Query 017805
Match_columns 365
No_of_seqs 49 out of 51
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 05:14:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017805.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017805hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kw0_A Cysteine peptidase; str 98.7 1.1E-07 3.9E-12 85.9 10.6 103 209-327 37-150 (214)
2 2if6_A Hypothetical protein YI 98.5 3.2E-07 1.1E-11 79.9 8.1 102 208-326 1-102 (186)
3 4h4j_A Hypothetical protein; P 50.7 27 0.00092 32.4 6.1 72 209-299 168-239 (240)
4 2jyx_A Lipoprotein SPR; soluti 39.3 40 0.0014 27.8 4.9 49 206-279 62-110 (136)
5 2p1g_A Putative xylanase; stru 30.3 1E+02 0.0034 29.0 6.5 55 210-281 170-225 (249)
6 2im9_A Hypothetical protein; s 25.3 1.5E+02 0.005 29.1 6.9 62 210-282 239-301 (333)
7 3jxo_A TRKA-N domain protein; 23.6 71 0.0024 23.3 3.5 29 208-239 57-85 (86)
8 3j21_U 50S ribosomal protein L 21.1 31 0.0011 29.2 1.2 16 293-308 26-41 (121)
9 1rwi_B Serine/threonine-protei 18.8 74 0.0025 26.0 2.9 28 244-278 236-263 (270)
10 3c0d_A Putative nitrite reduct 14.9 1.5E+02 0.0053 23.3 3.8 41 203-262 6-46 (119)
No 1
>3kw0_A Cysteine peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: LYS; 2.50A {Bacillus cereus}
Probab=98.66 E-value=1.1e-07 Score=85.90 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=81.7
Q ss_pred CCCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeecCCCcEEEEEcCCCCcccccceEecchhHHHHHHhcc-
Q 017805 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKD- 287 (365)
Q Consensus 209 ~~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~~kd- 287 (365)
.+++++||.|.++ |+ +.++.+|+++|+|..+|.+|.+.+ +++++|+|+.. ..+|+..|+++|.+ .++.
T Consensus 37 ~~~l~~GDlif~~---~~-~~~s~~I~~~T~s~~sHvgI~~~~-~~~~~vieA~~-----~~GV~~~~L~~fl~-~~~~~ 105 (214)
T 3kw0_A 37 INVLKTGDIFLCS---GN-YLVSKLIKKVSESMFSHTGIIVKW-GEHTLIMESVE-----DDGVRIVPLEHYIK-NYENS 105 (214)
T ss_dssp TTTCCTTCEEEEE---EC-SHHHHHHHHHTTSSCCEEEEEEEE-TTEEEEEEEET-----TTEEEEEETHHHHH-CGGGS
T ss_pred HhhCCCCCEEEEe---CC-CcHHHHHHHhcCCCCcEEEEEEec-CCceEEEEecC-----CCCEEEecHHHHHH-Hhhcc
Confidence 6799999999996 34 778999999999999999999987 78999999953 35699999999986 2221
Q ss_pred --CCCCcEEEee--------CChHHHhhcchHHHHHHHHhhcCCcceeee
Q 017805 288 --DSNPQIALLP--------LHPDVRAKFNSTAAWEYARSMSGKPYGYHN 327 (365)
Q Consensus 288 --~a~~~ValLP--------L~pe~RakFN~TAAwef~~~~eG~PYGYhN 327 (365)
..+-.+++.. |.+|.++ ++.+|+++..|+||.+.+
T Consensus 106 ~~~y~~~i~V~Rl~~~~~v~lt~~~~~-----~l~~~a~~~lGkpYd~~~ 150 (214)
T 3kw0_A 106 NNRYNGSLFIARHELLQNVNDDSEMIR-----NLIKVGFSLLNSGYDKNE 150 (214)
T ss_dssp SSCCSEEEEEEEEGGGTTSCTTSHHHH-----HHHHHHHHHCCSCCCHHH
T ss_pred cccccCceEEEEeccccccCCCHHHHH-----HHHHHHHHhcCCCCCcHH
Confidence 2223577754 5555554 588999999999999854
No 2
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=98.48 E-value=3.2e-07 Score=79.93 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=77.6
Q ss_pred CCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeecCCCcEEEEEcCCCCcccccceEecchhHHHHHHhcc
Q 017805 208 NPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKD 287 (365)
Q Consensus 208 ~~~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~~kd 287 (365)
+++++++||.|... |+ +.+..+|+.+|++..+|.+|.+.+ +|+.+|+|+.. +++..+.++|.+. .
