BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017806
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 35/163 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + Y A+E PE A N A VLQ+ L+EA Y EA R+
Sbjct: 28 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 73
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
PT DA+ N M KE +++ + A + Y +A+Q+N A +N ++
Sbjct: 74 PTFADAYSN----------MGNTLKEMQDV-QGALQCYTRAIQINPAFADAHSNLA-SIH 121
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
+ S +P AI+ +R A++L+ DF A NL L
Sbjct: 122 KDSGNIP---------EAIASYRTALKLKPDFPDAYCNLAHCL 155
>pdb|1ZU2|A Chain A, Solution Nmr Structure Of The Plant Tom20 Mitochondrial
Import Receptor From Arabidopsis Thaliana
Length = 158
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 138 RILTFAAKRY--ANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKY 195
RIL F R N + NP D D L W VL E + S S +K +++EA K+
Sbjct: 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELS---QFHSISDAKQ-MIQEAITKF 69
Query: 196 DEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV 244
+EA + P +A + A + A + EA+ + AT+ +++AV
Sbjct: 70 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV 118
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291
L++Q ++ E + N L WG L ELS + + +++ AI+KF A+ +
Sbjct: 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID 76
Query: 292 FDFHRAIYNLGTVLYGLA 309
A++ +G A
Sbjct: 77 PKKDEAVWCIGNAYTSFA 94
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 50/141 (35%), Gaps = 33/141 (23%)
Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK-------------------- 227
L+EA + Y A RL P D + N A A+ M G +
Sbjct: 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142
Query: 228 ---EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF 284
+A ++A Y KA++ N A +N G Q + AI F
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN----------AQGEIWLAIHHF 192
Query: 285 RAAIQLQFDFHRAIYNLGTVL 305
A+ L +F A NLG VL
Sbjct: 193 EKAVTLDPNFLDAYINLGNVL 213
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + Y A+E PE A N A VLQ+ L+EA Y EA R+
Sbjct: 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 369
Query: 203 PTLHDAFYN 211
PT DA+ N
Sbjct: 370 PTFADAYSN 378
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 31/148 (20%)
Query: 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD--------NVSLDSTSPSKDAL- 187
Q ++ A Y AIE P DA N A L+E N +L D+L
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309
Query: 188 -----------LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236
+EEA + Y +A + P A N A + + K+ ++A
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL-----------QEA 358
Query: 237 TKNYEKAVQLNWNSPQALNNWGLALQEL 264
+Y++A++++ A +N G L+E+
Sbjct: 359 LMHYKEAIRISPTFADAYSNMGNTLKEM 386
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 313
W L+EL A +E + R AIS +AA +L+ D A Y + T+ Y L + L
Sbjct: 152 WDAELRELRAECFIKEGEP--RKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 313
W L+EL A +E + R AIS +AA +L+ D A Y + T+ Y L + L
Sbjct: 175 WDAELRELRAECFIKEGEP--RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 21/123 (17%)
Query: 184 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243
K +EA + Y +A L P +A+YN + + +G EA E Y+KA
Sbjct: 13 KQGDYDEAIEYYQKALELDPRSAEAWYN----LGNAYYKQGDYDEAIEY-------YQKA 61
Query: 244 VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303
++L+ S +A N G A KQ AI ++ A++L A YNLG
Sbjct: 62 LELDPRSAEAWYNLG----------NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 111
Query: 304 VLY 306
Y
Sbjct: 112 AYY 114
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 313
W L+EL A +E + R AIS +AA +L+ D A Y + T+ Y L + L
Sbjct: 175 WDAELRELRAECFIKEGEP--RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
Length = 489
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 77 GNRTFTMRELLTELKSEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSR 136
GN+ F LL + ED V + G T + L + N + L ++ R R
Sbjct: 304 GNKLFNRGGLLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMS-----NRGR 358
Query: 137 QRILTFAAKRY-------ANAIERNPEDYDALYNWA 165
Q + +F K A E DYD NW
Sbjct: 359 QNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWG 394
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 34/145 (23%)
Query: 125 SVTGVDEEGRSRQRILTF-----AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS 179
S+TG + GR + F AA+ + AIE N ED N+A +L +
Sbjct: 23 SMTGGQQMGRGSE----FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNE------ 72
Query: 180 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239
LE A YD+A L + A+Y G +E++K+A
Sbjct: 73 --------LERALAFYDKALELDSSAATAYYG-----------AGNVYVVKEMYKEAKDM 113
Query: 240 YEKAVQLNWNSPQALNNWGLALQEL 264
+EKA++ + G L +L
Sbjct: 114 FEKALRAGMENGDLFYMLGTVLVKL 138
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKM 222
W L + N S + P D L E +DE T+ D I +DR KM
Sbjct: 127 GWELAYGKEG-NFSFPNVPPMADLLYEVEVIGFDE-TKEGKARSDMTVEERIGAADRRKM 184
Query: 223 RGRTKEAEELWKQATKNYEKAV 244
G + EE ++A + YE A+
Sbjct: 185 DGNSLFKEEKLEEAMQQYEMAI 206
>pdb|3CNF|A Chain A, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
pdb|3CNF|B Chain B, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
pdb|3IZX|B Chain B, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
pdb|3IZX|C Chain C, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
Length = 1333
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 20/137 (14%)
Query: 113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDAL------YNWAL 166
A +N + N+ +G + Q ++T Y IER E D L W +
Sbjct: 707 ATMSNFMLNFTNNFSGNHATFKPDQYVITSPEGSYKPIIERQGETVDGLTIIDTSIVWPI 766
Query: 167 VLQ----------ESADNVSL--DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214
