RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017802
(365 letters)
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 625 bits (1613), Expect = 0.0
Identities = 259/340 (76%), Positives = 293/340 (86%), Gaps = 4/340 (1%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSG 85
GSGLSSS A VCS+ +A+MAA G+ KKE+AQ TC+CE+ IGTQSGGMDQAISIMA+ G
Sbjct: 161 GSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQG 220
Query: 86 FAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145
A+LIDFNP+R TDVQLPAGGTFV+A+SLAES KA+TAA+NYNNRVVECRL AIVLA+KL
Sbjct: 221 VAKLIDFNPVRATDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKL 280
Query: 146 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLT 205
GM +EAISKVKTLSDVEGLCV+FA +GSSDP AVKE L + PYTA +IE+I E LT
Sbjct: 281 GMSAEEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGESLT 340
Query: 206 SIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLRLLCSEEDKLKKLG 265
SIF NS +SL VL AAK +KLHQRA HVYSEAKRVHAF+DTVSS+L SEE+KLKKLG
Sbjct: 341 SIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSL----SEEEKLKKLG 396
Query: 266 DLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFI 325
DLMN+SH+SCSVLYECSCPELEELV VCR+NGALGARLTGAGWGGC VALVKE+I QFI
Sbjct: 397 DLMNESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAGWGGCAVALVKEAIVPQFI 456
Query: 326 LNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF 365
L LKE+FY+SRI++GVI DLGLYVFASKPSSGAA KF
Sbjct: 457 LALKEKFYKSRIEKGVIKEEDLGLYVFASKPSSGAAILKF 496
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 171 bits (435), Expect = 9e-50
Identities = 95/343 (27%), Positives = 139/343 (40%), Gaps = 81/343 (23%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAK 83
+G+GLSSS A + +AL F + + K E+A++ E QF+G G MDQ S K
Sbjct: 126 IGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNCGIMDQLASAFGK 185
Query: 84 SGFAELIDFNPIRTTDVQLPAGG-TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLA 142
A L+D + V P GG + V+ +S K A S YN R EC A L
Sbjct: 186 KDHALLLDCRTLEYEPVPFPVGGVSIVIVNSNV---KRELADSEYNERRAECEEAAEFLG 242
Query: 143 IKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEE 202
+ + K+L DV + + A++ + +P
Sbjct: 243 VSI-----------KSLRDV------------TDEEFAALQAEIEVDP------------ 267
Query: 203 KLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLRLLCSEEDKLK 262
K+ +RA HV +E +RV + + LR L
Sbjct: 268 ----------------------KIARRARHVVTENQRV---LEAAKA-LR-----SGDLT 296
Query: 263 KLGDLMNDSHHSCSVLYECSCPELEELVN-VCRNNGALGARLTGAGWGGCVVALVKESID 321
+ G+LMN+SH S YE +CPEL+ LV GA GAR+TGAG+GGCV+ALV
Sbjct: 297 EFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGAYGARMTGAGFGGCVIALVPNDDV 356
Query: 322 SQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 364
+ E++ + L + + S GA
Sbjct: 357 EAVAEAVAEEYEKVT---------GLKAAFYVVEASQGAGVCD 390
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase. Galactokinase is a member of
the GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase) and shares
with them an amino-terminal domain probably related to
ATP binding.The galactokinases found by This model are
divided into two sets. Prokaryotic forms are generally
shorter. The eukaryotic forms are longer because of
additional central regions and in some cases are known
to be bifunctional, with regulatory activities that are
independent of galactokinase activity [Energy
metabolism, Sugars].
