------------------------
Confidence 455557888888789999999987422110 00
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhccc
Q 017802 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (365)
Q Consensus 172 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d 251 (365)
+.+++. + +..|.+.+..|+.++.++|.++|
T Consensus 184 ------------~~l~~~-~-------------------------------------~~~~~~~~~~~~~~~~~al~~~d 213 (296)
T 1h72_C 184 ------------EILPKA-V-------------------------------------GLKDLVNNVGKACGMVYALYNKD 213 (296)
T ss_dssp ------------HTSCSC-C-------------------------------------CHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ------------HhccCc-C-------------------------------------cHHHHHHHHHHHHHHHHHHHcCC
Confidence 000000 0 01133344456677889999988
Q ss_pred ccccchHHHHHHHHHHH--HHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCCcHHHHHHHHH
Q 017802 252 RLLCSEEDKLKKLGDLM--NDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 329 (365)
Q Consensus 252 ~~~~~~~~~~~~lg~lm--~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~~~~~~~~~l~ 329 (365)
++.||++| |+.|+.++. .++|+++++++.+++. ++|++|||+| +|+++|++++.++++.++++
T Consensus 214 ---------~~~~~~~~~~n~~h~~~~~---~~~p~l~~~~~~~~~~-a~ga~~sGsG--~~v~~l~~~~~~~~~~~~l~ 278 (296)
T 1h72_C 214 ---------KSLFGRYMMSDKVIEPVRG---KLIPNYFKIKEEVKDK-VYGITISGSG--PSIIAFPKEEFIDEVENILR 278 (296)
T ss_dssp ---------HHHHHHHHTTCCSSHHHHH---TTSTTHHHHHHHHTTT-EEEEEECTTS--SCEEEEECGGGHHHHHHHHH
T ss_pred ---------HHHHHHHHhcCcchhhhhh---ccCccHHHHHHHHHhh-cceEEEecCC--hheEEEecHHHHHHHHHHHH
Confidence 99999999 667787774 6899999999999998 8999999888 59999996667888888887
Q ss_pred HHHHhcccCCCcccCCCCcceEEEeeCCCceeec
Q 017802 330 EQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 363 (365)
Q Consensus 330 ~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 363 (365)
+.|.. +++++++.|++++
T Consensus 279 ~~~~~----------------~~~~~~~~Ga~v~ 296 (296)
T 1h72_C 279 DYYEN----------------TIRTEVGKGVEVV 296 (296)
T ss_dssp HHCSC----------------EEEECBCCCCEEC
T ss_pred HhccC----------------ceeccCCCCeEeC
Confidence 65531 2277887799875
No 17
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.92 E-value=7.8e-24 Score=201.06 Aligned_cols=218 Identities=17% Similarity=0.202 Sum_probs=154.5
Q ss_pred cCCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEe
Q 017802 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI 90 (365)
Q Consensus 11 ~~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i 90 (365)
..+|+++++.++||.++|||||||+++|++.|++++++.++++++++++|.++| |.+ .|..++++||. .+.
T Consensus 68 ~~~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~e---g~~---ddv~~~~~GG~---~~~ 138 (298)
T 3hul_A 68 NLTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIE---GHP---DNVAPAVLGNW---VVG 138 (298)
T ss_dssp TCCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH---SCS---TTHHHHHHCSE---EEE
T ss_pred cCCceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc---CCc---ccCcccccCCE---EEE
Confidence 457999999999999999999999999999999999999999999999999998 221 45667889995 233
Q ss_pred ecCC--CceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhh
Q 017802 91 DFNP--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVA 168 (365)
Q Consensus 91 ~~~~--~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~ 168 (365)
..+. +.+.++++| ++.+++++|+...+|.. .| + .|.
T Consensus 139 ~g~ge~~~~~~~~~p-~~~~vlv~p~~~~sT~~----a~-----------~------------------~l~-------- 176 (298)
T 3hul_A 139 AKLDGEDFYVRHLFP-DCALIAFIPKAELLTSE----SR-----------G------------------VLP-------- 176 (298)
T ss_dssp EEETTEEEEEEECCC--CEEEEEECCCCCC-----------------------------------------C--------
T ss_pred EeCCCcEEEEEcCCC-CeEEEEEECCCCCCcHH----HH-----------H------------------HHh--------
Confidence 3333 234466666 59999999987422110 00 0 000
Q ss_pred hhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHh
Q 017802 169 FACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVS 248 (365)
Q Consensus 169 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~ 248 (365)
+. +. +.. .+.+..++..+..+|.
T Consensus 177 -------------------~~-~~----------------------------------~~~---~~~~~~~~~~~~~al~ 199 (298)
T 3hul_A 177 -------------------DT-LP----------------------------------FKE---AVQASSIANVMIAAIL 199 (298)
T ss_dssp -------------------CE-EE----------------------------------HHH---HHHHHHHHHHHHHHHT
T ss_pred -------------------hh-cc----------------------------------HHH---HHHHHHHHHHHHHHHH
Confidence 00 00 000 0112234566788999
Q ss_pred cccccccchHHHHHHHHHHHHH--HHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCCcHHHHHH
Q 017802 249 SNLRLLCSEEDKLKKLGDLMND--SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFIL 326 (365)
Q Consensus 249 ~~d~~~~~~~~~~~~lg~lm~~--sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~~~~~~~~ 326 (365)
++| ++.|+++|++ .|+.++.. .+|+++++++.+++.|++|++|||+| +|+++|++++.++++.+
T Consensus 200 ~~d---------~~~l~~~l~nd~~~e~~~~~---~~p~l~~l~~~~~~~Ga~ga~~SGsG--ptv~al~~~~~a~~v~~ 265 (298)
T 3hul_A 200 RND---------MTLAGEMMERDLWHEKYRSQ---LVPHLAQIRDVAKNQGAYAACLSGAG--PTVLVFAPRNLANKLQT 265 (298)
T ss_dssp TTC---------HHHHHHHHTCCCC-----CT---TGGGHHHHHHHHHTTTCCEEEECTTS--SCEEEEECGGGHHHHHH
T ss_pred cCC---------HHHHHHHHhhhHHHHHHHHh---hCchHHHHHHHHHHCCCEEEEEeccc--hheEEEECHHHHHHHHH
Confidence 998 9999999973 47777743 58999999999999999999999888 89999998666666665
Q ss_pred HHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeecc
Q 017802 327 NLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 364 (365)
Q Consensus 327 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 364 (365)
+|++ .+ .++.++++++.+ |++|.+
T Consensus 266 ~l~~----~~----------~~~~~~~~~~~~~Ga~v~~ 290 (298)
T 3hul_A 266 SLQT----LE----------IDADVLLLDVEGSGAEVFR 290 (298)
T ss_dssp HHHT----TC----------CSSEEEEEEBCCCCCEEEE
T ss_pred HHHh----cC----------CCcEEEEcccCCCceEEEe
Confidence 5543 22 256789999985 999875
No 18
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.91 E-value=4.3e-23 Score=196.66 Aligned_cols=213 Identities=14% Similarity=0.111 Sum_probs=156.1
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+|+++.+.++||.++|||||||.++|++.+++++++.++++++++++|.++| .|..++++|| +.+...
