Query 017805
Match_columns 365
No_of_seqs 49 out of 51
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 03:35:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05708 DUF830: Orthopoxvirus 98.5 4.7E-07 1E-11 76.8 8.4 99 212-327 2-101 (158)
2 PRK10030 hypothetical protein; 98.3 2.4E-06 5.1E-11 78.2 9.2 104 209-332 18-121 (197)
3 PRK11470 hypothetical protein; 98.0 2.7E-05 5.9E-10 72.4 9.0 106 209-332 6-111 (200)
4 PRK11479 hypothetical protein; 97.2 0.0012 2.6E-08 64.2 8.0 100 205-329 58-160 (274)
5 PF05382 Amidase_5: Bacterioph 76.9 7.3 0.00016 35.1 6.1 65 210-298 74-138 (145)
6 PF05257 CHAP: CHAP domain; I 75.4 8.5 0.00018 31.9 5.8 43 208-264 59-102 (124)
7 PF01436 NHL: NHL repeat; Int 70.6 7.2 0.00016 25.4 3.4 19 246-265 6-24 (28)
8 TIGR02219 phage_NlpC_fam putat 68.5 6.7 0.00014 33.8 3.7 35 206-256 71-105 (134)
9 COG3863 Uncharacterized distan 53.4 34 0.00073 33.2 5.8 102 206-335 73-180 (231)
10 PF07646 Kelch_2: Kelch motif; 49.3 17 0.00036 25.7 2.4 18 240-260 1-18 (49)
11 PRK15231 fimbrial adhesin prot 44.6 24 0.00053 32.5 3.3 92 146-266 10-106 (150)
12 PF13418 Kelch_4: Galactose ox 38.4 31 0.00066 23.9 2.4 18 240-259 1-18 (49)
13 smart00739 KOW KOW (Kyprides, 33.0 81 0.0018 19.5 3.5 23 212-250 2-24 (28)
14 PF12075 KN_motif: KN motif; 32.8 17 0.00037 26.8 0.3 6 321-326 6-11 (39)
15 PF07313 DUF1460: Protein of u 32.5 1E+02 0.0022 29.6 5.5 58 209-282 151-208 (216)
16 COG5008 PilU Tfp pilus assembl 32.0 25 0.00054 36.0 1.4 109 134-250 110-232 (375)
17 PF01344 Kelch_1: Kelch motif; 30.9 50 0.0011 22.4 2.4 31 240-273 1-31 (47)
18 PF13964 Kelch_6: Kelch motif 29.1 56 0.0012 22.8 2.5 21 241-264 2-22 (50)
19 PF07494 Reg_prop: Two compone 28.8 50 0.0011 20.9 2.0 13 248-260 10-22 (24)
20 PF02362 B3: B3 DNA binding do 28.2 1.1E+02 0.0024 23.8 4.3 48 206-262 4-51 (100)
21 PF13387 DUF4105: Domain of un 28.1 1.5E+02 0.0032 26.5 5.6 86 240-328 32-133 (176)
22 cd03474 Rieske_T4moC Toluene-4 27.6 1E+02 0.0023 24.8 4.2 37 207-262 5-41 (108)
23 cd03531 Rieske_RO_Alpha_KSH Th 26.2 89 0.0019 26.1 3.6 101 208-343 7-115 (115)
24 PF00877 NLPC_P60: NlpC/P60 fa 23.9 47 0.001 26.6 1.5 28 206-249 46-73 (105)
25 TIGR03047 PS_II_psb28 photosys 22.9 84 0.0018 27.7 2.9 44 228-274 33-80 (109)
26 cd03477 Rieske_YhfW_C YhfW fam 22.6 1.5E+02 0.0033 24.0 4.2 37 209-264 5-41 (91)
27 PF04970 LRAT: Lecithin retino 21.4 4.3E+02 0.0092 22.1 6.8 92 209-326 4-106 (125)
28 PF14133 DUF4300: Domain of un 21.2 73 0.0016 31.3 2.4 36 241-281 185-220 (250)
29 PF08972 DUF1902: Domain of un 20.6 94 0.002 24.3 2.4 19 246-264 3-21 (54)
30 PF04473 DUF553: Transglutamin 20.3 86 0.0019 28.5 2.5 33 239-282 106-138 (153)
31 PF09652 Cas_VVA1548: Putative 20.2 65 0.0014 27.6 1.7 32 183-219 8-39 (93)
32 cd09011 Glo_EDI_BRP_like_23 Th 20.0 1.1E+02 0.0025 24.1 2.9 19 243-261 100-118 (120)
No 1
>PF05708 DUF830: Orthopoxvirus protein of unknown function (DUF830); PDB: 2IF6_B 3KW0_C.
Probab=98.51 E-value=4.7e-07 Score=76.80 Aligned_cols=99 Identities=21% Similarity=0.346 Sum_probs=72.0
Q ss_pred CCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeecCCCcEEEEEc-CCCCcccccceEecchhHHHHHHhccCCC
Q 017805 212 VHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGES-GHENEKGEEIIVVIPWDEWWELALKDDSN 290 (365)
Q Consensus 212 IhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES-~~~~~~~~~~Iq~~pweeW~~~~~kd~a~ 290 (365)
+++||.|...- . +.+...|.=+|++..||.+|.+.+.+++.+|+|+ -.. +++..++++|.. + +
T Consensus 2 l~~GDIil~~~---~-~~~s~~i~~~t~~~~~HvgI~~~~~~~~~~viea~~~~------Gv~~~~l~~~~~----~--~ 65 (158)
T PF05708_consen 2 LQTGDIILTRG---K-SSLSKAIRPVTSSPYSHVGIVIGDEGQEPYVIEATPGD------GVRLEPLSDFLK----R--N 65 (158)
T ss_dssp --TT-EEEEEE-----SCCHHHHHHHHTSS--EEEEEEEETTE-EEEEEEETTT------CEEEEECHHHHH----C--C
T ss_pred CCCeeEEEEEC---C-chHHHHHHHHhCCCCCEEEEEEecCCCceEEEEeccCC------CeEEeeHHHHhc----C--C
Confidence 58999998863 3 7789999999999999999999987788999999 333 699999999885 2 4
Q ss_pred CcEEEeeCChHHHhhcchHHHHHHHHhhcCCcceeee
Q 017805 291 PQIALLPLHPDVRAKFNSTAAWEYARSMSGKPYGYHN 327 (365)
Q Consensus 291 ~~ValLPL~pe~RakFN~TAAwef~~~~eG~PYGYhN 327 (365)
-+++++.+++. +..=...+|.+++++..|+||++-.