Length = 386
Score = 151 bits (383), Expect = 3e-42
Identities = 102/342 (29%), Positives = 140/342 (40%), Gaps = 85/342 (24%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAK 83
GSGLSSS AF C+ L + + K+I E F+G G MDQA S++ K
Sbjct: 121 TGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVNCGIMDQAASVLGK 180
Query: 84 SGFAELIDFNPIRTTDVQLPAGG-TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLA 142
A L++ ++ T + P G FV+A++ +K A SNYN R EC A LA
Sbjct: 181 EDHALLVECRSLKATPFKFPQLGIAFVIANTN---VKRTLAPSNYNTRRQECTTAANFLA 237
Query: 143 IKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEE 202
L D Y A I ++T+
Sbjct: 238 ATD----------KGALRDF-------------------------MNEYFARYIARLTK- 261
Query: 203 KLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV----HAFKDTVSSNLRLLCSEE 258
+ L +RA HV SE RV A KD
Sbjct: 262 ------------MLPLVE-------ERAKHVVSENLRVLKAVKAMKD------------N 290
Query: 259 DKLKKLGDLMNDSHHSCSVLYECSCPELEELV-NVCRNNGALGARLTGAGWGGCVVALVK 317
D K+ G LMN+SH SC YEC+CPE++ELV + NG+ G+R+TGAG+GGC V LV
Sbjct: 291 D-FKQFGALMNESHASCDDDYECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVP 349
Query: 318 ESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSG 359
+ + ++ Y + +L YV SKP +G
Sbjct: 350 NENVDKVRQAVADK-YPKKTGL------ELTFYVIVSKPGAG 384
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional.
Length = 387
Score = 104 bits (262), Expect = 4e-25
Identities = 86/324 (26%), Positives = 127/324 (39%), Gaps = 90/324 (27%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAKS 84
G+GLSSS + + V L F +++ + E+ +L + E +FIG SG MDQ M K
Sbjct: 124 GAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEFIGVNSGIMDQFAIGMGKK 183
Query: 85 GFAELIDFNPIRTTDVQLPAGGTFVV------AHSLAESLKAITAASNYNNRVVECRLTA 138
A L+D N + V L G +V LA+S YN R EC
Sbjct: 184 DHAILLDCNTLEYEYVPLDLGDYVIVIMNTNKRRELADS--------KYNERRAEC---- 231
Query: 139 IVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEK 198
++A+ +++ D++ L L E+
Sbjct: 232 -----------EKALEELQKKLDIKSLG--------------------------ELTEEE 254
Query: 199 ITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV----HAFKDTVSSNLRLL 254
E ++ K RA H +E +R A K
Sbjct: 255 FDEYS------------YLIKDETLLK---RARHAVTENQRTLKAVKALKA--------- 290
Query: 255 CSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVC-RNNGALGARLTGAGWGGCVV 313
L+K G LMN SH S YE + EL+ LV + G LGAR+TGAG+GGC +
Sbjct: 291 ----GDLEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQEGVLGARMTGAGFGGCAI 346
Query: 314 ALVKESIDSQFILNLKEQFYQSRI 337
A+VK+ F N+ + Y+ +I
Sbjct: 347 AIVKKDKVEAFKENVGKA-YEEKI 369
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional.
Length = 382
Score = 84.2 bits (209), Expect = 5e-18
Identities = 86/324 (26%), Positives = 124/324 (38%), Gaps = 90/324 (27%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAK 83
G+GLSSS + + + + + EIA E E QF+G G MDQ IS + K
Sbjct: 123 QGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVGCNCGIMDQLISALGK 182
Query: 84 SGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 143
A LID + T V +P G V+ +S ++K S YN R +C A
Sbjct: 183 KDHALLIDCRSLETKAVPMPEGVAVVIINS---NVKRGLVDSEYNTRRQQCETAA----- 234
Query: 144 KLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEK 203
VK L DV F DPV A
Sbjct: 235 --------RFFGVKALRDVT--LEQFNAVAAELDPVVA---------------------- 262
Query: 204 LTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLRLLCSEEDKLKK 263
+RA HV +E R +++ LK+
Sbjct: 263 ------------------------KRARHVITENARTLEAASALAAG---------DLKR 289
Query: 264 LGDLMNDSHHSCSVLYECSCPELEELV----NVCRNNGALGARLTGAGWGGCVVAL---- 315
+G+LM +SH S +E + P+++ LV V + G G R+TG G+GGC+VAL
Sbjct: 290 MGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDQG--GVRMTGGGFGGCIVALVPEE 347
Query: 316 ----VKESIDSQF--ILNLKEQFY 333
V++++ Q+ LKE FY
Sbjct: 348 LVEAVRQAVAEQYEAKTGLKETFY 371
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional.