T Consensus 87 ~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~---------~Dv~~~~~Gg---~~~~~g 154 (306)
T 3pyf_A 87 PDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLG---------SDVPFALHGG---TALGTG 154 (306)
T ss_dssp CCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHC---------TTHHHHHHBS---EEEECS
T ss_pred CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCCceeecCc---eEEEEe
Confidence 5899999999999999999999999999999999999999999999999987 5999999999 345555
Q ss_pred CCCceEeeecCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcC
Q 017802 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (365)
Q Consensus 93 ~~~~~~~~~~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~~~ 172 (365)
+...+.+++.|++|++++++|+.+.+|.. +.+.+... +
T Consensus 155 ~ge~~~~l~~~~~~~~vl~~P~~~vsT~~---------------a~~~l~~~---------------~------------ 192 (306)
T 3pyf_A 155 RGEELATVLSRNTFHWVLAFADSGLLTSA---------------VYNELDRL---------------R------------ 192 (306)
T ss_dssp SSSCCEEECCSSCEEEEEEECSSCCCHHH---------------HHHHHHHH---------------H------------
T ss_pred eCCeEEEccCCCCcEEEEEECCCCCcHHH---------------HHHhhhhh---------------c------------
Confidence 55567888887899999999987533211 00000000 0
Q ss_pred CCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhcccc
Q 017802 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLR 252 (365)
Q Consensus 173 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~d~ 252 (365)
.. .+ +....++..+..+|.++|
T Consensus 193 --------------~~----------------~~---------------------------~~~~~~~~~~~~al~~~d- 214 (306)
T 3pyf_A 193 --------------EV----------------GD---------------------------PPRLGEPGPVLAALAAGD- 214 (306)
T ss_dssp --------------HH----------------SC---------------------------CCCCCCHHHHHHHHHHTC-
T ss_pred --------------cc----------------cc---------------------------cccccCHHHHHHHHHhCC-
Confidence 00 00 000012445567888888
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHhCCCcEEEEccccCcceEEEEEcCC-cHHHHHHHHHHH
Q 017802 253 LLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKEQ 331 (365)
Q Consensus 253 ~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s~peld~lv~~a~~~Ga~GakisGaG~GG~vi~L~~~~-~~~~~~~~l~~~ 331 (365)
++.|++.|.+..+..+. ..+|+++++++.+++.|++|++|||+| +|+++|++.. .++++.+.|++
T Consensus 215 --------~~~l~~~l~n~le~~~~---~~~P~l~~i~~~~~~~Ga~ga~mSGsG--ptvfal~~~~~~a~~~~~~l~~- 280 (306)
T 3pyf_A 215 --------PDQLAPLLGNEMQAAAV---SLDPALARALRAGVEAGALAGIVSGSG--PTCAFLCTSASSAIDVGAQLSG- 280 (306)
T ss_dssp --------HHHHGGGCEETTHHHHH---HHCTHHHHHHHHHHHTTCSEEEECTTS--SEEEEEESSHHHHHHHHHHHHH-
T ss_pred --------HHHHHHHhccchHHHHH---HhChHHHHHHHHHHhcCCCEEEEcCcc--hhheEEeCCHHHHHHHHHHHHh-
Confidence 99999888433333331 258999999999999999999999887 9999999763 45555555543
Q ss_pred HHhcccCCCcccCCCCcceEEEeeCCC-ceeecc
Q 017802 332 FYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 364 (365)
Q Consensus 332 y~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 364 (365)
.+ ....++++.+.+ |++|..
T Consensus 281 ---~g----------~~~~v~~~~~~~~Ga~v~~ 301 (306)
T 3pyf_A 281 ---AG----------VCRTVRVATGPVPGARVVS 301 (306)
T ss_dssp ---TT----------SSSEEEEEEECCBCSEEC-
T ss_pred ---cC----------CcceEEEeecCCCCCEEec
Confidence 33 255788877765 999864
No 19
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.89 E-value=9e-22 Score=188.14 Aligned_cols=215 Identities=15% Similarity=0.083 Sum_probs=150.2
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+|+++++.++||.++|||||||+++|++.|++++++.++++++++++|.+.+ .+...+++||. .....
T Consensus 91 ~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~~---------G~~~~~~~GG~---~~~~~ 158 (317)
T 2gs8_A 91 AFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFAS---------GSSSRSFFGPV---AAWDK 158 (317)
T ss_dssp CCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH---------GGGGGGGSCSE---EEECT
T ss_pred CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhc---------chhHhhhcCCh---heEee
Confidence 6899999999999999999999999999999999999999999999998875 23456789984 33333
Q ss_pred CCCceEeeecCCCcEEEEE--ecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 017802 93 NPIRTTDVQLPAGGTFVVA--HSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (365)
Q Consensus 93 ~~~~~~~~~~p~~~~~vli--~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~~~~~~ 170 (365)
++..+...++|.++.++++ +++.. +....+.|+.. +
T Consensus 159 ~~~~~~~~~~~~~~~~~v~i~~~~~~---~~~tt~~~~~~----------~----------------------------- 196 (317)
T 2gs8_A 159 DSGAIYKVETDLKMAMIMLVLNAAKK---PISSREGMKLC----------R----------------------------- 196 (317)
T ss_dssp TTCCEEECCCCCCEEEEEEECCCSSC---CSCHHHHHHHH----------H-----------------------------
T ss_pred CCCceeEEEccccccEEEEEEECCCc---CcccHHHHHHH----------h-----------------------------
Confidence 3333334455656775444 44321 11111111100 0
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHHHHhcc
Q 017802 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (365)
Q Consensus 171 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~al~~~ 250 (365)
+.. . ...+++.+. ..++.+++.+|.++
T Consensus 197 ----------------~~~-~---------------------------------~~~~~~~~~---~~~~~~~~~al~~~ 223 (317)
T 2gs8_A 197 ----------------DTS-T---------------------------------TFDQWVEQS---AIDYQHMLTYLKTN 223 (317)
T ss_dssp ----------------HHC-T---------------------------------THHHHHHHH---HHHHHHHHHHHHTT
T ss_pred ----------------hcC-H---------------------------------HHHHHHHHH---HHHHHHHHHHHHcC
Confidence 000 0 001122221 34677888999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhhhcCCC-------ChHHHHHHHH---HHhCCCcEEEEccccCcceEEEEEcCCc
Q 017802 251 LRLLCSEEDKLKKLGDLMNDSHHSCSVLYECS-------CPELEELVNV---CRNNGALGARLTGAGWGGCVVALVKESI 320 (365)
Q Consensus 251 d~~~~~~~~~~~~lg~lm~~sh~~lr~~~~~s-------~peld~lv~~---a~~~Ga~GakisGaG~GG~vi~L~~~~~ 320 (365)
| ++.||++|+++|..++..|..+ .|.+.++++. +++.|+.++.+||+| +|+++|++++.