T Consensus 66 ~~~~V~r~~~~-~~~~~~~~~~~~a~~~~g~~Y~~~~ 101 (158)
T PF05708_consen 66 EKIAVYRLKDP-LSEEQRQKAAEFAKSYIGKPYDFNF 101 (158)
T ss_dssp CEEEEEEECCG-TTCHHHHHHHHHHHCCTTS-B-CC-
T ss_pred ceEEEEEECCC-CCHHHHHHHHHHHHHHcCCCccccc
Confidence 56888888877 3333345678899999999999863
No 2
>PRK10030 hypothetical protein; Provisional
Probab=98.34 E-value=2.4e-06 Score=78.22 Aligned_cols=104 Identities=19% Similarity=0.290 Sum_probs=79.6
Q ss_pred CCCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeecCCCcEEEEEcCCCCcccccceEecchhHHHHHHhccC
Q 017805 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKDD 288 (365)
Q Consensus 209 ~~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~~kd~ 288 (365)
..++++||.|-.+- + +.....|+.+|+|.-.|.+|..+. +|+.+|+|+- ..|+.+|+++|.+ +.
T Consensus 18 ~~~l~~GDlif~~g---~-~~~s~aI~~~T~s~~SHVGIi~~~-~~~~~ViEAv-------~~V~~~pL~~Fl~----~~ 81 (197)
T PRK10030 18 AWQPQTGDIIFQIS---R-SSQSKAIQLATHSDYSHTGMIVKR-NKKPYVFEAV-------GPVKYTPLKQWIA----HG 81 (197)
T ss_pred hcCCCCCCEEEEeC---C-CcHhHHHhHhhCCCCceEEEEEEE-CCcEEEEEec-------CceEEEEHHHHhh----cC
Confidence 34899999998873 3 456889999999999999999985 7999999994 2399999999985 33
Q ss_pred CCCcEEEeeCChHHHhhcchHHHHHHHHhhcCCcceeeeeeEEE
Q 017805 289 SNPQIALLPLHPDVRAKFNSTAAWEYARSMSGKPYGYHNMIFSW 332 (365)
Q Consensus 289 a~~~ValLPL~pe~RakFN~TAAwef~~~~eG~PYGYhN~iFsW 332 (365)
.+-++++..++..+.... -.++.+++++..|+||-+. |.|
T Consensus 82 ~~~~~~V~Rl~~~lt~~~-~~~li~~A~~~lGkpYD~~---f~~ 121 (197)
T PRK10030 82 EKGKYVVRRLENGLSVEQ-QQKLAQTAKRYLGKPYDFY---FSW 121 (197)
T ss_pred ccCcEEEEEeCCCCCHHH-HHHHHHHHHHHcCCCCCcc---ccc
Confidence 355788877765322211 3447889999999999864 655
No 3
>PRK11470 hypothetical protein; Provisional
Probab=98.01 E-value=2.7e-05 Score=72.44 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=80.2
Q ss_pred CCCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeecCCCcEEEEEcCCCCcccccceEecchhHHHHHHhccC
Q 017805 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKDD 288 (365)
Q Consensus 209 ~~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~~kd~ 288 (365)
+.++|+||.|-++--. ..+ -.|+-+|||...|..|..+-..++-+|+||--. .++.+|.++|++ ..
T Consensus 6 ~~~l~~GDLvF~~~~~---~~~-~aI~~aT~s~~sHvGII~~~~~~~~~VlEA~~~------~vr~TpLs~fi~----r~ 71 (200)
T PRK11470 6 PAEYEIGDIVFTCIGA---ALF-GQISAASNCWSNHVGIIIGHNGEDFLVAESRVP------LSTVTTLSRFIK----RS 71 (200)
T ss_pred cCCCCCCCEEEEeCCc---chh-HHHHhccCCccceEEEEEEEcCCceEEEEecCC------ceEEeEHHHHHh----cC
Confidence 4689999999998422 223 348888999999999988543568999999422 289999999995 34
Q ss_pred CCCcEEEeeCChHHHhhcchHHHHHHHHhhcCCcceeeeeeEEE
Q 017805 289 SNPQIALLPLHPDVRAKFNSTAAWEYARSMSGKPYGYHNMIFSW 332 (365)
Q Consensus 289 a~~~ValLPL~pe~RakFN~TAAwef~~~~eG~PYGYhN~iFsW 332 (365)
.+-++++-.|+..+++.= ..+|.++++++-|+||.+. |.|
T Consensus 72 ~~g~i~v~Rl~~~l~~~~-~~~~~~~A~~~lGkpYD~~---F~~ 111 (200)
T PRK11470 72 ANQRYAIKRLDAGLTEQQ-KQRIVEQVPSRLRKLYHTG---FKY 111 (200)
T ss_pred cCceEEEEEecCCCCHHH-HHHHHHHHHHHcCCCCCCc---cCC
Confidence 466799988875544411 3458899999999999985 666
No 4
>PRK11479 hypothetical protein; Provisional
Probab=97.20 E-value=0.0012 Score=64.24 Aligned_cols=100 Identities=21% Similarity=0.321 Sum_probs=77.2
Q ss_pred ccCCCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeecCCCcEEEEEcCCCCcccccceEecchhHHHHHH
Q 017805 205 ATINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELA 284 (365)
Q Consensus 205 ~~i~~~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~ 284 (365)
..|+.+++|+||.|..+.- +.+.-.|++.|++...|.+|.+- ||+ ++|+-. .+|+..|.++|..