Length = 351
Score = 78.9 bits (195), Expect = 2e-16
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 226 LHQRAAHVYSEAKRVHAFKDTVSSNLRLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPE 285
L +RA +V E +RV +D + +E ++ LG+L+ +SH + YE SC E
Sbjct: 231 LRKRAGYVLRENERVLKVRDAL---------KEGDIETLGELLTESHWDLADNYEVSCEE 281
Query: 286 LEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 333
L+ V GA GARLTGAG+GG +ALV + L E++
Sbjct: 282 LDFFVEFALELGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEYK 329
Score = 63.1 bits (154), Expect = 4e-11
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAK 83
+G+GLSSS + + AL A+ + + K E+A L E E +F+G G MDQ K
Sbjct: 97 IGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQFAVAFGK 156
Query: 84 SGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVEC 134
A +D + V P +V + +K A+S YN R EC
Sbjct: 157 KDHAIFLDTMTLEYEYVPFPEDYEILVFDT---GVKRELASSEYNERRQEC 204
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase.
Length = 423
Score = 74.5 bits (183), Expect = 1e-14
Identities = 75/300 (25%), Positives = 115/300 (38%), Gaps = 71/300 (23%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAKS 84
SGLSSS A + +AL A + V ++ +L E +++G ++G +DQ+ ++++
Sbjct: 143 SSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRLIENEYLGLRNGILDQSAILLSRY 202
Query: 85 GFAELIDFNPIRTTDVQLPAGGT-----FVVAHSLAESLKAITAASNYNNRVVECRLTAI 139
G +D + V L F + + + A+T YN RV EC+ A
Sbjct: 203 GCLTFMDCKTLDHKLVSLQFQQPGGEKPFKILLAFSGLRHALTNKPGYNLRVSECQEAAR 262
Query: 140 VLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKI 199
L G E + L +VE E Y A
Sbjct: 263 FLLEASGNDELEPL-----LCNVE------------------------PEVYEAH----- 288
Query: 200 TEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHA-FKDTVSSNLRLLCSEE 258
+ KL ++ A +RA H +SE RV + S NL
Sbjct: 289 -KCKLEAVLA------------------RRAEHYFSENMRVIKGVEAWASGNLE------ 323
Query: 259 DKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVC-RNNGALGARLTGAGWGGCVVALVK 317
+ G L++ S S YEC C L +L + + G GAR +GAG+ GC VA V
Sbjct: 324 ----EFGKLISASGLSSIENYECGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVD 379
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
Length = 307
Score = 68.9 bits (169), Expect = 4e-13
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 7/64 (10%)
Query: 257 EEDKLKKLGDLMNDSHHSCSVLYEC---SCPELEELVNVCRNNGALGARLTGAGWGGCVV 313
+ ++LG+LMN + L + S PEL+ELV R+ GALGA+LTGAG GGC++
Sbjct: 221 QTGDFEELGELMNINQG----LLKALGVSTPELDELVEAARSLGALGAKLTGAGGGGCII 276
Query: 314 ALVK 317
AL K
Sbjct: 277 ALAK 280
Score = 43.5 bits (103), Expect = 1e-04
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 84
+G+GL SS A + AL A FGVE+ +E+A+L + E + ++ G+D A
Sbjct: 94 IGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKASGIDIATITY--G 151
Query: 85 GFAELIDFNPIRTTDVQLPAGGTFVVAH 112
G +++ GT V+
Sbjct: 152 GLVAFKKGFDFEK--LEIELLGTLVIGD 177
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional.
Length = 328
Score = 67.6 bits (165), Expect = 1e-12
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 257 EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 316
++ L ++G+LMN +H C L SC EL+ +V CR GALGA+++G G GG VVAL
Sbjct: 235 QKGNLFRVGELMNANHDLCQKL-TVSCRELDSIVQTCRTYGALGAKMSGTGRGGLVVALA 293
Query: 317 KES 319
Sbjct: 294 ASE 296
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase. This model represents
mevalonate kinase, the third step in the mevalonate
pathway of isopentanyl pyrophosphate (IPP) biosynthesis.
IPP is a common intermediate for a number of pathways
including cholesterol biosynthesis. This model covers
enzymes from eukaryotes, archaea and bacteria. The
related enzyme from the same pathway, phosphmevalonate
kinase, serves as an outgroup for this clade. Paracoccus
exhibits two genes within the
phosphomevalonate/mevalonate kinase family, one of which
falls between trusted and noise cutoffs of this model.