T Consensus 224 d---------~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~~G~~~~~~SGaG--ptv~~l~~~~~ 292 (317)
T 2gs8_A 224 N---------FEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQEGFACYFTMDAG--PNVKVLCLEKD 292 (317)
T ss_dssp C---------HHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS--SCEEEEEEGGG
T ss_pred C---------HHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHhcCCcEEEEecCC--CeEEEEEcHHH
Confidence 8 9999999999988888765444 4445666654 344899999999877 99999998777
Q ss_pred HHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceee
Q 017802 321 DSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 362 (365)
Q Consensus 321 ~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 362 (365)
++++.+.+++ ...+|++++++|++|
T Consensus 293 ~~~v~~~l~~-----------------~~~~~~~~~~~~~~~ 317 (317)
T 2gs8_A 293 LAQLAERLGK-----------------NYRIIVSKTKDLPDV 317 (317)
T ss_dssp HHHHHHHHHT-----------------TSEEEEEEBCCCCCC
T ss_pred HHHHHHHHhc-----------------CCeEEEEecCCCCCC
Confidence 7777777765 126999999999986
No 20
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.88 E-value=4e-21 Score=184.99 Aligned_cols=222 Identities=14% Similarity=0.125 Sum_probs=154.9
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+|+++.+.++||.++|||||||.++|++.|++++++.++++++++++|.++| .|...+++||+ ..+..
T Consensus 93 ~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~~~~---------g~~~~~~~GG~---~~~~~ 160 (332)
T 3qt5_A 93 LHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGS---------GSASRSIFGGF---AEWEK 160 (332)
T ss_dssp CEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHC---------GGGGGGGSCSE---EEEEC
T ss_pred CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc---------CCchhhhcCCe---EEEec
Confidence 5899999999999999999999999999999999999999999999999975 25667889994 23322
Q ss_pred -CC-C--ceEeee---cCCCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhh
Q 017802 93 -NP-I--RTTDVQ---LPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGL 165 (365)
Q Consensus 93 -~~-~--~~~~~~---~p~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~ 165 (365)
.. . ...+++ .++++.++++.|.....+.++ |. .++..
T Consensus 161 g~~~~~~~~~~l~~~~~~~~l~~vv~vp~~~~~~~ss-------~~--------~~~~~--------------------- 204 (332)
T 3qt5_A 161 GHDDLTSYAHGINSNGWEKDLSMIFVVINNQSKKVSS-------RS--------GMSLT--------------------- 204 (332)
T ss_dssp CSSTTTCEEEEECCTTGGGGEEEEEECCCCCCCC--C-------HH--------HHHHH---------------------
T ss_pred CCCCccceeeecccccCCCCcEEEEEEEcCCCCCCch-------HH--------HHHHh---------------------
Confidence 11 1 235554 334788888888753211111 10 00000
Q ss_pred hhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHH
Q 017802 166 CVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKD 245 (365)
Q Consensus 166 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~ 245 (365)
++.. . . ...+..+ + ..++..+..
T Consensus 205 --------------------~~~s-~---------------~------------------~~~~v~~-~--~~~~~~l~~ 227 (332)
T 3qt5_A 205 --------------------RDTS-R---------------F------------------YQYWLDH-V--DEDLNEAKE 227 (332)
T ss_dssp --------------------HHHC-T---------------T------------------HHHHHHH-H--HHHHHHHHH
T ss_pred --------------------hhcC-h---------------h------------------HHHHHHH-H--HHHHHHHHH
Confidence 0000 0 0 0011111 1 126777889
Q ss_pred HHhcccccccchHHHHHHHHHHHHHH----HHHhhhhc---CCCChHHHHHHHHHH---hCCCcEEEEccccCcceEEEE
Q 017802 246 TVSSNLRLLCSEEDKLKKLGDLMNDS----HHSCSVLY---ECSCPELEELVNVCR---NNGALGARLTGAGWGGCVVAL 315 (365)
Q Consensus 246 al~~~d~~~~~~~~~~~~lg~lm~~s----h~~lr~~~---~~s~peld~lv~~a~---~~Ga~GakisGaG~GG~vi~L 315 (365)
+|.++| ++.|+++|.++ |+.+++.+ -..+|+++++++.+. +.|++|+.+||+| +|+++|
T Consensus 228 Al~~~D---------~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~~Ga~~a~~SGaG--Ptv~~l 296 (332)
T 3qt5_A 228 AVKNQD---------FQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRKANLPCYFTMDAG--PNVKVL 296 (332)
T ss_dssp HHHHTC---------HHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS--SCEEEE
T ss_pred HHHcCC---------HHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHhCCCcEEEEeCCC--CcEEEE
Confidence 999998 99999999844 44444431 114799999999885 7899999999776 999999
Q ss_pred EcCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEe-eCCCceeecc
Q 017802 316 VKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFAS-KPSSGAAKFK 364 (365)
Q Consensus 316 ~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~-~p~~Ga~v~~ 364 (365)
++++.++++.+.|++.|. ...++++ +|+.|+++++
T Consensus 297 ~~~~~a~~v~~~l~~~~~--------------~~~~~v~~~~g~G~~~~~ 332 (332)
T 3qt5_A 297 VEKKNKQAVMEQFLKVFD--------------ESKIIASDIISSGVEIIK 332 (332)
T ss_dssp EEHHHHHHHHHHHHTTSC--------------GGGEEEEEBCSSCCEECC
T ss_pred ECHHHHHHHHHHHHHhCC--------------CceEEEeccccCCcEecC
Confidence 987677777777765442 3468888 9999999863
No 21
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.82 E-value=4.2e-20 Score=173.11 Aligned_cols=88 Identities=15% Similarity=0.049 Sum_probs=76.6
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+|+++++.++||.++|||||||+++|++.|++++++.++ +++++|.++| .|..++++||. .+...
T Consensus 75 ~g~~i~i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l---~l~~la~~~g---------~dv~~~~~Gg~---~~~~g 139 (275)
T 1uek_A 75 GGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV---DLFALARTLG---------ADVPFFLLGRG---AEARG 139 (275)
T ss_dssp CEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHC---------TTHHHHHHCSE---EEEET
T ss_pred CCEEEEEecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHhC---------CChHHHhcCCe---EEEEc
Confidence 689999999999999999999999999999999999888 8999999987 49999999994 45555
Q ss_pred CCCceEeeecCCCcEEEEEecCCc
Q 017802 93 NPIRTTDVQLPAGGTFVVAHSLAE 116 (365)
Q Consensus 93 ~~~~~~~~~~p~~~~~vli~s~~~ 116 (365)
++..+.+++ ++++.+++++|+.+
T Consensus 140 ~g~~~~~l~-~~~~~~vl~~p~~~ 162 (275)
T 1uek_A 140 VGERLKPLA-LPPVPAVVFFPGLR 162 (275)
T ss_dssp TTTEEEEEC-CCCEEEEEEECCCC
T ss_pred cCceeEEcc-CCCcEEEEEeCCCC
Confidence 555677887 56899999999874
No 22
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.81 E-value=6.7e-20 Score=171.46 Aligned_cols=92 Identities=12% Similarity=0.122 Sum_probs=79.7
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+|+++.+.++||.++|||||||.++|++.|++++++.++++++++++|.++| .|..++++||. .+...