T Consensus 58 ~~Vs~~~LqpGDLVFfst~----t~~S~~Ik~~T~s~~SHVgIylG--dg~--vIEA~g------~GVri~pL~~~~~-- 121 (274)
T PRK11479 58 KEITAPDLKPGDLLFSSSL----GVTSFGIRVFSTSSVSHVAIYLG--ENN--VAEATG------AGVQIVSLKKAIK-- 121 (274)
T ss_pred cccChhhCCCCCEEEEecC----CccccceecccCCCCcEEEEEec--CCe--EEEcCC------CCEEEEechhhhc--
Confidence 3688899999999998631 45677899999999999999985 443 799832 3599999999774
Q ss_pred hccCCCCcEEEe---eCChHHHhhcchHHHHHHHHhhcCCcceeeeee
Q 017805 285 LKDDSNPQIALL---PLHPDVRAKFNSTAAWEYARSMSGKPYGYHNMI 329 (365)
Q Consensus 285 ~kd~a~~~ValL---PL~pe~RakFN~TAAwef~~~~eG~PYGYhN~i 329 (365)
.+ -.|+.+ .|.+|.+++ +.+|+++..|.||=|-+.+
T Consensus 122 -~~---~~I~a~Rv~~lt~e~~~k-----l~~fa~~~lGy~YN~~gI~ 160 (274)
T PRK11479 122 -HS---DKLFALRVPDLTPQQATK-----ITAFANKIKDSGYNYRGIV 160 (274)
T ss_pred -cc---ceEEEEeCCCCCHHHHHH-----HHHHHHHhcCCCCCHHHHH
Confidence 22 236666 566666654 8899999999999987764
No 5
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=76.95 E-value=7.3 Score=35.08 Aligned_cols=65 Identities=20% Similarity=0.428 Sum_probs=42.4
Q ss_pred CCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeecCCCcEEEEEcCCCCcccccceEecchhHHHHHHhccCC
Q 017805 210 EDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKDDS 289 (365)
Q Consensus 210 ~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~~kd~a 289 (365)
.++|.||.+..++- |. ++...|||.|++. . +. +|.- +| +.++|.+++++..| ..+.
T Consensus 74 ~~~q~GDI~I~g~~-g~-----------S~G~~GHtgif~~-~-~~--iIhc---~y-~~~g~~~~~~~~~~----~~~~ 129 (145)
T PF05382_consen 74 WNLQRGDIFIWGRR-GN-----------SAGAGGHTGIFMD-N-DT--IIHC---NY-GANGIAINNYDWYW----YYNG 129 (145)
T ss_pred ccccCCCEEEEcCC-CC-----------CCCCCCeEEEEeC-C-Cc--EEEe---cC-CCCCeEecCCCeee----ecCC
Confidence 47999999987642 22 4556899999984 2 22 3332 22 78889999987755 4455
Q ss_pred CCcEEEeeC
Q 017805 290 NPQIALLPL 298 (365)
Q Consensus 290 ~~~ValLPL 298 (365)
.+-+-+-.|
T Consensus 130 ~~~~~~yr~ 138 (145)
T PF05382_consen 130 RPPVYVYRL 138 (145)
T ss_pred CCcEEEEEe
Confidence 555554443
No 6
>PF05257 CHAP: CHAP domain; InterPro: IPR007921 The CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain is a region between 110 and 140 amino acids that is found in proteins from bacteria, bacteriophages, archaea and eukaryotes of the Trypanosomidae family. Many of these proteins are uncharacterised, but it has been proposed that they may function mainly in peptidoglycan hydrolysis. The CHAP domain is found in a wide range of protein architectures; it is commonly associated with bacterial type SH3 domains and with several families of amidase domains. It has been suggested that CHAP domain containing proteins utilise a catalytic cysteine residue in a nucleophilic-attack mechanism [, ]. The CHAP domain contains two invariant residues, a cysteine and a histidine. These residues form part of the putative active site of CHAP domain containing proteins. Secondary structure predictions show that the CHAP domain belongs to the alpha + beta structural class, with the N-terminal half largely containing predicted alpha helices and the C-terminal half principally composed of predicted beta strands [, ]. Some proteins known to contain a CHAP domain are listed below: Bacterial and trypanosomal glutathionylspermidine amidases. A variety of bacterial autolysins. A Nocardia aerocolonigenes putative esterase. Streptococcus pneumoniae choline-binding protein D. Methanosarcina mazei protein MM2478, a putative chloride channel. Several phage-encoded peptidoglycan hydrolases. Cysteine peptidases belonging to MEROPS peptidase family C51 (D-alanyl-glycyl endopeptidase, clan CA). ; PDB: 2LRJ_A 2VPM_B 2VOB_B 2VPS_A 2K3A_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B ....
Probab=75.42 E-value=8.5 Score=31.88 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=32.1
Q ss_pred CCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeec-CCCcEEEEEcCCC
Q 017805 208 NPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKD-KEGNLWVGESGHE 264 (365)
Q Consensus 208 ~~~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd-~dGeL~v~ES~~~ 264 (365)
.....++||.+... ..++...||+++.... .+|.+.++|....