The degree of divergence is high, but if the trees
created from this model are correct, the proper names of
these genes have been swapped [Central intermediary
metabolism, Other].
Length = 274
Score = 66.5 bits (163), Expect = 2e-12
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 7/62 (11%)
Query: 257 EEDKLKKLGDLMNDSH---HSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVV 313
E+ ++ LG+LMN + + V S P+L++LV + R GALGA+LTGAG GGC++
Sbjct: 217 EDGDVESLGELMNINQGLLKALGV----SHPKLDQLVEIARKAGALGAKLTGAGGGGCMI 272
Query: 314 AL 315
AL
Sbjct: 273 AL 274
Score = 43.4 bits (103), Expect = 7e-05
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSG 85
G GL SS A + AL FG E+ K+E+A+L E E+ + G+D A S G
Sbjct: 91 GRGLGSSAAVAVALIRALADYFGSELSKEELAELANEAEKIAHGKPSGIDTATSTS--GG 148
Query: 86 FAELIDFNPIRTTDVQLPAGGTFVVAHS 113
T + L G FV+A +
Sbjct: 149 PVYFEKGEGEFTKLISLD--GYFVIADT 174
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional.
Length = 363
Score = 65.7 bits (160), Expect = 6e-12
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 204 LTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLRLLCSEEDKLKK 263
++S+ A L L A +RA HV +E +RV F ++ +
Sbjct: 221 VSSLRAVQDRGLAALGAIADPIDARRARHVLTENQRVLDFAAALADS---------DFTA 271
Query: 264 LGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 319
G L+ SH S +E + ++ + + GALGAR+TG G+GGCV+ALV
Sbjct: 272 AGQLLTASHASMRDDFEITTERIDLIADSAVRAGALGARMTGGGFGGCVIALVPAD 327
Score = 55.6 bits (134), Expect = 1e-08
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAK 83
+GSGLSSS A C+ A+ AA G + + E A+L E +++G +G +DQ ++
Sbjct: 102 IGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQLAALFGA 161
Query: 84 SGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 143
A LIDF + V VV + + A Y R C A L +
Sbjct: 162 PKTALLIDFRDLTVRPVAFDPDAAGVVLLLMDSRARHRHAGGEYAARRASCERAAADLGV 221
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal. This family
includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 86
Score = 60.2 bits (146), Expect = 9e-12
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 261 LKKLGDLMNDSHHSC--SVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE 318
L+ LG+L+N++ S + PEL+EL+ R GALGA+L+G+G G V AL K+
Sbjct: 10 LELLGELLNENALSLEPLLYLGILSPELDELLEELRELGALGAKLSGSGGGPTVFALFKD 69
Query: 319 SIDSQFILN-LKEQFYQ 334
D++ + L+E +
Sbjct: 70 EEDAEEVAEALREAYPL 86
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain. This
family includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 67
Score = 55.3 bits (134), Expect = 3e-10
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIM 81
LG+GL SS A + +AL FG+ + K+E+A+L E E IG S G D A S+
Sbjct: 10 LGAGLGSSAALAVALLLALNELFGLPLSKEELARLALEAEGAIGVNS-GDDVAASVY 65
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional.
Length = 302
Score = 58.5 bits (142), Expect = 9e-10
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 259 DKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 316
LG+LMN + L S EL EL+ R GALGA++TGAG GGC+VAL
Sbjct: 211 GDYVSLGELMNINQGLLDAL-GVSTKELSELIYAARTAGALGAKITGAGGGGCMVALA 267
Score = 38.1 bits (89), Expect = 0.005
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIM 81
GSGL SS A ++ AL G+ + +EIA+L + E + + D +S M
Sbjct: 87 GSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGAASPTDTYVSTM 142
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional.