T Consensus 80 ~g~~i~i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l~~~el~~la~~~e---------~dv~~~~~gg~---~~~~g 147 (271)
T 2v8p_A 80 INYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSIS---------ADAPFFLLGKS---AIGRG 147 (271)
T ss_dssp CCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHC---------TTTGGGGTCSE---EEEET
T ss_pred CCeEEEEEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC---------CCHHHHhcCCe---EEEEE
Confidence 6899999999999999999999999999999999999999999999999998 38888999983 34444
Q ss_pred CCCceEeeecCCCcEEEEEecCCc
Q 017802 93 NPIRTTDVQLPAGGTFVVAHSLAE 116 (365)
Q Consensus 93 ~~~~~~~~~~p~~~~~vli~s~~~ 116 (365)
+...+.++++|.++.+++++|+.+
T Consensus 148 ~g~~~~~l~~~~~~~~vl~~p~~~ 171 (271)
T 2v8p_A 148 KGEVLEPVETEISGKITLVIPQVS 171 (271)
T ss_dssp TTTEEEECCCCCCSEEEEEECSSC
T ss_pred cCCEEEEccCCCCcEEEEEeCCCC
Confidence 555677777444899999999874
No 23
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.76 E-value=4.8e-17 Score=161.03 Aligned_cols=205 Identities=13% Similarity=0.132 Sum_probs=138.9
Q ss_pred CCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEee
Q 017802 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (365)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~ 91 (365)
..|++|.+.++||.++|||||||.++|++.|++++++++++.++|+++|.+.+ .+...+++||+ ..++
T Consensus 121 ~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~g~---------Gs~~~sl~GG~---v~~~ 188 (416)
T 1fi4_A 121 QWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGS---------GSACRSLFGGY---VAWE 188 (416)
T ss_dssp GSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH---------GGGGGGGSSSE---EEEE
T ss_pred CCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccC---------CchheEeeCCc---EEEe
Confidence 46899999999999999999999999999999999999999999999998865 24567899995 2333
Q ss_pred c-C-----CCceEeeec---CCCcEEEE--EecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccch
Q 017802 92 F-N-----PIRTTDVQL---PAGGTFVV--AHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLS 160 (365)
Q Consensus 92 ~-~-----~~~~~~~~~---p~~~~~vl--i~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~ 160 (365)
. . .....+++. .+++.+++ ++++. +.......|+.++
T Consensus 189 ~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~---~~~sst~~~~~~~----------------------------- 236 (416)
T 1fi4_A 189 MGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIK---KDVSSTQGMQLTV----------------------------- 236 (416)
T ss_dssp CCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCS---CCCCHHHHHHHHH-----------------------------
T ss_pred cCCcCCCCCceeEEecCccCCcccEEEEEEECCCC---CCcCCHHHHHHHh-----------------------------
Confidence 2 1 122345543 23666333 33322 1111111111000
Q ss_pred hhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhH
Q 017802 161 DVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV 240 (365)
Q Consensus 161 ~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv 240 (365)
+.. .. ...++.++. ..++
T Consensus 237 --------------------------~~~----------------~~------------------~~~~~~~i~--~~~~ 254 (416)
T 1fi4_A 237 --------------------------ATS----------------EL------------------FKERIEHVV--PKRF 254 (416)
T ss_dssp --------------------------HHC----------------SH------------------HHHHHHTHH--HHHH
T ss_pred --------------------------hcC----------------Hh------------------HHHHHHHHH--HHHH
Confidence 000 00 001122211 2467
Q ss_pred HHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhhhhc-------CCCChHHHHHHHHHHh----CC-CcEEEEccccC
Q 017802 241 HAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLY-------ECSCPELEELVNVCRN----NG-ALGARLTGAGW 308 (365)
Q Consensus 241 ~~~~~al~~~d~~~~~~~~~~~~lg~lm~~sh~~lr~~~-------~~s~peld~lv~~a~~----~G-a~GakisGaG~ 308 (365)
..++.+|.++| ++.||++|.++|..+...+ ....|....+++.+.+ .| +.++.+||||
T Consensus 255 ~~l~~AL~~gD---------~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG- 324 (416)
T 1fi4_A 255 EVMRKAIVEKD---------FATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG- 324 (416)
T ss_dssp HHHHHHHHTTC---------HHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSS-
T ss_pred HHHHHHHHcCC---------HHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCC-
Confidence 77889999998 9999999987776665532 1245677888776644 38 7888999877
Q ss_pred cceEEEEEcCCcHHHHHHHHHHHHH
Q 017802 309 GGCVVALVKESIDSQFILNLKEQFY 333 (365)
Q Consensus 309 GG~vi~L~~~~~~~~~~~~l~~~y~ 333 (365)
+++++|++++.++++.+.+++.|.
T Consensus 325 -Ptv~al~~~~~~~~v~~~l~~~~~ 348 (416)
T 1fi4_A 325 -PNAVLYYLAENESKLFAFIYKLFG 348 (416)
T ss_dssp -SCEEEEEEGGGHHHHHHHHHHHHT
T ss_pred -CcEEEEECHHHHHHHHHHHHHhcc
Confidence 999999987778889999988776
No 24
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.73 E-value=6.1e-18 Score=159.24 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=79.7
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEeec
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~~ 92 (365)
+|+++.+.++||.++|||||||+++|++.|++++++.++++++++++|.++| .|..++++||. .+...
T Consensus 88 ~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~e---------~dv~~~~~gg~---~~~~g 155 (283)
T 2ww4_A 88 SGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLG---------ADVPVFVRGHA---AFAEG 155 (283)
T ss_dssp CEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTC---------TTHHHHHHTBC---EEEET
T ss_pred CceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC---------CCHHHhhcCCe---EEEEe
Confidence 6899999999999999999999999999999999999999999999999988 49999999994 34555
Q ss_pred CCCceEeeecCCCcEEEEEecCCcc
Q 017802 93 NPIRTTDVQLPAGGTFVVAHSLAES 117 (365)
Q Consensus 93 ~~~~~~~~~~p~~~~~vli~s~~~~ 117 (365)
++..+.++++| ++.+++++|+.+.
T Consensus 156 ~g~~~~~l~~~-~~~~vl~~p~~~~ 179 (283)
T 2ww4_A 156 VGEILTPVDPP-EKWYLVAHPGVSI 179 (283)
T ss_dssp TTTEEEECCCC-CCEEEEECCSCCC
T ss_pred cCccceEcCCC-CcEEEEEeCCCCC
Confidence 55567777766 7899999998743
No 25
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.73 E-value=5.2e-16 Score=148.12 Aligned_cols=201 Identities=15% Similarity=0.085 Sum_probs=134.8
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHH----HHHHHHhCCCC-CHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeE
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSST----VALMAAFGVEV-PKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 87 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~----~al~~~~~~~l-~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~ 87 (365)
.|++|.+.++||.++|||||||.++|++ .++++++|+++ +++++.++|.+.+ .+...|++||+
T Consensus 91 ~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gs---------Gsaa~si~GG~--- 158 (323)
T 3lto_A 91 GGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGS---------GSSCRSFYAPW--- 158 (323)
T ss_dssp CCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTC---------GGGGGGGSCSE---
T ss_pred CCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC---------CCcchhhhCCE---
Confidence 6899999999999999999999999999 99999999999 9999999997754 24456899994
Q ss_pred EEeecCCCceEeee-cCCCcEEEEEe-cCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhh
Q 017802 88 ELIDFNPIRTTDVQ-LPAGGTFVVAH-SLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGL 165 (365)
Q Consensus 88 ~~i~~~~~~~~~~~-~p~~~~~vli~-s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~~~ 165 (365)
..+... ..+++. .++++.++++. +..+. ..++. .+.+.