T Consensus 59 ~~~~P~~Gdivv~~--------------~~~~~~~GHVaIV~~v~~~~~i~v~e~N~~ 102 (124)
T PF05257_consen 59 TGSTPQPGDIVVWD--------------SGSGGGYGHVAIVESVNDGGTITVIEQNWG 102 (124)
T ss_dssp ECS---TTEEEEEE--------------ECTTTTT-EEEEEEEE-TTSEEEEEECSST
T ss_pred cCcccccceEEEec--------------cCCCCCCCeEEEEEEECCCCEEEEEECCcC
Confidence 45677899988875 3467889999999988 7799999999864
No 7
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=70.56 E-value=7.2 Score=25.40 Aligned_cols=19 Identities=37% Similarity=0.847 Sum_probs=14.5
Q ss_pred eEEeecCCCcEEEEEcCCCC
Q 017805 246 AVCLKDKEGNLWVGESGHEN 265 (365)
Q Consensus 246 av~Lrd~dGeL~v~ES~~~~ 265 (365)
-||+ +++|++||+||+..-
T Consensus 6 gvav-~~~g~i~VaD~~n~r 24 (28)
T PF01436_consen 6 GVAV-DSDGNIYVADSGNHR 24 (28)
T ss_dssp EEEE-ETTSEEEEEECCCTE
T ss_pred EEEE-eCCCCEEEEECCCCE
Confidence 3566 479999999987654
No 8
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=68.49 E-value=6.7 Score=33.80 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=24.9
Q ss_pred cCCCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeecCCCcE
Q 017805 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNL 256 (365)
Q Consensus 206 ~i~~~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL 256 (365)
.++.+++|+||+|... . ..|..++|..+.+ + +|++
T Consensus 71 ~v~~~~~qpGDlvff~-~-------------~~~~~~~HvGIy~-G-~g~~ 105 (134)
T TIGR02219 71 PVPCDAAQPGDVLVFR-W-------------RPGAAAKHAAIAA-S-PTRF 105 (134)
T ss_pred ccchhcCCCCCEEEEe-e-------------CCCCCCcEEEEEe-C-CCcE
Confidence 4566789999999664 2 2355688999887 3 6664
No 9
>COG3863 Uncharacterized distant relative of cell wall-associated hydrolases [Function unknown]
Probab=53.43 E-value=34 Score=33.23 Aligned_cols=102 Identities=23% Similarity=0.407 Sum_probs=60.9
Q ss_pred cCCCCCCCCCCEEEEEeecccCCchhhHHHhhc------CcCCcceeEEeecCCCcEEEEEcCCCCcccccceEecchhH
Q 017805 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVT------GAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDE 279 (365)
Q Consensus 206 ~i~~~dIhsGDfLaiskirgr~dG~d~li~W~t------Gs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pwee 279 (365)
+.|..-.+|||-++= ++--| +|. -|.| +.|-||..|-. + -|+ .+||..+. +++.++.-
T Consensus 73 ~~dr~v~~~gd~~~g-dyPTr-~g~----i~~t~~~~~~~~H~gHagmy~-~-a~~--~VEs~psG------Vr~v~~n~ 136 (231)
T COG3863 73 NLDRSVLQPGDILLG-DYPTR-GGA----IWLTDTFGNIVGHWGHAGMYI-G-AGQ--MVESWPSG------VRVVSVNM 136 (231)
T ss_pred hhhhhhcCCcchhhc-cCCCC-cce----EEEEcccccccccccceEEEE-c-CCc--EEeeccCc------eEEecchh
Confidence 455555677776543 22212 121 1332 55778888654 3 344 58987763 66666655
Q ss_pred HHHHHhccCCCCcEEEeeCChHHHhhcchHHHHHHHHhhcCCcceeeeeeEEEEec
Q 017805 280 WWELALKDDSNPQIALLPLHPDVRAKFNSTAAWEYARSMSGKPYGYHNMIFSWIDT 335 (365)
Q Consensus 280 W~~~~~kd~a~~~ValLPL~pe~RakFN~TAAwef~~~~eG~PYGYhN~iFsWIDT 335 (365)
|.. +||+- |-..--+.|.. ++|-.|+.+-.|+||-|. .|.-|.|
T Consensus 137 ~~~---~dn~i--V~~vsts~~qk-----~~AadWa~~kVG~PY~~n--f~n~~nt 180 (231)
T COG3863 137 ARN---ADNVI--VYRVSTSNDQK-----SKAADWALTKVGLPYDYN--FLNYVNT 180 (231)
T ss_pred hhc---ccceE--EEEEecchhhh-----HHHHHHHHhccCCcccce--eeeeccc
Confidence 552 56553 44444455543 688899999999999985 2445666
No 10
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=49.27 E-value=17 Score=25.66 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=14.4
Q ss_pred cCCcceeEEeecCCCcEEEEE
Q 017805 240 AFAGHTAVCLKDKEGNLWVGE 260 (365)
Q Consensus 240 s~aGHtav~Lrd~dGeL~v~E 260 (365)
.+.||+++++ ++||||+=
T Consensus 1 ~r~~hs~~~~---~~kiyv~G 18 (49)
T PF07646_consen 1 PRYGHSAVVL---DGKIYVFG 18 (49)
T ss_pred CccceEEEEE---CCEEEEEC
Confidence 3679999876 79999973
No 11
>PRK15231 fimbrial adhesin protein SefD; Provisional
Probab=44.56 E-value=24 Score=32.46 Aligned_cols=92 Identities=14% Similarity=0.235 Sum_probs=66.6
Q ss_pred HHhcceEEEEecccchhhhhhhhhccccccCccchhhccHHHHHhhcCCceeeccCCccccCCCCCCCCCCEEEEEeecc
Q 017805 146 VKQHGVSVFLMPSGMMGTLLSLIDILPLFSNSHWGQNANLAFLEKHMGATFEKRPQPWHATINPEDVHSGDFLAVSKIRG 225 (365)
Q Consensus 146 ik~~Gv~vFlm~~gm~gtl~sl~~~~plF~nt~wge~~Nl~FL~~~mG~~fe~R~~~~v~~i~~~dIhsGDfLaiskirg 225 (365)
|-+.=++||++-.|...++...-++ .|.+ . +.|| .=-+.+++|..|+-.||--
T Consensus 10 ~~~~~~~~~~~~~~~~Ss~sqA~el-~L~~------~-------~~~~-------------~~~~~l~dg~~laTGri~c 62 (150)
T PRK15231 10 IPKFIVSVFLIVTGFFSSTIKAQEL-KLMI------K-------INEA-------------VFYDRITSNKIIGTGHLFN 62 (150)
T ss_pred cccceeeEeeEeehhhhhhhhceee-EEEe------e-------cccc-------------chhhhccCCcEEeeeeEEe
Confidence 4455689999999877666554443 2211 0 1111 0126789999999999987
Q ss_pred cCCchhhHHHhhc----CcCCcceeEE-eecCCCcEEEEEcCCCCc
Q 017805 226 RWGGFETLEKWVT----GAFAGHTAVC-LKDKEGNLWVGESGHENE 266 (365)
Q Consensus 226 r~dG~d~li~W~t----Gs~aGHtav~-Lrd~dGeL~v~ES~~~~~ 266 (365)
| +||- +.||.. |..+||-.|- .+|+.-||+|-=.|.+|-
T Consensus 63 r-egfh-iwmns~~~q~gg~P~~YIvqGk~dsqh~LrVRlgGeGWq 106 (150)
T PRK15231 63 R-EGKK-ILISSSLEKIKNTPGAYIIRGQNNSAHKLRIRIGGEDWQ 106 (150)
T ss_pred c-CCeE-EEEecchhhcCCCccEEEEECCCCCcceEEEEecCCCcc
Confidence 7 7998 899988 8899999887 778888999987777763
No 12
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=38.45 E-value=31 Score=23.94 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=11.4
Q ss_pred cCCcceeEEeecCCCcEEEE
Q 017805 240 AFAGHTAVCLKDKEGNLWVG 259 (365)
Q Consensus 240 s~aGHtav~Lrd~dGeL~v~ 259 (365)
++.||+++.+. +++|||.