Length = 468
Score = 56.0 bits (135), Expect = 1e-08
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 253 LLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELE---ELVNVCRNNGALGARLTGAGWG 309
L S E++ +K G+++N H L + + PEL+ EL+N G G R+ G G+G
Sbjct: 354 LPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELIN--EEKGVAGGRMMGGGFG 411
Query: 310 GCVVALVKESIDSQFILNLKEQF 332
GC++ L+K++ + + +++E+F
Sbjct: 412 GCIILLLKKNAVDRVVAHVREKF 434
Score = 30.6 bits (69), Expect = 1.5
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 29/86 (33%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEV---------------------PKKEIAQLTCEC 63
+G+G+S+S +F VAL+ A V K+E+ +L +
Sbjct: 145 MGAGMSASASF----GVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQA 200
Query: 64 E----QFIGTQSGGMDQAISIMAKSG 85
+F G G MDQ IS A+
Sbjct: 201 RRIETEFCGVNVGIMDQFISAFAEED 226
>gnl|CDD|226917 COG4542, PduX, Protein involved in propanediol utilization, and
related proteins (includes coumermycin biosynthetic
protein), possible kinase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 293
Score = 37.1 bits (86), Expect = 0.010
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 26 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 64
G G++SSTA + ++ A G E+ + EIA+L E
Sbjct: 95 GKGMASSTADLVATARATARFLGRELRESEIAKLCVSIE 133
>gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and
mevalonate kinase [General function prediction only].
Length = 333
Score = 33.9 bits (78), Expect = 0.12
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 244 KDTVSSNLRLLCSEEDKLKK---------LGDLMNDSHHSCSVLYE-CSCPELEELVNVC 293
+ L + + ++K G +++ + L S ++ + +
Sbjct: 216 DEETLEALHEMKALAYEMKDALVRNDIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELA 275
Query: 294 RNNGALGARLTGAGWGGCVVALVKES 319
NGA G +L+GAG GG ++ S
Sbjct: 276 LKNGAYGGKLSGAGGGGFLLFFCDPS 301
Score = 29.7 bits (67), Expect = 2.3
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 26 GSGLSSSTAFVCSSTVALMAAF----GVEVPKKEIAQLTCECEQFIGTQSGG-MDQAISI 80
GSGL SS+AFV VAL+ A G + E+A+ E E+ GG DQ
Sbjct: 101 GSGLGSSSAFV----VALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQ---Y 153
Query: 81 MAKSGFAELIDFNP 94
A G ++F
Sbjct: 154 AAAFGGFNFMEFRG 167
>gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase;
Provisional.
Length = 693
Score = 33.9 bits (79), Expect = 0.14
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA 57
L S SSS A VC S++ALM A GV + K +A
Sbjct: 432 LESNGSSSMASVCGSSLALMDA-GVPI-KAPVA 462
>gnl|CDD|224599 COG1685, COG1685, Archaeal shikimate kinase [Amino acid transport
and metabolism / Coenzyme metabolism].
Length = 278
Score = 32.7 bits (75), Expect = 0.27
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 59
+GSGL SS+A + A++ A G E+ EI +L
Sbjct: 81 VGSGLKSSSAASNALVKAVLKALGEEIDDFEILRL 115
>gnl|CDD|206769 cd11364, RNase_PH_PNPase_2, Polyribonucleotide
nucleotidyltransferase, repeat 2. Polyribonucleotide
nucleotidyltransferase (PNPase) is a member of the
RNase_PH family, named after the bacterial Ribonuclease
PH, a 3'-5' exoribonuclease. Structurally, all members
of this family form hexameric rings. In the case of
PNPase the complex is a trimer, since each monomer
contains two tandem copies of the domain. PNPase is
involved in mRNA degradation in a 3'-5' direction and in
quality control of ribosomal RNA precursors, with the
second repeat containing the active site. PNPase is part
of the RNA degradosome complex and binds to the
scaffolding domain of the endoribonuclease RNase E.
Length = 223
Score = 32.1 bits (74), Expect = 0.34
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA 57
L S SSS A VC ++ALM A GV + K +A
Sbjct: 110 LESNGSSSMASVCGGSLALMDA-GVPI-KAPVA 140
>gnl|CDD|234271 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase.
Members of this protein family are polyribonucleotide
nucleotidyltransferase, also called polynucleotide
phosphorylase. Some members have been shown also to have
additional functions as guanosine pentaphosphate
synthetase and as poly(A) polymerase (see model
TIGR02696 for an exception clade, within this family)
[Transcription, Degradation of RNA].
Length = 684
Score = 32.1 bits (74), Expect = 0.55
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 30 SSSTAFVCSSTVALMAAFGV 49
SSS A VC ++ALM A GV
Sbjct: 433 SSSMASVCGGSLALMDA-GV 451
>gnl|CDD|237379 PRK13412, fkp, bifunctional
fucokinase/L-fucose-1-P-guanylyltransferase;
Provisional.