T Consensus 1 ~~~~l~~GDlvf~~---~~-~~~s~~I~~~t~~~~sHvgI~~~~-~~~~~viea~~-------gV~~~~l~~f~~~--~- 65 (186)
T 2if6_A 1 SLWQPQTGDIIFQI---SR-SSQSKAIQLATHSDYSHTGMLVMR-NKKPYVFEAVG-------PVKYTPLKQWIAH--G- 65 (186)
T ss_dssp --CCCCTTCEEEEC---CC-STTHHHHHHHHTSSCCEEEEEEEE-TTEEEEEEESS-------SEEEEEHHHHHHT--S-
T ss_pred CcccCCCCCEEEEE---cC-CchHHHHHHHcCCCCceEEEEEEe-CCcEEEEEeCC-------CeEEEEHHHHHhh--c-
Confidence 46789999998764 33 568899999999999999999975 78899999972 4999999998752 1
Q ss_pred CCCCcEEEeeCChHHHhhcchHHHHHHHHhhcCCcceee
Q 017805 288 DSNPQIALLPLHPDVRAKFNSTAAWEYARSMSGKPYGYH 326 (365)
Q Consensus 288 ~a~~~ValLPL~pe~RakFN~TAAwef~~~~eG~PYGYh 326 (365)
.+-++++.+|+.++.. -...+|.+++.+..|+||.|.
T Consensus 66 -~~~~~~v~Rl~~~ls~-~~~~~~~~~a~~~~G~pY~~~ 102 (186)
T 2if6_A 66 -EKGKYVVRRVEGGLSV-EQQQKLAQTAKRYLGKPYDFS 102 (186)
T ss_dssp -GGGCEEEEEETTCCCH-HHHHHHHHHHGGGTTCCBCTT
T ss_pred -cCCcEEEEEeCCCCCH-HHHHHHHHHHHHHcCCcCCcc
Confidence 1226888888753211 113467889999999999994
No 3
>4h4j_A Hypothetical protein; PF07313 family protein, DUF 1460, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.15A {Bacteroides uniformis}
Probab=50.67 E-value=27 Score=32.39 Aligned_cols=72 Identities=13% Similarity=0.262 Sum_probs=48.4
Q ss_pred CCCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeecCCCcEEEEEcCCCCcccccceEecchhHHHHHHhccC
Q 017805 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKDD 288 (365)
Q Consensus 209 ~~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~~kd~ 288 (365)
.+.|++||.++|.+= - .|--..|.-++.|. +|+|+...--.. .++-+|...|..|..+ ++.