T Consensus 1 pR~~h~~~~~~--~~~i~v~ 18 (49)
T PF13418_consen 1 PRYGHSAVSIG--DNSIYVF 18 (49)
T ss_dssp --BS-EEEEE---TTEEEEE
T ss_pred CcceEEEEEEe--CCeEEEE
Confidence 47899997763 5889885
No 13
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=32.99 E-value=81 Score=19.46 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=16.9
Q ss_pred CCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEee
Q 017805 212 VHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLK 250 (365)
Q Consensus 212 IhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lr 250 (365)
++.||.+.|. .|.++|+.+..+.
T Consensus 2 ~~~G~~V~I~----------------~G~~~g~~g~i~~ 24 (28)
T smart00739 2 FEVGDTVRVI----------------AGPFKGKVGKVLE 24 (28)
T ss_pred CCCCCEEEEe----------------ECCCCCcEEEEEE
Confidence 5788988888 4777788775553
No 14
>PF12075 KN_motif: KN motif; InterPro: IPR021939 This small motif is found at the N terminus of Kank proteins and has been called the KN (for Kank N-terminal) motif. This protein is found in eukaryotes. Proteins in this family are typically between 413 to 1202 amino acids in length. This protein is found associated with PF00023 from PFAM. This protein has two conserved sequence motifs: TPYG and LDLDF. Kank1 was obtained by positional cloning of a tumor suppressor gene in renal cell carcinoma, while the other members were found by homology search. The family is involved in the regulation of actin polymerisation and cell motility through signaling pathways containing PI3K/Akt and/or unidentified modulators/effectors [].
Probab=32.80 E-value=17 Score=26.81 Aligned_cols=6 Identities=83% Similarity=1.990 Sum_probs=5.2
Q ss_pred Ccceee
Q 017805 321 KPYGYH 326 (365)
Q Consensus 321 ~PYGYh 326 (365)
.|||||
T Consensus 6 tPYGyh 11 (39)
T PF12075_consen 6 TPYGYH 11 (39)
T ss_pred CCccee
Confidence 399999
No 15
>PF07313 DUF1460: Protein of unknown function (DUF1460); InterPro: IPR010846 This family consists of several hypothetical bacterial proteins of around 260 residues in length. The function of this family is unknown.; PDB: 2P1G_B 2IM9_A.
Probab=32.54 E-value=1e+02 Score=29.57 Aligned_cols=58 Identities=17% Similarity=0.401 Sum_probs=39.1
Q ss_pred CCCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeecCCCcEEEEEcCCCCcccccceEecchhHHHH
Q 017805 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWE 282 (365)
Q Consensus 209 ~~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~ 282 (365)
.+.||+||.++|..=. .||| ..|+-++.|..|| |+....-... ++..|.-.|..|+.+
T Consensus 151 ~~~i~~GDiI~i~t~~---~GLD----------vsH~Giav~~~~~-l~l~hASs~~--~~~~vvd~pl~~Yl~ 208 (216)
T PF07313_consen 151 LSQIKNGDIIAIVTNI---KGLD----------VSHVGIAVWKNDG-LHLRHASSLH--KKVVVVDEPLSEYLK 208 (216)
T ss_dssp HTTS-TT-EEEEEEEC---TTEC----------EEEEEEEEEETTE-EEEEEEETTT--TEEEEECCEHHHHHH
T ss_pred HhcCCCCCEEEEEeCC---CCCc----------eeeEEEEEEECCe-EEEEeCCCCC--CCcEEeccCHHHHHh
Confidence 5889999999998532 4555 6799999998555 8887543322 223577788888664
No 16
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.00 E-value=25 Score=36.03 Aligned_cols=109 Identities=21% Similarity=0.380 Sum_probs=73.8
Q ss_pred EeecCChhhHH--HHHhcceEEEEecccc--hhhhhhhhhccccccC-ccch----hhccHHHHHhhcCCceeeccCC--
Q 017805 134 FDSWEEPAELE--YVKQHGVSVFLMPSGM--MGTLLSLIDILPLFSN-SHWG----QNANLAFLEKHMGATFEKRPQP-- 202 (365)
Q Consensus 134 ~k~w~~~~e~e--~ik~~Gv~vFlm~~gm--~gtl~sl~~~~plF~n-t~wg----e~~Nl~FL~~~mG~~fe~R~~~-- 202 (365)
|.+++=++-++ .+++.|+-||.=.+|- .-|+-+.+.- .| +.-| ...=++|+.+|-+--+..|+.-
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~y----RN~~s~gHIiTIEDPIEfih~h~~CIvTQREvGvD 185 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGY----RNKNSTGHIITIEDPIEFIHKHKRCIVTQREVGVD 185 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcc----cccCCCCceEEecChHHHHhcccceeEEeeeeccc
Confidence 34444334333 5678999998755442 3333333321 22 1122 3456899999999999999843
Q ss_pred ---ccccCCCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEee
Q 017805 203 ---WHATINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLK 250 (365)
Q Consensus 203 ---~v~~i~~~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lr 250 (365)
|.+.+.-+-=|+-|.+.|+.+|-| ||++-=.+=|-.||-.||-.