T Consensus 159 v~~~~g--~~~~l~~~~~~l~~~v~vi~~~~~-~vsT~------------~~~~~------------------------- 198 (323)
T 3lto_A 159 ALWTGD--KVSAIDLPYKDLLHQVIVISSQEK-EIPSR------------VAHKL------------------------- 198 (323)
T ss_dssp EEEETT--EEEECCCSCCSCEEEEEECCCCTT-CCCHH------------HHHHH-------------------------
T ss_pred EEEecC--cEEEccCCCCCCeEEEEEECCCCC-CCCCH------------HHHhh-------------------------
Confidence 233221 233442 22366664443 32210 01110 00000
Q ss_pred hhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHHHH
Q 017802 166 CVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKD 245 (365)
Q Consensus 166 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~~~ 245 (365)
+...++ + ..+... ...++..++.
T Consensus 199 --------------------l~~~~~----------------~------------------~~~~~~---~~~~~~~l~~ 221 (323)
T 3lto_A 199 --------------------VKTSPF----------------Y------------------ETRSER---AEANLKLLLN 221 (323)
T ss_dssp --------------------GGGSTT----------------T------------------TTHHHH---HHHHHHHHHH
T ss_pred --------------------cccChh----------------H------------------HHHHHH---hHHHHHHHHH
Confidence 000000 0 000000 1246778889
Q ss_pred HHhcccccccchHHHHHHHHHHHHHH----HHHhhhh--c-CCCChHHHHHHHHHHh----CCCcEEEEccccCcceEEE
Q 017802 246 TVSSNLRLLCSEEDKLKKLGDLMNDS----HHSCSVL--Y-ECSCPELEELVNVCRN----NGALGARLTGAGWGGCVVA 314 (365)
Q Consensus 246 al~~~d~~~~~~~~~~~~lg~lm~~s----h~~lr~~--~-~~s~peld~lv~~a~~----~Ga~GakisGaG~GG~vi~ 314 (365)
+|.++| ++.|+++|..+ |+.+++. | -.-.|+..++++.+.+ .|++++.++||| +++++
T Consensus 222 AL~~gD---------~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAG--Pnv~~ 290 (323)
T 3lto_A 222 AFENKD---------WTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAG--PNVHL 290 (323)
T ss_dssp HHHTTC---------HHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSS--SCEEE
T ss_pred HHHcCC---------HHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCC--CCeEE
Confidence 999999 99999987644 4444442 1 2247777777777755 689999999999 88999
Q ss_pred EEcCCcHHHHHHHHHHHHH
Q 017802 315 LVKESIDSQFILNLKEQFY 333 (365)
Q Consensus 315 L~~~~~~~~~~~~l~~~y~ 333 (365)
|++++..+.+.+.|++.+.
T Consensus 291 l~~~~~~~~v~~~l~~~~~ 309 (323)
T 3lto_A 291 LYRSDQTDLARQFKSDHLV 309 (323)
T ss_dssp EECGGGHHHHHHHHHHHTT
T ss_pred EEecccHHHHHHHHHHHhH
Confidence 9988889999999987664
No 26
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.72 E-value=1e-15 Score=149.93 Aligned_cols=204 Identities=13% Similarity=0.129 Sum_probs=132.1
Q ss_pred CCceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEee
Q 017802 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (365)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~ 91 (365)
.+|++|.+.++||.++|||||||.++|++.|++++++++ ++++++|.+.+ .|.+.+++||+ ..+.
T Consensus 95 ~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~---------Gsva~s~~GG~---v~~~ 159 (380)
T 2hke_A 95 NKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGS---------GSACRSAFGGF---VIWN 159 (380)
T ss_dssp TCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHC---------GGGGGGGSSSE---EEEE
T ss_pred CCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcC---------cceeeehhCCe---EEEe
Confidence 468999999999999999999999999999999999976 88999998754 25677899995 2333
Q ss_pred cC------CCceEeeecC---CCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhh
Q 017802 92 FN------PIRTTDVQLP---AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDV 162 (365)
Q Consensus 92 ~~------~~~~~~~~~p---~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v 162 (365)
.. .....+++.+ +++.++++.+..+.....+ + .+.+ +++
T Consensus 160 ~g~~~~~~~~~~~~l~~~~~~p~l~~~vlv~~~~~~~~ss-------t-~~~r---~~~--------------------- 207 (380)
T 2hke_A 160 KGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSS-------T-KGMQ---QSL--------------------- 207 (380)
T ss_dssp CCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSCCCCH-------H-HHHH---HHH---------------------
T ss_pred cCCCCCCCcceEEeccCcccCCcceEEEEEecCCCCCCCC-------H-HHHH---HHH---------------------
Confidence 21 1234566542 3555444432211000000 0 0000 000
Q ss_pred hhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHH
Q 017802 163 EGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHA 242 (365)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~ 242 (365)
+..++ ...+..++ ...++..
T Consensus 208 ------------------------~~~~~----------------------------------~~~~~~~~--~~~~~~~ 227 (380)
T 2hke_A 208 ------------------------KTSPL----------------------------------MKKRISET--VPERMKI 227 (380)
T ss_dssp ------------------------HHCTT----------------------------------HHHHHHTH--HHHHHHH
T ss_pred ------------------------hcChh----------------------------------HHHHHHHH--HHHHHHH
Confidence 00000 00011110 1235677
Q ss_pred HHHHHhcccccccchHHHHHHHHHHHHHH----HHHhhhh--c-CCCChHHHHHHHHHHhC----C-CcEEEEccccCcc
Q 017802 243 FKDTVSSNLRLLCSEEDKLKKLGDLMNDS----HHSCSVL--Y-ECSCPELEELVNVCRNN----G-ALGARLTGAGWGG 310 (365)
Q Consensus 243 ~~~al~~~d~~~~~~~~~~~~lg~lm~~s----h~~lr~~--~-~~s~peld~lv~~a~~~----G-a~GakisGaG~GG 310 (365)
++.+|.++| ++.||++|.++ |+..++. | ....|....+++.+.+. | +.++.+|||| +
T Consensus 228 l~~Al~~~D---------~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaG--P 296 (380)
T 2hke_A 228 ASRAIKARD---------FATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAG--A 296 (380)
T ss_dssp HHHHHHHTC---------HHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS--S
T ss_pred HHHHHHcCC---------HHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCC--C
Confidence 889999998 99999999654 4433332 1 23578888888886553 8 8889999776 9
Q ss_pred eEEEEEcCCcHHHHHHHHHHHHH
Q 017802 311 CVVALVKESIDSQFILNLKEQFY 333 (365)
Q Consensus 311 ~vi~L~~~~~~~~~~~~l~~~y~ 333 (365)
++++|++++.++++.+.+++.|.
T Consensus 297 tv~~l~~~~~~~~v~~~l~~~~~ 319 (380)
T 2hke_A 297 NCFLFVLKEDLPEAVAMLMEHFP 319 (380)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHSC
T ss_pred cEEEEECHHHHHHHHHHHHHhcc
Confidence 99999987778888889987765
No 27
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.65 E-value=1e-14 Score=142.50 Aligned_cols=233 Identities=13% Similarity=0.129 Sum_probs=148.8
Q ss_pred CceEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCchhHHHHHhhcCCeEEEee-
Q 017802 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID- 91 (365)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaAl~va~~~al~~~~~~~l~~~el~~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~i~- 91 (365)
.+++|.+.++||.++|||||||.++|++.|+++++++ .+++.++|.+.+ .+...++|||+ ..+.