T Consensus 168 ~~~l~~GDiIai~t~---~----------~GLDvsH~Giai~~-~~~l~l~hASS~--~~~vvv~d~pl~~Yl~---~~~ 228 (240)
T 4h4j_A 168 LPWIKDGDIIAITTN---T----------PGLDVAHMGIAFYA-DNKLLLVHASST--DKKVVVSKVPLSQMLK---DNN 228 (240)
T ss_dssp CTTSCTTCEEEEEEC---S----------TTCSEEEEEEEEEE-TTEEEEEEEETT--TTEEEECSSCHHHHHH---HCT
T ss_pred HhhCCCCcEEEEEec---C----------CCceEEEEEEEEEE-CCeEEEEEcCCC--CCceEEcCccHHHHHh---hCC
Confidence 467999999999863 2 35556899999996 888999873222 2334555778999653 333
Q ss_pred CCCcEEEeeCC
Q 017805 289 SNPQIALLPLH 299 (365)
Q Consensus 289 a~~~ValLPL~ 299 (365)
+.+=|.++.++
T Consensus 229 ~~~GI~V~R~k 239 (240)
T 4h4j_A 229 KWTGIRVLRMK 239 (240)
T ss_dssp TEEEEEEEEEC
T ss_pred CCCCeEEEEeC
Confidence 44446666543
No 4
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=39.27 E-value=40 Score=27.84 Aligned_cols=49 Identities=10% Similarity=0.342 Sum_probs=31.1
Q ss_pred cCCCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeecCCCcEEEEEcCCCCcccccceEecchhH
Q 017805 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDE 279 (365)
Q Consensus 206 ~i~~~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pwee 279 (365)
.++.+++++||+|... +|+..+|..|.+= +|+ ++++... ..++..+.++
T Consensus 62 ~v~~~~l~pGDLvff~----------------~~~~~~HVgIy~G--~g~--~IHa~~~-----~gV~i~~l~~ 110 (136)
T 2jyx_A 62 SVSRSNLRTGDLVLFR----------------AGSTGRHVGIYIG--NNQ--FVHASTS-----SGVIISSMNE 110 (136)
T ss_dssp ECCTTTCCTTEEEEEE----------------CSSSSEEEEEEEE--TTE--EEEEETT-----TEEEEEETTS
T ss_pred EcchHhCCCCCEEEEC----------------CCCCCCEEEEEEc--CCE--EEEECCC-----CCEEEEECCc
Confidence 5677899999998765 2334789998883 564 4444332 2355555554
No 5
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Bacteroides fragilis}
Probab=30.29 E-value=1e+02 Score=28.98 Aligned_cols=55 Identities=15% Similarity=0.278 Sum_probs=38.7
Q ss_pred CCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeecCCCcEEEEEcCCCCcccccceE-ecchhHHH
Q 017805 210 EDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIV-VIPWDEWW 281 (365)
Q Consensus 210 ~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq-~~pweeW~ 281 (365)
+.|++||.|+|..= ..|--..|+-++.|. +|+|+..-.-..-. ++|- ..|..|-+
T Consensus 170 ~~l~~GDiI~i~t~-------------~~GLDVsHvGi~i~~-~~~l~f~hASs~~~---kVv~s~~~l~~Y~ 225 (249)
T 2p1g_A 170 PWIKNGDIIALTTN-------------TPGLDVSHMGIAIYI-KGQLHLLHASSKEG---KVVVGKTALSQML 225 (249)
T ss_dssp TTSCTTCEEEEEEC-------------STTCSEEEEEEEEEE-TTEEEEEEEETTTT---EEEECSSCHHHHH
T ss_pred hcCCCCCEEEEEeC-------------CCCCceeEEEEEEEE-CCeEEEEEcCCCCC---eEEECCcCHHHHH
Confidence 77999999999852 145567899999997 89999885433321 3333 34888844
No 6
>2im9_A Hypothetical protein; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.67A {Legionella pneumophila subsp} SCOP: d.3.1.13
Probab=25.30 E-value=1.5e+02 Score=29.10 Aligned_cols=62 Identities=11% Similarity=0.238 Sum_probs=41.9
Q ss_pred CCCCCCCEEEEEeecccCCchhhHHHh-hcCcCCcceeEEeecCCCcEEEEEcCCCCcccccceEecchhHHHH
Q 017805 210 EDVHSGDFLAVSKIRGRWGGFETLEKW-VTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWE 282 (365)
Q Consensus 210 ~dIhsGDfLaiskirgr~dG~d~li~W-~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~ 282 (365)
+.|++||.|+|.+= .| .|.++ ++|--..|+-++.|. +|+|+..---.. .+ .|..-|..|-..