T Consensus 186 Tesw~~AlkNtlRQapDvI~IGEvRsr----etMeyAi~fAeTGHLcmaTL 232 (375)
T COG5008 186 TESWEVALKNTLRQAPDVILIGEVRSR----ETMEYAIQFAETGHLCMATL 232 (375)
T ss_pred hHHHHHHHHHHHhcCCCeEEEeecccH----hHHHHHHHHHhcCceEEEEe
Confidence 333344566789999999999999 99998888899999888765
No 17
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=30.91 E-value=50 Score=22.41 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=20.3
Q ss_pred cCCcceeEEeecCCCcEEEEEcCCCCcccccceE
Q 017805 240 AFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIV 273 (365)
Q Consensus 240 s~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq 273 (365)
++++|+++.+ ++++||+=-.++.....+.+.
T Consensus 1 pR~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~ 31 (47)
T PF01344_consen 1 PRSGHAAVVV---GNKIYVIGGYDGNNQPTNSVE 31 (47)
T ss_dssp -BBSEEEEEE---TTEEEEEEEBESTSSBEEEEE
T ss_pred CCccCEEEEE---CCEEEEEeeecccCceeeeEE
Confidence 3678988666 789999876666444444443
No 18
>PF13964 Kelch_6: Kelch motif
Probab=29.08 E-value=56 Score=22.85 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=15.6
Q ss_pred CCcceeEEeecCCCcEEEEEcCCC
Q 017805 241 FAGHTAVCLKDKEGNLWVGESGHE 264 (365)
Q Consensus 241 ~aGHtav~Lrd~dGeL~v~ES~~~ 264 (365)
+.+|+++++ +|+|||+=-.+.
T Consensus 2 R~~~s~v~~---~~~iyv~GG~~~ 22 (50)
T PF13964_consen 2 RYGHSAVVV---GGKIYVFGGYDN 22 (50)
T ss_pred CccCEEEEE---CCEEEEECCCCC
Confidence 678999665 689999855444
No 19
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=28.83 E-value=50 Score=20.91 Aligned_cols=13 Identities=46% Similarity=1.173 Sum_probs=9.1
Q ss_pred EeecCCCcEEEEE
Q 017805 248 CLKDKEGNLWVGE 260 (365)
Q Consensus 248 ~Lrd~dGeL~v~E 260 (365)
.+.|.+|.|||+=
T Consensus 10 i~~D~~G~lWigT 22 (24)
T PF07494_consen 10 IYEDSDGNLWIGT 22 (24)
T ss_dssp EEE-TTSCEEEEE
T ss_pred EEEcCCcCEEEEe
Confidence 3468889999973
No 20
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=28.22 E-value=1.1e+02 Score=23.82 Aligned_cols=48 Identities=31% Similarity=0.403 Sum_probs=29.5
Q ss_pred cCCCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeecCCCcEEEEEcC
Q 017805 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESG 262 (365)
Q Consensus 206 ~i~~~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~ 262 (365)
.+.++++.+.+.|.|.+ +-..+. .|.......|.|+|++|+.|-++--
T Consensus 4 ~l~~s~~~~~~~l~iP~--------~f~~~~-~~~~~~~~~v~l~~~~g~~W~v~~~ 51 (100)
T PF02362_consen 4 VLKPSDVSSSCRLIIPK--------EFAKKH-GGNKRKSREVTLKDPDGRSWPVKLK 51 (100)
T ss_dssp E--TTCCCCTT-EEE-H--------HHHTTT-S--SS--CEEEEEETTTEEEEEEEE
T ss_pred EEEccCcCCCCEEEeCH--------HHHHHh-CCCcCCCeEEEEEeCCCCEEEEEEE
Confidence 45677888889999995 334444 2223344567899999999999983
No 21
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=28.06 E-value=1.5e+02 Score=26.52 Aligned_cols=86 Identities=19% Similarity=0.272 Sum_probs=53.0
Q ss_pred cCCcceeEEeecCCCcE-----EEEEcC--CCCcc--------cccceEecchhHHHHHHhc-cCCCCcEEEeeCChHHH
Q 017805 240 AFAGHTAVCLKDKEGNL-----WVGESG--HENEK--------GEEIIVVIPWDEWWELALK-DDSNPQIALLPLHPDVR 303 (365)
Q Consensus 240 s~aGHtav~Lrd~dGeL-----~v~ES~--~~~~~--------~~~~Iq~~pweeW~~~~~k-d~a~~~ValLPL~pe~R 303 (365)
|..|||++.+ ..||.. |-++.- +...- =+=.+...|+.+=...+.. .+-+-..=-|.|+||-+
T Consensus 32 s~fGHt~l~f-~~d~~~d~~~ny~~~~~~~~~~~~~~kg~~g~~~~~~~~~~~~~~i~~Y~~~e~R~v~~y~LnLs~ee~ 110 (176)
T PF13387_consen 32 SMFGHTFLRF-FEDGRQDYVYNYGAFDFEGNPFNFYLKGLFGGYEYYFSVAPYRDFIREYSNVEGRDVWEYPLNLSPEEK 110 (176)
T ss_pred hhhceeEEEE-ecCCCceEEEEEEEEecCCcchhhHHHHHhCCCeEEEEecCHHHHHHHHhhhhCCcEEEEEeeCCHHHH
Confidence 5679999886 457765 334444 22111 1224567888887764444 45554455567778777
Q ss_pred hhcchHHHHHHHHhhcCCcceeeee
Q 017805 304 AKFNSTAAWEYARSMSGKPYGYHNM 328 (365)
Q Consensus 304 akFN~TAAwef~~~~eG~PYGYhN~ 328 (365)
++. -...||-.+..+ +||-||-+
T Consensus 111 ~~l-~~~l~e~~~~~~-~~~~Y~f~ 133 (176)
T PF13387_consen 111 QRL-FRHLWENANPEN-RPYRYNFF 133 (176)
T ss_pred HHH-HHHHHHhccccc-cceeehhh
Confidence 654 245677776777 99999843
No 22
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=27.57 E-value=1e+02 Score=24.85 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=27.1
Q ss_pred CCCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeecCCCcEEEEEcC
Q 017805 207 INPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESG 262 (365)
Q Consensus 207 i~~~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~ 262 (365)
...+||..|+...+. +. |-..+.+++.+|++++.+..