T Consensus 122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~s---------Gs~~~s~~GG~---v~w~~ 186 (414)
T 3f0n_A 122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGS---------GSACRSLYGGF---VEWQM 186 (414)
T ss_dssp SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHC---------GGGGGGGSSSE---EEECC
T ss_pred CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhC---------CCcchHhhCCE---EEEEe
Confidence 5899999999999999999999999999999999997 367888887764 24566899994 3332
Q ss_pred cC-----CCceEeeecC---CCcEEEEEecCCcchhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhh
Q 017802 92 FN-----PIRTTDVQLP---AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVE 163 (365)
Q Consensus 92 ~~-----~~~~~~~~~p---~~~~~vli~s~~~~~k~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~v~ 163 (365)
+. .....+++.+ +++.++++.+.....+.++ | .. ++.
T Consensus 187 ~~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsS-------T-~~-------------------------mr~-- 231 (414)
T 3f0n_A 187 GEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGS-------T-VG-------------------------MQT-- 231 (414)
T ss_dssp CSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCH-------H-HH-------------------------HHH--
T ss_pred ccCCCCCceEEEEcccccCCCCceEEEEEeCccccCCCc-------h-HH-------------------------HHh--
Confidence 21 1223455422 3677776664321101110 0 00 000
Q ss_pred hhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhcCCCchhHHhhhhhHHHHHHHhHHHHHhhhHHHH
Q 017802 164 GLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAF 243 (365)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~rv~~~ 243 (365)
.+++. .+ ...+..++ -..|+..+
T Consensus 232 ---------------------~l~ts----------------~~------------------~~~~v~~~--~~~~~~~l 254 (414)
T 3f0n_A 232 ---------------------SVETS----------------TL------------------LKFRAESV--VPERMKEM 254 (414)
T ss_dssp ---------------------HHHHC----------------HH------------------HHHHHHHT--HHHHHHHH
T ss_pred ---------------------hcccC----------------cc------------------HHHHHHHH--HHHHHHHH
Confidence 00000 00 00111110 02467788
Q ss_pred HHHHhcccccccchHHHHHHHHHHHHH----HHHHhhhh--c-CCCChHHHHHHHHHHhC-----CCcEEEEccccCcce
Q 017802 244 KDTVSSNLRLLCSEEDKLKKLGDLMND----SHHSCSVL--Y-ECSCPELEELVNVCRNN-----GALGARLTGAGWGGC 311 (365)
Q Consensus 244 ~~al~~~d~~~~~~~~~~~~lg~lm~~----sh~~lr~~--~-~~s~peld~lv~~a~~~-----Ga~GakisGaG~GG~ 311 (365)
+.+|.++| ++.||+++.. -|+.+++- | -.-+|+..++++.+.+. |++++.++||| ++
T Consensus 255 ~~AL~~gD---------~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsdAG--Pn 323 (414)
T 3f0n_A 255 TRCIQEQD---------FQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAG--PN 323 (414)
T ss_dssp HHHHHTTC---------HHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS--SC
T ss_pred HHHHHcCC---------HHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEECCC--CC
Confidence 99999999 9999998663 36656552 1 23478888888877763 89999999998 89
Q ss_pred EEEEEcCCcHHHHHHHHHHHHHhcccCCCccc---------------------CCCCcceEEEeeCCCceeec
Q 017802 312 VVALVKESIDSQFILNLKEQFYQSRIDRGVIN---------------------NNDLGLYVFASKPSSGAAKF 363 (365)
Q Consensus 312 vi~L~~~~~~~~~~~~l~~~y~~~~~~~~~~~---------------------~~~~~~~~~~~~p~~Ga~v~ 363 (365)
+++|++++..+.+.+.|++.|........++. ..+--.+++.|+++.|-+++
T Consensus 324 v~vl~~~~~~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~g~gp~~~ 396 (414)
T 3f0n_A 324 AVIFTLEDTVAEFVAAVRHSFPPAANGDKFLKGLQVAPVLLSDELKAALVVEPSPGGVQYIIATQVGPGPQVL 396 (414)
T ss_dssp EEEEEEHHHHHHHHHHHHHHSCCSCC--CCEEESCCCCCCCCHHHHHHSCSSCCTTSEEEEEEEEBCCCCEEE
T ss_pred EEEEEecccHHHHHHHHHHhcCCCCCcccccccCccccccCChhhhhcccccccCCceeEEEECCCCCCCEEC
Confidence 99999888899999999876654210000000 01123367789999998875
No 28
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=57.74 E-value=23 Score=27.76 Aligned_cols=54 Identities=9% Similarity=0.001 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHhCCCcEEEEccccCcc----e-EEEEEcCCcHHHHHHHHHHHHHhcc
Q 017802 283 CPELEELVNVCRNNGALGARLTGAGWGG----C-VVALVKESIDSQFILNLKEQFYQSR 336 (365)
Q Consensus 283 ~peld~lv~~a~~~Ga~GakisGaG~GG----~-vi~L~~~~~~~~~~~~l~~~y~~~~ 336 (365)
...+|.+.++..+.|..|.+++-.|++| . +...++++.++++++.+.+..+.+.
T Consensus 15 p~kld~V~~AL~~~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I~~~a~TR~ 73 (114)
T 3m05_A 15 DKDANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEIIKKASHTRE 73 (114)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHHHHHcCCce
Confidence 3567889998889999998887665543 3 4444666789999999999876554
No 29
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=47.12 E-value=58 Score=24.91 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHhCCCcEEE---EccccC--cc-----------------eEEEEEcCCcHHHHHHHHHHHHHhcccCCC
Q 017802 283 CPELEELVNVCRNNGALGAR---LTGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 340 (365)
Q Consensus 283 ~peld~lv~~a~~~Ga~Gak---isGaG~--GG-----------------~vi~L~~~~~~~~~~~~l~~~y~~~~~~~~ 340 (365)
...++.+.+++.+.|+-|.. ..|-|- |. -+..+++++.++.+++.+++..+.... |
T Consensus 10 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~tg~~--G 87 (112)
T 2eg2_A 10 PFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKTAQTGRV--G 87 (112)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHHHHCCSST--T
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHHHhcCCCC--C
Confidence 45678899988888876643 333332 11 366677778899999999988764221 1
Q ss_pred cccCCCCcceEEEeeCCCc
Q 017802 341 VINNNDLGLYVFASKPSSG 359 (365)
Q Consensus 341 ~~~~~~~~~~~~~~~p~~G 359 (365)
+..+|++...+-
T Consensus 88 -------dGkiFV~pVe~~ 99 (112)
T 2eg2_A 88 -------DGKIFIIPVEDV 99 (112)
T ss_dssp -------CCEEEEEECSCC
T ss_pred -------CEEEEEEEhHhE
Confidence 345676655443
No 30
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=44.55 E-value=53 Score=25.29 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHhCCCcEE---EEccccC--cc-----------------eEEEEEcCCcHHHHHHHHHHHHHh
Q 017802 283 CPELEELVNVCRNNGALGA---RLTGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQ 334 (365)
Q Consensus 283 ~peld~lv~~a~~~Ga~Ga---kisGaG~--GG-----------------~vi~L~~~~~~~~~~~~l~~~y~~ 334 (365)
...++.+.+++.+.|+-|. ...|-|- |. .+..+++++.++.+++.+++..+.