Length = 974
Score = 31.7 bits (72), Expect = 0.67
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 26 GSGLSSSTAFVCSSTV--ALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQA 77
GSGL +S+ + ++TV A+ G+ K EI T EQ + T G DQ
Sbjct: 738 GSGLGTSS--ILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQY 789
>gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase
(polynucleotide phosphorylase) [Translation, ribosomal
structure and biogenesis].
Length = 692
Score = 31.4 bits (72), Expect = 0.88
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVP-KKEIA 57
L S SSS A VC ++ALM A VP K +A
Sbjct: 430 LESNGSSSMASVCGGSLALMDA---GVPIKAPVA 460
>gnl|CDD|215363 PLN02677, PLN02677, mevalonate kinase.
Length = 387
Score = 31.0 bits (70), Expect = 0.94
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 252 RLLCSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGA--LGARLTGAGWG 309
+ +E+KLK+L + MN L +C + V R L ++LTGAG G
Sbjct: 287 LSITEKEEKLKELME-MNQG------LLQCMGVSHSSIETVLRTTLKYKLVSKLTGAGGG 339
Query: 310 GCVVALV 316
GCV+ L+
Sbjct: 340 GCVLTLL 346
Score = 30.2 bits (68), Expect = 1.8
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 14/69 (20%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFG-------------VEVPKKEIA-QLTCECEQFIGTQ 70
LGSGL SS AF + + AL+AA ++ E+ + E E+ I +
Sbjct: 140 LGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGK 199
Query: 71 SGGMDQAIS 79
G+D +S
Sbjct: 200 PSGIDNTVS 208
>gnl|CDD|234906 PRK01123, PRK01123, shikimate kinase; Provisional.
Length = 282
Score = 30.6 bits (70), Expect = 1.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 59
L SGL SS+A ++ +A + A G ++ +I +L
Sbjct: 86 LASGLKSSSAAANATVLATLDALGEDLDDLDILRL 120
>gnl|CDD|215248 PLN02451, PLN02451, homoserine kinase.
Length = 370
Score = 30.5 bits (69), Expect = 1.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 64
LGSGL SS A ++ VA+ FG + K ++ E E
Sbjct: 145 LGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESE 184
>gnl|CDD|216923 pfam02190, LON, ATP-dependent protease La (LON) domain. This
domain has been shown to be part of the PUA superfamily.
Length = 191
Score = 29.7 bits (67), Expect = 1.6
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 180 FAVKEFLRKEPYTALDIEKITEEKLTSIF----ANSSSSLDVLNAAKQYKLHQRAAHVYS 235
F + E ++EPY ++E + EE+L + A ++ + L
Sbjct: 87 FRILELEQEEPYLVAEVEDLPEEELEELLEALEALVKELIEKIKELLPLLLPLELLLKID 146
Query: 236 EAKRVHAFKDTVSSNLRLLCSEEDKLK 262
+ + D ++S L L S E+K +
Sbjct: 147 DIEDPGRLADLIASLLPL--SPEEKQE 171
>gnl|CDD|233637 TIGR01920, Shik_kin_archae, shikimate kinase. This model
represents the shikimate kinase (SK) gene found in
archaea which is only distantly related to homoserine
kinase (thrB) and not atr all to the bacterial SK
enzyme. The SK from M. janaschii has been overexpressed
in E. coli and characterized. SK catalyzes the fifth
step of the biosynthesis of chorismate from
D-erythrose-4-phosphate and phosphoenolpyruvate [Amino
acid biosynthesis, Aromatic amino acid family].
Length = 261
Score = 30.1 bits (68), Expect = 1.8
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 59
GSGL SS+A V + A++ A GVE+ +I +L
Sbjct: 75 AGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRL 109
>gnl|CDD|223099 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid
metabolism].
Length = 245
Score = 29.6 bits (67), Expect = 2.5
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 144 KLGMKPQEAISKVKTLS-DVEGLCVAFACKNGS-SDPVFAVKEFLRKEPYTALDIEKITE 201
+L + +EAI K + + + GL + A G + V AV++ L E I E
Sbjct: 114 RLPEEVREAIEKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDVAAGKLSPEDIDE 173
Query: 202 EKLTS 206
E ++S
Sbjct: 174 ELISS 178
>gnl|CDD|234920 PRK01212, PRK01212, homoserine kinase; Provisional.