T Consensus 5 ~~~~~l~~g~~~~~~-~~------------------~~~~~~~~~~~g~~~A~~n~ 41 (108)
T cd03474 5 CSLDDVWEGEMELVD-VD------------------GEEVLLVAPEGGEFRAFQGI 41 (108)
T ss_pred eehhccCCCceEEEE-EC------------------CeEEEEEEccCCeEEEEcCc
Confidence 346789999988765 32 22567788889999998864
No 23
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=26.18 E-value=89 Score=26.11 Aligned_cols=101 Identities=21% Similarity=0.340 Sum_probs=57.5
Q ss_pred CCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeecCCCcEEEEEcCCC-------CcccccceEecchhHH
Q 017805 208 NPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHE-------NEKGEEIIVVIPWDEW 280 (365)
Q Consensus 208 ~~~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~-------~~~~~~~Iq~~pweeW 280 (365)
..+||..|+...+. + .|...+..|+.||++++++.-=. .-..+...-+=||-.|
T Consensus 7 ~~~dl~~g~~~~~~-~------------------~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~ 67 (115)
T cd03531 7 LARDFRDGKPHGVE-A------------------FGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDW 67 (115)
T ss_pred EHHHCCCCCeEEEE-E------------------CCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCC
Confidence 35678888888776 3 24677788888999999886322 1123333445588887
Q ss_pred HHHHhccCCCCcEEEeeCChHHHhhcchHHHHH-HHHhhcCCcceeeeeeEEEEecCCCCCCCC
Q 017805 281 WELALKDDSNPQIALLPLHPDVRAKFNSTAAWE-YARSMSGKPYGYHNMIFSWIDTMADNYPPP 343 (365)
Q Consensus 281 ~~~~~kd~a~~~ValLPL~pe~RakFN~TAAwe-f~~~~eG~PYGYhN~iFsWIDT~~dNYPpp 343 (365)
. |.+ +- ....+|-.+ +|...++.. |--..+ ..+||-|+| ++.|=|||
T Consensus 68 ~-fd~-~G---~~~~~p~~~----~~p~~~~l~~ypv~~~------~g~v~v~~~-~~~~~p~~ 115 (115)
T cd03531 68 R-WGG-DG---RCKAIPYAR----RVPPLARTRAWPTLER------NGQLFVWHD-PEGNPPPP 115 (115)
T ss_pred E-ECC-CC---CEEECCccc----CCCcccccceEeEEEE------CCEEEEECC-CCCCCCCC
Confidence 6 122 21 244555322 122222221 111111 468999998 78887776
No 24
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=23.86 E-value=47 Score=26.59 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=22.6
Q ss_pred cCCCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEe
Q 017805 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCL 249 (365)
Q Consensus 206 ~i~~~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~L 249 (365)
.++.++.++||+|.... +..+.|.+|.|
T Consensus 46 ~~~~~~~~pGDlif~~~----------------~~~~~Hvgiy~ 73 (105)
T PF00877_consen 46 RVPISELQPGDLIFFKG----------------GGGISHVGIYL 73 (105)
T ss_dssp HEEGGG-TTTEEEEEEG----------------TGGEEEEEEEE
T ss_pred ccchhcCCcccEEEEeC----------------CccCCEeEEEE
Confidence 36788999999998872 67889999998
No 25
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=22.88 E-value=84 Score=27.67 Aligned_cols=44 Identities=30% Similarity=0.373 Sum_probs=32.0
Q ss_pred CchhhHHH--hhcCcCCcceeEEeecCCCcEEEEEcCCC--CcccccceEe
Q 017805 228 GGFETLEK--WVTGAFAGHTAVCLKDKEGNLWVGESGHE--NEKGEEIIVV 274 (365)
Q Consensus 228 dG~d~li~--W~tGs~aGHtav~Lrd~dGeL~v~ES~~~--~~~~~~~Iq~ 274 (365)
+-.+.|.+ -.+|...| |.|.|++|+|-+-|+... |-+|+.+-..
T Consensus 33 ~~p~al~~~~~~~~~itG---m~LiDeEGei~tr~v~~KFvnGkp~~iEa~ 80 (109)
T TIGR03047 33 ENPKALDKFNSDTGEITG---MYLIDEEGEIVTREVKAKFVNGKPKALEAV 80 (109)
T ss_pred CCchhhhhccccccceee---EEEEccCccEEEEecceEEECCCccEEEEE
Confidence 44566666 55688888 999999999999999888 4445544333
No 26
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=22.62 E-value=1.5e+02 Score=24.00 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=26.8
Q ss_pred CCCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeecCCCcEEEEEcCCC
Q 017805 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHE 264 (365)
Q Consensus 209 ~~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~ 264 (365)
.+||.+|+...+. +. |...+..|+.+|++++++..-.
T Consensus 5 ~~dl~~g~~~~~~-~~------------------g~~v~v~r~~~g~~~A~~~~Cp 41 (91)
T cd03477 5 IEDLAPGEGGVVN-IG------------------GKRLAVYRDEDGVLHTVSATCT 41 (91)
T ss_pred hhhcCCCCeEEEE-EC------------------CEEEEEEECCCCCEEEEcCcCC
Confidence 5788999988775 32 3455567877999999887543
No 27
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=21.39 E-value=4.3e+02 Score=22.07 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=48.4
Q ss_pred CCCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeecCCCcEEEEE-cCC----------CCcccccceEecch
Q 017805 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGE-SGH----------ENEKGEEIIVVIPW 277 (365)
Q Consensus 209 ~~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~E-S~~----------~~~~~~~~Iq~~pw 277 (365)
...+++||.|.+.|. ..=|.++-+= ||+..=.- ++. ..-..+..|++.+.