T Consensus 10 ~~~~~~V~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 83 (116)
T 1vfj_A 10 PEKLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKAART 83 (116)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 4567889999998887664 3334442 12 477888888999999999988754
No 31
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=43.11 E-value=45 Score=25.94 Aligned_cols=53 Identities=25% Similarity=0.276 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHHhCCCcEEE---EccccC-cce------------------EEEEEcCCcHHHHHHHHHHHHHh
Q 017802 282 SCPELEELVNVCRNNGALGAR---LTGAGW-GGC------------------VVALVKESIDSQFILNLKEQFYQ 334 (365)
Q Consensus 282 s~peld~lv~~a~~~Ga~Gak---isGaG~-GG~------------------vi~L~~~~~~~~~~~~l~~~y~~ 334 (365)
....++.+.+++.+.|+.|.. ..|-|- +|. +..+++++.++.+++.+++..+.
T Consensus 11 ~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~~~~pK~~ieivv~de~v~~vv~~I~~~~~t 85 (119)
T 2j9c_A 11 RPEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVDNVIDIICENART 85 (119)
T ss_dssp CGGGHHHHHHHHHHTTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEeeEeecccCCccceeeccccccccCcEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 345678999999998887753 333332 111 67778788999999999998764
No 32
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=38.80 E-value=90 Score=23.82 Aligned_cols=68 Identities=21% Similarity=0.292 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHhCCCcEE---EEccccC-cc------------------eEEEEEcCCcHHHHHHHHHHHHHhcccCCC
Q 017802 283 CPELEELVNVCRNNGALGA---RLTGAGW-GG------------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 340 (365)
Q Consensus 283 ~peld~lv~~a~~~Ga~Ga---kisGaG~-GG------------------~vi~L~~~~~~~~~~~~l~~~y~~~~~~~~ 340 (365)
...++.+.+++.+.|+-|. ...|-|- .| -+..+++++.++.+++.+++..+.... |
T Consensus 12 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg~~--G 89 (114)
T 3bzq_A 12 PFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAARTGKI--G 89 (114)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEECC---------------CEEEEEEEEEEEETTTHHHHHHHHHHHHCCSST--T
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEEeccccCcccceeccccccccccEEEEEEEECHHHHHHHHHHHHHHhcCCCC--C
Confidence 4567888888888877664 3334332 12 366777788999999999998764321 1
Q ss_pred cccCCCCcceEEEeeCCCc
Q 017802 341 VINNNDLGLYVFASKPSSG 359 (365)
Q Consensus 341 ~~~~~~~~~~~~~~~p~~G 359 (365)
+..+|++...+-
T Consensus 90 -------dGkiFV~pVe~~ 101 (114)
T 3bzq_A 90 -------DGKVWVSPVDTI 101 (114)
T ss_dssp -------CCEEEEEEESCC
T ss_pred -------CEEEEEEEhHHe
Confidence 345666655443
No 33
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=35.65 E-value=94 Score=23.76 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHhCCCcEE---EEccccC--cc-----------------eEEEEEcCCcHHHHHHHHHHHHHhcccCCC
Q 017802 283 CPELEELVNVCRNNGALGA---RLTGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 340 (365)
Q Consensus 283 ~peld~lv~~a~~~Ga~Ga---kisGaG~--GG-----------------~vi~L~~~~~~~~~~~~l~~~y~~~~~~~~ 340 (365)
...++.+.+++.+.|+.|. ...|-|- |. -+..+++++.++.+++.+++..+.... |
T Consensus 12 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~K~~ieivv~d~~v~~vv~~I~~~~~tg~~--G 89 (114)
T 2gw8_A 12 PFKLDDVREALTEIGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKIKIELVLADDAVERAIDVIVEVARSGKI--G 89 (114)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEECC--------------CCEEEEEEEEEEEEGGGHHHHHHHHHHHHCCSST--T
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeecccCCCccceecccccccccceEEEEEEEcHHHHHHHHHHHHHHhCCCCC--C
Confidence 4567889998988887664 3333332 11 344556677899999999988764221 1
Q ss_pred cccCCCCcceEEEeeCCC
Q 017802 341 VINNNDLGLYVFASKPSS 358 (365)
Q Consensus 341 ~~~~~~~~~~~~~~~p~~ 358 (365)
+..+|++...+
T Consensus 90 -------dGkiFV~pVe~ 100 (114)
T 2gw8_A 90 -------DGKIFVLPVEE 100 (114)
T ss_dssp -------CCEEEEEEESC
T ss_pred -------CEEEEEEEhHH
Confidence 34566665544
No 34
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=34.97 E-value=1.3e+02 Score=23.01 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=44.5
Q ss_pred CChHHHHHHHHHHhCCCcEE---EEccccCcc-------------------eEEEEEcCCcHHHHHHHHHHHHHhcccCC
Q 017802 282 SCPELEELVNVCRNNGALGA---RLTGAGWGG-------------------CVVALVKESIDSQFILNLKEQFYQSRIDR 339 (365)
Q Consensus 282 s~peld~lv~~a~~~Ga~Ga---kisGaG~GG-------------------~vi~L~~~~~~~~~~~~l~~~y~~~~~~~ 339 (365)
....++.+.+++.+.|+-|. ...|-|--. -+..+++++.++.+++.+++..+....
T Consensus 13 r~~~~~~v~~AL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg~~-- 90 (116)
T 2ns1_B 13 KPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEFSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYTGKI-- 90 (116)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEECSSSCCCCEEETTEEECCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCCSST--
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEeeEeEcCcCCCccceecceeecccccEEEEEEEEcHHHHHHHHHHHHHHhcCCCC--
Confidence 34567889998888877663 444544311 344556777899999999998765322
Q ss_pred CcccCCCCcceEEEeeCCCc
Q 017802 340 GVINNNDLGLYVFASKPSSG 359 (365)
Q Consensus 340 ~~~~~~~~~~~~~~~~p~~G 359 (365)
| +..+|++...+-
T Consensus 91 G-------dGkiFV~pVe~~ 103 (116)
T 2ns1_B 91 G-------DGKIFVAELQRV 103 (116)
T ss_dssp T-------CCEEEEEEESCC
T ss_pred C-------CEEEEEEEhHHE
Confidence 1 345666655443
No 35
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=34.34 E-value=1e+02 Score=24.01 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHhCCCcEEE---EccccC-cc------------------eEEEEEcCCcHHHHHHHHHHHHHhcccCCC
Q 017802 283 CPELEELVNVCRNNGALGAR---LTGAGW-GG------------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 340 (365)
Q Consensus 283 ~peld~lv~~a~~~Ga~Gak---isGaG~-GG------------------~vi~L~~~~~~~~~~~~l~~~y~~~~~~~~ 340 (365)
...+|.+.+++.+.|+.|.. ..|-|- +| -+..+++++.++.+++.+.+..+.-.. |
T Consensus 10 p~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~a~TG~~--G 87 (118)
T 3t9z_A 10 PEKLECVKKALEERGFVGMTVTEVKGRGEQKGIRLQFRGREVEVDLLQKTKVEVVVSDDAVDEVVEAIVSSARTGKF--G 87 (118)
T ss_dssp GGGHHHHHHHHHHTTCCCEEEEEEEEEC-----------------CEEEEEEEEEECGGGHHHHHHHHHHHHCCSST--T
T ss_pred HHHHHHHHHHHHHCCCceEEEEeeEeecCcCCCccccccceeeecccceEEEEEEEChHHHHHHHHHHHHHhcCCCC--C
Confidence 45678999999888887743 344443 12 245556677899999999987653221 1
Q ss_pred cccCCCCcceEEEeeCCCcee
Q 017802 341 VINNNDLGLYVFASKPSSGAA 361 (365)
Q Consensus 341 ~~~~~~~~~~~~~~~p~~Ga~ 361 (365)
+..+|++...+-.|
T Consensus 88 -------DGkIFV~~Ve~~vr 101 (118)
T 3t9z_A 88 -------DGRIFVIPVEKSVK 101 (118)
T ss_dssp -------CCEEEEEECCEEEE
T ss_pred -------CeEEEEEEhHHeEE
Confidence 34677766554443
No 36
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=32.57 E-value=1.1e+02 Score=24.43 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHhCCCcEE---EEccccCc-c-------------------eEEEEEcCCcHHHHHHHHHHHHHh
Q 017802 283 CPELEELVNVCRNNGALGA---RLTGAGWG-G-------------------CVVALVKESIDSQFILNLKEQFYQ 334 (365)
Q Consensus 283 ~peld~lv~~a~~~Ga~Ga---kisGaG~G-G-------------------~vi~L~~~~~~~~~~~~l~~~y~~ 334 (365)
...++.+.+++.+.|+.|. ...|-|-. | -+..+++++.++.+++.+.+..+.