+ Q + D VS+ + P L ++ ++L TL DAF N +
Sbjct: 767 LCQCTYPLVRQSGKGVDAVSIMEEIVYPDPSTTLSQSLSVAQVLSKL--TLPDAFINMIL 824
Query: 215 AISDRAKMRGRTKEAEE 231
+ D MR EA++
Sbjct: 825 SGGDSVVMRTYQTEADD 841
>pdb|3HAH|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2
Lattice)
pdb|3HAH|B Chain B, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2
Lattice)
Length = 325
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 23/156 (14%)
Query: 96 DSVTDASFSQGN---TPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIE 152
+ TD+ + GN T ++ + + +L+N V + ++ + LT AKR+ IE
Sbjct: 13 EETTDSFWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIE 72
Query: 153 RNPEDYDALYN-WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 211
+ P+ Y +L W ++ E AD VS + K+ LL E +K N
Sbjct: 73 KGPQ-YGSLERAWGAIMTE-ADKVS-ELHQEVKNNLLNEDLEK--------------VKN 115
Query: 212 WAIAISDRAKMRG--RTKEAEELWKQATKNYEKAVQ 245
W + M G TKEAE+ +++A K + K ++
Sbjct: 116 WQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMK 151
>pdb|3IZ3|B Chain B, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3IZ3|C Chain C, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3J17|B Chain B, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
pdb|3J17|C Chain C, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
Length = 1333
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 20/137 (14%)
Query: 113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDAL------YNWAL 166
A +N + N+ +G + Q ++T Y IER E D L W +
Sbjct: 707 ATMSNFMLNFTNNFSGNHATFKPDQYVITSPEGSYKPIIERQGETVDGLTIIDTSIVWPI 766
Query: 167 VLQ----------ESADNVSL--DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214
+ Q + D VS+ + P L ++ ++L TL DAF N +
Sbjct: 767 LCQCTYPLVRQSGKGVDAVSIMEEIVYPDPSTTLSQSLSVAQVLSKL--TLPDAFINMIL 824
Query: 215 AISDRAKMRGRTKEAEE 231
+ D MR EA++
Sbjct: 825 SGGDSVVMRTYQTEADD 841
>pdb|3QNI|A Chain A, Crystal Structure Of Human Pacsin 1 F-Bar Domain
pdb|3QNI|B Chain B, Crystal Structure Of Human Pacsin 1 F-Bar Domain
Length = 307
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 23/156 (14%)
Query: 96 DSVTDASFSQGN---TPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIE 152
+ TD+ + GN T ++ + + +L+N V + ++ + LT AKR+ IE
Sbjct: 13 EETTDSFWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIE 72
Query: 153 RNPEDYDALYN-WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 211
+ P+ Y +L W ++ E AD VS + K+ LL E +K N
Sbjct: 73 KGPQ-YGSLERAWGAIMTE-ADKVS-ELHQEVKNNLLNEDLEKVK--------------N 115
Query: 212 WAIAISDRAKMRG--RTKEAEELWKQATKNYEKAVQ 245
W + M G TKEAE+ +++A K + K ++
Sbjct: 116 WQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMK 151
>pdb|3HAI|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|B Chain B, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|C Chain C, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|D Chain D, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
Length = 308
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 23/156 (14%)
Query: 96 DSVTDASFSQGN---TPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIE 152
+ TD+ + GN T ++ + + +L+N V + ++ + LT AKR+ IE
Sbjct: 13 EETTDSFWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIE 72
Query: 153 RNPEDYDALYN-WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 211
+ P+ Y +L W ++ E AD VS + K+ LL E +K N
Sbjct: 73 KGPQ-YGSLERAWGAIMTE-ADKVS-ELHQEVKNNLLNEDLEK--------------VKN 115
Query: 212 WAIAISDRAKMRG--RTKEAEELWKQATKNYEKAVQ 245
W + M G TKEAE+ +++A K + K ++
Sbjct: 116 WQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMK 151
>pdb|2JAS|A Chain A, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|B Chain B, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|C Chain C, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|D Chain D, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|E Chain E, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|F Chain F, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
Length = 206
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 215 AISDRAKMRGRTKE---AEELWKQATKNYEKAVQLN 247
AIS R K RGR++E EE W+ KNYE+ + N
Sbjct: 139 AIS-RIKKRGRSEELLIGEEYWETLNKNYEEFYKQN 173
>pdb|2JAQ|A Chain A, Structure Of Deoxyadenosine Kinase From M. Mycoides With
Bound Dctp
pdb|2JAQ|B Chain B, Structure Of Deoxyadenosine Kinase From M. Mycoides With
Bound Dctp
pdb|2JAT|A Chain A, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Products Dcmp And A Flexible Dcdp Bound
pdb|2JAT|B Chain B, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Products Dcmp And A Flexible Dcdp Bound
Length = 205
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 215 AISDRAKMRGRTKE---AEELWKQATKNYEKAVQLN 247
AIS R K RGR++E EE W+ KNYE+ + N
Sbjct: 138 AIS-RIKKRGRSEELLIGEEYWETLNKNYEEFYKQN 172
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 21/121 (17%)
Query: 184 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243
K +EA + Y +A L P +A+YN + + +G EA E Y+KA
Sbjct: 21 KQGDYDEAIEYYQKALELDPNNAEAWYN----LGNAYYKQGDYDEAIEY-------YQKA 69
Query: 244 VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303
++L+ N+ +A N G A KQ AI ++ A++L + A NLG
Sbjct: 70 LELDPNNAEAWYNLG----------NAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119
Query: 304 V 304
Sbjct: 120 A 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.125 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,479,401
Number of Sequences: 62578
Number of extensions: 415056
Number of successful extensions: 954
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 938
Number of HSP's gapped (non-prelim): 34
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)