T Consensus 239 ~~I~~GDII~I~t~--~~----~l~~~ig~GLDVsHvGiai~~-~g~l~lrhASS~---~~-kVVd~pL~~Yl~ 301 (333)
T 2im9_A 239 SQIPNGAVIEIIRP--NW----DLRQQIGTELDISHLGFAIWI-NNELFFRQASSQ---YG-KVVDVSLIDYLD 301 (333)
T ss_dssp TTSCTTCEEEEEEE--EE----CCHHHHSSCEEEEEEEEEEEE-TTEEEEEEEETT---TT-EEEEEEHHHHHH
T ss_pred hhCCCCCEEEEEec--Cc----cccccccCCCcceEEEEEEEE-CCeEEEEecCCC---CC-eEEeccHHHHHh
Confidence 78999999999952 11 11122 246667899999997 788998754333 22 355778888554
No 7
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=23.56 E-value=71 Score=23.29 Aligned_cols=29 Identities=31% Similarity=0.263 Sum_probs=21.4
Q ss_pred CCCCCCCCCEEEEEeecccCCchhhHHHhhcC
Q 017805 208 NPEDVHSGDFLAVSKIRGRWGGFETLEKWVTG 239 (365)
Q Consensus 208 ~~~dIhsGDfLaiskirgr~dG~d~li~W~tG 239 (365)
...-|++||.|.|. |+-+.++.+.+..+|
T Consensus 57 ~~~~l~~GD~l~v~---g~~~~~~~~~~~~~~ 85 (86)
T 3jxo_A 57 GDTEILSGDKLYVI---VSAEAKETVEETLLG 85 (86)
T ss_dssp TTCBCCTTCEEEEE---EETTTHHHHHHHHC-
T ss_pred CCCEECCCCEEEEE---ECHHHHHHHHHHHcC
Confidence 35679999999987 455777887776654
No 8
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.06 E-value=31 Score=29.19 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=13.0
Q ss_pred EEEeeCChHHHhhcch
Q 017805 293 IALLPLHPDVRAKFNS 308 (365)
Q Consensus 293 ValLPL~pe~RakFN~ 308 (365)
+---||++|+|+|||-
T Consensus 26 ~msa~LSkeLR~ky~~ 41 (121)
T 3j21_U 26 LMSAPLSRELREKYKV 41 (121)
T ss_dssp GSEEEBCHHHHHHTCC
T ss_pred hhcCcCCHHHHHHhCC
Confidence 3456999999999974
No 9
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=18.79 E-value=74 Score=26.02 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=19.6
Q ss_pred ceeEEeecCCCcEEEEEcCCCCcccccceEecchh
Q 017805 244 HTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWD 278 (365)
Q Consensus 244 Htav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pwe 278 (365)
-+.+++ ++||+|||.++++.. |++...+
T Consensus 236 p~~i~~-~~~g~l~v~~~~~~~------v~~~~~~ 263 (270)
T 1rwi_B 236 PLAVAV-DSDRTVYVADRGNDR------VVKLTSL 263 (270)
T ss_dssp EEEEEE-CTTCCEEEEEGGGTE------EEEECCC
T ss_pred ceeEEE-CCCCCEEEEECCCCE------EEEEcCC
Confidence 345555 689999999988765 6655544
No 10
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=14.85 E-value=1.5e+02 Score=23.32 Aligned_cols=41 Identities=10% Similarity=-0.044 Sum_probs=27.8
Q ss_pred ccccCCCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCCcceeEEeecCCCcEEEEEcC
Q 017805 203 WHATINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESG 262 (365)
Q Consensus 203 ~v~~i~~~dIhsGDfLaiskirgr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~ 262 (365)
|+.--..+||.+|+.+.+. + .|...+..|+.||++++.+..
T Consensus 6 w~~v~~~~el~~g~~~~~~-~------------------~g~~v~v~r~~~G~~~A~~n~ 46 (119)
T 3c0d_A 6 KVKLCQLDDLMPFIGATVL-I------------------EGERVALFYIPDSGVYAVQDW 46 (119)
T ss_dssp EEEEEEGGGSCBTCCEEEE-E------------------TTEEEEEEEETTTEEEEEESE
T ss_pred cEEEEEHHHCCCCCeEEEE-E------------------CCeEEEEEEecCCeEEEEeCC
Confidence 4323346788889887765 3 234566678779999999854
Done!