T Consensus 22 ~~k~~~V~~AL~~~G~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~~~t 96 (135)
T 2o66_A 22 PWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKDQVESVINTIIEGART 96 (135)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEEcHHHHHHHHHHHHHHhCC
Confidence 4567888888888887764 33444431 2 366677778899999999998765
No 37
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=31.91 E-value=97 Score=24.17 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHhCCCcEE---EEccccC--cc-----------------eEEEEEcCCcHHHHHHHHHHHHHhcccCCC
Q 017802 283 CPELEELVNVCRNNGALGA---RLTGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 340 (365)
Q Consensus 283 ~peld~lv~~a~~~Ga~Ga---kisGaG~--GG-----------------~vi~L~~~~~~~~~~~~l~~~y~~~~~~~~ 340 (365)
...++.+.+++.+.|+.|. ...|-|- |. -+..+++++.++.+++.+.+..+.-.. |
T Consensus 10 p~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~kieivV~de~ve~vv~~I~~~a~TG~~--G 87 (119)
T 3ncq_A 10 AEKFPEVKAALEERGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLIVNSAFTGSP--G 87 (119)
T ss_dssp TTTHHHHHHHHHHTTCCCEEEEEEEEECSTTTTCBCSSSSCBCCCCEEEEEEEEEECGGGHHHHHHHHHHHHCCSST--T
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcCCCC--C
Confidence 4567899999999887774 4445553 21 245567777899999999987654221 1
Q ss_pred cccCCCCcceEEEeeCCCceee
Q 017802 341 VINNNDLGLYVFASKPSSGAAK 362 (365)
Q Consensus 341 ~~~~~~~~~~~~~~~p~~Ga~v 362 (365)
+..+|++...+-.||
T Consensus 88 -------DGkIFV~~Ve~~vrI 102 (119)
T 3ncq_A 88 -------DGKIFIIPVEDVVRI 102 (119)
T ss_dssp -------CCEEEEEECSEEEET
T ss_pred -------CCEEEEEEhHheEEe
Confidence 346777665544443
No 38
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=31.59 E-value=1.1e+02 Score=23.20 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHhCCCcEEE---EccccC-cc------------------eEEEEEcCCcHHHHHHHHHHHHHh
Q 017802 283 CPELEELVNVCRNNGALGAR---LTGAGW-GG------------------CVVALVKESIDSQFILNLKEQFYQ 334 (365)
Q Consensus 283 ~peld~lv~~a~~~Ga~Gak---isGaG~-GG------------------~vi~L~~~~~~~~~~~~l~~~y~~ 334 (365)
...++.+.+++.+.|+-|.. ..|-|- +| -+..+++++.++.+++.+++..+.
T Consensus 10 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~t 83 (112)
T 1hwu_A 10 PFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDKVVEQAVDAIIKAART 83 (112)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccccccccccceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 45678899988888876643 344443 12 344556667899999999988754
No 39
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=22.38 E-value=1.2e+02 Score=23.52 Aligned_cols=53 Identities=23% Similarity=0.371 Sum_probs=35.8
Q ss_pred CChHHHHHHHHHHhCCCcEE---EEccccCcc-----------eEEEEEcCCcHHHHHHHHHHHHHh
Q 017802 282 SCPELEELVNVCRNNGALGA---RLTGAGWGG-----------CVVALVKESIDSQFILNLKEQFYQ 334 (365)
Q Consensus 282 s~peld~lv~~a~~~Ga~Ga---kisGaG~GG-----------~vi~L~~~~~~~~~~~~l~~~y~~ 334 (365)
..+.+|.+++++.+.|+-|. ...|-|-.+ -+..+++++.++.+++.+.+..+.
T Consensus 33 r~~k~e~V~~aL~~~Gi~G~TV~~V~G~G~q~~~t~~~~g~kv~IeiVv~de~ve~vv~~I~~~~~t 99 (119)
T 2cz4_A 33 ESLLEKRLVEEVKRLGAKGYTITPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYFP 99 (119)
T ss_dssp EGGGHHHHHHHHHHTTCCCCEEEEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHhCCCCcEEEcCCEEecCCCCccccccCCCEEEEEEECHHHHHHHHHHHHHHhcC
Confidence 35677899999998877664 334444311 355566667899999999876543
No 40
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=21.05 E-value=2.8e+02 Score=21.22 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHhCCCcEE---EEccccCc-c------------------eEEEEEcCCcHHHHHHHHHHHHHhcccCCC
Q 017802 283 CPELEELVNVCRNNGALGA---RLTGAGWG-G------------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 340 (365)
Q Consensus 283 ~peld~lv~~a~~~Ga~Ga---kisGaG~G-G------------------~vi~L~~~~~~~~~~~~l~~~y~~~~~~~~ 340 (365)
...++.+.+++.+.|+.|. ...|-|-- | -+..+++++.++.+++.+.+..+.-.. |
T Consensus 10 p~kl~~vk~AL~~~G~~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~~ve~vv~~I~~~a~Tg~~--G 87 (116)
T 4aff_A 10 PFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEN--G 87 (116)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEECCCCC------CCCSSCCCCEEEEEEEEEECGGGHHHHHHHHHHHHCCSST--T
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeEcccCCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcCCCC--C
Confidence 4567888888888887663 44455532 2 244556677899999999987653221 1
Q ss_pred cccCCCCcceEEEeeCCCceee
Q 017802 341 VINNNDLGLYVFASKPSSGAAK 362 (365)
Q Consensus 341 ~~~~~~~~~~~~~~~p~~Ga~v 362 (365)
+..+|++...+-.||
T Consensus 88 -------DGkIFV~~Ve~~vrI 102 (116)
T 4aff_A 88 -------DGKIFVSPVDQTIRI 102 (116)
T ss_dssp -------CEEEEEEECSCCBCT
T ss_pred -------CeEEEEEEhHHeEEe
Confidence 446777766554443
Done!