Length = 301
Score = 29.0 bits (66), Expect = 3.4
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 284 PELEELVNVCRNNGALGARLTGAGWGGCVVAL--------VKESIDSQFILNLKEQFYQS 335
P E+ GALGA ++GA G V AL V +++ F+ ++ +
Sbjct: 234 PGFAEVRQAALEAGALGAGISGA--GPTVFALCDKEDAEKVADALQKAFLQGIEGFVHVL 291
Query: 336 RIDRG 340
R+D
Sbjct: 292 RLDTA 296
>gnl|CDD|188029 TIGR00154, ispE, 4-diphosphocytidyl-2C-methyl-D-erythritol kinase.
Members of this family of GHMP kinases were previously
designated as conserved hypothetical protein YchB or as
isopentenyl monophosphate kinase. It is now known, in
tomato and E. coli, to encode
4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an
enzyme of the deoxyxylulose phosphate pathway of
terpenoid biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 294
Score = 29.0 bits (65), Expect = 3.6
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 284 PELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGV 341
E+ + +N G R++G+ G CV AL +++ +L ++ + +G
Sbjct: 229 TEVAQALNWLLEYGLAPERMSGS--GPCVFALFDMESEAEQVLEQAPEWLNGFVAKGY 284
>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed.
Length = 292
Score = 28.9 bits (66), Expect = 3.7
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 184 EFLRKE-PY-TALDIEKITEEKLTSIFAN 210
L E PY A++IEK E L I A
Sbjct: 201 RLLGDELPYSVAVEIEKFEERGLVRIEAT 229
>gnl|CDD|222027 pfam13288, DXPR_C, DXP reductoisomerase C-terminal domain. This is
the C-terminal domain of the
1-deoxy-D-xylulose-5-phosphate reductoisomerase enzyme.
This domain forms a left handed super-helix.
Length = 118
Score = 27.8 bits (63), Expect = 3.9
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 170 ACKNGSSDPVF-------AVKEFLRKE-PYTALDIEKITEEKLTSIFANSSSSL-DVLNA 220
A + G + P AV FL + + LDI +I E+ L + SL D+L A
Sbjct: 53 ALRAGGTAPAVLNAANEVAVAAFLEGKIGF--LDIARIVEKVLDAHEPIEPPSLEDILEA 110
>gnl|CDD|216392 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate
synthase. Previously known as uncharacterized protein
family UPF0015, a single member of this family has been
identified as an undecaprenyl diphosphate synthase.
Length = 222
Score = 28.3 bits (64), Expect = 5.3
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 165 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTS 206
L +A G + V AVK R L E I EE +
Sbjct: 116 LNIAL-NYGGRDEIVDAVKRLARDVADGKLSPEDIDEEVIEK 156
>gnl|CDD|223161 COG0083, ThrB, Homoserine kinase [Amino acid transport and
metabolism].
Length = 299
Score = 28.3 bits (64), Expect = 6.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 64
LG GL SS A + ++ A G+ + K+E+ QL E E
Sbjct: 88 LGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIE 127
Score = 28.3 bits (64), Expect = 6.6
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 284 PELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGV 341
P E+ GALGA L+GAG V AL ES D++ L E+ Y+ I V
Sbjct: 230 PGYAEVREAALEAGALGATLSGAGPT--VFALADES-DAEKAAALLEELYEQGIKGRV 284
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 28.0 bits (62), Expect = 8.8
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 201 EEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLRLLCSEE-D 259
E+ + S LN K+YK+H++ HV + + +L + +
Sbjct: 557 EQLVQSTEIKLDELKVDLNR-KRYKIHKQVIHVIDITSKFKINIQSSLEDLENELGKVIE 615
Query: 260 KLKKL 264
+L+ L
Sbjct: 616 ELRNL 620
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.132 0.375
Gapped
Lambda K H
0.267 0.0880 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,792,884
Number of extensions: 1673601
Number of successful extensions: 1587
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1560
Number of HSP's successfully gapped: 61
Length of query: 365
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 267
Effective length of database: 6,590,910
Effective search space: 1759772970
Effective search space used: 1759772970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.6 bits)