T Consensus 4 ~~~~~~GD~I~~~r~-----------------~y~H~gIYvG--~~~ViH~~~~~~~~~~~~~~~~~~~~~~~~V~~~~l 64 (125)
T PF04970_consen 4 KKRLKPGDHIEVPRG-----------------LYEHWGIYVG--DGEVIHFSGPGEISVSNRSSICGFSKKKAEVKKDSL 64 (125)
T ss_dssp --S--TT-EEEEEET-----------------TEEEEEEEEE--TTEEEEEE-S-SSS-SSSSGGGGT--S-EEEEEEEH
T ss_pred ccCCCCCCEEEEecC-----------------CccEEEEEec--CCeEEEecccccccccccccccceecCCCEEEEEEh
Confidence 456899999999962 4557777764 45433222 111 12235567888888
Q ss_pred hHHHHHHhccCCCCcEEEeeCChHHHhhcchHHHHHHHHhhcCCcceee
Q 017805 278 DEWWELALKDDSNPQIALLPLHPDVRAKFNSTAAWEYARSMSGKPYGYH 326 (365)
Q Consensus 278 eeW~~~~~kd~a~~~ValLPL~pe~RakFN~TAAwef~~~~eG~PYGYh 326 (365)
+++.. +.. +-+....+.....+.-..+.+-|+++-|+...||
T Consensus 65 ~~~~~-----~~~--~~v~~~~~~~~~~~~~~~iv~rA~~~lg~~~~Y~ 106 (125)
T PF04970_consen 65 EEFAQ-----GRK--VRVNNYLDHRYKPFPPEEIVERAESRLGKEFEYN 106 (125)
T ss_dssp HHHHT-----TSE--EEE--GGGGTS--S-HHHHHHHHHHTTT-EESS-
T ss_pred HHhcC-----CCE--EEEEecCCccCCCCCHHHHHHHHHHHHcCCCccC
Confidence 88652 232 4444433345556777788889999999655665
No 28
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=21.19 E-value=73 Score=31.26 Aligned_cols=36 Identities=28% Similarity=0.249 Sum_probs=24.1
Q ss_pred CCcceeEEeecCCCcEEEEEcCCCCcccccceEecchhHHH
Q 017805 241 FAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWW 281 (365)
Q Consensus 241 ~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~ 281 (365)
++||+.|.+.+.|| ++.+|=.. +++--|.+++..+-
T Consensus 185 FvGH~GVLv~~~dg-~LFiEKla----f~ePYQa~kF~~~~ 220 (250)
T PF14133_consen 185 FVGHTGVLVPTKDG-YLFIEKLA----FEEPYQATKFNNKE 220 (250)
T ss_pred EeeeEEEEEEcCCc-EEEEEeeC----CCCCceeEEeCCHH
Confidence 57899999988666 88888543 33445555555544
No 29
>PF08972 DUF1902: Domain of unknown function (DUF1902); InterPro: IPR015066 Members of these prokaryotic proteins adopt a fold consisting of one alpha-helix and four beta-strands. Their function has not, as yet, been elucidated []. ; PDB: 1WV8_A.
Probab=20.61 E-value=94 Score=24.33 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=15.2
Q ss_pred eEEeecCCCcEEEEEcCCC
Q 017805 246 AVCLKDKEGNLWVGESGHE 264 (365)
Q Consensus 246 av~Lrd~dGeL~v~ES~~~ 264 (365)
.-+.||.+-+.||.||.|=
T Consensus 3 I~a~wD~EA~VWvA~s~dv 21 (54)
T PF08972_consen 3 IRAFWDEEAGVWVATSDDV 21 (54)
T ss_dssp EEEEEETTTTEEEEE-SSS
T ss_pred EEEEEcCCCCEEEEecCCC
Confidence 3478999999999999874
No 30
>PF04473 DUF553: Transglutaminase-like domain; InterPro: IPR007562 This entry represents a transglutaminase-like domain found in a family of uncharacterised archaeal proteins that had previously been called DUF553 and UPF0252.
Probab=20.33 E-value=86 Score=28.47 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=24.5
Q ss_pred CcCCcceeEEeecCCCcEEEEEcCCCCcccccceEecchhHHHH
Q 017805 239 GAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWE 282 (365)
Q Consensus 239 Gs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~ 282 (365)
|+- ||.+++++ .+|++||+.-+-. ..+..+|..
T Consensus 106 ~~~-~Haa~aV~-ing~~yvlDq~~p---------~~~l~~y~~ 138 (153)
T PF04473_consen 106 NDP-GHAAVAVK-INGKYYVLDQHLP---------PIDLGDYLK 138 (153)
T ss_pred CCC-CeEEEEEE-ECCEEEEEeCCCC---------CccHHHHHH
Confidence 444 89999997 7999999975543 356677775
No 31
>PF09652 Cas_VVA1548: Putative CRISPR-associated protein (Cas_VVA1548); InterPro: IPR013443 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPR repeats. In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas genes.
Probab=20.25 E-value=65 Score=27.62 Aligned_cols=32 Identities=16% Similarity=0.501 Sum_probs=23.7
Q ss_pred ccHHHHHhhcCCceeeccCCccccCCCCCCCCCCEEE
Q 017805 183 ANLAFLEKHMGATFEKRPQPWHATINPEDVHSGDFLA 219 (365)
Q Consensus 183 ~Nl~FL~~~mG~~fe~R~~~~v~~i~~~dIhsGDfLa 219 (365)
..++++++. |+...++ +.-+|+++|++||.+.
T Consensus 8 GAieW~~~q-g~~iD~~----v~Hld~~~i~~GD~Vi 39 (93)
T PF09652_consen 8 GAIEWAKQQ-GIQIDHF----VDHLDPADIQPGDVVI 39 (93)
T ss_pred cHHHHHHHh-CCCccee----eccCCHHHccCCCEEE
Confidence 457888886 6655443 4578999999999875
No 32
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.02 E-value=1.1e+02 Score=24.06 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=15.2
Q ss_pred cceeEEeecCCCcEEEEEc
Q 017805 243 GHTAVCLKDKEGNLWVGES 261 (365)
Q Consensus 243 GHtav~Lrd~dGeL~v~ES 261 (365)
|...+.++||||.++-+.|
T Consensus 100 g~r~~~~~DPdGn~iei~~ 118 (120)
T cd09011 100 GQRVVRFYDPDKHIIEVGE 118 (120)
T ss_pred ccEEEEEECCCCCEEEEec
Confidence 4457799999999997765
Done!